Citrus Sinensis ID: 036510

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEEEcccccEEEEEEEccccccEEEEccccccEEEEEcccccEEEEEEEcccccccEEEEEEcccccccEEEEEEccccEEEEEccccccEEEEcccccccccEEEEEEcccccccccccccccccccEEEEEEccccEEEEEcccccEEEEEccccccccccEEEEEEcccccccccEEEEEEccccEEEEEccccccEEcccccccccccEEEEEEcccccEEEEEEccccEEEEEcc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccccEEEEEccccccEEEEEEcccccccEEEEEccccEEEEEEccccccccEEEEEccccccEEEEEEcccccccEEEEEccccEEEEEEcccccccEEEEEEccccccEEEEEEccccccccEEEEEEcccccEEEEEccccEEEEEEcccccccccEEEEcccccccEEEEEEcccccccccEEEEEccccEEEEEEccccccEEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEccc
Coil and Loop (DISEMBL)
mppqkietghedtvhDVAMDYYGKRlatassdysikiigvgnntSQHLAKLSGHKGAVWEVAwahpkfgsilasCSFDGTVIIWkegnsnewikdhvfedhkssvnsidwaphELGLCLacgssdgnisvftaradggwdtsridqahpvgvtsvswapstapgalvgsgfldpvqklcsggcdntVKVWKLYNgiwkmdcfpalqmhtdwvrdvawapnlglpkstiasaseDGKVIIWTVAregdqwegkvlhdfktpvyrvSWSLTGNILAvadgnnnvtlweea
Flexible Loop (DISEMBL)
mppqkietghedtvhDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPkstiasasedgKVIIWTVAregdqwegkVLHDFKTPVYRVSWSLTGNilavadgnnNVTLWEEA
Low Complexity Region (SEG)
MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA
Disordered region (IsUnstruct)
*************VHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLW***
Disordered Region (DISOPRED)
*PPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA
Disordered Region (DISEMBL)
*********HEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA
Disordered Region (DISPRO)
*PPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	288	2.2.26 [Sep-21-2011]
Q9D1M0	322	Protein SEC13 homolog OS=	yes	no	0.972	0.869	0.534	4e-81
Q5XFW8	322	Protein SEC13 homolog OS=	yes	no	0.972	0.869	0.534	5e-81
Q3ZCC9	322	Protein SEC13 homolog OS=	yes	no	0.972	0.869	0.534	3e-80
P55735	322	Protein SEC13 homolog OS=	yes	no	0.972	0.869	0.527	4e-80
Q54DS8	301	Protein transport protein	yes	no	0.982	0.940	0.517	3e-77
Q4PCB8	364	Protein transport protein	N/A	no	0.979	0.774	0.449	6e-72
O94319	297	Protein transport protein	yes	no	0.965	0.936	0.487	7e-68
A2QHM1	308	Protein transport protein	yes	no	0.982	0.918	0.486	7e-67
Q5B563	309	Protein transport protein	yes	no	0.958	0.893	0.482	1e-66
Q1DZQ0	304	Protein transport protein	N/A	no	0.958	0.907	0.484	2e-66

>sp|Q9D1M0|SEC13_MOUSE Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=2 SV=3

 Score =  301 bits (770), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 154/288 (53%), Positives = 198/288 (68%), Gaps = 8/288 (2%)

Query: 6   IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH 65
           ++T HED +HD  MDYYG RLAT SSD S+KI  V N     +A L GH+G VW+VAWAH
Sbjct: 8   VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAH 67

Query: 66  PKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125
           P +G+ILASCS+D  VIIWKE N   W K H    H SSVNS+ WAPH+ GL LACGSSD
Sbjct: 68  PMYGNILASCSYDRKVIIWKEENGT-WEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSD 126

Query: 126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV---GSGFLDPVQKLCSGG 182
           G IS+ T   +G W+  +I+ AH +G  +VSWAP+  PG+L+        + ++K  SGG
Sbjct: 127 GAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGG 186

Query: 183 CDNTVKVWK-LYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT 241
           CDN +K+W+   +G WK +    L+ H+DWVRDVAWAP++GLP STIAS S+DG+V IWT
Sbjct: 187 CDNLIKLWREEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244

Query: 242 V-AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288
                G+ W  K+LH F   V+ VSWS+T NILAV+ G+N VTLW+E+
Sbjct: 245 CDDASGNMWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292

Functions as a component of the nuclear pore complex (NPC) and the COPII coat. At the endoplasmic reticulum, SEC13 is involved in the biogenesis of COPII-coated vesicles.
Mus musculus (taxid: 10090)

>sp|Q5XFW8|SEC13_RAT Protein SEC13 homolog OS=Rattus norvegicus GN=Sec13 PE=1 SV=1

 Score =  301 bits (770), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 154/288 (53%), Positives = 198/288 (68%), Gaps = 8/288 (2%)

Query: 6   IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH 65
           ++T HED +HD  MDYYG RLAT SSD S+KI  V N     +A L GH+G VW+VAWAH
Sbjct: 8   VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAH 67

Query: 66  PKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125
           P +G+ILASCS+D  VIIWKE N   W K H    H SSVNS+ WAPH+ GL LACGSSD
Sbjct: 68  PMYGNILASCSYDRKVIIWKEENGT-WEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSD 126

Query: 126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV---GSGFLDPVQKLCSGG 182
           G IS+ T   +G W+  +I+ AH +G  +VSWAP+  PG+L+        + ++K  SGG
Sbjct: 127 GAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGG 186

Query: 183 CDNTVKVWK-LYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT 241
           CDN +K+W+   +G WK +    L+ H+DWVRDVAWAP++GLP STIAS S+DG+V IWT
Sbjct: 187 CDNLIKLWREEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244

Query: 242 V-AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288
                G+ W  K+LH F   V+ VSWS+T NILAV+ G+N VTLW+E+
Sbjct: 245 CDDASGNMWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292

Functions as a component of the nuclear pore complex (NPC) and the COPII coat. At the endoplasmic reticulum, SEC13 is involved in the biogenesis of COPII-coated vesicles.

Rattus norvegicus (taxid: 10116)

>sp|Q3ZCC9|SEC13_BOVIN Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 SV=1

 Score =  298 bits (763), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 154/288 (53%), Positives = 197/288 (68%), Gaps = 8/288 (2%)

Query: 6   IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH 65
           ++T HED +HD  MDYYG RLAT SSD S+KI  V N     +A L GH+G VW+VAWAH
Sbjct: 8   VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILVADLRGHEGPVWQVAWAH 67

Query: 66  PKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125
           P +G+ILASCS+D  VIIWKE N   W K H    H SSVNS+ WAPH+ GL LACGSSD
Sbjct: 68  PMYGNILASCSYDRKVIIWKEENGT-WEKTHEHTGHDSSVNSVCWAPHDYGLILACGSSD 126

Query: 126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV---GSGFLDPVQKLCSGG 182
           G IS+ T    G W+  +I+ AH +G  +VSWAP+  PG+L+        + ++K  SGG
Sbjct: 127 GAISLLTYTGLGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGG 186

Query: 183 CDNTVKVWK-LYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT 241
           CDN +K+WK   +G WK +    L+ H+DWVRDVAWAP++GLP STIAS S+DG+V +WT
Sbjct: 187 CDNLIKLWKEEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFVWT 244

Query: 242 V-AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288
                G+ W  K+LH F   V+ VSWS+T NILAV+ G+N VTLW+E+
Sbjct: 245 CDDASGNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292

Functions as a component of the nuclear pore complex (NPC) and the COPII coat. At the endoplasmic reticulum, SEC13 is involved in the biogenesis of COPII-coated vesicles.

Bos taurus (taxid: 9913)

>sp|P55735|SEC13_HUMAN Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=1 SV=3

 Score =  298 bits (762), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 152/288 (52%), Positives = 197/288 (68%), Gaps = 8/288 (2%)

Query: 6   IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH 65
           ++T HED +HD  MDYYG RLAT SSD S+KI  V N     +A L GH+G VW+VAWAH
Sbjct: 8   VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAH 67

Query: 66  PKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125
           P +G+ILASCS+D  VIIW+E N   W K H    H SSVNS+ WAPH+ GL LACGSSD
Sbjct: 68  PMYGNILASCSYDRKVIIWREENGT-WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD 126

Query: 126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV---GSGFLDPVQKLCSGG 182
           G IS+ T   +G W+  +I+ AH +G  +VSWAP+  PG+L+        + +++  SGG
Sbjct: 127 GAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG 186

Query: 183 CDNTVKVWK-LYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT 241
           CDN +K+WK   +G WK +    L+ H+DWVRDVAWAP++GLP STIAS S+DG+V IWT
Sbjct: 187 CDNLIKLWKEEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244

Query: 242 V-AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288
                 + W  K+LH F   V+ VSWS+T NILAV+ G+N VTLW+E+
Sbjct: 245 CDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292

Functions as a component of the nuclear pore complex (NPC) and the COPII coat. At the endoplasmic reticulum, SEC13 is involved in the biogenesis of COPII-coated vesicles.

Homo sapiens (taxid: 9606)

>sp|Q54DS8|SEC13_DICDI Protein transport protein SEC13 OS=Dictyostelium discoideum GN=sec13 PE=3 SV=1

 Score =  288 bits (737), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 150/290 (51%), Positives = 189/290 (65%), Gaps = 7/290 (2%)

Query: 1   MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWE 60
           M  Q +++GHED VHD   DYYGK LAT SSD  IKI  VG    QHL  L GH+G VW+
Sbjct: 1   MATQNVDSGHEDMVHDAQFDYYGKFLATCSSDKMIKIFDVGGENPQHLVDLRGHEGPVWQ 60

Query: 61  VAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLA 120
           VAWAHPKFG ILAS S+D  VI+WKE  +N W   H +  H+ SVNSI WAPHE GL LA
Sbjct: 61  VAWAHPKFGKILASASYDRKVIVWKEVGNNSWSIIHQYAGHELSVNSISWAPHEFGLSLA 120

Query: 121 CGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG---FLDPVQK 177
           C SSDG++++     +  W+  +  Q   +GV SVSW+P+  P +LV S       P+++
Sbjct: 121 CASSDGSVTIHNYN-NNVWEAPQKIQVSQIGVNSVSWSPAAIPTSLVNSANTIIPAPIKR 179

Query: 178 LCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKV 237
           + +G CDN +K++K     W +D    L+ H DWVRDVAWAPN+GLP S IAS S+D  V
Sbjct: 180 IVTGSCDNLIKIFKNVEDKWILD--KQLEDHKDWVRDVAWAPNIGLPYSKIASCSQDRSV 237

Query: 238 IIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287
           I+WT    G  W GK L  F   V+RVSWS+ GNILAV+ G+N VTLW+E
Sbjct: 238 IVWTQDENG-VWSGKPLPKFDDIVWRVSWSVIGNILAVSCGDNQVTLWKE 286

Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. It also functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. SEC13 is required for efficient mRNA export from the nucleus to the cytoplasm and for correct nuclear pore biogenesis and distribution.

Dictyostelium discoideum (taxid: 44689)

>sp|Q4PCB8|SEC13_USTMA Protein transport protein SEC13 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SEC13 PE=3 SV=1

 Score =  271 bits (692), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 151/336 (44%), Positives = 198/336 (58%), Gaps = 54/336 (16%)

Query: 3   PQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAK-LSGHKGAVWEV 61
           P+ IET HED VHD  +D+YGKRLAT SSD ++K+  + N T    A+ L GH+G VW+V
Sbjct: 18  PKNIETQHEDMVHDAQLDFYGKRLATCSSDRTVKVFDIVNGTPSTTAETLHGHQGPVWQV 77

Query: 62  AWAHPKFGSILASCSFDGTVIIWKE-------------GNSNEW------------IKDH 96
           AWAHP FG ILASCS+DG V+IWK+             G+ + +            IK+H
Sbjct: 78  AWAHPTFGDILASCSYDGKVVIWKDNGAGASIGASAPYGSQSAYGAPTSSAGGWTKIKEH 137

Query: 97  VFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVS 156
               H +SVNSI WAPHELG  LAC SSDGN+SV T   DG W    +  AHPVG  +VS
Sbjct: 138 TL--HTASVNSISWAPHELGSILACASSDGNVSVLTFNNDGTWAVDLV-AAHPVGCNAVS 194

Query: 157 WAPSTAPGALVGS------------GFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPA 204
           WAP+  PG+L+ +            G    V++  S GCDNTVK+W+      +     A
Sbjct: 195 WAPAVVPGSLISAQSVGANAGAASNGEAKLVKRFASAGCDNTVKIWEFSQEANRFVEVEA 254

Query: 205 LQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVL---------- 254
           LQ H+DWVRDVA+APN+GLP+S +A+AS+D  V+IWT       W    L          
Sbjct: 255 LQGHSDWVRDVAFAPNVGLPRSYLATASQDRTVLIWTQDSPTAAWSKTALNPISASAAAG 314

Query: 255 ---HDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287
              + F   V+RVSWS++GN+LAV+ G+  +TLW+E
Sbjct: 315 AGSNKFPDTVWRVSWSVSGNVLAVSCGDGKITLWKE 350

Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. It also functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. SEC13 is required for efficient mRNA export from the nucleus to the cytoplasm and for correct nuclear pore biogenesis and distribution.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

>sp|O94319|SEC13_SCHPO Protein transport protein sec13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec13 PE=1 SV=1

 Score =  257 bits (656), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 140/287 (48%), Positives = 185/287 (64%), Gaps = 9/287 (3%)

Query: 6   IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH 65
           ++T H+D +HD  +DYYGKRLAT SSD +IK+  + NN    L  L GH G VW++ WAH
Sbjct: 4   VDTQHDDMIHDAILDYYGKRLATCSSDQTIKVFSIENNQQTLLETLRGHSGPVWQLGWAH 63

Query: 66  PKFGSILASCSFDGTVIIWKE-GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSS 124
           PKFG+ILAS S+DG VI+W+E G     + DH    H++SVN++ WAPHE G  LAC SS
Sbjct: 64  PKFGTILASASYDGHVIVWRETGGVWSELMDHTA--HQASVNAVSWAPHEYGALLACASS 121

Query: 125 DGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCD 184
           DG +SV   + DG  DT RI  AH  G  +V W+P +  G++VG       +KL + GCD
Sbjct: 122 DGKVSVLEFKDDGSCDT-RIFTAHEPGCNAVCWSPPSLSGSVVGQSPAAGPKKLATAGCD 180

Query: 185 NTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR 244
           N VK+W    G+        L  H DW RDVAWAP++GL K+ +ASAS+D  V IWT  +
Sbjct: 181 NLVKIWAFDAGVNNWILEDTLAGHVDWTRDVAWAPSVGLTKTYLASASQDKNVFIWT--K 238

Query: 245 EGD-QWEGKVLHDFKTP--VYRVSWSLTGNILAVADGNNNVTLWEEA 288
           EGD  W+   L + K P   +RVSWSL+GNILAV+ G+N V L++E+
Sbjct: 239 EGDGPWQKTPLTEEKFPDIAWRVSWSLSGNILAVSCGDNKVYLFKES 285

Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. It also functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. SEC13 is required for efficient mRNA export from the nucleus to the cytoplasm and for correct nuclear pore biogenesis and distribution (By similarity). Involved in septum formation.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|A2QHM1|SEC13_ASPNC Protein transport protein sec13 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sec13 PE=3 SV=1

 Score =  254 bits (648), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 145/298 (48%), Positives = 191/298 (64%), Gaps = 15/298 (5%)

Query: 1   MPPQKI-ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVW 59
           M  Q I  +GH++ +HD  +DYYG+RLAT SSD +IKI  +   T + +  L GH+GAVW
Sbjct: 1   MAAQVISNSGHDEMIHDAGLDYYGRRLATCSSDKTIKIFEIEGETHRLIETLKGHEGAVW 60

Query: 60  EVAWAHPKFGSILASCSFDGTVIIWKEGNSN--------EWIKDHVFEDHKSSVNSIDWA 111
            VAWAHPKFG+ILAS S+DG V+IW+E + N         W K   F  H +SVN + WA
Sbjct: 61  CVAWAHPKFGTILASSSYDGKVLIWREQHQNATSPVAGGAWTKVFDFSLHTASVNMVSWA 120

Query: 112 PHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGF 171
           PHE G  LAC SSDG++SV   R D  W T +I  AH +GV S+SWAP+ APG+L+ S  
Sbjct: 121 PHESGCLLACASSDGHVSVLEFR-DNSW-THQIFHAHGMGVNSISWAPAAAPGSLISSNP 178

Query: 172 LDPVQ-KLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIAS 230
               Q +  +GG DN +K+W         +    L+ H+DWVRDVAW+P++ L KS IAS
Sbjct: 179 GPGQQRRFVTGGSDNLLKIWDYNPETKTYNNTQTLEGHSDWVRDVAWSPSV-LSKSYIAS 237

Query: 231 ASEDGKVIIWTV-AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287
           AS+D  V IWT  A    QW  + L +F T ++RVSWS +GNILAV+ G+N V+LW+E
Sbjct: 238 ASQDKTVRIWTSDASNPGQWTSQQL-EFDTVLWRVSWSPSGNILAVSGGDNKVSLWKE 294

Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. It also functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. Sec13 is required for efficient mRNA export from the nucleus to the cytoplasm and for correct nuclear pore biogenesis and distribution.

Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011)

>sp|Q5B563|SEC13_EMENI Protein transport protein sec13 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=sec13 PE=3 SV=1

 Score =  253 bits (646), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 140/290 (48%), Positives = 188/290 (64%), Gaps = 14/290 (4%)

Query: 8   TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPK 67
           +GH+D +HD  +DYYG+RLAT SSD +IKI  +  +T + +  L GH+G VW V WAHPK
Sbjct: 10  SGHDDMIHDAGLDYYGRRLATCSSDKTIKIFEIEGDTHKLVETLKGHEGPVWCVEWAHPK 69

Query: 68  FGSILASCSFDGTVIIWKEGN--------SNEWIKDHVFEDHKSSVNSIDWAPHELGLCL 119
           FG+ILAS S+DG V+IW+E +        S  W K   F  H +SVN I WAPHE G  L
Sbjct: 70  FGTILASSSYDGKVLIWREQHQSSTAPIGSGAWTKVFDFSLHTASVNMISWAPHETGCLL 129

Query: 120 ACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG-FLDPVQKL 178
           AC SSDG++SV   R D  W T +I  AH +GV S+SWAP+ +PG+LV S   +   ++ 
Sbjct: 130 ACASSDGHVSVLEFR-DNSW-THQIFHAHGMGVNSISWAPAASPGSLVSSNPGIGQQRRF 187

Query: 179 CSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVI 238
            +GG DN +K+W         +    L+ H+DWVRDVAW+P++ L KS IASAS+D  V 
Sbjct: 188 VTGGSDNLLKIWDYNPETKTYNATQTLEGHSDWVRDVAWSPSI-LSKSYIASASQDKTVR 246

Query: 239 IWTV-AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287
           +WT  A    QW  +VL +F   ++RVSWS +GNILAV+ G+N V+LW+E
Sbjct: 247 VWTADASNPGQWTSQVL-EFDNVLWRVSWSPSGNILAVSGGDNKVSLWKE 295

Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. It also functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. Sec13 is required for efficient mRNA export from the nucleus to the cytoplasm and for correct nuclear pore biogenesis and distribution.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|Q1DZQ0|SEC13_COCIM Protein transport protein SEC13 OS=Coccidioides immitis (strain RS) GN=SEC13 PE=3 SV=1

 Score =  253 bits (645), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 139/287 (48%), Positives = 189/287 (65%), Gaps = 11/287 (3%)

Query: 8   TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPK 67
           +GH+D +HD  MDYYG+RLAT SSD +IKI  +  ++ + +  L GH+GAVW VAWAHPK
Sbjct: 8   SGHDDMIHDAGMDYYGRRLATCSSDKTIKIFELEGDSHRLIETLKGHEGAVWCVAWAHPK 67

Query: 68  FGSILASCSFDGTVIIWKEGNS-----NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACG 122
           FG+ILAS S+DG V+IW+E +S     + W +   F  H +SVN + WAPHELG  LAC 
Sbjct: 68  FGTILASSSYDGKVLIWREQSSAASTGSSWSRVFDFSLHTASVNMVSWAPHELGCVLACA 127

Query: 123 SSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV-GSGFLDPVQKLCSG 181
           SSDG++SV   R D  W T +I  AH +GV SVSWAP+ APG+++  +     +++  +G
Sbjct: 128 SSDGHVSVLEFR-DNSW-THQIFHAHGMGVNSVSWAPAAAPGSVISATPSTGQIRRFVTG 185

Query: 182 GCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT 241
           G DN VK+W              L+ HT WVRDV+W+P++ L +S IASAS+D  V IWT
Sbjct: 186 GSDNLVKIWDYNPETKTYATSHVLEGHTGWVRDVSWSPSI-LSRSYIASASQDKTVRIWT 244

Query: 242 V-AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287
                 ++W    L +F   V+RVSWSL+GNILAV+ G+N V+LW+E
Sbjct: 245 SDPSNPNEWTSHQL-EFDAVVWRVSWSLSGNILAVSGGDNKVSLWKE 290

Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. It also functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. SEC13 is required for efficient mRNA export from the nucleus to the cytoplasm and for correct nuclear pore biogenesis and distribution.

Coccidioides immitis (strain RS) (taxid: 246410)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
224133388	301	predicted protein [Populus trichocarpa]	1.0	0.956	0.895	1e-150
356567320	301	PREDICTED: protein SEC13 homolog [Glycin	1.0	0.956	0.878	1e-149
224111390	301	predicted protein [Populus trichocarpa]	1.0	0.956	0.881	1e-148
356527095	301	PREDICTED: protein SEC13 homolog [Glycin	1.0	0.956	0.871	1e-147
300392454	301	SEC13 family protein [Lotus japonicus] g	0.975	0.933	0.875	1e-147
356527081	301	PREDICTED: protein SEC13 homolog [Glycin	1.0	0.956	0.868	1e-147
255549858	301	protein transport protein sec13, putativ	1.0	0.956	0.871	1e-147
255639691	301	unknown [Glycine max]	1.0	0.956	0.868	1e-147
356567182	301	PREDICTED: protein SEC13 homolog [Glycin	1.0	0.956	0.864	1e-146
255635473	301	unknown [Glycine max]	1.0	0.956	0.861	1e-146

>gi|224133388|ref|XP_002321555.1| predicted protein [Populus trichocarpa] gi|222868551|gb|EEF05682.1| predicted protein [Populus trichocarpa]

 Score =  535 bits (1378), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 258/288 (89%), Positives = 272/288 (94%)

Query: 1   MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWE 60
           MP QKIETGHEDTVHDVAMDYYGKR+ATASSD+SIKIIGV NNTSQHLA L+GH+G VW+
Sbjct: 1   MPSQKIETGHEDTVHDVAMDYYGKRIATASSDHSIKIIGVNNNTSQHLANLTGHQGPVWQ 60

Query: 61  VAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLA 120
           VAWAHPKFGS+LASCS+DG VIIWKEGN N+W + HVFEDHKSSVNSI WAPHELGL LA
Sbjct: 61  VAWAHPKFGSLLASCSYDGRVIIWKEGNQNDWTQAHVFEDHKSSVNSIAWAPHELGLSLA 120

Query: 121 CGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCS 180
           CGSSDGNISVFTARADG WDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG LDPVQKLCS
Sbjct: 121 CGSSDGNISVFTARADGNWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGLLDPVQKLCS 180

Query: 181 GGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIW 240
           GGCDNTVKVWKLYNG WK+DCFPAL MHTDWVRDVAWAPNLGLPKSTIAS S+DGKVIIW
Sbjct: 181 GGCDNTVKVWKLYNGNWKLDCFPALNMHTDWVRDVAWAPNLGLPKSTIASVSQDGKVIIW 240

Query: 241 TVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288
           TVA+EGDQWEGKVLHDFK PV+RVSWSLTGNILAVADGNNNVTLW+EA
Sbjct: 241 TVAKEGDQWEGKVLHDFKAPVWRVSWSLTGNILAVADGNNNVTLWKEA 288

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567320|ref|XP_003551869.1| PREDICTED: protein SEC13 homolog [Glycine max]

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 253/288 (87%), Positives = 273/288 (94%)

Query: 1   MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWE 60
           MP QK+ETGH+DTVHDVAMDYYGKRLATASSD++IKIIGV N  SQHLA L+GH+G VW+
Sbjct: 1   MPSQKVETGHQDTVHDVAMDYYGKRLATASSDHTIKIIGVSNTASQHLATLTGHQGPVWQ 60

Query: 61  VAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLA 120
           V WAHPKFGS+LASCSFDG VI+WKEGN NEW + HVF+DHKSSVNS+ WAPHELGLCLA
Sbjct: 61  VVWAHPKFGSLLASCSFDGRVIVWKEGNQNEWTQAHVFDDHKSSVNSVAWAPHELGLCLA 120

Query: 121 CGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCS 180
           CGSSDGNISVFTARADGGWDT+RIDQAHPVGVTSVSWAPS APGALVG+G LDPVQKLCS
Sbjct: 121 CGSSDGNISVFTARADGGWDTARIDQAHPVGVTSVSWAPSMAPGALVGAGLLDPVQKLCS 180

Query: 181 GGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIW 240
           GGCDNTVKVWKL NG+WKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASAS+DGKVIIW
Sbjct: 181 GGCDNTVKVWKLNNGLWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGKVIIW 240

Query: 241 TVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288
           TVA+EGDQWEGKVL+DFKTPV+RVSWSLTGNILAVADGNNNVTLW+EA
Sbjct: 241 TVAKEGDQWEGKVLNDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEA 288

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111390|ref|XP_002315836.1| predicted protein [Populus trichocarpa] gi|118481620|gb|ABK92752.1| unknown [Populus trichocarpa] gi|118482201|gb|ABK93029.1| unknown [Populus trichocarpa] gi|222864876|gb|EEF02007.1| predicted protein [Populus trichocarpa]

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 254/288 (88%), Positives = 272/288 (94%)

Query: 1   MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWE 60
           MP QKIETGHEDTVHDVAMDYYGKR+ATASSD+SIKI+GV NN+SQHLA L+GH+G VW+
Sbjct: 1   MPSQKIETGHEDTVHDVAMDYYGKRIATASSDHSIKIVGVNNNSSQHLANLTGHQGPVWQ 60

Query: 61  VAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLA 120
           VAWAHPKFGS+LASCS+DG VIIWKEGN N+WI+ HVF+DHKSSVNSI WAPHELGLCLA
Sbjct: 61  VAWAHPKFGSLLASCSYDGRVIIWKEGNQNDWIQAHVFDDHKSSVNSIAWAPHELGLCLA 120

Query: 121 CGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCS 180
           CGSSDGNISVFTARADG WDTSRIDQAHP GVTSVSWAPSTAPGALVGSG LDP QKLCS
Sbjct: 121 CGSSDGNISVFTARADGNWDTSRIDQAHPAGVTSVSWAPSTAPGALVGSGLLDPAQKLCS 180

Query: 181 GGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIW 240
           GGCDNTVKVWKLYNG WK+DCFPAL MH DWVRDVAWAPNLGLPKSTIASAS+DGKVIIW
Sbjct: 181 GGCDNTVKVWKLYNGNWKLDCFPALNMHADWVRDVAWAPNLGLPKSTIASASQDGKVIIW 240

Query: 241 TVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288
           TVA+EGDQWEGKVLHDFK PV+RVSWSLTGNILAVADGN+NVTLW+EA
Sbjct: 241 TVAKEGDQWEGKVLHDFKAPVWRVSWSLTGNILAVADGNSNVTLWKEA 288

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527095|ref|XP_003532149.1| PREDICTED: protein SEC13 homolog [Glycine max]

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 251/288 (87%), Positives = 271/288 (94%)

Query: 1   MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWE 60
           MP QK+ETGH+DTVHDVAMDYYGKRLATASSD++IKIIGV N  SQHLA L+GH+G VW+
Sbjct: 1   MPSQKVETGHQDTVHDVAMDYYGKRLATASSDHTIKIIGVSNTASQHLATLTGHQGPVWQ 60

Query: 61  VAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLA 120
           VAWAHPKFGS+LASCS+DG VI+WKEGN NEW + HVF+DHKSSVNS+ WAPHELGLCLA
Sbjct: 61  VAWAHPKFGSLLASCSYDGRVIVWKEGNQNEWTQAHVFDDHKSSVNSVAWAPHELGLCLA 120

Query: 121 CGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCS 180
           CGSSDGNISV TARADGGWDT RIDQAHPVGVTSVSWAPS APGALVG+G LDPVQKLCS
Sbjct: 121 CGSSDGNISVLTARADGGWDTVRIDQAHPVGVTSVSWAPSMAPGALVGAGLLDPVQKLCS 180

Query: 181 GGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIW 240
           GGCDNTVKVWKL NG+WKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASAS+DGKVIIW
Sbjct: 181 GGCDNTVKVWKLNNGLWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGKVIIW 240

Query: 241 TVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288
           TVA+EGDQWEGKVL+DF TPV+RVSWSLTGNILAVADGNNNVTLW+EA
Sbjct: 241 TVAKEGDQWEGKVLNDFNTPVWRVSWSLTGNILAVADGNNNVTLWKEA 288

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|300392454|dbj|BAJ10727.1| SEC13 family protein [Lotus japonicus] gi|388515669|gb|AFK45896.1| unknown [Lotus japonicus]

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 252/288 (87%), Positives = 272/288 (94%)

Query: 1   MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWE 60
           MP QK+ETGH+DTVHDVAMDYYGKRLATASSD++IKIIGV N  SQHLA L+GH+G VW+
Sbjct: 1   MPAQKVETGHQDTVHDVAMDYYGKRLATASSDHTIKIIGVSNTASQHLATLAGHQGPVWQ 60

Query: 61  VAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLA 120
           VAWAHPKFGS++ASCS+DG VIIWKEGN NEWI+ HVF+DHKSSVNS+ WAPHELGLCLA
Sbjct: 61  VAWAHPKFGSMIASCSYDGRVIIWKEGNQNEWIQAHVFDDHKSSVNSVVWAPHELGLCLA 120

Query: 121 CGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCS 180
           CGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPS APGALVG+G LDPVQKLCS
Sbjct: 121 CGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSMAPGALVGAGLLDPVQKLCS 180

Query: 181 GGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIW 240
           GGCDNTVKVWKL NG WKMDCFPAL MHTDWVRDVAWAPNLGLPKSTIASAS+DGKVIIW
Sbjct: 181 GGCDNTVKVWKLTNGNWKMDCFPALHMHTDWVRDVAWAPNLGLPKSTIASASQDGKVIIW 240

Query: 241 TVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288
           TV +EGDQWEGK+L+DFKTPV+RVSWSLTGNILAVADGNNNVTLW+EA
Sbjct: 241 TVGKEGDQWEGKILNDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEA 288

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527081|ref|XP_003532142.1| PREDICTED: protein SEC13 homolog [Glycine max]

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 250/288 (86%), Positives = 272/288 (94%)

Query: 1   MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWE 60
           MP QK+ETGH+DTVHDVAMDYYGKRLATASSD++IKIIGV N+ SQHLA L+GH+G VW+
Sbjct: 1   MPSQKVETGHQDTVHDVAMDYYGKRLATASSDHTIKIIGVSNSASQHLATLTGHQGPVWQ 60

Query: 61  VAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLA 120
           V WAHPKFGS+LASCS+DG VI+WKEGN NEW + HVF+DHKSSVNS+ WAPHELGLCLA
Sbjct: 61  VVWAHPKFGSLLASCSYDGRVIVWKEGNQNEWTQAHVFDDHKSSVNSVAWAPHELGLCLA 120

Query: 121 CGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCS 180
           CGSSDGNISV TARADGGWDT+RIDQAHPVGVTSVSWAPS APGALVG+G LDPVQKLCS
Sbjct: 121 CGSSDGNISVLTARADGGWDTARIDQAHPVGVTSVSWAPSMAPGALVGAGLLDPVQKLCS 180

Query: 181 GGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIW 240
           GGCDNTVKVWKL NG+WKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASAS+DGKVIIW
Sbjct: 181 GGCDNTVKVWKLNNGLWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGKVIIW 240

Query: 241 TVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288
           TVA+EGDQWEGKVL+DF TPV+RVSWSLTGNILAVADGNNNVTLW+EA
Sbjct: 241 TVAKEGDQWEGKVLNDFNTPVWRVSWSLTGNILAVADGNNNVTLWKEA 288

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549858|ref|XP_002515980.1| protein transport protein sec13, putative [Ricinus communis] gi|223544885|gb|EEF46400.1| protein transport protein sec13, putative [Ricinus communis]

 Score =  525 bits (1353), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 251/288 (87%), Positives = 272/288 (94%)

Query: 1   MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWE 60
           MPPQKIETGHEDT+HDV MDYYGKR+ATASSD+SIKIIGV NNTSQ LAKL+GH+G VW+
Sbjct: 1   MPPQKIETGHEDTIHDVVMDYYGKRIATASSDHSIKIIGVSNNTSQQLAKLTGHQGPVWQ 60

Query: 61  VAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLA 120
           VAWAHPKFGS+LASCS+DG VIIWKEG  N+W + HVF+DHKSSVNSI WAPHE+GLCLA
Sbjct: 61  VAWAHPKFGSLLASCSYDGRVIIWKEGVQNDWTQAHVFDDHKSSVNSIAWAPHEVGLCLA 120

Query: 121 CGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCS 180
           CGSSDGNISV T RADGGWD S I+QAHPVGVTSVSWAPSTAPGALVGSG LDPVQKLCS
Sbjct: 121 CGSSDGNISVLTVRADGGWDKSNIEQAHPVGVTSVSWAPSTAPGALVGSGLLDPVQKLCS 180

Query: 181 GGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIW 240
           GGCDNTVKVWKLYNG WKMDCFPALQ+HTDWVRDVAWAPNLGLPKSTIASAS+DGKVIIW
Sbjct: 181 GGCDNTVKVWKLYNGNWKMDCFPALQLHTDWVRDVAWAPNLGLPKSTIASASQDGKVIIW 240

Query: 241 TVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288
           TVA+EGDQWEGKVLHDFK+PV+RVSWSLTGNILAVA+G+NNVTLW+EA
Sbjct: 241 TVAKEGDQWEGKVLHDFKSPVWRVSWSLTGNILAVAEGSNNVTLWKEA 288

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255639691|gb|ACU20139.1| unknown [Glycine max]

 Score =  525 bits (1353), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 250/288 (86%), Positives = 270/288 (93%)

Query: 1   MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWE 60
           MP QK+ETGH+DTVHDVAMDYYGKRLATASSD++IKIIGV N  SQHLA L+GH+G VW+
Sbjct: 1   MPSQKVETGHQDTVHDVAMDYYGKRLATASSDHTIKIIGVSNTASQHLATLTGHQGPVWQ 60

Query: 61  VAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLA 120
           VAWAHPKFGS+LASCS+DG VI+WKEGN NEW + HVF+DHKSSVNS+ WAPHELGLCLA
Sbjct: 61  VAWAHPKFGSLLASCSYDGRVIVWKEGNQNEWTQAHVFDDHKSSVNSVAWAPHELGLCLA 120

Query: 121 CGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCS 180
           CGSSDGNISV TARADGGWDT  IDQAHPVGVTSVSWAPS APGALVG+G LDPVQKLCS
Sbjct: 121 CGSSDGNISVLTARADGGWDTVSIDQAHPVGVTSVSWAPSMAPGALVGAGLLDPVQKLCS 180

Query: 181 GGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIW 240
           GGCDNTVKVWKL NG+WKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASAS+DGKVIIW
Sbjct: 181 GGCDNTVKVWKLNNGLWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGKVIIW 240

Query: 241 TVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288
           TVA+EGDQWEGKVL+DF TPV+RVSWSLTGNILAVADGNNNVTLW+EA
Sbjct: 241 TVAKEGDQWEGKVLNDFNTPVWRVSWSLTGNILAVADGNNNVTLWKEA 288

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567182|ref|XP_003551800.1| PREDICTED: protein SEC13 homolog [Glycine max]

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 249/288 (86%), Positives = 270/288 (93%)

Query: 1   MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWE 60
           MP QK+ETGH+DTVHDVAMDYYGKRLATASSD++IKIIGV N  SQHLA L+GH+G VW+
Sbjct: 1   MPSQKVETGHQDTVHDVAMDYYGKRLATASSDHTIKIIGVSNTASQHLATLTGHQGPVWQ 60

Query: 61  VAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLA 120
           VAWAHPKFGS+LASCS+DG VI+WKEGN NEW + HVF+DHKSSVNS+ W PHELGLCLA
Sbjct: 61  VAWAHPKFGSLLASCSYDGRVIVWKEGNQNEWTQAHVFDDHKSSVNSVAWVPHELGLCLA 120

Query: 121 CGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCS 180
           CGSSDGNISV TARADGGWDT+RIDQAHPVGVTSVSWAPS APGALVG G LDPVQKLCS
Sbjct: 121 CGSSDGNISVVTARADGGWDTARIDQAHPVGVTSVSWAPSMAPGALVGGGLLDPVQKLCS 180

Query: 181 GGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIW 240
           GGCDNTVKVWKL NG+WKMDCFPALQMH DWVRDVAWAPNLGLPKSTIASAS+DGKVIIW
Sbjct: 181 GGCDNTVKVWKLNNGLWKMDCFPALQMHMDWVRDVAWAPNLGLPKSTIASASQDGKVIIW 240

Query: 241 TVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288
           TVA++GDQWEGKVL+DFKTPV+RVSWSLTGNILAVADGNNNVTLW+EA
Sbjct: 241 TVAKDGDQWEGKVLNDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEA 288

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255635473|gb|ACU18089.1| unknown [Glycine max]

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 248/288 (86%), Positives = 269/288 (93%)

Query: 1   MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWE 60
           MP QK+ETGH+DTVHDVAMDYYGKRLATASSD++IKIIGV N  SQHLA L+GH+G VW+
Sbjct: 1   MPSQKVETGHQDTVHDVAMDYYGKRLATASSDHTIKIIGVSNTASQHLATLTGHQGPVWQ 60

Query: 61  VAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLA 120
           VAWAHPKFGS+LASCS+DG  I+WKEGN NEW + HVF+DHKSSVNS+ W PHELGLCLA
Sbjct: 61  VAWAHPKFGSLLASCSYDGRAIVWKEGNQNEWTQAHVFDDHKSSVNSVAWVPHELGLCLA 120

Query: 121 CGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCS 180
           CGSSDGNISV TARADGGWDT+RIDQAHPVGVTSVSWAPS APGALVG G LDPVQKLCS
Sbjct: 121 CGSSDGNISVVTARADGGWDTARIDQAHPVGVTSVSWAPSMAPGALVGGGLLDPVQKLCS 180

Query: 181 GGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIW 240
           GGCDNTVKVWKL NG+WKMDCFPALQMH DWVRDVAWAPNLGLPKSTIASAS+DGKVIIW
Sbjct: 181 GGCDNTVKVWKLNNGLWKMDCFPALQMHMDWVRDVAWAPNLGLPKSTIASASQDGKVIIW 240

Query: 241 TVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288
           TVA++GDQWEGKVL+DFKTPV+RVSWSLTGNILAVADGNNNVTLW+EA
Sbjct: 241 TVAKDGDQWEGKVLNDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEA 288

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
TAIR|locus:2045648	302	AT2G30050 "AT2G30050" [Arabido	1.0	0.953	0.833	4.1e-136
TAIR|locus:2100267	302	AT3G01340 "AT3G01340" [Arabido	1.0	0.953	0.792	2.1e-132
ZFIN|ZDB-GENE-040426-2649	320	sec13 "SEC13 homolog (S. cerev	0.972	0.875	0.550	1.7e-84
UNIPROTKB|E1BVC4	320	SEC13 "Uncharacterized protein	0.972	0.875	0.543	4.4e-84
UNIPROTKB|F1PDM3	322	SEC13 "Uncharacterized protein	0.972	0.869	0.545	1.5e-83
MGI|MGI:99832	322	Sec13 "SEC13 homolog (S. cerev	0.972	0.869	0.541	1.9e-83
RGD|1359555	322	Sec13 "SEC13 homolog (S. cerev	0.972	0.869	0.541	1.9e-83
UNIPROTKB|Q3ZCC9	322	SEC13 "Protein SEC13 homolog"	0.972	0.869	0.541	1e-82
UNIPROTKB|P55735	322	SEC13 "Protein SEC13 homolog"	0.972	0.869	0.534	2.2e-82
FB|FBgn0024509	386	Sec13 "Sec13 ortholog (S. cere	0.975	0.727	0.510	3e-78

TAIR|locus:2045648 AT2G30050 "AT2G30050" [Arabidopsis thaliana (taxid:3702)]

 Score = 1333 (474.3 bits), Expect = 4.1e-136, P = 4.1e-136
 Identities = 241/289 (83%), Positives = 261/289 (90%)

Query:     1 MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNT-SQHLAKLSGHKGAVW 59
             MP QKIETGHED VHDV MDYYGKR+ATASSD +IKI GV NN  SQ LA L+GH+G VW
Sbjct:     1 MPGQKIETGHEDIVHDVQMDYYGKRIATASSDCTIKITGVSNNGGSQQLATLTGHRGPVW 60

Query:    60 EVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCL 119
             EVAWAHPK+GSILASCS+DG VI+WKEGN N+W +DHVF DHKSSVNSI WAPH++GL L
Sbjct:    61 EVAWAHPKYGSILASCSYDGQVILWKEGNQNQWTQDHVFTDHKSSVNSIAWAPHDIGLSL 120

Query:   120 ACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLC 179
             ACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAP+TAPGALV SG LDPV KL 
Sbjct:   121 ACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPATAPGALVSSGLLDPVYKLA 180

Query:   180 SGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVII 239
             SGGCDNTVKVWKL NG WKMDCFPALQ HTDWVRDVAWAPNLGLPKSTIAS S+DGKVII
Sbjct:   181 SGGCDNTVKVWKLANGSWKMDCFPALQKHTDWVRDVAWAPNLGLPKSTIASGSQDGKVII 240

Query:   240 WTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288
             WTV +EG+QWEGKVL DF TPV+RVSWSLTGN+LAV+DGNNNVT+W+EA
Sbjct:   241 WTVGKEGEQWEGKVLKDFMTPVWRVSWSLTGNLLAVSDGNNNVTVWKEA 289

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005643 "nuclear pore" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0006900 "membrane budding" evidence=ISS

TAIR|locus:2100267 AT3G01340 "AT3G01340" [Arabidopsis thaliana (taxid:3702)]

 Score = 1298 (462.0 bits), Expect = 2.1e-132, P = 2.1e-132
 Identities = 229/289 (79%), Positives = 258/289 (89%)

Query:     1 MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNT-SQHLAKLSGHKGAVW 59
             MPPQKIETGH DT+HDV MDYYGKR+ATASSD +IKI GV N+  SQHLA L+GH+G VW
Sbjct:     1 MPPQKIETGHSDTIHDVVMDYYGKRVATASSDCTIKITGVSNSGGSQHLATLTGHRGPVW 60

Query:    60 EVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCL 119
             +VAWAHPKFGS+LASCS+DG +I+WKEGN N+W + HVF DHK SVNSI WAPHELGL L
Sbjct:    61 QVAWAHPKFGSLLASCSYDGQIILWKEGNQNQWTQAHVFTDHKVSVNSIAWAPHELGLSL 120

Query:   120 ACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLC 179
             ACG+SDGNISVF+ARADGGWDT++IDQAHPVGVTSVSWAP+T PGALV SG +DPV KL 
Sbjct:   121 ACGASDGNISVFSARADGGWDTTKIDQAHPVGVTSVSWAPATEPGALVSSGMIDPVYKLA 180

Query:   180 SGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVII 239
             SGGCD+TVKVWK  NG WKMDCFPAL  HTDWVRDVAWAPNLGLPKSTIAS SEDGKVII
Sbjct:   181 SGGCDSTVKVWKFSNGSWKMDCFPALNKHTDWVRDVAWAPNLGLPKSTIASGSEDGKVII 240

Query:   240 WTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288
             WT+ +EG+QWEG VL DFKTPV+RVSWSLTGN+LAV+DGNNNVT+W+E+
Sbjct:   241 WTIGKEGEQWEGTVLKDFKTPVWRVSWSLTGNLLAVSDGNNNVTVWKES 289

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006900 "membrane budding" evidence=ISS

ZFIN|ZDB-GENE-040426-2649 sec13 "SEC13 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
 Identities = 158/287 (55%), Positives = 199/287 (69%)

Query:     6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH 65
             ++T HED +HD  MDYYG RLAT SSD S+KI  V N     +A L GH+G VW+VAWAH
Sbjct:     8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVKNGGQILVADLRGHEGPVWQVAWAH 67

Query:    66 PKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125
             P +G+ILASCS+D  VIIWKE NS  W K + +  H SSVNS+ W P++ GL LACGSSD
Sbjct:    68 PMYGNILASCSYDRKVIIWKEENST-WDKMYEYTGHDSSVNSVCWGPYDFGLILACGSSD 126

Query:   126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGF-LDP--VQKLCSGG 182
             G ISV T   DG WD  +I+ AH +G  +VSWAP+  PG+L+       P  +++  SGG
Sbjct:   127 GAISVLTCSGDGHWDIKKINNAHTIGCNAVSWAPAVVPGSLIEQPTGQKPNYIKRFVSGG 186

Query:   183 CDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV 242
             CDN VK+WK  +G WK D    L+ H+DWVRDV WAP++GLP STIAS S+DG+V IWT 
Sbjct:   187 CDNLVKLWKEEDGQWKED--QKLEAHSDWVRDVGWAPSIGLPTSTIASCSQDGRVFIWTC 244

Query:   243 ARE-GDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288
                 G+ W  K+LH F   V+ VSWS+TGNILAV+ G+N VTLW+E+
Sbjct:   245 DDPAGNTWTAKLLHKFNDVVWHVSWSITGNILAVSGGDNKVTLWKES 291

GO:0003674 "molecular_function" evidence=ND

GO:0055123 "digestive system development" evidence=IMP

GO:0001889 "liver development" evidence=IMP

GO:0070971 "endoplasmic reticulum exit site" evidence=IDA

GO:0007029 "endoplasmic reticulum organization" evidence=IMP

GO:0051216 "cartilage development" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISS

GO:0070278 "extracellular matrix constituent secretion" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

UNIPROTKB|E1BVC4 SEC13 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
 Identities = 156/287 (54%), Positives = 199/287 (69%)

Query:     6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH 65
             ++T HED +HD  MDYYG RLAT SSD S+KI  V N     +A L GH+G VW+VAWAH
Sbjct:     8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAH 67

Query:    66 PKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125
             P +G+ILASCS+D  VIIWKE N   W K + +  H SSVNS+ WAPH+ GL LACGSSD
Sbjct:    68 PMYGNILASCSYDRKVIIWKEENGT-WEKTYEYTGHDSSVNSVCWAPHDYGLILACGSSD 126

Query:   126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG--SGFL-DPVQKLCSGG 182
             G IS+ +   DG W+  +I  AH +G  +VSWAP+  PG+L+   SG   + +++  SGG
Sbjct:   127 GAISLLSYTGDGQWEVKKISNAHTIGCNAVSWAPAVVPGSLIEQPSGQKPNYIKRFASGG 186

Query:   183 CDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV 242
             CDN VK+WK  +G WK +    L+ H+DWVRDVAWAP++GLP STIAS S+DG+V IWT 
Sbjct:   187 CDNLVKIWKEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTC 244

Query:   243 A-REGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288
                 G  W  K+LH F   V+ VSWS+T NILAV+ G+N VTLW+E+
Sbjct:   245 DDASGSSWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 291

GO:0000776 "kinetochore" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

UNIPROTKB|F1PDM3 SEC13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
 Identities = 157/288 (54%), Positives = 200/288 (69%)

Query:     6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH 65
             ++T HED +HD  MDYYG RLAT SSD S+KI  V N     +A L GH+G VW+VAWAH
Sbjct:     8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAH 67

Query:    66 PKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125
             P +G+ILASCS+D  VIIWKE N   W K H    H SSVNS+ WAPH+ GL LACGSSD
Sbjct:    68 PMYGNILASCSYDRKVIIWKEENGT-WEKTHEHTGHDSSVNSVCWAPHDYGLILACGSSD 126

Query:   126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG--SGFL-DPVQKLCSGG 182
             G IS+ T   +G W+  +I+ AH +G  +VSWAP+  PG+L+   SG   + ++K  SGG
Sbjct:   127 GAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGG 186

Query:   183 CDNTVKVWKLY-NGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT 241
             CDN +K+WK   +G WK +    L+ H+DWVRDVAWAP++GLP STIAS S+DG+V IWT
Sbjct:   187 CDNLIKLWKEEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244

Query:   242 VA-REGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288
                  G+ W  K+LH F   V+ VSWS+T NILAV+ G+N VTLW+E+
Sbjct:   245 CDDTSGNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292

GO:0005635 "nuclear envelope" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

MGI|MGI:99832 Sec13 "SEC13 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
 Identities = 156/288 (54%), Positives = 200/288 (69%)

Query:     6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH 65
             ++T HED +HD  MDYYG RLAT SSD S+KI  V N     +A L GH+G VW+VAWAH
Sbjct:     8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAH 67

Query:    66 PKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125
             P +G+ILASCS+D  VIIWKE N   W K H    H SSVNS+ WAPH+ GL LACGSSD
Sbjct:    68 PMYGNILASCSYDRKVIIWKEENGT-WEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSD 126

Query:   126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG--SGFL-DPVQKLCSGG 182
             G IS+ T   +G W+  +I+ AH +G  +VSWAP+  PG+L+   SG   + ++K  SGG
Sbjct:   127 GAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGG 186

Query:   183 CDNTVKVWKLY-NGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT 241
             CDN +K+W+   +G WK +    L+ H+DWVRDVAWAP++GLP STIAS S+DG+V IWT
Sbjct:   187 CDNLIKLWREEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244

Query:   242 VA-REGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288
                  G+ W  K+LH F   V+ VSWS+T NILAV+ G+N VTLW+E+
Sbjct:   245 CDDASGNMWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292

GO:0005634 "nucleus" evidence=IEA

GO:0005635 "nuclear envelope" evidence=ISO

GO:0005643 "nuclear pore" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0031080 "nuclear pore outer ring" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

RGD|1359555 Sec13 "SEC13 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
 Identities = 156/288 (54%), Positives = 200/288 (69%)

Query:     6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH 65
             ++T HED +HD  MDYYG RLAT SSD S+KI  V N     +A L GH+G VW+VAWAH
Sbjct:     8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAH 67

Query:    66 PKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125
             P +G+ILASCS+D  VIIWKE N   W K H    H SSVNS+ WAPH+ GL LACGSSD
Sbjct:    68 PMYGNILASCSYDRKVIIWKEENGT-WEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSD 126

Query:   126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG--SGFL-DPVQKLCSGG 182
             G IS+ T   +G W+  +I+ AH +G  +VSWAP+  PG+L+   SG   + ++K  SGG
Sbjct:   127 GAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGG 186

Query:   183 CDNTVKVWKLY-NGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT 241
             CDN +K+W+   +G WK +    L+ H+DWVRDVAWAP++GLP STIAS S+DG+V IWT
Sbjct:   187 CDNLIKLWREEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244

Query:   242 VA-REGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288
                  G+ W  K+LH F   V+ VSWS+T NILAV+ G+N VTLW+E+
Sbjct:   245 CDDASGNMWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292

GO:0005635 "nuclear envelope" evidence=ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IDA

GO:0012507 "ER to Golgi transport vesicle membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0031080 "nuclear pore outer ring" evidence=ISO;ISS

GO:0051028 "mRNA transport" evidence=IEA

GO:0000776 "kinetochore" evidence=ISO

UNIPROTKB|Q3ZCC9 SEC13 "Protein SEC13 homolog" [Bos taurus (taxid:9913)]

 Score = 829 (296.9 bits), Expect = 1.0e-82, P = 1.0e-82
 Identities = 156/288 (54%), Positives = 199/288 (69%)

Query:     6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH 65
             ++T HED +HD  MDYYG RLAT SSD S+KI  V N     +A L GH+G VW+VAWAH
Sbjct:     8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILVADLRGHEGPVWQVAWAH 67

Query:    66 PKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125
             P +G+ILASCS+D  VIIWKE N   W K H    H SSVNS+ WAPH+ GL LACGSSD
Sbjct:    68 PMYGNILASCSYDRKVIIWKEENGT-WEKTHEHTGHDSSVNSVCWAPHDYGLILACGSSD 126

Query:   126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG--SGFL-DPVQKLCSGG 182
             G IS+ T    G W+  +I+ AH +G  +VSWAP+  PG+L+   SG   + ++K  SGG
Sbjct:   127 GAISLLTYTGLGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGG 186

Query:   183 CDNTVKVWKLY-NGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT 241
             CDN +K+WK   +G WK +    L+ H+DWVRDVAWAP++GLP STIAS S+DG+V +WT
Sbjct:   187 CDNLIKLWKEEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFVWT 244

Query:   242 VA-REGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288
                  G+ W  K+LH F   V+ VSWS+T NILAV+ G+N VTLW+E+
Sbjct:   245 CDDASGNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292

GO:0031080 "nuclear pore outer ring" evidence=ISS

GO:0012507 "ER to Golgi transport vesicle membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|P55735 SEC13 "Protein SEC13 homolog" [Homo sapiens (taxid:9606)]

 Score = 826 (295.8 bits), Expect = 2.2e-82, P = 2.2e-82
 Identities = 154/288 (53%), Positives = 199/288 (69%)

Query:     6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH 65
             ++T HED +HD  MDYYG RLAT SSD S+KI  V N     +A L GH+G VW+VAWAH
Sbjct:     8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAH 67

Query:    66 PKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125
             P +G+ILASCS+D  VIIW+E N   W K H    H SSVNS+ WAPH+ GL LACGSSD
Sbjct:    68 PMYGNILASCSYDRKVIIWREENGT-WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD 126

Query:   126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG--SGFL-DPVQKLCSGG 182
             G IS+ T   +G W+  +I+ AH +G  +VSWAP+  PG+L+   SG   + +++  SGG
Sbjct:   127 GAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG 186

Query:   183 CDNTVKVWKLY-NGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT 241
             CDN +K+WK   +G WK +    L+ H+DWVRDVAWAP++GLP STIAS S+DG+V IWT
Sbjct:   187 CDNLIKLWKEEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244

Query:   242 VA-REGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288
                   + W  K+LH F   V+ VSWS+T NILAV+ G+N VTLW+E+
Sbjct:   245 CDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292

GO:0051028 "mRNA transport" evidence=IEA

GO:0031080 "nuclear pore outer ring" evidence=NAS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005635 "nuclear envelope" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=NAS

GO:0000776 "kinetochore" evidence=IDA

GO:0000087 "M phase of mitotic cell cycle" evidence=TAS

GO:0000236 "mitotic prometaphase" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=TAS

GO:0012507 "ER to Golgi transport vesicle membrane" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0048208 "COPII vesicle coating" evidence=TAS

FB|FBgn0024509 Sec13 "Sec13 ortholog (S. cerevisiae)" [Drosophila melanogaster (taxid:7227)]

 Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
 Identities = 147/288 (51%), Positives = 195/288 (67%)

Query:     4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAW 63
             Q+I+T HED VH  A+D+YG  LAT SSD S++I     N ++ LA+L GH+G VW+VAW
Sbjct:    36 QEIDTEHEDMVHHAALDFYGLLLATCSSDGSVRIFHSRKN-NKALAELKGHQGPVWQVAW 94

Query:    64 AHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGS 123
             AHPKFG+ILASCS+D  VI+WK     +W K + + +H SSVNS+D+AP E GL LAC S
Sbjct:    95 AHPKFGNILASCSYDRKVIVWKSTTPRDWTKLYEYSNHDSSVNSVDFAPSEYGLVLACAS 154

Query:   124 SDGNISVFTARADGG-WDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLD---PVQKLC 179
             SDG++SV T   + G WD  +I  AH +GV ++SW P+ AP              V++L 
Sbjct:   155 SDGSVSVLTCNTEYGVWDAKKIPNAHTIGVNAISWCPAQAPDPAFDQRVTSRSAAVKRLV 214

Query:   180 SGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVII 239
             SGGCDN VK+W+  N  W  +    L+ H+DWVRDVAWAP++GLP+S IA+AS+D  VI+
Sbjct:   215 SGGCDNLVKIWREDNDRWVEE--HRLEAHSDWVRDVAWAPSIGLPRSQIATASQDRHVIV 272

Query:   240 WTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287
             W+   +  +W   VLH F   V+ +SWS TGNILAV  G+NNVTLW+E
Sbjct:   273 WSSNADLSEWTSTVLHTFDDAVWSISWSTTGNILAVTGGDNNVTLWKE 320

GO:0006900 "membrane budding" evidence=ISS

GO:0008363 "larval chitin-based cuticle development" evidence=IMP

GO:0035293 "chitin-based larval cuticle pattern formation" evidence=IMP

GO:0010629 "negative regulation of gene expression" evidence=IDA

GO:0031080 "nuclear pore outer ring" evidence=ISS

GO:0007184 "SMAD protein import into nucleus" evidence=IMP

GO:0006607 "NLS-bearing substrate import into nucleus" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2GSM6	SEC13_CHAGB	No assigned EC number	0.5035	0.9340	0.9275	N/A	no
A2QHM1	SEC13_ASPNC	No assigned EC number	0.4865	0.9826	0.9188	yes	no
Q2UG43	SEC13_ASPOR	No assigned EC number	0.4860	0.9305	0.9115	yes	no
P0CS50	SEC13_CRYNJ	No assigned EC number	0.4394	0.9791	0.8318	yes	no
P53024	SEC13_PICPG	No assigned EC number	0.4788	0.9375	0.9342	yes	no
Q6FNV4	SC131_CANGA	No assigned EC number	0.4596	0.9722	0.9395	yes	no
Q6CSZ5	SEC13_KLULA	No assigned EC number	0.4618	0.9687	0.9238	yes	no
Q3ZCC9	SEC13_BOVIN	No assigned EC number	0.5347	0.9722	0.8695	yes	no
Q5XFW8	SEC13_RAT	No assigned EC number	0.5347	0.9722	0.8695	yes	no
Q9D1M0	SEC13_MOUSE	No assigned EC number	0.5347	0.9722	0.8695	yes	no
Q54DS8	SEC13_DICDI	No assigned EC number	0.5172	0.9826	0.9401	yes	no
Q6BIR1	SEC13_DEBHA	No assigned EC number	0.4583	0.9548	0.9259	yes	no
Q4WNK7	SEC13_ASPFU	No assigned EC number	0.4911	0.9340	0.8790	yes	no
Q75BS2	SEC13_ASHGO	No assigned EC number	0.4577	0.9583	0.9355	yes	no
P55735	SEC13_HUMAN	No assigned EC number	0.5277	0.9722	0.8695	yes	no
Q9N4A7	SEC13_CAEEL	No assigned EC number	0.3737	0.9479	0.8722	yes	no
Q5B563	SEC13_EMENI	No assigned EC number	0.4827	0.9583	0.8932	yes	no
Q04491	SEC13_YEAST	No assigned EC number	0.4718	0.9652	0.9360	yes	no
O94319	SEC13_SCHPO	No assigned EC number	0.4878	0.9652	0.9360	yes	no
A3LNW3	SEC13_PICST	No assigned EC number	0.4689	0.9618	0.9172	yes	no
Q6BZX5	SEC13_YARLI	No assigned EC number	0.4809	0.9513	0.9194	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_XV0440	hypothetical protein (301 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.70.277.1	hypothetical protein (1076 aa)						•	•		0.848
	estExt_Genewise1_v1.C_LG_XIII1353	hypothetical protein (1103 aa)						•	•		0.847
	estExt_fgenesh4_pg.C_LG_VIII0404	hypothetical protein (1043 aa)					•	•	•		0.842
	eugene3.00102048	hypothetical protein (1037 aa)					•	•	•		0.840
	fgenesh4_pg.C_LG_I002546	protein transport protein sec23 (775 aa)						•			0.834
	estExt_Genewise1_v1.C_1170182	protein transport protein sec23 (778 aa)						•			0.834
	estExt_fgenesh4_pg.C_LG_XIV1163	protein transport protein sec23 (773 aa)						•			0.831
	gw1.X.5636.1	protein transport protein sec23 (753 aa)						•			0.826
	estExt_Genewise1_v1.C_LG_II1291	hypothetical protein (622 aa)						•	•		0.824
	fgenesh4_pg.C_LG_XI001276	hypothetical protein (1007 aa)						•	•		0.810

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	288
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-30
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-30
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-24
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-23
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-17
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-16
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-12
smart00320	40	smart00320, WD40, WD40 repeats	2e-05
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	4e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	6e-05
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	2e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-04
smart00320	40	smart00320, WD40, WD40 repeats	5e-04
smart00320	40	smart00320, WD40, WD40 repeats	0.001
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  115 bits (291), Expect = 1e-30
 Identities = 77/287 (26%), Positives = 114/287 (39%), Gaps = 53/287 (18%)

Query: 8   TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPK 67
            GH   V DVA    G  LA+ SSD +I++  +       +  L+GH   V  VA+  P 
Sbjct: 48  KGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGEC--VRTLTGHTSYVSSVAF-SPD 104

Query: 68  FGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGN 127
            G IL+S S D T+ +W                H   VNS+ ++P   G  +A  S DG 
Sbjct: 105 -GRILSSSSRDKTIKVWDVETGK---CLTTLRGHTDWVNSVAFSPD--GTFVASSSQDGT 158

Query: 128 ISVFTARADGGWDTS-----RIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGG 182
           I +        WD            H   V SV+++P                +KL S  
Sbjct: 159 IKL--------WDLRTGKCVATLTGHTGEVNSVAFSPDG--------------EKLLSSS 196

Query: 183 CDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV 242
            D T+K+W L  G            H + V  VA++P+  L    +AS SEDG + +W  
Sbjct: 197 SDGTIKLWDLSTGKCLGTLRG----HENGVNSVAFSPDGYL----LASGSEDGTIRVW-- 246

Query: 243 AREGDQWEGKVLHDFK---TPVYRVSWSLTGNILAVADGNNNVTLWE 286
               D   G+ +         V  ++WS  G  LA    +  + +W+
Sbjct: 247 ----DLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  115 bits (290), Expect = 1e-30
 Identities = 77/283 (27%), Positives = 114/283 (40%), Gaps = 47/283 (16%)

Query: 8   TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPK 67
            GH   V  VA    GK LAT S D +IK+  +   T + L  L GH G V +VA +   
Sbjct: 6   KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDL--ETGELLRTLKGHTGPVRDVAASA-- 61

Query: 68  FGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGN 127
            G+ LAS S D T+ +W                H S V+S+ ++P   G  L+  S D  
Sbjct: 62  DGTYLASGSSDKTIRLWDLETGEC---VRTLTGHTSYVSSVAFSPD--GRILSSSSRDKT 116

Query: 128 ISVFTARADGGWDTSRID-----QAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGG 182
           I V        WD          + H   V SV+++P                  + S  
Sbjct: 117 IKV--------WDVETGKCLTTLRGHTDWVNSVAFSPDG--------------TFVASSS 154

Query: 183 CDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV 242
            D T+K+W L  G     C   L  HT  V  VA++P+       + S+S DG + +W +
Sbjct: 155 QDGTIKLWDLRTGK----CVATLTGHTGEVNSVAFSPD----GEKLLSSSSDGTIKLWDL 206

Query: 243 AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLW 285
           +          L   +  V  V++S  G +LA    +  + +W
Sbjct: 207 S---TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVW 246

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  102 bits (254), Expect = 1e-24
 Identities = 72/279 (25%), Positives = 115/279 (41%), Gaps = 30/279 (10%)

Query: 8   TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPK 67
            GHED++  +A    G+ L + SSD +IK+  + N      +    H  +V ++A + P 
Sbjct: 62  RGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPD 121

Query: 68  FGSILASCS-FDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDG 126
             SIL + S  DGTV +W    S         E H  SV S+ ++P    L  +  S DG
Sbjct: 122 GNSILLASSSLDGTVKLWDL--STPGKLIRTLEGHSESVTSLAFSPDGKLL-ASGSSLDG 178

Query: 127 NISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNT 186
            I ++  R             H   V+S++++P             D    + SG  D T
Sbjct: 179 TIKLWDLR---TGKPLSTLAGHTDPVSSLAFSP-------------DGGLLIASGSSDGT 222

Query: 187 VKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG 246
           +++W L  G            H+D V   +++P+     S +AS S DG + +W +    
Sbjct: 223 IRLWDLSTGKLLRSTLSG---HSDSV-VSSFSPD----GSLLASGSSDGTIRLWDLRSSS 274

Query: 247 DQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLW 285
                   H     V  V++S  G +LA    +  V LW
Sbjct: 275 SLLRTLSGHSS--SVLSVAFSPDGKLLASGSSDGTVRLW 311

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 99.0 bits (245), Expect = 2e-23
 Identities = 73/285 (25%), Positives = 127/285 (44%), Gaps = 34/285 (11%)

Query: 3   PQKIETGHEDTVHDVAMDYYGKRLATASS-DYSIKIIGVGNNTSQHLAKLSGHKGAVWEV 61
             +   GH ++V  +A    GK LA+ SS D +IK+  +   T + L+ L+GH   V  +
Sbjct: 147 LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL--RTGKPLSTLAGHTDPVSSL 204

Query: 62  AWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLAC 121
           A+  P  G ++AS S DGT+ +W   ++ + ++  +     S V+S        G  LA 
Sbjct: 205 AF-SPDGGLLIASGSSDGTIRLWDL-STGKLLRSTLSGHSDSVVSSFSP----DGSLLAS 258

Query: 122 GSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSG 181
           GSSDG I ++  R+       R    H   V SV+++P                + L SG
Sbjct: 259 GSSDGTIRLWDLRSSS--SLLRTLSGHSSSVLSVAFSPDG--------------KLLASG 302

Query: 182 GCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT 241
             D TV++W L  G         L+ H   V  ++++P+       ++  S+DG + +W 
Sbjct: 303 SSDGTVRLWDLETGKLLSSL--TLKGHEGPVSSLSFSPD---GSLLVSGGSDDGTIRLWD 357

Query: 242 VAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286
           +       +     +  + V  VS+S  G +++    +  V LW+
Sbjct: 358 L----RTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWD 398

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 80.1 bits (196), Expect = 5e-17
 Identities = 74/286 (25%), Positives = 121/286 (42%), Gaps = 35/286 (12%)

Query: 2   PPQKIETGHEDTVHDVAMDYYGKR-LATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWE 60
            P     GH D V  +A    G   +A+ SSD +I++  + +      + LSGH      
Sbjct: 189 KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL-STGKLLRSTLSGHSD--SV 245

Query: 61  VAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLA 120
           V+   P  GS+LAS S DGT+ +W   +S+  ++      H SSV S+ ++P   G  LA
Sbjct: 246 VSSFSPD-GSLLASGSSDGTIRLWDLRSSSSLLR--TLSGHSSSVLSVAFSPD--GKLLA 300

Query: 121 CGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCS 180
            GSSDG + ++     G   +S   + H   V+S+S++P             D    +  
Sbjct: 301 SGSSDGTVRLWDLE-TGKLLSSLTLKGHEGPVSSLSFSP-------------DGSLLVSG 346

Query: 181 GGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIW 240
           G  D T+++W L  G                V  V+++P+       ++S S DG V +W
Sbjct: 347 GSDDGTIRLWDLRTGKPLKTL-----EGHSNVLSVSFSPD----GRVVSSGSTDGTVRLW 397

Query: 241 TVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286
            ++                 V  + +S  G  LA    +N + LW+
Sbjct: 398 DLSTGSLLRNLDGHTS---RVTSLDFSPDGKSLASGSSDNTIRLWD 440

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 76.2 bits (188), Expect = 4e-16
 Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 40/196 (20%)

Query: 96  HVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTS-----RIDQAHPV 150
              + H   V  + ++P   G  LA GS DG I V        WD       R  + H  
Sbjct: 3   RTLKGHTGGVTCVAFSPD--GKLLATGSGDGTIKV--------WDLETGELLRTLKGHTG 52

Query: 151 GVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTD 210
            V  V+ +                   L SG  D T+++W L  G    +C   L  HT 
Sbjct: 53  PVRDVAASADG--------------TYLASGSSDKTIRLWDLETG----ECVRTLTGHTS 94

Query: 211 WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTG 270
           +V  VA++P+  +    ++S+S D  + +W V           L      V  V++S  G
Sbjct: 95  YVSSVAFSPDGRI----LSSSSRDKTIKVWDVETGKCL---TTLRGHTDWVNSVAFSPDG 147

Query: 271 NILAVADGNNNVTLWE 286
             +A +  +  + LW+
Sbjct: 148 TFVASSSQDGTIKLWD 163

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 65.9 bits (159), Expect = 4e-12
 Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 34/198 (17%)

Query: 8   TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPK 67
           +GH  +V  VA    GK LA+ SSD ++++  +          L GH+G V  +++  P 
Sbjct: 281 SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPD 339

Query: 68  FGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGN 127
              +++  S DGT+ +W               +  S+V S+ ++P   G  ++ GS+DG 
Sbjct: 340 GSLLVSGGSDDGTIRLWDLRTGKPLKTL----EGHSNVLSVSFSPD--GRVVSSGSTDGT 393

Query: 128 ISVFTARADGGWDTSRIDQ-----AHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGG 182
           + +        WD S          H   VTS+ ++P                + L SG 
Sbjct: 394 VRL--------WDLSTGSLLRNLDGHTSRVTSLDFSPDG--------------KSLASGS 431

Query: 183 CDNTVKVWKLYNGIWKMD 200
            DNT+++W L   +  + 
Sbjct: 432 SDNTIRLWDLKTSLKSVS 449

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 44 TSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK 85
          + + L  L GH G V  VA++    G  LAS S DGT+ +W 
Sbjct: 1  SGELLKTLKGHTGPVTSVAFSP--DGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 44.6 bits (105), Expect = 4e-05
 Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 6/68 (8%)

Query: 50  KLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKD-----HVFEDHKSS 104
           KL GH  ++ ++ + +P F  ILAS S D T+ +W+  +++E +K+      + + HK  
Sbjct: 69  KLKGHTSSILDLQF-NPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK 127

Query: 105 VNSIDWAP 112
           ++ IDW P
Sbjct: 128 ISIIDWNP 135

Length = 568

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.6 bits (93), Expect = 5e-05
 Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 46 QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK 85
          + L  L GH G V  VA+  P  G++LAS S DGTV +W 
Sbjct: 2  KLLRTLKGHTGPVTSVAF-SPD-GNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 43.7 bits (103), Expect = 6e-05
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 12/115 (10%)

Query: 2   PPQKIETGHEDTVHDVAMD-YYGKRLATASSD-----YSIKIIGVGNNTSQHLAKLSGHK 55
           PP  I  G E  + DVA + +  ++L TAS D     + I   G+  N S  +  L GH 
Sbjct: 68  PP--ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHT 125

Query: 56  GAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDW 110
             V  V++ HP   ++LAS   D  V +W   +        V + H   + S++W
Sbjct: 126 KKVGIVSF-HPSAMNVLASAGADMVVNVW---DVERGKAVEVIKCHSDQITSLEW 176

Length = 493

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 65/282 (23%), Positives = 116/282 (41%), Gaps = 49/282 (17%)

Query: 21  YYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAW--AHPKFGSILASCSFD 78
           Y   ++A+++ +  +++  V  +  Q + ++  H+  VW + +  A P   ++LAS S D
Sbjct: 543 YIKSQVASSNFEGVVQVWDVARS--QLVTEMKEHEKRVWSIDYSSADP---TLLASGSDD 597

Query: 79  GTVIIW--KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARAD 136
           G+V +W   +G S   IK       K+++  + + P E G  LA GS+D  +  +  R  
Sbjct: 598 GSVKLWSINQGVSIGTIKT------KANICCVQF-PSESGRSLAFGSADHKVYYYDLRNP 650

Query: 137 GGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGI 196
                + I   H   V+ V +  S+                L S   DNT+K+W L   I
Sbjct: 651 KLPLCTMI--GHSKTVSYVRFVDSST---------------LVSSSTDNTLKLWDLSMSI 693

Query: 197 WKMDCFP--ALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA----------R 244
             ++  P  +   HT+    V     L +    IA+ SE  +V ++  A          +
Sbjct: 694 SGINETPLHSFMGHTNVKNFVG----LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFK 749

Query: 245 EGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286
             D   G  + D    +  V W    + L  A+   N+ + E
Sbjct: 750 TIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791

Length = 793

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.9 bits (86), Expect = 4e-04
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 4/36 (11%)

Query: 205 LQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIW 240
           L+ HT  V  VA++P+     + +AS S+DG V +W
Sbjct: 7   LKGHTGPVTSVAFSPD----GNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.9 bits (86), Expect = 5e-04
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)

Query: 205 LQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIW 240
           L+ HT  V  VA++P+       +AS S+DG + +W
Sbjct: 8   LKGHTGPVTSVAFSPD----GKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 35.4 bits (82), Expect = 0.001
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 96  HVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVF 131
              + H   V S+ ++P   G  LA GS DG I ++
Sbjct: 6   KTLKGHTGPVTSVAFSPD--GKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 96  HVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVF 131
              + H   V S+ ++P   G  LA GS DG + V+
Sbjct: 5   RTLKGHTGPVTSVAFSPD--GNLLASGSDDGTVRVW 38

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	288
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	99.98
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.98
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.98
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.98
PTZ00421	493	coronin; Provisional	99.98
PTZ00420	568	coronin; Provisional	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.96
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG0296	399	consensus Angio-associated migratory cell protein	99.95
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.95
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.95
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0267	825	consensus Microtubule severing protein katanin p80	99.94
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.94
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.93
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.93
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.93
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.93
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.93
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.93
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.92
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.92
KOG0643	327	consensus Translation initiation factor 3, subunit	99.92
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.92
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.92
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.91
KOG2096	420	consensus WD40 repeat protein [General function pr	99.91
KOG0639	705	consensus Transducin-like enhancer of split protei	99.91
KOG0646	476	consensus WD40 repeat protein [General function pr	99.91
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.91
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.91
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.91
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.91
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.91
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.9
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.9
KOG0639	705	consensus Transducin-like enhancer of split protei	99.9
KOG0267	825	consensus Microtubule severing protein katanin p80	99.9
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.89
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.89
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.88
KOG4328	498	consensus WD40 protein [Function unknown]	99.88
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.88
KOG0646	476	consensus WD40 repeat protein [General function pr	99.88
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.88
KOG2096	420	consensus WD40 repeat protein [General function pr	99.87
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.87
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.87
KOG1539	910	consensus WD repeat protein [General function pred	99.87
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.87
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.86
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.86
KOG4328	498	consensus WD40 protein [Function unknown]	99.86
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.86
KOG1273	405	consensus WD40 repeat protein [General function pr	99.86
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.86
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.86
KOG2048	691	consensus WD40 repeat protein [General function pr	99.85
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.85
KOG2055	514	consensus WD40 repeat protein [General function pr	99.85
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.84
KOG1274	933	consensus WD40 repeat protein [General function pr	99.84
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.83
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.83
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.83
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.83
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.83
COG2319	466	FOG: WD40 repeat [General function prediction only	99.82
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.82
KOG4227	609	consensus WD40 repeat protein [General function pr	99.82
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.82
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.81
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.81
KOG2048	691	consensus WD40 repeat protein [General function pr	99.81
KOG1539	910	consensus WD repeat protein [General function pred	99.81
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.8
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.8
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.8
PRK11028	330	6-phosphogluconolactonase; Provisional	99.79
KOG1188	376	consensus WD40 repeat protein [General function pr	99.79
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.78
COG2319	466	FOG: WD40 repeat [General function prediction only	99.78
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.78
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.77
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.77
KOG1310	758	consensus WD40 repeat protein [General function pr	99.77
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.77
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.77
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.76
KOG1188	376	consensus WD40 repeat protein [General function pr	99.75
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.74
KOG1334	559	consensus WD40 repeat protein [General function pr	99.73
KOG1273	405	consensus WD40 repeat protein [General function pr	99.72
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.72
KOG0649	325	consensus WD40 repeat protein [General function pr	99.71
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.71
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.7
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.7
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.69
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.68
PRK01742	429	tolB translocation protein TolB; Provisional	99.68
KOG1963	792	consensus WD40 repeat protein [General function pr	99.68
KOG1310	758	consensus WD40 repeat protein [General function pr	99.68
PRK01742	429	tolB translocation protein TolB; Provisional	99.65
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.65
KOG2055	514	consensus WD40 repeat protein [General function pr	99.65
PRK11028	330	6-phosphogluconolactonase; Provisional	99.64
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.63
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.6
KOG1963	792	consensus WD40 repeat protein [General function pr	99.6
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.58
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.57
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.57
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.57
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.57
KOG0649	325	consensus WD40 repeat protein [General function pr	99.56
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.55
KOG4227	609	consensus WD40 repeat protein [General function pr	99.53
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.49
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.49
KOG1334	559	consensus WD40 repeat protein [General function pr	99.48
KOG2321	703	consensus WD40 repeat protein [General function pr	99.46
PRK05137	435	tolB translocation protein TolB; Provisional	99.46
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.44
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.42
PRK02889	427	tolB translocation protein TolB; Provisional	99.42
PRK03629	429	tolB translocation protein TolB; Provisional	99.42
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.41
PRK03629	429	tolB translocation protein TolB; Provisional	99.41
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.41
PRK04922	433	tolB translocation protein TolB; Provisional	99.4
KOG2139	445	consensus WD40 repeat protein [General function pr	99.39
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.38
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.37
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.36
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.36
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.35
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.35
PRK02889	427	tolB translocation protein TolB; Provisional	99.34
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.34
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.33
KOG2139	445	consensus WD40 repeat protein [General function pr	99.33
PRK04922	433	tolB translocation protein TolB; Provisional	99.32
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.31
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.29
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.28
PRK05137	435	tolB translocation protein TolB; Provisional	99.28
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.27
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.27
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.27
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.24
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.22
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.18
PRK01029	428	tolB translocation protein TolB; Provisional	99.13
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.13
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.12
PRK01029	428	tolB translocation protein TolB; Provisional	99.09
KOG4547	541	consensus WD40 repeat-containing protein [General	99.08
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.07
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.07
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.07
KOG2321	703	consensus WD40 repeat protein [General function pr	99.06
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.06
PRK00178	430	tolB translocation protein TolB; Provisional	99.05
PRK04792	448	tolB translocation protein TolB; Provisional	99.05
PRK00178	430	tolB translocation protein TolB; Provisional	99.04
KOG4547	541	consensus WD40 repeat-containing protein [General	99.04
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.03
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.03
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.02
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.01
PRK04792	448	tolB translocation protein TolB; Provisional	98.99
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.96
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.94
KOG2314	698	consensus Translation initiation factor 3, subunit	98.9
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.89
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.86
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.84
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.8
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.78
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.77
KOG2315	566	consensus Predicted translation initiation factor	98.77
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.75
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.74
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.73
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.72
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.72
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.66
KOG2315	566	consensus Predicted translation initiation factor	98.65
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.62
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.61
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.6
COG4946	668	Uncharacterized protein related to the periplasmic	98.59
KOG2695	425	consensus WD40 repeat protein [General function pr	98.57
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.55
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.54
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.52
KOG2314	698	consensus Translation initiation factor 3, subunit	98.5
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.48
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.44
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.43
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.36
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.32
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.31
PRK04043	419	tolB translocation protein TolB; Provisional	98.28
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.28
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.26
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.21
COG4946	668	Uncharacterized protein related to the periplasmic	98.17
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.16
KOG2695	425	consensus WD40 repeat protein [General function pr	98.13
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.12
PRK04043	419	tolB translocation protein TolB; Provisional	98.11
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.08
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.07
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.06
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.04
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.96
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.92
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.91
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.81
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.8
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.76
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.63
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.61
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.53
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.48
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.48
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.47
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.42
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.39
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.35
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.34
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.28
KOG3621	726	consensus WD40 repeat-containing protein [General	97.16
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.97
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.94
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	96.93
KOG3621	726	consensus WD40 repeat-containing protein [General	96.89
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	96.78
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.78
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.77
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.72
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.65
PHA02713	557	hypothetical protein; Provisional	96.65
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.5
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.5
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.48
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.4
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.37
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.2
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	95.91
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	95.9
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.8
PHA02713	557	hypothetical protein; Provisional	95.51
KOG2395	644	consensus Protein involved in vacuole import and d	95.46
PRK13616	591	lipoprotein LpqB; Provisional	95.28
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	95.14
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.07
KOG2444	238	consensus WD40 repeat protein [General function pr	95.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.0
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	94.61
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.49
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	94.26
PRK02888	635	nitrous-oxide reductase; Validated	94.22
PRK13616	591	lipoprotein LpqB; Provisional	94.18
PHA02790	480	Kelch-like protein; Provisional	93.76
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	93.68
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	93.6
KOG2395	644	consensus Protein involved in vacuole import and d	93.53
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.34
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	93.33
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	93.32
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.32
COG3391	381	Uncharacterized conserved protein [Function unknow	93.27
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.12
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.02
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	92.95
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	92.91
PHA03098	534	kelch-like protein; Provisional	92.88
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.87
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	92.84
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.75
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	92.74
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.5
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	92.02
KOG2377	657	consensus Uncharacterized conserved protein [Funct	91.72
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	91.22
KOG2444	238	consensus WD40 repeat protein [General function pr	91.16
PRK02888	635	nitrous-oxide reductase; Validated	91.05
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	90.95
PHA02790	480	Kelch-like protein; Provisional	90.38
PHA03098	534	kelch-like protein; Provisional	89.98
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	89.94
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	89.82
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	89.66
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	88.1
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	88.07
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	87.25
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	86.94
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	86.39
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	84.86
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	84.64
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	84.59
KOG2377	657	consensus Uncharacterized conserved protein [Funct	84.52
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	83.64
COG5167	776	VID27 Protein involved in vacuole import and degra	83.14
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	82.94
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	82.14
PRK13684	334	Ycf48-like protein; Provisional	81.85
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	81.61
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	80.89
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	80.72
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	80.53

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.7e-50  Score=312.82  Aligned_cols=284  Identities=60%  Similarity=1.069  Sum_probs=256.2

Q ss_pred             CCCCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCc-eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCC
Q 036510            1 MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTS-QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDG   79 (288)
Q Consensus         1 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~   79 (288)
                      |+.+++.+.|++.|..+.++-.|++||++|.|++|+|+.+..... .++..|.||.++|+.++|.||..|.+|+|||.||
T Consensus         1 ~~~q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDg   80 (299)
T KOG1332|consen    1 TVMQTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDG   80 (299)
T ss_pred             CcceehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCc
Confidence            788999999999999999998999999999999999999865443 6789999999999999999998999999999999


Q ss_pred             cEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCC
Q 036510           80 TVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAP  159 (288)
Q Consensus        80 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p  159 (288)
                      .|.||.-.++ .|.+......|...|++++|-|++.+..|++++.||+|.+.+.+..+.+...++..+|+.+|.+++|.|
T Consensus        81 kVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswap  159 (299)
T KOG1332|consen   81 KVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAP  159 (299)
T ss_pred             eEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecC
Confidence            9999987765 566666677899999999999999999999999999999999988766776677889999999999999


Q ss_pred             CCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEE
Q 036510          160 STAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVII  239 (288)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~i  239 (288)
                      ...++.++..+.....+.|+||+.|+.|+||+...+.+..+  +.|.+|.++|++|+|.|..+++..+|||+|.|+++.|
T Consensus       160 a~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e--~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viI  237 (299)
T KOG1332|consen  160 ASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLE--RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVII  237 (299)
T ss_pred             cCCCccccccCcccccceeeccCCccceeeeecCCcchhhh--hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEE
Confidence            98878777777777778899999999999999988766544  3589999999999999988777899999999999999


Q ss_pred             EEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          240 WTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       240 w~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      |......++++.+++++|..+++++.||+.|+.|++++.|+.|++|++
T Consensus       238 wt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  238 WTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE  285 (299)
T ss_pred             EEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence            998866677888889999999999999999999999999999999985

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.3e-46  Score=305.72  Aligned_cols=252  Identities=27%  Similarity=0.471  Sum_probs=215.7

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      .+.||..+|-+++|+|+|++|+||+.|.++|+||...+  .+.++..+|..=|.+++|+|+  |..||||+.||+|++||
T Consensus       110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te--Tp~~t~KgH~~WVlcvawsPD--gk~iASG~~dg~I~lwd  185 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE--TPLFTCKGHKNWVLCVAWSPD--GKKIASGSKDGSIRLWD  185 (480)
T ss_pred             ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC--CcceeecCCccEEEEEEECCC--cchhhccccCCeEEEec
Confidence            35699999999999999999999999999999999654  558899999999999999975  99999999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCC---CCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCC
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHE---LGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTA  162 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~---~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~  162 (288)
                      ..++.+.  ...+.+|++.|++++|.|-.   ..++||+++.||.++|||+..+.   ....+.+|+.+|+|+.|--+  
T Consensus       186 pktg~~~--g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~---~~~~lsgHT~~VTCvrwGG~--  258 (480)
T KOG0271|consen  186 PKTGQQI--GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT---CVRTLSGHTASVTCVRWGGE--  258 (480)
T ss_pred             CCCCCcc--cccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce---EEEEeccCccceEEEEEcCC--
Confidence            9887653  45788999999999998742   35689999999999999997543   24567899999999999644  


Q ss_pred             CCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCC-----------CC--------
Q 036510          163 PGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNL-----------GL--------  223 (288)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~-----------~~--------  223 (288)
                                   .+++|||.|++||+|+...|    ++...++||..+|+.++.+-+-           ..        
T Consensus       259 -------------gliySgS~DrtIkvw~a~dG----~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~  321 (480)
T KOG0271|consen  259 -------------GLIYSGSQDRTIKVWRALDG----KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQ  321 (480)
T ss_pred             -------------ceEEecCCCceEEEEEccch----hHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHH
Confidence                         57999999999999998877    5778899999999999988321           00        


Q ss_pred             -------------CCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          224 -------------PKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       224 -------------~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                                   .+..+||||+|+++.+|+.....++  .+.+.+|..-|+.+.||||++++|+||-|++|+||+.
T Consensus       322 ~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkp--i~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g  396 (480)
T KOG0271|consen  322 KKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKP--ITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDG  396 (480)
T ss_pred             HHHHHHHHHhhccCcceeEEecCCceEEEecccccccc--hhhhhchhhheeeEEECCCccEEEEeecccceeeeeC
Confidence                         1235999999999999998765433  3456788899999999999999999999999999983

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6e-45  Score=302.68  Aligned_cols=245  Identities=27%  Similarity=0.369  Sum_probs=216.8

Q ss_pred             cccccccceEEEEEcCC--CCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510            6 IETGHEDTVHDVAMDYY--GKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVII   83 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~--g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i   83 (288)
                      .+.||...|.++.|.|.  +..|+||+.||++++|+++..  ..+..+.+|...|-.++|.|  +|++|+|+|.|.+.++
T Consensus       212 ~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e--~~l~~l~gH~~RVs~VafHP--sG~~L~TasfD~tWRl  287 (459)
T KOG0272|consen  212 TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE--TPLQDLEGHLARVSRVAFHP--SGKFLGTASFDSTWRL  287 (459)
T ss_pred             EEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC--cchhhhhcchhhheeeeecC--CCceeeecccccchhh
Confidence            46799999999999996  568999999999999999754  56899999999999999965  4999999999999999


Q ss_pred             eecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCC
Q 036510           84 WKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAP  163 (288)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~  163 (288)
                      ||+.++.+   .....+|...|.+++|+||  |.++++|+.|..-+|||+|++.+.   ..+.+|..+|.+++|+|++  
T Consensus       288 WD~~tk~E---lL~QEGHs~~v~~iaf~~D--GSL~~tGGlD~~~RvWDlRtgr~i---m~L~gH~k~I~~V~fsPNG--  357 (459)
T KOG0272|consen  288 WDLETKSE---LLLQEGHSKGVFSIAFQPD--GSLAATGGLDSLGRVWDLRTGRCI---MFLAGHIKEILSVAFSPNG--  357 (459)
T ss_pred             cccccchh---hHhhcccccccceeEecCC--CceeeccCccchhheeecccCcEE---EEecccccceeeEeECCCc--
Confidence            99987653   2345789999999999999  678999999999999999998764   3557899999999999998  


Q ss_pred             CceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEee
Q 036510          164 GALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA  243 (288)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~  243 (288)
                                  ..|+|||.|++++|||++..    ..++.+-+|.+-|..|+|+|..   +++|||+|.|++++||...
T Consensus       358 ------------y~lATgs~Dnt~kVWDLR~r----~~ly~ipAH~nlVS~Vk~~p~~---g~fL~TasyD~t~kiWs~~  418 (459)
T KOG0272|consen  358 ------------YHLATGSSDNTCKVWDLRMR----SELYTIPAHSNLVSQVKYSPQE---GYFLVTASYDNTVKIWSTR  418 (459)
T ss_pred             ------------eEEeecCCCCcEEEeeeccc----ccceecccccchhhheEecccC---CeEEEEcccCcceeeecCC
Confidence                        78999999999999999865    4577888999999999999964   6899999999999999865


Q ss_pred             cCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          244 REGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       244 ~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      .-   ...+.+.+|.+.|.+++++||++.|++++.|++++||.
T Consensus       419 ~~---~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  419 TW---SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             Cc---ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            42   12355689999999999999999999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.5e-43  Score=287.95  Aligned_cols=252  Identities=27%  Similarity=0.388  Sum_probs=203.9

Q ss_pred             CCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCC---CCCCEEEEeeCCC
Q 036510            3 PQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHP---KFGSILASCSFDG   79 (288)
Q Consensus         3 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~~l~s~s~d~   79 (288)
                      |-..+.||...|.+|+|+|||+.||||+.||+|++||-..+ .+....|.+|+.-|++++|-|-   +...+|+|+|.||
T Consensus       149 p~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg-~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg  227 (480)
T KOG0271|consen  149 PLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTG-QQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDG  227 (480)
T ss_pred             cceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCC-CcccccccCcccceeEEeecccccCCCccceecccCCC
Confidence            44567799999999999999999999999999999996432 2446778999999999999652   3567999999999


Q ss_pred             cEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeE-----------------
Q 036510           80 TVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTS-----------------  142 (288)
Q Consensus        80 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~-----------------  142 (288)
                      +|+|||...+.   ....+.+|..+|+|++|-.+   .++++|+.|++|++|+...+..+..+                 
T Consensus       228 ~vrIWd~~~~~---~~~~lsgHT~~VTCvrwGG~---gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~  301 (480)
T KOG0271|consen  228 SVRIWDTKLGT---CVRTLSGHTASVTCVRWGGE---GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYV  301 (480)
T ss_pred             CEEEEEccCce---EEEEeccCccceEEEEEcCC---ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhh
Confidence            99999986654   45668899999999999865   36899999999999987643211000                 


Q ss_pred             -----------------------------------------------------------EeeccCCCCeeEEEeCCCCCC
Q 036510          143 -----------------------------------------------------------RIDQAHPVGVTSVSWAPSTAP  163 (288)
Q Consensus       143 -----------------------------------------------------------~~~~~~~~~v~~i~~~p~~~~  163 (288)
                                                                                 ..+.+|...|..+.|||+   
T Consensus       302 LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd---  378 (480)
T KOG0271|consen  302 LRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPD---  378 (480)
T ss_pred             hhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCC---
Confidence                                                                       012233444444444444   


Q ss_pred             CceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEee
Q 036510          164 GALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA  243 (288)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~  243 (288)
                                 +++++|+|.|++||+||.++|    +.+.+++||-..|.-|+|+.|.    .+|||||.|.++++|+++
T Consensus       379 -----------~r~IASaSFDkSVkLW~g~tG----k~lasfRGHv~~VYqvawsaDs----RLlVS~SkDsTLKvw~V~  439 (480)
T KOG0271|consen  379 -----------GRYIASASFDKSVKLWDGRTG----KFLASFRGHVAAVYQVAWSADS----RLLVSGSKDSTLKVWDVR  439 (480)
T ss_pred             -----------ccEEEEeecccceeeeeCCCc----chhhhhhhccceeEEEEeccCc----cEEEEcCCCceEEEEEee
Confidence                       489999999999999999998    4677899999999999999985    689999999999999998


Q ss_pred             cCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          244 REGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       244 ~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      .++.   ..-+-+|...|+.+.|+|||+++++|+.|+-++||.
T Consensus       440 tkKl---~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  440 TKKL---KQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             eeee---cccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            6531   122345778899999999999999999999999996

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.3e-43  Score=291.64  Aligned_cols=243  Identities=26%  Similarity=0.399  Sum_probs=215.1

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCC
Q 036510            9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN   88 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~   88 (288)
                      |-+.+|..+.|+++++.||+||.+|.+++|..+.  ...++++.||+..|.++.|.|..++..++||+.||++++|++.+
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~--~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~  250 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ--CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ  250 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCC--cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence            6678999999999999999999999999999853  36789999999999999997643477999999999999999876


Q ss_pred             CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceec
Q 036510           89 SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG  168 (288)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~  168 (288)
                      ..   ....+.+|...|..++|||+  |++|++++.|.+-++||+++...   ....++|..+|.+|+|.|++       
T Consensus       251 e~---~l~~l~gH~~RVs~VafHPs--G~~L~TasfD~tWRlWD~~tk~E---lL~QEGHs~~v~~iaf~~DG-------  315 (459)
T KOG0272|consen  251 ET---PLQDLEGHLARVSRVAFHPS--GKFLGTASFDSTWRLWDLETKSE---LLLQEGHSKGVFSIAFQPDG-------  315 (459)
T ss_pred             Cc---chhhhhcchhhheeeeecCC--Cceeeecccccchhhcccccchh---hHhhcccccccceeEecCCC-------
Confidence            44   45568899999999999998  88999999999999999987643   23457999999999999998       


Q ss_pred             ccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCc
Q 036510          169 SGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ  248 (288)
Q Consensus       169 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~  248 (288)
                             .+++|||-|..-+|||++++    +++..+.+|...|.+|.|+|++    ..|||||.|++++|||++...  
T Consensus       316 -------SL~~tGGlD~~~RvWDlRtg----r~im~L~gH~k~I~~V~fsPNG----y~lATgs~Dnt~kVWDLR~r~--  378 (459)
T KOG0272|consen  316 -------SLAATGGLDSLGRVWDLRTG----RCIMFLAGHIKEILSVAFSPNG----YHLATGSSDNTCKVWDLRMRS--  378 (459)
T ss_pred             -------ceeeccCccchhheeecccC----cEEEEecccccceeeEeECCCc----eEEeecCCCCcEEEeeecccc--
Confidence                   78999999999999999998    6788999999999999999984    789999999999999998642  


Q ss_pred             ccceEeeccccCeEEEEeec-CCCEEEEEeCCCcEEEeE
Q 036510          249 WEGKVLHDFKTPVYRVSWSL-TGNILAVADGNNNVTLWE  286 (288)
Q Consensus       249 ~~~~~~~~~~~~i~~~~~sp-dg~~l~s~~~d~~v~~w~  286 (288)
                       +..++-.|.+-|+.|+|+| -|.+|++++.|++++||.
T Consensus       379 -~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs  416 (459)
T KOG0272|consen  379 -ELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWS  416 (459)
T ss_pred             -cceecccccchhhheEecccCCeEEEEcccCcceeeec
Confidence             3455667788999999999 689999999999999996

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.6e-39  Score=254.63  Aligned_cols=251  Identities=22%  Similarity=0.328  Sum_probs=204.1

Q ss_pred             CCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEE
Q 036510            3 PQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVI   82 (288)
Q Consensus         3 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~   82 (288)
                      |++.+.||+-.|..+.+++||++.+|+|.|+++|+||+..+  +..+++.||...|.+++|+++  ...++|||.|++++
T Consensus        55 ~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g--~~t~~f~GH~~dVlsva~s~d--n~qivSGSrDkTik  130 (315)
T KOG0279|consen   55 PVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG--ESTRRFVGHTKDVLSVAFSTD--NRQIVSGSRDKTIK  130 (315)
T ss_pred             eeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC--cEEEEEEecCCceEEEEecCC--CceeecCCCcceee
Confidence            45678899999999999999999999999999999999654  678889999999999999865  78999999999999


Q ss_pred             EeecCCCCceEEeEEeec--CCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCC
Q 036510           83 IWKEGNSNEWIKDHVFED--HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPS  160 (288)
Q Consensus        83 iwd~~~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~  160 (288)
                      +|+....    +..++..  |++.|.|+.|+|.+..-+++++++|+++++||+++-   +......+|+.-++.+.+||+
T Consensus       131 lwnt~g~----ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~---~l~~~~~gh~~~v~t~~vSpD  203 (315)
T KOG0279|consen  131 LWNTLGV----CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC---QLRTTFIGHSGYVNTVTVSPD  203 (315)
T ss_pred             eeeeccc----EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc---chhhccccccccEEEEEECCC
Confidence            9997543    2223332  378999999999976778999999999999999863   334455689999999999999


Q ss_pred             CCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEE
Q 036510          161 TAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIW  240 (288)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw  240 (288)
                      +              .++++|+.|+.+-+||++++.    .+++ .+|...|++++|+|+     .+.+.+.-+..|+||
T Consensus       204 G--------------slcasGgkdg~~~LwdL~~~k----~lys-l~a~~~v~sl~fspn-----rywL~~at~~sIkIw  259 (315)
T KOG0279|consen  204 G--------------SLCASGGKDGEAMLWDLNEGK----NLYS-LEAFDIVNSLCFSPN-----RYWLCAATATSIKIW  259 (315)
T ss_pred             C--------------CEEecCCCCceEEEEEccCCc----eeEe-ccCCCeEeeEEecCC-----ceeEeeccCCceEEE
Confidence            8              789999999999999999873    3444 457788999999997     467777777789999


Q ss_pred             EeecCCCcccceE-eecc-----ccCeEEEEeecCCCEEEEEeCCCcEEEeEcC
Q 036510          241 TVAREGDQWEGKV-LHDF-----KTPVYRVSWSLTGNILAVADGNNNVTLWEEA  288 (288)
Q Consensus       241 ~~~~~~~~~~~~~-~~~~-----~~~i~~~~~spdg~~l~s~~~d~~v~~w~~~  288 (288)
                      |+.......+.++ ..+.     .-...+++||+||+.|.+|-.|+.|++|.++
T Consensus       260 dl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  260 DLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             eccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            9976431111111 1111     1125789999999999999999999999864

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=5.7e-40  Score=291.42  Aligned_cols=244  Identities=26%  Similarity=0.434  Sum_probs=211.9

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCC-----------------------------ceeeEEEeccccCeE
Q 036510            9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNT-----------------------------SQHLAKLSGHKGAVW   59 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~-----------------------------~~~~~~~~~h~~~v~   59 (288)
                      .....+.|+.|++|++.||.|-.|..|++|.+....                             .....++.||.++|+
T Consensus       376 nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVy  455 (707)
T KOG0263|consen  376 NTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVY  455 (707)
T ss_pred             EcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCcee
Confidence            456788999999999999999999999999876210                             022456889999999


Q ss_pred             EEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCe
Q 036510           60 EVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGW  139 (288)
Q Consensus        60 ~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~  139 (288)
                      .+.|+|+  .++|+|||.|+++|+|.+.+..   ....+++|..||+.+.|+|.  |.++|+++.|++-++|.....   
T Consensus       456 g~sFsPd--~rfLlScSED~svRLWsl~t~s---~~V~y~GH~~PVwdV~F~P~--GyYFatas~D~tArLWs~d~~---  525 (707)
T KOG0263|consen  456 GCSFSPD--RRFLLSCSEDSSVRLWSLDTWS---CLVIYKGHLAPVWDVQFAPR--GYYFATASHDQTARLWSTDHN---  525 (707)
T ss_pred             eeeeccc--ccceeeccCCcceeeeecccce---eEEEecCCCcceeeEEecCC--ceEEEecCCCceeeeeecccC---
Confidence            9999975  7899999999999999987644   45567899999999999997  899999999999999987653   


Q ss_pred             eeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecC
Q 036510          140 DTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAP  219 (288)
Q Consensus       140 ~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp  219 (288)
                      .+.++..+|...|.|+.|.|+.              .++++||.|++|++||+.+|.    ++..+.||..+|.+++|||
T Consensus       526 ~PlRifaghlsDV~cv~FHPNs--------------~Y~aTGSsD~tVRlWDv~~G~----~VRiF~GH~~~V~al~~Sp  587 (707)
T KOG0263|consen  526 KPLRIFAGHLSDVDCVSFHPNS--------------NYVATGSSDRTVRLWDVSTGN----SVRIFTGHKGPVTALAFSP  587 (707)
T ss_pred             CchhhhcccccccceEEECCcc--------------cccccCCCCceEEEEEcCCCc----EEEEecCCCCceEEEEEcC
Confidence            4567778999999999999998              789999999999999999983    5677899999999999999


Q ss_pred             CCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          220 NLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       220 ~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      .    +.+||+|+.|+.|++||+....   ....+.+|.+.|+++.||.||..||+|+.|++|+|||+
T Consensus       588 ~----Gr~LaSg~ed~~I~iWDl~~~~---~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~  648 (707)
T KOG0263|consen  588 C----GRYLASGDEDGLIKIWDLANGS---LVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDL  648 (707)
T ss_pred             C----CceEeecccCCcEEEEEcCCCc---chhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence            7    4789999999999999997532   12344677889999999999999999999999999995

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3e-37  Score=243.95  Aligned_cols=248  Identities=31%  Similarity=0.531  Sum_probs=213.6

Q ss_pred             cccccccceEEEEEcCC-CCEEEEeeCCCcEEEEEeCC-CCceeeEEE-eccccCeEEEEecCCCCCCEEEEeeCCCcEE
Q 036510            6 IETGHEDTVHDVAMDYY-GKRLATASSDYSIKIIGVGN-NTSQHLAKL-SGHKGAVWEVAWAHPKFGSILASCSFDGTVI   82 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~-g~~l~s~~~d~~i~lwd~~~-~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~   82 (288)
                      .+.+|.+.+..++|+|. |..|||+|.|+.||+|+... .+..+...+ .+|+..|..++|+|.  |++|+++|.|.++.
T Consensus         9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~--g~~La~aSFD~t~~   86 (312)
T KOG0645|consen    9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPH--GRYLASASFDATVV   86 (312)
T ss_pred             eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCC--CcEEEEeeccceEE
Confidence            46799999999999998 89999999999999999863 334444444 479999999999875  89999999999999


Q ss_pred             EeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCC
Q 036510           83 IWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTA  162 (288)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~  162 (288)
                      ||.-. ..++....++.+|.+.|.|++|+++  +.+||+++.|+.+.||.+..+..+....+++.|+..|..+.|.|.. 
T Consensus        87 Iw~k~-~~efecv~~lEGHEnEVK~Vaws~s--G~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~-  162 (312)
T KOG0645|consen   87 IWKKE-DGEFECVATLEGHENEVKCVAWSAS--GNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE-  162 (312)
T ss_pred             EeecC-CCceeEEeeeeccccceeEEEEcCC--CCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc-
Confidence            99754 4567788899999999999999998  7899999999999999998877777777889999999999999986 


Q ss_pred             CCceecccccCCCceeEEeecCCcEEEEEEe-CCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEE
Q 036510          163 PGALVGSGFLDPVQKLCSGGCDNTVKVWKLY-NGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT  241 (288)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~  241 (288)
                                   .+|+|+|.|++||+|+-. ...+  ++.+++.+|...|.+++|+|.+    ..++++++|++++||.
T Consensus       163 -------------dlL~S~SYDnTIk~~~~~~dddW--~c~~tl~g~~~TVW~~~F~~~G----~rl~s~sdD~tv~Iw~  223 (312)
T KOG0645|consen  163 -------------DLLFSCSYDNTIKVYRDEDDDDW--ECVQTLDGHENTVWSLAFDNIG----SRLVSCSDDGTVSIWR  223 (312)
T ss_pred             -------------ceeEEeccCCeEEEEeecCCCCe--eEEEEecCccceEEEEEecCCC----ceEEEecCCcceEeee
Confidence                         789999999999999987 4433  5778999999999999999974    6899999999999997


Q ss_pred             eecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          242 VAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ...       .....++.+++.+.|.  ...|+++++|+.|+|++.
T Consensus       224 ~~~-------~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~  260 (312)
T KOG0645|consen  224 LYT-------DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKE  260 (312)
T ss_pred             ecc-------CcchhcccceEeeeec--ccceEeccCCCEEEEEEe
Confidence            542       1223456789999998  667899999999999974

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-37  Score=245.19  Aligned_cols=250  Identities=24%  Similarity=0.377  Sum_probs=208.2

Q ss_pred             CccccccccceEEEEEcCCC-CEEEEeeCCCcEEEEEeCCCC---ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCC
Q 036510            4 QKIETGHEDTVHDVAMDYYG-KRLATASSDYSIKIIGVGNNT---SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDG   79 (288)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~lwd~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~   79 (288)
                      ..++.+|.+.|.+++..+.+ ..|++++.|+++.+|++....   +..++.+.||...|..+.-+++  |++.+|+|.|+
T Consensus         8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~d--g~~alS~swD~   85 (315)
T KOG0279|consen    8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSD--GNFALSASWDG   85 (315)
T ss_pred             eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccC--CceEEeccccc
Confidence            34677999999999998864 789999999999999986432   4558899999999999998864  99999999999


Q ss_pred             cEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEee-ccCCCCeeEEEeC
Q 036510           80 TVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRID-QAHPVGVTSVSWA  158 (288)
Q Consensus        80 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~v~~i~~~  158 (288)
                      ++++||+..+.   ..+.+.+|...|.+++|+|+  ..++++|+.|++|.+|++....   ..... ..+..-|.++.|+
T Consensus        86 ~lrlWDl~~g~---~t~~f~GH~~dVlsva~s~d--n~qivSGSrDkTiklwnt~g~c---k~t~~~~~~~~WVscvrfs  157 (315)
T KOG0279|consen   86 TLRLWDLATGE---STRRFVGHTKDVLSVAFSTD--NRQIVSGSRDKTIKLWNTLGVC---KYTIHEDSHREWVSCVRFS  157 (315)
T ss_pred             eEEEEEecCCc---EEEEEEecCCceEEEEecCC--CceeecCCCcceeeeeeecccE---EEEEecCCCcCcEEEEEEc
Confidence            99999998775   45668899999999999998  5679999999999999986432   22332 2347789999999


Q ss_pred             CCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEE
Q 036510          159 PSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVI  238 (288)
Q Consensus       159 p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~  238 (288)
                      |+...            -+++++|+|+++|+||+++-    +....+.||..+|+.+.+|||+    ++.++|+.|+.+.
T Consensus       158 P~~~~------------p~Ivs~s~DktvKvWnl~~~----~l~~~~~gh~~~v~t~~vSpDG----slcasGgkdg~~~  217 (315)
T KOG0279|consen  158 PNESN------------PIIVSASWDKTVKVWNLRNC----QLRTTFIGHSGYVNTVTVSPDG----SLCASGGKDGEAM  217 (315)
T ss_pred             CCCCC------------cEEEEccCCceEEEEccCCc----chhhccccccccEEEEEECCCC----CEEecCCCCceEE
Confidence            98521            46999999999999999874    4566788999999999999984    7899999999999


Q ss_pred             EEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEcC
Q 036510          239 IWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA  288 (288)
Q Consensus       239 iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~~  288 (288)
                      +||++..+.    ....++...|.+++|+|+-..|+.+.+ ..|+|||.+
T Consensus       218 LwdL~~~k~----lysl~a~~~v~sl~fspnrywL~~at~-~sIkIwdl~  262 (315)
T KOG0279|consen  218 LWDLNEGKN----LYSLEAFDIVNSLCFSPNRYWLCAATA-TSIKIWDLE  262 (315)
T ss_pred             EEEccCCce----eEeccCCCeEeeEEecCCceeEeeccC-CceEEEecc
Confidence            999986532    233466678999999999999887754 569999953

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=6.5e-37  Score=239.50  Aligned_cols=248  Identities=22%  Similarity=0.354  Sum_probs=204.1

Q ss_pred             cccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC
Q 036510           10 HEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS   89 (288)
Q Consensus        10 h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~   89 (288)
                      .+..|+.+.+.|+++.||++++. .||+||+......++.++.+|+..|..+.|-.  +|+...|||+||++||||++..
T Consensus        39 ~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~--dgrWMyTgseDgt~kIWdlR~~  115 (311)
T KOG0315|consen   39 PDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC--DGRWMYTGSEDGTVKIWDLRSL  115 (311)
T ss_pred             CccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEee--cCeEEEecCCCceEEEEeccCc
Confidence            36789999999999999988876 79999997655557999999999999999954  5999999999999999999874


Q ss_pred             CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecc
Q 036510           90 NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS  169 (288)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~  169 (288)
                      .   ..+.+ .|..+|+++..||+.  .-|++|.++|.|++||+++......+.  ..-...|.++.-.|++        
T Consensus       116 ~---~qR~~-~~~spVn~vvlhpnQ--teLis~dqsg~irvWDl~~~~c~~~li--Pe~~~~i~sl~v~~dg--------  179 (311)
T KOG0315|consen  116 S---CQRNY-QHNSPVNTVVLHPNQ--TELISGDQSGNIRVWDLGENSCTHELI--PEDDTSIQSLTVMPDG--------  179 (311)
T ss_pred             c---cchhc-cCCCCcceEEecCCc--ceEEeecCCCcEEEEEccCCccccccC--CCCCcceeeEEEcCCC--------
Confidence            4   23333 577999999999984  458899999999999998764322221  1223568888888887        


Q ss_pred             cccCCCceeEEeecCCcEEEEEEeCCce--eeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCC
Q 036510          170 GFLDPVQKLCSGGCDNTVKVWKLYNGIW--KMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGD  247 (288)
Q Consensus       170 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~  247 (288)
                            ++|+.+...|++.+|++...+.  .++.+..++.|...+....|||+.    ++||++|.|++++||+.+..  
T Consensus       180 ------sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~----k~lat~ssdktv~iwn~~~~--  247 (311)
T KOG0315|consen  180 ------SMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDV----KYLATCSSDKTVKIWNTDDF--  247 (311)
T ss_pred             ------cEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCC----cEEEeecCCceEEEEecCCc--
Confidence                  7888888899999999976533  345566788999999999999984    78999999999999998753  


Q ss_pred             cccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEcC
Q 036510          248 QWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA  288 (288)
Q Consensus       248 ~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~~  288 (288)
                      ......+.+++.++..++||.||++|++|+.|+.+|+|+++
T Consensus       248 ~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~  288 (311)
T KOG0315|consen  248 FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS  288 (311)
T ss_pred             eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccc
Confidence            12234567888999999999999999999999999999964

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.9e-36  Score=238.40  Aligned_cols=249  Identities=29%  Similarity=0.459  Sum_probs=212.8

Q ss_pred             cccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecC
Q 036510            8 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEG   87 (288)
Q Consensus         8 ~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~   87 (288)
                      .+|+..|.+++|+|.|++|++||.|.++-||.-.....+++.+|.||...|.+++|+.+  |.+||+||.|++|=||.+.
T Consensus        58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~s--G~~LATCSRDKSVWiWe~d  135 (312)
T KOG0645|consen   58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSAS--GNYLATCSRDKSVWIWEID  135 (312)
T ss_pred             ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCC--CCEEEEeeCCCeEEEEEec
Confidence            47999999999999999999999999999997655678899999999999999999965  9999999999999999998


Q ss_pred             CCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCcee
Q 036510           88 NSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV  167 (288)
Q Consensus        88 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~  167 (288)
                      ...++.....+.+|...|..+.|||.  ..+|++++.|++|++|.-..+..|.....+.+|...|.+++|+|.+      
T Consensus       136 eddEfec~aVL~~HtqDVK~V~WHPt--~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G------  207 (312)
T KOG0645|consen  136 EDDEFECIAVLQEHTQDVKHVIWHPT--EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG------  207 (312)
T ss_pred             CCCcEEEEeeeccccccccEEEEcCC--cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC------
Confidence            77788888889999999999999997  4689999999999999876566788888889999999999999987      


Q ss_pred             cccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCC-
Q 036510          168 GSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG-  246 (288)
Q Consensus       168 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~-  246 (288)
                              ..|++++.|++++||......        -..|+..+..|.|. +     ..|+|++.|+.|++|...... 
T Consensus       208 --------~rl~s~sdD~tv~Iw~~~~~~--------~~~~sr~~Y~v~W~-~-----~~IaS~ggD~~i~lf~~s~~~d  265 (312)
T KOG0645|consen  208 --------SRLVSCSDDGTVSIWRLYTDL--------SGMHSRALYDVPWD-N-----GVIASGGGDDAIRLFKESDSPD  265 (312)
T ss_pred             --------ceEEEecCCcceEeeeeccCc--------chhcccceEeeeec-c-----cceEeccCCCEEEEEEecCCCC
Confidence                    789999999999999876431        14577789999998 4     369999999999999876431 


Q ss_pred             Ccccce---EeeccccCeEEEEeecC-CCEEEEEeCCCcEEEeEcC
Q 036510          247 DQWEGK---VLHDFKTPVYRVSWSLT-GNILAVADGNNNVTLWEEA  288 (288)
Q Consensus       247 ~~~~~~---~~~~~~~~i~~~~~spd-g~~l~s~~~d~~v~~w~~~  288 (288)
                      ++.-+.   ...-|+..|++++|+|. .++|++|+.||.|++|.++
T Consensus       266 ~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  266 EPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            111111   11235568999999996 6789999999999999853

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=5.2e-37  Score=245.69  Aligned_cols=253  Identities=27%  Similarity=0.449  Sum_probs=208.9

Q ss_pred             CCCCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCc
Q 036510            1 MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGT   80 (288)
Q Consensus         1 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~   80 (288)
                      |.|...++||++.|+.++|+|+|.+|+|||.|..|.||++.+ .-+....+++|.++|..+.|.++  +..++|+|.|++
T Consensus        37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g-dceN~~~lkgHsgAVM~l~~~~d--~s~i~S~gtDk~  113 (338)
T KOG0265|consen   37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYG-DCENFWVLKGHSGAVMELHGMRD--GSHILSCGTDKT  113 (338)
T ss_pred             cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccc-cccceeeeccccceeEeeeeccC--CCEEEEecCCce
Confidence            456778889999999999999999999999999999999864 33567888999999999999875  899999999999


Q ss_pred             EEEeecCCCCceEEeEEeecCCCceeEEEeccCCCC-eEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCC
Q 036510           81 VIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELG-LCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAP  159 (288)
Q Consensus        81 v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~-~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p  159 (288)
                      ++.||++++.   ..+.+++|.+.|+++.  |...+ .++.+|+.|+++++||+|.......+    ..+.+++++.|.-
T Consensus       114 v~~wD~~tG~---~~rk~k~h~~~vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~----~~kyqltAv~f~d  184 (338)
T KOG0265|consen  114 VRGWDAETGK---RIRKHKGHTSFVNSLD--PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF----ENKYQLTAVGFKD  184 (338)
T ss_pred             EEEEecccce---eeehhccccceeeecC--ccccCCeEEEecCCCceEEEEeecccchhhcc----ccceeEEEEEecc
Confidence            9999999876   4455778999999997  44333 46888999999999999976544322    1245688888876


Q ss_pred             CCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEE
Q 036510          160 STAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVII  239 (288)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~i  239 (288)
                      +.              ..+.+|+.|+.|++||++.+    +..+.+.||.+.|..+..+|++    .++.+-+.|.++++
T Consensus       185 ~s--------------~qv~sggIdn~ikvWd~r~~----d~~~~lsGh~DtIt~lsls~~g----s~llsnsMd~tvrv  242 (338)
T KOG0265|consen  185 TS--------------DQVISGGIDNDIKVWDLRKN----DGLYTLSGHADTITGLSLSRYG----SFLLSNSMDNTVRV  242 (338)
T ss_pred             cc--------------cceeeccccCceeeeccccC----cceEEeecccCceeeEEeccCC----CccccccccceEEE
Confidence            55              56889999999999999876    5788999999999999999984    67999999999999


Q ss_pred             EEeecCCCccc-ceEe----eccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          240 WTVAREGDQWE-GKVL----HDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       240 w~~~~~~~~~~-~~~~----~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ||.+....... ....    +.++.....++|+|+++.+..|++|+.|++||.
T Consensus       243 wd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~  295 (338)
T KOG0265|consen  243 WDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDT  295 (338)
T ss_pred             EEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeec
Confidence            99975321111 1222    233456889999999999999999999999994

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=4.2e-37  Score=273.20  Aligned_cols=207  Identities=26%  Similarity=0.458  Sum_probs=185.6

Q ss_pred             ccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510            5 KIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW   84 (288)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw   84 (288)
                      +.+.||+++|++.+|+|+.++|+|+|.|+++|||.+.  +..++..+.||..+||.+.|+|  .|-+|||+|.|++.++|
T Consensus       445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~--t~s~~V~y~GH~~PVwdV~F~P--~GyYFatas~D~tArLW  520 (707)
T KOG0263|consen  445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLD--TWSCLVIYKGHLAPVWDVQFAP--RGYYFATASHDQTARLW  520 (707)
T ss_pred             EEeecCCCceeeeeecccccceeeccCCcceeeeecc--cceeEEEecCCCcceeeEEecC--CceEEEecCCCceeeee
Confidence            3467999999999999999999999999999999985  4577889999999999999985  48999999999999999


Q ss_pred             ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510           85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG  164 (288)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~  164 (288)
                      ......   ..+.+.+|...|.|++|||+  ..++++|+.|.++|+||..++..   +++..+|..+|+++.|||.+   
T Consensus       521 s~d~~~---PlRifaghlsDV~cv~FHPN--s~Y~aTGSsD~tVRlWDv~~G~~---VRiF~GH~~~V~al~~Sp~G---  589 (707)
T KOG0263|consen  521 STDHNK---PLRIFAGHLSDVDCVSFHPN--SNYVATGSSDRTVRLWDVSTGNS---VRIFTGHKGPVTALAFSPCG---  589 (707)
T ss_pred             ecccCC---chhhhcccccccceEEECCc--ccccccCCCCceEEEEEcCCCcE---EEEecCCCCceEEEEEcCCC---
Confidence            875533   45678899999999999998  67899999999999999988743   56678999999999999987   


Q ss_pred             ceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510          165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR  244 (288)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~  244 (288)
                                 ++|++|+.|+.|++||+..+    +.+..+.+|++.|.++.||.++    ..||+|+.|.+|++||+..
T Consensus       590 -----------r~LaSg~ed~~I~iWDl~~~----~~v~~l~~Ht~ti~SlsFS~dg----~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  590 -----------RYLASGDEDGLIKIWDLANG----SLVKQLKGHTGTIYSLSFSRDG----NVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             -----------ceEeecccCCcEEEEEcCCC----cchhhhhcccCceeEEEEecCC----CEEEecCCCCeEEEEEchh
Confidence                       89999999999999999887    5677889999999999999984    7899999999999999975


Q ss_pred             C
Q 036510          245 E  245 (288)
Q Consensus       245 ~  245 (288)
                      .
T Consensus       651 ~  651 (707)
T KOG0263|consen  651 V  651 (707)
T ss_pred             h
Confidence            3

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.5e-36  Score=255.71  Aligned_cols=249  Identities=26%  Similarity=0.462  Sum_probs=208.1

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN   90 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~   90 (288)
                      ...|++++|+-+|+.||+|+.||.+++|+.++   .++.+|..|+++|.++.|+.  .|++|++++.|+++.|||..++.
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G---~l~~tl~~HkgPI~slKWnk--~G~yilS~~vD~ttilwd~~~g~  309 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDG---NLISTLGQHKGPIFSLKWNK--KGTYILSGGVDGTTILWDAHTGT  309 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecCc---hhhhhhhccCCceEEEEEcC--CCCEEEeccCCccEEEEeccCce
Confidence            46899999999999999999999999999754   56788899999999999985  48999999999999999974322


Q ss_pred             c--------------------------------------eEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEe
Q 036510           91 E--------------------------------------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFT  132 (288)
Q Consensus        91 ~--------------------------------------~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d  132 (288)
                      .                                      -.+..++.+|.++|+++.|+|.  +.+|++++.|++++||.
T Consensus       310 ~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~t--g~LLaS~SdD~TlkiWs  387 (524)
T KOG0273|consen  310 VKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPT--GSLLASCSDDGTLKIWS  387 (524)
T ss_pred             EEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCC--CceEEEecCCCeeEeee
Confidence            0                                      0012356689999999999997  78999999999999999


Q ss_pred             ecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcce
Q 036510          133 ARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWV  212 (288)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V  212 (288)
                      ......   ...+++|...|..+.|+|.++...     -.+....+++++.|++|++||+..+    .+++.+..|..+|
T Consensus       388 ~~~~~~---~~~l~~Hskei~t~~wsp~g~v~~-----n~~~~~~l~sas~dstV~lwdv~~g----v~i~~f~kH~~pV  455 (524)
T KOG0273|consen  388 MGQSNS---VHDLQAHSKEIYTIKWSPTGPVTS-----NPNMNLMLASASFDSTVKLWDVESG----VPIHTLMKHQEPV  455 (524)
T ss_pred             cCCCcc---hhhhhhhccceeeEeecCCCCccC-----CCcCCceEEEeecCCeEEEEEccCC----ceeEeeccCCCce
Confidence            765543   345678999999999999985211     1223467999999999999999887    5788899999999


Q ss_pred             EEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeecc--ccCeEEEEeecCCCEEEEEeCCCcEEEeEcC
Q 036510          213 RDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDF--KTPVYRVSWSLTGNILAVADGNNNVTLWEEA  288 (288)
Q Consensus       213 ~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~--~~~i~~~~~spdg~~l~s~~~d~~v~~w~~~  288 (288)
                      .+|+|+|++    .++|+|+.|+.|.||+++..      ++++..  .+.|..++||.+|.+|..+-+|+.+++-|++
T Consensus       456 ysvafS~~g----~ylAsGs~dg~V~iws~~~~------~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  456 YSVAFSPNG----RYLASGSLDGCVHIWSTKTG------KLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             EEEEecCCC----cEEEecCCCCeeEeccccch------heeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            999999984    79999999999999998743      334433  3568999999999999999999999998864

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=8.6e-36  Score=237.97  Aligned_cols=253  Identities=17%  Similarity=0.328  Sum_probs=209.5

Q ss_pred             CCCCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCc
Q 036510            1 MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGT   80 (288)
Q Consensus         1 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~   80 (288)
                      |..++++.||...|+++.|++|.++|+|+|.||.+-|||.....  -.+.+.-...=|..++|+|.  |+.+++|+.|+.
T Consensus        45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn--K~haipl~s~WVMtCA~sPS--g~~VAcGGLdN~  120 (343)
T KOG0286|consen   45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTN--KVHAIPLPSSWVMTCAYSPS--GNFVACGGLDNK  120 (343)
T ss_pred             eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccc--ceeEEecCceeEEEEEECCC--CCeEEecCcCce
Confidence            45677899999999999999999999999999999999974322  23334445666889999864  899999999999


Q ss_pred             EEEeecCCC--C-ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEe
Q 036510           81 VIIWKEGNS--N-EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSW  157 (288)
Q Consensus        81 v~iwd~~~~--~-~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~  157 (288)
                      ..||++...  . .....+.+.+|.+-+.|+.|-+|   ..+++++.|.+..+||+.++..   .....+|...|.++++
T Consensus       121 Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD---~~ilT~SGD~TCalWDie~g~~---~~~f~GH~gDV~slsl  194 (343)
T KOG0286|consen  121 CSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD---NHILTGSGDMTCALWDIETGQQ---TQVFHGHTGDVMSLSL  194 (343)
T ss_pred             eEEEecccccccccceeeeeecCccceeEEEEEcCC---CceEecCCCceEEEEEcccceE---EEEecCCcccEEEEec
Confidence            999998643  1 12344678899999999999875   3588999999999999998754   3455699999999999


Q ss_pred             CCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcE
Q 036510          158 APSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKV  237 (288)
Q Consensus       158 ~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i  237 (288)
                      +|...             +.++||+.|++.+|||++.+    .+++++.+|..-|++|+|.|++    .-|++||+|+++
T Consensus       195 ~p~~~-------------ntFvSg~cD~~aklWD~R~~----~c~qtF~ghesDINsv~ffP~G----~afatGSDD~tc  253 (343)
T KOG0286|consen  195 SPSDG-------------NTFVSGGCDKSAKLWDVRSG----QCVQTFEGHESDINSVRFFPSG----DAFATGSDDATC  253 (343)
T ss_pred             CCCCC-------------CeEEecccccceeeeeccCc----ceeEeecccccccceEEEccCC----CeeeecCCCcee
Confidence            99532             88999999999999999997    4778899999999999999984    569999999999


Q ss_pred             EEEEeecCCCcccceEeec--cccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          238 IIWTVAREGDQWEGKVLHD--FKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       238 ~iw~~~~~~~~~~~~~~~~--~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      |+||++.-++   ...+..  ...+|++++||..|++|.+|-.|.++.|||.
T Consensus       254 RlyDlRaD~~---~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt  302 (343)
T KOG0286|consen  254 RLYDLRADQE---LAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDT  302 (343)
T ss_pred             EEEeecCCcE---EeeeccCcccCCceeEEEcccccEEEeeecCCceeEeec
Confidence            9999986421   122211  1358999999999999999999999999993

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=9.7e-38  Score=258.81  Aligned_cols=246  Identities=24%  Similarity=0.415  Sum_probs=207.1

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccc-cCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHK-GAVWEVAWAHPKFGSILASCSFDGTVIIW   84 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~d~~v~iw   84 (288)
                      ++..|+.+|.+++|+++|.+++||+.+|.|++|+.+..   .+..+.+|+ ..|.+++|+|.  ...|+|||+||+|+||
T Consensus       133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn---nVk~~~ahh~eaIRdlafSpn--DskF~t~SdDg~ikiW  207 (464)
T KOG0284|consen  133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN---NVKIIQAHHAEAIRDLAFSPN--DSKFLTCSDDGTIKIW  207 (464)
T ss_pred             HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh---hhHHhhHhhhhhhheeccCCC--CceeEEecCCCeEEEE
Confidence            45689999999999999999999999999999987532   344455555 99999999974  5799999999999999


Q ss_pred             ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510           85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG  164 (288)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~  164 (288)
                      |.....+   -..+.+|.-.|.|++|||.  ..++++|+.|+.|++||.+++.++.   .+.+|+..|..+.|+|++   
T Consensus       208 df~~~ke---e~vL~GHgwdVksvdWHP~--kgLiasgskDnlVKlWDprSg~cl~---tlh~HKntVl~~~f~~n~---  276 (464)
T KOG0284|consen  208 DFRMPKE---ERVLRGHGWDVKSVDWHPT--KGLIASGSKDNLVKLWDPRSGSCLA---TLHGHKNTVLAVKFNPNG---  276 (464)
T ss_pred             eccCCch---hheeccCCCCcceeccCCc--cceeEEccCCceeEeecCCCcchhh---hhhhccceEEEEEEcCCC---
Confidence            9876553   3456899999999999997  5689999999999999999886543   346799999999999997   


Q ss_pred             ceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510          165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR  244 (288)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~  244 (288)
                                 ++|+|+|.|..++++|++.-    +.+..+++|...|+++.|+|-.   .++|++|+.|+.|..|.+-.
T Consensus       277 -----------N~Llt~skD~~~kv~DiR~m----kEl~~~r~Hkkdv~~~~WhP~~---~~lftsgg~Dgsvvh~~v~~  338 (464)
T KOG0284|consen  277 -----------NWLLTGSKDQSCKVFDIRTM----KELFTYRGHKKDVTSLTWHPLN---ESLFTSGGSDGSVVHWVVGL  338 (464)
T ss_pred             -----------CeeEEccCCceEEEEehhHh----HHHHHhhcchhhheeecccccc---ccceeeccCCCceEEEeccc
Confidence                       78999999999999999842    4566789999999999999963   57899999999999998863


Q ss_pred             CCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          245 EGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       245 ~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ...  ...+-..|...|++++|+|=|.+|++|+.|+++++|..
T Consensus       339 ~~p--~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  339 EEP--LGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             ccc--ccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence            211  11222345678999999999999999999999999963

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.5e-36  Score=247.24  Aligned_cols=259  Identities=27%  Similarity=0.426  Sum_probs=216.8

Q ss_pred             ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510            7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE   86 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~   86 (288)
                      +.||++.|.+|+|+-.|++|++++.|=.+++||.+. ..+++..+.+|...|.+++|-|.  |.+++|+|.|.+|++|+.
T Consensus       146 LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~-~~~c~ks~~gh~h~vS~V~f~P~--gd~ilS~srD~tik~We~  222 (406)
T KOG0295|consen  146 LRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDT-FFRCIKSLIGHEHGVSSVFFLPL--GDHILSCSRDNTIKAWEC  222 (406)
T ss_pred             hhccccceeEEEEecCccEEEecCCccchhheeHHH-HHHHHHHhcCcccceeeEEEEec--CCeeeecccccceeEEec
Confidence            569999999999999999999999998899999863 35678889999999999999764  799999999999999999


Q ss_pred             CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCce
Q 036510           87 GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGAL  166 (288)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~  166 (288)
                      .++.   .+.++.+|...|.-++.+.|  +.++|+++.|++|++|-+.+.++..   .+..|.-.|.+++|.|......+
T Consensus       223 ~tg~---cv~t~~~h~ewvr~v~v~~D--Gti~As~s~dqtl~vW~~~t~~~k~---~lR~hEh~vEci~wap~~~~~~i  294 (406)
T KOG0295|consen  223 DTGY---CVKTFPGHSEWVRMVRVNQD--GTIIASCSNDQTLRVWVVATKQCKA---ELREHEHPVECIAWAPESSYPSI  294 (406)
T ss_pred             ccce---eEEeccCchHhEEEEEecCC--eeEEEecCCCceEEEEEeccchhhh---hhhccccceEEEEecccccCcch
Confidence            8775   56789999999999998776  8899999999999999987764322   23467778999999998753222


Q ss_pred             ec-ccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510          167 VG-SGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE  245 (288)
Q Consensus       167 ~~-~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~  245 (288)
                      .. .+.-+.+.++.+++.|++||+||+.++    .|+.++.+|.++|+.++|+|.    ++||+|+.+|+++++||++..
T Consensus       295 ~~at~~~~~~~~l~s~SrDktIk~wdv~tg----~cL~tL~ghdnwVr~~af~p~----Gkyi~ScaDDktlrvwdl~~~  366 (406)
T KOG0295|consen  295 SEATGSTNGGQVLGSGSRDKTIKIWDVSTG----MCLFTLVGHDNWVRGVAFSPG----GKYILSCADDKTLRVWDLKNL  366 (406)
T ss_pred             hhccCCCCCccEEEeecccceEEEEeccCC----eEEEEEecccceeeeeEEcCC----CeEEEEEecCCcEEEEEeccc
Confidence            21 122234578999999999999999998    578889999999999999997    489999999999999999864


Q ss_pred             CCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          246 GDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       246 ~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      +  +. ..+.-|.--+++++|+.+-.++++|+-|.++++|.-
T Consensus       367 ~--cm-k~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  367 Q--CM-KTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             e--ee-eccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            2  11 112234556899999999999999999999999973

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.4e-36  Score=234.17  Aligned_cols=247  Identities=27%  Similarity=0.442  Sum_probs=207.2

Q ss_pred             cccceEEEEEcCC-CCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCC
Q 036510           10 HEDTVHDVAMDYY-GKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN   88 (288)
Q Consensus        10 h~~~v~~~~~s~~-g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~   88 (288)
                      -++.++.|+|++. .+.+++++.||+++|||...+ ..+++.++.|+..|+++.|+. .....++++|.|++||+|+..-
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~-s~Pi~~~kEH~~EV~Svdwn~-~~r~~~ltsSWD~TiKLW~~~r  136 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP-SKPIHKFKEHKREVYSVDWNT-VRRRIFLTSSWDGTIKLWDPNR  136 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCC-CcchhHHHhhhhheEEecccc-ccceeEEeeccCCceEeecCCC
Confidence            4688999999986 488999999999999997644 357889999999999999975 3578889999999999999765


Q ss_pred             CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceec
Q 036510           89 SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG  168 (288)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~  168 (288)
                      ++   .+.++.+|...|....|+|.. +.++++++.|+++++||+|..+..   ...++|...+.+++|+.-..      
T Consensus       137 ~~---Sv~Tf~gh~~~Iy~a~~sp~~-~nlfas~Sgd~~l~lwdvr~~gk~---~~i~ah~~Eil~cdw~ky~~------  203 (311)
T KOG0277|consen  137 PN---SVQTFNGHNSCIYQAAFSPHI-PNLFASASGDGTLRLWDVRSPGKF---MSIEAHNSEILCCDWSKYNH------  203 (311)
T ss_pred             Cc---ceEeecCCccEEEEEecCCCC-CCeEEEccCCceEEEEEecCCCce---eEEEeccceeEeecccccCC------
Confidence            54   356789999999999999985 678999999999999999987543   33578999999999987653      


Q ss_pred             ccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCc
Q 036510          169 SGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ  248 (288)
Q Consensus       169 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~  248 (288)
                             ++|+||+.|+.|++||++.-   ...+.++.+|.-.|+.|.|||..   ...|||+|.|-++||||...... 
T Consensus       204 -------~vl~Tg~vd~~vr~wDir~~---r~pl~eL~gh~~AVRkvk~Sph~---~~lLaSasYDmT~riw~~~~~ds-  269 (311)
T KOG0277|consen  204 -------NVLATGGVDNLVRGWDIRNL---RTPLFELNGHGLAVRKVKFSPHH---ASLLASASYDMTVRIWDPERQDS-  269 (311)
T ss_pred             -------cEEEecCCCceEEEEehhhc---cccceeecCCceEEEEEecCcch---hhHhhhccccceEEecccccchh-
Confidence                   78999999999999999863   23466789999999999999975   46899999999999999875421 


Q ss_pred             ccceEeeccccCeEEEEeec-CCCEEEEEeCCCcEEEeE
Q 036510          249 WEGKVLHDFKTPVYRVSWSL-TGNILAVADGNNNVTLWE  286 (288)
Q Consensus       249 ~~~~~~~~~~~~i~~~~~sp-dg~~l~s~~~d~~v~~w~  286 (288)
                       ..+....|..-+..+.||+ ++.++|+.+=|+.+.||+
T Consensus       270 -~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  270 -AIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             -hhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence             1233445566788899998 678999999999999997

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.5e-35  Score=260.00  Aligned_cols=253  Identities=25%  Similarity=0.372  Sum_probs=213.8

Q ss_pred             CccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCC--CceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcE
Q 036510            4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNN--TSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTV   81 (288)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v   81 (288)
                      +++..||++.|.++....+|-+|+|||+|+++++|.+++.  ...++....+|+..|.+++++.. ....|+++|.|.++
T Consensus       358 c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~-~asffvsvS~D~tl  436 (775)
T KOG0319|consen  358 CQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKL-GASFFVSVSQDCTL  436 (775)
T ss_pred             eEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeeccc-CccEEEEecCCceE
Confidence            4578899999999986667889999999999999988432  22346778899999999999754 46799999999999


Q ss_pred             EEeecCCCCc--eEEeE----EeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEE
Q 036510           82 IIWKEGNSNE--WIKDH----VFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSV  155 (288)
Q Consensus        82 ~iwd~~~~~~--~~~~~----~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i  155 (288)
                      ++|++....+  .....    +...|.+.|+|++.+|+  ..++|+|++|++.+||++.+   ......+.+|+.+|.++
T Consensus       437 K~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n--dkLiAT~SqDktaKiW~le~---~~l~~vLsGH~RGvw~V  511 (775)
T KOG0319|consen  437 KLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN--DKLIATGSQDKTAKIWDLEQ---LRLLGVLSGHTRGVWCV  511 (775)
T ss_pred             EEecCCCcccccccceehhhHHHHhhcccccceEecCC--CceEEecccccceeeecccC---ceEEEEeeCCccceEEE
Confidence            9999865211  11111    22359999999999997  57899999999999999983   34556788999999999


Q ss_pred             EeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCC
Q 036510          156 SWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG  235 (288)
Q Consensus       156 ~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~  235 (288)
                      .|+|..              +.++|+|.|++||||.+.+.    .|++++.||...|..++|-.+    +++|+|++.||
T Consensus       512 ~Fs~~d--------------q~laT~SgD~TvKIW~is~f----SClkT~eGH~~aVlra~F~~~----~~qliS~~adG  569 (775)
T KOG0319|consen  512 SFSKND--------------QLLATCSGDKTVKIWSISTF----SCLKTFEGHTSAVLRASFIRN----GKQLISAGADG  569 (775)
T ss_pred             Eecccc--------------ceeEeccCCceEEEEEeccc----eeeeeecCccceeEeeeeeeC----CcEEEeccCCC
Confidence            999987              78999999999999999875    689999999999999999987    47899999999


Q ss_pred             cEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          236 KVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       236 ~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      .|++|+++.+.  + ...+..|...|++++-+|++.+|++|++|+.|.+|.+
T Consensus       570 liKlWnikt~e--C-~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD  618 (775)
T KOG0319|consen  570 LIKLWNIKTNE--C-EMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKD  618 (775)
T ss_pred             cEEEEeccchh--h-hhhhhhccceeEEEeecCccceeEecCCCeEEEEeec
Confidence            99999998642  2 2456788999999999999999999999999999983

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2e-36  Score=246.93  Aligned_cols=240  Identities=23%  Similarity=0.461  Sum_probs=203.3

Q ss_pred             ccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510            5 KIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW   84 (288)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw   84 (288)
                      +++.||++.|.|+.|.  .+.|+|||.|.+|++||++.  ++++.++-+|...|..+.|+    +.+++++|.|.++.+|
T Consensus       231 ~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~t--ge~l~tlihHceaVLhlrf~----ng~mvtcSkDrsiaVW  302 (499)
T KOG0281|consen  231 KILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNT--GEPLNTLIHHCEAVLHLRFS----NGYMVTCSKDRSIAVW  302 (499)
T ss_pred             HhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccC--CchhhHHhhhcceeEEEEEe----CCEEEEecCCceeEEE
Confidence            4678999999988876  56999999999999999954  57789999999999999997    5799999999999999


Q ss_pred             ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510           85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG  164 (288)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~  164 (288)
                      |+.......+.+.+.+|...|+.+.|.    .+++++++.|.+|++|++.+..   -.+...+|.-+|.|+.+.      
T Consensus       303 dm~sps~it~rrVLvGHrAaVNvVdfd----~kyIVsASgDRTikvW~~st~e---fvRtl~gHkRGIAClQYr------  369 (499)
T KOG0281|consen  303 DMASPTDITLRRVLVGHRAAVNVVDFD----DKYIVSASGDRTIKVWSTSTCE---FVRTLNGHKRGIACLQYR------  369 (499)
T ss_pred             eccCchHHHHHHHHhhhhhheeeeccc----cceEEEecCCceEEEEecccee---eehhhhcccccceehhcc------
Confidence            997765444556678999999999986    3589999999999999987642   345677899999988764      


Q ss_pred             ceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510          165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR  244 (288)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~  244 (288)
                                ++++++||.|++|++||+..|    .|+..++||.+-|+++.|..      ..||+|+.||+|++||+..
T Consensus       370 ----------~rlvVSGSSDntIRlwdi~~G----~cLRvLeGHEeLvRciRFd~------krIVSGaYDGkikvWdl~a  429 (499)
T KOG0281|consen  370 ----------DRLVVSGSSDNTIRLWDIECG----ACLRVLEGHEELVRCIRFDN------KRIVSGAYDGKIKVWDLQA  429 (499)
T ss_pred             ----------CeEEEecCCCceEEEEecccc----HHHHHHhchHHhhhheeecC------ceeeeccccceEEEEeccc
Confidence                      278999999999999999988    67888999999999999975      4799999999999999987


Q ss_pred             CCCcccc------eEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          245 EGDQWEG------KVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       245 ~~~~~~~------~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ..++...      ...-+|.+.|..++|  |..+|+++++|.+|-|||+
T Consensus       430 aldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdF  476 (499)
T KOG0281|consen  430 ALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDF  476 (499)
T ss_pred             ccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEc
Confidence            6554111      112356678999999  8889999999999999994

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=6.3e-35  Score=245.96  Aligned_cols=250  Identities=26%  Similarity=0.433  Sum_probs=200.5

Q ss_pred             ccccceEEEEEcCCCC-EEEEeeCCCcEEEEEeCCCCce--------eeEEEec----cccCeEEEEecCCCCCCEEEEe
Q 036510            9 GHEDTVHDVAMDYYGK-RLATASSDYSIKIIGVGNNTSQ--------HLAKLSG----HKGAVWEVAWAHPKFGSILASC   75 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~-~l~s~~~d~~i~lwd~~~~~~~--------~~~~~~~----h~~~v~~~~~~~~~~~~~l~s~   75 (288)
                      +|+.+|.+.+|+|-.. .|++|+.|.+.++|++......        ....+.+    ....|++++|+++  |..||+|
T Consensus       176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~--G~~LatG  253 (524)
T KOG0273|consen  176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNND--GTLLATG  253 (524)
T ss_pred             cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCC--CCeEEEe
Confidence            4999999999999654 8999999999999998531111        1111112    2367999999875  9999999


Q ss_pred             eCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCee---------------
Q 036510           76 SFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWD---------------  140 (288)
Q Consensus        76 s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~---------------  140 (288)
                      +.||.++||+.. +.   +..++..|++||.+|.|+..  +.++++++-|+++.+||...+...+               
T Consensus       254 ~~~G~~riw~~~-G~---l~~tl~~HkgPI~slKWnk~--G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~  327 (524)
T KOG0273|consen  254 SEDGEARIWNKD-GN---LISTLGQHKGPIFSLKWNKK--GTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ  327 (524)
T ss_pred             ecCcEEEEEecC-ch---hhhhhhccCCceEEEEEcCC--CCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe
Confidence            999999999874 33   45677889999999999987  7789999999999999985332110               


Q ss_pred             -----------------------eEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCce
Q 036510          141 -----------------------TSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIW  197 (288)
Q Consensus       141 -----------------------~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  197 (288)
                                             +.....+|.+.|.++.|+|.+              .+|+|+|.|+++|||.+...  
T Consensus       328 ~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg--------------~LLaS~SdD~TlkiWs~~~~--  391 (524)
T KOG0273|consen  328 SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTG--------------SLLASCSDDGTLKIWSMGQS--  391 (524)
T ss_pred             cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCC--------------ceEEEecCCCeeEeeecCCC--
Confidence                                   111244688889999999887              78999999999999998665  


Q ss_pred             eeeeeeccccCCcceEEEEecCCCCC-----CCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCE
Q 036510          198 KMDCFPALQMHTDWVRDVAWAPNLGL-----PKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNI  272 (288)
Q Consensus       198 ~~~~~~~~~~h~~~V~~v~~sp~~~~-----~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~  272 (288)
                        .+.+.+.+|...|..+.|+|++..     .+..+++++.|++|++||+.....   .-.+.+|..||++++|||+|++
T Consensus       392 --~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~---i~~f~kH~~pVysvafS~~g~y  466 (524)
T KOG0273|consen  392 --NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP---IHTLMKHQEPVYSVAFSPNGRY  466 (524)
T ss_pred             --cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce---eEeeccCCCceEEEEecCCCcE
Confidence              467788999999999999997631     457899999999999999986421   1234467899999999999999


Q ss_pred             EEEEeCCCcEEEeEc
Q 036510          273 LAVADGNNNVTLWEE  287 (288)
Q Consensus       273 l~s~~~d~~v~~w~~  287 (288)
                      +|+|+.||.|++|++
T Consensus       467 lAsGs~dg~V~iws~  481 (524)
T KOG0273|consen  467 LASGSLDGCVHIWST  481 (524)
T ss_pred             EEecCCCCeeEeccc
Confidence            999999999999984

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.8e-34  Score=235.01  Aligned_cols=251  Identities=24%  Similarity=0.374  Sum_probs=200.1

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      ...||.+.|.++++.|.+.++++|+.|++++|||+.  +++++.++.||...|..+++|.-  ..|+.|++.|+.|+-||
T Consensus       146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDla--tg~LkltltGhi~~vr~vavS~r--HpYlFs~gedk~VKCwD  221 (460)
T KOG0285|consen  146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLA--TGQLKLTLTGHIETVRGVAVSKR--HPYLFSAGEDKQVKCWD  221 (460)
T ss_pred             hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcc--cCeEEEeecchhheeeeeeeccc--CceEEEecCCCeeEEEe
Confidence            456999999999999999999999999999999995  45888999999999999999853  56999999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      +...+   .++.+.+|-..|.|++.+|.  -.++++|+.|.++++||+|+..   ....+.+|...|.++.+.|..+   
T Consensus       222 Le~nk---vIR~YhGHlS~V~~L~lhPT--ldvl~t~grDst~RvWDiRtr~---~V~~l~GH~~~V~~V~~~~~dp---  290 (460)
T KOG0285|consen  222 LEYNK---VIRHYHGHLSGVYCLDLHPT--LDVLVTGGRDSTIRVWDIRTRA---SVHVLSGHTNPVASVMCQPTDP---  290 (460)
T ss_pred             chhhh---hHHHhccccceeEEEecccc--ceeEEecCCcceEEEeeecccc---eEEEecCCCCcceeEEeecCCC---
Confidence            97654   23456789999999999997  5789999999999999999753   3567789999999999988763   


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCC-----------------------
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLG-----------------------  222 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~-----------------------  222 (288)
                                 .++|||.|.+|++||++.+..    ...+..|.-.|++++.+|...                       
T Consensus       291 -----------qvit~S~D~tvrlWDl~agkt----~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~n  355 (460)
T KOG0285|consen  291 -----------QVITGSHDSTVRLWDLRAGKT----MITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQN  355 (460)
T ss_pred             -----------ceEEecCCceEEEeeeccCce----eEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhc
Confidence                       489999999999999987632    223333444444444443110                       


Q ss_pred             -------------CCCcEEEEEeCCCcEEEEEeecCCCcccceEeecc-----ccCeEEEEeecCCCEEEEEeCCCcEEE
Q 036510          223 -------------LPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDF-----KTPVYRVSWSLTGNILAVADGNNNVTL  284 (288)
Q Consensus       223 -------------~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~-----~~~i~~~~~spdg~~l~s~~~d~~v~~  284 (288)
                                   +.+..+++|++.+.+.+||.++.........+-+.     +..|++.+|...|..|++|..|++|++
T Consensus       356 lsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~  435 (460)
T KOG0285|consen  356 LSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKM  435 (460)
T ss_pred             cccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEE
Confidence                         01357899999999999999875322122111111     246899999999999999999999999


Q ss_pred             eE
Q 036510          285 WE  286 (288)
Q Consensus       285 w~  286 (288)
                      |+
T Consensus       436 ~k  437 (460)
T KOG0285|consen  436 YK  437 (460)
T ss_pred             Ee
Confidence            98

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=8.9e-35  Score=239.31  Aligned_cols=251  Identities=26%  Similarity=0.364  Sum_probs=200.8

Q ss_pred             ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecC-CCCCCEEEEeeCCCcEEEee
Q 036510            7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH-PKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~d~~v~iwd   85 (288)
                      ..-|++.|.+|+..  ++.|+||++||++++||..   ++...++.||.++|..++|.- ++....|+++|.|.++++|.
T Consensus       101 ~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~---Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~  175 (423)
T KOG0313|consen  101 CFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK---GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWK  175 (423)
T ss_pred             cccchhhhhhhccc--CceEEEeecCCeeEEEecC---CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEE
Confidence            34799999999887  7899999999999999974   477899999999999888863 23345799999999999998


Q ss_pred             cCCCCce-EEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCC----------------------CCeeeE
Q 036510           86 EGNSNEW-IKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARAD----------------------GGWDTS  142 (288)
Q Consensus        86 ~~~~~~~-~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~----------------------~~~~~~  142 (288)
                      ...+... ...+.-.+|...|.+++..++  +..+++|++|.+|.||+....                      +.-.+.
T Consensus       176 ~~~~~~~~~~~~~~~GHk~~V~sVsv~~s--gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~  253 (423)
T KOG0313|consen  176 WNVGENKVKALKVCRGHKRSVDSVSVDSS--GTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL  253 (423)
T ss_pred             ecCchhhhhHHhHhcccccceeEEEecCC--CCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence            7654321 111223489999999999887  667999999999999993211                      001123


Q ss_pred             EeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCC
Q 036510          143 RIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLG  222 (288)
Q Consensus       143 ~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~  222 (288)
                      ..+++|...|.++.|++.               ..++++|.|.+|+.||+.++.    ++..+.+. ...++++++|.. 
T Consensus       254 vtl~GHt~~Vs~V~w~d~---------------~v~yS~SwDHTIk~WDletg~----~~~~~~~~-ksl~~i~~~~~~-  312 (423)
T KOG0313|consen  254 VTLEGHTEPVSSVVWSDA---------------TVIYSVSWDHTIKVWDLETGG----LKSTLTTN-KSLNCISYSPLS-  312 (423)
T ss_pred             EEecccccceeeEEEcCC---------------CceEeecccceEEEEEeeccc----ceeeeecC-cceeEeeccccc-
Confidence            456799999999999984               568999999999999999873    33343333 347999999964 


Q ss_pred             CCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCC-CEEEEEeCCCcEEEeEcC
Q 036510          223 LPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTG-NILAVADGNNNVTLWEEA  288 (288)
Q Consensus       223 ~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg-~~l~s~~~d~~v~~w~~~  288 (288)
                         .+|++||.|..|++||++.+........+.+|.++|.++.|+|.. .+|++|+.|+++++||++
T Consensus       313 ---~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvR  376 (423)
T KOG0313|consen  313 ---KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVR  376 (423)
T ss_pred             ---ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEec
Confidence               689999999999999999876555556677899999999999965 569999999999999964

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-33  Score=223.49  Aligned_cols=256  Identities=20%  Similarity=0.274  Sum_probs=202.2

Q ss_pred             CCCCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCc
Q 036510            1 MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGT   80 (288)
Q Consensus         1 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~   80 (288)
                      |-|. ++.||+.++++|+++.+|.+|.|+++|.++.+|-..+  ++.+.++.||++.||++....+  ...+++||+|.+
T Consensus         1 mrpi-~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n--GerlGty~GHtGavW~~Did~~--s~~liTGSAD~t   75 (327)
T KOG0643|consen    1 MRPI-LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN--GERLGTYDGHTGAVWCCDIDWD--SKHLITGSADQT   75 (327)
T ss_pred             CCcc-ccccCccccceEEecCCCcEEEEecCCCCceEEEecC--CceeeeecCCCceEEEEEecCC--cceeeeccccce
Confidence            4453 4679999999999999999999999999999997533  4779999999999999998754  789999999999


Q ss_pred             EEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEE----eCCCcEEEEeecCCC----CeeeEEeeccCCCCe
Q 036510           81 VIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACG----SSDGNISVFTARADG----GWDTSRIDQAHPVGV  152 (288)
Q Consensus        81 v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg----~~d~~i~i~d~~~~~----~~~~~~~~~~~~~~v  152 (288)
                      +++||+.+++.   ..+++ ...+|..+.|++++ ...+++.    +..+.|.++|++...    .-.+......+...+
T Consensus        76 ~kLWDv~tGk~---la~~k-~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ski  150 (327)
T KOG0643|consen   76 AKLWDVETGKQ---LATWK-TNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKI  150 (327)
T ss_pred             eEEEEcCCCcE---EEEee-cCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccce
Confidence            99999998873   33343 35689999999984 2333322    334578899998543    112233344556778


Q ss_pred             eEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEe
Q 036510          153 TSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASAS  232 (288)
Q Consensus       153 ~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s  232 (288)
                      ++.-|.|-+              ..+++|..|+.|.+||.+++.   +.+.+-+.|...|++++++|+.    ++++++|
T Consensus       151 t~a~Wg~l~--------------~~ii~Ghe~G~is~~da~~g~---~~v~s~~~h~~~Ind~q~s~d~----T~FiT~s  209 (327)
T KOG0643|consen  151 TSALWGPLG--------------ETIIAGHEDGSISIYDARTGK---ELVDSDEEHSSKINDLQFSRDR----TYFITGS  209 (327)
T ss_pred             eeeeecccC--------------CEEEEecCCCcEEEEEcccCc---eeeechhhhccccccccccCCc----ceEEecc
Confidence            899999876              789999999999999999874   4556667898899999999984    8999999


Q ss_pred             CCCcEEEEEeecCCC----------------------------------------------------cccceEeeccccC
Q 036510          233 EDGKVIIWTVAREGD----------------------------------------------------QWEGKVLHDFKTP  260 (288)
Q Consensus       233 ~D~~i~iw~~~~~~~----------------------------------------------------~~~~~~~~~~~~~  260 (288)
                      .|.+-++||...-..                                                    ..+...+++|-+|
T Consensus       210 ~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGP  289 (327)
T KOG0643|consen  210 KDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGP  289 (327)
T ss_pred             cCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccC
Confidence            999999999864210                                                    0111123456689


Q ss_pred             eEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          261 VYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       261 i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      |++++|||||+..+||+.||.|||.-+
T Consensus       290 INsvAfhPdGksYsSGGEDG~VR~h~F  316 (327)
T KOG0643|consen  290 INSVAFHPDGKSYSSGGEDGYVRLHHF  316 (327)
T ss_pred             cceeEECCCCcccccCCCCceEEEEEe
Confidence            999999999999999999999999753

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.9e-33  Score=252.65  Aligned_cols=246  Identities=27%  Similarity=0.422  Sum_probs=204.0

Q ss_pred             cccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC
Q 036510           10 HEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS   89 (288)
Q Consensus        10 h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~   89 (288)
                      |...|.++.|+++|++|++++.|+.+++|+...........+.+|...|..++|+++  +.++++++.|++++|||+...
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d--~~~l~s~s~D~tiriwd~~~~  235 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPD--GSYLLSGSDDKTLRIWDLKDD  235 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCC--CcEEEEecCCceEEEeeccCC
Confidence            478999999999999999999999999999843321256677899999999999975  789999999999999999433


Q ss_pred             CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecc
Q 036510           90 NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS  169 (288)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~  169 (288)
                      .  ..++++.+|...|++++|+|+  +.++++|+.|++|+|||++.+.   ....+++|...|..++|++++        
T Consensus       236 ~--~~~~~l~gH~~~v~~~~f~p~--g~~i~Sgs~D~tvriWd~~~~~---~~~~l~~hs~~is~~~f~~d~--------  300 (456)
T KOG0266|consen  236 G--RNLKTLKGHSTYVTSVAFSPD--GNLLVSGSDDGTVRIWDVRTGE---CVRKLKGHSDGISGLAFSPDG--------  300 (456)
T ss_pred             C--eEEEEecCCCCceEEEEecCC--CCEEEEecCCCcEEEEeccCCe---EEEeeeccCCceEEEEECCCC--------
Confidence            2  256778899999999999998  5789999999999999998742   345678999999999999997        


Q ss_pred             cccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCc--ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCC
Q 036510          170 GFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTD--WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGD  247 (288)
Q Consensus       170 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~--~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~  247 (288)
                            ++|++++.|+.|++||+.++...  +...+.++..  ++++++|+|+.    .+|++++.|+++++||+.... 
T Consensus       301 ------~~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~fsp~~----~~ll~~~~d~~~~~w~l~~~~-  367 (456)
T KOG0266|consen  301 ------NLLVSASYDGTIRVWDLETGSKL--CLKLLSGAENSAPVTSVQFSPNG----KYLLSASLDRTLKLWDLRSGK-  367 (456)
T ss_pred             ------CEEEEcCCCccEEEEECCCCcee--eeecccCCCCCCceeEEEECCCC----cEEEEecCCCeEEEEEccCCc-
Confidence                  78999999999999999887421  3445555544  49999999984    789999999999999998542 


Q ss_pred             cccceEeecccc---CeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          248 QWEGKVLHDFKT---PVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       248 ~~~~~~~~~~~~---~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                        ......+|..   .+.+..+++.|+++++|+.|+.|++|+.
T Consensus       368 --~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~  408 (456)
T KOG0266|consen  368 --SVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDS  408 (456)
T ss_pred             --ceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeC
Confidence              2233344433   5666777899999999999999999995

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.4e-33  Score=223.42  Aligned_cols=269  Identities=36%  Similarity=0.679  Sum_probs=212.0

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCC--CceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNN--TSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVII   83 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i   83 (288)
                      +-++|.+-|+++.|++.|+++|+|+.|.+++|||.+.+  +..+......|.++|+.+.|.||..|+.+|+||.|++++|
T Consensus         8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i   87 (361)
T KOG2445|consen    8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI   87 (361)
T ss_pred             cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence            45699999999999999999999999999999996433  3455666789999999999999999999999999999999


Q ss_pred             eecC------CCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCC---eeeEEeec-------c
Q 036510           84 WKEG------NSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGG---WDTSRIDQ-------A  147 (288)
Q Consensus        84 wd~~------~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~---~~~~~~~~-------~  147 (288)
                      |.-.      .+..|.+..++..-+..|+.+.|.|..-+..+|+++.||+||||...+...   |......+       .
T Consensus        88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~  167 (361)
T KOG2445|consen   88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK  167 (361)
T ss_pred             eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence            9741      124677778888888999999999998888999999999999998765432   22211111       2


Q ss_pred             CCCCeeEEEeCCCCCCCceecccccCCCceeEEeecC-----CcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCC
Q 036510          148 HPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCD-----NTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLG  222 (288)
Q Consensus       148 ~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~  222 (288)
                      +.....|+.|+|....           ..+|+.|+.+     +.++||...++.++-..+.++.+|.++|++++|.|+.+
T Consensus       168 ~~~~~~CvsWn~sr~~-----------~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~G  236 (361)
T KOG2445|consen  168 NKQPCFCVSWNPSRMH-----------EPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIG  236 (361)
T ss_pred             ccCcceEEeecccccc-----------CceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccC
Confidence            4456789999976421           1345655544     37999988776544445667789999999999999876


Q ss_pred             CCCcEEEEEeCCCcEEEEEeecCC-----------C-c--ccc---eEeeccccCeEEEEeecCCCEEEEEeCCCcEEEe
Q 036510          223 LPKSTIASASEDGKVIIWTVAREG-----------D-Q--WEG---KVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLW  285 (288)
Q Consensus       223 ~~~~~l~s~s~D~~i~iw~~~~~~-----------~-~--~~~---~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w  285 (288)
                      .+-.+||+++.|| |+||++....           . .  ...   ..+.+|.+.|.++.|+-.|..|++.+.||.||+|
T Consensus       237 r~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLW  315 (361)
T KOG2445|consen  237 RSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLW  315 (361)
T ss_pred             CceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeeh
Confidence            5557899999999 9999998311           0 0  111   2234677899999999999999999999999999


Q ss_pred             E
Q 036510          286 E  286 (288)
Q Consensus       286 ~  286 (288)
                      +
T Consensus       316 k  316 (361)
T KOG2445|consen  316 K  316 (361)
T ss_pred             h
Confidence            7

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.5e-33  Score=251.97  Aligned_cols=251  Identities=29%  Similarity=0.449  Sum_probs=204.3

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      .+.+|...|.+++|+|+|+++++++.|+++++||+. ..+..++++.+|...|++++|++.  +++++||+.|++|+|||
T Consensus       198 ~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~-~~~~~~~~l~gH~~~v~~~~f~p~--g~~i~Sgs~D~tvriWd  274 (456)
T KOG0266|consen  198 ELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK-DDGRNLKTLKGHSTYVTSVAFSPD--GNLLVSGSDDGTVRIWD  274 (456)
T ss_pred             cccccccceeeeEECCCCcEEEEecCCceEEEeecc-CCCeEEEEecCCCCceEEEEecCC--CCEEEEecCCCcEEEEe
Confidence            346999999999999999999999999999999993 345788999999999999999865  69999999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCC--CeeEEEeCCCCCC
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV--GVTSVSWAPSTAP  163 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~--~v~~i~~~p~~~~  163 (288)
                      +++++   +...+++|.+.|.+++|+++  +.++++++.|+.|++||+..+... .......+..  .+.++.|+|++  
T Consensus       275 ~~~~~---~~~~l~~hs~~is~~~f~~d--~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~fsp~~--  346 (456)
T KOG0266|consen  275 VRTGE---CVRKLKGHSDGISGLAFSPD--GNLLVSASYDGTIRVWDLETGSKL-CLKLLSGAENSAPVTSVQFSPNG--  346 (456)
T ss_pred             ccCCe---EEEeeeccCCceEEEEECCC--CCEEEEcCCCccEEEEECCCCcee-eeecccCCCCCCceeEEEECCCC--
Confidence            98855   56778999999999999998  677888999999999999876421 1222333333  58999999997  


Q ss_pred             CceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEee
Q 036510          164 GALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA  243 (288)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~  243 (288)
                                  .++++++.|+++++||+..+    ++.....+|...+.+ .|++.....+..+++|+.|+.|++|++.
T Consensus       347 ------------~~ll~~~~d~~~~~w~l~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~sg~~d~~v~~~~~~  409 (456)
T KOG0266|consen  347 ------------KYLLSASLDRTLKLWDLRSG----KSVGTYTGHSNLVRC-IFSPTLSTGGKLIYSGSEDGSVYVWDSS  409 (456)
T ss_pred             ------------cEEEEecCCCeEEEEEccCC----cceeeecccCCccee-EecccccCCCCeEEEEeCCceEEEEeCC
Confidence                        78999999999999999876    455566777765423 2333222235789999999999999998


Q ss_pred             cCCCcccceEeecc-ccCeEEEEeecCCCEEEEEe--CCCcEEEeEc
Q 036510          244 REGDQWEGKVLHDF-KTPVYRVSWSLTGNILAVAD--GNNNVTLWEE  287 (288)
Q Consensus       244 ~~~~~~~~~~~~~~-~~~i~~~~~spdg~~l~s~~--~d~~v~~w~~  287 (288)
                      ....   ...+.+| ...+..++++|..+++++++  .|+.+++|+.
T Consensus       410 s~~~---~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~  453 (456)
T KOG0266|consen  410 SGGI---LQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY  453 (456)
T ss_pred             ccch---hhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence            6422   2334556 67899999999999999998  7999999974

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.8e-35  Score=243.46  Aligned_cols=239  Identities=23%  Similarity=0.405  Sum_probs=201.0

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN   90 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~   90 (288)
                      +..|..|.|.|+|+.|++|+..|.+.||+...-..+  ..+.+|.++|.++.|+++  +..++||+.+|.||+|+....+
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFE--tilQaHDs~Vr~m~ws~~--g~wmiSgD~gG~iKyWqpnmnn  171 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFE--TILQAHDSPVRTMKWSHN--GTWMISGDKGGMIKYWQPNMNN  171 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHH--HHhhhhcccceeEEEccC--CCEEEEcCCCceEEecccchhh
Confidence            458889999999999999999999999986432222  235789999999999975  8999999999999999875443


Q ss_pred             ceEEeEEeecC-CCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecc
Q 036510           91 EWIKDHVFEDH-KSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS  169 (288)
Q Consensus        91 ~~~~~~~~~~h-~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~  169 (288)
                          ++.+..| ...|.+++|+|.+  ..+++++.||+|+|||.+....   ...+.+|.-.|.+++|.|..        
T Consensus       172 ----Vk~~~ahh~eaIRdlafSpnD--skF~t~SdDg~ikiWdf~~~ke---e~vL~GHgwdVksvdWHP~k--------  234 (464)
T KOG0284|consen  172 ----VKIIQAHHAEAIRDLAFSPND--SKFLTCSDDGTIKIWDFRMPKE---ERVLRGHGWDVKSVDWHPTK--------  234 (464)
T ss_pred             ----hHHhhHhhhhhhheeccCCCC--ceeEEecCCCeEEEEeccCCch---hheeccCCCCcceeccCCcc--------
Confidence                3344444 4899999999964  3589999999999999986532   23457899999999999987        


Q ss_pred             cccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcc
Q 036510          170 GFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQW  249 (288)
Q Consensus       170 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~  249 (288)
                            .++++||.|+.||+||.+++    .|+.++.+|+..|..+.|+|++    .+|+|+|.|..++++|++..+   
T Consensus       235 ------gLiasgskDnlVKlWDprSg----~cl~tlh~HKntVl~~~f~~n~----N~Llt~skD~~~kv~DiR~mk---  297 (464)
T KOG0284|consen  235 ------GLIASGSKDNLVKLWDPRSG----SCLATLHGHKNTVLAVKFNPNG----NWLLTGSKDQSCKVFDIRTMK---  297 (464)
T ss_pred             ------ceeEEccCCceeEeecCCCc----chhhhhhhccceEEEEEEcCCC----CeeEEccCCceEEEEehhHhH---
Confidence                  78999999999999999998    6888999999999999999985    789999999999999998542   


Q ss_pred             cceEeeccccCeEEEEeec-CCCEEEEEeCCCcEEEeEc
Q 036510          250 EGKVLHDFKTPVYRVSWSL-TGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       250 ~~~~~~~~~~~i~~~~~sp-dg~~l~s~~~d~~v~~w~~  287 (288)
                      +...+..|++-+++++|+| .-.+|.+|+.|+.|..|.+
T Consensus       298 El~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v  336 (464)
T KOG0284|consen  298 ELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVV  336 (464)
T ss_pred             HHHHhhcchhhheeeccccccccceeeccCCCceEEEec
Confidence            2344566788899999999 4678999999999999974

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=8.5e-33  Score=220.88  Aligned_cols=243  Identities=18%  Similarity=0.251  Sum_probs=204.2

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCC----CceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNN----TSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE   86 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~   86 (288)
                      ...|...+|+|.|+++|+|+.|+...||++...    ..+..+.+.+|++-+.++.|..   ...|+++|.|.+..+||+
T Consensus        97 s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d---D~~ilT~SGD~TCalWDi  173 (343)
T KOG0286|consen   97 SSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD---DNHILTGSGDMTCALWDI  173 (343)
T ss_pred             ceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC---CCceEecCCCceEEEEEc
Confidence            467888899999999999999999999998632    1244667899999999999964   468999999999999999


Q ss_pred             CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCce
Q 036510           87 GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGAL  166 (288)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~  166 (288)
                      +++.   +...+.+|.+.|.+|++.|. +++.+++|+-|++.++||+|.+...   +...+|...|.++.|.|++     
T Consensus       174 e~g~---~~~~f~GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~---qtF~ghesDINsv~ffP~G-----  241 (343)
T KOG0286|consen  174 ETGQ---QTQVFHGHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCV---QTFEGHESDINSVRFFPSG-----  241 (343)
T ss_pred             ccce---EEEEecCCcccEEEEecCCC-CCCeEEecccccceeeeeccCccee---EeecccccccceEEEccCC-----
Confidence            8875   56778999999999999995 3778999999999999999987543   4557899999999999997     


Q ss_pred             ecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCC
Q 036510          167 VGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG  246 (288)
Q Consensus       167 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~  246 (288)
                               .-+++|+.|+++++||++..+. +. +.+-..-...|++|+||..    +++|.+|..|.++.+||.-+. 
T Consensus       242 ---------~afatGSDD~tcRlyDlRaD~~-~a-~ys~~~~~~gitSv~FS~S----GRlLfagy~d~~c~vWDtlk~-  305 (343)
T KOG0286|consen  242 ---------DAFATGSDDATCRLYDLRADQE-LA-VYSHDSIICGITSVAFSKS----GRLLFAGYDDFTCNVWDTLKG-  305 (343)
T ss_pred             ---------CeeeecCCCceeEEEeecCCcE-Ee-eeccCcccCCceeEEEccc----ccEEEeeecCCceeEeecccc-
Confidence                     6799999999999999998631 12 1222333447999999986    478889999999999997643 


Q ss_pred             CcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          247 DQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       247 ~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                        .....+.+|++.|.++.-+|||.-+++||=|.++|||.
T Consensus       306 --e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  306 --ERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             --ceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence              23456789999999999999999999999999999994

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.1e-32  Score=235.20  Aligned_cols=271  Identities=23%  Similarity=0.363  Sum_probs=200.7

Q ss_pred             CCCccc---cccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEe---ccccCeEEEEecCCCCCCEEEEe
Q 036510            2 PPQKIE---TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLS---GHKGAVWEVAWAHPKFGSILASC   75 (288)
Q Consensus         2 ~~~~~~---~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~l~s~   75 (288)
                      ||+|+.   ..|...|+++.|+|||.+++|+|.|+++.|||-  .+++.+..+.   +|++.|++|+|+||  +..|+|+
T Consensus       178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDG--ktge~vg~l~~~~aHkGsIfalsWsPD--s~~~~T~  253 (603)
T KOG0318|consen  178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDG--KTGEKVGELEDSDAHKGSIFALSWSPD--STQFLTV  253 (603)
T ss_pred             CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcC--CCccEEEEecCCCCccccEEEEEECCC--CceEEEe
Confidence            666643   368999999999999999999999999999985  4456677777   99999999999975  8999999


Q ss_pred             eCCCcEEEeecCCCCc------------------eE----------------------EeEEeecCCCceeEEEeccCCC
Q 036510           76 SFDGTVIIWKEGNSNE------------------WI----------------------KDHVFEDHKSSVNSIDWAPHEL  115 (288)
Q Consensus        76 s~d~~v~iwd~~~~~~------------------~~----------------------~~~~~~~h~~~v~~l~~~p~~~  115 (288)
                      |+|.++||||+.+...                  |.                      ..+++++|...|+++..+|+  
T Consensus       254 SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d--  331 (603)
T KOG0318|consen  254 SADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPD--  331 (603)
T ss_pred             cCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCC--
Confidence            9999999999854321                  00                      01246689999999999998  


Q ss_pred             CeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCC------------------------------------
Q 036510          116 GLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAP------------------------------------  159 (288)
Q Consensus       116 ~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p------------------------------------  159 (288)
                      +..+.+|+.||.|.-|+...+...  ....+.|+..|.++.-+.                                    
T Consensus       332 ~~~i~SgsyDG~I~~W~~~~g~~~--~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~  409 (603)
T KOG0318|consen  332 GKTIYSGSYDGHINSWDSGSGTSD--RLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPK  409 (603)
T ss_pred             CCEEEeeccCceEEEEecCCcccc--ccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCce
Confidence            578999999999999998654221  111122333333322111                                    


Q ss_pred             ------CCCCCcee------------------------cccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCC
Q 036510          160 ------STAPGALV------------------------GSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHT  209 (288)
Q Consensus       160 ------~~~~~~~~------------------------~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~  209 (288)
                            ++....+.                        .....++++.++.|+.|+.|+||.+.....  +....+..|.
T Consensus       410 ~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l--~ee~~~~~h~  487 (603)
T KOG0318|consen  410 GLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL--KEEAKLLEHR  487 (603)
T ss_pred             eEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcc--cceeeeeccc
Confidence                  11000000                        001234678899999999999999977531  2223456799


Q ss_pred             cceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEcC
Q 036510          210 DWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA  288 (288)
Q Consensus       210 ~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~~  288 (288)
                      .+|++|+||||+    .|||+|-..+.+.+||....+..  .....=|.+.|.+++|||+.+++|+||.|-.|.||.++
T Consensus       488 a~iT~vaySpd~----~yla~~Da~rkvv~yd~~s~~~~--~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~  560 (603)
T KOG0318|consen  488 AAITDVAYSPDG----AYLAAGDASRKVVLYDVASREVK--TNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVK  560 (603)
T ss_pred             CCceEEEECCCC----cEEEEeccCCcEEEEEcccCcee--cceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEcc
Confidence            999999999984    79999999999999999865321  11112245789999999999999999999999999863

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.8e-34  Score=233.90  Aligned_cols=250  Identities=23%  Similarity=0.338  Sum_probs=213.8

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      -+.||..+|+.+-|.|+-..+++++.|.+|++||..  +++....+.||+.+|.+|+|...  |.++++||.|=.+++||
T Consensus       103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~--tg~~e~~LrGHt~sv~di~~~a~--Gk~l~tcSsDl~~~LWd  178 (406)
T KOG0295|consen  103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTE--TGELERSLRGHTDSVFDISFDAS--GKYLATCSSDLSAKLWD  178 (406)
T ss_pred             hhhccccceeeeeeccCceEEEEecCCceEEEEEcc--chhhhhhhhccccceeEEEEecC--ccEEEecCCccchhhee
Confidence            356899999999999999999999999999999984  44668899999999999999764  89999999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      ....  +.+.+.+.+|...|.++.|-|-  +.++++++.|++|+.|++.++-.   .....+|+.-|..+.-+.++    
T Consensus       179 ~~~~--~~c~ks~~gh~h~vS~V~f~P~--gd~ilS~srD~tik~We~~tg~c---v~t~~~h~ewvr~v~v~~DG----  247 (406)
T KOG0295|consen  179 FDTF--FRCIKSLIGHEHGVSSVFFLPL--GDHILSCSRDNTIKAWECDTGYC---VKTFPGHSEWVRMVRVNQDG----  247 (406)
T ss_pred             HHHH--HHHHHHhcCcccceeeEEEEec--CCeeeecccccceeEEeccccee---EEeccCchHhEEEEEecCCe----
Confidence            8642  3345567789999999999997  67899999999999999987643   34556888888888877766    


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCC-----------CCcEEEEEeCC
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGL-----------PKSTIASASED  234 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~-----------~~~~l~s~s~D  234 (288)
                                .++++++.|.++++|=+.++    .|...+++|..+|.+++|.|...+           .+.+++++|.|
T Consensus       248 ----------ti~As~s~dqtl~vW~~~t~----~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD  313 (406)
T KOG0295|consen  248 ----------TIIASCSNDQTLRVWVVATK----QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD  313 (406)
T ss_pred             ----------eEEEecCCCceEEEEEeccc----hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeeccc
Confidence                      78999999999999998876    456678999999999999996533           13589999999


Q ss_pred             CcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          235 GKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       235 ~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ++||+||+...  . ..-.+.+|.++|..++|+|-|++|+|+..|+++|+||.
T Consensus       314 ktIk~wdv~tg--~-cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl  363 (406)
T KOG0295|consen  314 KTIKIWDVSTG--M-CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDL  363 (406)
T ss_pred             ceEEEEeccCC--e-EEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEe
Confidence            99999999864  1 23445788999999999999999999999999999995

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=3.8e-35  Score=239.42  Aligned_cols=232  Identities=19%  Similarity=0.317  Sum_probs=197.7

Q ss_pred             cccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC
Q 036510           10 HEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS   89 (288)
Q Consensus        10 h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~   89 (288)
                      ..+.|+|++..  ...++||..|++|++||.+  ...++..+.||+++|.++.|.    ..+++|||.|.+|++||..++
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n--~~~c~~~L~GHtGSVLCLqyd----~rviisGSSDsTvrvWDv~tg  267 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKN--SLECLKILTGHTGSVLCLQYD----ERVIVSGSSDSTVRVWDVNTG  267 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEeccc--cHHHHHhhhcCCCcEEeeecc----ceEEEecCCCceEEEEeccCC
Confidence            45789998876  4579999999999999984  457889999999999999984    579999999999999999887


Q ss_pred             CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecc
Q 036510           90 NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS  169 (288)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~  169 (288)
                      .   ..+++-+|-..|..+.|+-    .++++++.|.++++||+.........+++-+|...|..+.|+.          
T Consensus       268 e---~l~tlihHceaVLhlrf~n----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~----------  330 (499)
T KOG0281|consen  268 E---PLNTLIHHCEAVLHLRFSN----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD----------  330 (499)
T ss_pred             c---hhhHHhhhcceeEEEEEeC----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc----------
Confidence            6   3456778999999999974    4689999999999999976654444456678998999998864          


Q ss_pred             cccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcc
Q 036510          170 GFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQW  249 (288)
Q Consensus       170 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~  249 (288)
                            ++++|+|.|++||+|++.+.    +++.++.+|+-.|-|+++.      +.++|+||+|++|++||++...   
T Consensus       331 ------kyIVsASgDRTikvW~~st~----efvRtl~gHkRGIAClQYr------~rlvVSGSSDntIRlwdi~~G~---  391 (499)
T KOG0281|consen  331 ------KYIVSASGDRTIKVWSTSTC----EFVRTLNGHKRGIACLQYR------DRLVVSGSSDNTIRLWDIECGA---  391 (499)
T ss_pred             ------ceEEEecCCceEEEEeccce----eeehhhhcccccceehhcc------CeEEEecCCCceEEEEeccccH---
Confidence                  67999999999999999886    6788999999999999875      4689999999999999998642   


Q ss_pred             cceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          250 EGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       250 ~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ....+.+|+.-|.++-|  |.+.|++|+-||+|+|||+
T Consensus       392 cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl  427 (499)
T KOG0281|consen  392 CLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDL  427 (499)
T ss_pred             HHHHHhchHHhhhheee--cCceeeeccccceEEEEec
Confidence            23456778888999999  8899999999999999994

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.7e-33  Score=249.93  Aligned_cols=251  Identities=19%  Similarity=0.335  Sum_probs=193.6

Q ss_pred             CccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCC--------------------------------CC-------
Q 036510            4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGN--------------------------------NT-------   44 (288)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~--------------------------------~~-------   44 (288)
                      |++-.+|++.|.+++||+||+|||+||.|+.|+||.+-.                                ..       
T Consensus       260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            334448999999999999999999999999999998743                                00       


Q ss_pred             -------------------ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCce
Q 036510           45 -------------------SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSV  105 (288)
Q Consensus        45 -------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v  105 (288)
                                         .++++.+.||.+.|.+|.||.   .++|+|+|+|+|||+|++....   +.+.| .|.+-|
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK---n~fLLSSSMDKTVRLWh~~~~~---CL~~F-~HndfV  412 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK---NNFLLSSSMDKTVRLWHPGRKE---CLKVF-SHNDFV  412 (712)
T ss_pred             ccccCCccccCCCccccccccchhhhhccchhheeccccc---CCeeEeccccccEEeecCCCcc---eeeEE-ecCCee
Confidence                               023455679999999999985   6799999999999999997655   34555 599999


Q ss_pred             eEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCC
Q 036510          106 NSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDN  185 (288)
Q Consensus       106 ~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~  185 (288)
                      +|++|+|.+ .+++++|+.|+++|||++....-   ..- .....-|+++.|.|++              +..+.|+.+|
T Consensus       413 TcVaFnPvD-DryFiSGSLD~KvRiWsI~d~~V---v~W-~Dl~~lITAvcy~PdG--------------k~avIGt~~G  473 (712)
T KOG0283|consen  413 TCVAFNPVD-DRYFISGSLDGKVRLWSISDKKV---VDW-NDLRDLITAVCYSPDG--------------KGAVIGTFNG  473 (712)
T ss_pred             EEEEecccC-CCcEeecccccceEEeecCcCee---Eee-hhhhhhheeEEeccCC--------------ceEEEEEecc
Confidence            999999986 67899999999999999975421   111 1123569999999997              7788999999


Q ss_pred             cEEEEEEeCCceeeee-eecc----ccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccc--
Q 036510          186 TVKVWKLYNGIWKMDC-FPAL----QMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFK--  258 (288)
Q Consensus       186 ~i~iwd~~~~~~~~~~-~~~~----~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~--  258 (288)
                      .+++|+.......... +...    ..|. .|+.++|.|..   ...|+..+.|..|||+|.+...   ....++++.  
T Consensus       474 ~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~---~~~vLVTSnDSrIRI~d~~~~~---lv~KfKG~~n~  546 (712)
T KOG0283|consen  474 YCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGD---PDEVLVTSNDSRIRIYDGRDKD---LVHKFKGFRNT  546 (712)
T ss_pred             EEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCC---CCeEEEecCCCceEEEeccchh---hhhhhcccccC
Confidence            9999998764221111 1100    1233 79999999964   3468889999999999986432   123344543  


Q ss_pred             cCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          259 TPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       259 ~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ..-.++.|+.||++|++|+.|.-|+||+.
T Consensus       547 ~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~  575 (712)
T KOG0283|consen  547 SSQISASFSSDGKHIVSASEDSWVYIWKN  575 (712)
T ss_pred             CcceeeeEccCCCEEEEeecCceEEEEeC
Confidence            24578999999999999999999999984

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=3e-33  Score=235.04  Aligned_cols=258  Identities=23%  Similarity=0.405  Sum_probs=207.6

Q ss_pred             ccccceEEEEEcCCC-CEEEEeeCCCcEEEEEeCCCCcee--------eEEEeccccCeEEEEecCCCCCCEEEEeeCCC
Q 036510            9 GHEDTVHDVAMDYYG-KRLATASSDYSIKIIGVGNNTSQH--------LAKLSGHKGAVWEVAWAHPKFGSILASCSFDG   79 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g-~~l~s~~~d~~i~lwd~~~~~~~~--------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~   79 (288)
                      .|++.|+.+..-|.. .++++.+..+.+.|||........        -.+|.||++.-++++|++. ..-.|++++.|+
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~-~~g~Lls~~~d~  200 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQ-QEGTLLSGSDDH  200 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccc-cceeEeeccCCC
Confidence            689999999988754 677888888999999986432111        2378899998899999875 456899999999


Q ss_pred             cEEEeecCCCCc----eEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEE
Q 036510           80 TVIIWKEGNSNE----WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSV  155 (288)
Q Consensus        80 ~v~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i  155 (288)
                      +|++||+.....    ......+.+|...|.-++|+|.. ..++++++.|+.+.|||+|.+ ........++|+..+.|+
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h-~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~  278 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLH-EDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCV  278 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccc-hhhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEE
Confidence            999999854322    23445678999999999999976 567999999999999999973 333345567899999999


Q ss_pred             EeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCC
Q 036510          156 SWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG  235 (288)
Q Consensus       156 ~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~  235 (288)
                      .|+|...             ..|+|||.|++|+|||+|+-   .+.++++.+|.+.|..|.|||+.   .+.|||.+.|+
T Consensus       279 ~fnp~~~-------------~ilAT~S~D~tV~LwDlRnL---~~~lh~~e~H~dev~~V~WSPh~---etvLASSg~D~  339 (422)
T KOG0264|consen  279 AFNPFNE-------------FILATGSADKTVALWDLRNL---NKPLHTFEGHEDEVFQVEWSPHN---ETVLASSGTDR  339 (422)
T ss_pred             EeCCCCC-------------ceEEeccCCCcEEEeechhc---ccCceeccCCCcceEEEEeCCCC---CceeEecccCC
Confidence            9999873             67999999999999999873   24678899999999999999985   57899999999


Q ss_pred             cEEEEEeecCCCc----------ccceEee-ccccCeEEEEeecCCC-EEEEEeCCCcEEEeEcC
Q 036510          236 KVIIWTVAREGDQ----------WEGKVLH-DFKTPVYRVSWSLTGN-ILAVADGNNNVTLWEEA  288 (288)
Q Consensus       236 ~i~iw~~~~~~~~----------~~~~~~~-~~~~~i~~~~~spdg~-~l~s~~~d~~v~~w~~~  288 (288)
                      .+.+||+...++.          .+...+| +|...|....|+|... .|+|++.|++++||+++
T Consensus       340 rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  340 RLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             cEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            9999999865321          1111222 5667899999999875 58888999999999964

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2.5e-34  Score=243.05  Aligned_cols=250  Identities=19%  Similarity=0.288  Sum_probs=201.5

Q ss_pred             cccccccceEEEEEcC-CCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510            6 IETGHEDTVHDVAMDY-YGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW   84 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~-~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw   84 (288)
                      ..+||++.|+++.|.| .+.+|+|++.|+.|+||++.. .+.+++++.||..+|.+++|+..  |..|+|+|.|+++++|
T Consensus       209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~-~~~~lrtf~gH~k~Vrd~~~s~~--g~~fLS~sfD~~lKlw  285 (503)
T KOG0282|consen  209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-DRRCLRTFKGHRKPVRDASFNNC--GTSFLSASFDRFLKLW  285 (503)
T ss_pred             eccCCccccchhhhccceeeEEEecCCCceEEEEEEec-Ccceehhhhcchhhhhhhhcccc--CCeeeeeecceeeeee
Confidence            4569999999999999 799999999999999999975 56889999999999999999864  8999999999999999


Q ss_pred             ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510           85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG  164 (288)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~  164 (288)
                      |.+++.+   ...+. -...++|+.|+|++ ...+++|+.|+.|+.||+|.+.-   ++.+..|-..|..|.|-+++   
T Consensus       286 DtETG~~---~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kv---vqeYd~hLg~i~~i~F~~~g---  354 (503)
T KOG0282|consen  286 DTETGQV---LSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKV---VQEYDRHLGAILDITFVDEG---  354 (503)
T ss_pred             ccccceE---EEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHH---HHHHHhhhhheeeeEEccCC---
Confidence            9998863   22332 24578999999997 57788999999999999998642   22334567789999998887   


Q ss_pred             ceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510          165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR  244 (288)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~  244 (288)
                                 .++++.+.|++++||+.+.+. .++.+.....|+  ..++..+|+.    ..+++-+.|+.|.++.+..
T Consensus       355 -----------~rFissSDdks~riWe~~~~v-~ik~i~~~~~hs--mP~~~~~P~~----~~~~aQs~dN~i~ifs~~~  416 (503)
T KOG0282|consen  355 -----------RRFISSSDDKSVRIWENRIPV-PIKNIADPEMHT--MPCLTLHPNG----KWFAAQSMDNYIAIFSTVP  416 (503)
T ss_pred             -----------ceEeeeccCccEEEEEcCCCc-cchhhcchhhcc--CcceecCCCC----CeehhhccCceEEEEeccc
Confidence                       789999999999999987652 223333334455  6889999984    6899999999999998765


Q ss_pred             CCCcccceEeeccc--cCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          245 EGDQWEGKVLHDFK--TPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       245 ~~~~~~~~~~~~~~--~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      +......+.+.+|.  +.-..|.|||||.+|++|++||.+.+||.
T Consensus       417 ~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdw  461 (503)
T KOG0282|consen  417 PFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDW  461 (503)
T ss_pred             ccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeec
Confidence            43222223344443  34567999999999999999999999983

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-32  Score=213.84  Aligned_cols=243  Identities=19%  Similarity=0.281  Sum_probs=199.7

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      ++..|+++|..+.|+-||+|.++++.|++|+||+..  ++.+++++.+|...|..++-+.+  +..|++|+.|+.+.+||
T Consensus        12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~--rg~liktYsghG~EVlD~~~s~D--nskf~s~GgDk~v~vwD   87 (307)
T KOG0316|consen   12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPL--RGALIKTYSGHGHEVLDAALSSD--NSKFASCGGDKAVQVWD   87 (307)
T ss_pred             eecccccceEEEEEccCCCEEEEcCCCceEEeeccc--ccceeeeecCCCceeeecccccc--ccccccCCCCceEEEEE
Confidence            456899999999999999999999999999999874  45789999999999999987754  78999999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      +.++.   ..+.+.+|...|+.++|+.+  ..++++|+.|.++++||-|... ..+.++.......|.+|..+.      
T Consensus        88 V~TGk---v~Rr~rgH~aqVNtV~fNee--sSVv~SgsfD~s~r~wDCRS~s-~ePiQildea~D~V~Si~v~~------  155 (307)
T KOG0316|consen   88 VNTGK---VDRRFRGHLAQVNTVRFNEE--SSVVASGSFDSSVRLWDCRSRS-FEPIQILDEAKDGVSSIDVAE------  155 (307)
T ss_pred             cccCe---eeeecccccceeeEEEecCc--ceEEEeccccceeEEEEcccCC-CCccchhhhhcCceeEEEecc------
Confidence            98876   45668899999999999976  5689999999999999998653 334455555667888887653      


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE  245 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~  245 (288)
                                +.+++||.||+++.||++.|.    +....-+  ++|++++|++++    +..++++.|+++++-|-+..
T Consensus       156 ----------heIvaGS~DGtvRtydiR~G~----l~sDy~g--~pit~vs~s~d~----nc~La~~l~stlrLlDk~tG  215 (307)
T KOG0316|consen  156 ----------HEIVAGSVDGTVRTYDIRKGT----LSSDYFG--HPITSVSFSKDG----NCSLASSLDSTLRLLDKETG  215 (307)
T ss_pred             ----------cEEEeeccCCcEEEEEeecce----eehhhcC--CcceeEEecCCC----CEEEEeeccceeeecccchh
Confidence                      569999999999999999873    2222333  459999999984    78889999999999986543


Q ss_pred             CCcccceEeeccccCe--EEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          246 GDQWEGKVLHDFKTPV--YRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       246 ~~~~~~~~~~~~~~~i--~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      +   .....++|++.-  ..++++.....+++||+||.|.+||+
T Consensus       216 k---lL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdL  256 (307)
T KOG0316|consen  216 K---LLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDL  256 (307)
T ss_pred             H---HHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEe
Confidence            2   112345666544  45788888999999999999999995

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=8.7e-32  Score=257.87  Aligned_cols=249  Identities=21%  Similarity=0.305  Sum_probs=195.0

Q ss_pred             cccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCC--Cc----eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcE
Q 036510            8 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNN--TS----QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTV   81 (288)
Q Consensus         8 ~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~--~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v   81 (288)
                      .+|...|.+++|+|+|++|++|+.|++|+||+....  ..    ..+..+. +...+.+++|+++ .+.+|++++.|++|
T Consensus       480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~-~~~~las~~~Dg~v  557 (793)
T PLN00181        480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSY-IKSQVASSNFEGVV  557 (793)
T ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccC-CCCEEEEEeCCCeE
Confidence            358999999999999999999999999999997421  00    1223333 3467899999764 47899999999999


Q ss_pred             EEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCC
Q 036510           82 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPST  161 (288)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~  161 (288)
                      ++||+.++.   ....+.+|...|++++|+|.+ +.+|++|+.|++|++||++.+.....   ... ...+.++.|.+..
T Consensus       558 ~lWd~~~~~---~~~~~~~H~~~V~~l~~~p~~-~~~L~Sgs~Dg~v~iWd~~~~~~~~~---~~~-~~~v~~v~~~~~~  629 (793)
T PLN00181        558 QVWDVARSQ---LVTEMKEHEKRVWSIDYSSAD-PTLLASGSDDGSVKLWSINQGVSIGT---IKT-KANICCVQFPSES  629 (793)
T ss_pred             EEEECCCCe---EEEEecCCCCCEEEEEEcCCC-CCEEEEEcCCCEEEEEECCCCcEEEE---Eec-CCCeEEEEEeCCC
Confidence            999987654   345677899999999999853 56899999999999999986543322   222 3568899996543


Q ss_pred             CCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEE
Q 036510          162 APGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT  241 (288)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~  241 (288)
                                   +..|++|+.|+.|++||++...   ..+..+.+|...|.++.|.+     +.+|++++.|++|++||
T Consensus       630 -------------g~~latgs~dg~I~iwD~~~~~---~~~~~~~~h~~~V~~v~f~~-----~~~lvs~s~D~~ikiWd  688 (793)
T PLN00181        630 -------------GRSLAFGSADHKVYYYDLRNPK---LPLCTMIGHSKTVSYVRFVD-----SSTLVSSSTDNTLKLWD  688 (793)
T ss_pred             -------------CCEEEEEeCCCeEEEEECCCCC---ccceEecCCCCCEEEEEEeC-----CCEEEEEECCCEEEEEe
Confidence                         2789999999999999997642   12345678999999999974     35899999999999999


Q ss_pred             eecCCC---cccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          242 VAREGD---QWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       242 ~~~~~~---~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      +.....   ......+.+|...+..++|+|+|++|++|+.|++|+||+.
T Consensus       689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~  737 (793)
T PLN00181        689 LSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHK  737 (793)
T ss_pred             CCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEEC
Confidence            874311   0112344567788999999999999999999999999984

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.3e-32  Score=240.85  Aligned_cols=246  Identities=21%  Similarity=0.375  Sum_probs=197.0

Q ss_pred             cccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecC
Q 036510            8 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEG   87 (288)
Q Consensus         8 ~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~   87 (288)
                      .||...+.+++.+|||+++|+|+.|+.|+|||..  ++-|+.++..|+..|+.+.|...  ++.++|.|.||+|+.||+.
T Consensus       347 QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~--SgfC~vTFteHts~Vt~v~f~~~--g~~llssSLDGtVRAwDlk  422 (893)
T KOG0291|consen  347 QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ--SGFCFVTFTEHTSGVTAVQFTAR--GNVLLSSSLDGTVRAWDLK  422 (893)
T ss_pred             cccccceeeEEECCCCcEEEeccCCCcEEEEecc--CceEEEEeccCCCceEEEEEEec--CCEEEEeecCCeEEeeeec
Confidence            3899999999999999999999999999999984  45799999999999999999864  8999999999999999986


Q ss_pred             CCCceEEeEEeec-CCCceeEEEeccCCCCeEEEEEeCCC-cEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           88 NSNEWIKDHVFED-HKSSVNSIDWAPHELGLCLACGSSDG-NISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        88 ~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~~l~sg~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      .-..   .+++.. ..-...|++..|.  +.++.+|+.|. .|.+|++++++   ...++.+|.++|.++.|+|.+    
T Consensus       423 RYrN---fRTft~P~p~QfscvavD~s--GelV~AG~~d~F~IfvWS~qTGq---llDiLsGHEgPVs~l~f~~~~----  490 (893)
T KOG0291|consen  423 RYRN---FRTFTSPEPIQFSCVAVDPS--GELVCAGAQDSFEIFVWSVQTGQ---LLDILSGHEGPVSGLSFSPDG----  490 (893)
T ss_pred             ccce---eeeecCCCceeeeEEEEcCC--CCEEEeeccceEEEEEEEeecCe---eeehhcCCCCcceeeEEcccc----
Confidence            5442   334432 2224557776665  78888888887 79999998874   345678999999999999997    


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE  245 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~  245 (288)
                                +.|+|+|+|++||+||+.......+   ++ .+..-|.+|.|+|++    ..|+.+..||.|.+||+...
T Consensus       491 ----------~~LaS~SWDkTVRiW~if~s~~~vE---tl-~i~sdvl~vsfrPdG----~elaVaTldgqItf~d~~~~  552 (893)
T KOG0291|consen  491 ----------SLLASGSWDKTVRIWDIFSSSGTVE---TL-EIRSDVLAVSFRPDG----KELAVATLDGQITFFDIKEA  552 (893)
T ss_pred             ----------CeEEeccccceEEEEEeeccCceee---eE-eeccceeEEEEcCCC----CeEEEEEecceEEEEEhhhc
Confidence                      7899999999999999976421112   22 244558999999985    67999999999999999865


Q ss_pred             CCcc-------------cc-eEeecc---ccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          246 GDQW-------------EG-KVLHDF---KTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       246 ~~~~-------------~~-~~~~~~---~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      .+..             +. ....+.   .++.+.++||+||..|++|+..+.|++|++
T Consensus       553 ~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v  611 (893)
T KOG0291|consen  553 VQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDV  611 (893)
T ss_pred             eeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEEC
Confidence            3210             00 011111   246899999999999999999999999985

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.2e-32  Score=239.11  Aligned_cols=241  Identities=23%  Similarity=0.392  Sum_probs=200.7

Q ss_pred             ccceEEEEEcCCCCEEEEeeCC-CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC
Q 036510           11 EDTVHDVAMDYYGKRLATASSD-YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS   89 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d-~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~   89 (288)
                      +..|..++|+..|.+||-||.- |-+-+|++..+  ..+...+||...+++++++||  |+++++|+.||.|||||...+
T Consensus       307 ~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE--sYVlKQQgH~~~i~~l~YSpD--gq~iaTG~eDgKVKvWn~~Sg  382 (893)
T KOG0291|consen  307 DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE--SYVLKQQGHSDRITSLAYSPD--GQLIATGAEDGKVKVWNTQSG  382 (893)
T ss_pred             cceeeEEEecccCCEEEEcCCccceEEEEEeecc--ceeeeccccccceeeEEECCC--CcEEEeccCCCcEEEEeccCc
Confidence            4678889999999999987754 78899999655  446677899999999999975  999999999999999999877


Q ss_pred             CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecc
Q 036510           90 NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS  169 (288)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~  169 (288)
                      .   +..++..|...|+.+.|+..  +..+++.+.||+++.||+.+..++..++  ...+.+..+++-.|.+        
T Consensus       383 f---C~vTFteHts~Vt~v~f~~~--g~~llssSLDGtVRAwDlkRYrNfRTft--~P~p~QfscvavD~sG--------  447 (893)
T KOG0291|consen  383 F---CFVTFTEHTSGVTAVQFTAR--GNVLLSSSLDGTVRAWDLKRYRNFRTFT--SPEPIQFSCVAVDPSG--------  447 (893)
T ss_pred             e---EEEEeccCCCceEEEEEEec--CCEEEEeecCCeEEeeeecccceeeeec--CCCceeeeEEEEcCCC--------
Confidence            6   56789999999999999987  7789999999999999998765543322  2345567788877776        


Q ss_pred             cccCCCceeEEeecCCc-EEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCc
Q 036510          170 GFLDPVQKLCSGGCDNT-VKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ  248 (288)
Q Consensus       170 ~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~  248 (288)
                            .+++.|+.|.. |.+|++.+|    +.+..+.||.++|.+++|+|++    +.|||||+|++||+||+-.... 
T Consensus       448 ------elV~AG~~d~F~IfvWS~qTG----qllDiLsGHEgPVs~l~f~~~~----~~LaS~SWDkTVRiW~if~s~~-  512 (893)
T KOG0291|consen  448 ------ELVCAGAQDSFEIFVWSVQTG----QLLDILSGHEGPVSGLSFSPDG----SLLASGSWDKTVRIWDIFSSSG-  512 (893)
T ss_pred             ------CEEEeeccceEEEEEEEeecC----eeeehhcCCCCcceeeEEcccc----CeEEeccccceEEEEEeeccCc-
Confidence                  67888888875 999999998    5677899999999999999984    7899999999999999975421 


Q ss_pred             ccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          249 WEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       249 ~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                       ..++ -++...++.++|+|||+.||++..||.|.+||.
T Consensus       513 -~vEt-l~i~sdvl~vsfrPdG~elaVaTldgqItf~d~  549 (893)
T KOG0291|consen  513 -TVET-LEIRSDVLAVSFRPDGKELAVATLDGQITFFDI  549 (893)
T ss_pred             -eeee-EeeccceeEEEEcCCCCeEEEEEecceEEEEEh
Confidence             1122 233456899999999999999999999999994

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=4e-32  Score=223.69  Aligned_cols=253  Identities=23%  Similarity=0.358  Sum_probs=200.2

Q ss_pred             CccccccccceEEEEEc-CC--CCEEEEeeCCCcEEEEEeCCCC--ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC
Q 036510            4 QKIETGHEDTVHDVAMD-YY--GKRLATASSDYSIKIIGVGNNT--SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD   78 (288)
Q Consensus         4 ~~~~~~h~~~v~~~~~s-~~--g~~l~s~~~d~~i~lwd~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d   78 (288)
                      .++..||.++|.++.+- ++  ...++++|.|.++++|.++.+.  .+.+..-.||...|-++.-..  +|..++|||.|
T Consensus       137 ~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~--sgtr~~SgS~D  214 (423)
T KOG0313|consen  137 IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS--SGTRFCSGSWD  214 (423)
T ss_pred             EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecC--CCCeEEeeccc
Confidence            34677999999987753 32  3469999999999999886433  223344459999999999764  48999999999


Q ss_pred             CcEEEeecCCCC----------------------ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCC
Q 036510           79 GTVIIWKEGNSN----------------------EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARAD  136 (288)
Q Consensus        79 ~~v~iwd~~~~~----------------------~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~  136 (288)
                      .+++||+.....                      +-.++.++.+|..+|.++-|++.   ..+.++++|-+|+.||+..+
T Consensus       215 ~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~---~v~yS~SwDHTIk~WDletg  291 (423)
T KOG0313|consen  215 TMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA---TVIYSVSWDHTIKVWDLETG  291 (423)
T ss_pred             ceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC---CceEeecccceEEEEEeecc
Confidence            999999831100                      01123457899999999999984   45789999999999999887


Q ss_pred             CCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEE
Q 036510          137 GGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVA  216 (288)
Q Consensus       137 ~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~  216 (288)
                      +.....    ..+....+++.+|..              .+|++|+.|+.|++||.+++.-. -..+++.+|.++|.+|.
T Consensus       292 ~~~~~~----~~~ksl~~i~~~~~~--------------~Ll~~gssdr~irl~DPR~~~gs-~v~~s~~gH~nwVssvk  352 (423)
T KOG0313|consen  292 GLKSTL----TTNKSLNCISYSPLS--------------KLLASGSSDRHIRLWDPRTGDGS-VVSQSLIGHKNWVSSVK  352 (423)
T ss_pred             cceeee----ecCcceeEeeccccc--------------ceeeecCCCCceeecCCCCCCCc-eeEEeeecchhhhhhee
Confidence            643322    245678899998866              78999999999999999987433 23567899999999999


Q ss_pred             ecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          217 WAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       217 ~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      |+|..   ..+|++||.|+++++||++....+  ...++.|..+|.++.|+ +|..|++|+.|++|++++
T Consensus       353 wsp~~---~~~~~S~S~D~t~klWDvRS~k~p--lydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~  416 (423)
T KOG0313|consen  353 WSPTN---EFQLVSGSYDNTVKLWDVRSTKAP--LYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFK  416 (423)
T ss_pred             cCCCC---ceEEEEEecCCeEEEEEeccCCCc--ceeeccCCceEEEEecc-CCceEEeccCcceEEEec
Confidence            99975   578999999999999999976432  34567888999999995 567889999999999986

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=4.5e-31  Score=252.94  Aligned_cols=249  Identities=20%  Similarity=0.299  Sum_probs=196.1

Q ss_pred             cccceEEEEEcC-CCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCC
Q 036510           10 HEDTVHDVAMDY-YGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN   88 (288)
Q Consensus        10 h~~~v~~~~~s~-~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~   88 (288)
                      +...|.+++|++ ++++|++++.|++|++||+..  .+.+..+.+|.+.|++++|++. ++.+|+||+.|++|++||+.+
T Consensus       531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~--~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~v~iWd~~~  607 (793)
T PLN00181        531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR--SQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGSVKLWSINQ  607 (793)
T ss_pred             ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC--CeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCEEEEEECCC
Confidence            346788999987 478999999999999999854  3667888999999999999753 478999999999999999976


Q ss_pred             CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceec
Q 036510           89 SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG  168 (288)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~  168 (288)
                      +.   ....+..+ ..|.++.|++.. +.++++|+.|+.|++||++....  ......+|...|.++.|.+ +       
T Consensus       608 ~~---~~~~~~~~-~~v~~v~~~~~~-g~~latgs~dg~I~iwD~~~~~~--~~~~~~~h~~~V~~v~f~~-~-------  672 (793)
T PLN00181        608 GV---SIGTIKTK-ANICCVQFPSES-GRSLAFGSADHKVYYYDLRNPKL--PLCTMIGHSKTVSYVRFVD-S-------  672 (793)
T ss_pred             Cc---EEEEEecC-CCeEEEEEeCCC-CCEEEEEeCCCeEEEEECCCCCc--cceEecCCCCCEEEEEEeC-C-------
Confidence            54   23344433 579999997643 67899999999999999986532  1234468999999999963 3       


Q ss_pred             ccccCCCceeEEeecCCcEEEEEEeCCce--eeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCC
Q 036510          169 SGFLDPVQKLCSGGCDNTVKVWKLYNGIW--KMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG  246 (288)
Q Consensus       169 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~  246 (288)
                             ..|++++.|++|+|||+..+..  ..+.+..+.+|...+.++.|+|++    .+||+|+.|++|++|+.....
T Consensus       673 -------~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~----~~lasgs~D~~v~iw~~~~~~  741 (793)
T PLN00181        673 -------STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSD----GYIATGSETNEVFVYHKAFPM  741 (793)
T ss_pred             -------CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCC----CEEEEEeCCCEEEEEECCCCC
Confidence                   5799999999999999875311  113456788999999999999974    689999999999999975321


Q ss_pred             Ccc----------cceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          247 DQW----------EGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       247 ~~~----------~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ...          .......+...|.+++|+|+|++|++|+.||+|+||++
T Consensus       742 ~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        742 PVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             ceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            100          00111233456999999999999999999999999996

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1.9e-33  Score=220.27  Aligned_cols=253  Identities=23%  Similarity=0.349  Sum_probs=199.2

Q ss_pred             CCCccccccccceEEEEEcC---CCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC
Q 036510            2 PPQKIETGHEDTVHDVAMDY---YGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD   78 (288)
Q Consensus         2 ~~~~~~~~h~~~v~~~~~s~---~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d   78 (288)
                      .-+..+.||+.+|..+.|||   +|-.|.|++.|+.-.|-.  +.++..+.++.||++.||+.+...  +...-+|+++|
T Consensus         5 ~~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~--g~tgdwigtfeghkgavw~~~l~~--na~~aasaaad   80 (334)
T KOG0278|consen    5 QTPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRN--GDTGDWIGTFEGHKGAVWSATLNK--NATRAASAAAD   80 (334)
T ss_pred             cCceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhcc--CCCCCcEEeeeccCcceeeeecCc--hhhhhhhhccc
Confidence            34567889999999999985   898999999999887754  345678999999999999988754  35677899999


Q ss_pred             CcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeC
Q 036510           79 GTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWA  158 (288)
Q Consensus        79 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~  158 (288)
                      -+.++||.-++.+   .+.+ .|+.-|.+++|+.|  ..+|++|+.++.+|+||+.+...  ++....+|+..|..+-|.
T Consensus        81 ftakvw~a~tgde---lhsf-~hkhivk~~af~~d--s~~lltgg~ekllrvfdln~p~A--pp~E~~ghtg~Ir~v~wc  152 (334)
T KOG0278|consen   81 FTAKVWDAVTGDE---LHSF-EHKHIVKAVAFSQD--SNYLLTGGQEKLLRVFDLNRPKA--PPKEISGHTGGIRTVLWC  152 (334)
T ss_pred             chhhhhhhhhhhh---hhhh-hhhheeeeEEeccc--chhhhccchHHHhhhhhccCCCC--CchhhcCCCCcceeEEEe
Confidence            9999999877763   3444 48888999999987  66799999999999999976543  334456899999999998


Q ss_pred             CCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeee------------------------------------ee
Q 036510          159 PSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMD------------------------------------CF  202 (288)
Q Consensus       159 p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~------------------------------------~~  202 (288)
                      ...              +.++|++.|++|||||.+++...+.                                    .+
T Consensus       153 ~eD--------------~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~l  218 (334)
T KOG0278|consen  153 HED--------------KCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLL  218 (334)
T ss_pred             ccC--------------ceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccce
Confidence            776              5678889999999999988742111                                    00


Q ss_pred             eccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcE
Q 036510          203 PALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNV  282 (288)
Q Consensus       203 ~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v  282 (288)
                      +..+. ...|.+.+++|+.    ..+|+|+.|..++-||.....+.  ....++|.+||.++.|+|||...|+||.||+|
T Consensus       219 Ks~k~-P~nV~SASL~P~k----~~fVaGged~~~~kfDy~TgeEi--~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTi  291 (334)
T KOG0278|consen  219 KSYKM-PCNVESASLHPKK----EFFVAGGEDFKVYKFDYNTGEEI--GSYNKGHFGPVHCVRFSPDGELYASGSEDGTI  291 (334)
T ss_pred             eeccC-ccccccccccCCC----ceEEecCcceEEEEEeccCCcee--eecccCCCCceEEEEECCCCceeeccCCCceE
Confidence            00111 1135566667764    57999999999999998765322  22247888999999999999999999999999


Q ss_pred             EEeEc
Q 036510          283 TLWEE  287 (288)
Q Consensus       283 ~~w~~  287 (288)
                      |||.+
T Consensus       292 rlWQt  296 (334)
T KOG0278|consen  292 RLWQT  296 (334)
T ss_pred             EEEEe
Confidence            99985

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.4e-30  Score=218.09  Aligned_cols=245  Identities=30%  Similarity=0.456  Sum_probs=200.0

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      .+.+|.+.|.+++|+|++++|++++.|+.+++|++...  +....+.+|...+..+.|.++  +++|++++.|+.+++|+
T Consensus         4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~--~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~i~i~~   79 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG--ELLRTLKGHTGPVRDVAASAD--GTYLASGSSDKTIRLWD   79 (289)
T ss_pred             HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC--CcEEEEecCCcceeEEEECCC--CCEEEEEcCCCeEEEEE
Confidence            35599999999999999999999999999999998643  356778889999999999864  68999999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      +....   ....+..|...+.++.|+|+  +.++++++.|+.|.+|+++....   ......|...+.++.|+|++    
T Consensus        80 ~~~~~---~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~----  147 (289)
T cd00200          80 LETGE---CVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKC---LTTLRGHTDWVNSVAFSPDG----  147 (289)
T ss_pred             cCccc---ceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEE---EEEeccCCCcEEEEEEcCcC----
Confidence            97643   33456678889999999997  56778787899999999975432   23344788889999999975    


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE  245 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~  245 (288)
                                .++++++.|+.|++||++.+    +....+..|...|.++.|+|+.    ..+++++.|+.|++||++..
T Consensus       148 ----------~~l~~~~~~~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~~~~i~i~d~~~~  209 (289)
T cd00200         148 ----------TFVASSSQDGTIKLWDLRTG----KCVATLTGHTGEVNSVAFSPDG----EKLLSSSSDGTIKLWDLSTG  209 (289)
T ss_pred             ----------CEEEEEcCCCcEEEEEcccc----ccceeEecCccccceEEECCCc----CEEEEecCCCcEEEEECCCC
Confidence                      67777777999999999765    3344566788899999999974    57889999999999998753


Q ss_pred             CCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          246 GDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       246 ~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      .   ....+..+..++.+++|+|++.++++++.|+.|++|+.
T Consensus       210 ~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~  248 (289)
T cd00200         210 K---CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDL  248 (289)
T ss_pred             c---eecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEc
Confidence            2   11223355678999999999999999988999999995

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.7e-32  Score=225.52  Aligned_cols=261  Identities=24%  Similarity=0.345  Sum_probs=195.6

Q ss_pred             ccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCC-CCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510            5 KIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGN-NTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVII   83 (288)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i   83 (288)
                      +++..|++.|.-++||++|+||||++.|.+.-+|++.. ...+.++++.+|..+|-.+.|||+  .++|++|+.|..+++
T Consensus       218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPD--dryLlaCg~~e~~~l  295 (519)
T KOG0293|consen  218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPD--DRYLLACGFDEVLSL  295 (519)
T ss_pred             hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCC--CCeEEecCchHheee
Confidence            46778999999999999999999999999999998743 335678999999999999999976  799999999999999


Q ss_pred             eecCCCCceEEeEEee-cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCC--CCeeeEEeeccCCCCeeEEEeCCC
Q 036510           84 WKEGNSNEWIKDHVFE-DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARAD--GGWDTSRIDQAHPVGVTSVSWAPS  160 (288)
Q Consensus        84 wd~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~v~~i~~~p~  160 (288)
                      ||+.++..   .+.++ +|...+.+++|.||  +..+++|+.|+++..||+..+  ..|.-.+     ...|.+++..++
T Consensus       296 wDv~tgd~---~~~y~~~~~~S~~sc~W~pD--g~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr-----~~~v~dlait~D  365 (519)
T KOG0293|consen  296 WDVDTGDL---RHLYPSGLGFSVSSCAWCPD--GFRFVTGSPDRTIIMWDLDGNILGNWEGVR-----DPKVHDLAITYD  365 (519)
T ss_pred             ccCCcchh---hhhcccCcCCCcceeEEccC--CceeEecCCCCcEEEecCCcchhhcccccc-----cceeEEEEEcCC
Confidence            99987763   33332 35678999999999  667999999999999998632  2222111     122455555555


Q ss_pred             CCCCce---------------------------ecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcc--
Q 036510          161 TAPGAL---------------------------VGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDW--  211 (288)
Q Consensus       161 ~~~~~~---------------------------~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~--  211 (288)
                      +..-..                           +..-.+.+++++.+.-.+..+.+||+.+.    +.+..+.||+..  
T Consensus       366 gk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~----~lv~kY~Ghkq~~f  441 (519)
T KOG0293|consen  366 GKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN----KLVRKYFGHKQGHF  441 (519)
T ss_pred             CcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchh----hHHHHhhcccccce
Confidence            431110                           11112345567777778889999999864    455566777653  


Q ss_pred             eEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCC-CEEEEEeCCCcEEEeEc
Q 036510          212 VRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTG-NILAVADGNNNVTLWEE  287 (288)
Q Consensus       212 V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg-~~l~s~~~d~~v~~w~~  287 (288)
                      |-.-+|--   ....+++|||.|+.|+||+....+   ....+.+|...|++|+|+|.. .+||+|+.||+||||..
T Consensus       442 iIrSCFgg---~~~~fiaSGSED~kvyIWhr~sgk---ll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~  512 (519)
T KOG0293|consen  442 IIRSCFGG---GNDKFIASGSEDSKVYIWHRISGK---LLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP  512 (519)
T ss_pred             EEEeccCC---CCcceEEecCCCceEEEEEccCCc---eeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence            22225533   235789999999999999976542   235567888899999999965 67999999999999974

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.4e-30  Score=204.08  Aligned_cols=232  Identities=20%  Similarity=0.318  Sum_probs=187.0

Q ss_pred             CCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCC
Q 036510           23 GKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHK  102 (288)
Q Consensus        23 g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~  102 (288)
                      .-+|+|+|+|.+||+|..  .++.+.+++.-..+.|+.+...++  +..|+.++ ...||+||+.+.+.. ++.++.+|.
T Consensus        10 ~viLvsA~YDhTIRfWqa--~tG~C~rTiqh~dsqVNrLeiTpd--k~~LAaa~-~qhvRlyD~~S~np~-Pv~t~e~h~   83 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQA--LTGICSRTIQHPDSQVNRLEITPD--KKDLAAAG-NQHVRLYDLNSNNPN-PVATFEGHT   83 (311)
T ss_pred             ceEEEeccCcceeeeeeh--hcCeEEEEEecCccceeeEEEcCC--cchhhhcc-CCeeEEEEccCCCCC-ceeEEeccC
Confidence            358999999999999986  356889998877888999999764  56666655 488999999876643 456789999


Q ss_pred             CceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEee
Q 036510          103 SSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGG  182 (288)
Q Consensus       103 ~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~  182 (288)
                      +.|+++.|+-+  ++-+++|+.||+++|||+|.... +  + .-.|+.+|.++...|+.              ..|++|.
T Consensus        84 kNVtaVgF~~d--grWMyTgseDgt~kIWdlR~~~~-q--R-~~~~~spVn~vvlhpnQ--------------teLis~d  143 (311)
T KOG0315|consen   84 KNVTAVGFQCD--GRWMYTGSEDGTVKIWDLRSLSC-Q--R-NYQHNSPVNTVVLHPNQ--------------TELISGD  143 (311)
T ss_pred             CceEEEEEeec--CeEEEecCCCceEEEEeccCccc-c--h-hccCCCCcceEEecCCc--------------ceEEeec
Confidence            99999999987  78899999999999999997432 1  1 22477899999999987              5689999


Q ss_pred             cCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEee---cccc
Q 036510          183 CDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLH---DFKT  259 (288)
Q Consensus       183 ~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~---~~~~  259 (288)
                      .++.|++||+.+.....+++++   -..+|.++...|+    +++++++..-|++.+|++-......+..+++   -|.+
T Consensus       144 qsg~irvWDl~~~~c~~~liPe---~~~~i~sl~v~~d----gsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~  216 (311)
T KOG0315|consen  144 QSGNIRVWDLGENSCTHELIPE---DDTSIQSLTVMPD----GSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNG  216 (311)
T ss_pred             CCCcEEEEEccCCccccccCCC---CCcceeeEEEcCC----CcEEEEecCCccEEEEEccCCCccccceEhhheecccc
Confidence            9999999999886543333332   2356899999998    4899999999999999987543333334443   3557


Q ss_pred             CeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          260 PVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       260 ~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      .+.++-+|||+++||++|+|.+|+||+.
T Consensus       217 ~il~C~lSPd~k~lat~ssdktv~iwn~  244 (311)
T KOG0315|consen  217 HILRCLLSPDVKYLATCSSDKTVKIWNT  244 (311)
T ss_pred             eEEEEEECCCCcEEEeecCCceEEEEec
Confidence            8999999999999999999999999985

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.4e-31  Score=230.30  Aligned_cols=247  Identities=18%  Similarity=0.227  Sum_probs=213.5

Q ss_pred             ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510            7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE   86 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~   86 (288)
                      +..|.+.|-++.|.|....++++=+.|.|.||+.+.+  ..+.++.-..-+|.+..|-.-  -+.+++||+|..|+|++.
T Consensus         9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetq--tmVksfeV~~~PvRa~kfiaR--knWiv~GsDD~~IrVfny   84 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ--TMVKSFEVSEVPVRAAKFIAR--KNWIVTGSDDMQIRVFNY   84 (794)
T ss_pred             hhccCCceeeeecCCCCceEEEeeecCeeEEEecccc--eeeeeeeecccchhhheeeec--cceEEEecCCceEEEEec
Confidence            3458999999999999999999999999999998644  557777777888999998754  579999999999999998


Q ss_pred             CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCce
Q 036510           87 GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGAL  166 (288)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~  166 (288)
                      .+..   +++++..|.+-|.|++.||.  .-++++++.|-+|++||....  |...+..++|.--|.++.|+|..+    
T Consensus        85 nt~e---kV~~FeAH~DyIR~iavHPt--~P~vLtsSDDm~iKlW~we~~--wa~~qtfeGH~HyVMqv~fnPkD~----  153 (794)
T KOG0276|consen   85 NTGE---KVKTFEAHSDYIRSIAVHPT--LPYVLTSSDDMTIKLWDWENE--WACEQTFEGHEHYVMQVAFNPKDP----  153 (794)
T ss_pred             ccce---eeEEeeccccceeeeeecCC--CCeEEecCCccEEEEeeccCc--eeeeeEEcCcceEEEEEEecCCCc----
Confidence            6654   78899999999999999997  346889999999999998753  666778889998999999999885    


Q ss_pred             ecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCC
Q 036510          167 VGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG  246 (288)
Q Consensus       167 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~  246 (288)
                               +.++|++-|++||+|.+...    .+..++.+|...|+||+|-|-+  +.-+|+||++|.+|+|||.+.+.
T Consensus       154 ---------ntFaS~sLDrTVKVWslgs~----~~nfTl~gHekGVN~Vdyy~~g--dkpylIsgaDD~tiKvWDyQtk~  218 (794)
T KOG0276|consen  154 ---------NTFASASLDRTVKVWSLGSP----HPNFTLEGHEKGVNCVDYYTGG--DKPYLISGADDLTIKVWDYQTKS  218 (794)
T ss_pred             ---------cceeeeeccccEEEEEcCCC----CCceeeeccccCcceEEeccCC--CcceEEecCCCceEEEeecchHH
Confidence                     78999999999999998765    3456789999999999999853  22389999999999999988642


Q ss_pred             CcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          247 DQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       247 ~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                         ..+++.+|...|..+.|+|.-.+|++||+||+||||.
T Consensus       219 ---CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWh  255 (794)
T KOG0276|consen  219 ---CVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWN  255 (794)
T ss_pred             ---HHHHhhcccccceEEEecCCCcEEEEecCCccEEEec
Confidence               2355678888999999999999999999999999996

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.2e-31  Score=234.12  Aligned_cols=252  Identities=23%  Similarity=0.321  Sum_probs=205.1

Q ss_pred             ccccccccceEEEEE-cCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510            5 KIETGHEDTVHDVAM-DYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVII   83 (288)
Q Consensus         5 ~~~~~h~~~v~~~~~-s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i   83 (288)
                      +.+-|..+.|.+.+| .|..++|+.+.+.+.+|+|+....   ....+.||+..|.++....  .|.+|+|||.|+++++
T Consensus       317 k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~---~c~ii~GH~e~vlSL~~~~--~g~llat~sKD~svil  391 (775)
T KOG0319|consen  317 KQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTS---YCQIIPGHTEAVLSLDVWS--SGDLLATGSKDKSVIL  391 (775)
T ss_pred             hhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCC---ceEEEeCchhheeeeeecc--cCcEEEEecCCceEEE
Confidence            445588899999996 577799999999999999987543   2347899999999999322  3789999999999999


Q ss_pred             eecCCC-CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCC--CCeeeEE----eeccCCCCeeEEE
Q 036510           84 WKEGNS-NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARAD--GGWDTSR----IDQAHPVGVTSVS  156 (288)
Q Consensus        84 wd~~~~-~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~--~~~~~~~----~~~~~~~~v~~i~  156 (288)
                      |.+.+. ....++....+|.+.|.+++++... ...+++++.|.+|++|+++..  .......    ....|...|.+++
T Consensus       392 Wr~~~~~~~~~~~a~~~gH~~svgava~~~~~-asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Va  470 (775)
T KOG0319|consen  392 WRLNNNCSKSLCVAQANGHTNSVGAVAGSKLG-ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVA  470 (775)
T ss_pred             EEecCCcchhhhhhhhcccccccceeeecccC-ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceE
Confidence            988332 1122334456899999999997653 446899999999999999762  1111111    2347999999999


Q ss_pred             eCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCc
Q 036510          157 WAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGK  236 (288)
Q Consensus       157 ~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~  236 (288)
                      .+|+.              .+++|||.|++.|||++...    .....+.||+-.|+||.|+|.    ++.++|+|.|.+
T Consensus       471 ia~nd--------------kLiAT~SqDktaKiW~le~~----~l~~vLsGH~RGvw~V~Fs~~----dq~laT~SgD~T  528 (775)
T KOG0319|consen  471 IAPND--------------KLIATGSQDKTAKIWDLEQL----RLLGVLSGHTRGVWCVSFSKN----DQLLATCSGDKT  528 (775)
T ss_pred             ecCCC--------------ceEEecccccceeeecccCc----eEEEEeeCCccceEEEEeccc----cceeEeccCCce
Confidence            99987              78999999999999999853    567789999999999999997    478999999999


Q ss_pred             EEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          237 VIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       237 i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ||||.++..   ...+.+.+|.+.|..+.|--+|++|+|+++||.++||++
T Consensus       529 vKIW~is~f---SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWni  576 (775)
T KOG0319|consen  529 VKIWSISTF---SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNI  576 (775)
T ss_pred             EEEEEeccc---eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEec
Confidence            999999852   234566788899999999999999999999999999985

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=5.5e-31  Score=211.18  Aligned_cols=246  Identities=21%  Similarity=0.302  Sum_probs=198.7

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      .+.||.++|..+.|.+|++.|+|+|.|++++.||..  ++++.+...+|..-|+.+.-+ .-...++.|++.|+++++||
T Consensus        85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~--tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D  161 (338)
T KOG0265|consen   85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE--TGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWD  161 (338)
T ss_pred             eeccccceeEeeeeccCCCEEEEecCCceEEEEecc--cceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEe
Confidence            345999999999999999999999999999999984  457888899999999988732 22345778999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      ++....   .+++ ..+.+++++.|.-.  +..+.+|+-|+.|++||+|++..   ..++.+|.+.|+.+..+|.+    
T Consensus       162 ~R~k~~---~~t~-~~kyqltAv~f~d~--s~qv~sggIdn~ikvWd~r~~d~---~~~lsGh~DtIt~lsls~~g----  228 (338)
T KOG0265|consen  162 IRKKEA---IKTF-ENKYQLTAVGFKDT--SDQVISGGIDNDIKVWDLRKNDG---LYTLSGHADTITGLSLSRYG----  228 (338)
T ss_pred             ecccch---hhcc-ccceeEEEEEeccc--ccceeeccccCceeeeccccCcc---eEEeecccCceeeEEeccCC----
Confidence            987542   2333 24568899999855  55689999999999999987654   35668999999999999987    


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCc----ceEEEEecCCCCCCCcEEEEEeCCCcEEEEE
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTD----WVRDVAWAPNLGLPKSTIASASEDGKVIIWT  241 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~----~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~  241 (288)
                                .++.+-+-|+++++||++.-.....++..+.+|..    -...++|+|++    +.+.+|+.|+.+.+||
T Consensus       229 ----------s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~----~~i~ags~dr~vyvwd  294 (338)
T KOG0265|consen  229 ----------SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNG----TKITAGSADRFVYVWD  294 (338)
T ss_pred             ----------CccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCC----CccccccccceEEEee
Confidence                      67889999999999999863223345566665543    23456999984    6799999999999999


Q ss_pred             eecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEE
Q 036510          242 VAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTL  284 (288)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~  284 (288)
                      .....   ....+-+|.+.|+.++|+|...+|.++++|++|.+
T Consensus       295 ~~~r~---~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  295 TTSRR---ILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             ccccc---EEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence            87532   22344577889999999999999999999999976

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.2e-31  Score=235.17  Aligned_cols=247  Identities=21%  Similarity=0.319  Sum_probs=200.9

Q ss_pred             ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510            7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE   86 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~   86 (288)
                      +..|+++|.++.|.|.+.+++|||.|.+|++|+...  .+++.+|.||.+-|..+.|.|.  -..++|+|+|.+|+||+.
T Consensus        47 FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~--rrclftL~GHlDYVRt~~FHhe--yPWIlSASDDQTIrIWNw  122 (1202)
T KOG0292|consen   47 FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT--RRCLFTLLGHLDYVRTVFFHHE--YPWILSASDDQTIRIWNW  122 (1202)
T ss_pred             hhccCCccceeeecCCCCeEEecCCccEEEEEeccc--ceehhhhccccceeEEeeccCC--CceEEEccCCCeEEEEec
Confidence            458999999999999999999999999999999853  4789999999999999999653  569999999999999999


Q ss_pred             CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecC-------CC---------C----------ee
Q 036510           87 GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA-------DG---------G----------WD  140 (288)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~-------~~---------~----------~~  140 (288)
                      .+.+   ++..+.+|..-|+|..|||.  ..++++++.|.+||+||+.-       ++         +          .-
T Consensus       123 qsr~---~iavltGHnHYVMcAqFhpt--EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaV  197 (1202)
T KOG0292|consen  123 QSRK---CIAVLTGHNHYVMCAQFHPT--EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAV  197 (1202)
T ss_pred             cCCc---eEEEEecCceEEEeeccCCc--cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCee
Confidence            8776   45678899999999999997  35799999999999999841       01         0          01


Q ss_pred             eEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCC-ceeeeeeeccccCCcceEEEEecC
Q 036510          141 TSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNG-IWKMDCFPALQMHTDWVRDVAWAP  219 (288)
Q Consensus       141 ~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~h~~~V~~v~~sp  219 (288)
                      ...++++|..+|.-++|.|.-              -+++||+.|+.||+|.+.+. .|+   +.+..||.+.|.++-|+|
T Consensus       198 VK~VLEGHDRGVNwaAfhpTl--------------pliVSG~DDRqVKlWrmnetKaWE---vDtcrgH~nnVssvlfhp  260 (1202)
T KOG0292|consen  198 VKHVLEGHDRGVNWAAFHPTL--------------PLIVSGADDRQVKLWRMNETKAWE---VDTCRGHYNNVSSVLFHP  260 (1202)
T ss_pred             eeeeecccccccceEEecCCc--------------ceEEecCCcceeeEEEecccccee---ehhhhcccCCcceEEecC
Confidence            123578999999999999976              46999999999999999653 333   446789999999999999


Q ss_pred             CCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          220 NLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       220 ~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      .    ..+|+|.|.|++|++||.++...   ...+.--...-+.++-+|..++||.| +|+-+-|++.
T Consensus       261 ~----q~lIlSnsEDksirVwDm~kRt~---v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkl  320 (1202)
T KOG0292|consen  261 H----QDLILSNSEDKSIRVWDMTKRTS---VQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKL  320 (1202)
T ss_pred             c----cceeEecCCCccEEEEecccccc---eeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEE
Confidence            5    36899999999999999986421   12211113456779999999999977 6666667763

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=7.3e-30  Score=213.81  Aligned_cols=244  Identities=31%  Similarity=0.520  Sum_probs=199.4

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      ...+|...+..+.|++++++|++++.|+.+++|++...  +.+..+.+|...+.++.|+++  +.++++++.|+.+++|+
T Consensus        46 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~--~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~  121 (289)
T cd00200          46 TLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG--ECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWD  121 (289)
T ss_pred             EEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc--cceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEE
Confidence            45578889999999999999999999999999998643  456778889999999999864  67888888899999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      +.+..   ....+..|...+.++.|+|+  +.++++++.|+.|++||++.....   .....|...+.++.|+|++    
T Consensus       122 ~~~~~---~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~---~~~~~~~~~i~~~~~~~~~----  189 (289)
T cd00200         122 VETGK---CLTTLRGHTDWVNSVAFSPD--GTFVASSSQDGTIKLWDLRTGKCV---ATLTGHTGEVNSVAFSPDG----  189 (289)
T ss_pred             CCCcE---EEEEeccCCCcEEEEEEcCc--CCEEEEEcCCCcEEEEEccccccc---eeEecCccccceEEECCCc----
Confidence            97543   34456678889999999997  567777877999999999765332   2334677789999999986    


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE  245 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~  245 (288)
                                +.+++++.|+.|++||+..+    +.+..+..|...|.++.|+|+    +.++++++.|+.|++|++...
T Consensus       190 ----------~~l~~~~~~~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~i~i~~~~~~  251 (289)
T cd00200         190 ----------EKLLSSSSDGTIKLWDLSTG----KCLGTLRGHENGVNSVAFSPD----GYLLASGSEDGTIRVWDLRTG  251 (289)
T ss_pred             ----------CEEEEecCCCcEEEEECCCC----ceecchhhcCCceEEEEEcCC----CcEEEEEcCCCcEEEEEcCCc
Confidence                      56888888999999999765    344556678889999999997    357888888999999998743


Q ss_pred             CCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          246 GDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       246 ~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      .   ....+..+...|.+++|+|++++|++++.|+.|++|+
T Consensus       252 ~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         252 E---CVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             e---eEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            2   1233445667899999999999999999999999996

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3.4e-30  Score=220.13  Aligned_cols=249  Identities=19%  Similarity=0.351  Sum_probs=200.3

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC----CcE
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD----GTV   81 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d----~~v   81 (288)
                      +.+.|.-+++-++++|.|-|++||...|+|||||......-+...+..-.++|..|+|+.+  +..++..++.    |.+
T Consensus        54 iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~d--s~RI~avGEGrerfg~~  131 (603)
T KOG0318|consen   54 IYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFD--SKRIAAVGEGRERFGHV  131 (603)
T ss_pred             eeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCC--CcEEEEEecCccceeEE
Confidence            5668988999899999999999999999999999875444445666777889999999865  7778777653    345


Q ss_pred             EEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCC
Q 036510           82 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPST  161 (288)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~  161 (288)
                      -+||..+.     +..+.+|...|++++|-|.+ ...+++|+.|+.+.+|.=.   .+.-......|...|.++.|+|++
T Consensus       132 F~~DSG~S-----vGei~GhSr~ins~~~KpsR-PfRi~T~sdDn~v~ffeGP---PFKFk~s~r~HskFV~~VRysPDG  202 (603)
T KOG0318|consen  132 FLWDSGNS-----VGEITGHSRRINSVDFKPSR-PFRIATGSDDNTVAFFEGP---PFKFKSSFREHSKFVNCVRYSPDG  202 (603)
T ss_pred             EEecCCCc-----cceeeccceeEeeeeccCCC-ceEEEeccCCCeEEEeeCC---CeeeeecccccccceeeEEECCCC
Confidence            67775432     34678999999999999975 6789999999999999532   221112345688899999999997


Q ss_pred             CCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccc---cCCcceEEEEecCCCCCCCcEEEEEeCCCcEE
Q 036510          162 APGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQ---MHTDWVRDVAWAPNLGLPKSTIASASEDGKVI  238 (288)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~  238 (288)
                                    .+++|.+.|+.|.|||=.+++    .+..+.   +|++.|.+++|+||+    ++|+|+|.|+++|
T Consensus       203 --------------~~Fat~gsDgki~iyDGktge----~vg~l~~~~aHkGsIfalsWsPDs----~~~~T~SaDkt~K  260 (603)
T KOG0318|consen  203 --------------SRFATAGSDGKIYIYDGKTGE----KVGELEDSDAHKGSIFALSWSPDS----TQFLTVSADKTIK  260 (603)
T ss_pred             --------------CeEEEecCCccEEEEcCCCcc----EEEEecCCCCccccEEEEEECCCC----ceEEEecCCceEE
Confidence                          789999999999999988873    344444   899999999999985    7899999999999


Q ss_pred             EEEeecCCC----------------------------------------cccceEeeccccCeEEEEeecCCCEEEEEeC
Q 036510          239 IWTVAREGD----------------------------------------QWEGKVLHDFKTPVYRVSWSLTGNILAVADG  278 (288)
Q Consensus       239 iw~~~~~~~----------------------------------------~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~  278 (288)
                      |||+....-                                        ......+++|.+.|++++-+|||++|.+|+.
T Consensus       261 IWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgsy  340 (603)
T KOG0318|consen  261 IWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSY  340 (603)
T ss_pred             EEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeecc
Confidence            999986420                                        0111233467788999999999999999999


Q ss_pred             CCcEEEeEc
Q 036510          279 NNNVTLWEE  287 (288)
Q Consensus       279 d~~v~~w~~  287 (288)
                      ||.|.=|+.
T Consensus       341 DG~I~~W~~  349 (603)
T KOG0318|consen  341 DGHINSWDS  349 (603)
T ss_pred             CceEEEEec
Confidence            999999985

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.2e-31  Score=239.16  Aligned_cols=247  Identities=17%  Similarity=0.277  Sum_probs=208.8

Q ss_pred             cccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC
Q 036510           10 HEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS   89 (288)
Q Consensus        10 h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~   89 (288)
                      -...|-+++|.|.-.+++++=..|.|++||....  .++..+..|.++|.++.|.+.  ..+|+||++|-.|++|+..+.
T Consensus         8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~--tli~rFdeHdGpVRgv~FH~~--qplFVSGGDDykIkVWnYk~r   83 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG--TLIDRFDEHDGPVRGVDFHPT--QPLFVSGGDDYKIKVWNYKTR   83 (1202)
T ss_pred             ccccccceecCCCCCEEEEeecCceeeeehhhhh--hHHhhhhccCCccceeeecCC--CCeEEecCCccEEEEEecccc
Confidence            3567889999999999999999999999999754  568889999999999999654  679999999999999999765


Q ss_pred             CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecc
Q 036510           90 NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS  169 (288)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~  169 (288)
                      .   +..++.+|.+-|..+.||+.-  --+++++.|++|+||+..+....   .++.+|+--|.|..|.|..        
T Consensus        84 r---clftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~i---avltGHnHYVMcAqFhptE--------  147 (1202)
T KOG0292|consen   84 R---CLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCI---AVLTGHNHYVMCAQFHPTE--------  147 (1202)
T ss_pred             e---ehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceE---EEEecCceEEEeeccCCcc--------
Confidence            4   456788999999999999863  24789999999999998876543   4567888889999999976        


Q ss_pred             cccCCCceeEEeecCCcEEEEEEeC--------C--------------ce---eeeeeeccccCCcceEEEEecCCCCCC
Q 036510          170 GFLDPVQKLCSGGCDNTVKVWKLYN--------G--------------IW---KMDCFPALQMHTDWVRDVAWAPNLGLP  224 (288)
Q Consensus       170 ~~~~~~~~l~s~~~d~~i~iwd~~~--------~--------------~~---~~~~~~~~~~h~~~V~~v~~sp~~~~~  224 (288)
                            .+++|+|-|.+||+||+..        +              .+   ..-..+.+.||+-.|+-++|+|..   
T Consensus       148 ------DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl---  218 (1202)
T KOG0292|consen  148 ------DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL---  218 (1202)
T ss_pred             ------ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc---
Confidence                  7899999999999999842        1              00   111234578999999999999975   


Q ss_pred             CcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          225 KSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       225 ~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                       -+||||++|+.|++|..+..+ -|+....-+|.++|.++-|+|....++|.|+|++|||||+
T Consensus       219 -pliVSG~DDRqVKlWrmnetK-aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm  279 (1202)
T KOG0292|consen  219 -PLIVSGADDRQVKLWRMNETK-AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM  279 (1202)
T ss_pred             -ceEEecCCcceeeEEEecccc-ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEec
Confidence             379999999999999987543 4666666788899999999999999999999999999996

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.98  E-value=2.8e-30  Score=211.87  Aligned_cols=250  Identities=20%  Similarity=0.354  Sum_probs=198.2

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      .+..|++.|++++++|+.+++++||.|....||+...+  +....+.+|+++|.++.|+++  |.+||||..+|.|+||.
T Consensus        59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g--e~~~eltgHKDSVt~~~Fshd--gtlLATGdmsG~v~v~~  134 (399)
T KOG0296|consen   59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG--EFAGELTGHKDSVTCCSFSHD--GTLLATGDMSGKVLVFK  134 (399)
T ss_pred             ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC--cceeEecCCCCceEEEEEccC--ceEEEecCCCccEEEEE
Confidence            35689999999999999999999999999999998644  578899999999999999986  99999999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      ..++..   ...+......+-.+.|||.  +..|++|+.||.+..|.+.+..   ..+++.+|+.++++=.|.|++    
T Consensus       135 ~stg~~---~~~~~~e~~dieWl~WHp~--a~illAG~~DGsvWmw~ip~~~---~~kv~~Gh~~~ct~G~f~pdG----  202 (399)
T KOG0296|consen  135 VSTGGE---QWKLDQEVEDIEWLKWHPR--AHILLAGSTDGSVWMWQIPSQA---LCKVMSGHNSPCTCGEFIPDG----  202 (399)
T ss_pred             cccCce---EEEeecccCceEEEEeccc--ccEEEeecCCCcEEEEECCCcc---eeeEecCCCCCcccccccCCC----
Confidence            987653   2334345567889999995  7889999999999999997642   345677899988888888886    


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCCceeeee---------------------------------------eeccc
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDC---------------------------------------FPALQ  206 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---------------------------------------~~~~~  206 (288)
                                ++++++..|++|++||..+++...+.                                       +....
T Consensus       203 ----------Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n  272 (399)
T KOG0296|consen  203 ----------KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNN  272 (399)
T ss_pred             ----------ceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecC
Confidence                      78999999999999999765321110                                       00111


Q ss_pred             --------cCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeC
Q 036510          207 --------MHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADG  278 (288)
Q Consensus       207 --------~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~  278 (288)
                              .+...+.||.|.|...- -.+.|.|+-||+|-|||+..-    ..+..-+|..+|+.+.|-+ ..+|++++.
T Consensus       273 ~~~~~l~~~~e~~~esve~~~~ss~-lpL~A~G~vdG~i~iyD~a~~----~~R~~c~he~~V~~l~w~~-t~~l~t~c~  346 (399)
T KOG0296|consen  273 GTVPELKPSQEELDESVESIPSSSK-LPLAACGSVDGTIAIYDLAAS----TLRHICEHEDGVTKLKWLN-TDYLLTACA  346 (399)
T ss_pred             CCCccccccchhhhhhhhhcccccc-cchhhcccccceEEEEecccc----hhheeccCCCceEEEEEcC-cchheeecc
Confidence                    34444556666654311 135788889999999998743    2344456778899999999 889999999


Q ss_pred             CCcEEEeEc
Q 036510          279 NNNVTLWEE  287 (288)
Q Consensus       279 d~~v~~w~~  287 (288)
                      ||+|+.||-
T Consensus       347 ~g~v~~wDa  355 (399)
T KOG0296|consen  347 NGKVRQWDA  355 (399)
T ss_pred             CceEEeeec
Confidence            999999994

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=1.7e-30  Score=204.13  Aligned_cols=243  Identities=18%  Similarity=0.309  Sum_probs=189.0

Q ss_pred             EEEEEcCC--CCEEEEee------CCCcEEEEEeCCCC-ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510           15 HDVAMDYY--GKRLATAS------SDYSIKIIGVGNNT-SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus        15 ~~~~~s~~--g~~l~s~~------~d~~i~lwd~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      ++++|||-  ++++++++      ..|++.|.+++.+. ...+..+. -.+.+..++|++. ..+.+++++.||+++|||
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Wse~-~e~~~~~a~GDGSLrl~d   89 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWSEN-HENQVIAASGDGSLRLFD   89 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee-cccceeEeeecCC-CcceEEEEecCceEEEec
Confidence            57899984  54444333      35778888885332 23344444 3577999999965 467999999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      .....  .+++.+++|...|.+++|++.. ...++++++|++|++|+...++..   +...+|..-|....|+|..+   
T Consensus        90 ~~~~s--~Pi~~~kEH~~EV~Svdwn~~~-r~~~ltsSWD~TiKLW~~~r~~Sv---~Tf~gh~~~Iy~a~~sp~~~---  160 (311)
T KOG0277|consen   90 LTMPS--KPIHKFKEHKREVYSVDWNTVR-RRIFLTSSWDGTIKLWDPNRPNSV---QTFNGHNSCIYQAAFSPHIP---  160 (311)
T ss_pred             cCCCC--cchhHHHhhhhheEEecccccc-ceeEEeeccCCceEeecCCCCcce---EeecCCccEEEEEecCCCCC---
Confidence            64332  2556788999999999999975 456777899999999998765443   44568999999999999875   


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE  245 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~  245 (288)
                                ++++++|.|++++|||++...   +. ..+..|...|.+..|+..   ....|+||+.|+.||+||++..
T Consensus       161 ----------nlfas~Sgd~~l~lwdvr~~g---k~-~~i~ah~~Eil~cdw~ky---~~~vl~Tg~vd~~vr~wDir~~  223 (311)
T KOG0277|consen  161 ----------NLFASASGDGTLRLWDVRSPG---KF-MSIEAHNSEILCCDWSKY---NHNVLATGGVDNLVRGWDIRNL  223 (311)
T ss_pred             ----------CeEEEccCCceEEEEEecCCC---ce-eEEEeccceeEeeccccc---CCcEEEecCCCceEEEEehhhc
Confidence                      789999999999999998742   21 236779888999999975   3689999999999999999875


Q ss_pred             CCcccceEeeccccCeEEEEeecC-CCEEEEEeCCCcEEEeEc
Q 036510          246 GDQWEGKVLHDFKTPVYRVSWSLT-GNILAVADGNNNVTLWEE  287 (288)
Q Consensus       246 ~~~~~~~~~~~~~~~i~~~~~spd-g~~l~s~~~d~~v~~w~~  287 (288)
                      ..+  ...+.+|+=.|..++|||- -..||+++-|-++||||.
T Consensus       224 r~p--l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~  264 (311)
T KOG0277|consen  224 RTP--LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDP  264 (311)
T ss_pred             ccc--ceeecCCceEEEEEecCcchhhHhhhccccceEEeccc
Confidence            433  2334566668999999996 578999999999999994

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=1.6e-30  Score=227.20  Aligned_cols=244  Identities=20%  Similarity=0.379  Sum_probs=197.9

Q ss_pred             ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEec-cccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSG-HKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      +.-++..|+++.|+++|++|+.|-.+|.|.|||....  +.+..+.+ |...|.+++|.    +..+.+|+.|+.|..+|
T Consensus       213 ~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~--k~~~~~~~~h~~rvg~laW~----~~~lssGsr~~~I~~~d  286 (484)
T KOG0305|consen  213 CSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ--KKTRTLRGSHASRVGSLAWN----SSVLSSGSRDGKILNHD  286 (484)
T ss_pred             EecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhc--cccccccCCcCceeEEEecc----CceEEEecCCCcEEEEE
Confidence            3344889999999999999999999999999998543  55777888 99999999996    57899999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      ++.....  ..++.+|...|..++|+++  +.++|+|+.|+.+.|||.....   +......|...|..++|+|...   
T Consensus       287 vR~~~~~--~~~~~~H~qeVCgLkws~d--~~~lASGgnDN~~~Iwd~~~~~---p~~~~~~H~aAVKA~awcP~q~---  356 (484)
T KOG0305|consen  287 VRISQHV--VSTLQGHRQEVCGLKWSPD--GNQLASGGNDNVVFIWDGLSPE---PKFTFTEHTAAVKALAWCPWQS---  356 (484)
T ss_pred             Eecchhh--hhhhhcccceeeeeEECCC--CCeeccCCCccceEeccCCCcc---ccEEEeccceeeeEeeeCCCcc---
Confidence            9876542  2247789999999999998  6789999999999999985432   2344567999999999999974   


Q ss_pred             eecccccCCCceeEEe--ecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEe-CCCcEEEEEe
Q 036510          166 LVGSGFLDPVQKLCSG--GCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASAS-EDGKVIIWTV  242 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s-~D~~i~iw~~  242 (288)
                                .+||+|  +.|++|++||..++.    .+..+.. ...|.++.|++..+   .++++-+ .++.|.||+.
T Consensus       357 ----------~lLAsGGGs~D~~i~fwn~~~g~----~i~~vdt-gsQVcsL~Wsk~~k---Ei~sthG~s~n~i~lw~~  418 (484)
T KOG0305|consen  357 ----------GLLATGGGSADRCIKFWNTNTGA----RIDSVDT-GSQVCSLIWSKKYK---ELLSTHGYSENQITLWKY  418 (484)
T ss_pred             ----------CceEEcCCCcccEEEEEEcCCCc----Eeccccc-CCceeeEEEcCCCC---EEEEecCCCCCcEEEEec
Confidence                      678876  559999999999873    3444332 34699999999742   2444444 3778999998


Q ss_pred             ecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          243 AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      -+..   ....+.+|...|..+++||||+.+++|++|.++++|+.
T Consensus       419 ps~~---~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~  460 (484)
T KOG0305|consen  419 PSMK---LVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNL  460 (484)
T ss_pred             cccc---eeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence            6532   23456788889999999999999999999999999984

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.98  E-value=1.5e-31  Score=219.25  Aligned_cols=245  Identities=21%  Similarity=0.332  Sum_probs=189.8

Q ss_pred             ccccccceEEEEEcCCC-CEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            7 ETGHEDTVHDVAMDYYG-KRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      +.||.++|++++=.|.. ..++||+.||.|+|||+..  ..++.++.+|.+.|.+|++..    +-+++++.|++|+.|.
T Consensus        62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq--R~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk  135 (433)
T KOG0268|consen   62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ--RECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK  135 (433)
T ss_pred             ccccccccchhhcCcchhhhhhccccCceEEEEehhh--hhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence            47999999999988876 7799999999999999853  477899999999999999863    6799999999999997


Q ss_pred             cCCC--------------------------Cc----eE-----EeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEE
Q 036510           86 EGNS--------------------------NE----WI-----KDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISV  130 (288)
Q Consensus        86 ~~~~--------------------------~~----~~-----~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i  130 (288)
                      +...                          ++    |.     ++..+.--.+.|.+++|+|.+ ..+|++|+.|+.|.+
T Consensus       136 ~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvE-TsILas~~sDrsIvL  214 (433)
T KOG0268|consen  136 IDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVE-TSILASCASDRSIVL  214 (433)
T ss_pred             ccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCc-chheeeeccCCceEE
Confidence            4210                          00    00     011122233567788888886 457899999999999


Q ss_pred             EeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCc
Q 036510          131 FTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTD  210 (288)
Q Consensus       131 ~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~  210 (288)
                      ||+|++..+.....    +..-..|+|+|+.              -.++++++|.++..+|++.-.   +.+....+|-+
T Consensus       215 yD~R~~~Pl~KVi~----~mRTN~IswnPea--------------fnF~~a~ED~nlY~~DmR~l~---~p~~v~~dhvs  273 (433)
T KOG0268|consen  215 YDLRQASPLKKVIL----TMRTNTICWNPEA--------------FNFVAANEDHNLYTYDMRNLS---RPLNVHKDHVS  273 (433)
T ss_pred             EecccCCccceeee----eccccceecCccc--------------cceeeccccccceehhhhhhc---ccchhhcccce
Confidence            99998765443322    2345679999954              458899999999999998632   34566789999


Q ss_pred             ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeecc-ccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          211 WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDF-KTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       211 ~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~-~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      .|.+|+|||.+    +-|||||.|++|+||..+... .  -...+.- =..|.+++||.|.+++++||.|++||||+
T Consensus       274 AV~dVdfsptG----~EfvsgsyDksIRIf~~~~~~-S--RdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk  343 (433)
T KOG0268|consen  274 AVMDVDFSPTG----QEFVSGSYDKSIRIFPVNHGH-S--RDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK  343 (433)
T ss_pred             eEEEeccCCCc----chhccccccceEEEeecCCCc-c--hhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence            99999999974    669999999999999887431 1  1111110 13689999999999999999999999997

>PTZ00421 coronin; Provisional

Probab=99.98  E-value=2.1e-29  Score=226.51  Aligned_cols=248  Identities=16%  Similarity=0.254  Sum_probs=184.8

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCc--------e---eeEEEeccccCeEEEEecCCCCCCEEEEeeCCC
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTS--------Q---HLAKLSGHKGAVWEVAWAHPKFGSILASCSFDG   79 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~--------~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~   79 (288)
                      -..|.....++++..+++++.+.....|+..++..        +   ....+.+|.+.|++++|++. ++++|++||.|+
T Consensus        20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~-d~~~LaSgS~Dg   98 (493)
T PTZ00421         20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPF-DPQKLFTASEDG   98 (493)
T ss_pred             eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCC-CCCEEEEEeCCC
Confidence            34455555677877788888888888887543210        0   01247799999999999862 478999999999


Q ss_pred             cEEEeecCCCCc----eEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEE
Q 036510           80 TVIIWKEGNSNE----WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSV  155 (288)
Q Consensus        80 ~v~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i  155 (288)
                      +|++||+.....    ......+.+|...|.+++|+|+. ..+|++|+.|++|+|||++++.   ......+|...|.++
T Consensus        99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~---~~~~l~~h~~~V~sl  174 (493)
T PTZ00421         99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGK---AVEVIKCHSDQITSL  174 (493)
T ss_pred             EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCe---EEEEEcCCCCceEEE
Confidence            999999865321    11345678899999999999974 3578999999999999998653   234456789999999


Q ss_pred             EeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcc-eEEEEecCCCCCCCcEEEEEe--
Q 036510          156 SWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDW-VRDVAWAPNLGLPKSTIASAS--  232 (288)
Q Consensus       156 ~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~-V~~v~~sp~~~~~~~~l~s~s--  232 (288)
                      +|+|++              .+|++++.|++|+|||++++    +.+..+.+|.+. +..+.|.|+.    .+|++++  
T Consensus       175 a~spdG--------------~lLatgs~Dg~IrIwD~rsg----~~v~tl~~H~~~~~~~~~w~~~~----~~ivt~G~s  232 (493)
T PTZ00421        175 EWNLDG--------------SLLCTTSKDKKLNIIDPRDG----TIVSSVEAHASAKSQRCLWAKRK----DLIITLGCS  232 (493)
T ss_pred             EEECCC--------------CEEEEecCCCEEEEEECCCC----cEEEEEecCCCCcceEEEEcCCC----CeEEEEecC
Confidence            999987              78999999999999999886    345566778764 4567888864    3555543  


Q ss_pred             --CCCcEEEEEeecCCCcccceEee-ccccCeEEEEeecCCCEEEEEe-CCCcEEEeEc
Q 036510          233 --EDGKVIIWTVAREGDQWEGKVLH-DFKTPVYRVSWSLTGNILAVAD-GNNNVTLWEE  287 (288)
Q Consensus       233 --~D~~i~iw~~~~~~~~~~~~~~~-~~~~~i~~~~~spdg~~l~s~~-~d~~v~~w~~  287 (288)
                        .|+.|++||++....+.  .... .....+....|+||+++|++|+ .|++|++||+
T Consensus       233 ~s~Dr~VklWDlr~~~~p~--~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl  289 (493)
T PTZ00421        233 KSQQRQIMLWDTRKMASPY--STVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL  289 (493)
T ss_pred             CCCCCeEEEEeCCCCCCce--eEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence              48999999997543221  1111 1224566778999999999887 5999999995

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=5.8e-29  Score=225.06  Aligned_cols=229  Identities=16%  Similarity=0.260  Sum_probs=170.0

Q ss_pred             eeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCce-----EEeEEeecCCC
Q 036510           29 ASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEW-----IKDHVFEDHKS  103 (288)
Q Consensus        29 ~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~-----~~~~~~~~h~~  103 (288)
                      |+.++.+++|+...  ...+..+.+|.+.|.+++|++. .+.+|+|||.|++|+|||+......     .....+.+|..
T Consensus        50 GG~~gvI~L~~~~r--~~~v~~L~gH~~~V~~lafsP~-~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~  126 (568)
T PTZ00420         50 GGLIGAIRLENQMR--KPPVIKLKGHTSSILDLQFNPC-FSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK  126 (568)
T ss_pred             CCceeEEEeeecCC--CceEEEEcCCCCCEEEEEEcCC-CCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence            56678899998743  3567889999999999999863 3689999999999999998753210     12335678999


Q ss_pred             ceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeec
Q 036510          104 SVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC  183 (288)
Q Consensus       104 ~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~  183 (288)
                      .|.+++|+|++ ..++++++.|++|++||++.+...  .. . .|...|.+++|+|++              .+|++++.
T Consensus       127 ~V~sVaf~P~g-~~iLaSgS~DgtIrIWDl~tg~~~--~~-i-~~~~~V~SlswspdG--------------~lLat~s~  187 (568)
T PTZ00420        127 KISIIDWNPMN-YYIMCSSGFDSFVNIWDIENEKRA--FQ-I-NMPKKLSSLKWNIKG--------------NLLSGTCV  187 (568)
T ss_pred             cEEEEEECCCC-CeEEEEEeCCCeEEEEECCCCcEE--EE-E-ecCCcEEEEEECCCC--------------CEEEEEec
Confidence            99999999984 346789999999999999876422  11 1 255679999999987              78899999


Q ss_pred             CCcEEEEEEeCCceeeeeeeccccCCcceEEE-----EecCCCCCCCcEEEEEeCCC----cEEEEEeecCCCcccceEe
Q 036510          184 DNTVKVWKLYNGIWKMDCFPALQMHTDWVRDV-----AWAPNLGLPKSTIASASEDG----KVIIWTVAREGDQWEGKVL  254 (288)
Q Consensus       184 d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v-----~~sp~~~~~~~~l~s~s~D~----~i~iw~~~~~~~~~~~~~~  254 (288)
                      |+.|+|||++++    +.+..+.+|.+.+.+.     .|+++    +.+|++++.|+    +|+|||++....+.....+
T Consensus       188 D~~IrIwD~Rsg----~~i~tl~gH~g~~~s~~v~~~~fs~d----~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l  259 (568)
T PTZ00420        188 GKHMHIIDPRKQ----EIASSFHIHDGGKNTKNIWIDGLGGD----DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI  259 (568)
T ss_pred             CCEEEEEECCCC----cEEEEEecccCCceeEEEEeeeEcCC----CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe
Confidence            999999999886    3455677887754432     34565    36788888764    7999999854322111112


Q ss_pred             eccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          255 HDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       255 ~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ....+.+...-..++|.++++|+.|++|++|++
T Consensus       260 d~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~  292 (568)
T PTZ00420        260 DNASAPLIPHYDESTGLIYLIGKGDGNCRYYQH  292 (568)
T ss_pred             cCCccceEEeeeCCCCCEEEEEECCCeEEEEEc
Confidence            222334445555667999999999999999985

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=6.3e-30  Score=216.71  Aligned_cols=245  Identities=23%  Similarity=0.316  Sum_probs=199.6

Q ss_pred             CCCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcE
Q 036510            2 PPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTV   81 (288)
Q Consensus         2 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v   81 (288)
                      .+.+.++-..+.|++++|..||++|++|...|.|+++|..  +...++++.+|+.+|..+.|++ .++..|++|++|+.+
T Consensus        59 ~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k--~r~iLR~~~ah~apv~~~~f~~-~d~t~l~s~sDd~v~  135 (487)
T KOG0310|consen   59 SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMK--SRVILRQLYAHQAPVHVTKFSP-QDNTMLVSGSDDKVV  135 (487)
T ss_pred             hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccc--cHHHHHHHhhccCceeEEEecc-cCCeEEEecCCCceE
Confidence            4555666778999999999999999999999999999953  3345788999999999999975 478999999999999


Q ss_pred             EEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCC
Q 036510           82 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPST  161 (288)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~  161 (288)
                      ++||+.++.   ....+.+|.+-|.|.+|+|.+ ...+++|+.||+|++||+|....+   ...-.|.-+|.++-+-|.+
T Consensus       136 k~~d~s~a~---v~~~l~~htDYVR~g~~~~~~-~hivvtGsYDg~vrl~DtR~~~~~---v~elnhg~pVe~vl~lpsg  208 (487)
T KOG0310|consen  136 KYWDLSTAY---VQAELSGHTDYVRCGDISPAN-DHIVVTGSYDGKVRLWDTRSLTSR---VVELNHGCPVESVLALPSG  208 (487)
T ss_pred             EEEEcCCcE---EEEEecCCcceeEeeccccCC-CeEEEecCCCceEEEEEeccCCce---eEEecCCCceeeEEEcCCC
Confidence            999997654   244678999999999999975 568999999999999999875322   2223466778999888876


Q ss_pred             CCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEE
Q 036510          162 APGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT  241 (288)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~  241 (288)
                                    +++++++. +.||+||+.+|-   +.+..+..|...|+|+++..++    +.|+|||-|+.+++||
T Consensus       209 --------------s~iasAgG-n~vkVWDl~~G~---qll~~~~~H~KtVTcL~l~s~~----~rLlS~sLD~~VKVfd  266 (487)
T KOG0310|consen  209 --------------SLIASAGG-NSVKVWDLTTGG---QLLTSMFNHNKTVTCLRLASDS----TRLLSGSLDRHVKVFD  266 (487)
T ss_pred             --------------CEEEEcCC-CeEEEEEecCCc---eehhhhhcccceEEEEEeecCC----ceEeecccccceEEEE
Confidence                          67888764 679999998763   2333444588899999999864    7899999999999999


Q ss_pred             eecCCCcccceEee--ccccCeEEEEeecCCCEEEEEeCCCcEEE
Q 036510          242 VAREGDQWEGKVLH--DFKTPVYRVSWSLTGNILAVADGNNNVTL  284 (288)
Q Consensus       242 ~~~~~~~~~~~~~~--~~~~~i~~~~~spdg~~l~s~~~d~~v~~  284 (288)
                      +..-      +.++  .+.+||.+++.+||++.++.|-+||.+-+
T Consensus       267 ~t~~------Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~  305 (487)
T KOG0310|consen  267 TTNY------KVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSI  305 (487)
T ss_pred             ccce------EEEEeeecccceeeEEecCCCceEEEecccceeee
Confidence            6532      3333  45789999999999999999999998754

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=1.1e-29  Score=200.21  Aligned_cols=245  Identities=24%  Similarity=0.381  Sum_probs=192.6

Q ss_pred             ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510            7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE   86 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~   86 (288)
                      +.+|.+.|.+|+|+-+|++|++|+.|+++.+|+++..+...-..+.+|.+.|-.++|.|. ....|++++.|++|++||.
T Consensus        16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~-~~d~~atas~dk~ir~wd~   94 (313)
T KOG1407|consen   16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPK-HPDLFATASGDKTIRIWDI   94 (313)
T ss_pred             hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCC-CCcceEEecCCceEEEEEe
Confidence            458999999999999999999999999999999975432223446799999999999865 5789999999999999999


Q ss_pred             CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCC----------------------------
Q 036510           87 GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGG----------------------------  138 (288)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~----------------------------  138 (288)
                      +.+++.   ..+. .++.-.-+.|+|+  +.+++.++.|..|.+.|.++...                            
T Consensus        95 r~~k~~---~~i~-~~~eni~i~wsp~--g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~Gl  168 (313)
T KOG1407|consen   95 RSGKCT---ARIE-TKGENINITWSPD--GEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGL  168 (313)
T ss_pred             ccCcEE---EEee-ccCcceEEEEcCC--CCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCC
Confidence            987743   2232 2334456788998  67888999999999998874211                            


Q ss_pred             ----------eeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccC
Q 036510          139 ----------WDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMH  208 (288)
Q Consensus       139 ----------~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h  208 (288)
                                +.++...++|+....||.|+|++              ++|++|++|..+.|||+.+-    -|...+.-+
T Consensus       169 G~v~ILsypsLkpv~si~AH~snCicI~f~p~G--------------ryfA~GsADAlvSLWD~~EL----iC~R~isRl  230 (313)
T KOG1407|consen  169 GCVEILSYPSLKPVQSIKAHPSNCICIEFDPDG--------------RYFATGSADALVSLWDVDEL----ICERCISRL  230 (313)
T ss_pred             ceEEEEeccccccccccccCCcceEEEEECCCC--------------ceEeeccccceeeccChhHh----hhheeeccc
Confidence                      01112245788888888888887              89999999999999999753    455666778


Q ss_pred             CcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeec--cccCeEEEEeecCCCEEEEEeCC-------
Q 036510          209 TDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHD--FKTPVYRVSWSLTGNILAVADGN-------  279 (288)
Q Consensus       209 ~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~--~~~~i~~~~~spdg~~l~s~~~d-------  279 (288)
                      .-+|+.++||-+    +++||+||.|--|-|=+++..      ..+++  ..++...|+|+|.-.+||.+..|       
T Consensus       231 dwpVRTlSFS~d----g~~lASaSEDh~IDIA~vetG------d~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~r  300 (313)
T KOG1407|consen  231 DWPVRTLSFSHD----GRMLASASEDHFIDIAEVETG------DRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNR  300 (313)
T ss_pred             cCceEEEEeccC----cceeeccCccceEEeEecccC------CeEEEeeccCCceeEEecCCCceeeEEecCCCCcccc
Confidence            889999999998    479999999999888776543      22332  35789999999999999999765       


Q ss_pred             --CcEEEeE
Q 036510          280 --NNVTLWE  286 (288)
Q Consensus       280 --~~v~~w~  286 (288)
                        |+|+++-
T Consensus       301 eag~vKiFG  309 (313)
T KOG1407|consen  301 EAGTVKIFG  309 (313)
T ss_pred             ccceeEEec
Confidence              5677764

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=7.7e-30  Score=217.55  Aligned_cols=253  Identities=21%  Similarity=0.325  Sum_probs=186.9

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCc-------------------------ee-------------
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTS-------------------------QH-------------   47 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~-------------------------~~-------------   47 (288)
                      .+.+|+..|..+.+.|.|.+|+|||.|.+|++||+.+...                         ..             
T Consensus       162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~  241 (641)
T KOG0772|consen  162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLL  241 (641)
T ss_pred             eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEE
Confidence            4568999999999999999999999999999999863211                         00             


Q ss_pred             -------------------eEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceE---EeEEeecCCCce
Q 036510           48 -------------------LAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWI---KDHVFEDHKSSV  105 (288)
Q Consensus        48 -------------------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~---~~~~~~~h~~~v  105 (288)
                                         +....||...+++.+|.|. ..+.|+|||.||++|||++.+.....   +.+.-.+-+-++
T Consensus       242 DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~-~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~  320 (641)
T KOG0772|consen  242 DRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPD-NKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPV  320 (641)
T ss_pred             ccCCceeeeeeccchhhhhhhccCCceeeeeccccccC-cccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCc
Confidence                               0112279999999999654 57899999999999999986544221   111112344578


Q ss_pred             eEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCC--CeeEEEeCCCCCCCceecccccCCCceeEEeec
Q 036510          106 NSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV--GVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC  183 (288)
Q Consensus       106 ~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~--~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~  183 (288)
                      +++.|+|+  +.++|+|+.||.|.+|+.+.........+.++|..  .|+||.||+++              ++|+|-|.
T Consensus       321 tsC~~nrd--g~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg--------------~~LlSRg~  384 (641)
T KOG0772|consen  321 TSCAWNRD--GKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG--------------NYLLSRGF  384 (641)
T ss_pred             eeeecCCC--cchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc--------------chhhhccC
Confidence            99999998  66799999999999999865332223345678877  89999999998              88999999


Q ss_pred             CCcEEEEEEeCCceeeeeeeccccC--CcceEEEEecCCCCCCCcEEEEEeC------CCcEEEEEeecCCCcccceEee
Q 036510          184 DNTVKVWKLYNGIWKMDCFPALQMH--TDWVRDVAWAPNLGLPKSTIASASE------DGKVIIWTVAREGDQWEGKVLH  255 (288)
Q Consensus       184 d~~i~iwd~~~~~~~~~~~~~~~~h--~~~V~~v~~sp~~~~~~~~l~s~s~------D~~i~iw~~~~~~~~~~~~~~~  255 (288)
                      |+++|+||++.-.   +++....+-  ..+-.+++|||+    .++|++|..      -+++.+||...-.   ....+.
T Consensus       385 D~tLKvWDLrq~k---kpL~~~tgL~t~~~~tdc~FSPd----~kli~TGtS~~~~~~~g~L~f~d~~t~d---~v~ki~  454 (641)
T KOG0772|consen  385 DDTLKVWDLRQFK---KPLNVRTGLPTPFPGTDCCFSPD----DKLILTGTSAPNGMTAGTLFFFDRMTLD---TVYKID  454 (641)
T ss_pred             CCceeeeeccccc---cchhhhcCCCccCCCCccccCCC----ceEEEecccccCCCCCceEEEEecccee---eEEEec
Confidence            9999999998642   233332221  123467899998    467888853      4579999876421   112221


Q ss_pred             ccccCeEEEEeecCCCEEEEEeCCCcEEEe
Q 036510          256 DFKTPVYRVSWSLTGNILAVADGNNNVTLW  285 (288)
Q Consensus       256 ~~~~~i~~~~~spdg~~l~s~~~d~~v~~w  285 (288)
                      -....|..+.|||.-++|.+|++||+++||
T Consensus       455 i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  455 ISTASVVRCLWHPKLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             CCCceEEEEeecchhhheeeecCCCceEEE
Confidence            124678999999999999999999999987

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.2e-29  Score=219.03  Aligned_cols=241  Identities=26%  Similarity=0.366  Sum_probs=199.0

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN   90 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~   90 (288)
                      +-+|.+.+|-..-+++++|+.|..||+|+..  +.+.+.++.+|.+-|.+++. ||+ -.+++|+|+|-+||+||..  +
T Consensus        55 ~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn--t~ekV~~FeAH~DyIR~iav-HPt-~P~vLtsSDDm~iKlW~we--~  128 (794)
T KOG0276|consen   55 EVPVRAAKFIARKNWIVTGSDDMQIRVFNYN--TGEKVKTFEAHSDYIRSIAV-HPT-LPYVLTSSDDMTIKLWDWE--N  128 (794)
T ss_pred             ccchhhheeeeccceEEEecCCceEEEEecc--cceeeEEeeccccceeeeee-cCC-CCeEEecCCccEEEEeecc--C
Confidence            4566666777667899999999999999984  55779999999999999997 444 4699999999999999986  4


Q ss_pred             ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceeccc
Q 036510           91 EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG  170 (288)
Q Consensus        91 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~  170 (288)
                      .|.+..++.+|..-|++++|+|.+ ...+|+++.|++|++|.+....   +...+++|..+|.++.+-|.+-        
T Consensus       129 ~wa~~qtfeGH~HyVMqv~fnPkD-~ntFaS~sLDrTVKVWslgs~~---~nfTl~gHekGVN~Vdyy~~gd--------  196 (794)
T KOG0276|consen  129 EWACEQTFEGHEHYVMQVAFNPKD-PNTFASASLDRTVKVWSLGSPH---PNFTLEGHEKGVNCVDYYTGGD--------  196 (794)
T ss_pred             ceeeeeEEcCcceEEEEEEecCCC-ccceeeeeccccEEEEEcCCCC---CceeeeccccCcceEEeccCCC--------
Confidence            577888999999999999999986 4569999999999999987643   2345679999999999987651        


Q ss_pred             ccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCccc
Q 036510          171 FLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWE  250 (288)
Q Consensus       171 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~  250 (288)
                          .-+|+||+.|.+||+||..+.    .|++++.||.+-|+.+.|+|..    -.|+|||.||++|||+...-.  .+
T Consensus       197 ----kpylIsgaDD~tiKvWDyQtk----~CV~TLeGHt~Nvs~v~fhp~l----piiisgsEDGTvriWhs~Ty~--lE  262 (794)
T KOG0276|consen  197 ----KPYLISGADDLTIKVWDYQTK----SCVQTLEGHTNNVSFVFFHPEL----PIIISGSEDGTVRIWNSKTYK--LE  262 (794)
T ss_pred             ----cceEEecCCCceEEEeecchH----HHHHHhhcccccceEEEecCCC----cEEEEecCCccEEEecCccee--hh
Confidence                247999999999999999875    6899999999999999999986    479999999999999865432  12


Q ss_pred             ceEeeccccCeEEEEeecCCCEEEEEeCCCcEEE
Q 036510          251 GKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTL  284 (288)
Q Consensus       251 ~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~  284 (288)
                      ..+..+ -..+++++-.+.+..+++|...|.|.|
T Consensus       263 ~tLn~g-leRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  263 KTLNYG-LERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             hhhhcC-CceEEEEeecCCCCeEEEeccCCcEEE
Confidence            222222 247899999999999999987777643

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=8.3e-30  Score=205.47  Aligned_cols=255  Identities=20%  Similarity=0.294  Sum_probs=202.4

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCC----------------CCceeeEEEeccccCeEEEEecCCCCC
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGN----------------NTSQHLAKLSGHKGAVWEVAWAHPKFG   69 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~----------------~~~~~~~~~~~h~~~v~~~~~~~~~~~   69 (288)
                      .++-|..++.+.+|++||.++++||.|.+|+|.|+..                ...+.++++..|.+.|+++.|.|.  .
T Consensus       107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr--e  184 (430)
T KOG0640|consen  107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR--E  184 (430)
T ss_pred             EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch--h
Confidence            4557999999999999999999999999999999851                012458999999999999999543  7


Q ss_pred             CEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCC
Q 036510           70 SILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHP  149 (288)
Q Consensus        70 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~  149 (288)
                      .+|+|+|.|++|+++|..........+.+ ....+|.+++|||.  |.+++.|..-.++++||+.+-+++..-.....|+
T Consensus       185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPs--GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht  261 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPS--GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT  261 (430)
T ss_pred             heEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCC--CceEEEecCCCceeEEeccceeEeeecCcccccc
Confidence            89999999999999998643211111222 23468999999998  7789999999999999998876655445567899


Q ss_pred             CCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecc-ccCCc-ceEEEEecCCCCCCCcE
Q 036510          150 VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPAL-QMHTD-WVRDVAWAPNLGLPKST  227 (288)
Q Consensus       150 ~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~h~~-~V~~v~~sp~~~~~~~~  227 (288)
                      ..|+++.+++.+              ++.+|+|.||.|||||--.+    +|+.++ ..|.+ .|.+..|..++    ++
T Consensus       262 ~ai~~V~Ys~t~--------------~lYvTaSkDG~IklwDGVS~----rCv~t~~~AH~gsevcSa~Ftkn~----ky  319 (430)
T KOG0640|consen  262 GAITQVRYSSTG--------------SLYVTASKDGAIKLWDGVSN----RCVRTIGNAHGGSEVCSAVFTKNG----KY  319 (430)
T ss_pred             cceeEEEecCCc--------------cEEEEeccCCcEEeeccccH----HHHHHHHhhcCCceeeeEEEccCC----eE
Confidence            999999999987              78999999999999996554    566666 45655 59999999984    78


Q ss_pred             EEEEeCCCcEEEEEeecCCC--------------c--------ccce------------------------EeeccccCe
Q 036510          228 IASASEDGKVIIWTVAREGD--------------Q--------WEGK------------------------VLHDFKTPV  261 (288)
Q Consensus       228 l~s~s~D~~i~iw~~~~~~~--------------~--------~~~~------------------------~~~~~~~~i  261 (288)
                      |++.+.|..+++|.+....-              .        .+..                        ..-+|.+.+
T Consensus       320 iLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~  399 (430)
T KOG0640|consen  320 ILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAV  399 (430)
T ss_pred             EeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCc
Confidence            99999999999999875320              0        0000                        001456678


Q ss_pred             EEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          262 YRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       262 ~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ..+.-||.+.-|++++.|-.+|+|-.
T Consensus       400 R~i~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  400 RWIVHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             eEEEeCCCCCceeeecccceeeeeee
Confidence            88999999999999999999999974

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=4.8e-28  Score=187.72  Aligned_cols=252  Identities=22%  Similarity=0.352  Sum_probs=194.0

Q ss_pred             ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCc---eeeEEEeccccCeEEEEecCCC--CCCEEEEeeC-CCc
Q 036510            7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTS---QHLAKLSGHKGAVWEVAWAHPK--FGSILASCSF-DGT   80 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~---~~~~~~~~h~~~v~~~~~~~~~--~~~~l~s~s~-d~~   80 (288)
                      ...|.+.|++.+|+|+|.+|++|++|++|++.-.++.+-   -.-..+.-|.+.|..++|..++  .+.+|+++++ |-.
T Consensus        85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~  164 (350)
T KOG0641|consen   85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK  164 (350)
T ss_pred             ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence            347899999999999999999999999999986653321   1123467799999999997532  4667777665 444


Q ss_pred             EEEeecCCCCceEEeEEeecCCCceeEE-EeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEee-c--c-CCCCeeEE
Q 036510           81 VIIWKEGNSNEWIKDHVFEDHKSSVNSI-DWAPHELGLCLACGSSDGNISVFTARADGGWDTSRID-Q--A-HPVGVTSV  155 (288)
Q Consensus        81 v~iwd~~~~~~~~~~~~~~~h~~~v~~l-~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~-~--~-~~~~v~~i  155 (288)
                      |.+=|-..+.   ..+.+.+|.+.|.++ .|+    +..+++|++|++|++||+|-+...+.+... .  + ....|.++
T Consensus       165 iy~tdc~~g~---~~~a~sghtghilalyswn----~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav  237 (350)
T KOG0641|consen  165 IYITDCGRGQ---GFHALSGHTGHILALYSWN----GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAV  237 (350)
T ss_pred             EEEeecCCCC---cceeecCCcccEEEEEEec----CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEE
Confidence            4444544443   346688999999887 565    457999999999999999876443322110 1  1 12468888


Q ss_pred             EeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCC
Q 036510          156 SWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG  235 (288)
Q Consensus       156 ~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~  235 (288)
                      ...|.+              ++|++|.+|.++-+||++.+    ++++.+.-|...|+||.|+|.    ..|++++|.|.
T Consensus       238 ~vdpsg--------------rll~sg~~dssc~lydirg~----r~iq~f~phsadir~vrfsp~----a~yllt~syd~  295 (350)
T KOG0641|consen  238 AVDPSG--------------RLLASGHADSSCMLYDIRGG----RMIQRFHPHSADIRCVRFSPG----AHYLLTCSYDM  295 (350)
T ss_pred             EECCCc--------------ceeeeccCCCceEEEEeeCC----ceeeeeCCCccceeEEEeCCC----ceEEEEecccc
Confidence            888887              78999999999999999987    567777889999999999996    47899999999


Q ss_pred             cEEEEEeecCC-CcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          236 KVIIWTVAREG-DQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       236 ~i~iw~~~~~~-~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      .|++=|++-.- .......+.+|+.++..+-|+|+.--|++.++|+++.+|-.
T Consensus       296 ~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  296 KIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL  348 (350)
T ss_pred             eEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence            99999987421 11223455788889999999999999999999999999964

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=4.9e-29  Score=220.75  Aligned_cols=246  Identities=24%  Similarity=0.373  Sum_probs=192.9

Q ss_pred             cccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCC--------------------------------------ceeeE
Q 036510            8 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNT--------------------------------------SQHLA   49 (288)
Q Consensus         8 ~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~--------------------------------------~~~~~   49 (288)
                      .||...|.+++||.+...++||+. +++++|+.+...                                      ...+.
T Consensus       370 ~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~E  448 (888)
T KOG0306|consen  370 GGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVE  448 (888)
T ss_pred             ccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhh
Confidence            467777777777766655555543 366677654210                                      02234


Q ss_pred             EEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCC----CCceEE------eEEeecCCCceeEEEeccCCCCeEE
Q 036510           50 KLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN----SNEWIK------DHVFEDHKSSVNSIDWAPHELGLCL  119 (288)
Q Consensus        50 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~----~~~~~~------~~~~~~h~~~v~~l~~~p~~~~~~l  119 (288)
                      ++.+|.+.||.++-+|+  +..+++||+|++|++||..-    +.+..+      .+++. -.+.|.|++++||  +++|
T Consensus       449 ti~AHdgaIWsi~~~pD--~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spd--gk~L  523 (888)
T KOG0306|consen  449 TIRAHDGAIWSISLSPD--NKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPD--GKLL  523 (888)
T ss_pred             hhhccccceeeeeecCC--CCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCC--CcEE
Confidence            45589999999998865  88999999999999998631    111101      12232 3468999999998  7899


Q ss_pred             EEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceee
Q 036510          120 ACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKM  199 (288)
Q Consensus       120 ~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  199 (288)
                      |.+=.|+++.+|-+.+-   ..+..+-+|.-+|.|++.+|++              ++++|||+|++||||-+.-|    
T Consensus       524 aVsLLdnTVkVyflDtl---KFflsLYGHkLPV~smDIS~DS--------------klivTgSADKnVKiWGLdFG----  582 (888)
T KOG0306|consen  524 AVSLLDNTVKVYFLDTL---KFFLSLYGHKLPVLSMDISPDS--------------KLIVTGSADKNVKIWGLDFG----  582 (888)
T ss_pred             EEEeccCeEEEEEecce---eeeeeecccccceeEEeccCCc--------------CeEEeccCCCceEEeccccc----
Confidence            99999999999987642   2334567899999999999998              78999999999999999887    


Q ss_pred             eeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCC
Q 036510          200 DCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGN  279 (288)
Q Consensus       200 ~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d  279 (288)
                      +|..++-+|++.|.+|.|.|.    ..++-|+|.|+.|+.||-.+   ......+.+|...|++++-+|+|.+++++|+|
T Consensus       583 DCHKS~fAHdDSvm~V~F~P~----~~~FFt~gKD~kvKqWDg~k---Fe~iq~L~~H~~ev~cLav~~~G~~vvs~shD  655 (888)
T KOG0306|consen  583 DCHKSFFAHDDSVMSVQFLPK----THLFFTCGKDGKVKQWDGEK---FEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHD  655 (888)
T ss_pred             hhhhhhhcccCceeEEEEccc----ceeEEEecCcceEEeechhh---hhhheeeccchheeeeeEEcCCCCeEEeccCC
Confidence            688889999999999999996    36789999999999998763   23345667788899999999999999999999


Q ss_pred             CcEEEeEc
Q 036510          280 NNVTLWEE  287 (288)
Q Consensus       280 ~~v~~w~~  287 (288)
                      .+||+|..
T Consensus       656 ~sIRlwE~  663 (888)
T KOG0306|consen  656 KSIRLWER  663 (888)
T ss_pred             ceeEeeec
Confidence            99999973

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=3.9e-28  Score=218.35  Aligned_cols=232  Identities=19%  Similarity=0.238  Sum_probs=169.8

Q ss_pred             cccccccceEEEEEcC-CCCEEEEeeCCCcEEEEEeCCCC-----ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCC
Q 036510            6 IETGHEDTVHDVAMDY-YGKRLATASSDYSIKIIGVGNNT-----SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDG   79 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~-~g~~l~s~~~d~~i~lwd~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~   79 (288)
                      ++.||++.|.+++|+| ++++|++||.|++|++||+....     ...+..+.+|...|.+++|++. .+.+|++++.|+
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~-~~~iLaSgs~Dg  148 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPS-AMNVLASAGADM  148 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcC-CCCEEEEEeCCC
Confidence            3569999999999999 88999999999999999985421     1356788999999999999764 357999999999


Q ss_pred             cEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCC-eeEEEeC
Q 036510           80 TVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVG-VTSVSWA  158 (288)
Q Consensus        80 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-v~~i~~~  158 (288)
                      +|+|||+.++.   ....+..|...|.+++|+|+  +.++++|+.|++|++||++++..   .....+|... ...+.|.
T Consensus       149 tVrIWDl~tg~---~~~~l~~h~~~V~sla~spd--G~lLatgs~Dg~IrIwD~rsg~~---v~tl~~H~~~~~~~~~w~  220 (493)
T PTZ00421        149 VVNVWDVERGK---AVEVIKCHSDQITSLEWNLD--GSLLCTTSKDKKLNIIDPRDGTI---VSSVEAHASAKSQRCLWA  220 (493)
T ss_pred             EEEEEECCCCe---EEEEEcCCCCceEEEEEECC--CCEEEEecCCCEEEEEECCCCcE---EEEEecCCCCcceEEEEc
Confidence            99999998654   34567789999999999998  67899999999999999987643   2234566543 4467788


Q ss_pred             CCCCCCceecccccCCCceeEEee----cCCcEEEEEEeCCceeeeeeecccc-CCcceEEEEecCCCCCCCcEEEEEe-
Q 036510          159 PSTAPGALVGSGFLDPVQKLCSGG----CDNTVKVWKLYNGIWKMDCFPALQM-HTDWVRDVAWAPNLGLPKSTIASAS-  232 (288)
Q Consensus       159 p~~~~~~~~~~~~~~~~~~l~s~~----~d~~i~iwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~~~~l~s~s-  232 (288)
                      |+.              ..+++++    .|+.|++||++....   .+..... +...+....|+|+.    ++|++|+ 
T Consensus       221 ~~~--------------~~ivt~G~s~s~Dr~VklWDlr~~~~---p~~~~~~d~~~~~~~~~~d~d~----~~L~lggk  279 (493)
T PTZ00421        221 KRK--------------DLIITLGCSKSQQRQIMLWDTRKMAS---PYSTVDLDQSSALFIPFFDEDT----NLLYIGSK  279 (493)
T ss_pred             CCC--------------CeEEEEecCCCCCCeEEEEeCCCCCC---ceeEeccCCCCceEEEEEcCCC----CEEEEEEe
Confidence            765              3455443    478999999976421   1222222 23346666788874    5677776 


Q ss_pred             CCCcEEEEEeecCCCcccceEeeccccCeEEEEeecC
Q 036510          233 EDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLT  269 (288)
Q Consensus       233 ~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spd  269 (288)
                      .|++|++|++...... . ..-.....++..++|.|.
T Consensus       280 gDg~Iriwdl~~~~~~-~-~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        280 GEGNIRCFELMNERLT-F-CSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             CCCeEEEEEeeCCceE-E-EeeccCCCCCcceEeccc
Confidence            5999999999854211 1 111122345667777764

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.3e-28  Score=198.77  Aligned_cols=243  Identities=19%  Similarity=0.292  Sum_probs=185.4

Q ss_pred             CccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510            4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVII   83 (288)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i   83 (288)
                      -..+..|...+++|+.+  |+|+||||.|.+|+|||...  ...+..+..|.+.|+++.|.++.....|+||++||.|.|
T Consensus        36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k--~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i  111 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRK--RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII  111 (362)
T ss_pred             cccccccccceeEEEec--ceeEeccCCCCcEEEEeccc--hhhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence            34567899999999998  89999999999999999853  466888899999999999998754558999999999999


Q ss_pred             eecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCC
Q 036510           84 WKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAP  163 (288)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~  163 (288)
                      |+..   .|.+..+++.|.+.|+.++.||.  +++.++.+.|+.+++|++-++..--... + .+.  -+.+.|+|.+  
T Consensus       112 w~~~---~W~~~~slK~H~~~Vt~lsiHPS--~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L-~~~--at~v~w~~~G--  180 (362)
T KOG0294|consen  112 WRVG---SWELLKSLKAHKGQVTDLSIHPS--GKLALSVGGDQVLRTWNLVRGRVAFVLN-L-KNK--ATLVSWSPQG--  180 (362)
T ss_pred             EEcC---CeEEeeeecccccccceeEecCC--CceEEEEcCCceeeeehhhcCccceeec-c-CCc--ceeeEEcCCC--
Confidence            9864   47788999999999999999998  7888888999999999997654321111 1 121  3348999987  


Q ss_pred             CceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEee
Q 036510          164 GALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA  243 (288)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~  243 (288)
                                  ..++.++. +.|-+|.+...    .....+. ..-.+.|+-|-.     +.+|++|.+|+.|++||..
T Consensus       181 ------------d~F~v~~~-~~i~i~q~d~A----~v~~~i~-~~~r~l~~~~l~-----~~~L~vG~d~~~i~~~D~d  237 (362)
T KOG0294|consen  181 ------------DHFVVSGR-NKIDIYQLDNA----SVFREIE-NPKRILCATFLD-----GSELLVGGDNEWISLKDTD  237 (362)
T ss_pred             ------------CEEEEEec-cEEEEEecccH----hHhhhhh-ccccceeeeecC-----CceEEEecCCceEEEeccC
Confidence                        55565554 45778877653    1111111 113356666654     3689999999999999987


Q ss_pred             cCCCcccceEeeccccCeEEEEe--ecCCCEEEEEeCCCcEEEeEc
Q 036510          244 REGDQWEGKVLHDFKTPVYRVSW--SLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       244 ~~~~~~~~~~~~~~~~~i~~~~~--spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ...   ....+..|.+.|-++.+  +|++.+|+++|+||.|+|||+
T Consensus       238 s~~---~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~  280 (362)
T KOG0294|consen  238 SDT---PLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDI  280 (362)
T ss_pred             CCc---cceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEc
Confidence            532   12334556788888774  378999999999999999995

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=1.1e-28  Score=222.55  Aligned_cols=237  Identities=25%  Similarity=0.365  Sum_probs=196.8

Q ss_pred             ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510            7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE   86 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~   86 (288)
                      +.||++.|.+++|...+.+|++|+.|.++++||.  .++++..++.+|...|.++..-    +.++++||.|.+|++|++
T Consensus       245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~--~sg~C~~~l~gh~stv~~~~~~----~~~~~sgs~D~tVkVW~v  318 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDC--STGECTHSLQGHTSSVRCLTID----PFLLVSGSRDNTVKVWDV  318 (537)
T ss_pred             ccCCCCCceeEEEecCCCEEEEEecCCcEEeEec--CCCcEEEEecCCCceEEEEEcc----CceEeeccCCceEEEEec
Confidence            5699999999999887899999999999999996  4568999999999999988853    568899999999999999


Q ss_pred             CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCce
Q 036510           87 GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGAL  166 (288)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~  166 (288)
                      .++.   ..+++.+|..+|+++..+    +.++++|+.|++|++|++++..   ....+++|...|.++.+.+.      
T Consensus       319 ~n~~---~l~l~~~h~~~V~~v~~~----~~~lvsgs~d~~v~VW~~~~~~---cl~sl~gH~~~V~sl~~~~~------  382 (537)
T KOG0274|consen  319 TNGA---CLNLLRGHTGPVNCVQLD----EPLLVSGSYDGTVKVWDPRTGK---CLKSLSGHTGRVYSLIVDSE------  382 (537)
T ss_pred             cCcc---eEEEeccccccEEEEEec----CCEEEEEecCceEEEEEhhhce---eeeeecCCcceEEEEEecCc------
Confidence            8765   556777799999999987    3478999999999999998643   34567789999999977652      


Q ss_pred             ecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCC
Q 036510          167 VGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG  246 (288)
Q Consensus       167 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~  246 (288)
                               ..+++|+.|++|++||+++..   +|++.+.+|...|.++.+..      +.|++++.|++|++||....+
T Consensus       383 ---------~~~~Sgs~D~~IkvWdl~~~~---~c~~tl~~h~~~v~~l~~~~------~~Lvs~~aD~~Ik~WD~~~~~  444 (537)
T KOG0274|consen  383 ---------NRLLSGSLDTTIKVWDLRTKR---KCIHTLQGHTSLVSSLLLRD------NFLVSSSADGTIKLWDAEEGE  444 (537)
T ss_pred             ---------ceEEeeeeccceEeecCCchh---hhhhhhcCCccccccccccc------ceeEeccccccEEEeecccCc
Confidence                     458999999999999998753   68889999999998777654      579999999999999987643


Q ss_pred             CcccceEeec-cccCeEEEEeecCCCEEEEEeCCCcEEEeEcC
Q 036510          247 DQWEGKVLHD-FKTPVYRVSWSLTGNILAVADGNNNVTLWEEA  288 (288)
Q Consensus       247 ~~~~~~~~~~-~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~~  288 (288)
                      .   ...+.+ +...|..+++.  -..+++++.|+++++||++
T Consensus       445 ~---~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~  482 (537)
T KOG0274|consen  445 C---LRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLR  482 (537)
T ss_pred             e---eeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecc
Confidence            1   233344 34567777765  5788889999999999963

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=2.3e-29  Score=211.73  Aligned_cols=220  Identities=27%  Similarity=0.413  Sum_probs=182.2

Q ss_pred             CCccccccccceEEEEEcCCC-CEEEEeeCCCcEEEEEeCCCC-----ceeeEEEeccccCeEEEEecCCCCCCEEEEee
Q 036510            3 PQKIETGHEDTVHDVAMDYYG-KRLATASSDYSIKIIGVGNNT-----SQHLAKLSGHKGAVWEVAWAHPKFGSILASCS   76 (288)
Q Consensus         3 ~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~lwd~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s   76 (288)
                      |...+.||++.=++++|++.- -+|++++.|++|++||+....     ......+.+|.+.|..++|.+ ....+|++++
T Consensus       169 Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~-~h~~lF~sv~  247 (422)
T KOG0264|consen  169 PDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHP-LHEDLFGSVG  247 (422)
T ss_pred             CceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccc-cchhhheeec
Confidence            455677999977899999742 469999999999999996432     223567899999999999964 5678999999


Q ss_pred             CCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEE
Q 036510           77 FDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVS  156 (288)
Q Consensus        77 ~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~  156 (288)
                      +|+.+.|||.+.. +-...+....|..+|+|++|+|.+ ..+||+|+.|++|++||+|+...  ++...++|...|.++.
T Consensus       248 dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~--~lh~~e~H~dev~~V~  323 (422)
T KOG0264|consen  248 DDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNK--PLHTFEGHEDEVFQVE  323 (422)
T ss_pred             CCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhccc--CceeccCCCcceEEEE
Confidence            9999999999963 333456677899999999999986 77899999999999999997643  4567789999999999


Q ss_pred             eCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCce----------eeeeeeccccCCcceEEEEecCCCCCCCc
Q 036510          157 WAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIW----------KMDCFPALQMHTDWVRDVAWAPNLGLPKS  226 (288)
Q Consensus       157 ~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----------~~~~~~~~~~h~~~V~~v~~sp~~~~~~~  226 (288)
                      |+|...             ..|+|++.|+.+.+||+..-..          ..+++....||...|..+.|+|..   +-
T Consensus       324 WSPh~e-------------tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~e---PW  387 (422)
T KOG0264|consen  324 WSPHNE-------------TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNE---PW  387 (422)
T ss_pred             eCCCCC-------------ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCC---Ce
Confidence            999873             7899999999999999953110          123445568999999999999985   67


Q ss_pred             EEEEEeCCCcEEEEEee
Q 036510          227 TIASASEDGKVIIWTVA  243 (288)
Q Consensus       227 ~l~s~s~D~~i~iw~~~  243 (288)
                      .|+|++.|+.+.||+..
T Consensus       388 ~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  388 TIASVAEDNILQIWQMA  404 (422)
T ss_pred             EEEEecCCceEEEeecc
Confidence            89999999999999876

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3.4e-27  Score=190.85  Aligned_cols=253  Identities=13%  Similarity=0.186  Sum_probs=189.3

Q ss_pred             CCCCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeC--C
Q 036510            1 MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSF--D   78 (288)
Q Consensus         1 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~--d   78 (288)
                      |-|.|.+......|.++.|+++|.+|++++.|.+++|||...  ++.+.++..++..+..++|.+.  ...++.+|.  |
T Consensus         4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~--g~~~~ti~skkyG~~~~~Fth~--~~~~i~sStk~d   79 (311)
T KOG1446|consen    4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS--GKQVKTINSKKYGVDLACFTHH--SNTVIHSSTKED   79 (311)
T ss_pred             cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCC--CceeeEeecccccccEEEEecC--CceEEEccCCCC
Confidence            556677777789999999999999999999999999999854  4678889989999999999875  345555554  9


Q ss_pred             CcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeC
Q 036510           79 GTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWA  158 (288)
Q Consensus        79 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~  158 (288)
                      .+||.-++.+..   .++.+++|.+.|++|+.+|-+  ..+++++.|++|++||+|...+... ....    .--.++|+
T Consensus        80 ~tIryLsl~dNk---ylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~-l~~~----~~pi~AfD  149 (311)
T KOG1446|consen   80 DTIRYLSLHDNK---YLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGL-LNLS----GRPIAAFD  149 (311)
T ss_pred             CceEEEEeecCc---eEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceE-EecC----CCcceeEC
Confidence            999999997755   567899999999999999984  6789999999999999996543222 1111    22346788


Q ss_pred             CCCCCCceecccccCCCceeEEeecCCcEEEEEEeCC-ceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcE
Q 036510          159 PSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNG-IWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKV  237 (288)
Q Consensus       159 p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i  237 (288)
                      |++              -++|.+...+.|+|||++.- .-++........-....+.+.|||++    ++++-....+.+
T Consensus       150 p~G--------------LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dG----K~iLlsT~~s~~  211 (311)
T KOG1446|consen  150 PEG--------------LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDG----KSILLSTNASFI  211 (311)
T ss_pred             CCC--------------cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCC----CEEEEEeCCCcE
Confidence            887              56778877779999999752 11111111111223356999999985    677788888889


Q ss_pred             EEEEeecCCCcccceEeeccc---cCeEEEEeecCCCEEEEEeCCCcEEEeEcC
Q 036510          238 IIWTVAREGDQWEGKVLHDFK---TPVYRVSWSLTGNILAVADGNNNVTLWEEA  288 (288)
Q Consensus       238 ~iw~~~~~~~~~~~~~~~~~~---~~i~~~~~spdg~~l~s~~~d~~v~~w~~~  288 (288)
                      .+.|.-....   ...+.++.   +--.+++|+||++++++|+.||+|++|+.+
T Consensus       212 ~~lDAf~G~~---~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~  262 (311)
T KOG1446|consen  212 YLLDAFDGTV---KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLE  262 (311)
T ss_pred             EEEEccCCcE---eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcC
Confidence            9998765421   12222222   123689999999999999999999999853

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=2.6e-28  Score=224.08  Aligned_cols=255  Identities=26%  Similarity=0.396  Sum_probs=204.1

Q ss_pred             ccccceEEEEEcCCCCEEEEee--CCCcEEEEEeCC---------C-CceeeEEEeccccCeEEEEecCCCCCCEEEEee
Q 036510            9 GHEDTVHDVAMDYYGKRLATAS--SDYSIKIIGVGN---------N-TSQHLAKLSGHKGAVWEVAWAHPKFGSILASCS   76 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l~s~~--~d~~i~lwd~~~---------~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s   76 (288)
                      +++..|++|..+|+|..++||+  .|+.+++|..+.         . -.+.+.++..|.+.|+++.|+++  |.+||+||
T Consensus        11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~d--G~~lAsGS   88 (942)
T KOG0973|consen   11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPD--GSYLASGS   88 (942)
T ss_pred             cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCC--CCeEeecc
Confidence            4578899999999999999999  999999997531         1 13567888999999999999975  99999999


Q ss_pred             CCCcEEEeecCC---------------CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeee
Q 036510           77 FDGTVIIWKEGN---------------SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDT  141 (288)
Q Consensus        77 ~d~~v~iwd~~~---------------~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~  141 (288)
                      +|+.|.||+...               .+.|.....+.+|...|..+.|+|+  +.++++++.|++|.||+.++.   ..
T Consensus        89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~--~~~lvS~s~DnsViiwn~~tF---~~  163 (942)
T KOG0973|consen   89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD--DSLLVSVSLDNSVIIWNAKTF---EL  163 (942)
T ss_pred             CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC--ccEEEEecccceEEEEccccc---ee
Confidence            999999998752               0135566778899999999999997  678999999999999998764   44


Q ss_pred             EEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeC--------Cce----------------
Q 036510          142 SRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYN--------GIW----------------  197 (288)
Q Consensus       142 ~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--------~~~----------------  197 (288)
                      ..+..+|...|.-+.|.|.+              ++|+|-+.|++|++|++.+        +.+                
T Consensus       164 ~~vl~~H~s~VKGvs~DP~G--------------ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP  229 (942)
T KOG0973|consen  164 LKVLRGHQSLVKGVSWDPIG--------------KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP  229 (942)
T ss_pred             eeeeecccccccceEECCcc--------------CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCC
Confidence            56778999999999999987              8999999999999999521        000                


Q ss_pred             ----------------ee--------eeeeccccCCcceEEEEecCCCC---C------CC----cEEEEEeCCCcEEEE
Q 036510          198 ----------------KM--------DCFPALQMHTDWVRDVAWAPNLG---L------PK----STIASASEDGKVIIW  240 (288)
Q Consensus       198 ----------------~~--------~~~~~~~~h~~~V~~v~~sp~~~---~------~~----~~l~s~s~D~~i~iw  240 (288)
                                      ..        +.-..+.||..+|.+|.|+|..-   .      .+    ..+|+||.|++|-||
T Consensus       230 DG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW  309 (942)
T KOG0973|consen  230 DGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVW  309 (942)
T ss_pred             CcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEE
Confidence                            00        11224679999999999999420   0      01    268999999999999


Q ss_pred             EeecCCCcccceEeec-cccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          241 TVAREGDQWEGKVLHD-FKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       241 ~~~~~~~~~~~~~~~~-~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ...... +  .-.++. +...|..++|+|||-.|.++|-||+|.+..+
T Consensus       310 ~T~~~R-P--l~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~F  354 (942)
T KOG0973|consen  310 NTALPR-P--LFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHF  354 (942)
T ss_pred             ecCCCC-c--hhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEc
Confidence            875432 1  111222 3568999999999999999999999999874

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=3.6e-28  Score=195.19  Aligned_cols=246  Identities=20%  Similarity=0.270  Sum_probs=183.2

Q ss_pred             cccccceEEEEEcC-CCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510            8 TGHEDTVHDVAMDY-YGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE   86 (288)
Q Consensus         8 ~~h~~~v~~~~~s~-~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~   86 (288)
                      ..-++.|..|+||| ...+++++|+|++||+|++.......-.....|.++|.+++|+.+  |..+++|+.|+++++||+
T Consensus        24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsdd--gskVf~g~~Dk~~k~wDL  101 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDD--GSKVFSGGCDKQAKLWDL  101 (347)
T ss_pred             CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccC--CceEEeeccCCceEEEEc
Confidence            34578999999999 456677999999999999975311112445679999999999854  899999999999999999


Q ss_pred             CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCce
Q 036510           87 GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGAL  166 (288)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~  166 (288)
                      .++.    ...+..|..+|.++.|-+.....+|++|++|++|+.||+|........    .-+..+.+++.         
T Consensus       102 ~S~Q----~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~----~LPeRvYa~Dv---------  164 (347)
T KOG0647|consen  102 ASGQ----VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL----QLPERVYAADV---------  164 (347)
T ss_pred             cCCC----eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee----eccceeeehhc---------
Confidence            8763    455778999999999987654457999999999999999965433221    12334444432         


Q ss_pred             ecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCC
Q 036510          167 VGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG  246 (288)
Q Consensus       167 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~  246 (288)
                           ..  -+++.+..++.|.+|+++++..+++.+.+-  -.-.++||+..++.    ...|-||-.|.+-|..+....
T Consensus       165 -----~~--pm~vVata~r~i~vynL~n~~te~k~~~Sp--Lk~Q~R~va~f~d~----~~~alGsiEGrv~iq~id~~~  231 (347)
T KOG0647|consen  165 -----LY--PMAVVATAERHIAVYNLENPPTEFKRIESP--LKWQTRCVACFQDK----DGFALGSIEGRVAIQYIDDPN  231 (347)
T ss_pred             -----cC--ceeEEEecCCcEEEEEcCCCcchhhhhcCc--ccceeeEEEEEecC----CceEeeeecceEEEEecCCCC
Confidence                 11  347778889999999998875444433222  22348999988875    346889999999999887642


Q ss_pred             CcccceEeecccc---------CeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          247 DQWEGKVLHDFKT---------PVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       247 ~~~~~~~~~~~~~---------~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      . ..+-.++.|..         .|++++|+|.-..|+++++||++.+||
T Consensus       232 ~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWD  279 (347)
T KOG0647|consen  232 P-KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWD  279 (347)
T ss_pred             c-cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEec
Confidence            2 22334444541         367899999999999999999999998

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=4.1e-28  Score=218.78  Aligned_cols=237  Identities=25%  Similarity=0.410  Sum_probs=192.5

Q ss_pred             cccc-cccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEE-EeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510            6 IETG-HEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAK-LSGHKGAVWEVAWAHPKFGSILASCSFDGTVII   83 (288)
Q Consensus         6 ~~~~-h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i   83 (288)
                      .+.+ |...+.+..|.  ..++.+++.|.++++|+...  +..+.+ +.||.+.|+++++..  .+.+|++||.|.++++
T Consensus       202 ~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~--~~~i~~~l~GH~g~V~~l~~~~--~~~~lvsgS~D~t~rv  275 (537)
T KOG0274|consen  202 VLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNN--GYLILTRLVGHFGGVWGLAFPS--GGDKLVSGSTDKTERV  275 (537)
T ss_pred             eecccCcchhhhheee--cCeEEecCCCceeEEeeccc--ceEEEeeccCCCCCceeEEEec--CCCEEEEEecCCcEEe
Confidence            3444 45666677777  55899999999999999743  355555 999999999999964  3789999999999999


Q ss_pred             eecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCC
Q 036510           84 WKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAP  163 (288)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~  163 (288)
                      ||..++.   +.+++.+|...|.++...+    .++++|+.|.+|++|++.++..   .....+|..+|.++..+  .  
T Consensus       276 Wd~~sg~---C~~~l~gh~stv~~~~~~~----~~~~sgs~D~tVkVW~v~n~~~---l~l~~~h~~~V~~v~~~--~--  341 (537)
T KOG0274|consen  276 WDCSTGE---CTHSLQGHTSSVRCLTIDP----FLLVSGSRDNTVKVWDVTNGAC---LNLLRGHTGPVNCVQLD--E--  341 (537)
T ss_pred             EecCCCc---EEEEecCCCceEEEEEccC----ceEeeccCCceEEEEeccCcce---EEEeccccccEEEEEec--C--
Confidence            9988776   5778889999999998654    4678899999999999986643   34445699999999876  2  


Q ss_pred             CceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEee
Q 036510          164 GALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA  243 (288)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~  243 (288)
                                  .++++|+.|++|++||+.++    ++++++.+|..+|.++.+.+.     ..+.+|+.|++|++||+.
T Consensus       342 ------------~~lvsgs~d~~v~VW~~~~~----~cl~sl~gH~~~V~sl~~~~~-----~~~~Sgs~D~~IkvWdl~  400 (537)
T KOG0274|consen  342 ------------PLLVSGSYDGTVKVWDPRTG----KCLKSLSGHTGRVYSLIVDSE-----NRLLSGSLDTTIKVWDLR  400 (537)
T ss_pred             ------------CEEEEEecCceEEEEEhhhc----eeeeeecCCcceEEEEEecCc-----ceEEeeeeccceEeecCC
Confidence                        67999999999999999865    789999999999999988762     479999999999999998


Q ss_pred             cCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          244 REGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       244 ~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ...  .....+.+|.+.+..+.  ..+++|++++.|++|++||.
T Consensus       401 ~~~--~c~~tl~~h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~  440 (537)
T KOG0274|consen  401 TKR--KCIHTLQGHTSLVSSLL--LRDNFLVSSSADGTIKLWDA  440 (537)
T ss_pred             chh--hhhhhhcCCcccccccc--cccceeEeccccccEEEeec
Confidence            642  12234456666664444  58999999999999999984

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.3e-28  Score=199.24  Aligned_cols=248  Identities=25%  Similarity=0.377  Sum_probs=202.6

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      .+.||.++|..++.......+.++|.|.+.+||.+.  .+.++.++.||.++|+++.|.+  .+.+++++|.|++..||.
T Consensus       143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~E--sg~CL~~Y~GH~GSVNsikfh~--s~~L~lTaSGD~taHIW~  218 (481)
T KOG0300|consen  143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLE--SGACLATYTGHTGSVNSIKFHN--SGLLLLTASGDETAHIWK  218 (481)
T ss_pred             hhcccccceeeehhhcCCcceeecccccceeEEeec--cccceeeecccccceeeEEecc--ccceEEEccCCcchHHHH
Confidence            456999999999887777899999999999999995  4589999999999999999975  388999999999999996


Q ss_pred             cC------CCC------------------------------ce-EEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcE
Q 036510           86 EG------NSN------------------------------EW-IKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNI  128 (288)
Q Consensus        86 ~~------~~~------------------------------~~-~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i  128 (288)
                      ..      ..+                              +. .+...+.+|...|.+.+|-..  +.+++++++|.+-
T Consensus       219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g--g~Q~vTaSWDRTA  296 (481)
T KOG0300|consen  219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG--GQQMVTASWDRTA  296 (481)
T ss_pred             HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcC--cceeeeeeccccc
Confidence            21      000                              00 012246789999999999875  6789999999999


Q ss_pred             EEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccC
Q 036510          129 SVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMH  208 (288)
Q Consensus       129 ~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h  208 (288)
                      .+||+.++..   +..+.+|....+-+.-.|..              +++++++.|.+.++||.++..   ..+..++||
T Consensus       297 nlwDVEtge~---v~~LtGHd~ELtHcstHptQ--------------rLVvTsSrDtTFRLWDFReaI---~sV~VFQGH  356 (481)
T KOG0300|consen  297 NLWDVETGEV---VNILTGHDSELTHCSTHPTQ--------------RLVVTSSRDTTFRLWDFREAI---QSVAVFQGH  356 (481)
T ss_pred             eeeeeccCce---eccccCcchhccccccCCcc--------------eEEEEeccCceeEeccchhhc---ceeeeeccc
Confidence            9999987643   45667888888877777765              778899999999999998753   456678999


Q ss_pred             CcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          209 TDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       209 ~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      .+.|.++.|..+     ..+|+||+|.+|++||++...-+  ... .-..++++.++.+..+++||.--.++.|||||+
T Consensus       357 tdtVTS~vF~~d-----d~vVSgSDDrTvKvWdLrNMRsp--lAT-IRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDl  427 (481)
T KOG0300|consen  357 TDTVTSVVFNTD-----DRVVSGSDDRTVKVWDLRNMRSP--LAT-IRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDL  427 (481)
T ss_pred             ccceeEEEEecC-----CceeecCCCceEEEeeeccccCc--cee-eecCCccceeEeecCCceEEeccCCceEEEEec
Confidence            999999999986     47999999999999999865321  111 112468999999999999999988899999995

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=1.8e-26  Score=208.97  Aligned_cols=234  Identities=16%  Similarity=0.227  Sum_probs=165.2

Q ss_pred             ccccccccceEEEEEcCC-CCEEEEeeCCCcEEEEEeCCCC------ceeeEEEeccccCeEEEEecCCCCCCEEEEeeC
Q 036510            5 KIETGHEDTVHDVAMDYY-GKRLATASSDYSIKIIGVGNNT------SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSF   77 (288)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~-g~~l~s~~~d~~i~lwd~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~   77 (288)
                      ..+.+|.+.|.+++|+|+ +++|+|||.|++|+|||+....      ...+..+.+|...|.+++|+|. ...+|++++.
T Consensus        68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~-g~~iLaSgS~  146 (568)
T PTZ00420         68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPM-NYYIMCSSGF  146 (568)
T ss_pred             EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCC-CCeEEEEEeC
Confidence            346799999999999997 7899999999999999985321      1234578899999999999864 2345689999


Q ss_pred             CCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEE-
Q 036510           78 DGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVS-  156 (288)
Q Consensus        78 d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~-  156 (288)
                      |++|+|||++++..   ...+. |...|.+++|+|+  +.++++++.|+.|+|||++.+..   .....+|...+.+.. 
T Consensus       147 DgtIrIWDl~tg~~---~~~i~-~~~~V~Slswspd--G~lLat~s~D~~IrIwD~Rsg~~---i~tl~gH~g~~~s~~v  217 (568)
T PTZ00420        147 DSFVNIWDIENEKR---AFQIN-MPKKLSSLKWNIK--GNLLSGTCVGKHMHIIDPRKQEI---ASSFHIHDGGKNTKNI  217 (568)
T ss_pred             CCeEEEEECCCCcE---EEEEe-cCCcEEEEEECCC--CCEEEEEecCCEEEEEECCCCcE---EEEEecccCCceeEEE
Confidence            99999999987652   23343 5578999999998  67888899999999999987643   233457766544332 


Q ss_pred             ----eCCCCCCCceecccccCCCceeEEeecCC----cEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEE
Q 036510          157 ----WAPSTAPGALVGSGFLDPVQKLCSGGCDN----TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTI  228 (288)
Q Consensus       157 ----~~p~~~~~~~~~~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l  228 (288)
                          |++++              .++++++.|+    .|+|||++.....+. ...+..+...+.. .|.++.   +.++
T Consensus       218 ~~~~fs~d~--------------~~IlTtG~d~~~~R~VkLWDlr~~~~pl~-~~~ld~~~~~L~p-~~D~~t---g~l~  278 (568)
T PTZ00420        218 WIDGLGGDD--------------NYILSTGFSKNNMREMKLWDLKNTTSALV-TMSIDNASAPLIP-HYDEST---GLIY  278 (568)
T ss_pred             EeeeEcCCC--------------CEEEEEEcCCCCccEEEEEECCCCCCceE-EEEecCCccceEE-eeeCCC---CCEE
Confidence                33443              6788877774    799999985321111 1122333333222 333432   4689


Q ss_pred             EEEeCCCcEEEEEeecCCCcccceEeec--cccCeEEEEeecCCC
Q 036510          229 ASASEDGKVIIWTVAREGDQWEGKVLHD--FKTPVYRVSWSLTGN  271 (288)
Q Consensus       229 ~s~s~D~~i~iw~~~~~~~~~~~~~~~~--~~~~i~~~~~spdg~  271 (288)
                      ++|+.|++|++|++....    ...+..  +..++.+++|.|+-.
T Consensus       279 lsGkGD~tIr~~e~~~~~----~~~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        279 LIGKGDGNCRYYQHSLGS----IRKVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             EEEECCCeEEEEEccCCc----EEeecccccCCCccceEEccccc
Confidence            999999999999986431    122222  346788899999754

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=4e-27  Score=183.40  Aligned_cols=242  Identities=24%  Similarity=0.343  Sum_probs=191.6

Q ss_pred             ccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510            5 KIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW   84 (288)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw   84 (288)
                      +...||...|..++.+.|+..++||+.|+.+.+||++  +++.++.+.+|.+.|+.++|+.  +..+++|||.|.++++|
T Consensus        53 ktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~--TGkv~Rr~rgH~aqVNtV~fNe--esSVv~SgsfD~s~r~w  128 (307)
T KOG0316|consen   53 KTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN--TGKVDRRFRGHLAQVNTVRFNE--ESSVVASGSFDSSVRLW  128 (307)
T ss_pred             eeecCCCceeeeccccccccccccCCCCceEEEEEcc--cCeeeeecccccceeeEEEecC--cceEEEeccccceeEEE
Confidence            3556899999999999999999999999999999995  4578999999999999999974  47899999999999999


Q ss_pred             ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510           85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG  164 (288)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~  164 (288)
                      |-++.. ..+++++....+.|.++.++.+    .+++|+.||++|.||+|.+...   .  .....+|++++|++++   
T Consensus       129 DCRS~s-~ePiQildea~D~V~Si~v~~h----eIvaGS~DGtvRtydiR~G~l~---s--Dy~g~pit~vs~s~d~---  195 (307)
T KOG0316|consen  129 DCRSRS-FEPIQILDEAKDGVSSIDVAEH----EIVAGSVDGTVRTYDIRKGTLS---S--DYFGHPITSVSFSKDG---  195 (307)
T ss_pred             EcccCC-CCccchhhhhcCceeEEEeccc----EEEeeccCCcEEEEEeecceee---h--hhcCCcceeEEecCCC---
Confidence            987643 3356677778889999998765    4889999999999999976421   1  1234469999999997   


Q ss_pred             ceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEE--EecCCCCCCCcEEEEEeCCCcEEEEEe
Q 036510          165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDV--AWAPNLGLPKSTIASASEDGKVIIWTV  242 (288)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v--~~sp~~~~~~~~l~s~s~D~~i~iw~~  242 (288)
                                 +.+..++-|+++++.|-.+|    +++.+.+||.+.=..+  +++..    ...+++||.||.+.+||+
T Consensus       196 -----------nc~La~~l~stlrLlDk~tG----klL~sYkGhkn~eykldc~l~qs----dthV~sgSEDG~Vy~wdL  256 (307)
T KOG0316|consen  196 -----------NCSLASSLDSTLRLLDKETG----KLLKSYKGHKNMEYKLDCCLNQS----DTHVFSGSEDGKVYFWDL  256 (307)
T ss_pred             -----------CEEEEeeccceeeecccchh----HHHHHhcccccceeeeeeeeccc----ceeEEeccCCceEEEEEe
Confidence                       66778899999999999888    5777889998743332  44432    468999999999999999


Q ss_pred             ecCCCcccceEeeccccC-eEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          243 AREGDQWEGKVLHDFKTP-VYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~-i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      -....   ...+..+..+ |.+++++|.-..|+++.. +.+.+|.
T Consensus       257 vd~~~---~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~  297 (307)
T KOG0316|consen  257 VDETQ---ISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWY  297 (307)
T ss_pred             cccee---eeeeccCCceeEEeeecccCccceeEecC-Cceecee
Confidence            75422   1222233455 789999999988888854 4555664

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.5e-28  Score=212.43  Aligned_cols=241  Identities=20%  Similarity=0.286  Sum_probs=190.2

Q ss_pred             EEEEc-CCCCEEEEeeCCCcEEEEEeCCCC----ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510           16 DVAMD-YYGKRLATASSDYSIKIIGVGNNT----SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN   90 (288)
Q Consensus        16 ~~~~s-~~g~~l~s~~~d~~i~lwd~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~   90 (288)
                      .+..+ |.++||++||.|+.|++|++....    .+.+.++..|.+=|+.+.-..  +++.|+|+|.|-+|++|+....+
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~--~~~tlIS~SsDtTVK~W~~~~~~  106 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCG--NGKTLISASSDTTVKVWNAHKDN  106 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhc--CCCceEEecCCceEEEeecccCc
Confidence            34455 457889999999999999885322    234778888998888887654  47899999999999999987665


Q ss_pred             ceEEeEEeecCCCceeEEEe-ccCCCCeEEEEEeCCCcEEEEeecCCCC-----eee--EE-eeccCCCCeeEEEeCCCC
Q 036510           91 EWIKDHVFEDHKSSVNSIDW-APHELGLCLACGSSDGNISVFTARADGG-----WDT--SR-IDQAHPVGVTSVSWAPST  161 (288)
Q Consensus        91 ~~~~~~~~~~h~~~v~~l~~-~p~~~~~~l~sg~~d~~i~i~d~~~~~~-----~~~--~~-~~~~~~~~v~~i~~~p~~  161 (288)
                      .+ +..++..|.+-|.|++. -++  ..++|+||.|+.|.+||+..+..     .+.  .. ...++..+|.+++-++.+
T Consensus       107 ~~-c~stir~H~DYVkcla~~ak~--~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~  183 (735)
T KOG0308|consen  107 TF-CMSTIRTHKDYVKCLAYIAKN--NELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG  183 (735)
T ss_pred             ch-hHhhhhcccchheeeeecccC--ceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc
Confidence            33 56678889999999998 444  56899999999999999985421     110  01 112667778888777765


Q ss_pred             CCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEE
Q 036510          162 APGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT  241 (288)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~  241 (288)
                                    ..+++|+..+.+++||.+++.    .+..+.||.+-|+++..++|+    ++++|+|+|++|++||
T Consensus       184 --------------t~ivsGgtek~lr~wDprt~~----kimkLrGHTdNVr~ll~~dDG----t~~ls~sSDgtIrlWd  241 (735)
T KOG0308|consen  184 --------------TIIVSGGTEKDLRLWDPRTCK----KIMKLRGHTDNVRVLLVNDDG----TRLLSASSDGTIRLWD  241 (735)
T ss_pred             --------------eEEEecCcccceEEecccccc----ceeeeeccccceEEEEEcCCC----CeEeecCCCceEEeee
Confidence                          679999999999999998863    355678999999999999984    7899999999999999


Q ss_pred             eecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          242 VAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      +...  ++ ...+..|...|+++..+|+-+.+++|+.|+.|..=|
T Consensus       242 LgqQ--rC-l~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Td  283 (735)
T KOG0308|consen  242 LGQQ--RC-LATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTD  283 (735)
T ss_pred             cccc--ce-eeeEEeccCceEEEeeCCCcceEEecCCCCcEEecc
Confidence            8742  22 234566777799999999999999999999987644

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.4e-27  Score=186.74  Aligned_cols=221  Identities=30%  Similarity=0.472  Sum_probs=180.9

Q ss_pred             cccccccceEEEEEcC--CCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510            6 IETGHEDTVHDVAMDY--YGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVII   83 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~--~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i   83 (288)
                      .+.||+++|..+.|-.  .|.+|||+++|+.|-||...+++.........|..+|++++|.|.+.|-.|+++|.||.|.|
T Consensus        51 ~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsv  130 (299)
T KOG1332|consen   51 ELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSV  130 (299)
T ss_pred             EecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEE
Confidence            4679999999999864  69999999999999999987776666777789999999999988778899999999999999


Q ss_pred             eecCCCCceEEeEEeecCCCceeEEEeccCCC------------CeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCC
Q 036510           84 WKEGNSNEWIKDHVFEDHKSSVNSIDWAPHEL------------GLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVG  151 (288)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~------------~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  151 (288)
                      .+....+.+...++...|.-.|++++|.|...            -+.|++|+-|+.|+||+...+ .|.....+++|.+-
T Consensus       131 l~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dw  209 (299)
T KOG1332|consen  131 LTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDW  209 (299)
T ss_pred             EEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhcchh
Confidence            99876655555556678999999999998621            156999999999999998765 45444557899999


Q ss_pred             eeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeC--CceeeeeeeccccCCcceEEEEecCCCCCCCcEEE
Q 036510          152 VTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYN--GIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIA  229 (288)
Q Consensus       152 v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~  229 (288)
                      |+.++|+|....          +...++|+|.|+++.||-...  ++++.++   +....+.+..++||+.    ++.|+
T Consensus       210 VRDVAwaP~~gl----------~~s~iAS~SqDg~viIwt~~~e~e~wk~tl---l~~f~~~~w~vSWS~s----Gn~La  272 (299)
T KOG1332|consen  210 VRDVAWAPSVGL----------PKSTIASCSQDGTVIIWTKDEEYEPWKKTL---LEEFPDVVWRVSWSLS----GNILA  272 (299)
T ss_pred             hhhhhhccccCC----------CceeeEEecCCCcEEEEEecCccCcccccc---cccCCcceEEEEEecc----ccEEE
Confidence            999999998532          126799999999999998763  2333333   3446778999999997    47899


Q ss_pred             EEeCCCcEEEEEeec
Q 036510          230 SASEDGKVIIWTVAR  244 (288)
Q Consensus       230 s~s~D~~i~iw~~~~  244 (288)
                      .++.|+.+.+|....
T Consensus       273 Vs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  273 VSGGDNKVTLWKENV  287 (299)
T ss_pred             EecCCcEEEEEEeCC
Confidence            999999999998654

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=2.2e-27  Score=208.77  Aligned_cols=239  Identities=24%  Similarity=0.339  Sum_probs=195.4

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEE-EEecCCCCCCEEEEeeCCCcEEEe
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWE-VAWAHPKFGSILASCSFDGTVIIW   84 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~l~s~s~d~~v~iw   84 (288)
                      .+.||...|..+++.+.. .++++|.|+++++|+-.+...-....+.+|.+-|.. ++|.. .++..+++|++|.++.+|
T Consensus         9 ~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~   86 (745)
T KOG0301|consen    9 ELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE-SDKGRLVVGGMDTTIIVF   86 (745)
T ss_pred             EeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceecc-ccCcceEeecccceEEEE
Confidence            355999999888877544 899999999999998644333334567788888877 88865 346679999999999999


Q ss_pred             ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510           85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG  164 (288)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~  164 (288)
                      ...+..   +..++.+|...|.|++-.-+  +. +++|++|.++++|-..+.     ....++|+..|.++..-|.    
T Consensus        87 ~~~~~~---P~~~LkgH~snVC~ls~~~~--~~-~iSgSWD~TakvW~~~~l-----~~~l~gH~asVWAv~~l~e----  151 (745)
T KOG0301|consen   87 KLSQAE---PLYTLKGHKSNVCSLSIGED--GT-LISGSWDSTAKVWRIGEL-----VYSLQGHTASVWAVASLPE----  151 (745)
T ss_pred             ecCCCC---chhhhhccccceeeeecCCc--Cc-eEecccccceEEecchhh-----hcccCCcchheeeeeecCC----
Confidence            987655   45678899999999985544  33 899999999999976432     1236799999999988876    


Q ss_pred             ceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510          165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR  244 (288)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~  244 (288)
                                 +.++|||+|++||+|.-.      +++.++.+|.+.|+.+++-|+     ..|+|++.||.|+.|++..
T Consensus       152 -----------~~~vTgsaDKtIklWk~~------~~l~tf~gHtD~VRgL~vl~~-----~~flScsNDg~Ir~w~~~g  209 (745)
T KOG0301|consen  152 -----------NTYVTGSADKTIKLWKGG------TLLKTFSGHTDCVRGLAVLDD-----SHFLSCSNDGSIRLWDLDG  209 (745)
T ss_pred             -----------CcEEeccCcceeeeccCC------chhhhhccchhheeeeEEecC-----CCeEeecCCceEEEEeccC
Confidence                       469999999999999853      467789999999999999986     3599999999999999853


Q ss_pred             CCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          245 EGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       245 ~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                          .....+++|.+-|++++..+++..++++++|+++++|+.
T Consensus       210 ----e~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~  248 (745)
T KOG0301|consen  210 ----EVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKK  248 (745)
T ss_pred             ----ceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeec
Confidence                134567899999999999999999999999999999984

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=9.6e-27  Score=196.22  Aligned_cols=237  Identities=22%  Similarity=0.339  Sum_probs=184.0

Q ss_pred             cccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecC
Q 036510            8 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEG   87 (288)
Q Consensus         8 ~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~   87 (288)
                      .+|.+.+.+++.|+||+|||+|+.|..|.||+.+  +.++++.+.+|.+.|.+++|-..  ...|.++|.|++|++|++.
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~--t~ehv~~~~ghr~~V~~L~fr~g--t~~lys~s~Drsvkvw~~~  274 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCD--TLEHVKVFKGHRGAVSSLAFRKG--TSELYSASADRSVKVWSID  274 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCc--ccchhhcccccccceeeeeeecC--ccceeeeecCCceEEEehh
Confidence            3899999999999999999999999999999985  44778889999999999999643  5689999999999999985


Q ss_pred             CCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCcee
Q 036510           88 NSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV  167 (288)
Q Consensus        88 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~  167 (288)
                      ...   ...++.+|.+.|..++...-  .+++..|+.|+++++|++....+    .+..+|...+-|++|-.+       
T Consensus       275 ~~s---~vetlyGHqd~v~~IdaL~r--eR~vtVGgrDrT~rlwKi~eesq----lifrg~~~sidcv~~In~-------  338 (479)
T KOG0299|consen  275 QLS---YVETLYGHQDGVLGIDALSR--ERCVTVGGRDRTVRLWKIPEESQ----LIFRGGEGSIDCVAFIND-------  338 (479)
T ss_pred             HhH---HHHHHhCCccceeeechhcc--cceEEeccccceeEEEeccccce----eeeeCCCCCeeeEEEecc-------
Confidence            432   34567899999999986544  56777888999999999965422    344567777888887654       


Q ss_pred             cccccCCCceeEEeecCCcEEEEEEeCCc--eeeeeeecc------ccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEE
Q 036510          168 GSGFLDPVQKLCSGGCDNTVKVWKLYNGI--WKMDCFPAL------QMHTDWVRDVAWAPNLGLPKSTIASASEDGKVII  239 (288)
Q Consensus       168 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~------~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~i  239 (288)
                              ..++|||.||.|.||++.+..  +..+..+.+      ..+..||+++...|..    .++|+||.+|.||+
T Consensus       339 --------~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s----dL~asGS~~G~vrL  406 (479)
T KOG0299|consen  339 --------EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS----DLLASGSWSGCVRL  406 (479)
T ss_pred             --------cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccC----ceEEecCCCCceEE
Confidence                    359999999999999996531  111111111      1233499999999974    68999999999999


Q ss_pred             EEeecCCCcccceEeec--cccCeEEEEeecCCCEEEEEeC
Q 036510          240 WTVAREGDQWEGKVLHD--FKTPVYRVSWSLTGNILAVADG  278 (288)
Q Consensus       240 w~~~~~~~~~~~~~~~~--~~~~i~~~~~spdg~~l~s~~~  278 (288)
                      |.+..+..  ...++..  +.+.|++++|+++|+.|++|.+
T Consensus       407 W~i~~g~r--~i~~l~~ls~~GfVNsl~f~~sgk~ivagiG  445 (479)
T KOG0299|consen  407 WKIEDGLR--AINLLYSLSLVGFVNSLAFSNSGKRIVAGIG  445 (479)
T ss_pred             EEecCCcc--ccceeeecccccEEEEEEEccCCCEEEEecc
Confidence            99986522  2233332  3578999999999998877743

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=1.6e-28  Score=204.44  Aligned_cols=244  Identities=19%  Similarity=0.277  Sum_probs=190.4

Q ss_pred             ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510            7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE   86 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~   86 (288)
                      +..|++.|..+.|-++...|++|+.|..|++|++..+....+.+|.|..++|+.+.|.++  +..+++++.|+.+++|++
T Consensus       171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~--~~~~iAas~d~~~r~Wnv  248 (459)
T KOG0288|consen  171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSD--NKHVIAASNDKNLRLWNV  248 (459)
T ss_pred             hhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCC--CceEEeecCCCceeeeec
Confidence            457999999999999878999999999999999977655678889999999999999765  889999999999999998


Q ss_pred             CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCce
Q 036510           87 GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGAL  166 (288)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~  166 (288)
                      .+..   ..+++.+|.+.|+++.|....  ..+++|+.|.+|++||++...+...+..    ...+..|.-++       
T Consensus       249 d~~r---~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l~----~S~cnDI~~~~-------  312 (459)
T KOG0288|consen  249 DSLR---LRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVLP----GSQCNDIVCSI-------  312 (459)
T ss_pred             cchh---hhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheeccccc----cccccceEecc-------
Confidence            7654   567889999999999997653  2389999999999999987543222111    11233333221       


Q ss_pred             ecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCC
Q 036510          167 VGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG  246 (288)
Q Consensus       167 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~  246 (288)
                               ..+.||..|++|++||.+.+    ++..+..++. .|.++..++++    ..|++.+.|.++.+.|++...
T Consensus       313 ---------~~~~SgH~DkkvRfwD~Rs~----~~~~sv~~gg-~vtSl~ls~~g----~~lLsssRDdtl~viDlRt~e  374 (459)
T KOG0288|consen  313 ---------SDVISGHFDKKVRFWDIRSA----DKTRSVPLGG-RVTSLDLSMDG----LELLSSSRDDTLKVIDLRTKE  374 (459)
T ss_pred             ---------eeeeecccccceEEEeccCC----ceeeEeecCc-ceeeEeeccCC----eEEeeecCCCceeeeeccccc
Confidence                     45889999999999999876    3344445554 79999999984    568888999999999998542


Q ss_pred             CcccceEeecc--ccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          247 DQWEGKVLHDF--KTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       247 ~~~~~~~~~~~--~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      -. .....-++  ....+.+.|||++.|+|+||.||.|+||++
T Consensus       375 I~-~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v  416 (459)
T KOG0288|consen  375 IR-QTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSV  416 (459)
T ss_pred             EE-EEeeccccccccccceeEECCCCceeeeccCCCcEEEEEc
Confidence            11 00001112  234789999999999999999999999984

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.96  E-value=1.9e-27  Score=195.09  Aligned_cols=205  Identities=23%  Similarity=0.336  Sum_probs=170.6

Q ss_pred             eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC
Q 036510           46 QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD  125 (288)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d  125 (288)
                      +..+.+.+|.+=|.++++.|.  ++.|++||+|++++|||++++.   +..++.+|...|..+++++.  --++.+++.|
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~--n~wf~tgs~DrtikIwDlatg~---LkltltGhi~~vr~vavS~r--HpYlFs~ged  214 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPG--NEWFATGSADRTIKIWDLATGQ---LKLTLTGHIETVRGVAVSKR--HPYLFSAGED  214 (460)
T ss_pred             eehhhhhhccceEEEEeeCCC--ceeEEecCCCceeEEEEcccCe---EEEeecchhheeeeeeeccc--CceEEEecCC
Confidence            456778899999999999653  7899999999999999999875   55678899999999999986  3478899999


Q ss_pred             CcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecc
Q 036510          126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPAL  205 (288)
Q Consensus       126 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  205 (288)
                      +.|+-||+.++.-   .+.+.+|-..|.+++..|.-              .+|+||+.|.++|+||+++.    ..++.+
T Consensus       215 k~VKCwDLe~nkv---IR~YhGHlS~V~~L~lhPTl--------------dvl~t~grDst~RvWDiRtr----~~V~~l  273 (460)
T KOG0285|consen  215 KQVKCWDLEYNKV---IRHYHGHLSGVYCLDLHPTL--------------DVLVTGGRDSTIRVWDIRTR----ASVHVL  273 (460)
T ss_pred             CeeEEEechhhhh---HHHhccccceeEEEeccccc--------------eeEEecCCcceEEEeeeccc----ceEEEe
Confidence            9999999986532   23456888999999999976              78999999999999999986    467889


Q ss_pred             ccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEe
Q 036510          206 QMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLW  285 (288)
Q Consensus       206 ~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w  285 (288)
                      .||+.+|.+|.+.|..    -++++||.|++|++||+...+   ....+.-|+..+.+++.+|.-..||+++.|+ |+-|
T Consensus       274 ~GH~~~V~~V~~~~~d----pqvit~S~D~tvrlWDl~agk---t~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w  345 (460)
T KOG0285|consen  274 SGHTNPVASVMCQPTD----PQVITGSHDSTVRLWDLRAGK---TMITLTHHKKSVRALCLHPKENLFASASPDN-IKQW  345 (460)
T ss_pred             cCCCCcceeEEeecCC----CceEEecCCceEEEeeeccCc---eeEeeecccceeeEEecCCchhhhhccCCcc-ceec
Confidence            9999999999999863    369999999999999998642   2234455677899999999999999987754 5555


Q ss_pred             E
Q 036510          286 E  286 (288)
Q Consensus       286 ~  286 (288)
                      +
T Consensus       346 ~  346 (460)
T KOG0285|consen  346 K  346 (460)
T ss_pred             c
Confidence            5

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.95  E-value=5.3e-27  Score=193.49  Aligned_cols=216  Identities=23%  Similarity=0.478  Sum_probs=169.7

Q ss_pred             eccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC-------------CceEEeEEeecCCCceeEEEeccCCCCeE
Q 036510           52 SGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS-------------NEWIKDHVFEDHKSSVNSIDWAPHELGLC  118 (288)
Q Consensus        52 ~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~-------------~~~~~~~~~~~h~~~v~~l~~~p~~~~~~  118 (288)
                      -+|.+.++.++-++-.+..+.++.+..|.|+||++...             .....+.++.+|.+.-+.|+|+|-..+ .
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g-~  226 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG-R  226 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc-c
Confidence            36888888888766445678899999999999997421             112344567889999999999996544 4


Q ss_pred             EEEEeCCCcEEEEeecCCCCeeeE-EeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCce
Q 036510          119 LACGSSDGNISVFTARADGGWDTS-RIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIW  197 (288)
Q Consensus       119 l~sg~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  197 (288)
                      |++|.--+.|++|...+ +.|..- ....+|+..|..+.|||...             ++|+|+|+|++|+|||++.++.
T Consensus       227 LlsGDc~~~I~lw~~~~-g~W~vd~~Pf~gH~~SVEDLqWSptE~-------------~vfaScS~DgsIrIWDiRs~~~  292 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPST-GSWKVDQRPFTGHTKSVEDLQWSPTED-------------GVFASCSCDGSIRIWDIRSGPK  292 (440)
T ss_pred             cccCccccceEeeeecc-CceeecCccccccccchhhhccCCccC-------------ceEEeeecCceEEEEEecCCCc
Confidence            78887788999999877 456432 23457999999999999874             7899999999999999998743


Q ss_pred             eeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecC-CCEEEEE
Q 036510          198 KMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLT-GNILAVA  276 (288)
Q Consensus       198 ~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spd-g~~l~s~  276 (288)
                      +. ++ ..+.|..-|+.|+|+...    .+||+|++||+++|||++.-+.......++-|..||+++.|+|. ...|+++
T Consensus       293 ~~-~~-~~kAh~sDVNVISWnr~~----~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaas  366 (440)
T KOG0302|consen  293 KA-AV-STKAHNSDVNVISWNRRE----PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAAS  366 (440)
T ss_pred             cc-ee-EeeccCCceeeEEccCCc----ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEec
Confidence            32 22 237899999999999864    38999999999999999864322223455667899999999995 5778999


Q ss_pred             eCCCcEEEeEcC
Q 036510          277 DGNNNVTLWEEA  288 (288)
Q Consensus       277 ~~d~~v~~w~~~  288 (288)
                      ++|+.|.|||++
T Consensus       367 g~D~QitiWDls  378 (440)
T KOG0302|consen  367 GEDNQITIWDLS  378 (440)
T ss_pred             cCCCcEEEEEee
Confidence            999999999963

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=2.7e-27  Score=197.17  Aligned_cols=240  Identities=25%  Similarity=0.276  Sum_probs=182.6

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      .+.|-.+.|+.+.|.+++++++++++|+.+++|+++.  .+...+|.||++.|+++.|...  ...+++|+.|.++|+||
T Consensus       214 tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~--~r~~~TLsGHtdkVt~ak~~~~--~~~vVsgs~DRtiK~WD  289 (459)
T KOG0288|consen  214 TLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS--LRLRHTLSGHTDKVTAAKFKLS--HSRVVSGSADRTIKLWD  289 (459)
T ss_pred             hhhccCCCcceeeecCCCceEEeecCCCceeeeeccc--hhhhhhhcccccceeeehhhcc--ccceeeccccchhhhhh
Confidence            4556778899999999999999999999999999964  3668899999999999999753  34499999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      +....+..  ..+  ....++.+..++    ..+++|..|++|++||.+......   ....+ +.|+++..++++    
T Consensus       290 l~k~~C~k--t~l--~~S~cnDI~~~~----~~~~SgH~DkkvRfwD~Rs~~~~~---sv~~g-g~vtSl~ls~~g----  353 (459)
T KOG0288|consen  290 LQKAYCSK--TVL--PGSQCNDIVCSI----SDVISGHFDKKVRFWDIRSADKTR---SVPLG-GRVTSLDLSMDG----  353 (459)
T ss_pred             hhhhheec--ccc--ccccccceEecc----eeeeecccccceEEEeccCCceee---EeecC-cceeeEeeccCC----
Confidence            98755321  122  233455555443    357899999999999998764322   12223 379999988887    


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeec----cccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEE
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPA----LQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT  241 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~  241 (288)
                                ..|.+++.|.++++.|+++..-  .....    ..+|.  .+.+.|||++    .|+|+||.||.|+||+
T Consensus       354 ----------~~lLsssRDdtl~viDlRt~eI--~~~~sA~g~k~asD--wtrvvfSpd~----~YvaAGS~dgsv~iW~  415 (459)
T KOG0288|consen  354 ----------LELLSSSRDDTLKVIDLRTKEI--RQTFSAEGFKCASD--WTRVVFSPDG----SYVAAGSADGSVYIWS  415 (459)
T ss_pred             ----------eEEeeecCCCceeeeecccccE--EEEeeccccccccc--cceeEECCCC----ceeeeccCCCcEEEEE
Confidence                      5677789999999999987521  11111    12333  6889999984    7899999999999999


Q ss_pred             eecCCCcccceEeecccc--CeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          242 VAREGDQWEGKVLHDFKT--PVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~--~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      +...+  .+ ..++....  .|++++|+|.|..+++++.++.+++|.
T Consensus       416 v~tgK--lE-~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  416 VFTGK--LE-KVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             ccCce--EE-EEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            87642  22 22233233  599999999999999999999999994

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.95  E-value=7.4e-26  Score=186.02  Aligned_cols=258  Identities=19%  Similarity=0.276  Sum_probs=191.0

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      .++||.+.|.++.|+.+|.+||+|+.+|.|+||+...+  .....+..--..+-=++|.|  -+.+|+.|+.||.+=+|.
T Consensus       101 eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg--~~~~~~~~e~~dieWl~WHp--~a~illAG~~DGsvWmw~  176 (399)
T KOG0296|consen  101 ELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG--GEQWKLDQEVEDIEWLKWHP--RAHILLAGSTDGSVWMWQ  176 (399)
T ss_pred             EecCCCCceEEEEEccCceEEEecCCCccEEEEEcccC--ceEEEeecccCceEEEEecc--cccEEEeecCCCcEEEEE
Confidence            46799999999999999999999999999999998644  33444443344455577754  489999999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCC---
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTA---  162 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~---  162 (288)
                      +.++.   ..+.+++|..++++=.|.|+  ++.+++|..||+|++|+.+++..+......+  .....++.++..+.   
T Consensus       177 ip~~~---~~kv~~Gh~~~ct~G~f~pd--GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e--~~~~~~~~~~~~~~~~~  249 (399)
T KOG0296|consen  177 IPSQA---LCKVMSGHNSPCTCGEFIPD--GKRILTGYDDGTIIVWNPKTGQPLHKITQAE--GLELPCISLNLAGSTLT  249 (399)
T ss_pred             CCCcc---eeeEecCCCCCcccccccCC--CceEEEEecCceEEEEecCCCceeEEecccc--cCcCCccccccccceeE
Confidence            87643   45678999999999999998  7889999999999999998765433221000  00111111111100   


Q ss_pred             --------------CCcee----------------------cccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccc
Q 036510          163 --------------PGALV----------------------GSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQ  206 (288)
Q Consensus       163 --------------~~~~~----------------------~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  206 (288)
                                    .+..+                      ..++.....+.+.|+-||+|.|||+....    . +..-
T Consensus       250 ~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~----~-R~~c  324 (399)
T KOG0296|consen  250 KGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST----L-RHIC  324 (399)
T ss_pred             eccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch----h-heec
Confidence                          01100                      11222334578899999999999997642    1 1223


Q ss_pred             cCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          207 MHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       207 ~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      .|...|..+.|-++     .+|++++.|++|++||.+..+   .+-...+|..+|...+++|++++++++|.|++.+|++
T Consensus       325 ~he~~V~~l~w~~t-----~~l~t~c~~g~v~~wDaRtG~---l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~  396 (399)
T KOG0296|consen  325 EHEDGVTKLKWLNT-----DYLLTACANGKVRQWDARTGQ---LKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE  396 (399)
T ss_pred             cCCCceEEEEEcCc-----chheeeccCceEEeeeccccc---eEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence            47778999999884     479999999999999998653   2345678889999999999999999999999999997


Q ss_pred             c
Q 036510          287 E  287 (288)
Q Consensus       287 ~  287 (288)
                      .
T Consensus       397 v  397 (399)
T KOG0296|consen  397 V  397 (399)
T ss_pred             c
Confidence            5

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.95  E-value=2.1e-27  Score=201.32  Aligned_cols=248  Identities=17%  Similarity=0.278  Sum_probs=193.4

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      .+.||..+|..++|+.+|+.++|+|.|+++++||++  +++++..+.. ...++++.|.++ +.+.|++|+.|+.|+.||
T Consensus       253 tf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtE--TG~~~~~f~~-~~~~~cvkf~pd-~~n~fl~G~sd~ki~~wD  328 (503)
T KOG0282|consen  253 TFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTE--TGQVLSRFHL-DKVPTCVKFHPD-NQNIFLVGGSDKKIRQWD  328 (503)
T ss_pred             hhhcchhhhhhhhccccCCeeeeeecceeeeeeccc--cceEEEEEec-CCCceeeecCCC-CCcEEEEecCCCcEEEEe
Confidence            456999999999999999999999999999999984  5566666642 234577887554 468999999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      +++++   .++.+..|.+.|..+.|-+.  +..+++.+.|++++||+.+.+..+........|+  ..++...|++    
T Consensus       329 iRs~k---vvqeYd~hLg~i~~i~F~~~--g~rFissSDdks~riWe~~~~v~ik~i~~~~~hs--mP~~~~~P~~----  397 (503)
T KOG0282|consen  329 IRSGK---VVQEYDRHLGAILDITFVDE--GRRFISSSDDKSVRIWENRIPVPIKNIADPEMHT--MPCLTLHPNG----  397 (503)
T ss_pred             ccchH---HHHHHHhhhhheeeeEEccC--CceEeeeccCccEEEEEcCCCccchhhcchhhcc--CcceecCCCC----
Confidence            99876   45667789999999999987  6789999999999999988754332211222343  4567777876    


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCc--ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEee
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTD--WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA  243 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~--~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~  243 (288)
                                ..++.-+-|+.|.++.+...- .+.....+.||.-  +-..|.||||+    .+|++|+.||.+.+||.+
T Consensus       398 ----------~~~~aQs~dN~i~ifs~~~~~-r~nkkK~feGh~vaGys~~v~fSpDG----~~l~SGdsdG~v~~wdwk  462 (503)
T KOG0282|consen  398 ----------KWFAAQSMDNYIAIFSTVPPF-RLNKKKRFEGHSVAGYSCQVDFSPDG----RTLCSGDSDGKVNFWDWK  462 (503)
T ss_pred             ----------CeehhhccCceEEEEeccccc-ccCHhhhhcceeccCceeeEEEcCCC----CeEEeecCCccEEEeech
Confidence                      678888889999998865431 2223345677743  45678999985    789999999999999988


Q ss_pred             cCCCcccceEeeccccCeEEEEeecCC-CEEEEEeCCCcEEEeE
Q 036510          244 REGDQWEGKVLHDFKTPVYRVSWSLTG-NILAVADGNNNVTLWE  286 (288)
Q Consensus       244 ~~~~~~~~~~~~~~~~~i~~~~~spdg-~~l~s~~~d~~v~~w~  286 (288)
                      ..+   ....++.|..++..+.|+|-. ..+|+++-||.|++|+
T Consensus       463 t~k---l~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  463 TTK---LVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             hhh---hhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            643   234456677899999999975 6899999999999996

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=5.6e-27  Score=190.36  Aligned_cols=246  Identities=16%  Similarity=0.220  Sum_probs=193.6

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCc------eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCC
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTS------QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDG   79 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~   79 (288)
                      +..|...-+.|..|||||+||++||.||.|.+|+...+..      +.-..+--|.++|.++.|+++  .+.|++|+.||
T Consensus       208 IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD--sEMlAsGsqDG  285 (508)
T KOG0275|consen  208 IKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD--SEMLASGSQDG  285 (508)
T ss_pred             eecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc--HHHhhccCcCC
Confidence            4557778888999999999999999999999999854321      111234458899999999986  78999999999


Q ss_pred             cEEEeecCCCCceEEeEEee-cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeC
Q 036510           80 TVIIWKEGNSNEWIKDHVFE-DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWA  158 (288)
Q Consensus        80 ~v~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~  158 (288)
                      .|++|.+.++.+   .+.+. .|...|+|++|+.|+  ..+++++.|.++++.-++.+..+   +...+|..-|....|.
T Consensus       286 kIKvWri~tG~C---lRrFdrAHtkGvt~l~FSrD~--SqiLS~sfD~tvRiHGlKSGK~L---KEfrGHsSyvn~a~ft  357 (508)
T KOG0275|consen  286 KIKVWRIETGQC---LRRFDRAHTKGVTCLSFSRDN--SQILSASFDQTVRIHGLKSGKCL---KEFRGHSSYVNEATFT  357 (508)
T ss_pred             cEEEEEEecchH---HHHhhhhhccCeeEEEEccCc--chhhcccccceEEEeccccchhH---HHhcCccccccceEEc
Confidence            999999988874   33343 799999999999984  46789999999999888776443   3346899899999998


Q ss_pred             CCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccc--cCCcceEEEEecCCCCCCCcEEEEEeCCCc
Q 036510          159 PSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQ--MHTDWVRDVAWAPNLGLPKSTIASASEDGK  236 (288)
Q Consensus       159 p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~  236 (288)
                      +++              +.+++++.|++|++|+..+.    +|..+++  +-..+|++|..-|..   +..++.+...++
T Consensus       358 ~dG--------------~~iisaSsDgtvkvW~~Ktt----eC~~Tfk~~~~d~~vnsv~~~PKn---peh~iVCNrsnt  416 (508)
T KOG0275|consen  358 DDG--------------HHIISASSDGTVKVWHGKTT----ECLSTFKPLGTDYPVNSVILLPKN---PEHFIVCNRSNT  416 (508)
T ss_pred             CCC--------------CeEEEecCCccEEEecCcch----hhhhhccCCCCcccceeEEEcCCC---CceEEEEcCCCe
Confidence            887              78999999999999999876    4555553  445579999998864   456888999999


Q ss_pred             EEEEEeecCCCcccceEee-c--cccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          237 VIIWTVAREGDQWEGKVLH-D--FKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       237 i~iw~~~~~~~~~~~~~~~-~--~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      |.|-+++-.    ..+.+. +  -++.-.++..||.|.++...+.|+.+..+.
T Consensus       417 v~imn~qGQ----vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~  465 (508)
T KOG0275|consen  417 VYIMNMQGQ----VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFS  465 (508)
T ss_pred             EEEEeccce----EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEE
Confidence            999987621    111111 1  124567889999999999999999888775

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=3.5e-26  Score=192.84  Aligned_cols=247  Identities=21%  Similarity=0.302  Sum_probs=191.9

Q ss_pred             cccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCce---------------eeEEE-eccccCeEEEEecCCCCCCE
Q 036510            8 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQ---------------HLAKL-SGHKGAVWEVAWAHPKFGSI   71 (288)
Q Consensus         8 ~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~---------------~~~~~-~~h~~~v~~~~~~~~~~~~~   71 (288)
                      -.|.-.|.++.++|++++.++++.|++|.=|++..+...               .+..- .+|...+.+++.+++  +.+
T Consensus       139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D--gky  216 (479)
T KOG0299|consen  139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD--GKY  216 (479)
T ss_pred             ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC--CcE
Confidence            378999999999999999999999999999987432100               00011 378888999999865  999


Q ss_pred             EEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCC
Q 036510           72 LASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVG  151 (288)
Q Consensus        72 l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  151 (288)
                      |++|+.|..|.||+..+.+   .++.+++|++.|.+++|-..  ...+.+++.|+++++|++....   ....+-+|+..
T Consensus       217 latgg~d~~v~Iw~~~t~e---hv~~~~ghr~~V~~L~fr~g--t~~lys~s~Drsvkvw~~~~~s---~vetlyGHqd~  288 (479)
T KOG0299|consen  217 LATGGRDRHVQIWDCDTLE---HVKVFKGHRGAVSSLAFRKG--TSELYSASADRSVKVWSIDQLS---YVETLYGHQDG  288 (479)
T ss_pred             EEecCCCceEEEecCcccc---hhhcccccccceeeeeeecC--ccceeeeecCCceEEEehhHhH---HHHHHhCCccc
Confidence            9999999999999987765   45668999999999999654  3357889999999999987532   22344589888


Q ss_pred             eeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEE
Q 036510          152 VTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASA  231 (288)
Q Consensus       152 v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~  231 (288)
                      |..|+-....              +.+..|+.|+++++|++.+..     .-.+.+|.+.+.||+|-.+     ..+++|
T Consensus       289 v~~IdaL~re--------------R~vtVGgrDrT~rlwKi~ees-----qlifrg~~~sidcv~~In~-----~HfvsG  344 (479)
T KOG0299|consen  289 VLGIDALSRE--------------RCVTVGGRDRTVRLWKIPEES-----QLIFRGGEGSIDCVAFIND-----EHFVSG  344 (479)
T ss_pred             eeeechhccc--------------ceEEeccccceeEEEeccccc-----eeeeeCCCCCeeeEEEecc-----cceeec
Confidence            9888654332              556677799999999995532     2245788889999999876     469999


Q ss_pred             eCCCcEEEEEeecCCCcccceEeecc---------ccCeEEEEeecCCCEEEEEeCCCcEEEeEcC
Q 036510          232 SEDGKVIIWTVAREGDQWEGKVLHDF---------KTPVYRVSWSLTGNILAVADGNNNVTLWEEA  288 (288)
Q Consensus       232 s~D~~i~iw~~~~~~~~~~~~~~~~~---------~~~i~~~~~spdg~~l~s~~~d~~v~~w~~~  288 (288)
                      |+||.|.+|++.+++........|+.         ..+|++++-.|...++|+||.+|.||||.++
T Consensus       345 SdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~  410 (479)
T KOG0299|consen  345 SDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIE  410 (479)
T ss_pred             cCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEec
Confidence            99999999999865432222222321         1289999999999999999999999999864

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.5e-26  Score=194.96  Aligned_cols=241  Identities=17%  Similarity=0.228  Sum_probs=187.7

Q ss_pred             ccceEEEEEcCCCCE-EEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC
Q 036510           11 EDTVHDVAMDYYGKR-LATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS   89 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~-l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~   89 (288)
                      ...|.+++|+|.-.+ +|.+| ...+.||+...  .....++.-.+..|+++.|-+|  |.+|+.|.+.|.|+|+|+.+.
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~--~~~~k~~srFk~~v~s~~fR~D--G~LlaaGD~sG~V~vfD~k~r  100 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVT--RSVRKTFSRFKDVVYSVDFRSD--GRLLAAGDESGHVKVFDMKSR  100 (487)
T ss_pred             cCcceeEecCCCCCCceEEec-ccEEEEEecch--hhhhhhHHhhccceeEEEeecC--CeEEEccCCcCcEEEeccccH
Confidence            468999999996433 33333 24678887632  2345556667888999999754  999999999999999996432


Q ss_pred             CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecc
Q 036510           90 NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS  169 (288)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~  169 (288)
                      .   ..+.+.+|..+|..+.|+|.+ +..+++|+.|+.+++||+.+..   ......+|++-|.+.+|+|...       
T Consensus       101 ~---iLR~~~ah~apv~~~~f~~~d-~t~l~s~sDd~v~k~~d~s~a~---v~~~l~~htDYVR~g~~~~~~~-------  166 (487)
T KOG0310|consen  101 V---ILRQLYAHQAPVHVTKFSPQD-NTMLVSGSDDKVVKYWDLSTAY---VQAELSGHTDYVRCGDISPAND-------  166 (487)
T ss_pred             H---HHHHHhhccCceeEEEecccC-CeEEEecCCCceEEEEEcCCcE---EEEEecCCcceeEeeccccCCC-------
Confidence            1   234577899999999999986 6779999999999999997653   2335679999999999999763       


Q ss_pred             cccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcc
Q 036510          170 GFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQW  249 (288)
Q Consensus       170 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~  249 (288)
                            +.++|||.|+.||+||++...   ..+.+ -.|..+|.+|.|-|.    +++||+++. +.+|+||+....+. 
T Consensus       167 ------hivvtGsYDg~vrl~DtR~~~---~~v~e-lnhg~pVe~vl~lps----gs~iasAgG-n~vkVWDl~~G~ql-  230 (487)
T KOG0310|consen  167 ------HIVVTGSYDGKVRLWDTRSLT---SRVVE-LNHGCPVESVLALPS----GSLIASAGG-NSVKVWDLTTGGQL-  230 (487)
T ss_pred             ------eEEEecCCCceEEEEEeccCC---ceeEE-ecCCCceeeEEEcCC----CCEEEEcCC-CeEEEEEecCCcee-
Confidence                  789999999999999998752   12223 348889999999996    367877765 48999999854321 


Q ss_pred             cceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          250 EGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       250 ~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                       ......|.+.|+|+.+.-+++.|++|+.|+.|++||+
T Consensus       231 -l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~  267 (487)
T KOG0310|consen  231 -LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDT  267 (487)
T ss_pred             -hhhhhcccceEEEEEeecCCceEeecccccceEEEEc
Confidence             2233447889999999999999999999999999984

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=1.3e-25  Score=188.32  Aligned_cols=241  Identities=21%  Similarity=0.317  Sum_probs=191.2

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCc
Q 036510           12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNE   91 (288)
Q Consensus        12 ~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~   91 (288)
                      ..+..+...+..+.+++|+.|+++-++|...  .+.+.++.||...|+.+.|+++  ...++++|.|..|+||......+
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s--~q~l~~~~Gh~kki~~v~~~~~--~~~v~~aSad~~i~vws~~~~s~  295 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPS--NQILATLKGHTKKITSVKFHKD--LDTVITASADEIIRVWSVPLSSE  295 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecch--hhhhhhccCcceEEEEEEeccc--hhheeecCCcceEEeeccccccC
Confidence            4556666666667899999999999999753  4668899999999999999764  67889999999999998765542


Q ss_pred             eEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccc
Q 036510           92 WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGF  171 (288)
Q Consensus        92 ~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~  171 (288)
                         ......|..+|+.+..||.  +.+++++++|++..+.|++.+..+-.. ..+.....+++..|.|++          
T Consensus       296 ---~~~~~~h~~~V~~ls~h~t--geYllsAs~d~~w~Fsd~~~g~~lt~v-s~~~s~v~~ts~~fHpDg----------  359 (506)
T KOG0289|consen  296 ---PTSSRPHEEPVTGLSLHPT--GEYLLSASNDGTWAFSDISSGSQLTVV-SDETSDVEYTSAAFHPDG----------  359 (506)
T ss_pred             ---ccccccccccceeeeeccC--CcEEEEecCCceEEEEEccCCcEEEEE-eeccccceeEEeeEcCCc----------
Confidence               2334569999999999997  789999999999999999887654322 222344668999999998          


Q ss_pred             cCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccc
Q 036510          172 LDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEG  251 (288)
Q Consensus       172 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~  251 (288)
                          ..|.+|..|+.++|||+.++.    -...+.+|.++|.+++|+.+    +.++|++++|+.|++||+++-...  .
T Consensus       360 ----Lifgtgt~d~~vkiwdlks~~----~~a~Fpght~~vk~i~FsEN----GY~Lat~add~~V~lwDLRKl~n~--k  425 (506)
T KOG0289|consen  360 ----LIFGTGTPDGVVKIWDLKSQT----NVAKFPGHTGPVKAISFSEN----GYWLATAADDGSVKLWDLRKLKNF--K  425 (506)
T ss_pred             ----eEEeccCCCceEEEEEcCCcc----ccccCCCCCCceeEEEeccC----ceEEEEEecCCeEEEEEehhhccc--c
Confidence                679999999999999998763    35567889999999999998    479999999999999999864321  1


Q ss_pred             eEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          252 KVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       252 ~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      +..-+-...+.++.|.+.|++|+.++.|=.|++++
T Consensus       426 t~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  426 TIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK  460 (506)
T ss_pred             eeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence            21112223699999999999999997665555544

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.3e-26  Score=191.55  Aligned_cols=234  Identities=22%  Similarity=0.330  Sum_probs=181.9

Q ss_pred             CCCEEEEeeCCCcEEEEEeCCCC-ceeeEE------------------EeccccCeEEEEecCCCCCCEEEEeeCCCcEE
Q 036510           22 YGKRLATASSDYSIKIIGVGNNT-SQHLAK------------------LSGHKGAVWEVAWAHPKFGSILASCSFDGTVI   82 (288)
Q Consensus        22 ~g~~l~s~~~d~~i~lwd~~~~~-~~~~~~------------------~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~   82 (288)
                      .|+|+|-|..|..|.|||++-.. ..+..+                  ..+|++.|-++.|... ..++|+|||.|.+|+
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~-~~nVLaSgsaD~TV~  269 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN-FRNVLASGSADKTVK  269 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc-cceeEEecCCCceEE
Confidence            37899999999999999986211 111122                  2379999999998865 467999999999999


Q ss_pred             EeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCee-eEEeeccCCCCeeEEEeCCCC
Q 036510           83 IWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWD-TSRIDQAHPVGVTSVSWAPST  161 (288)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~v~~i~~~p~~  161 (288)
                      +||+..++   +..++..|.++|.+++|+|.. ..+|++|+.|++++++|.|...... .+.    ....|..+.|.|..
T Consensus       270 lWD~~~g~---p~~s~~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R~~~~s~~~wk----~~g~VEkv~w~~~s  341 (463)
T KOG0270|consen  270 LWDVDTGK---PKSSITHHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCRDPSNSGKEWK----FDGEVEKVAWDPHS  341 (463)
T ss_pred             EEEcCCCC---cceehhhcCCceeEEEecCCC-ceEEEeccccceEEeeeccCccccCceEE----eccceEEEEecCCC
Confidence            99998887   445677899999999999986 6779999999999999999533211 112    24568999999987


Q ss_pred             CCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEE
Q 036510          162 APGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT  241 (288)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~  241 (288)
                      .             ..+..+..||+++-+|+|...   +++.++..|.+.|.++++++..   +.+++++|.|+.+++|+
T Consensus       342 e-------------~~f~~~tddG~v~~~D~R~~~---~~vwt~~AHd~~ISgl~~n~~~---p~~l~t~s~d~~Vklw~  402 (463)
T KOG0270|consen  342 E-------------NSFFVSTDDGTVYYFDIRNPG---KPVWTLKAHDDEISGLSVNIQT---PGLLSTASTDKVVKLWK  402 (463)
T ss_pred             c-------------eeEEEecCCceEEeeecCCCC---CceeEEEeccCCcceEEecCCC---CcceeeccccceEEEEe
Confidence            4             567778999999999999853   6778889999999999999874   67899999999999999


Q ss_pred             eecCCCcccceEeeccc---cCeEEEEeecCCC-EEEEEeCCCcEEEeEc
Q 036510          242 VAREGDQWEGKVLHDFK---TPVYRVSWSLTGN-ILAVADGNNNVTLWEE  287 (288)
Q Consensus       242 ~~~~~~~~~~~~~~~~~---~~i~~~~~spdg~-~l~s~~~d~~v~~w~~  287 (288)
                      +....    .+.++++.   +...+.++.|+-. .+|.|+..+-++|||+
T Consensus       403 ~~~~~----~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~  448 (463)
T KOG0270|consen  403 FDVDS----PKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI  448 (463)
T ss_pred             ecCCC----CcccccccccccceeecccCCCcceEEEecCccceEEEeec
Confidence            87432    12223322   2356677888765 4667777778999995

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.95  E-value=8.6e-26  Score=186.38  Aligned_cols=255  Identities=24%  Similarity=0.421  Sum_probs=194.5

Q ss_pred             ccccceEEEEEcCCC--CEEEEeeCCCcEEEEEeCCC--------------CceeeEEEeccccCeEEEEecCCCCCCEE
Q 036510            9 GHEDTVHDVAMDYYG--KRLATASSDYSIKIIGVGNN--------------TSQHLAKLSGHKGAVWEVAWAHPKFGSIL   72 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g--~~l~s~~~d~~i~lwd~~~~--------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l   72 (288)
                      +|.+.++-+.-++-|  .+.++=+..|.|+||++...              ..+.++++.+|...=++|+||+-. -..|
T Consensus       149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~-~g~L  227 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIK-TGRL  227 (440)
T ss_pred             ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccc-cccc
Confidence            688888888877765  55566666799999998421              125688999999999999999743 3468


Q ss_pred             EEeeCCCcEEEeecCCCCceE-EeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCC
Q 036510           73 ASCSFDGTVIIWKEGNSNEWI-KDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVG  151 (288)
Q Consensus        73 ~s~s~d~~v~iwd~~~~~~~~-~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  151 (288)
                      +||..-+.|++|.+.++ .|. ....+.+|...|-.|.|+|.+. .++++|+-|++|+|||+|.+..-.. ...++|+..
T Consensus       228 lsGDc~~~I~lw~~~~g-~W~vd~~Pf~gH~~SVEDLqWSptE~-~vfaScS~DgsIrIWDiRs~~~~~~-~~~kAh~sD  304 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTG-SWKVDQRPFTGHTKSVEDLQWSPTED-GVFASCSCDGSIRIWDIRSGPKKAA-VSTKAHNSD  304 (440)
T ss_pred             ccCccccceEeeeeccC-ceeecCccccccccchhhhccCCccC-ceEEeeecCceEEEEEecCCCccce-eEeeccCCc
Confidence            99999999999998874 442 3345667999999999999874 5699999999999999997632221 223789999


Q ss_pred             eeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEE
Q 036510          152 VTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASA  231 (288)
Q Consensus       152 v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~  231 (288)
                      |.-|+|+...              .+|++|+.||+++|||++.-+.. ..+..++-|..+|++|.|+|..   .+.|+++
T Consensus       305 VNVISWnr~~--------------~lLasG~DdGt~~iwDLR~~~~~-~pVA~fk~Hk~pItsieW~p~e---~s~iaas  366 (440)
T KOG0302|consen  305 VNVISWNRRE--------------PLLASGGDDGTLSIWDLRQFKSG-QPVATFKYHKAPITSIEWHPHE---DSVIAAS  366 (440)
T ss_pred             eeeEEccCCc--------------ceeeecCCCceEEEEEhhhccCC-CcceeEEeccCCeeEEEecccc---CceEEec
Confidence            9999999876              57999999999999999863222 3456778899999999999974   5789999


Q ss_pred             eCCCcEEEEEeecCCC------ccc-------ceEe--eccccCeEEEEeecCC-CEEEEEeCCCcEEEeE
Q 036510          232 SEDGKVIIWTVAREGD------QWE-------GKVL--HDFKTPVYRVSWSLTG-NILAVADGNNNVTLWE  286 (288)
Q Consensus       232 s~D~~i~iw~~~~~~~------~~~-------~~~~--~~~~~~i~~~~~spdg-~~l~s~~~d~~v~~w~  286 (288)
                      +.|..|.|||+....+      ...       ..++  |.-++-+..+.|+++- -++++.+.||. +||.
T Consensus       367 g~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf-nVfk  436 (440)
T KOG0302|consen  367 GEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF-NVFK  436 (440)
T ss_pred             cCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce-eEEE
Confidence            9999999999986432      100       1133  3334678889999985 46666666664 4554

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=7.4e-27  Score=207.63  Aligned_cols=240  Identities=22%  Similarity=0.338  Sum_probs=188.8

Q ss_pred             EEEEEcC-CCCEEEEeeCCCcEEEEEeCCC-CceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCce
Q 036510           15 HDVAMDY-YGKRLATASSDYSIKIIGVGNN-TSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEW   92 (288)
Q Consensus        15 ~~~~~s~-~g~~l~s~~~d~~i~lwd~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~   92 (288)
                      ..|+|.. +.++||+++..|.|.+||+... +.+.+..+..|+..++.+.|.. ....+|+|||.||+||+||++.... 
T Consensus        91 ~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~-tep~iliSGSQDg~vK~~DlR~~~S-  168 (839)
T KOG0269|consen   91 ADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHS-TEPNILISGSQDGTVKCWDLRSKKS-  168 (839)
T ss_pred             hhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeecc-CCccEEEecCCCceEEEEeeecccc-
Confidence            3456664 4689999999999999999642 2355678899999999999965 4578999999999999999987653 


Q ss_pred             EEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceeccccc
Q 036510           93 IKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFL  172 (288)
Q Consensus        93 ~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~  172 (288)
                        ..++......|..+.|+|.. +..++++...|++++||+|....+.  ....+|+++|.++.|+|+.           
T Consensus       169 --~~t~~~nSESiRDV~fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~--~k~~AH~GpV~c~nwhPnr-----------  232 (839)
T KOG0269|consen  169 --KSTFRSNSESIRDVKFSPGY-GNKFASIHDSGYLQLWDLRQPDRCE--KKLTAHNGPVLCLNWHPNR-----------  232 (839)
T ss_pred             --cccccccchhhhceeeccCC-CceEEEecCCceEEEeeccCchhHH--HHhhcccCceEEEeecCCC-----------
Confidence              23444566789999999986 7789999999999999999865542  3456899999999999976           


Q ss_pred             CCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeC--CCcEEEEEeecCCCccc
Q 036510          173 DPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE--DGKVIIWTVAREGDQWE  250 (288)
Q Consensus       173 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~--D~~i~iw~~~~~~~~~~  250 (288)
                         .+|+|||.|++|||||+..+..  +..+++. -..+|.+|.|-|..   ...||+++.  |-.|+|||++.+.-+  
T Consensus       233 ---~~lATGGRDK~vkiWd~t~~~~--~~~~tIn-Tiapv~rVkWRP~~---~~hLAtcsmv~dtsV~VWDvrRPYIP--  301 (839)
T KOG0269|consen  233 ---EWLATGGRDKMVKIWDMTDSRA--KPKHTIN-TIAPVGRVKWRPAR---SYHLATCSMVVDTSVHVWDVRRPYIP--  301 (839)
T ss_pred             ---ceeeecCCCccEEEEeccCCCc--cceeEEe-ecceeeeeeeccCc---cchhhhhhccccceEEEEeecccccc--
Confidence               7899999999999999975421  2222222 24579999999985   467888875  778999999976433  


Q ss_pred             ceEeeccccCeEEEEeec-CCCEEEEEeCCCcEE
Q 036510          251 GKVLHDFKTPVYRVSWSL-TGNILAVADGNNNVT  283 (288)
Q Consensus       251 ~~~~~~~~~~i~~~~~sp-dg~~l~s~~~d~~v~  283 (288)
                      ...+.+|...++.++|-. |...|.+++.|++|.
T Consensus       302 ~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~  335 (839)
T KOG0269|consen  302 YATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL  335 (839)
T ss_pred             ceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence            244567778889999965 556789999999874

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=2.5e-25  Score=179.35  Aligned_cols=245  Identities=22%  Similarity=0.342  Sum_probs=174.2

Q ss_pred             CCCCcc--ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC
Q 036510            1 MPPQKI--ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD   78 (288)
Q Consensus         1 ~~~~~~--~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d   78 (288)
                      |++++.  ...-++.|..++|+|.++.|+.+++||++++||+....   +...-.|..++.+++|-.   ...+++|+.|
T Consensus         1 ~~~~~~~l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~---l~~~~~~~~plL~c~F~d---~~~~~~G~~d   74 (323)
T KOG1036|consen    1 MSPNEFELENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS---LKLKFKHGAPLLDCAFAD---ESTIVTGGLD   74 (323)
T ss_pred             CCccccccCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchh---hhhheecCCceeeeeccC---CceEEEeccC
Confidence            455543  33458999999999988899999999999999996542   222335899999999953   5789999999


Q ss_pred             CcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCC---eee-------------E
Q 036510           79 GTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGG---WDT-------------S  142 (288)
Q Consensus        79 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~---~~~-------------~  142 (288)
                      |.|+.+|+..++.    ..+..|..+|.|+...+-  ...+++|++|++|++||.|....   .+.             .
T Consensus        75 g~vr~~Dln~~~~----~~igth~~~i~ci~~~~~--~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~L  148 (323)
T KOG1036|consen   75 GQVRRYDLNTGNE----DQIGTHDEGIRCIEYSYE--VGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRL  148 (323)
T ss_pred             ceEEEEEecCCcc----eeeccCCCceEEEEeecc--CCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEE
Confidence            9999999976653    345679999999999975  34689999999999999983211   000             0


Q ss_pred             Ee----------------------eccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCC-----
Q 036510          143 RI----------------------DQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNG-----  195 (288)
Q Consensus       143 ~~----------------------~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-----  195 (288)
                      .+                      ....+.+++++...|+.              .-++.+|.||.|.+=.....     
T Consensus       149 vVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~--------------eGy~~sSieGRVavE~~d~s~~~~s  214 (323)
T KOG1036|consen  149 VVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNG--------------EGYVVSSIEGRVAVEYFDDSEEAQS  214 (323)
T ss_pred             EEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCC--------------CceEEEeecceEEEEccCCchHHhh
Confidence            00                      00112334555555532              33677888998876333222     


Q ss_pred             -ceeeeeeeccccC---CcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCC
Q 036510          196 -IWKMDCFPALQMH---TDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGN  271 (288)
Q Consensus       196 -~~~~~~~~~~~~h---~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~  271 (288)
                       .+.++|.......   -.+|++++|+|-.    ++||||+.||.|-+||+..++   ....++++...|.+++|+-||.
T Consensus       215 kkyaFkCHr~~~~~~~~~yPVNai~Fhp~~----~tfaTgGsDG~V~~Wd~~~rK---rl~q~~~~~~SI~slsfs~dG~  287 (323)
T KOG1036|consen  215 KKYAFKCHRLSEKDTEIIYPVNAIAFHPIH----GTFATGGSDGIVNIWDLFNRK---RLKQLAKYETSISSLSFSMDGS  287 (323)
T ss_pred             hceeEEeeecccCCceEEEEeceeEecccc----ceEEecCCCceEEEccCcchh---hhhhccCCCCceEEEEeccCCC
Confidence             2233443322211   2279999999953    589999999999999998643   2344567777899999999999


Q ss_pred             EEEEEeC
Q 036510          272 ILAVADG  278 (288)
Q Consensus       272 ~l~s~~~  278 (288)
                      .||.|++
T Consensus       288 ~LAia~s  294 (323)
T KOG1036|consen  288 LLAIASS  294 (323)
T ss_pred             eEEEEec
Confidence            9999975

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=5e-25  Score=184.78  Aligned_cols=248  Identities=20%  Similarity=0.246  Sum_probs=193.4

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      ++.||+..|..+.|+++...+++++.|..|++|.+...  ........|..+|+.+.-.+  .|+||+++|.|++....|
T Consensus       256 ~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~--s~~~~~~~h~~~V~~ls~h~--tgeYllsAs~d~~w~Fsd  331 (506)
T KOG0289|consen  256 TLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS--SEPTSSRPHEEPVTGLSLHP--TGEYLLSASNDGTWAFSD  331 (506)
T ss_pred             hccCcceEEEEEEeccchhheeecCCcceEEeeccccc--cCccccccccccceeeeecc--CCcEEEEecCCceEEEEE
Confidence            57799999999999999999999999999999988543  34555678999999999743  489999999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      ++++...... .-....-.+++..||||  +.++++|..|+.++|||++.+..   .....+|..+|..|+|+.++    
T Consensus       332 ~~~g~~lt~v-s~~~s~v~~ts~~fHpD--gLifgtgt~d~~vkiwdlks~~~---~a~Fpght~~vk~i~FsENG----  401 (506)
T KOG0289|consen  332 ISSGSQLTVV-SDETSDVEYTSAAFHPD--GLIFGTGTPDGVVKIWDLKSQTN---VAKFPGHTGPVKAISFSENG----  401 (506)
T ss_pred             ccCCcEEEEE-eeccccceeEEeeEcCC--ceEEeccCCCceEEEEEcCCccc---cccCCCCCCceeEEEeccCc----
Confidence            9887643221 11111234899999999  78999999999999999987643   23445799999999999887    


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccc-cCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQ-MHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR  244 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~  244 (288)
                                .+|+++..|+.|++||++.-.    -.+++. .-...|.+++|.+.    +++++.++.|=.|.+++  +
T Consensus       402 ----------Y~Lat~add~~V~lwDLRKl~----n~kt~~l~~~~~v~s~~fD~S----Gt~L~~~g~~l~Vy~~~--k  461 (506)
T KOG0289|consen  402 ----------YWLATAADDGSVKLWDLRKLK----NFKTIQLDEKKEVNSLSFDQS----GTYLGIAGSDLQVYICK--K  461 (506)
T ss_pred             ----------eEEEEEecCCeEEEEEehhhc----ccceeeccccccceeEEEcCC----CCeEEeecceeEEEEEe--c
Confidence                      889999999999999998642    222221 11225899999886    47898887775555554  3


Q ss_pred             CCCcccc-eEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          245 EGDQWEG-KVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       245 ~~~~~~~-~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ....|.. ..++.+.+..+.+.|...-+++++++-|.+++|+.+
T Consensus       462 ~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  462 KTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            3223322 344566678899999999999999999999999864

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=2.7e-27  Score=209.06  Aligned_cols=236  Identities=22%  Similarity=0.363  Sum_probs=196.8

Q ss_pred             ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510            7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE   86 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~   86 (288)
                      +..|...|.++..-..++.+++|+.|..+.||.+..+  -.+..|.+|..+|-++.|+.+  ..+|+.|+++|+||+||+
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp--~~i~S~~~hespIeSl~f~~~--E~LlaagsasgtiK~wDl   99 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP--NAITSLTGHESPIESLTFDTS--ERLLAAGSASGTIKVWDL   99 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCceeeccccccCC--chhheeeccCCcceeeecCcc--hhhhcccccCCceeeeeh
Confidence            4478889999988667899999999999999987543  335568999999999999764  679999999999999999


Q ss_pred             CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCce
Q 036510           87 GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGAL  166 (288)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~  166 (288)
                      ..+.   ..+++.+|...+.++.|||-  +.+.|+|+.|..+.+||++..++.   ..+.+|+..+..+.|+|++     
T Consensus       100 eeAk---~vrtLtgh~~~~~sv~f~P~--~~~~a~gStdtd~~iwD~Rk~Gc~---~~~~s~~~vv~~l~lsP~G-----  166 (825)
T KOG0267|consen  100 EEAK---IVRTLTGHLLNITSVDFHPY--GEFFASGSTDTDLKIWDIRKKGCS---HTYKSHTRVVDVLRLSPDG-----  166 (825)
T ss_pred             hhhh---hhhhhhccccCcceeeeccc--eEEeccccccccceehhhhccCce---eeecCCcceeEEEeecCCC-----
Confidence            8665   45678899999999999997  678899999999999999976653   3445699899999999997     


Q ss_pred             ecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCC
Q 036510          167 VGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG  246 (288)
Q Consensus       167 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~  246 (288)
                               ..+++|+.|.+++|||...|    ++...+..|...|.++.|+|..    -++++||.|+++++||++.-.
T Consensus       167 ---------r~v~~g~ed~tvki~d~~ag----k~~~ef~~~e~~v~sle~hp~e----~Lla~Gs~d~tv~f~dletfe  229 (825)
T KOG0267|consen  167 ---------RWVASGGEDNTVKIWDLTAG----KLSKEFKSHEGKVQSLEFHPLE----VLLAPGSSDRTVRFWDLETFE  229 (825)
T ss_pred             ---------ceeeccCCcceeeeeccccc----ccccccccccccccccccCchh----hhhccCCCCceeeeeccceeE
Confidence                     78999999999999999876    5677889999999999999973    579999999999999987321


Q ss_pred             CcccceEeeccccCeEEEEeecCCCEEEEEeCC
Q 036510          247 DQWEGKVLHDFKTPVYRVSWSLTGNILAVADGN  279 (288)
Q Consensus       247 ~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d  279 (288)
                         ........-..|.+.+|+|+|..+++|...
T Consensus       230 ---~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  230 ---VISSGKPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             ---EeeccCCccCCceeeeecCCceeeecCchh
Confidence               111112334579999999999999998653

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=5.3e-25  Score=195.36  Aligned_cols=198  Identities=19%  Similarity=0.254  Sum_probs=158.7

Q ss_pred             CeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCC
Q 036510           57 AVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARAD  136 (288)
Q Consensus        57 ~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~  136 (288)
                      -+.+..|.|-  +.+++.|...|.+.++|+....   ...++..|.+.|++++..||+  ..+++|+.|++|++||+...
T Consensus       414 y~l~~~Fvpg--d~~Iv~G~k~Gel~vfdlaS~~---l~Eti~AHdgaIWsi~~~pD~--~g~vT~saDktVkfWdf~l~  486 (888)
T KOG0306|consen  414 YILASKFVPG--DRYIVLGTKNGELQVFDLASAS---LVETIRAHDGAIWSISLSPDN--KGFVTGSADKTVKFWDFKLV  486 (888)
T ss_pred             cEEEEEecCC--CceEEEeccCCceEEEEeehhh---hhhhhhccccceeeeeecCCC--CceEEecCCcEEEEEeEEEE
Confidence            4566677653  6899999999999999998765   345567899999999999994  55799999999999998531


Q ss_pred             CC---ee-e-EEe----eccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecccc
Q 036510          137 GG---WD-T-SRI----DQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQM  207 (288)
Q Consensus       137 ~~---~~-~-~~~----~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  207 (288)
                      ..   .+ . ...    .-.-+..|.|+.+||++              .+||.+--|++|++|=+.+    ++..-++-|
T Consensus       487 ~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg--------------k~LaVsLLdnTVkVyflDt----lKFflsLYG  548 (888)
T KOG0306|consen  487 VSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG--------------KLLAVSLLDNTVKVYFLDT----LKFFLSLYG  548 (888)
T ss_pred             eccCcccceeeeeccceEEeccccEEEEEEcCCC--------------cEEEEEeccCeEEEEEecc----eeeeeeecc
Confidence            11   01 0 000    01235679999999998              7899999999999998875    356668899


Q ss_pred             CCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          208 HTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       208 h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      |+-+|.|++.|||+    ++++|||.|++|+||-+.-. + +. +.++.|...|+++.|-|+...|-+++.|+.|+-||
T Consensus       549 HkLPV~smDIS~DS----klivTgSADKnVKiWGLdFG-D-CH-KS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWD  620 (888)
T KOG0306|consen  549 HKLPVLSMDISPDS----KLIVTGSADKNVKIWGLDFG-D-CH-KSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWD  620 (888)
T ss_pred             cccceeEEeccCCc----CeEEeccCCCceEEeccccc-h-hh-hhhhcccCceeEEEEcccceeEEEecCcceEEeec
Confidence            99999999999986    68999999999999987632 1 12 34567788999999999999999999999999997

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.5e-25  Score=199.37  Aligned_cols=248  Identities=22%  Similarity=0.401  Sum_probs=184.4

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCc--eeeEEEe---ccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTS--QHLAKLS---GHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~--~~~~~~~---~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      +.....|+..++-..|+.++.. ..+||.+.....  ++.....   .-...+..+.|. ....++|++++..|.|.+||
T Consensus        39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~-~~~~NlIAT~s~nG~i~vWd  116 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWG-QLYSNLIATCSTNGVISVWD  116 (839)
T ss_pred             ccccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccc-cchhhhheeecCCCcEEEEe
Confidence            4555677788888888877754 678887753221  2221111   122345678886 34678999999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      +.....-.+...+..|...+++++||+-+ ..+|++|++||.|++||+|.......+.   +....|+.++|+|...   
T Consensus       117 lnk~~rnk~l~~f~EH~Rs~~~ldfh~te-p~iliSGSQDg~vK~~DlR~~~S~~t~~---~nSESiRDV~fsp~~~---  189 (839)
T KOG0269|consen  117 LNKSIRNKLLTVFNEHERSANKLDFHSTE-PNILISGSQDGTVKCWDLRSKKSKSTFR---SNSESIRDVKFSPGYG---  189 (839)
T ss_pred             cCccccchhhhHhhhhccceeeeeeccCC-ccEEEecCCCceEEEEeeeccccccccc---ccchhhhceeeccCCC---
Confidence            85421112334577899999999999986 5689999999999999999765433322   3456799999999863   


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE  245 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~  245 (288)
                                ..|+++...|.+.+||++...   .+...+.+|.++|.|+.|+|+.    .+||||+.|+.|+||+....
T Consensus       190 ----------~~F~s~~dsG~lqlWDlRqp~---r~~~k~~AH~GpV~c~nwhPnr----~~lATGGRDK~vkiWd~t~~  252 (839)
T KOG0269|consen  190 ----------NKFASIHDSGYLQLWDLRQPD---RCEKKLTAHNGPVLCLNWHPNR----EWLATGGRDKMVKIWDMTDS  252 (839)
T ss_pred             ----------ceEEEecCCceEEEeeccCch---hHHHHhhcccCceEEEeecCCC----ceeeecCCCccEEEEeccCC
Confidence                      789999999999999998743   4455678999999999999974    68999999999999998854


Q ss_pred             CCcccceEeecc--ccCeEEEEeecCCCE-EEEEe--CCCcEEEeEcC
Q 036510          246 GDQWEGKVLHDF--KTPVYRVSWSLTGNI-LAVAD--GNNNVTLWEEA  288 (288)
Q Consensus       246 ~~~~~~~~~~~~--~~~i~~~~~spdg~~-l~s~~--~d~~v~~w~~~  288 (288)
                      ..    ...+..  ..||.+|+|=|+-++ ||+++  .|-.|+|||++
T Consensus       253 ~~----~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr  296 (839)
T KOG0269|consen  253 RA----KPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVR  296 (839)
T ss_pred             Cc----cceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeec
Confidence            21    122222  468999999998765 56554  37889999974

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=6.8e-25  Score=193.15  Aligned_cols=232  Identities=22%  Similarity=0.351  Sum_probs=184.2

Q ss_pred             cccccceEE-EEEcC-CCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            8 TGHEDTVHD-VAMDY-YGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         8 ~~h~~~v~~-~~~s~-~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      .+|.+.|.. +++.+ ++-+|++|+.|.++.+|.....  .++.+|.||+..|.++....  ++ .++|||.|.++++|-
T Consensus        54 ~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~--~P~~~LkgH~snVC~ls~~~--~~-~~iSgSWD~TakvW~  128 (745)
T KOG0301|consen   54 EGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA--EPLYTLKGHKSNVCSLSIGE--DG-TLISGSWDSTAKVWR  128 (745)
T ss_pred             ccCcceeeccceeccccCcceEeecccceEEEEecCCC--CchhhhhccccceeeeecCC--cC-ceEecccccceEEec
Confidence            356777766 77765 3345899999999999998643  66899999999999998643  34 499999999999997


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      ...     +...+.+|...|+++..-|.+   .+++|+.|++|++|.-.+     ..+...+|++-|+.+..-|+.    
T Consensus       129 ~~~-----l~~~l~gH~asVWAv~~l~e~---~~vTgsaDKtIklWk~~~-----~l~tf~gHtD~VRgL~vl~~~----  191 (745)
T KOG0301|consen  129 IGE-----LVYSLQGHTASVWAVASLPEN---TYVTGSADKTIKLWKGGT-----LLKTFSGHTDCVRGLAVLDDS----  191 (745)
T ss_pred             chh-----hhcccCCcchheeeeeecCCC---cEEeccCcceeeeccCCc-----hhhhhccchhheeeeEEecCC----
Confidence            643     234578999999999998873   589999999999996422     234567899999999887763    


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE  245 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~  245 (288)
                                 .|+|++-|+.|++|++..     +++..+.+|.+.|.++...++    .+.|+|++.|++++||+... 
T Consensus       192 -----------~flScsNDg~Ir~w~~~g-----e~l~~~~ghtn~vYsis~~~~----~~~Ivs~gEDrtlriW~~~e-  250 (745)
T KOG0301|consen  192 -----------HFLSCSNDGSIRLWDLDG-----EVLLEMHGHTNFVYSISMALS----DGLIVSTGEDRTLRIWKKDE-  250 (745)
T ss_pred             -----------CeEeecCCceEEEEeccC-----ceeeeeeccceEEEEEEecCC----CCeEEEecCCceEEEeecCc-
Confidence                       489999999999999944     467778899999999995554    36899999999999998652 


Q ss_pred             CCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          246 GDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       246 ~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                          ....+.-....|+++++-++|.+ ++|++||.||||-.
T Consensus       251 ----~~q~I~lPttsiWsa~~L~NgDI-vvg~SDG~VrVfT~  287 (745)
T KOG0301|consen  251 ----CVQVITLPTTSIWSAKVLLNGDI-VVGGSDGRVRVFTV  287 (745)
T ss_pred             ----eEEEEecCccceEEEEEeeCCCE-EEeccCceEEEEEe
Confidence                12333333457999999999987 67889999999963

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=3.8e-24  Score=172.18  Aligned_cols=241  Identities=18%  Similarity=0.263  Sum_probs=177.4

Q ss_pred             ccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510            5 KIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW   84 (288)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw   84 (288)
                      |....|+++|.+++|+.||+.+++|+.|+.+++||+..+   .+.+...|.++|..+.|.+...-..|++||.|+++|.|
T Consensus        66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~---Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfW  142 (347)
T KOG0647|consen   66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG---QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFW  142 (347)
T ss_pred             hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC---CeeeeeecccceeEEEEecCCCcceeEecccccceeec
Confidence            445579999999999999999999999999999999643   46778899999999999865334689999999999999


Q ss_pred             ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510           85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG  164 (288)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~  164 (288)
                      |++..+.   +.++.. ..++++++.-    .-+++.+..++.|.+|+++++..... +....-+-+++||+..++.   
T Consensus       143 D~R~~~p---v~t~~L-PeRvYa~Dv~----~pm~vVata~r~i~vynL~n~~te~k-~~~SpLk~Q~R~va~f~d~---  210 (347)
T KOG0647|consen  143 DTRSSNP---VATLQL-PERVYAADVL----YPMAVVATAERHIAVYNLENPPTEFK-RIESPLKWQTRCVACFQDK---  210 (347)
T ss_pred             ccCCCCe---eeeeec-cceeeehhcc----CceeEEEecCCcEEEEEcCCCcchhh-hhcCcccceeeEEEEEecC---
Confidence            9998763   334433 3578888643    22467778899999999976422111 1111233457788766654   


Q ss_pred             ceecccccCCCceeEEeecCCcEEEEEEeCC----ceeeeeeeccc---cCCcceEEEEecCCCCCCCcEEEEEeCCCcE
Q 036510          165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNG----IWKMDCFPALQ---MHTDWVRDVAWAPNLGLPKSTIASASEDGKV  237 (288)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~---~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i  237 (288)
                                 ...+-|+.+|.+-|-.+..+    .+.++|...-.   +--..|++|+|+|.-    .+||+++.||++
T Consensus       211 -----------~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h----gtlvTaGsDGtf  275 (347)
T KOG0647|consen  211 -----------DGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH----GTLVTAGSDGTF  275 (347)
T ss_pred             -----------CceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeeccc----ceEEEecCCceE
Confidence                       44588999999998887654    23345543211   112369999999973    579999999999


Q ss_pred             EEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeC
Q 036510          238 IIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADG  278 (288)
Q Consensus       238 ~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~  278 (288)
                      .+||-+....   ......+..+|+++.|+.+|.++|.+..
T Consensus       276 ~FWDkdar~k---Lk~s~~~~qpItcc~fn~~G~ifaYA~g  313 (347)
T KOG0647|consen  276 SFWDKDARTK---LKTSETHPQPITCCSFNRNGSIFAYALG  313 (347)
T ss_pred             EEecchhhhh---hhccCcCCCccceeEecCCCCEEEEEee
Confidence            9999765321   2223446679999999999999999853

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=3.4e-23  Score=160.83  Aligned_cols=245  Identities=20%  Similarity=0.281  Sum_probs=184.2

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCC----------CC---ceeeEEEeccccCeEEEEecCCCCCCEEEEeeC
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGN----------NT---SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSF   77 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~----------~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~   77 (288)
                      .+.|..++|.|.|.+.+.|++.+++|+.-...          +.   ........-|.++|++.+|++.  |+++++||+
T Consensus        32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~--geliatgsn  109 (350)
T KOG0641|consen   32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC--GELIATGSN  109 (350)
T ss_pred             hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc--cCeEEecCC
Confidence            46788999999999999999999999974321          00   1123445678999999999975  999999999


Q ss_pred             CCcEEEeecCCCCc--eEEeEEeecCCCceeEEEeccCC--CCeEEEEE-eCCCcEEEEeecCCCCeeeEEeeccCCCCe
Q 036510           78 DGTVIIWKEGNSNE--WIKDHVFEDHKSSVNSIDWAPHE--LGLCLACG-SSDGNISVFTARADGGWDTSRIDQAHPVGV  152 (288)
Q Consensus        78 d~~v~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~~p~~--~~~~l~sg-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v  152 (288)
                      |++|++.-....++  ......+..|.+.|..++|-.+.  .+.+|+++ ..|-+|++-|-.+++.   ++-+.+|+..|
T Consensus       110 dk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~---~~a~sghtghi  186 (350)
T KOG0641|consen  110 DKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG---FHALSGHTGHI  186 (350)
T ss_pred             CceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc---ceeecCCcccE
Confidence            99999975532211  11223466799999999995432  24566666 4455777767666544   45567899989


Q ss_pred             eEE-EeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecc----cc---CCcceEEEEecCCCCCC
Q 036510          153 TSV-SWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPAL----QM---HTDWVRDVAWAPNLGLP  224 (288)
Q Consensus       153 ~~i-~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----~~---h~~~V~~v~~sp~~~~~  224 (288)
                      .++ .|+.                -++++|+.|++|++||++-+.    ++..+    .+   -.+.|.+|+..|.    
T Consensus       187 lalyswn~----------------~m~~sgsqdktirfwdlrv~~----~v~~l~~~~~~~glessavaav~vdps----  242 (350)
T KOG0641|consen  187 LALYSWNG----------------AMFASGSQDKTIRFWDLRVNS----CVNTLDNDFHDGGLESSAVAAVAVDPS----  242 (350)
T ss_pred             EEEEEecC----------------cEEEccCCCceEEEEeeeccc----eeeeccCcccCCCcccceeEEEEECCC----
Confidence            887 5653                469999999999999998652    33332    11   1356999999997    


Q ss_pred             CcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          225 KSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       225 ~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      +.+|++|-.|..+.+||++-.   .....++.|...|.++-|||.-.++++++-|.+|+|=|+
T Consensus       243 grll~sg~~dssc~lydirg~---r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdl  302 (350)
T KOG0641|consen  243 GRLLASGHADSSCMLYDIRGG---RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDL  302 (350)
T ss_pred             cceeeeccCCCceEEEEeeCC---ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeec
Confidence            478999999999999999843   234556788899999999999999999999999999774

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.2e-25  Score=195.01  Aligned_cols=250  Identities=19%  Similarity=0.322  Sum_probs=203.6

Q ss_pred             ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510            7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE   86 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~   86 (288)
                      +..|.+.|+.+.+.-+|+.|.|+|.|-+|++|+......-+..++..|++-|.++++-. ++..++||||-|+.|.+||+
T Consensus        69 me~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~a-k~~~lvaSgGLD~~IflWDi  147 (735)
T KOG0308|consen   69 MEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIA-KNNELVASGGLDRKIFLWDI  147 (735)
T ss_pred             hhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecc-cCceeEEecCCCccEEEEEc
Confidence            45799999999998889999999999999999986433356778899999999999832 35789999999999999999


Q ss_pred             CCCCc-------eEEeEEee-cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeC
Q 036510           87 GNSNE-------WIKDHVFE-DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWA  158 (288)
Q Consensus        87 ~~~~~-------~~~~~~~~-~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~  158 (288)
                      ..+..       ......+. +++..|++++-++.  +..+++|+..+-|++||.++....+   .+.+|+..|..+..+
T Consensus       148 n~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t--~t~ivsGgtek~lr~wDprt~~kim---kLrGHTdNVr~ll~~  222 (735)
T KOG0308|consen  148 NTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT--GTIIVSGGTEKDLRLWDPRTCKKIM---KLRGHTDNVRVLLVN  222 (735)
T ss_pred             cCcchhhhhhccccccccCCCCCccceeeeecCCc--ceEEEecCcccceEEecccccccee---eeeccccceEEEEEc
Confidence            75522       11222343 78999999998876  6789999999999999999865433   345999999999988


Q ss_pred             CCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEE
Q 036510          159 PSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVI  238 (288)
Q Consensus       159 p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~  238 (288)
                      +++              +.++|+|.|++|++||+...    +|+.++..|.+.|+++.-+|+.    +.+-+|+.|+.|.
T Consensus       223 dDG--------------t~~ls~sSDgtIrlWdLgqQ----rCl~T~~vH~e~VWaL~~~~sf----~~vYsG~rd~~i~  280 (735)
T KOG0308|consen  223 DDG--------------TRLLSASSDGTIRLWDLGQQ----RCLATYIVHKEGVWALQSSPSF----THVYSGGRDGNIY  280 (735)
T ss_pred             CCC--------------CeEeecCCCceEEeeecccc----ceeeeEEeccCceEEEeeCCCc----ceEEecCCCCcEE
Confidence            887              78999999999999999753    7888899999999999999975    6899999999999


Q ss_pred             EEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          239 IWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       239 iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      .=|++...   ....+.+-..||..+..+...+-+-++.-|++|+=|..
T Consensus       281 ~Tdl~n~~---~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~  326 (735)
T KOG0308|consen  281 RTDLRNPA---KSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKL  326 (735)
T ss_pred             ecccCCch---hheEeecCCCchhhhhhccccCCceeeeccccceecCC
Confidence            98887532   23445555667877887766666677888999998864

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=4.6e-25  Score=178.77  Aligned_cols=236  Identities=20%  Similarity=0.365  Sum_probs=171.9

Q ss_pred             CEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCC
Q 036510           24 KRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKS  103 (288)
Q Consensus        24 ~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~  103 (288)
                      ..|+|.-.|+++..        ..++.+.||++.||.++-...  -.++.++|+|.+.+||.++++.+   ..++.+|.+
T Consensus       125 srivssFk~~t~~~--------~lvre~~GHkDGiW~Vaa~~t--qpi~gtASADhTA~iWs~Esg~C---L~~Y~GH~G  191 (481)
T KOG0300|consen  125 SRIVSSFKDGTVKF--------RLVRELEGHKDGIWHVAADST--QPICGTASADHTARIWSLESGAC---LATYTGHTG  191 (481)
T ss_pred             chheeeecCCceeE--------eehhhhcccccceeeehhhcC--CcceeecccccceeEEeeccccc---eeeeccccc
Confidence            34666666666432        345668899999999996543  35899999999999999998874   456789999


Q ss_pred             ceeEEEeccCCCCeEEEEEeCCCcEEEEee------cCCCC---eee---EE-------------eeccCCCCeeEEEeC
Q 036510          104 SVNSIDWAPHELGLCLACGSSDGNISVFTA------RADGG---WDT---SR-------------IDQAHPVGVTSVSWA  158 (288)
Q Consensus       104 ~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~------~~~~~---~~~---~~-------------~~~~~~~~v~~i~~~  158 (288)
                      .|++++|++.  +.++++++.|++-.||..      ..+..   ...   ..             ...+|+..+--+.+ 
T Consensus       192 SVNsikfh~s--~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~l-  268 (481)
T KOG0300|consen  192 SVNSIKFHNS--GLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRL-  268 (481)
T ss_pred             ceeeEEeccc--cceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeee-
Confidence            9999999997  678999999999999962      11100   000   00             00001100000000 


Q ss_pred             CCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEE
Q 036510          159 PSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVI  238 (288)
Q Consensus       159 p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~  238 (288)
                       .+..+.+..++....++.++++++|++-.+||++++    +.+..+.||....+-++-+|.    ..++++.|.|-+.+
T Consensus       269 -tgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg----e~v~~LtGHd~ELtHcstHpt----QrLVvTsSrDtTFR  339 (481)
T KOG0300|consen  269 -TGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG----EVVNILTGHDSELTHCSTHPT----QRLVVTSSRDTTFR  339 (481)
T ss_pred             -eccccceEehhhhcCcceeeeeeccccceeeeeccC----ceeccccCcchhccccccCCc----ceEEEEeccCceeE
Confidence             112233334445555688999999999999999998    578889999999999999997    46899999999999


Q ss_pred             EEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          239 IWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       239 iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      +||.+..  ......+.+|...|+++.|+-|.+ +++|+.|.+|+|||+
T Consensus       340 LWDFRea--I~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdL  385 (481)
T KOG0300|consen  340 LWDFREA--IQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDL  385 (481)
T ss_pred             eccchhh--cceeeeecccccceeEEEEecCCc-eeecCCCceEEEeee
Confidence            9998743  223456778888999999987665 589999999999995

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.93  E-value=3.8e-25  Score=178.66  Aligned_cols=214  Identities=21%  Similarity=0.313  Sum_probs=163.6

Q ss_pred             eEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecC------C------CC---ceEEeEEeecCCCceeEEEecc
Q 036510           48 LAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEG------N------SN---EWIKDHVFEDHKSSVNSIDWAP  112 (288)
Q Consensus        48 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~------~------~~---~~~~~~~~~~h~~~v~~l~~~p  112 (288)
                      ...+..|++++.+.+|+++  |.++++||.|.+|+|.|+.      .      +.   ..+.++++..|.++|+++.|||
T Consensus       105 t~ylt~HK~~cR~aafs~D--G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP  182 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPD--GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP  182 (430)
T ss_pred             eEEEeecccceeeeeeCCC--CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence            3556789999999999975  9999999999999999974      0      11   1235577889999999999999


Q ss_pred             CCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEE
Q 036510          113 HELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKL  192 (288)
Q Consensus       113 ~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  192 (288)
                      .  ...|++|+.|++|++||+.....-..++..+ ....|.+|+|.|.+              .+|+.|..-.++++||+
T Consensus       183 r--e~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsG--------------efllvgTdHp~~rlYdv  245 (430)
T KOG0640|consen  183 R--ETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSG--------------EFLLVGTDHPTLRLYDV  245 (430)
T ss_pred             h--hheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCC--------------ceEEEecCCCceeEEec
Confidence            7  4679999999999999986532110011111 12358999999987              77888888889999999


Q ss_pred             eCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeecc-ccCeEEEEeecCCC
Q 036510          193 YNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDF-KTPVYRVSWSLTGN  271 (288)
Q Consensus       193 ~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~-~~~i~~~~~spdg~  271 (288)
                      .+-+.-.... .-.+|.+.|++|.+++.    +++-++||.||.|++||--++  ++....-.-| ++.|.++.|..+|+
T Consensus       246 ~T~Qcfvsan-Pd~qht~ai~~V~Ys~t----~~lYvTaSkDG~IklwDGVS~--rCv~t~~~AH~gsevcSa~Ftkn~k  318 (430)
T KOG0640|consen  246 NTYQCFVSAN-PDDQHTGAITQVRYSST----GSLYVTASKDGAIKLWDGVSN--RCVRTIGNAHGGSEVCSAVFTKNGK  318 (430)
T ss_pred             cceeEeeecC-cccccccceeEEEecCC----ccEEEEeccCCcEEeeccccH--HHHHHHHhhcCCceeeeEEEccCCe
Confidence            8753211111 23689999999999997    478999999999999985432  2221221223 35799999999999


Q ss_pred             EEEEEeCCCcEEEeEc
Q 036510          272 ILAVADGNNNVTLWEE  287 (288)
Q Consensus       272 ~l~s~~~d~~v~~w~~  287 (288)
                      ++++.+.|.+|+||.+
T Consensus       319 yiLsSG~DS~vkLWEi  334 (430)
T KOG0640|consen  319 YILSSGKDSTVKLWEI  334 (430)
T ss_pred             EEeecCCcceeeeeee
Confidence            9999999999999985

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.93  E-value=5.8e-24  Score=170.74  Aligned_cols=216  Identities=23%  Similarity=0.408  Sum_probs=166.1

Q ss_pred             ccccccccceEEEEEcC-CCCEEEEeeCCCcEEEEEeCCCCc--------eee-----EEEeccccCeEEEEecCCCCCC
Q 036510            5 KIETGHEDTVHDVAMDY-YGKRLATASSDYSIKIIGVGNNTS--------QHL-----AKLSGHKGAVWEVAWAHPKFGS   70 (288)
Q Consensus         5 ~~~~~h~~~v~~~~~s~-~g~~l~s~~~d~~i~lwd~~~~~~--------~~~-----~~~~~h~~~v~~~~~~~~~~~~   70 (288)
                      .+...|.+.|+++...+ .|+|++||+.|+.|.+||+.+.+.        +.+     ..-.+|+..|..+.|-| .+..
T Consensus        37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP-~DtG  115 (397)
T KOG4283|consen   37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYP-IDTG  115 (397)
T ss_pred             ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEee-ecCc
Confidence            35668999999999987 589999999999999999964331        111     11247899999999975 3577


Q ss_pred             EEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCe-EEEEEeCCCcEEEEeecCCCCeeeEEeeccCC
Q 036510           71 ILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGL-CLACGSSDGNISVFTARADGGWDTSRIDQAHP  149 (288)
Q Consensus        71 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~-~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~  149 (288)
                      +|.|+|.|.++|+||..+..+   ...++ -.+.|++-+++|-.... ++|+|..|-.|++.|+..+.-   .+.+++|.
T Consensus       116 mFtssSFDhtlKVWDtnTlQ~---a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~---sH~LsGHr  188 (397)
T KOG4283|consen  116 MFTSSSFDHTLKVWDTNTLQE---AVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF---SHTLSGHR  188 (397)
T ss_pred             eeecccccceEEEeeccccee---eEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc---eeeecccc
Confidence            999999999999999765332   22333 34678888888875433 678888889999999987643   35678999


Q ss_pred             CCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeee-----------eeeccccCCcceEEEEec
Q 036510          150 VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMD-----------CFPALQMHTDWVRDVAWA  218 (288)
Q Consensus       150 ~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-----------~~~~~~~h~~~V~~v~~s  218 (288)
                      ..|.++.|+|...             -.|+||++|+.||+||++...-.+.           ....-..|.+.|+.++|.
T Consensus       189 ~~vlaV~Wsp~~e-------------~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t  255 (397)
T KOG4283|consen  189 DGVLAVEWSPSSE-------------WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT  255 (397)
T ss_pred             CceEEEEeccCce-------------eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec
Confidence            9999999999872             5699999999999999975411111           111234688889999999


Q ss_pred             CCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510          219 PNLGLPKSTIASASEDGKVIIWTVARE  245 (288)
Q Consensus       219 p~~~~~~~~l~s~s~D~~i~iw~~~~~  245 (288)
                      .+.    .++++.+.|..+++|+....
T Consensus       256 Sd~----~~l~~~gtd~r~r~wn~~~G  278 (397)
T KOG4283|consen  256 SDA----RYLASCGTDDRIRVWNMESG  278 (397)
T ss_pred             ccc----hhhhhccCccceEEeecccC
Confidence            874    68999999999999998653

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2e-24  Score=194.15  Aligned_cols=208  Identities=19%  Similarity=0.273  Sum_probs=158.5

Q ss_pred             CCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEE
Q 036510            3 PQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVI   82 (288)
Q Consensus         3 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~   82 (288)
                      |...+.||.+.|.+|+||.++ +|+|+|.|+|||||++.  ...+++++. |.+-|++++|.| .|.++|+|||-|+.+|
T Consensus       361 P~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~--~~~CL~~F~-HndfVTcVaFnP-vDDryFiSGSLD~KvR  435 (712)
T KOG0283|consen  361 PFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPG--RKECLKVFS-HNDFVTCVAFNP-VDDRYFISGSLDGKVR  435 (712)
T ss_pred             chhhhhccchhheecccccCC-eeEeccccccEEeecCC--CcceeeEEe-cCCeeEEEEecc-cCCCcEeecccccceE
Confidence            344567999999999999765 89999999999999984  446787775 999999999975 4689999999999999


Q ss_pred             EeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEee------ccCCCCeeEEE
Q 036510           83 IWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRID------QAHPVGVTSVS  156 (288)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~------~~~~~~v~~i~  156 (288)
                      ||++.+..    +..+..-.+-|++++|.|+  |..++.|+.+|.+++|+++...-....++.      ..|. .|+.+.
T Consensus       436 iWsI~d~~----Vv~W~Dl~~lITAvcy~Pd--Gk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q  508 (712)
T KOG0283|consen  436 LWSISDKK----VVDWNDLRDLITAVCYSPD--GKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQ  508 (712)
T ss_pred             EeecCcCe----eEeehhhhhhheeEEeccC--CceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeE
Confidence            99986532    3333334478999999998  778899999999999998743211111111      1233 699999


Q ss_pred             eCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCc--ceEEEEecCCCCCCCcEEEEEeCC
Q 036510          157 WAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTD--WVRDVAWAPNLGLPKSTIASASED  234 (288)
Q Consensus       157 ~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~--~V~~v~~sp~~~~~~~~l~s~s~D  234 (288)
                      |.|..+             ..++..+.|..|+|+|.++.    +++..++|+..  .-...+|+.|    +++|++|++|
T Consensus       509 ~~p~~~-------------~~vLVTSnDSrIRI~d~~~~----~lv~KfKG~~n~~SQ~~Asfs~D----gk~IVs~seD  567 (712)
T KOG0283|consen  509 FFPGDP-------------DEVLVTSNDSRIRIYDGRDK----DLVHKFKGFRNTSSQISASFSSD----GKHIVSASED  567 (712)
T ss_pred             ecCCCC-------------CeEEEecCCCceEEEeccch----hhhhhhcccccCCcceeeeEccC----CCEEEEeecC
Confidence            998764             34555578999999999653    34555665543  2244588887    4799999999


Q ss_pred             CcEEEEEee
Q 036510          235 GKVIIWTVA  243 (288)
Q Consensus       235 ~~i~iw~~~  243 (288)
                      ..|.||+..
T Consensus       568 s~VYiW~~~  576 (712)
T KOG0283|consen  568 SWVYIWKND  576 (712)
T ss_pred             ceEEEEeCC
Confidence            999999973

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=7.8e-23  Score=165.62  Aligned_cols=238  Identities=18%  Similarity=0.275  Sum_probs=176.4

Q ss_pred             cccceEEEEEcCCCCEEEEeeC--CCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecC
Q 036510           10 HEDTVHDVAMDYYGKRLATASS--DYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEG   87 (288)
Q Consensus        10 h~~~v~~~~~s~~g~~l~s~~~--d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~   87 (288)
                      ++-+|..++|-...+.+..++.  |.+||+.++...  +.++.+.||+..|+.|+-+|-  ++.|+|+|.|++|++||++
T Consensus        55 kkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN--kylRYF~GH~~~V~sL~~sP~--~d~FlS~S~D~tvrLWDlR  130 (311)
T KOG1446|consen   55 KKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN--KYLRYFPGHKKRVNSLSVSPK--DDTFLSSSLDKTVRLWDLR  130 (311)
T ss_pred             ccccccEEEEecCCceEEEccCCCCCceEEEEeecC--ceEEEcCCCCceEEEEEecCC--CCeEEecccCCeEEeeEec
Confidence            3457778888776767777776  999999998644  779999999999999998764  6899999999999999999


Q ss_pred             CCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCC--CCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           88 NSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARAD--GGWDTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        88 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      ..++...   +.  ...-..++|.|.  |.++|++...+.|++||+|.-  +..........-....+.+.|+|++    
T Consensus       131 ~~~cqg~---l~--~~~~pi~AfDp~--GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dG----  199 (311)
T KOG1446|consen  131 VKKCQGL---LN--LSGRPIAAFDPE--GLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDG----  199 (311)
T ss_pred             CCCCceE---Ee--cCCCcceeECCC--CcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCC----
Confidence            7664322   22  223355677887  788888877779999999964  2333333333445678889999988    


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcce---EEEEecCCCCCCCcEEEEEeCCCcEEEEEe
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWV---RDVAWAPNLGLPKSTIASASEDGKVIIWTV  242 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V---~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~  242 (288)
                                +.++.+...+.+.+.|...|.    ...++.++...-   -+..|.||+    +.|++|+.||+|.+|++
T Consensus       200 ----------K~iLlsT~~s~~~~lDAf~G~----~~~tfs~~~~~~~~~~~a~ftPds----~Fvl~gs~dg~i~vw~~  261 (311)
T KOG1446|consen  200 ----------KSILLSTNASFIYLLDAFDGT----VKSTFSGYPNAGNLPLSATFTPDS----KFVLSGSDDGTIHVWNL  261 (311)
T ss_pred             ----------CEEEEEeCCCcEEEEEccCCc----EeeeEeeccCCCCcceeEEECCCC----cEEEEecCCCcEEEEEc
Confidence                      667777778889999998884    334444444321   466999985    78999999999999999


Q ss_pred             ecCCCcccceEeec-cccCeEEEEeecCCCEEEEEeCCCcEEEe
Q 036510          243 AREGDQWEGKVLHD-FKTPVYRVSWSLTGNILAVADGNNNVTLW  285 (288)
Q Consensus       243 ~~~~~~~~~~~~~~-~~~~i~~~~~spdg~~l~s~~~d~~v~~w  285 (288)
                      +....   .....+ ...++.++.|+|.-.++++++  ..+-+|
T Consensus       262 ~tg~~---v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw  300 (311)
T KOG1446|consen  262 ETGKK---VAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFW  300 (311)
T ss_pred             CCCcE---eeEecCCCCCCccccccCCceeeeeecC--ceEEEE
Confidence            65421   122223 356889999999999998776  566666

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.6e-23  Score=183.55  Aligned_cols=222  Identities=27%  Similarity=0.440  Sum_probs=176.7

Q ss_pred             EEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeec-CCCc
Q 036510           26 LATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFED-HKSS  104 (288)
Q Consensus        26 l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~-h~~~  104 (288)
                      +++.+.+..|.+|+........+..+  +...|+++.|+++  |.+|+.|-.+|.|.|||....+   ....+.+ |...
T Consensus       190 ~laValg~~vylW~~~s~~v~~l~~~--~~~~vtSv~ws~~--G~~LavG~~~g~v~iwD~~~~k---~~~~~~~~h~~r  262 (484)
T KOG0305|consen  190 VLAVALGQSVYLWSASSGSVTELCSF--GEELVTSVKWSPD--GSHLAVGTSDGTVQIWDVKEQK---KTRTLRGSHASR  262 (484)
T ss_pred             eEEEEecceEEEEecCCCceEEeEec--CCCceEEEEECCC--CCEEEEeecCCeEEEEehhhcc---ccccccCCcCce
Confidence            44455567899998754433334443  3788999999864  9999999999999999987654   3445666 9999


Q ss_pred             eeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecC
Q 036510          105 VNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCD  184 (288)
Q Consensus       105 v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d  184 (288)
                      |.+++|+.    ..+.+|+.|+.|.++|+|..+....  .+++|...|+-++|++++              .+|++|+-|
T Consensus       263 vg~laW~~----~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~--------------~~lASGgnD  322 (484)
T KOG0305|consen  263 VGSLAWNS----SVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDG--------------NQLASGGND  322 (484)
T ss_pred             eEEEeccC----ceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCC--------------CeeccCCCc
Confidence            99999994    3689999999999999997654432  467899999999999998              889999999


Q ss_pred             CcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeC--CCcEEEEEeecCCCcccceEeec--cccC
Q 036510          185 NTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE--DGKVIIWTVAREGDQWEGKVLHD--FKTP  260 (288)
Q Consensus       185 ~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~--D~~i~iw~~~~~~~~~~~~~~~~--~~~~  260 (288)
                      +.+.|||....    +....+..|...|.+++|+|-.   ..+||+|+.  |+.|++||....      ..+..  -++.
T Consensus       323 N~~~Iwd~~~~----~p~~~~~~H~aAVKA~awcP~q---~~lLAsGGGs~D~~i~fwn~~~g------~~i~~vdtgsQ  389 (484)
T KOG0305|consen  323 NVVFIWDGLSP----EPKFTFTEHTAAVKALAWCPWQ---SGLLATGGGSADRCIKFWNTNTG------ARIDSVDTGSQ  389 (484)
T ss_pred             cceEeccCCCc----cccEEEeccceeeeEeeeCCCc---cCceEEcCCCcccEEEEEEcCCC------cEecccccCCc
Confidence            99999998543    3455678899999999999974   468999874  999999998743      22222  2468


Q ss_pred             eEEEEeecCCCEEEEEeC--CCcEEEeEc
Q 036510          261 VYRVSWSLTGNILAVADG--NNNVTLWEE  287 (288)
Q Consensus       261 i~~~~~spdg~~l~s~~~--d~~v~~w~~  287 (288)
                      |.++.|++..+.|+++-.  ++.|.||+.
T Consensus       390 VcsL~Wsk~~kEi~sthG~s~n~i~lw~~  418 (484)
T KOG0305|consen  390 VCSLIWSKKYKELLSTHGYSENQITLWKY  418 (484)
T ss_pred             eeeEEEcCCCCEEEEecCCCCCcEEEEec
Confidence            999999999998888753  678999984

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=7e-24  Score=177.00  Aligned_cols=208  Identities=22%  Similarity=0.351  Sum_probs=169.3

Q ss_pred             eEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCc
Q 036510           48 LAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGN  127 (288)
Q Consensus        48 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~  127 (288)
                      .+.+..|++.||.+.||++  |++|||+|.|.+..||.+.........+++.+|.++|.-+.|+||  .++|++++.|..
T Consensus       217 ~qil~~htdEVWfl~FS~n--GkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPD--dryLlaCg~~e~  292 (519)
T KOG0293|consen  217 WQILQDHTDEVWFLQFSHN--GKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPD--DRYLLACGFDEV  292 (519)
T ss_pred             hhhHhhCCCcEEEEEEcCC--CeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCC--CCeEEecCchHh
Confidence            4567899999999999975  999999999999999998665556677889999999999999999  567888888889


Q ss_pred             EEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecccc
Q 036510          128 ISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQM  207 (288)
Q Consensus       128 i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  207 (288)
                      +.+||..++....  ...++|...+.++.|.|++              ..+++|+.|++|.+||+....     ....++
T Consensus       293 ~~lwDv~tgd~~~--~y~~~~~~S~~sc~W~pDg--------------~~~V~Gs~dr~i~~wdlDgn~-----~~~W~g  351 (519)
T KOG0293|consen  293 LSLWDVDTGDLRH--LYPSGLGFSVSSCAWCPDG--------------FRFVTGSPDRTIIMWDLDGNI-----LGNWEG  351 (519)
T ss_pred             eeeccCCcchhhh--hcccCcCCCcceeEEccCC--------------ceeEecCCCCcEEEecCCcch-----hhcccc
Confidence            9999998765322  2223466889999999998              669999999999999997642     333443


Q ss_pred             CC-cceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          208 HT-DWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       208 h~-~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      .. ..|.+++..+|+    +++++...|..|++++.....+.   .++ ....+|++.+.|.||+++++.=.+..|++||
T Consensus       352 vr~~~v~dlait~Dg----k~vl~v~~d~~i~l~~~e~~~dr---~li-se~~~its~~iS~d~k~~LvnL~~qei~LWD  423 (519)
T KOG0293|consen  352 VRDPKVHDLAITYDG----KYVLLVTVDKKIRLYNREARVDR---GLI-SEEQPITSFSISKDGKLALVNLQDQEIHLWD  423 (519)
T ss_pred             cccceeEEEEEcCCC----cEEEEEecccceeeechhhhhhh---ccc-cccCceeEEEEcCCCcEEEEEcccCeeEEee
Confidence            33 358999999984    78888899999999998754221   122 2346899999999999999999999999999


Q ss_pred             cC
Q 036510          287 EA  288 (288)
Q Consensus       287 ~~  288 (288)
                      .+
T Consensus       424 l~  425 (519)
T KOG0293|consen  424 LE  425 (519)
T ss_pred             cc
Confidence            64

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.92  E-value=3.7e-23  Score=164.00  Aligned_cols=207  Identities=16%  Similarity=0.268  Sum_probs=163.7

Q ss_pred             EEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEE
Q 036510           50 KLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNIS  129 (288)
Q Consensus        50 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~  129 (288)
                      -+.||..+++.+.|+++  |.+|.||+.|.++.+|-..++.   ...++.+|.+.|+|++..-+  ...+++|+.|++++
T Consensus         5 ~l~GHERplTqiKyN~e--GDLlFscaKD~~~~vw~s~nGe---rlGty~GHtGavW~~Did~~--s~~liTGSAD~t~k   77 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNRE--GDLLFSCAKDSTPTVWYSLNGE---RLGTYDGHTGAVWCCDIDWD--SKHLITGSADQTAK   77 (327)
T ss_pred             ccccCccccceEEecCC--CcEEEEecCCCCceEEEecCCc---eeeeecCCCceEEEEEecCC--cceeeeccccceeE
Confidence            36799999999999875  8999999999999999776665   56788999999999997655  67899999999999


Q ss_pred             EEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEe-----ecCCcEEEEEEeCCc---eeeee
Q 036510          130 VFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSG-----GCDNTVKVWKLYNGI---WKMDC  201 (288)
Q Consensus       130 i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~-----~~d~~i~iwd~~~~~---~~~~~  201 (288)
                      +||..++.+.....    .+..|..+.|++.+.              +++..     +.-+.|.++|++...   ...++
T Consensus        78 LWDv~tGk~la~~k----~~~~Vk~~~F~~~gn--------------~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep  139 (327)
T KOG0643|consen   78 LWDVETGKQLATWK----TNSPVKRVDFSFGGN--------------LILASTDKQMGYTCFVSVFDIRDDSSDIDSEEP  139 (327)
T ss_pred             EEEcCCCcEEEEee----cCCeeEEEeeccCCc--------------EEEEEehhhcCcceEEEEEEccCChhhhcccCc
Confidence            99999886544432    467799999999873              32222     223468899997432   11133


Q ss_pred             eeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCc
Q 036510          202 FPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNN  281 (288)
Q Consensus       202 ~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~  281 (288)
                      +..+..+.+.+..+-|.|-    +.+|++|..||.|.+||++...+.  ......|...|+.++|+||..+|+++|.|.+
T Consensus       140 ~~kI~t~~skit~a~Wg~l----~~~ii~Ghe~G~is~~da~~g~~~--v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtt  213 (327)
T KOG0643|consen  140 YLKIPTPDSKITSALWGPL----GETIIAGHEDGSISIYDARTGKEL--VDSDEEHSSKINDLQFSRDRTYFITGSKDTT  213 (327)
T ss_pred             eEEecCCccceeeeeeccc----CCEEEEecCCCcEEEEEcccCcee--eechhhhccccccccccCCcceEEecccCcc
Confidence            4455667788999999996    478999999999999999864321  2223456678999999999999999999999


Q ss_pred             EEEeEc
Q 036510          282 VTLWEE  287 (288)
Q Consensus       282 v~~w~~  287 (288)
                      -++||+
T Consensus       214 akl~D~  219 (327)
T KOG0643|consen  214 AKLVDV  219 (327)
T ss_pred             ceeeec
Confidence            999995

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.92  E-value=6.7e-24  Score=166.83  Aligned_cols=201  Identities=23%  Similarity=0.354  Sum_probs=159.5

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCC
Q 036510            9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN   88 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~   88 (288)
                      .|.--|..++|+.|.++|++|+.++.+|++|++.+. .+...+.+|.+.|..+-|-+.  .+.++|++.|++||+||.++
T Consensus        98 ~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~-App~E~~ghtg~Ir~v~wc~e--D~~iLSSadd~tVRLWD~rT  174 (334)
T KOG0278|consen   98 EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK-APPKEISGHTGGIRTVLWCHE--DKCILSSADDKTVRLWDHRT  174 (334)
T ss_pred             hhhheeeeEEecccchhhhccchHHHhhhhhccCCC-CCchhhcCCCCcceeEEEecc--CceEEeeccCCceEEEEecc
Confidence            577778899999999999999999999999997544 345667899999999999874  57888889999999999998


Q ss_pred             CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceec
Q 036510           89 SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG  168 (288)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~  168 (288)
                      +.   .++++. ...+|+++.++++  +.++. -...+.|.+||...-+.+   +.. ..+..|.+.+..|+.       
T Consensus       175 gt---~v~sL~-~~s~VtSlEvs~d--G~ilT-ia~gssV~Fwdaksf~~l---Ks~-k~P~nV~SASL~P~k-------  236 (334)
T KOG0278|consen  175 GT---EVQSLE-FNSPVTSLEVSQD--GRILT-IAYGSSVKFWDAKSFGLL---KSY-KMPCNVESASLHPKK-------  236 (334)
T ss_pred             Cc---EEEEEe-cCCCCcceeeccC--CCEEE-EecCceeEEeccccccce---eec-cCccccccccccCCC-------
Confidence            76   344443 3568999999998  55444 345678999998754322   211 234567888888876       


Q ss_pred             ccccCCCceeEEeecCCcEEEEEEeCCceeeeeeec-cccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510          169 SGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPA-LQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE  245 (288)
Q Consensus       169 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~  245 (288)
                             ..++.|+.|..+.-||..++.    .+-. .++|.++|.||.|+|++    ..-|+||.||+||+|.....
T Consensus       237 -------~~fVaGged~~~~kfDy~Tge----Ei~~~nkgh~gpVhcVrFSPdG----E~yAsGSEDGTirlWQt~~~  299 (334)
T KOG0278|consen  237 -------EFFVAGGEDFKVYKFDYNTGE----EIGSYNKGHFGPVHCVRFSPDG----ELYASGSEDGTIRLWQTTPG  299 (334)
T ss_pred             -------ceEEecCcceEEEEEeccCCc----eeeecccCCCCceEEEEECCCC----ceeeccCCCceEEEEEecCC
Confidence                   679999999999999998874    2223 48999999999999985    57899999999999987643

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=1.2e-23  Score=166.20  Aligned_cols=207  Identities=24%  Similarity=0.399  Sum_probs=155.1

Q ss_pred             EEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcE
Q 036510           49 AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNI  128 (288)
Q Consensus        49 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i  128 (288)
                      +.+.+|.+.+..++|+.+  |..|++++.|+++++|++.... ........+|.+.|-.+.|+|.. ..++++++.|++|
T Consensus        14 r~~~~~~~~v~Sv~wn~~--g~~lasgs~dktv~v~n~e~~r-~~~~~~~~gh~~svdql~w~~~~-~d~~atas~dk~i   89 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCD--GTKLASGSFDKTVSVWNLERDR-FRKELVYRGHTDSVDQLCWDPKH-PDLFATASGDKTI   89 (313)
T ss_pred             HHhhhhhhcceEEEEccc--CceeeecccCCceEEEEecchh-hhhhhcccCCCcchhhheeCCCC-CcceEEecCCceE
Confidence            346789999999999864  9999999999999999986432 11223456799999999999875 4578899999999


Q ss_pred             EEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCc------------
Q 036510          129 SVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGI------------  196 (288)
Q Consensus       129 ~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~------------  196 (288)
                      ++||+|.........    .+..=.-+.|+|++              .+++.++.|..|.+.|.++-.            
T Consensus        90 r~wd~r~~k~~~~i~----~~~eni~i~wsp~g--------------~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~n  151 (313)
T KOG1407|consen   90 RIWDIRSGKCTARIE----TKGENINITWSPDG--------------EYIAVGNKDDRITFIDARTYKIVNEEQFKFEVN  151 (313)
T ss_pred             EEEEeccCcEEEEee----ccCcceEEEEcCCC--------------CEEEEecCcccEEEEEecccceeehhcccceee
Confidence            999999876543322    22333467899987              445555555555555543210            


Q ss_pred             -------------------------eeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccc
Q 036510          197 -------------------------WKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEG  251 (288)
Q Consensus       197 -------------------------~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~  251 (288)
                                               ..++.+++++.|...+.||.|+|+    +++||+||.|..+-+||++..   .-.
T Consensus       152 e~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~----GryfA~GsADAlvSLWD~~EL---iC~  224 (313)
T KOG1407|consen  152 EISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPD----GRYFATGSADALVSLWDVDEL---ICE  224 (313)
T ss_pred             eeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCC----CceEeeccccceeeccChhHh---hhh
Confidence                                     023556678899999999999998    479999999999999999742   122


Q ss_pred             eEeeccccCeEEEEeecCCCEEEEEeCCCcEEE
Q 036510          252 KVLHDFKTPVYRVSWSLTGNILAVADGNNNVTL  284 (288)
Q Consensus       252 ~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~  284 (288)
                      +.+..+.=||..+.||.||++||+||+|-.|-|
T Consensus       225 R~isRldwpVRTlSFS~dg~~lASaSEDh~IDI  257 (313)
T KOG1407|consen  225 RCISRLDWPVRTLSFSHDGRMLASASEDHFIDI  257 (313)
T ss_pred             eeeccccCceEEEEeccCcceeeccCccceEEe
Confidence            444555668999999999999999999987743

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=8.9e-23  Score=164.73  Aligned_cols=222  Identities=22%  Similarity=0.409  Sum_probs=171.5

Q ss_pred             ccccceEEEEEcC--CCCEEEEeeCCCcEEEEEeCC-------CCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCC
Q 036510            9 GHEDTVHDVAMDY--YGKRLATASSDYSIKIIGVGN-------NTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDG   79 (288)
Q Consensus         9 ~h~~~v~~~~~s~--~g~~l~s~~~d~~i~lwd~~~-------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~   79 (288)
                      .|++.|..|.|-+  .|+.+|++|.|+++.||+...       .+.....++......|++++|.|...|..+++++.||
T Consensus        57 ah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG  136 (361)
T KOG2445|consen   57 AHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADG  136 (361)
T ss_pred             ecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCc
Confidence            6899999999854  599999999999999997621       1223456778888999999999877799999999999


Q ss_pred             cEEEeecCCC---CceEEeEEee-------cCCCceeEEEeccCCCC-eEEEEEeCC-----CcEEEEeecCCC-CeeeE
Q 036510           80 TVIIWKEGNS---NEWIKDHVFE-------DHKSSVNSIDWAPHELG-LCLACGSSD-----GNISVFTARADG-GWDTS  142 (288)
Q Consensus        80 ~v~iwd~~~~---~~~~~~~~~~-------~h~~~v~~l~~~p~~~~-~~l~sg~~d-----~~i~i~d~~~~~-~~~~~  142 (288)
                      .+|||+.-+.   ..|.+.+.+.       .+..+..|+.|+|..-. .++|.|+.+     +.+.||...++. .|...
T Consensus       137 ~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kv  216 (361)
T KOG2445|consen  137 ILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKV  216 (361)
T ss_pred             EEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeee
Confidence            9999986432   3344444443       46778999999986432 356666555     488899876654 66665


Q ss_pred             EeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCC----------------ceeeeeeeccc
Q 036510          143 RIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNG----------------IWKMDCFPALQ  206 (288)
Q Consensus       143 ~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----------------~~~~~~~~~~~  206 (288)
                      ..+.+|+.+|+.|+|.|.....          -.+|++++.|| |+||++...                ....+.+..+.
T Consensus       217 a~L~d~~dpI~di~wAPn~Gr~----------y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~  285 (361)
T KOG2445|consen  217 AELPDHTDPIRDISWAPNIGRS----------YHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD  285 (361)
T ss_pred             hhcCCCCCcceeeeeccccCCc----------eeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeecc
Confidence            5667899999999999986321          16799999999 999999731                11234566788


Q ss_pred             cCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510          207 MHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE  245 (288)
Q Consensus       207 ~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~  245 (288)
                      +|...|+.+.|+-.    +..|+|.++||.||+|.....
T Consensus       286 ~H~~~VWrv~wNmt----GtiLsStGdDG~VRLWkany~  320 (361)
T KOG2445|consen  286 DHNGEVWRVRWNMT----GTILSSTGDDGCVRLWKANYN  320 (361)
T ss_pred             CCCCceEEEEEeee----eeEEeecCCCceeeehhhhhh
Confidence            99999999999885    588999999999999987654

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.3e-22  Score=182.22  Aligned_cols=246  Identities=18%  Similarity=0.275  Sum_probs=185.2

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCC
Q 036510            9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN   88 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~   88 (288)
                      +|+.+-+.|++.|+|..|.+++.|+.|++|+..... +.-.++.-|...|.+++-.    +++|++|+.+++|.++....
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-e~P~ti~~~g~~v~~ia~~----s~~f~~~s~~~tv~~y~fps   85 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE-EEPETIDISGELVSSIACY----SNHFLTGSEQNTVLRYKFPS   85 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc-cCCchhhccCceeEEEeec----ccceEEeeccceEEEeeCCC
Confidence            899999999999999999999999999999863321 1112233377788888742    67999999999999998765


Q ss_pred             CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceec
Q 036510           89 SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG  168 (288)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~  168 (288)
                      +..-   ..+....-++.+++|+.+  +..+|.|+.|-.|++-+.....+   .....+|..+|.+++|+|.+       
T Consensus        86 ~~~~---~iL~Rftlp~r~~~v~g~--g~~iaagsdD~~vK~~~~~D~s~---~~~lrgh~apVl~l~~~p~~-------  150 (933)
T KOG1274|consen   86 GEED---TILARFTLPIRDLAVSGS--GKMIAAGSDDTAVKLLNLDDSSQ---EKVLRGHDAPVLQLSYDPKG-------  150 (933)
T ss_pred             CCcc---ceeeeeeccceEEEEecC--CcEEEeecCceeEEEEeccccch---heeecccCCceeeeeEcCCC-------
Confidence            5421   223445678999999876  67899999999999988765433   34567899999999999997       


Q ss_pred             ccccCCCceeEEeecCCcEEEEEEeCCceeee---eeeccccC-CcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510          169 SGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMD---CFPALQMH-TDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR  244 (288)
Q Consensus       169 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~~~~~~~h-~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~  244 (288)
                             .+|++.+.||.|++||+.++.....   .......- ...+.-++|+|++    ..|+..+.|+.|++|+...
T Consensus       151 -------~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~----g~la~~~~d~~Vkvy~r~~  219 (933)
T KOG1274|consen  151 -------NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG----GTLAVPPVDNTVKVYSRKG  219 (933)
T ss_pred             -------CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCC----CeEEeeccCCeEEEEccCC
Confidence                   8999999999999999987631100   01111111 3346778999985    4799999999999998753


Q ss_pred             CCCcccceEe-eccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          245 EGDQWEGKVL-HDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       245 ~~~~~~~~~~-~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      -..  ...+. ..+...+..++|+|.|+|||+++.||.|.|||.
T Consensus       220 we~--~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv  261 (933)
T KOG1274|consen  220 WEL--QFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNV  261 (933)
T ss_pred             cee--heeecccccccceEEEEEcCCCcEEeeeccCCcEEEEec
Confidence            211  11221 223445889999999999999999999999995

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.91  E-value=1e-22  Score=179.46  Aligned_cols=270  Identities=25%  Similarity=0.424  Sum_probs=196.6

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCce-----eeEEEeccccCeEEEEecCCCCCCEEEEeeCCCc
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQ-----HLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGT   80 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~   80 (288)
                      ++-||++.|+++.|.|.+..|+|+|.|+++.+|.-+..++-     ++....|..+..++.-|+++  ++.+++-+.-|.
T Consensus       262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n--~~~ii~~g~~Gg  339 (764)
T KOG1063|consen  262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPN--SNVIIAHGRTGG  339 (764)
T ss_pred             hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCC--CCEEEEecccCc
Confidence            34599999999999999989999999999999986544332     23334455677899999865  789999999999


Q ss_pred             EEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeec-CCCCeeeEEeeccCCCCeeEEEeCC
Q 036510           81 VIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTAR-ADGGWDTSRIDQAHPVGVTSVSWAP  159 (288)
Q Consensus        81 v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~v~~i~~~p  159 (288)
                      .++|-..+...|.....+.+|.+.|..++|+|.  +.++++.+.|.+-|+|.-- +...|+.....+.|.-.++|+++-+
T Consensus       340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~ps--GeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn  417 (764)
T KOG1063|consen  340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPS--GEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN  417 (764)
T ss_pred             EEEEeccCccceeeccccccccccceeeeecCC--CCEEEEeccccceeeecccccccceeeecccccccccceeeehcc
Confidence            999985555556555667899999999999997  6789999999999998543 2233555555566666666666544


Q ss_pred             CCC------C---------------------------------Cce---ec-----------------------------
Q 036510          160 STA------P---------------------------------GAL---VG-----------------------------  168 (288)
Q Consensus       160 ~~~------~---------------------------------~~~---~~-----------------------------  168 (288)
                      ...      .                                 ++.   ++                             
T Consensus       418 ~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p  497 (764)
T KOG1063|consen  418 EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAP  497 (764)
T ss_pred             CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCc
Confidence            110      0                                 000   00                             


Q ss_pred             ---------------------------------ccccCCCceeEEeecCC-----cEEEEEEeCCceeeeeeeccccCCc
Q 036510          169 ---------------------------------SGFLDPVQKLCSGGCDN-----TVKVWKLYNGIWKMDCFPALQMHTD  210 (288)
Q Consensus       169 ---------------------------------~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~h~~  210 (288)
                                                       ....+++++++|+....     -|+||+..+  +  ..++.+.+|+-
T Consensus       498 ~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~--W--~~~~~L~~HsL  573 (764)
T KOG1063|consen  498 CELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN--W--LQVQELEGHSL  573 (764)
T ss_pred             hhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc--h--hhhheecccce
Confidence                                             00012345666654322     378898654  2  23457889999


Q ss_pred             ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCc-ccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          211 WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ-WEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       211 ~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~-~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      .|+-+.||||    +++|+++|.|+++.+|........ ..-...+.|..-|.++.|+||+.+|+++|.|++|+||.+
T Consensus       574 TVT~l~FSpd----g~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~  647 (764)
T KOG1063|consen  574 TVTRLAFSPD----GRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE  647 (764)
T ss_pred             EEEEEEECCC----CcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEec
Confidence            9999999998    489999999999999998643211 111224567777899999999999999999999999984

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.3e-22  Score=164.63  Aligned_cols=250  Identities=19%  Similarity=0.250  Sum_probs=169.7

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCC---ceee-------------------------------EEE
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNT---SQHL-------------------------------AKL   51 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~---~~~~-------------------------------~~~   51 (288)
                      .+.||.+.|++++|+.||++|++++.|++|+||++..-.   .+++                               +.+
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy  160 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY  160 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence            355899999999999999999999999999999984211   0000                               000


Q ss_pred             e-----------------------ccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEE
Q 036510           52 S-----------------------GHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSI  108 (288)
Q Consensus        52 ~-----------------------~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l  108 (288)
                      .                       -|+-.+-++...  ..+.+++|+|.|..|.+|+++. .   ....+......-+-.
T Consensus       161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA--~~~k~imsas~dt~i~lw~lkG-q---~L~~idtnq~~n~~a  234 (420)
T KOG2096|consen  161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA--GNAKYIMSASLDTKICLWDLKG-Q---LLQSIDTNQSSNYDA  234 (420)
T ss_pred             EeeecccCCCCcccccccccccchhcccceEEEeec--CCceEEEEecCCCcEEEEecCC-c---eeeeeccccccccce
Confidence            0                       122223333322  1367999999999999999873 2   222333333344567


Q ss_pred             EeccCCCCeEEEEEeCCCcEEEEeecC--CCCeee---EEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeec
Q 036510          109 DWAPHELGLCLACGSSDGNISVFTARA--DGGWDT---SRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC  183 (288)
Q Consensus       109 ~~~p~~~~~~l~sg~~d~~i~i~d~~~--~~~~~~---~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~  183 (288)
                      +++|+  |+.+++++.---+.+|.+-.  ++.++.   ...+++|...|..++|+|+.              ..++|.|.
T Consensus       235 avSP~--GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S--------------~r~vtvSk  298 (420)
T KOG2096|consen  235 AVSPD--GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS--------------TRAVTVSK  298 (420)
T ss_pred             eeCCC--CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc--------------ceeEEEec
Confidence            88998  78888888888899998642  233322   23467999999999999987              78999999


Q ss_pred             CCcEEEEEEeCC----ce--eeeee--eccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEee
Q 036510          184 DNTVKVWKLYNG----IW--KMDCF--PALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLH  255 (288)
Q Consensus       184 d~~i~iwd~~~~----~~--~~~~~--~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~  255 (288)
                      ||+++|||+.-.    +.  .++..  ........++ .+..+|++     .+++.+....++++..+..+...+.+  .
T Consensus       299 DG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~g-----~~lA~s~gs~l~~~~se~g~~~~~~e--~  370 (420)
T KOG2096|consen  299 DGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELSPSG-----DSLAVSFGSDLKVFASEDGKDYPELE--D  370 (420)
T ss_pred             CCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeCCCC-----cEEEeecCCceEEEEcccCccchhHH--H
Confidence            999999997421    10  01110  0112233344 67999974     35667777789999887643222222  2


Q ss_pred             ccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          256 DFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       256 ~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      -|+..|.+++|+|||++++++ .|+-++|..
T Consensus       371 ~h~~~Is~is~~~~g~~~atc-Gdr~vrv~~  400 (420)
T KOG2096|consen  371 IHSTTISSISYSSDGKYIATC-GDRYVRVIR  400 (420)
T ss_pred             hhcCceeeEEecCCCcEEeee-cceeeeeec
Confidence            356789999999999999988 578888764

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.91  E-value=1.1e-23  Score=179.81  Aligned_cols=237  Identities=17%  Similarity=0.277  Sum_probs=192.3

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN   90 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~   90 (288)
                      +.-+.+.++.|||+.|+.|+...++.|||+..++......+..-....++++.+++  .++..+|..||.|.|||+.+..
T Consensus       465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spD--akvcFsccsdGnI~vwDLhnq~  542 (705)
T KOG0639|consen  465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD--AKVCFSCCSDGNIAVWDLHNQT  542 (705)
T ss_pred             ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCc--cceeeeeccCCcEEEEEcccce
Confidence            45677888999999999999999999999987765445555544556788888865  7889999999999999998865


Q ss_pred             ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceeccc
Q 036510           91 EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG  170 (288)
Q Consensus        91 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~  170 (288)
                         .++.+.+|.+.+.||+++++  +..|=+|+.|+++|-||+|++.+.+.    ..+..+|.++..+|++         
T Consensus       543 ---~VrqfqGhtDGascIdis~d--GtklWTGGlDntvRcWDlregrqlqq----hdF~SQIfSLg~cP~~---------  604 (705)
T KOG0639|consen  543 ---LVRQFQGHTDGASCIDISKD--GTKLWTGGLDNTVRCWDLREGRQLQQ----HDFSSQIFSLGYCPTG---------  604 (705)
T ss_pred             ---eeecccCCCCCceeEEecCC--CceeecCCCccceeehhhhhhhhhhh----hhhhhhheecccCCCc---------
Confidence               67889999999999999998  56689999999999999998754322    1245779999999987         


Q ss_pred             ccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCccc
Q 036510          171 FLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWE  250 (288)
Q Consensus       171 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~  250 (288)
                           .-|+.|.+.+.+-+.-....     ..+.+..|.+-|.++.|++-    ++.+|+.+.|+.+..|..-..     
T Consensus       605 -----dWlavGMens~vevlh~skp-----~kyqlhlheScVLSlKFa~c----GkwfvStGkDnlLnawrtPyG-----  665 (705)
T KOG0639|consen  605 -----DWLAVGMENSNVEVLHTSKP-----EKYQLHLHESCVLSLKFAYC----GKWFVSTGKDNLLNAWRTPYG-----  665 (705)
T ss_pred             -----cceeeecccCcEEEEecCCc-----cceeecccccEEEEEEeccc----CceeeecCchhhhhhccCccc-----
Confidence                 67889999988877766543     23456678889999999985    578999999999999975322     


Q ss_pred             ceEeec--cccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          251 GKVLHD--FKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       251 ~~~~~~--~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                       ..+++  -.++|.++..|-|.++|++||.|+...||.+
T Consensus       666 -asiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  666 -ASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             -cceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence             22222  2368999999999999999999999999875

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=7.4e-23  Score=173.16  Aligned_cols=235  Identities=19%  Similarity=0.229  Sum_probs=184.2

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCC--
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN--   88 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~--   88 (288)
                      .+.|.++.-+|.|.+|+.|...+.+.+|.+.  ++..+..+.+|=.+|+++.|+.  ++.+|+|||.||.|.+|.+.+  
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWels--sG~LL~v~~aHYQ~ITcL~fs~--dgs~iiTgskDg~V~vW~l~~lv  156 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELS--SGILLNVLSAHYQSITCLKFSD--DGSHIITGSKDGAVLVWLLTDLV  156 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEec--cccHHHHHHhhccceeEEEEeC--CCcEEEecCCCccEEEEEEEeec
Confidence            4678899999999999988899999999995  4577888899999999999985  489999999999999997621  


Q ss_pred             ----CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510           89 ----SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG  164 (288)
Q Consensus        89 ----~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~  164 (288)
                          .......+.+..|.-+|+.+...+.+..-++++.+.|.++++||+..+.-+..    -..+..+.++..+|..   
T Consensus       157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlt----i~fp~si~av~lDpae---  229 (476)
T KOG0646|consen  157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLT----ITFPSSIKAVALDPAE---  229 (476)
T ss_pred             ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEE----EecCCcceeEEEcccc---
Confidence                11223456788999999999887765566799999999999999987632211    2357789999999976   


Q ss_pred             ceecccccCCCceeEEeecCCcEEEEEEeCCc------------eeeeeeeccccCCc--ceEEEEecCCCCCCCcEEEE
Q 036510          165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGI------------WKMDCFPALQMHTD--WVRDVAWAPNLGLPKSTIAS  230 (288)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~------------~~~~~~~~~~~h~~--~V~~v~~sp~~~~~~~~l~s  230 (288)
                                 +.+..|+.+|.|.+.++..-.            ...+.+..+.||.+  .|+|++.+-|    +++|++
T Consensus       230 -----------~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D----gtlLlS  294 (476)
T KOG0646|consen  230 -----------RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD----GTLLLS  294 (476)
T ss_pred             -----------cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC----ccEEEe
Confidence                       778899999999988875421            12345667889999  8999999998    489999


Q ss_pred             EeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEE
Q 036510          231 ASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILA  274 (288)
Q Consensus       231 ~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~  274 (288)
                      |+.||+++|||+.+++-   .+.+....++|+-+.+.|=-+-..
T Consensus       295 Gd~dg~VcvWdi~S~Q~---iRtl~~~kgpVtnL~i~~~~~~~~  335 (476)
T KOG0646|consen  295 GDEDGKVCVWDIYSKQC---IRTLQTSKGPVTNLQINPLERGII  335 (476)
T ss_pred             eCCCCCEEEEecchHHH---HHHHhhhccccceeEeecccccee
Confidence            99999999999987532   122233457888888876544333

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.91  E-value=6.1e-23  Score=181.61  Aligned_cols=248  Identities=13%  Similarity=0.190  Sum_probs=194.6

Q ss_pred             cccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCC-CCCEEEEeeCCCcEEEeecCC
Q 036510           10 HEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPK-FGSILASCSFDGTVIIWKEGN   88 (288)
Q Consensus        10 h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~s~d~~v~iwd~~~   88 (288)
                      -.-++.+++.+|+|++||+|..-|++++|++..-  +....+.+|...|.++.|+.+. ...+|+|+|.|.-|.|+|...
T Consensus       458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l--~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r  535 (1080)
T KOG1408|consen  458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL--EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR  535 (1080)
T ss_pred             cccceEEEEECCCcceecccCccCceEEEEehhh--hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence            3457889999999999999999999999999543  4566789999999999999653 456889999999999999864


Q ss_pred             CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccC---CCCeeEEEeCCCCCCCc
Q 036510           89 SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAH---PVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~---~~~v~~i~~~p~~~~~~  165 (288)
                        .+.++.++.+|...|+++.|.-.+-+..+++++.|+.|++=..+....-..+ ....|   ...+..++..|..    
T Consensus       536 --ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f-~r~t~t~~ktTlYDm~Vdp~~----  608 (1080)
T KOG1408|consen  536 --NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLF-PRHTQTLSKTTLYDMAVDPTS----  608 (1080)
T ss_pred             --ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceec-cccccccccceEEEeeeCCCc----
Confidence              3456778899999999999987765678999999998865333321111111 01111   2346677777765    


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecc---ccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEe
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPAL---QMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV  242 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~  242 (288)
                                ++++++..|+.|+|||+..+    ++.+.+   .+|.+..-.|...|.    +-|||+...|+++.++|.
T Consensus       609 ----------k~v~t~cQDrnirif~i~sg----Kq~k~FKgs~~~eG~lIKv~lDPS----giY~atScsdktl~~~Df  670 (1080)
T KOG1408|consen  609 ----------KLVVTVCQDRNIRIFDIESG----KQVKSFKGSRDHEGDLIKVILDPS----GIYLATSCSDKTLCFVDF  670 (1080)
T ss_pred             ----------ceEEEEecccceEEEecccc----ceeeeecccccCCCceEEEEECCC----ccEEEEeecCCceEEEEe
Confidence                      78999999999999999987    344444   456566677888886    478999999999999998


Q ss_pred             ecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          243 AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ....   ....+.+|..-|+.++|.+|=+.|+++++||.|-||++
T Consensus       671 ~sgE---cvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~l  712 (1080)
T KOG1408|consen  671 VSGE---CVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKL  712 (1080)
T ss_pred             ccch---hhhhhcCcchheeeeeecccchhheeecCCceEEEEEC
Confidence            7642   12456788899999999999999999999999999984

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=4.1e-23  Score=165.87  Aligned_cols=212  Identities=21%  Similarity=0.342  Sum_probs=162.1

Q ss_pred             eccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCce-----EEeEE-------eecCCCceeEEEeccCCCCeEE
Q 036510           52 SGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEW-----IKDHV-------FEDHKSSVNSIDWAPHELGLCL  119 (288)
Q Consensus        52 ~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~-----~~~~~-------~~~h~~~v~~l~~~p~~~~~~l  119 (288)
                      ..|.+.|+++...+ ..|++++||++||.|.+||+.+...+     +..+.       -.+|+..|.++-|-|.+.+ .+
T Consensus        40 r~HgGsvNsL~id~-tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG-mF  117 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDL-TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG-MF  117 (397)
T ss_pred             ccCCCccceeeecc-ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc-ee
Confidence            35889999999864 46999999999999999999765421     11111       1258889999999998755 58


Q ss_pred             EEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceee
Q 036510          120 ACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKM  199 (288)
Q Consensus       120 ~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  199 (288)
                      .+++.|.++++||..+-+....+.    .+..|.+-.|+|-..           ..-++++|..|-.|++=|+..|    
T Consensus       118 tssSFDhtlKVWDtnTlQ~a~~F~----me~~VYshamSp~a~-----------sHcLiA~gtr~~~VrLCDi~SG----  178 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTLQEAVDFK----MEGKVYSHAMSPMAM-----------SHCLIAAGTRDVQVRLCDIASG----  178 (397)
T ss_pred             ecccccceEEEeecccceeeEEee----cCceeehhhcChhhh-----------cceEEEEecCCCcEEEEeccCC----
Confidence            899999999999987643322222    234577778887542           1135778888889999999998    


Q ss_pred             eeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcc------------cceEeeccccCeEEEEee
Q 036510          200 DCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQW------------EGKVLHDFKTPVYRVSWS  267 (288)
Q Consensus       200 ~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~------------~~~~~~~~~~~i~~~~~s  267 (288)
                      .+-+.+.||.+.|.+|.|+|..   +-.|++||.|+.||+||++....+.            ..+.-.-|.+++.+++|+
T Consensus       179 s~sH~LsGHr~~vlaV~Wsp~~---e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t  255 (397)
T KOG4283|consen  179 SFSHTLSGHRDGVLAVEWSPSS---EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT  255 (397)
T ss_pred             cceeeeccccCceEEEEeccCc---eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec
Confidence            4667899999999999999975   4579999999999999998752210            000011245689999999


Q ss_pred             cCCCEEEEEeCCCcEEEeEc
Q 036510          268 LTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       268 pdg~~l~s~~~d~~v~~w~~  287 (288)
                      .||.++++.+.|..+++|+.
T Consensus       256 Sd~~~l~~~gtd~r~r~wn~  275 (397)
T KOG4283|consen  256 SDARYLASCGTDDRIRVWNM  275 (397)
T ss_pred             ccchhhhhccCccceEEeec
Confidence            99999999999999999985

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.91  E-value=1.5e-22  Score=186.39  Aligned_cols=221  Identities=24%  Similarity=0.400  Sum_probs=166.4

Q ss_pred             cccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCC----------------CCceeeEEEeccccCeEEEEecCCCCCCE
Q 036510            8 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGN----------------NTSQHLAKLSGHKGAVWEVAWAHPKFGSI   71 (288)
Q Consensus         8 ~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~----------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~   71 (288)
                      ..|.+.|.|+.|++||++||+||.|+.|.+|+...                +..+.+..+.+|...|.+++|+|+  +.+
T Consensus        66 ~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~--~~~  143 (942)
T KOG0973|consen   66 DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD--DSL  143 (942)
T ss_pred             ccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC--ccE
Confidence            37999999999999999999999999999998762                012467889999999999999974  899


Q ss_pred             EEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeec-----
Q 036510           72 LASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQ-----  146 (288)
Q Consensus        72 l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~-----  146 (288)
                      |+|+|.|++|.||+..+..   ....+.+|...|..+.|.|-  ++++|+-+.|++|++|.+.+   |...+...     
T Consensus       144 lvS~s~DnsViiwn~~tF~---~~~vl~~H~s~VKGvs~DP~--Gky~ASqsdDrtikvwrt~d---w~i~k~It~pf~~  215 (942)
T KOG0973|consen  144 LVSVSLDNSVIIWNAKTFE---LLKVLRGHQSLVKGVSWDPI--GKYFASQSDDRTLKVWRTSD---WGIEKSITKPFEE  215 (942)
T ss_pred             EEEecccceEEEEccccce---eeeeeecccccccceEECCc--cCeeeeecCCceEEEEEccc---ceeeEeeccchhh
Confidence            9999999999999987653   66778899999999999997  88999999999999998643   22222111     


Q ss_pred             -cCCCCeeEEEeCCCCCCCce--------------------ecccc-----------c------CC--------Cc----
Q 036510          147 -AHPVGVTSVSWAPSTAPGAL--------------------VGSGF-----------L------DP--------VQ----  176 (288)
Q Consensus       147 -~~~~~v~~i~~~p~~~~~~~--------------------~~~~~-----------~------~~--------~~----  176 (288)
                       .......+++|+|++.-.+.                    +...+           +      .+        .+    
T Consensus       216 ~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~  295 (942)
T KOG0973|consen  216 SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYC  295 (942)
T ss_pred             CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceE
Confidence             11234678888888742110                    00000           0      00        11    


Q ss_pred             eeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510          177 KLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE  245 (288)
Q Consensus       177 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~  245 (288)
                      .+++||.|++|.||.... .+++-.++.+  ....|.+++|+||+    ..|.++|.||+|.+...+..
T Consensus       296 i~AvgSqDrSlSVW~T~~-~RPl~vi~~l--f~~SI~DmsWspdG----~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  296 IAAVGSQDRSLSVWNTAL-PRPLFVIHNL--FNKSIVDMSWSPDG----FSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             EEEEecCCccEEEEecCC-CCchhhhhhh--hcCceeeeeEcCCC----CeEEEEecCCeEEEEEcchH
Confidence            577999999999999743 2222223333  34459999999985    57889999999999988753

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.91  E-value=1.9e-23  Score=169.84  Aligned_cols=242  Identities=22%  Similarity=0.274  Sum_probs=194.8

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEe-ccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecC
Q 036510            9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLS-GHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEG   87 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~   87 (288)
                      -|+++|.+++||.|...||+|+.||.|++|.+.  ++.+++.+. +|+..|+++.|+.+  +..++|+|.|.+++|..+.
T Consensus       261 Mmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~--tG~ClRrFdrAHtkGvt~l~FSrD--~SqiLS~sfD~tvRiHGlK  336 (508)
T KOG0275|consen  261 MMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE--TGQCLRRFDRAHTKGVTCLSFSRD--NSQILSASFDQTVRIHGLK  336 (508)
T ss_pred             ecccceEEEeecccHHHhhccCcCCcEEEEEEe--cchHHHHhhhhhccCeeEEEEccC--cchhhcccccceEEEeccc
Confidence            478999999999999999999999999999984  457888887 89999999999975  7899999999999999998


Q ss_pred             CCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCcee
Q 036510           88 NSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV  167 (288)
Q Consensus        88 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~  167 (288)
                      +++   ..+.+.+|..-|+...|.++  +..+++++.||++++|+.++..+.+.++.. +....|.++-.-|..+     
T Consensus       337 SGK---~LKEfrGHsSyvn~a~ft~d--G~~iisaSsDgtvkvW~~KtteC~~Tfk~~-~~d~~vnsv~~~PKnp-----  405 (508)
T KOG0275|consen  337 SGK---CLKEFRGHSSYVNEATFTDD--GHHIISASSDGTVKVWHGKTTECLSTFKPL-GTDYPVNSVILLPKNP-----  405 (508)
T ss_pred             cch---hHHHhcCccccccceEEcCC--CCeEEEecCCccEEEecCcchhhhhhccCC-CCcccceeEEEcCCCC-----
Confidence            876   45668899999999999998  678999999999999999887665554432 2345677777777654     


Q ss_pred             cccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccc----cCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEee
Q 036510          168 GSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQ----MHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA  243 (288)
Q Consensus       168 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~  243 (288)
                              ..++.+...+++.|.++...     .+.++.    ...+.|.+ ..||.    +..+-+.+.|+.+..|...
T Consensus       406 --------eh~iVCNrsntv~imn~qGQ-----vVrsfsSGkREgGdFi~~-~lSpk----GewiYcigED~vlYCF~~~  467 (508)
T KOG0275|consen  406 --------EHFIVCNRSNTVYIMNMQGQ-----VVRSFSSGKREGGDFINA-ILSPK----GEWIYCIGEDGVLYCFSVL  467 (508)
T ss_pred             --------ceEEEEcCCCeEEEEeccce-----EEeeeccCCccCCceEEE-EecCC----CcEEEEEccCcEEEEEEee
Confidence                    34666777788998887542     233332    23345655 67886    3678899999999999987


Q ss_pred             cCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          244 REGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       244 ~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      +.+.   ...+..|+..+..++-+|..+.||+=+.|+.+++|+
T Consensus       468 sG~L---E~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  468 SGKL---ERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cCce---eeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            6532   244556677889999999999999999999999996

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.91  E-value=2.8e-22  Score=160.64  Aligned_cols=255  Identities=22%  Similarity=0.337  Sum_probs=187.5

Q ss_pred             ccccccccceEEEEEcCCCCEEEEeeCC--------CcEEEEEeCCCC-------ceeeEEEe-ccccCeEEEEecCCCC
Q 036510            5 KIETGHEDTVHDVAMDYYGKRLATASSD--------YSIKIIGVGNNT-------SQHLAKLS-GHKGAVWEVAWAHPKF   68 (288)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~g~~l~s~~~d--------~~i~lwd~~~~~-------~~~~~~~~-~h~~~v~~~~~~~~~~   68 (288)
                      +.+..|-+.|..++-+|..+.|++..+.        -.+.||.+..+-       .+++..|. .+.+.|.++.|-|+  
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn--  134 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN--  134 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC--
Confidence            4566889999999999866555544433        337789875332       23455555 56678999999763  


Q ss_pred             CCEEEEeeCCCcEEEeecCCCCceEEe---EEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEee
Q 036510           69 GSILASCSFDGTVIIWKEGNSNEWIKD---HVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRID  145 (288)
Q Consensus        69 ~~~l~s~s~d~~v~iwd~~~~~~~~~~---~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~  145 (288)
                      +..+++-. |..|.+|++..+.+....   ..-.+++...++-+|+|+..+..+++. .|++++.||+|++...  ..+.
T Consensus       135 s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~--~sI~  210 (370)
T KOG1007|consen  135 SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKN--NSIE  210 (370)
T ss_pred             CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhh--cchh
Confidence            67777655 899999998765431110   001135667888899997767766654 6899999999976432  3456


Q ss_pred             ccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCC
Q 036510          146 QAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPK  225 (288)
Q Consensus       146 ~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~  225 (288)
                      .+|.-.|..++|+|+..             ..|+|++.|+.|+|||.+...   ..+.++.+|..+|++|.|+|.-   +
T Consensus       211 dAHgq~vrdlDfNpnkq-------------~~lvt~gDdgyvriWD~R~tk---~pv~el~~HsHWvW~VRfn~~h---d  271 (370)
T KOG1007|consen  211 DAHGQRVRDLDFNPNKQ-------------HILVTCGDDGYVRIWDTRKTK---FPVQELPGHSHWVWAVRFNPEH---D  271 (370)
T ss_pred             hhhcceeeeccCCCCce-------------EEEEEcCCCccEEEEeccCCC---ccccccCCCceEEEEEEecCcc---c
Confidence            68888899999999863             689999999999999998754   3466789999999999999974   6


Q ss_pred             cEEEEEeCCCcEEEEEeecCC---C--------------cc---------cceEeeccccCeEEEEeec-CCCEEEEEeC
Q 036510          226 STIASASEDGKVIIWTVAREG---D--------------QW---------EGKVLHDFKTPVYRVSWSL-TGNILAVADG  278 (288)
Q Consensus       226 ~~l~s~s~D~~i~iw~~~~~~---~--------------~~---------~~~~~~~~~~~i~~~~~sp-dg~~l~s~~~  278 (288)
                      ++|++||.|..|.+|....-.   +              ..         ....+.+|+..|++++||. |--+||+-|-
T Consensus       272 qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSY  351 (370)
T KOG1007|consen  272 QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSY  351 (370)
T ss_pred             eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEecc
Confidence            799999999999999875421   0              00         0112345778899999996 5678999999


Q ss_pred             CCcEEE
Q 036510          279 NNNVTL  284 (288)
Q Consensus       279 d~~v~~  284 (288)
                      ||.+.|
T Consensus       352 DGRviI  357 (370)
T KOG1007|consen  352 DGRVII  357 (370)
T ss_pred             CceEEe
Confidence            999866

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=8.4e-23  Score=171.87  Aligned_cols=212  Identities=23%  Similarity=0.349  Sum_probs=165.8

Q ss_pred             ccccccceEEEEEcCC-CCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            7 ETGHEDTVHDVAMDYY-GKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~-g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      .++|+++|-.++|+.. .+.|||||.|.+|++||++.  +++..++..|.+.|.++.|.+ ..+.+|++||.|++|++.|
T Consensus       239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~--g~p~~s~~~~~k~Vq~l~wh~-~~p~~LLsGs~D~~V~l~D  315 (463)
T KOG0270|consen  239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT--GKPKSSITHHGKKVQTLEWHP-YEPSVLLSGSYDGTVALKD  315 (463)
T ss_pred             cccchHHHHHHHhccccceeEEecCCCceEEEEEcCC--CCcceehhhcCCceeEEEecC-CCceEEEeccccceEEeee
Confidence            4589999999999875 47899999999999999964  467788888999999999965 4689999999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      .+..........+   .+.|-.+.|+|.. ...+.++..||+++-+|+|..+  .+.-..++|..+|..|.+++..+   
T Consensus       316 ~R~~~~s~~~wk~---~g~VEkv~w~~~s-e~~f~~~tddG~v~~~D~R~~~--~~vwt~~AHd~~ISgl~~n~~~p---  386 (463)
T KOG0270|consen  316 CRDPSNSGKEWKF---DGEVEKVAWDPHS-ENSFFVSTDDGTVYYFDIRNPG--KPVWTLKAHDDEISGLSVNIQTP---  386 (463)
T ss_pred             ccCccccCceEEe---ccceEEEEecCCC-ceeEEEecCCceEEeeecCCCC--CceeEEEeccCCcceEEecCCCC---
Confidence            9854332222233   4679999999975 5568888999999999999875  33456689999999999998775   


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE  245 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~  245 (288)
                                ++++|+|.|+.+++|++.....  +.+......-+...|.++.|+-   ...+|.|+.-+.++|||+...
T Consensus       387 ----------~~l~t~s~d~~Vklw~~~~~~~--~~v~~~~~~~~rl~c~~~~~~~---a~~la~GG~k~~~~vwd~~~~  451 (463)
T KOG0270|consen  387 ----------GLLSTASTDKVVKLWKFDVDSP--KSVKEHSFKLGRLHCFALDPDV---AFTLAFGGEKAVLRVWDIFTN  451 (463)
T ss_pred             ----------cceeeccccceEEEEeecCCCC--cccccccccccceeecccCCCc---ceEEEecCccceEEEeecccC
Confidence                      7899999999999999864321  1112211112236777888874   467888888889999998753

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=1.2e-23  Score=173.11  Aligned_cols=210  Identities=19%  Similarity=0.237  Sum_probs=153.5

Q ss_pred             eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC
Q 036510           46 QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD  125 (288)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d  125 (288)
                      +.+.+|.||.+.|.+++-.| ..-..++|||.||.|+|||+.+-.   +..++..|.+.|..|++.-    ..++++++|
T Consensus        57 PFv~~L~gHrdGV~~lakhp-~~ls~~aSGs~DG~VkiWnlsqR~---~~~~f~AH~G~V~Gi~v~~----~~~~tvgdD  128 (433)
T KOG0268|consen   57 PFVGSLDGHRDGVSCLAKHP-NKLSTVASGSCDGEVKIWNLSQRE---CIRTFKAHEGLVRGICVTQ----TSFFTVGDD  128 (433)
T ss_pred             cchhhccccccccchhhcCc-chhhhhhccccCceEEEEehhhhh---hhheeecccCceeeEEecc----cceEEecCC
Confidence            34788899999999999643 334678999999999999997655   4567889999999999875    236788899


Q ss_pred             CcEEEEeecCCC---------------------------CeeeE--------EeeccCCCCeeEEEeCCCCCCCceeccc
Q 036510          126 GNISVFTARADG---------------------------GWDTS--------RIDQAHPVGVTSVSWAPSTAPGALVGSG  170 (288)
Q Consensus       126 ~~i~i~d~~~~~---------------------------~~~~~--------~~~~~~~~~v~~i~~~p~~~~~~~~~~~  170 (288)
                      ++|+.|.+.-+.                           ....+        ..+.--...|.++.|+|..         
T Consensus       129 KtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvE---------  199 (433)
T KOG0268|consen  129 KTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVE---------  199 (433)
T ss_pred             cceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCc---------
Confidence            999999742110                           00000        0011112335555555554         


Q ss_pred             ccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCccc
Q 036510          171 FLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWE  250 (288)
Q Consensus       171 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~  250 (288)
                          ...|++++.|++|.|||++.+.-..+.+..+     .-+.++|+|..    --|++|+.|-.+..+|.+....+  
T Consensus       200 ----TsILas~~sDrsIvLyD~R~~~Pl~KVi~~m-----RTN~IswnPea----fnF~~a~ED~nlY~~DmR~l~~p--  264 (433)
T KOG0268|consen  200 ----TSILASCASDRSIVLYDLRQASPLKKVILTM-----RTNTICWNPEA----FNFVAANEDHNLYTYDMRNLSRP--  264 (433)
T ss_pred             ----chheeeeccCCceEEEecccCCccceeeeec-----cccceecCccc----cceeeccccccceehhhhhhccc--
Confidence                3678999999999999999874332332222     23789999953    46999999999999999864322  


Q ss_pred             ceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          251 GKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       251 ~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      .....+|.+.|++++|||.|+.|++||-|++||||..
T Consensus       265 ~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~  301 (433)
T KOG0268|consen  265 LNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPV  301 (433)
T ss_pred             chhhcccceeEEEeccCCCcchhccccccceEEEeec
Confidence            2344567788999999999999999999999999974

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.90  E-value=2.5e-22  Score=175.66  Aligned_cols=255  Identities=18%  Similarity=0.258  Sum_probs=171.7

Q ss_pred             ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510            7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE   86 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~   86 (288)
                      ...|..+|.+++|-|...+|++++.|.++++||+..........+-||...|.++||.+. +...|++|+.||.|.|||+
T Consensus        96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~-n~~vF~tGgRDg~illWD~  174 (720)
T KOG0321|consen   96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPT-NPAVFCTGGRDGEILLWDC  174 (720)
T ss_pred             cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccC-CCcceeeccCCCcEEEEEE
Confidence            347999999999999668899999999999999975432223348899999999999764 6889999999999999998


Q ss_pred             CCCC----------------c---e-----EEeEEeecCCCceeE---EEeccCCCCeEEEEEeC-CCcEEEEeecCCCC
Q 036510           87 GNSN----------------E---W-----IKDHVFEDHKSSVNS---IDWAPHELGLCLACGSS-DGNISVFTARADGG  138 (288)
Q Consensus        87 ~~~~----------------~---~-----~~~~~~~~h~~~v~~---l~~~p~~~~~~l~sg~~-d~~i~i~d~~~~~~  138 (288)
                      +-..                +   .     ...+....+...|.+   +-+..|+  ..||+++. |+.|++||+|....
T Consensus       175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe--~tlaSaga~D~~iKVWDLRk~~~  252 (720)
T KOG0321|consen  175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE--STLASAGAADSTIKVWDLRKNYT  252 (720)
T ss_pred             eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc--ceeeeccCCCcceEEEeeccccc
Confidence            5322                0   0     000112234444554   4444553  35666655 99999999997532


Q ss_pred             ee---eEEeecc--C---CCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCc
Q 036510          139 WD---TSRIDQA--H---PVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTD  210 (288)
Q Consensus       139 ~~---~~~~~~~--~---~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~  210 (288)
                      ..   +......  |   ..++.++.....+.             .++|++. |++|.+||+..-.  +..+..+.++..
T Consensus       253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt-------------~L~AsCt-D~sIy~ynm~s~s--~sP~~~~sg~~~  316 (720)
T KOG0321|consen  253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT-------------YLFASCT-DNSIYFYNMRSLS--ISPVAEFSGKLN  316 (720)
T ss_pred             ccccCCCcccCccCcccceeeeEEEEecCCCC-------------eEEEEec-CCcEEEEeccccC--cCchhhccCccc
Confidence            11   1111111  2   12345555444442             4566665 9999999997521  112223333322


Q ss_pred             ---ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecC-CCEEEEEeCCCcEEEeE
Q 036510          211 ---WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLT-GNILAVADGNNNVTLWE  286 (288)
Q Consensus       211 ---~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spd-g~~l~s~~~d~~v~~w~  286 (288)
                         +|.+ ..+|+    +.+|++|+.|....+|.+......  ...+.+|.-.|+.++|.|. -.-+++++.|.+++||+
T Consensus       317 ~sf~vks-~lSpd----~~~l~SgSsd~~ayiw~vs~~e~~--~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~  389 (720)
T KOG0321|consen  317 SSFYVKS-ELSPD----DCSLLSGSSDEQAYIWVVSSPEAP--PALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWR  389 (720)
T ss_pred             ceeeeee-ecCCC----CceEeccCCCcceeeeeecCccCC--hhhhhCcceEEEEEeeccccCCCceeeccCcceEEEe
Confidence               3333 56676    478999999999999999865432  2344566677999999985 34567779999999998


Q ss_pred             c
Q 036510          287 E  287 (288)
Q Consensus       287 ~  287 (288)
                      +
T Consensus       390 l  390 (720)
T KOG0321|consen  390 L  390 (720)
T ss_pred             c
Confidence            5

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.90  E-value=1.3e-22  Score=173.58  Aligned_cols=219  Identities=17%  Similarity=0.224  Sum_probs=152.9

Q ss_pred             eEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCc-eE-EeEEeecCCCceeEEEeccCCCCeEEEEEeCC
Q 036510           48 LAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNE-WI-KDHVFEDHKSSVNSIDWAPHELGLCLACGSSD  125 (288)
Q Consensus        48 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~-~~-~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d  125 (288)
                      -.++.+|+..|.++++.++  |..|+|||.|-+|++||+..-.. .. .....+-....|+++.|+|.+...++++|  .
T Consensus       160 Ei~l~hgtk~Vsal~~Dp~--GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg--~  235 (641)
T KOG0772|consen  160 EIQLKHGTKIVSALAVDPS--GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG--S  235 (641)
T ss_pred             eEeccCCceEEEEeeecCC--CceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec--C
Confidence            4567899999999998754  99999999999999999742111 00 00112234457999999997543344444  4


Q ss_pred             CcEEEEeecCCCCeeeE----------EeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCC
Q 036510          126 GNISVFTARADGGWDTS----------RIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNG  195 (288)
Q Consensus       126 ~~i~i~d~~~~~~~~~~----------~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  195 (288)
                      -..+|+|=. +..+...          ...++|...+++-.|.|...             ..++|++.|+++||||+...
T Consensus       236 aqakl~DRd-G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k-------------~~FlT~s~DgtlRiWdv~~~  301 (641)
T KOG0772|consen  236 AQAKLLDRD-GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNK-------------EEFLTCSYDGTLRIWDVNNT  301 (641)
T ss_pred             cceeEEccC-CceeeeeeccchhhhhhhccCCceeeeeccccccCcc-------------cceEEecCCCcEEEEecCCc
Confidence            467777632 2111111          12467888999999999975             67899999999999999764


Q ss_pred             ceeeeeeecc--ccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccc--eEeeccccCeEEEEeecCCC
Q 036510          196 IWKMDCFPAL--QMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEG--KVLHDFKTPVYRVSWSLTGN  271 (288)
Q Consensus       196 ~~~~~~~~~~--~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~--~~~~~~~~~i~~~~~spdg~  271 (288)
                      ....+.+...  .+..-.+..+.|+|++    ..||+|..||.|.+|+.........-  ...|..+..|++++||+||+
T Consensus       302 k~q~qVik~k~~~g~Rv~~tsC~~nrdg----~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~  377 (641)
T KOG0772|consen  302 KSQLQVIKTKPAGGKRVPVTSCAWNRDG----KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN  377 (641)
T ss_pred             hhheeEEeeccCCCcccCceeeecCCCc----chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc
Confidence            3222222221  3444468889999985    67999999999999996432211111  11122234799999999999


Q ss_pred             EEEEEeCCCcEEEeEcC
Q 036510          272 ILAVADGNNNVTLWEEA  288 (288)
Q Consensus       272 ~l~s~~~d~~v~~w~~~  288 (288)
                      +|++=+.|++++|||++
T Consensus       378 ~LlSRg~D~tLKvWDLr  394 (641)
T KOG0772|consen  378 YLLSRGFDDTLKVWDLR  394 (641)
T ss_pred             hhhhccCCCceeeeecc
Confidence            99999999999999964

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.90  E-value=2.2e-22  Score=171.80  Aligned_cols=244  Identities=19%  Similarity=0.293  Sum_probs=186.9

Q ss_pred             cccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCC-ceeeEEEecc--ccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510            8 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNT-SQHLAKLSGH--KGAVWEVAWAHPKFGSILASCSFDGTVIIW   84 (288)
Q Consensus         8 ~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~-~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw   84 (288)
                      ..|..-|..+.+|...+++.+|+.. -|+|||+..+. ...+.+|..-  ..-|.++...+  +|+.|+.|+.-.++.||
T Consensus       416 L~HGEvVcAvtIS~~trhVyTgGkg-cVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p--dgrtLivGGeastlsiW  492 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTRHVYTGGKG-CVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP--DGRTLIVGGEASTLSIW  492 (705)
T ss_pred             hccCcEEEEEEecCCcceeEecCCC-eEEEeeccCCCCCCccccccccCcccceeeeEecC--CCceEEeccccceeeee
Confidence            3688888888899888999998865 68999996432 2223333322  33466777665  49999999999999999


Q ss_pred             ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510           85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG  164 (288)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~  164 (288)
                      |+...+.-++ ..+..-.-.+++|+.+||  .++..++..||+|+|||+++.   ..++..++|++++.||+.++++   
T Consensus       493 DLAapTprik-aeltssapaCyALa~spD--akvcFsccsdGnI~vwDLhnq---~~VrqfqGhtDGascIdis~dG---  563 (705)
T KOG0639|consen  493 DLAAPTPRIK-AELTSSAPACYALAISPD--AKVCFSCCSDGNIAVWDLHNQ---TLVRQFQGHTDGASCIDISKDG---  563 (705)
T ss_pred             eccCCCcchh-hhcCCcchhhhhhhcCCc--cceeeeeccCCcEEEEEcccc---eeeecccCCCCCceeEEecCCC---
Confidence            9976543221 122222345778899998  456677788999999999864   2356678999999999999987   


Q ss_pred             ceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510          165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR  244 (288)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~  244 (288)
                                 ..|.||+-|++||.||++++..    +.. ....+.|.++.++|+.    ..|+.|=..+.+.+-..+.
T Consensus       564 -----------tklWTGGlDntvRcWDlregrq----lqq-hdF~SQIfSLg~cP~~----dWlavGMens~vevlh~sk  623 (705)
T KOG0639|consen  564 -----------TKLWTGGLDNTVRCWDLREGRQ----LQQ-HDFSSQIFSLGYCPTG----DWLAVGMENSNVEVLHTSK  623 (705)
T ss_pred             -----------ceeecCCCccceeehhhhhhhh----hhh-hhhhhhheecccCCCc----cceeeecccCcEEEEecCC
Confidence                       7899999999999999998631    111 2235579999999984    5799999999998887664


Q ss_pred             CCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          245 EGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       245 ~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      .    ++..++.|.+.|.+++|.+-|++|++.+.|+.+..|++
T Consensus       624 p----~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrt  662 (705)
T KOG0639|consen  624 P----EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT  662 (705)
T ss_pred             c----cceeecccccEEEEEEecccCceeeecCchhhhhhccC
Confidence            3    34567788899999999999999999999999999974

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=6.1e-24  Score=188.01  Aligned_cols=222  Identities=23%  Similarity=0.359  Sum_probs=178.2

Q ss_pred             CEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCC
Q 036510           24 KRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKS  103 (288)
Q Consensus        24 ~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~  103 (288)
                      -.++....+-.+++||...        +..|...|.++..-  ..++.+++|+.|-.+.+|.+....   ....+.+|..
T Consensus         5 ~~~m~~~~~t~Lr~~~~~~--------~~~hsaav~~lk~~--~s~r~~~~Gg~~~k~~L~~i~kp~---~i~S~~~hes   71 (825)
T KOG0267|consen    5 EFLMKTKRATKLRVWDTRE--------FVAHSAAVGCLKIR--KSSRSLVTGGEDEKVNLWAIGKPN---AITSLTGHES   71 (825)
T ss_pred             cccceeeeeeccccccchh--------hhhhhhhhceeeee--ccceeeccCCCceeeccccccCCc---hhheeeccCC
Confidence            3455555566677777532        23577777777752  237899999999999999875443   2334789999


Q ss_pred             ceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeec
Q 036510          104 SVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC  183 (288)
Q Consensus       104 ~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~  183 (288)
                      +|.||.|++.  ..++++|+.+|+|++||+.+..   .++.+.+|...+.++.|+|-+              .++++|+.
T Consensus        72 pIeSl~f~~~--E~LlaagsasgtiK~wDleeAk---~vrtLtgh~~~~~sv~f~P~~--------------~~~a~gSt  132 (825)
T KOG0267|consen   72 PIESLTFDTS--ERLLAAGSASGTIKVWDLEEAK---IVRTLTGHLLNITSVDFHPYG--------------EFFASGST  132 (825)
T ss_pred             cceeeecCcc--hhhhcccccCCceeeeehhhhh---hhhhhhccccCcceeeeccce--------------EEeccccc
Confidence            9999999998  4679999999999999998653   245667899999999999987              67899999


Q ss_pred             CCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEE
Q 036510          184 DNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYR  263 (288)
Q Consensus       184 d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~  263 (288)
                      |..+++||.+..    -|.+.+.+|...|..+.|+|++    .++++|++|.+++|||.....   ....+..|.+++.+
T Consensus       133 dtd~~iwD~Rk~----Gc~~~~~s~~~vv~~l~lsP~G----r~v~~g~ed~tvki~d~~agk---~~~ef~~~e~~v~s  201 (825)
T KOG0267|consen  133 DTDLKIWDIRKK----GCSHTYKSHTRVVDVLRLSPDG----RWVASGGEDNTVKIWDLTAGK---LSKEFKSHEGKVQS  201 (825)
T ss_pred             cccceehhhhcc----CceeeecCCcceeEEEeecCCC----ceeeccCCcceeeeecccccc---cccccccccccccc
Confidence            999999999843    4778888999999999999984    789999999999999986431   11223445689999


Q ss_pred             EEeecCCCEEEEEeCCCcEEEeEcC
Q 036510          264 VSWSLTGNILAVADGNNNVTLWEEA  288 (288)
Q Consensus       264 ~~~spdg~~l~s~~~d~~v~~w~~~  288 (288)
                      +.|+|..-.+++|++|++|++||++
T Consensus       202 le~hp~e~Lla~Gs~d~tv~f~dle  226 (825)
T KOG0267|consen  202 LEFHPLEVLLAPGSSDRTVRFWDLE  226 (825)
T ss_pred             cccCchhhhhccCCCCceeeeeccc
Confidence            9999999999999999999999964

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.89  E-value=5.8e-21  Score=168.54  Aligned_cols=257  Identities=20%  Similarity=0.300  Sum_probs=189.0

Q ss_pred             cccccccceEEEEEcCCCC---EEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEE-eeCCCcE
Q 036510            6 IETGHEDTVHDVAMDYYGK---RLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILAS-CSFDGTV   81 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~---~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s-~s~d~~v   81 (288)
                      .+.||+.+|+++.+-|+..   +++||+.|+.|.+|.+..+-...+.++.+|...+.++.-     .....+ .+.|+++
T Consensus        49 ~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a-----~~~~~~~~~ad~~v  123 (764)
T KOG1063|consen   49 TLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVA-----RSSVMTCKAADGTV  123 (764)
T ss_pred             eccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEe-----eeeEEEeeccCceE
Confidence            4669999999999988776   899999999999999864444667888888877766552     223333 3789999


Q ss_pred             EEeecCCCC-----------------------------------------------ceEEeEEeecCCCceeEEEeccCC
Q 036510           82 IIWKEGNSN-----------------------------------------------EWIKDHVFEDHKSSVNSIDWAPHE  114 (288)
Q Consensus        82 ~iwd~~~~~-----------------------------------------------~~~~~~~~~~h~~~v~~l~~~p~~  114 (288)
                      .+|+..+.+                                               .+.....+.+|.+.|.+++|....
T Consensus       124 ~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~  203 (764)
T KOG1063|consen  124 SVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLG  203 (764)
T ss_pred             EEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccC
Confidence            999873222                                               011223466899999999997654


Q ss_pred             C-CeEEEEEeCCCcEEEEeecCCCC------------------ee---eE-------EeeccCCCCeeEEEeCCCCCCCc
Q 036510          115 L-GLCLACGSSDGNISVFTARADGG------------------WD---TS-------RIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus       115 ~-~~~l~sg~~d~~i~i~d~~~~~~------------------~~---~~-------~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      . ..+||++++|.+||||.+.....                  ..   ..       ..+++|.+-|.++.|.|..    
T Consensus       204 ~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~----  279 (764)
T KOG1063|consen  204 GDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEG----  279 (764)
T ss_pred             CCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccch----
Confidence            3 56899999999999998753220                  00   00       1246899999999999986    


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCC--ceeee-eeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEe
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNG--IWKMD-CFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV  242 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~-~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~  242 (288)
                                ..|.++|.|+++.+|...+.  .|.-. .+-.+.|....-....|+|++    +.|++-+.-|..++|..
T Consensus       280 ----------~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~----~~ii~~g~~Gg~hlWkt  345 (764)
T KOG1063|consen  280 ----------LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS----NVIIAHGRTGGFHLWKT  345 (764)
T ss_pred             ----------hhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC----CEEEEecccCcEEEEec
Confidence                      46889999999999987543  44311 223334444456788999985    68999999999999983


Q ss_pred             ecCCCcccc-eEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          243 AREGDQWEG-KVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       243 ~~~~~~~~~-~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      ..+ ..+.. ..+.+|-+.|..++|+|.|++|++++.|.|.||+-
T Consensus       346 ~d~-~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa  389 (764)
T KOG1063|consen  346 KDK-TFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFA  389 (764)
T ss_pred             cCc-cceeeccccccccccceeeeecCCCCEEEEeccccceeeec
Confidence            332 22322 33467778899999999999999999999999973

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.3e-22  Score=187.74  Aligned_cols=245  Identities=20%  Similarity=0.389  Sum_probs=186.5

Q ss_pred             cceEEEEEcCCCCE----EEEeeCCCcEEEEEeCC----CCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510           12 DTVHDVAMDYYGKR----LATASSDYSIKIIGVGN----NTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVII   83 (288)
Q Consensus        12 ~~v~~~~~s~~g~~----l~s~~~d~~i~lwd~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i   83 (288)
                      ..-+.+.|.+.|..    |+.|..||.|-+||...    ...+.+.+...|++.|.++.|++. .+++|+||+.||.|.|
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~-q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPF-QGNLLASGADDGEILI  143 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeecccc-CCceeeccCCCCcEEE
Confidence            34567888887755    88888999999998753    233557888899999999999875 4789999999999999


Q ss_pred             eecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCC--CCeeEEEeCCCC
Q 036510           84 WKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHP--VGVTSVSWAPST  161 (288)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~--~~v~~i~~~p~~  161 (288)
                      ||+.+..+..... -......|.+++|+... ..+|++++.+|+..|||+|.....-   ....+.  ..+..+.|+|+.
T Consensus       144 WDlnn~~tP~~~~-~~~~~~eI~~lsWNrkv-qhILAS~s~sg~~~iWDlr~~~pii---~ls~~~~~~~~S~l~WhP~~  218 (1049)
T KOG0307|consen  144 WDLNKPETPFTPG-SQAPPSEIKCLSWNRKV-SHILASGSPSGRAVIWDLRKKKPII---KLSDTPGRMHCSVLAWHPDH  218 (1049)
T ss_pred             eccCCcCCCCCCC-CCCCcccceEeccchhh-hHHhhccCCCCCceeccccCCCccc---ccccCCCccceeeeeeCCCC
Confidence            9997644221110 11245689999999753 6689999999999999999764321   112222  347789999997


Q ss_pred             CCCceecccccCCCceeEEeecCC---cEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEE
Q 036510          162 APGALVGSGFLDPVQKLCSGGCDN---TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVI  238 (288)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~  238 (288)
                      .             ..+++++.|.   .|.+||+|...   ...+.+.+|...|.++.|++..   ..+++|++.|+.|.
T Consensus       219 a-------------Tql~~As~dd~~PviqlWDlR~as---sP~k~~~~H~~GilslsWc~~D---~~lllSsgkD~~ii  279 (1049)
T KOG0307|consen  219 A-------------TQLLVASGDDSAPVIQLWDLRFAS---SPLKILEGHQRGILSLSWCPQD---PRLLLSSGKDNRII  279 (1049)
T ss_pred             c-------------eeeeeecCCCCCceeEeecccccC---CchhhhcccccceeeeccCCCC---chhhhcccCCCCee
Confidence            4             4555555554   48999998754   2345678999999999999973   57899999999999


Q ss_pred             EEEeecCCCcccceEeecc---ccCeEEEEeecCCC-EEEEEeCCCcEEEeEc
Q 036510          239 IWTVAREGDQWEGKVLHDF---KTPVYRVSWSLTGN-ILAVADGNNNVTLWEE  287 (288)
Q Consensus       239 iw~~~~~~~~~~~~~~~~~---~~~i~~~~~spdg~-~l~s~~~d~~v~~w~~  287 (288)
                      +|+.+..      +.+.++   ++++..+.|.|... .|++++-||.|.|+.+
T Consensus       280 ~wN~~tg------Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl  326 (1049)
T KOG0307|consen  280 CWNPNTG------EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSL  326 (1049)
T ss_pred             EecCCCc------eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeee
Confidence            9998753      334333   46899999999776 8999999999999864

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.88  E-value=1.1e-20  Score=169.93  Aligned_cols=255  Identities=20%  Similarity=0.286  Sum_probs=181.0

Q ss_pred             cccceEEEEEcCC-CCEEEEeeCCCcEEEEEeCCCCce----eeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510           10 HEDTVHDVAMDYY-GKRLATASSDYSIKIIGVGNNTSQ----HLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW   84 (288)
Q Consensus        10 h~~~v~~~~~s~~-g~~l~s~~~d~~i~lwd~~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw   84 (288)
                      -...|.+++|+|. .++|+.|.++|.|.+||+......    .......|..+++.+.|.....+.-|+|+|.||.|+.|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            3578999999984 688999999999999998654321    12334569999999999976555779999999999999


Q ss_pred             ecCCCCceEEeEEe---e------cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeee------EEeeccCC
Q 036510           85 KEGNSNEWIKDHVF---E------DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDT------SRIDQAHP  149 (288)
Q Consensus        85 d~~~~~~~~~~~~~---~------~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~------~~~~~~~~  149 (288)
                      +++.-........+   .      .-.-.+++++|.|.. ...++.|+.+|.|..-+ |.+..-..      ......|.
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~-p~~FiVGTe~G~v~~~~-r~g~~~~~~~~~~~~~~~~~h~  398 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD-PNHFIVGTEEGKVYKGC-RKGYTPAPEVSYKGHSTFITHI  398 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccCC-CceEEEEcCCcEEEEEe-ccCCcccccccccccccccccC
Confidence            87543211000000   0      112358899998875 45688899999886522 21211111      12345678


Q ss_pred             CCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEE
Q 036510          150 VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIA  229 (288)
Q Consensus       150 ~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~  229 (288)
                      +.|.++.++|...             ..+.+++ |.+++||......   ..+..+..+.++|.+++|||..   +..|+
T Consensus       399 g~v~~v~~nPF~~-------------k~fls~g-DW~vriWs~~~~~---~Pl~~~~~~~~~v~~vaWSptr---pavF~  458 (555)
T KOG1587|consen  399 GPVYAVSRNPFYP-------------KNFLSVG-DWTVRIWSEDVIA---SPLLSLDSSPDYVTDVAWSPTR---PAVFA  458 (555)
T ss_pred             cceEeeecCCCcc-------------ceeeeec-cceeEeccccCCC---CcchhhhhccceeeeeEEcCcC---ceEEE
Confidence            8999999999984             4455555 9999999976321   2334556788889999999985   67999


Q ss_pred             EEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          230 SASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       230 s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ++..||+|.+||+.........+. .-.....+.+.|++.|+.|++|+..|++++|++
T Consensus       459 ~~d~~G~l~iWDLl~~~~~Pv~s~-~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l  515 (555)
T KOG1587|consen  459 TVDGDGNLDIWDLLQDDEEPVLSQ-KVCSPALTRVRWSPNGKLLAVGDANGTTHILKL  515 (555)
T ss_pred             EEcCCCceehhhhhccccCCcccc-cccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence            999999999999986432111111 111345677899999999999999999999985

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.88  E-value=4.8e-21  Score=161.90  Aligned_cols=256  Identities=18%  Similarity=0.253  Sum_probs=182.1

Q ss_pred             cccccceEEEEEcCCC--CEEEEeeCCCcEEEEEeC--CCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510            8 TGHEDTVHDVAMDYYG--KRLATASSDYSIKIIGVG--NNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVII   83 (288)
Q Consensus         8 ~~h~~~v~~~~~s~~g--~~l~s~~~d~~i~lwd~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i   83 (288)
                      .-|.+.|++++|.|.-  +++++|..-|.|-+||+.  .+....+.-+..|.++|.++.|+|. +...+.+.|.||+|++
T Consensus       183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~-n~s~i~ssSyDGtiR~  261 (498)
T KOG4328|consen  183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPA-NTSQIYSSSYDGTIRL  261 (498)
T ss_pred             EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCC-ChhheeeeccCceeee
Confidence            3578899999999964  678999999999999994  2333457778899999999999874 4678999999999999


Q ss_pred             eecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCC
Q 036510           84 WKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAP  163 (288)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~  163 (288)
                      =|+.... ...+..+.........+.|+.+. .. ++.|..=|.+.+||.|.++..  .....-|...|++++++|..+ 
T Consensus       262 ~D~~~~i-~e~v~s~~~d~~~fs~~d~~~e~-~~-vl~~~~~G~f~~iD~R~~~s~--~~~~~lh~kKI~sv~~NP~~p-  335 (498)
T KOG4328|consen  262 QDFEGNI-SEEVLSLDTDNIWFSSLDFSAES-RS-VLFGDNVGNFNVIDLRTDGSE--YENLRLHKKKITSVALNPVCP-  335 (498)
T ss_pred             eeecchh-hHHHhhcCccceeeeeccccCCC-cc-EEEeecccceEEEEeecCCcc--chhhhhhhcccceeecCCCCc-
Confidence            9986532 11111111123345566776543 33 455555558999999986541  122334777899999999885 


Q ss_pred             CceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEee
Q 036510          164 GALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA  243 (288)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~  243 (288)
                                  .+|+|+|-|++.+|||++.-..+...+-....|+-.|.++.|||.+    ..|++.+.|.+|+|||..
T Consensus       336 ------------~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~----gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  336 ------------WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG----GTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             ------------hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC----CceEeeccCCceEEeecc
Confidence                        7899999999999999976211111112235689999999999985    349999999999999984


Q ss_pred             c--CCCcccceEeecc--ccCe--EEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          244 R--EGDQWEGKVLHDF--KTPV--YRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       244 ~--~~~~~~~~~~~~~--~~~i--~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      -  ........+.|..  ..++  .-+.|.||-.+|++|-.-+.|-|+|
T Consensus       400 ~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~  448 (498)
T KOG4328|consen  400 CISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD  448 (498)
T ss_pred             cccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence            1  1111122333322  2333  4579999999999998877787776

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=2.2e-22  Score=186.24  Aligned_cols=215  Identities=24%  Similarity=0.426  Sum_probs=167.2

Q ss_pred             ccccccceEEEEEcCCC-CEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            7 ETGHEDTVHDVAMDYYG-KRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      +..|++.|.++.|++.. +.||||+.||.|.|||+..........-..-.+.|.+++|++. ...+|+|++.+|.+.|||
T Consensus       112 ~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWD  190 (1049)
T KOG0307|consen  112 KSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWD  190 (1049)
T ss_pred             hcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchh-hhHHhhccCCCCCceecc
Confidence            44799999999999975 6999999999999999975321111101224678999999863 578999999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCC--cEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCC
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDG--NISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAP  163 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~  163 (288)
                      ++.....+.... ...+..+..+.|||+....++++...|+  .|.+||+|...  .+.+.+++|..+|.+++|++.+. 
T Consensus       191 lr~~~pii~ls~-~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--sP~k~~~~H~~GilslsWc~~D~-  266 (1049)
T KOG0307|consen  191 LRKKKPIIKLSD-TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--SPLKILEGHQRGILSLSWCPQDP-  266 (1049)
T ss_pred             ccCCCccccccc-CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--CchhhhcccccceeeeccCCCCc-
Confidence            987653332222 1222457789999998655544444444  78999998643  34566789999999999999874 


Q ss_pred             CceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEee
Q 036510          164 GALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA  243 (288)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~  243 (288)
                                  ++|+|++.|+.|.+|+..++    +.+..+-...+|+..|.|+|..   +..+++++.||.|.|+.+.
T Consensus       267 ------------~lllSsgkD~~ii~wN~~tg----Evl~~~p~~~nW~fdv~w~pr~---P~~~A~asfdgkI~I~sl~  327 (1049)
T KOG0307|consen  267 ------------RLLLSSGKDNRIICWNPNTG----EVLGELPAQGNWCFDVQWCPRN---PSVMAAASFDGKISIYSLQ  327 (1049)
T ss_pred             ------------hhhhcccCCCCeeEecCCCc----eEeeecCCCCcceeeeeecCCC---cchhhhheeccceeeeeee
Confidence                        78999999999999999987    5666776678899999999964   5789999999999999997


Q ss_pred             cC
Q 036510          244 RE  245 (288)
Q Consensus       244 ~~  245 (288)
                      ..
T Consensus       328 ~~  329 (1049)
T KOG0307|consen  328 GT  329 (1049)
T ss_pred             cC
Confidence            54

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.4e-20  Score=159.54  Aligned_cols=234  Identities=19%  Similarity=0.327  Sum_probs=169.9

Q ss_pred             CEEEEeeCC-CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCC
Q 036510           24 KRLATASSD-YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHK  102 (288)
Q Consensus        24 ~~l~s~~~d-~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~  102 (288)
                      .|++++... ..+.+|.+....  ...+.---.+.|.+++-++  .|.+|+.|...+.+++|.+.++.   +...+..|-
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~--~~~q~~v~Pg~v~al~s~n--~G~~l~ag~i~g~lYlWelssG~---LL~v~~aHY  123 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKD--QVVQYIVLPGPVHALASSN--LGYFLLAGTISGNLYLWELSSGI---LLNVLSAHY  123 (476)
T ss_pred             hheeeecccCccccccccCchh--hhhhhcccccceeeeecCC--CceEEEeecccCcEEEEEecccc---HHHHHHhhc
Confidence            456665543 457778774321  1111112356788888654  48888888899999999998876   445667899


Q ss_pred             CceeEEEeccCCCCeEEEEEeCCCcEEEEeecC------CCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCc
Q 036510          103 SSVNSIDWAPHELGLCLACGSSDGNISVFTARA------DGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQ  176 (288)
Q Consensus       103 ~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~------~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~  176 (288)
                      ..|+|+.|+-|  +.++++|+.||.|.+|++..      .....+......|+-+|+++.-.+-+.            ..
T Consensus       124 Q~ITcL~fs~d--gs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~------------~~  189 (476)
T KOG0646|consen  124 QSITCLKFSDD--GSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGT------------NA  189 (476)
T ss_pred             cceeEEEEeCC--CcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCc------------cc
Confidence            99999999976  67899999999999998742      111223455667888999987665432            15


Q ss_pred             eeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCc--------
Q 036510          177 KLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ--------  248 (288)
Q Consensus       177 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~--------  248 (288)
                      +|+|+|.|++||+||+..+.    ++.++ .....+.++...|-    +..+-.|+.+|.|.+.++......        
T Consensus       190 rl~TaS~D~t~k~wdlS~g~----LLlti-~fp~si~av~lDpa----e~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~  260 (476)
T KOG0646|consen  190 RLYTASEDRTIKLWDLSLGV----LLLTI-TFPSSIKAVALDPA----ERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKG  260 (476)
T ss_pred             eEEEecCCceEEEEEeccce----eeEEE-ecCCcceeEEEccc----ccEEEecCCcceEEeeehhcCCcccccccccc
Confidence            79999999999999998873    22222 24556899999996    367778999999999887643211        


Q ss_pred             -----ccceEeecccc--CeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          249 -----WEGKVLHDFKT--PVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       249 -----~~~~~~~~~~~--~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                           .....+.+|.+  .|++++.|-||+.|++|+.||+|+|||+
T Consensus       261 ~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi  306 (476)
T KOG0646|consen  261 RHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDI  306 (476)
T ss_pred             cccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence                 11122234544  8999999999999999999999999995

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.88  E-value=1.8e-20  Score=166.18  Aligned_cols=253  Identities=17%  Similarity=0.245  Sum_probs=185.1

Q ss_pred             EEEEcCCCCEEEEeeCCCcEEEEEeCCCC-ceeeEEEeccccCeEEEEecCCC---------CCCEEEEeeCCCcEEEee
Q 036510           16 DVAMDYYGKRLATASSDYSIKIIGVGNNT-SQHLAKLSGHKGAVWEVAWAHPK---------FGSILASCSFDGTVIIWK   85 (288)
Q Consensus        16 ~~~~s~~g~~l~s~~~d~~i~lwd~~~~~-~~~~~~~~~h~~~v~~~~~~~~~---------~~~~l~s~s~d~~v~iwd   85 (288)
                      .+.|++....|...=+|.++.+||+.... .-....+.-|..-||++.-.|-.         ....|++||.|++||+|+
T Consensus       329 A~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~  408 (1080)
T KOG1408|consen  329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWD  408 (1080)
T ss_pred             EEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEee
Confidence            34689888888888899999999996432 12244555688889988754410         135799999999999999


Q ss_pred             cCCCC--ceEEeE--------------------------------EeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEE
Q 036510           86 EGNSN--EWIKDH--------------------------------VFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVF  131 (288)
Q Consensus        86 ~~~~~--~~~~~~--------------------------------~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~  131 (288)
                      +....  ......                                .....+..+.+++++|+  +..||+|..-|+|++|
T Consensus       409 l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~--gqhLAsGDr~GnlrVy  486 (1080)
T KOG1408|consen  409 LAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD--GQHLASGDRGGNLRVY  486 (1080)
T ss_pred             cccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC--cceecccCccCceEEE
Confidence            85311  000000                                01124457899999998  7889999999999999


Q ss_pred             eecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcc
Q 036510          132 TARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDW  211 (288)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~  211 (288)
                      ++.+-   ......++|...|.|+.++-....           .++|++++.|+.|.++|+...   ..+++++.+|...
T Consensus       487 ~Lq~l---~~~~~~eAHesEilcLeyS~p~~~-----------~kLLASasrdRlIHV~Dv~rn---y~l~qtld~HSss  549 (1080)
T KOG1408|consen  487 DLQEL---EYTCFMEAHESEILCLEYSFPVLT-----------NKLLASASRDRLIHVYDVKRN---YDLVQTLDGHSSS  549 (1080)
T ss_pred             Eehhh---hhhhheecccceeEEEeecCchhh-----------hHhhhhccCCceEEEEecccc---cchhhhhcccccc
Confidence            99753   233456789999999999754311           167999999999999999653   2456678888888


Q ss_pred             eEEEEecCCCCC---------------------------------------------CCcEEEEEeCCCcEEEEEeecCC
Q 036510          212 VRDVAWAPNLGL---------------------------------------------PKSTIASASEDGKVIIWTVAREG  246 (288)
Q Consensus       212 V~~v~~sp~~~~---------------------------------------------~~~~l~s~s~D~~i~iw~~~~~~  246 (288)
                      |++|.|.-.+..                                             ..+++++++.|++|+||+++..+
T Consensus       550 ITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgK  629 (1080)
T KOG1408|consen  550 ITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGK  629 (1080)
T ss_pred             eeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccc
Confidence            888888764310                                             04679999999999999998764


Q ss_pred             CcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          247 DQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       247 ~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      +....+--+++.+....+...|.|-|+|+...|+++.++|.
T Consensus       630 q~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df  670 (1080)
T KOG1408|consen  630 QVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDF  670 (1080)
T ss_pred             eeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEe
Confidence            32111111344567788999999999999999999999994

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.1e-20  Score=153.44  Aligned_cols=213  Identities=18%  Similarity=0.283  Sum_probs=148.3

Q ss_pred             eEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCc--eEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC
Q 036510           48 LAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNE--WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD  125 (288)
Q Consensus        48 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d  125 (288)
                      +..|.+|.+.|++++|+.+  |.+|+|++.|++|+||++++...  ...++. ....+..+.+.|.||.. ..+++.-..
T Consensus        79 ~~~LKgH~~~vt~~~FsSd--GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~-s~vv~~~~g  154 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSD--GKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCK-SVVVSVKRG  154 (420)
T ss_pred             hhhhhccCCceeeeEEcCC--CceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcc-eEEEEEccC
Confidence            4567899999999999865  99999999999999999876321  111111 11223468899999864 345566677


Q ss_pred             CcEEEEeecC--CCC-------eeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCc
Q 036510          126 GNISVFTARA--DGG-------WDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGI  196 (288)
Q Consensus       126 ~~i~i~d~~~--~~~-------~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  196 (288)
                      ++|++|-+..  ++.       ++...+.+.|...+.++              +..+...++.|++.|..|.||+++ |+
T Consensus       155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~i--------------GiA~~~k~imsas~dt~i~lw~lk-Gq  219 (420)
T KOG2096|consen  155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINI--------------GIAGNAKYIMSASLDTKICLWDLK-GQ  219 (420)
T ss_pred             CEEEEEEeeecccCCCCcccccccccccchhcccceEEE--------------eecCCceEEEEecCCCcEEEEecC-Cc
Confidence            8999997642  221       11112333444444444              233345789999999999999998 42


Q ss_pred             eeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcc-----cceEeeccccCeEEEEeecCCC
Q 036510          197 WKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQW-----EGKVLHDFKTPVYRVSWSLTGN  271 (288)
Q Consensus       197 ~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~-----~~~~~~~~~~~i~~~~~spdg~  271 (288)
                          .+..+......-...+.||++    .+|++++.---+++|.+=-.++..     ..-.+++|++.|.+++|||+.+
T Consensus       220 ----~L~~idtnq~~n~~aavSP~G----RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~  291 (420)
T KOG2096|consen  220 ----LLQSIDTNQSSNYDAAVSPDG----RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST  291 (420)
T ss_pred             ----eeeeeccccccccceeeCCCC----cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc
Confidence                233333333333456888984    789999998899999875332211     1123478889999999999999


Q ss_pred             EEEEEeCCCcEEEeEc
Q 036510          272 ILAVADGNNNVTLWEE  287 (288)
Q Consensus       272 ~l~s~~~d~~v~~w~~  287 (288)
                      ++++.|.||+.||||+
T Consensus       292 r~vtvSkDG~wriwdt  307 (420)
T KOG2096|consen  292 RAVTVSKDGKWRIWDT  307 (420)
T ss_pred             eeEEEecCCcEEEeec
Confidence            9999999999999995

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.87  E-value=5.6e-19  Score=150.41  Aligned_cols=235  Identities=14%  Similarity=0.119  Sum_probs=153.7

Q ss_pred             ceEEEEEcCCCCEE-EEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEE-EEeeCCCcEEEeecCCCC
Q 036510           13 TVHDVAMDYYGKRL-ATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSIL-ASCSFDGTVIIWKEGNSN   90 (288)
Q Consensus        13 ~v~~~~~s~~g~~l-~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~d~~v~iwd~~~~~   90 (288)
                      .+.++.|+|+|+.+ ++++.++.+++||....  +.+..+..+.. +..++|+++  ++.+ ++++.|+.+++||+.+..
T Consensus        32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~--~~~~~~~~~~~-~~~~~~~~~--g~~l~~~~~~~~~l~~~d~~~~~  106 (300)
T TIGR03866        32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATG--EVIGTLPSGPD-PELFALHPN--GKILYIANEDDNLVTVIDIETRK  106 (300)
T ss_pred             CCCceEECCCCCEEEEEECCCCeEEEEECCCC--cEEEeccCCCC-ccEEEECCC--CCEEEEEcCCCCeEEEEECCCCe
Confidence            35679999999876 56778899999998543  44555554443 467888764  5555 566779999999997643


Q ss_pred             ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCC-cEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecc
Q 036510           91 EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDG-NISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS  169 (288)
Q Consensus        91 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~  169 (288)
                         ....+. +...+.+++|+|+  +.+++++..++ .+.+||.+......  ...  .......+.|+|++        
T Consensus       107 ---~~~~~~-~~~~~~~~~~~~d--g~~l~~~~~~~~~~~~~d~~~~~~~~--~~~--~~~~~~~~~~s~dg--------  168 (300)
T TIGR03866       107 ---VLAEIP-VGVEPEGMAVSPD--GKIVVNTSETTNMAHFIDTKTYEIVD--NVL--VDQRPRFAEFTADG--------  168 (300)
T ss_pred             ---EEeEee-CCCCcceEEECCC--CCEEEEEecCCCeEEEEeCCCCeEEE--EEE--cCCCccEEEECCCC--------
Confidence               223333 2234688999998  55667676654 46677876542211  111  12235678899887        


Q ss_pred             cccCCCcee-EEeecCCcEEEEEEeCCceeeeeeecccc-----CCc--ceEEEEecCCCCCCCcE-EEEEeCCCcEEEE
Q 036510          170 GFLDPVQKL-CSGGCDNTVKVWKLYNGIWKMDCFPALQM-----HTD--WVRDVAWAPNLGLPKST-IASASEDGKVIIW  240 (288)
Q Consensus       170 ~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-----h~~--~V~~v~~sp~~~~~~~~-l~s~s~D~~i~iw  240 (288)
                            +.| +++..++.|++||+.++.    ++..+..     +..  ....+.|+|++    ++ +++.+.++.+.+|
T Consensus       169 ------~~l~~~~~~~~~v~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~s~dg----~~~~~~~~~~~~i~v~  234 (300)
T TIGR03866       169 ------KELWVSSEIGGTVSVIDVATRK----VIKKITFEIPGVHPEAVQPVGIKLTKDG----KTAFVALGPANRVAVV  234 (300)
T ss_pred             ------CEEEEEcCCCCEEEEEEcCcce----eeeeeeecccccccccCCccceEECCCC----CEEEEEcCCCCeEEEE
Confidence                  445 566678999999998763    2222111     111  23467899985    34 4555667789999


Q ss_pred             EeecCCCcccceEeeccccCeEEEEeecCCCEEEEEe-CCCcEEEeEcC
Q 036510          241 TVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVAD-GNNNVTLWEEA  288 (288)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~-~d~~v~~w~~~  288 (288)
                      |.+..+ . . ..+ .+...+.+++|+|+|++|++++ .+++|++||.+
T Consensus       235 d~~~~~-~-~-~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~  279 (300)
T TIGR03866       235 DAKTYE-V-L-DYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVA  279 (300)
T ss_pred             ECCCCc-E-E-EEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence            986421 1 1 111 2345788999999999998875 58999999953

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.87  E-value=1.6e-20  Score=153.03  Aligned_cols=263  Identities=18%  Similarity=0.232  Sum_probs=180.8

Q ss_pred             ccccceEEEEEcCC----CCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510            9 GHEDTVHDVAMDYY----GKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW   84 (288)
Q Consensus         9 ~h~~~v~~~~~s~~----g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw   84 (288)
                      .|+..-+.++|+-+    ..+||.||.-|.|++.|+..  .++...+.+|..+|+.|.|-| ...++++|+|.|.+||+|
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~--~~~~~~~~ghG~sINeik~~p-~~~qlvls~SkD~svRlw  163 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS--GQCSKNYRGHGGSINEIKFHP-DRPQLVLSASKDHSVRLW  163 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch--hhhccceeccCccchhhhcCC-CCCcEEEEecCCceEEEE
Confidence            47777777777643    46899999999999999853  467888999999999999954 467899999999999999


Q ss_pred             ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510           85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG  164 (288)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~  164 (288)
                      ++++..+.....-+.+|++.|.+++|+++  +.++++++.|-+|++|++...+-....         -.++.|+|+....
T Consensus       164 nI~~~~Cv~VfGG~egHrdeVLSvD~~~~--gd~i~ScGmDhslk~W~l~~~~f~~~l---------E~s~~~~~~~t~~  232 (385)
T KOG1034|consen  164 NIQTDVCVAVFGGVEGHRDEVLSVDFSLD--GDRIASCGMDHSLKLWRLNVKEFKNKL---------ELSITYSPNKTTR  232 (385)
T ss_pred             eccCCeEEEEecccccccCcEEEEEEcCC--CCeeeccCCcceEEEEecChhHHhhhh---------hhhcccCCCCccC
Confidence            99876643333335679999999999998  668999999999999998732211100         0112233322111


Q ss_pred             cee-----------cccccC-------CCceeEEeecCCcEEEEEEe---CC-------ceeeeeeeccccCCcceEEEE
Q 036510          165 ALV-----------GSGFLD-------PVQKLCSGGCDNTVKVWKLY---NG-------IWKMDCFPALQMHTDWVRDVA  216 (288)
Q Consensus       165 ~~~-----------~~~~~~-------~~~~l~s~~~d~~i~iwd~~---~~-------~~~~~~~~~~~~h~~~V~~v~  216 (288)
                      ...           .....+       -+.+++|-|.++.|..|..-   +.       ...-+.+..+.-....|+-+.
T Consensus       233 pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfir  312 (385)
T KOG1034|consen  233 PFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIR  312 (385)
T ss_pred             cCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEE
Confidence            100           000000       13678899999999999761   11       000111222232333466777


Q ss_pred             ecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeecc-ccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          217 WAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDF-KTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       217 ~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~-~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      |+-|-  ..++||.|..-|.|.+||++.......-++.+.- ++.|...+||-||..|+....|++|.=||.
T Consensus       313 f~~d~--~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  313 FAFDP--WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             EeecH--HHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence            76653  2478999999999999999865432222222222 356888999999999999999999999984

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.87  E-value=9.4e-20  Score=163.91  Aligned_cols=249  Identities=17%  Similarity=0.294  Sum_probs=166.3

Q ss_pred             ccc-cceEEEEEcCCCCE-EEEeeCCCcEEEEEeCCCCceee-EEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            9 GHE-DTVHDVAMDYYGKR-LATASSDYSIKIIGVGNNTSQHL-AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         9 ~h~-~~v~~~~~s~~g~~-l~s~~~d~~i~lwd~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      -|. +.|+.++|..||+. |++|+..|.+.+||++..  +.. .....|.++|....|-+.  ..++++.+.|++.++|-
T Consensus       241 k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k--kl~~v~~nah~~sv~~~~fl~~--epVl~ta~~DnSlk~~v  316 (910)
T KOG1539|consen  241 KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK--KLINVTRNAHYGSVTGATFLPG--EPVLVTAGADNSLKVWV  316 (910)
T ss_pred             EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCC--eeeeeeeccccCCcccceecCC--CceEeeccCCCceeEEE
Confidence            464 89999999999955 666777799999999753  333 344589999999998753  57999999999999995


Q ss_pred             cCCCC-ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEee-------------------------------
Q 036510           86 EGNSN-EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTA-------------------------------  133 (288)
Q Consensus        86 ~~~~~-~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~-------------------------------  133 (288)
                      ..++. .....+...+|..|-.|++|.... +..+.+.+.|++++.+++                               
T Consensus       317 fD~~dg~pR~LR~R~GHs~Pp~~irfy~~~-g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~  395 (910)
T KOG1539|consen  317 FDSGDGVPRLLRSRGGHSAPPSCIRFYGSQ-GHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKL  395 (910)
T ss_pred             eeCCCCcchheeeccCCCCCchheeeeccC-cEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcC
Confidence            43221 112233345666666666665322 444445555555544433                               


Q ss_pred             --------------------------------------------------------------------------------
Q 036510          134 --------------------------------------------------------------------------------  133 (288)
Q Consensus       134 --------------------------------------------------------------------------------  133 (288)
                                                                                                      
T Consensus       396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~f  475 (910)
T KOG1539|consen  396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRF  475 (910)
T ss_pred             CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEE
Confidence                                                                                            


Q ss_pred             --cCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCce--------------
Q 036510          134 --RADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIW--------------  197 (288)
Q Consensus       134 --~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--------------  197 (288)
                        +.+-....+.....|..+|+.++-.-              -.+.++|++.+|-++.||..+...              
T Consensus       476 NmQSGi~r~sf~~~~ah~~~V~gla~D~--------------~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv  541 (910)
T KOG1539|consen  476 NMQSGIHRKSFGDSPAHKGEVTGLAVDG--------------TNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIV  541 (910)
T ss_pred             EcccCeeecccccCccccCceeEEEecC--------------CCceEEEccCcceEEEEecCCcceeeeeccCCCcceee
Confidence              11100000000112222222222211              125689999999999999754320              


Q ss_pred             -----------------------eeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEe
Q 036510          198 -----------------------KMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVL  254 (288)
Q Consensus       198 -----------------------~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~  254 (288)
                                             .++.+..+.||.+.|++++||||+    +.|++++.|++||+||+-..      ..+
T Consensus       542 ~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dg----rWlisasmD~tIr~wDlpt~------~lI  611 (910)
T KOG1539|consen  542 YHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDG----RWLISASMDSTIRTWDLPTG------TLI  611 (910)
T ss_pred             eeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCC----cEEEEeecCCcEEEEeccCc------cee
Confidence                                   012344578999999999999985    78999999999999998643      333


Q ss_pred             ec--cccCeEEEEeecCCCEEEEEeCC-CcEEEeE
Q 036510          255 HD--FKTPVYRVSWSLTGNILAVADGN-NNVTLWE  286 (288)
Q Consensus       255 ~~--~~~~i~~~~~spdg~~l~s~~~d-~~v~~w~  286 (288)
                      ..  ...+++++.|||+|.+||++..| .-|.+|-
T Consensus       612 D~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  612 DGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             eeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence            33  35789999999999999999998 6799995

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.87  E-value=1.5e-19  Score=159.44  Aligned_cols=242  Identities=20%  Similarity=0.252  Sum_probs=173.2

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCce
Q 036510           13 TVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEW   92 (288)
Q Consensus        13 ~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~   92 (288)
                      -|+.++|.|||+.|+-+.. ..+.+||.+.  +..+.++.||++.|++++|+++  |+.|+||+.|+.|.+|.....+. 
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~nd--G~llqtLKgHKDtVycVAys~d--GkrFASG~aDK~VI~W~~klEG~-   87 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSD--GTLLQPLKGHKDTVYCVAYAKD--GKRFASGSADKSVIIWTSKLEGI-   87 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCC--cccccccccccceEEEEEEccC--CceeccCCCceeEEEecccccce-
Confidence            7889999999988776554 4678899854  4679999999999999999976  99999999999999997654331 


Q ss_pred             EEeEEeecCCCceeEEEeccC-------------------------------------CCCeEEEEEeCCCcEEEEeecC
Q 036510           93 IKDHVFEDHKSSVNSIDWAPH-------------------------------------ELGLCLACGSSDGNISVFTARA  135 (288)
Q Consensus        93 ~~~~~~~~h~~~v~~l~~~p~-------------------------------------~~~~~l~sg~~d~~i~i~d~~~  135 (288)
                        .  ...|.+.|.|+.|+|-                                     ++|.+++.|-.+|+|.|-+-..
T Consensus        88 --L--kYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g  163 (1081)
T KOG1538|consen   88 --L--KYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG  163 (1081)
T ss_pred             --e--eeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCC
Confidence              1  1246667777766661                                     1257788888888887753221


Q ss_pred             CCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEE
Q 036510          136 DGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDV  215 (288)
Q Consensus       136 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v  215 (288)
                       ..-.......+.+.+|.+|.|+|....|..         ..++...+..++.++.+...+-  .--..+. ..  =.|+
T Consensus       164 -Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~---------di~aV~DW~qTLSFy~LsG~~I--gk~r~L~-Fd--P~Ci  228 (1081)
T KOG1538|consen  164 -EEKVKIERPGGSNSPIWSICWNPSSGEGRN---------DILAVADWGQTLSFYQLSGKQI--GKDRALN-FD--PCCI  228 (1081)
T ss_pred             -CcceEEeCCCCCCCCceEEEecCCCCCCcc---------ceEEEEeccceeEEEEecceee--cccccCC-CC--chhh
Confidence             111111222356778999999998765442         4577788888888888754210  0011111 11  2578


Q ss_pred             EecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          216 AWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       216 ~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ++.|++    .+++.|+.|+.+++|.-.   +. ...++.++..+|+.++..|+++..+.|+-||||-.|++
T Consensus       229 sYf~NG----Ey~LiGGsdk~L~~fTR~---Gv-rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  229 SYFTNG----EYILLGGSDKQLSLFTRD---GV-RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             eeccCC----cEEEEccCCCceEEEeec---Ce-EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence            888884    689999999999999633   11 22334556789999999999999999999999987764

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.86  E-value=1e-19  Score=158.48  Aligned_cols=264  Identities=21%  Similarity=0.265  Sum_probs=179.6

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      ++.||++.|.+|+..|.|.+|+||+.||++|+|.+..  +.++.+..- .+.|.+++|++..+-.+|| ++.+..+-|-+
T Consensus       395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~T--gRcvr~~~~-d~~I~~vaw~P~~~~~vLA-vA~~~~~~ivn  470 (733)
T KOG0650|consen  395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIAT--GRCVRTVQF-DSEIRSVAWNPLSDLCVLA-VAVGECVLIVN  470 (733)
T ss_pred             eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeec--ceEEEEEee-cceeEEEEecCCCCceeEE-EEecCceEEeC
Confidence            4569999999999999999999999999999999954  466666542 4579999999765433444 33333344433


Q ss_pred             cCCCC-------------------------ceE---------EeEEeecCCCceeEEEeccCCCCeEEEEEeCC---CcE
Q 036510           86 EGNSN-------------------------EWI---------KDHVFEDHKSSVNSIDWAPHELGLCLACGSSD---GNI  128 (288)
Q Consensus        86 ~~~~~-------------------------~~~---------~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d---~~i  128 (288)
                      ..-+.                         .|.         -+++.-.|..+|..+.||..  |.+|++...+   ..|
T Consensus       471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk--GDYlatV~~~~~~~~V  548 (733)
T KOG0650|consen  471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK--GDYLATVMPDSGNKSV  548 (733)
T ss_pred             ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC--CceEEEeccCCCcceE
Confidence            21000                         010         01122247789999999987  6777776443   467


Q ss_pred             EEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceec---------------------------ccccCCCceeEEe
Q 036510          129 SVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG---------------------------SGFLDPVQKLCSG  181 (288)
Q Consensus       129 ~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~---------------------------~~~~~~~~~l~s~  181 (288)
                      .|+++.......+++.   -.+.+.++.|.|..+..++..                           +...+.+..|+.|
T Consensus       549 liHQLSK~~sQ~PF~k---skG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~g  625 (733)
T KOG0650|consen  549 LIHQLSKRKSQSPFRK---SKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILG  625 (733)
T ss_pred             EEEecccccccCchhh---cCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEe
Confidence            7888765432222222   223467778887764322110                           1112446678889


Q ss_pred             ecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCc------ccceEee
Q 036510          182 GCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ------WEGKVLH  255 (288)
Q Consensus       182 ~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~------~~~~~~~  255 (288)
                      +.|+.++.+|+.-+.   +..+.+.-|...|++|+|++..    -++++|+.|+++.|+.-.--.+.      ...+.+.
T Consensus       626 s~d~k~~WfDldlss---kPyk~lr~H~~avr~Va~H~ry----PLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~  698 (733)
T KOG0650|consen  626 SYDKKMCWFDLDLSS---KPYKTLRLHEKAVRSVAFHKRY----PLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLR  698 (733)
T ss_pred             cCCCeeEEEEcccCc---chhHHhhhhhhhhhhhhhcccc----ceeeeecCCCcEEEEeeeeehhhhcCCceEeeeecc
Confidence            999999999986432   4567788899999999999964    47999999999999865432211      1112234


Q ss_pred             cccc----CeEEEEeecCCCEEEEEeCCCcEEEe
Q 036510          256 DFKT----PVYRVSWSLTGNILAVADGNNNVTLW  285 (288)
Q Consensus       256 ~~~~----~i~~~~~spdg~~l~s~~~d~~v~~w  285 (288)
                      +|..    .|..+.|||....|.++++||+|+||
T Consensus       699 gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  699 GHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             CceeecccceEeecccCCCceEEecCCCceEEee
Confidence            4543    38899999999999999999999998

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=4.4e-20  Score=149.67  Aligned_cols=203  Identities=18%  Similarity=0.267  Sum_probs=151.9

Q ss_pred             ccccccceEEEEEcCCCC--EEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510            7 ETGHEDTVHDVAMDYYGK--RLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW   84 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~--~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw   84 (288)
                      +..|.+.|++++|.+.-.  .|+||+.||.|.+|++  +...++.++.+|++.|+.++..|  .+.+-++.+.|+.+++|
T Consensus        79 ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~--~~W~~~~slK~H~~~Vt~lsiHP--S~KLALsVg~D~~lr~W  154 (362)
T KOG0294|consen   79 LLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV--GSWELLKSLKAHKGQVTDLSIHP--SGKLALSVGGDQVLRTW  154 (362)
T ss_pred             eeccccceEEEEecCCcchhheeeecCCCcEEEEEc--CCeEEeeeecccccccceeEecC--CCceEEEEcCCceeeee
Confidence            346999999999998654  8999999999999998  45789999999999999999854  37888999999999999


Q ss_pred             ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510           85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG  164 (288)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~  164 (288)
                      ++-.+..-.. ..+   .....-+.|+|.  +.+++.++. +.|-+|.+....-+..    -..+..+.++.|-.     
T Consensus       155 NLV~Gr~a~v-~~L---~~~at~v~w~~~--Gd~F~v~~~-~~i~i~q~d~A~v~~~----i~~~~r~l~~~~l~-----  218 (362)
T KOG0294|consen  155 NLVRGRVAFV-LNL---KNKATLVSWSPQ--GDHFVVSGR-NKIDIYQLDNASVFRE----IENPKRILCATFLD-----  218 (362)
T ss_pred             hhhcCcccee-ecc---CCcceeeEEcCC--CCEEEEEec-cEEEEEecccHhHhhh----hhccccceeeeecC-----
Confidence            9876542211 112   223455999987  555665655 4578887754321110    11223455665543     


Q ss_pred             ceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510          165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR  244 (288)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~  244 (288)
                                +..|.+|+.|+.|++||....    .+...+.+|..+|.++.+-.+-  ...+|+|+|+||.|++||++.
T Consensus       219 ----------~~~L~vG~d~~~i~~~D~ds~----~~~~~~~AH~~RVK~i~~~~~~--~~~~lvTaSSDG~I~vWd~~~  282 (362)
T KOG0294|consen  219 ----------GSELLVGGDNEWISLKDTDSD----TPLTEFLAHENRVKDIASYTNP--EHEYLVTASSDGFIKVWDIDM  282 (362)
T ss_pred             ----------CceEEEecCCceEEEeccCCC----ccceeeecchhheeeeEEEecC--CceEEEEeccCceEEEEEccc
Confidence                      267999999999999998764    4667889999999999854431  146999999999999999986


Q ss_pred             C
Q 036510          245 E  245 (288)
Q Consensus       245 ~  245 (288)
                      .
T Consensus       283 ~  283 (362)
T KOG0294|consen  283 E  283 (362)
T ss_pred             c
Confidence            4

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.86  E-value=2.7e-20  Score=157.46  Aligned_cols=218  Identities=16%  Similarity=0.204  Sum_probs=155.8

Q ss_pred             eEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC-CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCC
Q 036510           48 LAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS-NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDG  126 (288)
Q Consensus        48 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~  126 (288)
                      ...+.-|...|.+++|.|...-.+++.|+.-|+|-+||++.. ........+..|..+|.++.|+|.+.. .+.+.+.||
T Consensus       179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s-~i~ssSyDG  257 (498)
T KOG4328|consen  179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTS-QIYSSSYDG  257 (498)
T ss_pred             cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChh-heeeeccCc
Confidence            344556889999999965433378899999999999999532 222234456789999999999998644 477889999


Q ss_pred             cEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccc
Q 036510          127 NISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQ  206 (288)
Q Consensus       127 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  206 (288)
                      +|++-|+.... ...+.....-...+.+++|+.+.              ..++.+..=|...+||.+.+.   .....+.
T Consensus       258 tiR~~D~~~~i-~e~v~s~~~d~~~fs~~d~~~e~--------------~~vl~~~~~G~f~~iD~R~~~---s~~~~~~  319 (498)
T KOG4328|consen  258 TIRLQDFEGNI-SEEVLSLDTDNIWFSSLDFSAES--------------RSVLFGDNVGNFNVIDLRTDG---SEYENLR  319 (498)
T ss_pred             eeeeeeecchh-hHHHhhcCccceeeeeccccCCC--------------ccEEEeecccceEEEEeecCC---ccchhhh
Confidence            99999986531 11111111111223444444433              445555555589999999863   2244567


Q ss_pred             cCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCccc-ceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEe
Q 036510          207 MHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWE-GKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLW  285 (288)
Q Consensus       207 ~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~-~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w  285 (288)
                      .|...|++|+++|..   +.+|||+|.|++.+|||++....+.+ ....-.|...|.++.|||+|-.|++.+.|..||||
T Consensus       320 lh~kKI~sv~~NP~~---p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~  396 (498)
T KOG4328|consen  320 LHKKKITSVALNPVC---PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVF  396 (498)
T ss_pred             hhhcccceeecCCCC---chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEe
Confidence            788899999999974   67899999999999999986533221 11123567789999999998889999999999999


Q ss_pred             Ec
Q 036510          286 EE  287 (288)
Q Consensus       286 ~~  287 (288)
                      |-
T Consensus       397 ds  398 (498)
T KOG4328|consen  397 DS  398 (498)
T ss_pred             ec
Confidence            84

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.86  E-value=2.7e-20  Score=159.01  Aligned_cols=243  Identities=19%  Similarity=0.268  Sum_probs=178.0

Q ss_pred             cceEEEEEcCCCCE-EEEeeCCCcEEEEEeCCCC--ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCC
Q 036510           12 DTVHDVAMDYYGKR-LATASSDYSIKIIGVGNNT--SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN   88 (288)
Q Consensus        12 ~~v~~~~~s~~g~~-l~s~~~d~~i~lwd~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~   88 (288)
                      -.+.+++|+....+ +++.+.|+.+++|.-.++.  .+.+..+.+....  |++-..  ...++++|+..+.|+|||++.
T Consensus        35 pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~--Cv~~~s--~S~y~~sgG~~~~Vkiwdl~~  110 (673)
T KOG4378|consen   35 PGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAF--CVACAS--QSLYEISGGQSGCVKIWDLRA  110 (673)
T ss_pred             CcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHH--HHhhhh--cceeeeccCcCceeeehhhHH
Confidence            45888899876643 3445678999999765432  3344445444332  222211  247999999999999999974


Q ss_pred             CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceec
Q 036510           89 SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG  168 (288)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~  168 (288)
                      ..   ..+.++.|...|+++.++-.  .-++|+++..|-|.|..+.++....++..  +....|.-+.|+|...      
T Consensus       111 kl---~hr~lkdh~stvt~v~YN~~--DeyiAsvs~gGdiiih~~~t~~~tt~f~~--~sgqsvRll~ys~skr------  177 (673)
T KOG4378|consen  111 KL---IHRFLKDHQSTVTYVDYNNT--DEYIASVSDGGDIIIHGTKTKQKTTTFTI--DSGQSVRLLRYSPSKR------  177 (673)
T ss_pred             HH---HhhhccCCcceeEEEEecCC--cceeEEeccCCcEEEEecccCccccceec--CCCCeEEEeecccccc------
Confidence            33   23457889999999999754  45799999999999998877644333221  2223456788888763      


Q ss_pred             ccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCc
Q 036510          169 SGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ  248 (288)
Q Consensus       169 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~  248 (288)
                             .+|.+++.+|.|.+||+....   ...+-...|..+...|+|+|..   +.+||+.+.|+.|.+||+....  
T Consensus       178 -------~lL~~asd~G~VtlwDv~g~s---p~~~~~~~HsAP~~gicfspsn---e~l~vsVG~Dkki~~yD~~s~~--  242 (673)
T KOG4378|consen  178 -------FLLSIASDKGAVTLWDVQGMS---PIFHASEAHSAPCRGICFSPSN---EALLVSVGYDKKINIYDIRSQA--  242 (673)
T ss_pred             -------eeeEeeccCCeEEEEeccCCC---cccchhhhccCCcCcceecCCc---cceEEEecccceEEEeeccccc--
Confidence                   578899999999999986521   2233457899999999999974   5789999999999999998542  


Q ss_pred             ccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEcC
Q 036510          249 WEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA  288 (288)
Q Consensus       249 ~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~~  288 (288)
                      ....+.  +..|...++|+|+|.+|+.|...|.|..||++
T Consensus       243 s~~~l~--y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R  280 (673)
T KOG4378|consen  243 STDRLT--YSHPLSTVAFSECGTYLCAGNSKGELIAYDMR  280 (673)
T ss_pred             ccceee--ecCCcceeeecCCceEEEeecCCceEEEEecc
Confidence            122332  34688999999999999999999999999974

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=7.4e-20  Score=148.46  Aligned_cols=242  Identities=14%  Similarity=0.228  Sum_probs=164.9

Q ss_pred             eEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceE
Q 036510           14 VHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWI   93 (288)
Q Consensus        14 v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~   93 (288)
                      ..++.|++-|.+||+|+.||.|-|||....  ..-+.+.+|..+|.+++||++  |+.|+|+|.|..+++||+..+..  
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~--~iar~lsaH~~pi~sl~WS~d--gr~LltsS~D~si~lwDl~~gs~--   99 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF--RIARMLSAHVRPITSLCWSRD--GRKLLTSSRDWSIKLWDLLKGSP--   99 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEcccc--chhhhhhccccceeEEEecCC--CCEeeeecCCceeEEEeccCCCc--
Confidence            567899999999999999999999998543  345668999999999999976  99999999999999999988763  


Q ss_pred             EeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeecc-CCCCeeEEEeCCCCCCCceeccccc
Q 036510           94 KDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQA-HPVGVTSVSWAPSTAPGALVGSGFL  172 (288)
Q Consensus        94 ~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~v~~i~~~p~~~~~~~~~~~~~  172 (288)
                       .+.+ ....+|+.+.|||...+..+++--... -.+-++..+.+.....-..+ -+..-.+..|.+.            
T Consensus       100 -l~ri-rf~spv~~~q~hp~k~n~~va~~~~~s-p~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~------------  164 (405)
T KOG1273|consen  100 -LKRI-RFDSPVWGAQWHPRKRNKCVATIMEES-PVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRR------------  164 (405)
T ss_pred             -eeEE-EccCccceeeeccccCCeEEEEEecCC-cEEEEecCCceeeccCCCccccccccccccccCC------------
Confidence             2222 246799999999986555555432221 22222221110000000000 0000111123332            


Q ss_pred             CCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCC-cceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCc---
Q 036510          173 DPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHT-DWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ---  248 (288)
Q Consensus       173 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~-~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~---  248 (288)
                        ++++++|...|.+.++|..+-    +++..++.-. ..|..+.|+..    +..|+.-+.|+.||.|+++.....   
T Consensus       165 --g~yIitGtsKGkllv~~a~t~----e~vas~rits~~~IK~I~~s~~----g~~liiNtsDRvIR~ye~~di~~~~r~  234 (405)
T KOG1273|consen  165 --GKYIITGTSKGKLLVYDAETL----ECVASFRITSVQAIKQIIVSRK----GRFLIINTSDRVIRTYEISDIDDEGRD  234 (405)
T ss_pred             --CCEEEEecCcceEEEEecchh----eeeeeeeechheeeeEEEEecc----CcEEEEecCCceEEEEehhhhcccCcc
Confidence              478999999999999998763    6777665444 66888898876    468999999999999998843211   


Q ss_pred             ccceEeeccccCe-----EEEEeecCCCEEEEEeC-CCcEEEeE
Q 036510          249 WEGKVLHDFKTPV-----YRVSWSLTGNILAVADG-NNNVTLWE  286 (288)
Q Consensus       249 ~~~~~~~~~~~~i-----~~~~~spdg~~l~s~~~-d~~v~~w~  286 (288)
                      .+.++.+++...|     ..++||.||.++..|+. --.++||.
T Consensus       235 ~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE  278 (405)
T KOG1273|consen  235 GEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWE  278 (405)
T ss_pred             CCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEe
Confidence            1223334443333     57899999999887764 34688886

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.86  E-value=1.3e-19  Score=145.49  Aligned_cols=254  Identities=18%  Similarity=0.265  Sum_probs=179.9

Q ss_pred             cccccceEEEEEcCCC--C--EEEEeeCCCcEEEEEeCCC--CceeeEEE-----eccccCeEEEEecCCCCCCEEEEee
Q 036510            8 TGHEDTVHDVAMDYYG--K--RLATASSDYSIKIIGVGNN--TSQHLAKL-----SGHKGAVWEVAWAHPKFGSILASCS   76 (288)
Q Consensus         8 ~~h~~~v~~~~~s~~g--~--~l~s~~~d~~i~lwd~~~~--~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~l~s~s   76 (288)
                      +.|.-+++.+.|.|+.  .  .|++.+.| .+|||.+..+  ..++...+     ..|..++++..|.. .+.+++.++|
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne-~dp~~igtSS  170 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSSD-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNE-VDPNLIGTSS  170 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhcccC-eEEEEeccCcCCceehhhhhccCcccccCCccccccccc-CCcceeEeec
Confidence            4788899999999874  2  24434444 7899988532  11211112     34667899999974 3678999999


Q ss_pred             CCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccC--CCCeeE
Q 036510           77 FDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAH--PVGVTS  154 (288)
Q Consensus        77 ~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~--~~~v~~  154 (288)
                      .|-+..|||+..+-.......+-.|.++|..++|.... ..++|+.+.||.+|+||+|.-.+  ...+++.-  ..+..+
T Consensus       171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s-~~~FASvgaDGSvRmFDLR~leH--STIIYE~p~~~~pLlR  247 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGS-RDVFASVGADGSVRMFDLRSLEH--STIIYEDPSPSTPLLR  247 (364)
T ss_pred             ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCc-cceEEEecCCCcEEEEEeccccc--ceEEecCCCCCCccee
Confidence            99999999998752211223456799999999999853 56799999999999999997543  12233321  345778


Q ss_pred             EEeCCCCCCCceecccccCCCceeEEeecCC-cEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeC
Q 036510          155 VSWAPSTAPGALVGSGFLDPVQKLCSGGCDN-TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE  233 (288)
Q Consensus       155 i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~  233 (288)
                      ++|++..+             ++++|-..|. .|.|.|++...   ..+..+++|...|+.++|.|.+   .+.|+|+++
T Consensus       248 LswnkqDp-------------nymATf~~dS~~V~iLDiR~P~---tpva~L~~H~a~VNgIaWaPhS---~~hictaGD  308 (364)
T KOG0290|consen  248 LSWNKQDP-------------NYMATFAMDSNKVVILDIRVPC---TPVARLRNHQASVNGIAWAPHS---SSHICTAGD  308 (364)
T ss_pred             eccCcCCc-------------hHHhhhhcCCceEEEEEecCCC---cceehhhcCcccccceEecCCC---CceeeecCC
Confidence            99998875             6677665555 48899998753   3466789999999999999986   578999999


Q ss_pred             CCcEEEEEeecCCCcc--cceEeeccccCeEEEEeecC-CCEEEEEeCCCcEEEeE
Q 036510          234 DGKVIIWTVAREGDQW--EGKVLHDFKTPVYRVSWSLT-GNILAVADGNNNVTLWE  286 (288)
Q Consensus       234 D~~i~iw~~~~~~~~~--~~~~~~~~~~~i~~~~~spd-g~~l~s~~~d~~v~~w~  286 (288)
                      |-.+-|||+.......  .-.+....+..|+-+.|+|. +..|+.+ .++++.+.+
T Consensus       309 D~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~-~~kkleiLR  363 (364)
T KOG0290|consen  309 DCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAIC-FGKKLEILR  363 (364)
T ss_pred             cceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEE-ecCeeeEEe
Confidence            9999999998653210  11112233467999999975 5677766 446665543

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.86  E-value=4.4e-20  Score=150.45  Aligned_cols=258  Identities=18%  Similarity=0.350  Sum_probs=189.9

Q ss_pred             cccccccceEEEEEcC----CCCEEEEeeCCCcEEEEEeCCCCc-eeeEEEe--ccccCeEEEEecCCCC--CCEEEEee
Q 036510            6 IETGHEDTVHDVAMDY----YGKRLATASSDYSIKIIGVGNNTS-QHLAKLS--GHKGAVWEVAWAHPKF--GSILASCS   76 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~----~g~~l~s~~~d~~i~lwd~~~~~~-~~~~~~~--~h~~~v~~~~~~~~~~--~~~l~s~s   76 (288)
                      +..+|..++++++|++    +...+++......+.+|+.....+ +.++++.  .|....+.++|+-+..  ..++|.++
T Consensus        33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G  112 (385)
T KOG1034|consen   33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG  112 (385)
T ss_pred             hhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence            4557899999999985    233444444455788898754322 3444443  3778899999986532  45788889


Q ss_pred             CCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEE
Q 036510           77 FDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVS  156 (288)
Q Consensus        77 ~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~  156 (288)
                      .-|.|+|.|+....   ....+.+|...|+.+.++|+. ..++++++.|..|++|+++++.....+.-.++|...|.+++
T Consensus       113 ~~GvIrVid~~~~~---~~~~~~ghG~sINeik~~p~~-~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD  188 (385)
T KOG1034|consen  113 YLGVIRVIDVVSGQ---CSKNYRGHGGSINEIKFHPDR-PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVD  188 (385)
T ss_pred             ceeEEEEEecchhh---hccceeccCccchhhhcCCCC-CcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEE
Confidence            99999999987654   334566899999999999986 56899999999999999998766656666789999999999


Q ss_pred             eCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCcee--e-------------------eeee---ccccCCcce
Q 036510          157 WAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWK--M-------------------DCFP---ALQMHTDWV  212 (288)
Q Consensus       157 ~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~-------------------~~~~---~~~~h~~~V  212 (288)
                      |++++              .+++|+|.|.++++|++...+..  +                   ...+   +-..|+++|
T Consensus       189 ~~~~g--------------d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV  254 (385)
T KOG1034|consen  189 FSLDG--------------DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV  254 (385)
T ss_pred             EcCCC--------------CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence            99987              78999999999999999632110  0                   1111   346899999


Q ss_pred             EEEEecCCCCCCCcEEEEEeCCCcEEEEEee-cCCC-----c-c-cceEeecc---ccCeEEE--EeecCCCEEEEEeCC
Q 036510          213 RDVAWAPNLGLPKSTIASASEDGKVIIWTVA-REGD-----Q-W-EGKVLHDF---KTPVYRV--SWSLTGNILAVADGN  279 (288)
Q Consensus       213 ~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~-~~~~-----~-~-~~~~~~~~---~~~i~~~--~~spdg~~l~s~~~d  279 (288)
                      .||+|--      .+++|-|-++.|..|.+- ..+.     + . ....+..+   ...|+-+  +|.|-++.||.|..-
T Consensus       255 DCvrw~g------d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~  328 (385)
T KOG1034|consen  255 DCVRWFG------DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQS  328 (385)
T ss_pred             HHHHHHh------hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCC
Confidence            9999975      479999999999999882 2111     1 1 11222222   1335444  566778999999999


Q ss_pred             CcEEEeEc
Q 036510          280 NNVTLWEE  287 (288)
Q Consensus       280 ~~v~~w~~  287 (288)
                      |+|.+||+
T Consensus       329 g~v~vwdL  336 (385)
T KOG1034|consen  329 GKVYVWDL  336 (385)
T ss_pred             CcEEEEEC
Confidence            99999996

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=1.4e-18  Score=153.30  Aligned_cols=243  Identities=21%  Similarity=0.285  Sum_probs=181.0

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccc-cCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510           12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHK-GAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN   90 (288)
Q Consensus        12 ~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~   90 (288)
                      .+|.+++++.+.+.||.+-.||+|.+|++.. ..-+...+.++. ..|-+++|+   ++..|.|.+.+|+|.-||+.+.+
T Consensus        26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~-~w~~~~vi~g~~drsIE~L~W~---e~~RLFS~g~sg~i~EwDl~~lk  101 (691)
T KOG2048|consen   26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSN-NWFLEPVIHGPEDRSIESLAWA---EGGRLFSSGLSGSITEWDLHTLK  101 (691)
T ss_pred             cceEEEEEeccCCceeeeccCCcEEEEccCC-CceeeEEEecCCCCceeeEEEc---cCCeEEeecCCceEEEEecccCc
Confidence            5789999999999999999999999999864 334445555554 678999997   27789999999999999998765


Q ss_pred             ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceeccc
Q 036510           91 EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG  170 (288)
Q Consensus        91 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~  170 (288)
                         ....+....+.|++++.+|.  +..++.|+.||.+..++...+. +...+.+.--+..+.+++|+|++         
T Consensus       102 ---~~~~~d~~gg~IWsiai~p~--~~~l~IgcddGvl~~~s~~p~~-I~~~r~l~rq~sRvLslsw~~~~---------  166 (691)
T KOG2048|consen  102 ---QKYNIDSNGGAIWSIAINPE--NTILAIGCDDGVLYDFSIGPDK-ITYKRSLMRQKSRVLSLSWNPTG---------  166 (691)
T ss_pred             ---eeEEecCCCcceeEEEeCCc--cceEEeecCCceEEEEecCCce-EEEEeecccccceEEEEEecCCc---------
Confidence               33344556789999999997  4668889999977666665432 22122222335779999999987         


Q ss_pred             ccCCCceeEEeecCCcEEEEEEeCCceeee---eeecccc-CCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCC
Q 036510          171 FLDPVQKLCSGGCDNTVKVWKLYNGIWKMD---CFPALQM-HTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG  246 (288)
Q Consensus       171 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~~~~~~~-h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~  246 (288)
                           ..+++|+.|+.|++||...+....-   .+..+.. -.--|++|.|-.+     .+||+|-+-|+|++||.....
T Consensus       167 -----~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-----~tI~sgDS~G~V~FWd~~~gT  236 (691)
T KOG2048|consen  167 -----TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-----STIASGDSAGTVTFWDSIFGT  236 (691)
T ss_pred             -----cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-----CcEEEecCCceEEEEcccCcc
Confidence                 6799999999999999988742210   0111111 2224888888754     589999999999999976421


Q ss_pred             CcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          247 DQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       247 ~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                         ..+....|.+.|.+++-.+++.++.+++.|++|.-+.
T Consensus       237 ---LiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~  273 (691)
T KOG2048|consen  237 ---LIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYS  273 (691)
T ss_pred             ---hhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEE
Confidence               1122334567899999999999999999999987665

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.85  E-value=3.7e-20  Score=162.30  Aligned_cols=105  Identities=19%  Similarity=0.363  Sum_probs=86.9

Q ss_pred             ceeEEeecCCcEEEEEEeCCc---eeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccce
Q 036510          176 QKLCSGGCDNTVKVWKLYNGI---WKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGK  252 (288)
Q Consensus       176 ~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~  252 (288)
                      ..|+.++.|+.|+||.+..+.   ...+....+.+|.+.|.++.|+|--   ...|++++.|.+|++||++....   ..
T Consensus       641 ~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLA---advLa~asyd~Ti~lWDl~~~~~---~~  714 (1012)
T KOG1445|consen  641 ERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLA---ADVLAVASYDSTIELWDLANAKL---YS  714 (1012)
T ss_pred             HHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchh---hhHhhhhhccceeeeeehhhhhh---hh
Confidence            479999999999999986531   1122344678999999999999953   35799999999999999987543   24


Q ss_pred             EeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          253 VLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       253 ~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      .+.+|...|.+++|||||+++|+.+.||+|+||+
T Consensus       715 ~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~  748 (1012)
T KOG1445|consen  715 RLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE  748 (1012)
T ss_pred             eeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence            4678889999999999999999999999999997

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=7.3e-19  Score=148.97  Aligned_cols=246  Identities=16%  Similarity=0.200  Sum_probs=178.7

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCC-EEEEeeCCCcEEEeecCCC
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGS-ILASCSFDGTVIIWKEGNS   89 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s~d~~v~iwd~~~~   89 (288)
                      .++|++++|.|...+|++|+.|++++||-+++...+.++.+.--.-+|...+|.+.  |. .+++++.-.....||+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~--G~~~i~~s~rrky~ysyDle~a  290 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPN--GHSVIFTSGRRKYLYSYDLETA  290 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCC--CceEEEecccceEEEEeecccc
Confidence            68999999999999999999999999999987766677777766788999999764  66 8999999999999999765


Q ss_pred             CceEEeEEeecCC-CceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceec
Q 036510           90 NEWIKDHVFEDHK-SSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG  168 (288)
Q Consensus        90 ~~~~~~~~~~~h~-~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~  168 (288)
                      +. .+.+...++. ..+....++|+  +.+++..+..|.|.+....++.-+....    -++.|..+.|+.++       
T Consensus       291 k~-~k~~~~~g~e~~~~e~FeVShd--~~fia~~G~~G~I~lLhakT~eli~s~K----ieG~v~~~~fsSds-------  356 (514)
T KOG2055|consen  291 KV-TKLKPPYGVEEKSMERFEVSHD--SNFIAIAGNNGHIHLLHAKTKELITSFK----IEGVVSDFTFSSDS-------  356 (514)
T ss_pred             cc-ccccCCCCcccchhheeEecCC--CCeEEEcccCceEEeehhhhhhhhheee----eccEEeeEEEecCC-------
Confidence            42 2223333333 34556677887  5578888899999987666553322222    23468889998776       


Q ss_pred             ccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCc-ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCC-
Q 036510          169 SGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTD-WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG-  246 (288)
Q Consensus       169 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~-~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~-  246 (288)
                             ..|+.++.+|.|.+||++..    .+++.+..... .=.+++.|++    +.+||+||.-|.|.|||.+... 
T Consensus       357 -------k~l~~~~~~GeV~v~nl~~~----~~~~rf~D~G~v~gts~~~S~n----g~ylA~GS~~GiVNIYd~~s~~~  421 (514)
T KOG2055|consen  357 -------KELLASGGTGEVYVWNLRQN----SCLHRFVDDGSVHGTSLCISLN----GSYLATGSDSGIVNIYDGNSCFA  421 (514)
T ss_pred             -------cEEEEEcCCceEEEEecCCc----ceEEEEeecCccceeeeeecCC----CceEEeccCcceEEEeccchhhc
Confidence                   56777778899999999875    34444321111 1255666666    4799999999999999965421 


Q ss_pred             ----Cc-------------------------------ccceEeec-----cc---------cCeEEEEeecCCCEEEEEe
Q 036510          247 ----DQ-------------------------------WEGKVLHD-----FK---------TPVYRVSWSLTGNILAVAD  277 (288)
Q Consensus       247 ----~~-------------------------------~~~~~~~~-----~~---------~~i~~~~~spdg~~l~s~~  277 (288)
                          .+                               ...+++|-     |.         +.|++++|||.|.++|.|-
T Consensus       422 s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN  501 (514)
T KOG2055|consen  422 STNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN  501 (514)
T ss_pred             cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeec
Confidence                00                               01112221     11         2589999999999999999


Q ss_pred             CCCcEEEeEc
Q 036510          278 GNNNVTLWEE  287 (288)
Q Consensus       278 ~d~~v~~w~~  287 (288)
                      .+|.|+||++
T Consensus       502 e~grv~l~kL  511 (514)
T KOG2055|consen  502 EAGRVHLFKL  511 (514)
T ss_pred             CCCceeeEee
Confidence            9999999986

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.84  E-value=1.7e-19  Score=143.06  Aligned_cols=257  Identities=18%  Similarity=0.226  Sum_probs=180.4

Q ss_pred             CCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEe-ccccCeEEEEecCCCCCCEEEEeeCCCcE
Q 036510            3 PQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLS-GHKGAVWEVAWAHPKFGSILASCSFDGTV   81 (288)
Q Consensus         3 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d~~v   81 (288)
                      |+..+.+|...|+++.|..++ +|.+|..-|.|++|++...+.  +..+. .|...|+.+.--+   +..|.+-+.|..+
T Consensus         6 P~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~--~~~~r~~g~~~it~lq~~p---~d~l~tqgRd~~L   79 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERD--LPLIRLFGRLFITNLQSIP---NDSLDTQGRDPLL   79 (323)
T ss_pred             CeeEeccccchheehhhccch-hhhcccccceEEEEEeecCcc--chhhhhhccceeeceeecC---CcchhhcCCCceE
Confidence            566788999999999999877 499999999999999975533  33445 4667777777543   4688899999999


Q ss_pred             EEeecCCCCceEEeEE-----------------------------------------------ee----cCCCceeEEEe
Q 036510           82 IIWKEGNSNEWIKDHV-----------------------------------------------FE----DHKSSVNSIDW  110 (288)
Q Consensus        82 ~iwd~~~~~~~~~~~~-----------------------------------------------~~----~h~~~v~~l~~  110 (288)
                      .+|++.-+. ++..+.                                               .+    ...+.++|.+|
T Consensus        80 ~lw~ia~s~-~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~  158 (323)
T KOG0322|consen   80 ILWTIAYSA-FISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK  158 (323)
T ss_pred             EEEEccCcc-eEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence            999874210 000000                                               00    12245666665


Q ss_pred             ccC-CCCeEEEEEeCCCcEEEEeecCCCCe-e------eEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEee
Q 036510          111 APH-ELGLCLACGSSDGNISVFTARADGGW-D------TSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGG  182 (288)
Q Consensus       111 ~p~-~~~~~l~sg~~d~~i~i~d~~~~~~~-~------~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~  182 (288)
                      .-. ++..++++|-.+|.+.+||+..+... +      .......|..+|.++++.+...              .=++|+
T Consensus       159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~--------------rGisgg  224 (323)
T KOG0322|consen  159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD--------------RGISGG  224 (323)
T ss_pred             cccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc--------------CCcCCC
Confidence            322 23457888999999999999875211 1      1112346888899999987652              234678


Q ss_pred             cCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeE
Q 036510          183 CDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVY  262 (288)
Q Consensus       183 ~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~  262 (288)
                      .+..+.+|.+.-.........++......|..|..-||    ++.+||+++|+.||+|+.++...   ...++-|++.|+
T Consensus       225 a~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD----~KIlATAGWD~RiRVyswrtl~p---LAVLkyHsagvn  297 (323)
T KOG0322|consen  225 ADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPD----GKILATAGWDHRIRVYSWRTLNP---LAVLKYHSAGVN  297 (323)
T ss_pred             ccccceeeeeccccCcccccceEEecCCCccceEEccC----CcEEeecccCCcEEEEEeccCCc---hhhhhhhhccee
Confidence            88888889885431111111122222334888999998    47899999999999999986532   245566778999


Q ss_pred             EEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          263 RVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       263 ~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      +++|+||-..+|+||.|..|-||++
T Consensus       298 ~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  298 AVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EEEeCCCCchhhhccCCceEEeeec
Confidence            9999999999999999999999985

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.6e-18  Score=157.62  Aligned_cols=237  Identities=21%  Similarity=0.347  Sum_probs=173.8

Q ss_pred             cccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC
Q 036510           10 HEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS   89 (288)
Q Consensus        10 h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~   89 (288)
                      |...|.+++..  +.+|++|+.+++|.+|..+.+...  ..+...+.++..++|+.+  |++++.||.|-.|++-++.+.
T Consensus        55 ~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~--~iL~Rftlp~r~~~v~g~--g~~iaagsdD~~vK~~~~~D~  128 (933)
T KOG1274|consen   55 SGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEED--TILARFTLPIRDLAVSGS--GKMIAAGSDDTAVKLLNLDDS  128 (933)
T ss_pred             cCceeEEEeec--ccceEEeeccceEEEeeCCCCCcc--ceeeeeeccceEEEEecC--CcEEEeecCceeEEEEecccc
Confidence            67777777654  669999999999999998654322  123344778999999864  899999999999999998776


Q ss_pred             CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEE-e---eccC-CCCeeEEEeCCCCCCC
Q 036510           90 NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSR-I---DQAH-PVGVTSVSWAPSTAPG  164 (288)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~-~---~~~~-~~~v~~i~~~p~~~~~  164 (288)
                      .   ....+.+|..+|.+|+|+|.  +.+||+.+-||+|++|++.++....... +   .... ...++.++|+|++   
T Consensus       129 s---~~~~lrgh~apVl~l~~~p~--~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~---  200 (933)
T KOG1274|consen  129 S---QEKVLRGHDAPVLQLSYDPK--GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG---  200 (933)
T ss_pred             c---hheeecccCCceeeeeEcCC--CCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCC---
Confidence            5   34567889999999999998  6789999999999999998653211111 0   1111 3346778999997   


Q ss_pred             ceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510          165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR  244 (288)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~  244 (288)
                                 ..|+....|+.|++|+...-...++.  ....|...+.+++|+|.    +.|||++.-||.|-|||.+.
T Consensus       201 -----------g~la~~~~d~~Vkvy~r~~we~~f~L--r~~~~ss~~~~~~wsPn----G~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  201 -----------GTLAVPPVDNTVKVYSRKGWELQFKL--RDKLSSSKFSDLQWSPN----GKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             -----------CeEEeeccCCeEEEEccCCceeheee--cccccccceEEEEEcCC----CcEEeeeccCCcEEEEeccc
Confidence                       45677778999999997654211111  11334444899999998    47999999999999999875


Q ss_pred             CCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEE
Q 036510          245 EGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTL  284 (288)
Q Consensus       245 ~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~  284 (288)
                      ..       .+.+...|.+++|.|+..-+-.-...|+.-+
T Consensus       264 ~~-------~~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~  296 (933)
T KOG1274|consen  264 HE-------RHEFKRAVCCEAWKPNANAITLITALGTLGV  296 (933)
T ss_pred             ch-------hccccceeEEEecCCCCCeeEEEeecccccc
Confidence            21       1555678999999999887655554444433

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.83  E-value=7.4e-18  Score=144.41  Aligned_cols=241  Identities=18%  Similarity=0.302  Sum_probs=178.1

Q ss_pred             cccc-ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            7 ETGH-EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         7 ~~~h-~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      +.++ ...|.+++|.++|. +++|..+|+|.||+....  +..++..+|.+.|.+++-..+  | .|+||+.|+.|..||
T Consensus       241 fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~--~~~k~~~aH~ggv~~L~~lr~--G-tllSGgKDRki~~Wd  314 (626)
T KOG2106|consen  241 FEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTN--RISKQVHAHDGGVFSLCMLRD--G-TLLSGGKDRKIILWD  314 (626)
T ss_pred             cccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCc--eEEeEeeecCCceEEEEEecC--c-cEeecCccceEEecc
Confidence            3344 36899999999995 889999999999997432  334555599999999998753  4 566699999999998


Q ss_pred             cCCC--------Cc---------------------eEEe--------EEeecCCCceeEEEeccCCCCeEEEEEeCCCcE
Q 036510           86 EGNS--------NE---------------------WIKD--------HVFEDHKSSVNSIDWAPHELGLCLACGSSDGNI  128 (288)
Q Consensus        86 ~~~~--------~~---------------------~~~~--------~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i  128 (288)
                      -.-.        +.                     .++.        .+..+|.+..+.++.+|+  ..+++++++|+.+
T Consensus       315 ~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps--~~q~~T~gqdk~v  392 (626)
T KOG2106|consen  315 DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPS--KNQLLTCGQDKHV  392 (626)
T ss_pred             ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCC--hhheeeccCcceE
Confidence            3100        00                     0000        012358888999999997  5678999999999


Q ss_pred             EEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccC
Q 036510          129 SVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMH  208 (288)
Q Consensus       129 ~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h  208 (288)
                      ++|+ ...-.|..     ....++.++.|.|.+               .++.|...|...+.|.++.    .++..... 
T Consensus       393 ~lW~-~~k~~wt~-----~~~d~~~~~~fhpsg---------------~va~Gt~~G~w~V~d~e~~----~lv~~~~d-  446 (626)
T KOG2106|consen  393 RLWN-DHKLEWTK-----IIEDPAECADFHPSG---------------VVAVGTATGRWFVLDTETQ----DLVTIHTD-  446 (626)
T ss_pred             EEcc-CCceeEEE-----EecCceeEeeccCcc---------------eEEEeeccceEEEEecccc----eeEEEEec-
Confidence            9998 22222322     233567889999874               5889999999999998773    22322223 


Q ss_pred             CcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          209 TDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       209 ~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      ..++++|+|+|+    +.+||.||.|+.|.||.+...+.... ..-+.+..+|+-+.||+|+++|.+-+.|=.|-.|+
T Consensus       447 ~~~ls~v~ysp~----G~~lAvgs~d~~iyiy~Vs~~g~~y~-r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  447 NEQLSVVRYSPD----GAFLAVGSHDNHIYIYRVSANGRKYS-RVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK  519 (626)
T ss_pred             CCceEEEEEcCC----CCEEEEecCCCeEEEEEECCCCcEEE-EeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence            668999999998    47999999999999999987643321 22223348999999999999999999999999994

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.83  E-value=5.5e-19  Score=154.95  Aligned_cols=261  Identities=21%  Similarity=0.286  Sum_probs=164.2

Q ss_pred             EEEcCC---CCEEEEeeCCCcEEEEEeCCCCc----eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC
Q 036510           17 VAMDYY---GKRLATASSDYSIKIIGVGNNTS----QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS   89 (288)
Q Consensus        17 ~~~s~~---g~~l~s~~~d~~i~lwd~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~   89 (288)
                      .+|++-   .+.|+-+..||.|.++|......    ..+.-..+|...|.++.|.+  ....|++++.|.+++.||+...
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap--ge~~lVsasGDsT~r~Wdvk~s  132 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP--GESLLVSASGDSTIRPWDVKTS  132 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC--CceeEEEccCCceeeeeeeccc
Confidence            567642   46788899999999999753211    22455668999999999986  3578999999999999999765


Q ss_pred             CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCC--CeeeE--EeeccCCCC---eeE----E-Ee
Q 036510           90 NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADG--GWDTS--RIDQAHPVG---VTS----V-SW  157 (288)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~--~~~~~--~~~~~~~~~---v~~----i-~~  157 (288)
                      .. .-...+.+|.+.|.+++|.|.+ ..++++|+.||.|.|||+|-..  ....+  .....|+..   ..-    + .|
T Consensus       133 ~l-~G~~~~~GH~~SvkS~cf~~~n-~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~  210 (720)
T KOG0321|consen  133 RL-VGGRLNLGHTGSVKSECFMPTN-PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW  210 (720)
T ss_pred             ee-ecceeecccccccchhhhccCC-CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc
Confidence            42 2223467899999999999986 5679999999999999998543  10000  011112210   000    0 00


Q ss_pred             -CCCCCCCceecccccCCCceeEEeec-CCcEEEEEEeCCceee--eeeeccccCCc---ceEEEEecCCCCCCCcEEEE
Q 036510          158 -APSTAPGALVGSGFLDPVQKLCSGGC-DNTVKVWKLYNGIWKM--DCFPALQMHTD---WVRDVAWAPNLGLPKSTIAS  230 (288)
Q Consensus       158 -~p~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~--~~~~~~~~h~~---~V~~v~~sp~~~~~~~~l~s  230 (288)
                       .+.......+...++.+...|+++|+ |+.||+||++......  +......-|..   .+.-+.+.-|.  .+.+|.+
T Consensus       211 kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs--sGt~L~A  288 (720)
T KOG0321|consen  211 KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS--SGTYLFA  288 (720)
T ss_pred             ccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC--CCCeEEE
Confidence             00000011122345556678998888 9999999998753221  11111111111   22233344443  1345555


Q ss_pred             EeCCCcEEEEEeecCCCcccceEeeccccC----e-EEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          231 ASEDGKVIIWTVAREGDQWEGKVLHDFKTP----V-YRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       231 ~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~----i-~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      -+.|+.|.+|++.....    .++..|...    . ..-..+||+.++++|+.|..+.+|.+
T Consensus       289 sCtD~sIy~ynm~s~s~----sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~v  346 (720)
T KOG0321|consen  289 SCTDNSIYFYNMRSLSI----SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVV  346 (720)
T ss_pred             EecCCcEEEEeccccCc----CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeee
Confidence            55599999999875422    233333221    1 22356899999999999999999974

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.83  E-value=9.7e-19  Score=142.24  Aligned_cols=209  Identities=22%  Similarity=0.340  Sum_probs=168.1

Q ss_pred             cccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEee
Q 036510           54 HKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTA  133 (288)
Q Consensus        54 h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~  133 (288)
                      -..+|++-+|+++  ...++.+-....|.|+.......|.+.++++.|...|++++|+|.  ...+++|+.|.+-++|..
T Consensus         9 ~~~pitchAwn~d--rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~--snrIvtcs~drnayVw~~   84 (361)
T KOG1523|consen    9 LLEPITCHAWNSD--RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPK--SNRIVTCSHDRNAYVWTQ   84 (361)
T ss_pred             ccCceeeeeecCC--CceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCC--CCceeEccCCCCcccccc
Confidence            3568999999865  889999999999999998777668889999999999999999997  456899999999999999


Q ss_pred             cCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCC--ceeeeeeeccccCCcc
Q 036510          134 RADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNG--IWKMDCFPALQMHTDW  211 (288)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~h~~~  211 (288)
                      ..++.|.+...+.-++...+++.|+|..              +.|++||.-+.|.+|=.+..  -|-  ..+.-+-+.+.
T Consensus        85 ~~~~~WkptlvLlRiNrAAt~V~WsP~e--------------nkFAVgSgar~isVcy~E~ENdWWV--sKhikkPirSt  148 (361)
T KOG1523|consen   85 PSGGTWKPTLVLLRINRAATCVKWSPKE--------------NKFAVGSGARLISVCYYEQENDWWV--SKHIKKPIRST  148 (361)
T ss_pred             CCCCeeccceeEEEeccceeeEeecCcC--------------ceEEeccCccEEEEEEEecccceeh--hhhhCCccccc
Confidence            8888887776777788999999999987              88999999999999866432  111  11122346677


Q ss_pred             eEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCC-------c-----ccceEeecc---ccCeEEEEeecCCCEEEEE
Q 036510          212 VRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGD-------Q-----WEGKVLHDF---KTPVYRVSWSLTGNILAVA  276 (288)
Q Consensus       212 V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~-------~-----~~~~~~~~~---~~~i~~~~~spdg~~l~s~  276 (288)
                      |.+++|+|+.    -+|++||.|+.+|++....+.-       +     ..+.++.+.   .+++.++.|+|+|..|+..
T Consensus       149 v~sldWhpnn----VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv  224 (361)
T KOG1523|consen  149 VTSLDWHPNN----VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWV  224 (361)
T ss_pred             eeeeeccCCc----ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEe
Confidence            9999999984    5799999999999998865421       0     122223333   3689999999999999999


Q ss_pred             eCCCcEEEeE
Q 036510          277 DGNNNVTLWE  286 (288)
Q Consensus       277 ~~d~~v~~w~  286 (288)
                      +.|++|.+=|
T Consensus       225 ~Hds~v~~~d  234 (361)
T KOG1523|consen  225 GHDSTVSFVD  234 (361)
T ss_pred             cCCCceEEee
Confidence            9999998755

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=1.7e-18  Score=140.15  Aligned_cols=196  Identities=15%  Similarity=0.288  Sum_probs=141.1

Q ss_pred             cccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEee
Q 036510           54 HKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTA  133 (288)
Q Consensus        54 h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~  133 (288)
                      ..+.|..+.|++ . +..|+.+|.||++++|+.....   . +....|..++.+++|.++   ..+++|+.||.|+.+|+
T Consensus        12 P~d~IS~v~f~~-~-~~~LLvssWDgslrlYdv~~~~---l-~~~~~~~~plL~c~F~d~---~~~~~G~~dg~vr~~Dl   82 (323)
T KOG1036|consen   12 PEDGISSVKFSP-S-SSDLLVSSWDGSLRLYDVPANS---L-KLKFKHGAPLLDCAFADE---STIVTGGLDGQVRRYDL   82 (323)
T ss_pred             ChhceeeEEEcC-c-CCcEEEEeccCcEEEEeccchh---h-hhheecCCceeeeeccCC---ceEEEeccCceEEEEEe
Confidence            367799999984 3 5566666799999999986542   1 122348889999999874   35789999999999999


Q ss_pred             cCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceE
Q 036510          134 RADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVR  213 (288)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~  213 (288)
                      ..+..    .....|..++.+|.+++..              +.+++||+|++|++||.+...    ..-.+. ....|.
T Consensus        83 n~~~~----~~igth~~~i~ci~~~~~~--------------~~vIsgsWD~~ik~wD~R~~~----~~~~~d-~~kkVy  139 (323)
T KOG1036|consen   83 NTGNE----DQIGTHDEGIRCIEYSYEV--------------GCVISGSWDKTIKFWDPRNKV----VVGTFD-QGKKVY  139 (323)
T ss_pred             cCCcc----eeeccCCCceEEEEeeccC--------------CeEEEcccCccEEEEeccccc----cccccc-cCceEE
Confidence            87543    2345688999999998765              679999999999999998531    111211 122577


Q ss_pred             EEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcc--------------------------------------------
Q 036510          214 DVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQW--------------------------------------------  249 (288)
Q Consensus       214 ~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~--------------------------------------------  249 (288)
                      ++..+.      ..|+.|..|..+.+||++....+.                                            
T Consensus       140 ~~~v~g------~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~  213 (323)
T KOG1036|consen  140 CMDVSG------NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQ  213 (323)
T ss_pred             EEeccC------CEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHh
Confidence            776554      467778888888888887542110                                            


Q ss_pred             -cceEeeccc---------cCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          250 -EGKVLHDFK---------TPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       250 -~~~~~~~~~---------~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                       .+-.++.|.         =||++++|||--+.||+|++||.|.+||.
T Consensus       214 skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~  261 (323)
T KOG1036|consen  214 SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDL  261 (323)
T ss_pred             hhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccC
Confidence             000111221         16899999999999999999999999984

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.83  E-value=2.9e-18  Score=146.88  Aligned_cols=239  Identities=20%  Similarity=0.335  Sum_probs=178.5

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCC----------c----------e-e-----------------eEE
Q 036510            9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNT----------S----------Q-H-----------------LAK   50 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~----------~----------~-~-----------------~~~   50 (288)
                      .|++.|++++.-.+|+ |+||++|..|.+||-+-..          +          . .                 -..
T Consensus       285 aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~  363 (626)
T KOG2106|consen  285 AHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLT  363 (626)
T ss_pred             ecCCceEEEEEecCcc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEE
Confidence            8999999999999996 6669999999999732000          0          0 0                 011


Q ss_pred             EeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEE
Q 036510           51 LSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISV  130 (288)
Q Consensus        51 ~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i  130 (288)
                      ..+|.+..|.++..+  +.++|++++.|+.+++|+ ...-.|.+  .   ..+++.|++|+|.  + .+|.|...|...+
T Consensus       364 v~gh~delwgla~hp--s~~q~~T~gqdk~v~lW~-~~k~~wt~--~---~~d~~~~~~fhps--g-~va~Gt~~G~w~V  432 (626)
T KOG2106|consen  364 VQGHGDELWGLATHP--SKNQLLTCGQDKHVRLWN-DHKLEWTK--I---IEDPAECADFHPS--G-VVAVGTATGRWFV  432 (626)
T ss_pred             EEecccceeeEEcCC--ChhheeeccCcceEEEcc-CCceeEEE--E---ecCceeEeeccCc--c-eEEEeeccceEEE
Confidence            237889999999754  368999999999999998 33333322  2   3568999999997  5 7899999999999


Q ss_pred             EeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCc
Q 036510          131 FTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTD  210 (288)
Q Consensus       131 ~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~  210 (288)
                      .|..+..   ....... +.++..+.|+|++              .+|+.|+.|+.|.||.+..+.+....+..  -|..
T Consensus       433 ~d~e~~~---lv~~~~d-~~~ls~v~ysp~G--------------~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k--~~gs  492 (626)
T KOG2106|consen  433 LDTETQD---LVTIHTD-NEQLSVVRYSPDG--------------AFLAVGSHDNHIYIYRVSANGRKYSRVGK--CSGS  492 (626)
T ss_pred             Eecccce---eEEEEec-CCceEEEEEcCCC--------------CEEEEecCCCeEEEEEECCCCcEEEEeee--ecCc
Confidence            9987632   2222223 7789999999998              78999999999999999776444332222  2337


Q ss_pred             ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEee------------------ccccCeEEEEeecCCCE
Q 036510          211 WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLH------------------DFKTPVYRVSWSLTGNI  272 (288)
Q Consensus       211 ~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~------------------~~~~~i~~~~~spdg~~  272 (288)
                      +|..++||+|+    ++|++-|.|-.|-.|......+.   ..++                  .++..|..++-+...++
T Consensus       493 ~ithLDwS~Ds----~~~~~~S~d~eiLyW~~~~~~~~---ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~  565 (626)
T KOG2106|consen  493 PITHLDWSSDS----QFLVSNSGDYEILYWKPSECKQI---TSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKL  565 (626)
T ss_pred             eeEEeeecCCC----ceEEeccCceEEEEEccccCccc---ceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhh
Confidence            89999999985    78999999999999965543221   1111                  11235677788889999


Q ss_pred             EEEEeCCCcEEEeE
Q 036510          273 LAVADGNNNVTLWE  286 (288)
Q Consensus       273 l~s~~~d~~v~~w~  286 (288)
                      +|+|+..|+|+|+.
T Consensus       566 lA~gdd~g~v~lf~  579 (626)
T KOG2106|consen  566 LASGDDFGKVHLFS  579 (626)
T ss_pred             hhccccCceEEEEc
Confidence            99999999999986

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.82  E-value=6.2e-17  Score=142.25  Aligned_cols=249  Identities=30%  Similarity=0.492  Sum_probs=186.2

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEecccc-CeEEEEecCCCCCC-EEEEeeC-CCcEE
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKG-AVWEVAWAHPKFGS-ILASCSF-DGTVI   82 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~-~l~s~s~-d~~v~   82 (288)
                      ...+|+..+..+.|.+.+..++.++.|+.+.+|+..... ..+..+.++.. .+..+.+. ..++. +++..+. |+.++
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~  137 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVK  137 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEE
Confidence            355899999999999999999999999999999986542 24666666443 67777763 22344 5555455 99999


Q ss_pred             EeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeC-CCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCC
Q 036510           83 IWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSS-DGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPST  161 (288)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~  161 (288)
                      +|+.....  .....+..|...|..++|+|+.  ..++.++. |+.+++|+.....   .......|...+.++.|+|++
T Consensus       138 ~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~  210 (466)
T COG2319         138 LWDLSTPG--KLIRTLEGHSESVTSLAFSPDG--KLLASGSSLDGTIKLWDLRTGK---PLSTLAGHTDPVSSLAFSPDG  210 (466)
T ss_pred             EEEecCCC--eEEEEEecCcccEEEEEECCCC--CEEEecCCCCCceEEEEcCCCc---eEEeeccCCCceEEEEEcCCc
Confidence            99987511  2445677899999999999984  46677765 9999999998632   233445688999999999876


Q ss_pred             CCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeee-ccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEE
Q 036510          162 APGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFP-ALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIW  240 (288)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw  240 (288)
                      .             ..+++++.|+.|++||...+    .... .+.+|...+ -..|+|+.    .++++++.|+.+++|
T Consensus       211 ~-------------~~~~~~~~d~~i~~wd~~~~----~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~d~~~~~~  268 (466)
T COG2319         211 G-------------LLIASGSSDGTIRLWDLSTG----KLLRSTLSGHSDSV-VSSFSPDG----SLLASGSSDGTIRLW  268 (466)
T ss_pred             c-------------eEEEEecCCCcEEEEECCCC----cEEeeecCCCCcce-eEeECCCC----CEEEEecCCCcEEEe
Confidence            2             24556699999999987744    2333 567787765 33799874    578899999999999


Q ss_pred             EeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          241 TVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      +......  .......+..++.++.|+|++..+++++.|+.+++|+.
T Consensus       269 ~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~  313 (466)
T COG2319         269 DLRSSSS--LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDL  313 (466)
T ss_pred             eecCCCc--EEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEc
Confidence            9875432  11222455678999999999999999999989999974

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.82  E-value=6.5e-19  Score=150.60  Aligned_cols=222  Identities=18%  Similarity=0.244  Sum_probs=170.8

Q ss_pred             EEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEE
Q 036510           15 HDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIK   94 (288)
Q Consensus        15 ~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~   94 (288)
                      .||+......|+++||..+.|+|||+...  .+.+.+.+|+..|+++.|...  .++||+++..|.|.|....++.   .
T Consensus        83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k--l~hr~lkdh~stvt~v~YN~~--DeyiAsvs~gGdiiih~~~t~~---~  155 (673)
T KOG4378|consen   83 FCVACASQSLYEISGGQSGCVKIWDLRAK--LIHRFLKDHQSTVTYVDYNNT--DEYIASVSDGGDIIIHGTKTKQ---K  155 (673)
T ss_pred             HHHhhhhcceeeeccCcCceeeehhhHHH--HHhhhccCCcceeEEEEecCC--cceeEEeccCCcEEEEecccCc---c
Confidence            45555555689999999999999999632  345668899999999999754  5899999999999999886643   2


Q ss_pred             eEEeecC-CCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccC
Q 036510           95 DHVFEDH-KSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLD  173 (288)
Q Consensus        95 ~~~~~~h-~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~  173 (288)
                      ..++... .+.|.-++++|.. ..+|.+++.+|.+.+||+.....  .....+.|..+...|.|+|...           
T Consensus       156 tt~f~~~sgqsvRll~ys~sk-r~lL~~asd~G~VtlwDv~g~sp--~~~~~~~HsAP~~gicfspsne-----------  221 (673)
T KOG4378|consen  156 TTTFTIDSGQSVRLLRYSPSK-RFLLSIASDKGAVTLWDVQGMSP--IFHASEAHSAPCRGICFSPSNE-----------  221 (673)
T ss_pred             ccceecCCCCeEEEeeccccc-ceeeEeeccCCeEEEEeccCCCc--ccchhhhccCCcCcceecCCcc-----------
Confidence            2234322 3456688999973 45788889999999999875432  2345678999999999999863           


Q ss_pred             CCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceE
Q 036510          174 PVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKV  253 (288)
Q Consensus       174 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~  253 (288)
                        .+|++.|.|+.|.+||.+..    +....+. -..+...|+|+|+    +.+|++|+..|.|..||++..+.+  ...
T Consensus       222 --~l~vsVG~Dkki~~yD~~s~----~s~~~l~-y~~Plstvaf~~~----G~~L~aG~s~G~~i~YD~R~~k~P--v~v  288 (673)
T KOG4378|consen  222 --ALLVSVGYDKKINIYDIRSQ----ASTDRLT-YSHPLSTVAFSEC----GTYLCAGNSKGELIAYDMRSTKAP--VAV  288 (673)
T ss_pred             --ceEEEecccceEEEeecccc----cccceee-ecCCcceeeecCC----ceEEEeecCCceEEEEecccCCCC--ceE
Confidence              67999999999999999753    1222221 2335789999997    489999999999999999976544  456


Q ss_pred             eeccccCeEEEEeecCC
Q 036510          254 LHDFKTPVYRVSWSLTG  270 (288)
Q Consensus       254 ~~~~~~~i~~~~~spdg  270 (288)
                      .+-|.+.|++++|-|.-
T Consensus       289 ~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  289 RSAHDASVTRVAFQPSP  305 (673)
T ss_pred             eeecccceeEEEeeecc
Confidence            67788889999998765

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=2.1e-18  Score=143.76  Aligned_cols=255  Identities=16%  Similarity=0.204  Sum_probs=180.7

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCC----CCceeeEEEec-cccCeEEEEecCCCCCCEEEEeeCCCc
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGN----NTSQHLAKLSG-HKGAVWEVAWAHPKFGSILASCSFDGT   80 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~----~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~d~~   80 (288)
                      -..+|.+-|+.+.|+.++++|+||+.|..+++|.++.    ...++++.... |...|.+++|..  .+..+.||..+++
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~--~N~~~~SG~~~~~  128 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL--ENRFLYSGERWGT  128 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc--CCeeEecCCCcce
Confidence            3458999999999999999999999999999998852    22244554443 448899999964  3678889999999


Q ss_pred             EEEeecCCCCceEEeEEeecCC---CceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEe
Q 036510           81 VIIWKEGNSNEWIKDHVFEDHK---SSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSW  157 (288)
Q Consensus        81 v~iwd~~~~~~~~~~~~~~~h~---~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~  157 (288)
                      |...|+.+..+   + ....|.   +.|+.++.+|.  ...+++.+.++.+.+||.+............-.+....++-|
T Consensus       129 VI~HDiEt~qs---i-~V~~~~~~~~~VY~m~~~P~--DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F  202 (609)
T KOG4227|consen  129 VIKHDIETKQS---I-YVANENNNRGDVYHMDQHPT--DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEF  202 (609)
T ss_pred             eEeeeccccee---e-eeecccCcccceeecccCCC--CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeee
Confidence            99999987542   1 122344   48999999997  456888899999999999875422222222333456778889


Q ss_pred             CCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCcee----------------------------------eeeee
Q 036510          158 APSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWK----------------------------------MDCFP  203 (288)
Q Consensus       158 ~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~----------------------------------~~~~~  203 (288)
                      .|..+             .+|++.+..+-+.+||.+..+..                                  .++.-
T Consensus       203 ~P~~P-------------~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~  269 (609)
T KOG4227|consen  203 HPETP-------------ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPL  269 (609)
T ss_pred             cCCCc-------------eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCE
Confidence            98875             67778888888888988543110                                  00000


Q ss_pred             ccccCCc------------------ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCc-----------------
Q 036510          204 ALQMHTD------------------WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ-----------------  248 (288)
Q Consensus       204 ~~~~h~~------------------~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~-----------------  248 (288)
                      .+.-|..                  .+.+++|..+     ..+++||++-.|.+|.+-...+.                 
T Consensus       270 ~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D-----~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~  344 (609)
T KOG4227|consen  270 YFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD-----YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEI  344 (609)
T ss_pred             EeeeecccceeEeccCCCCcceeeeeeeeeeeecc-----eeeeccCcccceEEEecCCCccccCccccCcchhhCchhh
Confidence            0111221                  2334444443     46999999999999998542110                 


Q ss_pred             ---ccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          249 ---WEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       249 ---~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                         .+...+.+|.+.++-+-|+|-..+|++.+-.+.++||.
T Consensus       345 ~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  345 FIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS  385 (609)
T ss_pred             eecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence               12234567888889999999999999999999999995

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.82  E-value=3.2e-17  Score=139.58  Aligned_cols=226  Identities=11%  Similarity=0.077  Sum_probs=147.6

Q ss_pred             CCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEE-EEeeCCCcEEEeecCCCCceEEeEEeecC
Q 036510           23 GKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSIL-ASCSFDGTVIIWKEGNSNEWIKDHVFEDH  101 (288)
Q Consensus        23 g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~d~~v~iwd~~~~~~~~~~~~~~~h  101 (288)
                      ++.++|++.|+.+++||....  +.+..+.+|.. +..++|+++  +..+ ++++.++.+++||..++.   ....+..+
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~--~~~~~~~~~~~-~~~l~~~~d--g~~l~~~~~~~~~v~~~d~~~~~---~~~~~~~~   72 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATL--EVTRTFPVGQR-PRGITLSKD--GKLLYVCASDSDTIQVIDLATGE---VIGTLPSG   72 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCC--ceEEEEECCCC-CCceEECCC--CCEEEEEECCCCeEEEEECCCCc---EEEeccCC
Confidence            357899999999999998543  55667766544 678999864  6655 677889999999987654   22334333


Q ss_pred             CCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEe
Q 036510          102 KSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSG  181 (288)
Q Consensus       102 ~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~  181 (288)
                      . .+..+.|+|++ ..++++++.++.|++||++.....   ...+ +...+..+.|+|++              .+++++
T Consensus        73 ~-~~~~~~~~~~g-~~l~~~~~~~~~l~~~d~~~~~~~---~~~~-~~~~~~~~~~~~dg--------------~~l~~~  132 (300)
T TIGR03866        73 P-DPELFALHPNG-KILYIANEDDNLVTVIDIETRKVL---AEIP-VGVEPEGMAVSPDG--------------KIVVNT  132 (300)
T ss_pred             C-CccEEEECCCC-CEEEEEcCCCCeEEEEECCCCeEE---eEee-CCCCcceEEECCCC--------------CEEEEE
Confidence            3 35678899984 344556677899999999764321   1111 22346788999987              667777


Q ss_pred             ecCC-cEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEE-EEEeCCCcEEEEEeecCCCcccceE-eec--
Q 036510          182 GCDN-TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTI-ASASEDGKVIIWTVAREGDQWEGKV-LHD--  256 (288)
Q Consensus       182 ~~d~-~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l-~s~s~D~~i~iw~~~~~~~~~~~~~-~~~--  256 (288)
                      +.++ .+..||..++.    ....+. .......+.|+|++    ++| +++..|+.|++||++..+..  ... ...  
T Consensus       133 ~~~~~~~~~~d~~~~~----~~~~~~-~~~~~~~~~~s~dg----~~l~~~~~~~~~v~i~d~~~~~~~--~~~~~~~~~  201 (300)
T TIGR03866       133 SETTNMAHFIDTKTYE----IVDNVL-VDQRPRFAEFTADG----KELWVSSEIGGTVSVIDVATRKVI--KKITFEIPG  201 (300)
T ss_pred             ecCCCeEEEEeCCCCe----EEEEEE-cCCCccEEEECCCC----CEEEEEcCCCCEEEEEEcCcceee--eeeeecccc
Confidence            6664 46678986652    211111 12235778999984    455 45556999999998753211  111 110  


Q ss_pred             -c--ccCeEEEEeecCCCEEEEE-eCCCcEEEeEc
Q 036510          257 -F--KTPVYRVSWSLTGNILAVA-DGNNNVTLWEE  287 (288)
Q Consensus       257 -~--~~~i~~~~~spdg~~l~s~-~~d~~v~~w~~  287 (288)
                       .  ......++|+|||++++++ ..++.|.+||.
T Consensus       202 ~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~  236 (300)
T TIGR03866       202 VHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDA  236 (300)
T ss_pred             cccccCCccceEECCCCCEEEEEcCCCCeEEEEEC
Confidence             0  1123568999999986554 45678999985

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.81  E-value=8.7e-20  Score=164.17  Aligned_cols=255  Identities=24%  Similarity=0.339  Sum_probs=181.4

Q ss_pred             ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510            7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE   86 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~   86 (288)
                      +.||-.+|+|+.|...|+++.+|+.|..++||..+  +..++.+..||.+.++.++.+..  ...++++|.|..|++|.+
T Consensus       186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~e--t~~~lAs~rGhs~ditdlavs~~--n~~iaaaS~D~vIrvWrl  261 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSME--TARCLASCRGHSGDITDLAVSSN--NTMIAAASNDKVIRVWRL  261 (1113)
T ss_pred             HHhhhhheeeeeeccccceEeecCccceeeeeecc--chhhhccCCCCccccchhccchh--hhhhhhcccCceEEEEec
Confidence            45899999999999999999999999999999863  45788999999999999998753  678899999999999998


Q ss_pred             CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecC-CCCeeeEEeecc-CCCCeeEEEeCCCCCCC
Q 036510           87 GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA-DGGWDTSRIDQA-HPVGVTSVSWAPSTAPG  164 (288)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~-~~~~~~~~~~~~-~~~~v~~i~~~p~~~~~  164 (288)
                      .++.   ++..+.+|.+.|++++|+|-      ++.+.||++++||.+- ...+. ....+. ....+.++.|...+. .
T Consensus       262 ~~~~---pvsvLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~-prp~~~~~~~~~~s~~~~~~~~-~  330 (1113)
T KOG0644|consen  262 PDGA---PVSVLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYV-PRPLKFTEKDLVDSILFENNGD-R  330 (1113)
T ss_pred             CCCc---hHHHHhccccceeeeccCcc------ccCCCCCceEeccccccccccC-CCCCCcccccceeeeecccccc-c
Confidence            7765   45567899999999999996      3568999999999872 11111 111111 112344444432221 0


Q ss_pred             ceec--------------------cccc----CCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCC
Q 036510          165 ALVG--------------------SGFL----DPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPN  220 (288)
Q Consensus       165 ~~~~--------------------~~~~----~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~  220 (288)
                      +.++                    ..++    +.....+++=.+-.+++|++.++    ...+.+.+|.+++..+.++|-
T Consensus       331 f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g----~l~H~l~ghsd~~yvLd~Hpf  406 (1113)
T KOG0644|consen  331 FLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG----QLLHNLMGHSDEVYVLDVHPF  406 (1113)
T ss_pred             cccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccc----hhhhhhcccccceeeeeecCC
Confidence            0000                    0000    00122333334556788998887    357788999999999999995


Q ss_pred             CCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          221 LGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       221 ~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      .   +..-.+++.||...|||+...- + ......+ +..+...+||+||+.++....-|.+.|..
T Consensus       407 n---~ri~msag~dgst~iwdi~eg~-p-ik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g  466 (1113)
T KOG0644|consen  407 N---PRIAMSAGYDGSTIIWDIWEGI-P-IKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYILG  466 (1113)
T ss_pred             C---cHhhhhccCCCceEeeecccCC-c-ceeeecc-cceeeccccCCCCceEecCCCCCceEEec
Confidence            3   3455688899999999987531 1 1111122 45678899999999999888888888764

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.81  E-value=6.5e-18  Score=137.66  Aligned_cols=245  Identities=16%  Similarity=0.265  Sum_probs=164.7

Q ss_pred             eEEEEEcCCCCEEEEeeCCCcEEEEEeCCC------Cce-------eeEEEeccccCeEEEEecC-----CCCCCEEEEe
Q 036510           14 VHDVAMDYYGKRLATASSDYSIKIIGVGNN------TSQ-------HLAKLSGHKGAVWEVAWAH-----PKFGSILASC   75 (288)
Q Consensus        14 v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~------~~~-------~~~~~~~h~~~v~~~~~~~-----~~~~~~l~s~   75 (288)
                      ..+..|+|||.-|++-+.|..+++|++...      ...       .++-.  -...|+..+|-+     +++..++++.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~--eg~tvydy~wYs~M~s~qP~t~l~a~s  129 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ--EGETVYDYCWYSRMKSDQPSTNLFAVS  129 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEec--cCCEEEEEEeeeccccCCCccceeeec
Confidence            345689999999999999999999987421      000       01111  124466666641     2356799999


Q ss_pred             eCCCcEEEeecCCCCceEEeEEeecCCCc---eeEEEeccCCCCeEEEEEeCCCcEEEEeecC-CCCeeeEEe----ecc
Q 036510           76 SFDGTVIIWKEGNSNEWIKDHVFEDHKSS---VNSIDWAPHELGLCLACGSSDGNISVFTARA-DGGWDTSRI----DQA  147 (288)
Q Consensus        76 s~d~~v~iwd~~~~~~~~~~~~~~~h~~~---v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~-~~~~~~~~~----~~~  147 (288)
                      +.+.-|+|||..+++.-...+ ...|.+.   ..+|.|+||  +.++.+ +..+.|++||+.+ +..+.....    ..+
T Consensus       130 sr~~PIh~wdaftG~lraSy~-~ydh~de~taAhsL~Fs~D--Geqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~g  205 (406)
T KOG2919|consen  130 SRDQPIHLWDAFTGKLRASYR-AYDHQDEYTAAHSLQFSPD--GEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFG  205 (406)
T ss_pred             cccCceeeeeccccccccchh-hhhhHHhhhhheeEEecCC--CCeEee-cccceEEEeeccCCCCCCcchhhhhccccc
Confidence            999999999998775211111 1235544   457999999  455554 5778999999954 332222111    112


Q ss_pred             CCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcE
Q 036510          148 HPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKST  227 (288)
Q Consensus       148 ~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~  227 (288)
                      -..-+.+++|+|...             ..++.|+.-..+-|+.-...    .....+.+|.+.|+-++|++++    +.
T Consensus       206 q~giisc~a~sP~~~-------------~~~a~gsY~q~~giy~~~~~----~pl~llggh~gGvThL~~~edG----n~  264 (406)
T KOG2919|consen  206 QKGIISCFAFSPMDS-------------KTLAVGSYGQRVGIYNDDGR----RPLQLLGGHGGGVTHLQWCEDG----NK  264 (406)
T ss_pred             ccceeeeeeccCCCC-------------cceeeecccceeeeEecCCC----CceeeecccCCCeeeEEeccCc----Ce
Confidence            234467889999874             57889999888888775443    3455677999999999999985    56


Q ss_pred             EEEEeC-CCcEEEEEeecCCCcccceEeecccc-CeEEEEe--ecCCCEEEEEeCCCcEEEeEc
Q 036510          228 IASASE-DGKVIIWTVAREGDQWEGKVLHDFKT-PVYRVSW--SLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       228 l~s~s~-D~~i~iw~~~~~~~~~~~~~~~~~~~-~i~~~~~--spdg~~l~s~~~d~~v~~w~~  287 (288)
                      |-+|+. |-.|-.||++.-.++.-.  +..|.. .=-++.|  -|+|++|++|+.||.|++||.
T Consensus       265 lfsGaRk~dkIl~WDiR~~~~pv~~--L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdl  326 (406)
T KOG2919|consen  265 LFSGARKDDKILCWDIRYSRDPVYA--LERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDL  326 (406)
T ss_pred             ecccccCCCeEEEEeehhccchhhh--hhhhccCccceEEEecCCCCceeeccCCCccEEEEec
Confidence            778886 889999999864332110  111111 1113444  489999999999999999995

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=2.6e-17  Score=145.35  Aligned_cols=244  Identities=22%  Similarity=0.296  Sum_probs=178.5

Q ss_pred             ccc-ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510            8 TGH-EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE   86 (288)
Q Consensus         8 ~~h-~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~   86 (288)
                      .|+ ...|.+++|++ |.+|+|.+.+|+|.-||+.  +.+++..++.-.+.||+++..+.  +..++.|+.||.+..++.
T Consensus        65 ~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~--~lk~~~~~d~~gg~IWsiai~p~--~~~l~IgcddGvl~~~s~  139 (691)
T KOG2048|consen   65 HGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLH--TLKQKYNIDSNGGAIWSIAINPE--NTILAIGCDDGVLYDFSI  139 (691)
T ss_pred             ecCCCCceeeEEEcc-CCeEEeecCCceEEEEecc--cCceeEEecCCCcceeEEEeCCc--cceEEeecCCceEEEEec
Confidence            355 57899999995 4479999999999999995  34677788888899999998753  689999999997777766


Q ss_pred             CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEe-ecc----CCCCeeEEEeCCCC
Q 036510           87 GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRI-DQA----HPVGVTSVSWAPST  161 (288)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~-~~~----~~~~v~~i~~~p~~  161 (288)
                      ..+. ..-...+...++.|.+++|+|+  +..+++|+.||.|++||...+........ ...    .+.-|.++.|-.+ 
T Consensus       140 ~p~~-I~~~r~l~rq~sRvLslsw~~~--~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-  215 (691)
T KOG2048|consen  140 GPDK-ITYKRSLMRQKSRVLSLSWNPT--GTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-  215 (691)
T ss_pred             CCce-EEEEeecccccceEEEEEecCC--ccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-
Confidence            4432 2223344455689999999998  56689999999999999987754431111 111    1122334443322 


Q ss_pred             CCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEE
Q 036510          162 APGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT  241 (288)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~  241 (288)
                                    ..+++|..-|+|++||-..+    ++++++..|..-|.++.-.++    +.++.+++-|+.|..+.
T Consensus       216 --------------~tI~sgDS~G~V~FWd~~~g----TLiqS~~~h~adVl~Lav~~~----~d~vfsaGvd~~ii~~~  273 (691)
T KOG2048|consen  216 --------------STIASGDSAGTVTFWDSIFG----TLIQSHSCHDADVLALAVADN----EDRVFSAGVDPKIIQYS  273 (691)
T ss_pred             --------------CcEEEecCCceEEEEcccCc----chhhhhhhhhcceeEEEEcCC----CCeEEEccCCCceEEEE
Confidence                          56999999999999998877    567788889999999999987    36899999999999998


Q ss_pred             eecCCCcccceEe-eccccCeEEEEeecCCCEEEEEeCCCcEEE
Q 036510          242 VAREGDQWEGKVL-HDFKTPVYRVSWSLTGNILAVADGNNNVTL  284 (288)
Q Consensus       242 ~~~~~~~~~~~~~-~~~~~~i~~~~~spdg~~l~s~~~d~~v~~  284 (288)
                      ....+..+....- ..|...|.+++..++  .+.+|+.|.++.+
T Consensus       274 ~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i  315 (691)
T KOG2048|consen  274 LTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI  315 (691)
T ss_pred             ecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence            7654322222111 123345778887777  8888888887754

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.81  E-value=3.1e-17  Score=147.94  Aligned_cols=153  Identities=20%  Similarity=0.266  Sum_probs=118.9

Q ss_pred             ceEEEEEcCCC--CEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510           13 TVHDVAMDYYG--KRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN   90 (288)
Q Consensus        13 ~v~~~~~s~~g--~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~   90 (288)
                      .|+++. .|..  +.++-|+.+|.++||++.  +++.++++.++...|+++.-+|-  -++++.|-.+|+|.|++++..+
T Consensus       161 ~Ital~-HP~TYLNKIvvGs~~G~lql~Nvr--t~K~v~~f~~~~s~IT~ieqsPa--LDVVaiG~~~G~ViifNlK~dk  235 (910)
T KOG1539|consen  161 FITALL-HPSTYLNKIVVGSSQGRLQLWNVR--TGKVVYTFQEFFSRITAIEQSPA--LDVVAIGLENGTVIIFNLKFDK  235 (910)
T ss_pred             ceeeEe-cchhheeeEEEeecCCcEEEEEec--cCcEEEEecccccceeEeccCCc--ceEEEEeccCceEEEEEcccCc
Confidence            366653 4432  568889999999999995  45789999999999999997754  5699999999999999998765


Q ss_pred             ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceeccc
Q 036510           91 EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG  170 (288)
Q Consensus        91 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~  170 (288)
                         ...+++.-.++|++++|..|+ .-++++|+..|.+.+||+......  .....+|...+....|.|..         
T Consensus       236 ---il~sFk~d~g~VtslSFrtDG-~p~las~~~~G~m~~wDLe~kkl~--~v~~nah~~sv~~~~fl~~e---------  300 (910)
T KOG1539|consen  236 ---ILMSFKQDWGRVTSLSFRTDG-NPLLASGRSNGDMAFWDLEKKKLI--NVTRNAHYGSVTGATFLPGE---------  300 (910)
T ss_pred             ---EEEEEEccccceeEEEeccCC-CeeEEeccCCceEEEEEcCCCeee--eeeeccccCCcccceecCCC---------
Confidence               334455335899999999886 346889988999999999765322  23445787788888888776         


Q ss_pred             ccCCCceeEEeecCCcEEEE
Q 036510          171 FLDPVQKLCSGGCDNTVKVW  190 (288)
Q Consensus       171 ~~~~~~~l~s~~~d~~i~iw  190 (288)
                           -.++|.+.|+++++|
T Consensus       301 -----pVl~ta~~DnSlk~~  315 (910)
T KOG1539|consen  301 -----PVLVTAGADNSLKVW  315 (910)
T ss_pred             -----ceEeeccCCCceeEE
Confidence                 467888888887766

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.80  E-value=3.1e-17  Score=137.18  Aligned_cols=262  Identities=23%  Similarity=0.357  Sum_probs=166.2

Q ss_pred             cccceEEEEEcCCCC-EEEEeeCCCcEEEEEeCCC-------CceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcE
Q 036510           10 HEDTVHDVAMDYYGK-RLATASSDYSIKIIGVGNN-------TSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTV   81 (288)
Q Consensus        10 h~~~v~~~~~s~~g~-~l~s~~~d~~i~lwd~~~~-------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v   81 (288)
                      -..+|+++.|.+.+. .|+||+.|..|+||.+...       ..+.+..|..|+.+|+.+.|++.  |++|+||+++|.|
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~--gelLASg~D~g~v   89 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD--GELLASGGDGGEV   89 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC--cCeeeecCCCceE
Confidence            357889999998764 9999999999999987421       23446778899999999999864  8999999999999


Q ss_pred             EEeecC--------C-----CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccC
Q 036510           82 IIWKEG--------N-----SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAH  148 (288)
Q Consensus        82 ~iwd~~--------~-----~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~  148 (288)
                      .+|-..        .     ...|...+.+.+|...|.-++|+|+  +.++++|+-|+.+++||++.++   .......|
T Consensus        90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d--~~~l~s~s~dns~~l~Dv~~G~---l~~~~~dh  164 (434)
T KOG1009|consen   90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD--SNFLVSGSVDNSVRLWDVHAGQ---LLAILDDH  164 (434)
T ss_pred             EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC--CceeeeeeccceEEEEEeccce---eEeecccc
Confidence            999765        1     2235555667789999999999998  6789999999999999998653   22233334


Q ss_pred             CCCeeEEEeCCCCCC--------------------------------------Cce-------------ecccccCCCce
Q 036510          149 PVGVTSVSWAPSTAP--------------------------------------GAL-------------VGSGFLDPVQK  177 (288)
Q Consensus       149 ~~~v~~i~~~p~~~~--------------------------------------~~~-------------~~~~~~~~~~~  177 (288)
                      ..-+.-++|.|-..-                                      +..             .-..|..++.+
T Consensus       165 ~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~l  244 (434)
T KOG1009|consen  165 EHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSL  244 (434)
T ss_pred             ccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcE
Confidence            333444444443210                                      000             00011233445


Q ss_pred             eEEeec----CCcE-----EEEEEeCCceeeeeeeccccCCcceEEEEecCCC-------------CCCCcEEEEEeCCC
Q 036510          178 LCSGGC----DNTV-----KVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNL-------------GLPKSTIASASEDG  235 (288)
Q Consensus       178 l~s~~~----d~~i-----~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~-------------~~~~~~l~s~s~D~  235 (288)
                      |++...    .+.+     .+++-..   .-.....+.....++..|.|+|-.             .++-.++.+...-+
T Consensus       245 lvtPag~~~~g~~~~~n~tYvfsrk~---l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~  321 (434)
T KOG1009|consen  245 LVTPAGLFKVGGGVFRNTSYVFSRKD---LKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN  321 (434)
T ss_pred             EEcccceeeeCCceeeceeEeecccc---ccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc
Confidence            554421    1111     1111000   001111223344456777777721             01113344445556


Q ss_pred             cEEEEEeecCCCcccceEeec-cccCeEEEEeecCCCEEEEEeCCCcEEE
Q 036510          236 KVIIWTVAREGDQWEGKVLHD-FKTPVYRVSWSLTGNILAVADGNNNVTL  284 (288)
Q Consensus       236 ~i~iw~~~~~~~~~~~~~~~~-~~~~i~~~~~spdg~~l~s~~~d~~v~~  284 (288)
                      .+.+||.+.....   ..+.. |-..|+.++|++||..|+..|.||-.-+
T Consensus       322 svyvydtq~~~P~---~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~  368 (434)
T KOG1009|consen  322 SVYVYDTQTLEPL---AVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL  368 (434)
T ss_pred             eEEEeccccccce---EEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence            8999997753211   11111 3468999999999999999999996544

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.80  E-value=5.2e-18  Score=136.34  Aligned_cols=230  Identities=20%  Similarity=0.340  Sum_probs=159.6

Q ss_pred             CCCcEEEEEeCCCCce-eeEEEeccccCeEEEEecCCCCCCEEEEeeCC-------CcEEEeecCCCC------ceEEeE
Q 036510           31 SDYSIKIIGVGNNTSQ-HLAKLSGHKGAVWEVAWAHPKFGSILASCSFD-------GTVIIWKEGNSN------EWIKDH   96 (288)
Q Consensus        31 ~d~~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-------~~v~iwd~~~~~------~~~~~~   96 (288)
                      .|+.|.+-.++.+... ....+.-|.+.||.|+-+ |.+..+|+|+-++       ..+.||.+....      ++.++.
T Consensus        38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~-P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~  116 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASS-PFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVA  116 (370)
T ss_pred             CcceeEEEEecCccchhhhhhhhcCCcceehhhcC-CCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhh
Confidence            3566777766543222 234566688999999965 4567888887653       346789864221      122222


Q ss_pred             Eee-cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEe---eccCCCCeeEEEeCCCCCCCceeccccc
Q 036510           97 VFE-DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRI---DQAHPVGVTSVSWAPSTAPGALVGSGFL  172 (288)
Q Consensus        97 ~~~-~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~v~~i~~~p~~~~~~~~~~~~~  172 (288)
                      .+. .+.+.|.|+.|.|+  +..+++.. |+.|.+|++.+.........   ...|....++-.|+|...          
T Consensus       117 ~Ldteavg~i~cvew~Pn--s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHd----------  183 (370)
T KOG1007|consen  117 SLDTEAVGKINCVEWEPN--SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHD----------  183 (370)
T ss_pred             cCCHHHhCceeeEEEcCC--CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCc----------
Confidence            333 46679999999996  45566664 89999999987543211111   112444567778998531          


Q ss_pred             CCCceeEEeecCCcEEEEEEeCCceeeeeeecc-ccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccc
Q 036510          173 DPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPAL-QMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEG  251 (288)
Q Consensus       173 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~  251 (288)
                        ++.+++. .|+++..||+++-    ++...+ ..|...|++++|+|+.   ..+||++++|+.|||||.+..+.+  .
T Consensus       184 --gnqv~tt-~d~tl~~~D~RT~----~~~~sI~dAHgq~vrdlDfNpnk---q~~lvt~gDdgyvriWD~R~tk~p--v  251 (370)
T KOG1007|consen  184 --GNQVATT-SDSTLQFWDLRTM----KKNNSIEDAHGQRVRDLDFNPNK---QHILVTCGDDGYVRIWDTRKTKFP--V  251 (370)
T ss_pred             --cceEEEe-CCCcEEEEEccch----hhhcchhhhhcceeeeccCCCCc---eEEEEEcCCCccEEEEeccCCCcc--c
Confidence              2455554 4899999999863    222222 6788899999999986   578999999999999999875432  3


Q ss_pred             eEeeccccCeEEEEeecC-CCEEEEEeCCCcEEEeE
Q 036510          252 KVLHDFKTPVYRVSWSLT-GNILAVADGNNNVTLWE  286 (288)
Q Consensus       252 ~~~~~~~~~i~~~~~spd-g~~l~s~~~d~~v~~w~  286 (288)
                      ..+.+|.-+|.++-|+|- .++|++|++|..|.||-
T Consensus       252 ~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsc  287 (370)
T KOG1007|consen  252 QELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSC  287 (370)
T ss_pred             cccCCCceEEEEEEecCccceEEEecCCCceeEEEe
Confidence            455777889999999995 68899999999999985

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.80  E-value=5.5e-18  Score=141.26  Aligned_cols=208  Identities=17%  Similarity=0.271  Sum_probs=150.8

Q ss_pred             EeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCc----eEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCC
Q 036510           51 LSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNE----WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDG  126 (288)
Q Consensus        51 ~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~  126 (288)
                      ..||+++|..+.|.| .+...+||||.|.+|.||++-....    ...+..+.+|...|.-+.|||.. ..+|++++.|+
T Consensus        77 v~GHt~~vLDi~w~P-fnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA-~NVLlsag~Dn  154 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCP-FNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTA-PNVLLSAGSDN  154 (472)
T ss_pred             ccCccccccccccCc-cCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccc-hhhHhhccCCc
Confidence            468999999999985 3568999999999999999743321    12455688999999999999986 45678888999


Q ss_pred             cEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccc
Q 036510          127 NISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQ  206 (288)
Q Consensus       127 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  206 (288)
                      +|.+|+..++..+-  .  -.|++-|.+++|+.++              ++|+|...|+.|||||.+++.    .+.+-.
T Consensus       155 ~v~iWnv~tgeali--~--l~hpd~i~S~sfn~dG--------------s~l~TtckDKkvRv~dpr~~~----~v~e~~  212 (472)
T KOG0303|consen  155 TVSIWNVGTGEALI--T--LDHPDMVYSMSFNRDG--------------SLLCTTCKDKKVRVIDPRRGT----VVSEGV  212 (472)
T ss_pred             eEEEEeccCCceee--e--cCCCCeEEEEEeccCC--------------ceeeeecccceeEEEcCCCCc----Eeeecc
Confidence            99999998875432  2  2399999999999987              789999999999999999873    344434


Q ss_pred             cCCcc-eEEEEecCCCCCCCcEEEEE---eCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEe-CCCc
Q 036510          207 MHTDW-VRDVAWAPNLGLPKSTIASA---SEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVAD-GNNN  281 (288)
Q Consensus       207 ~h~~~-V~~v~~sp~~~~~~~~l~s~---s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~-~d~~  281 (288)
                      +|.+. -..+.|-.++    ..+.||   .++..+-+||......+.....+.. ++.|.---|.||.++++.++ +|+.
T Consensus       213 ~heG~k~~Raifl~~g----~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~  287 (472)
T KOG0303|consen  213 AHEGAKPARAIFLASG----KIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSS  287 (472)
T ss_pred             cccCCCcceeEEeccC----ceeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcc
Confidence            45441 1233454443    334444   2477899999875433321122211 34566667889988876554 7999


Q ss_pred             EEEeEc
Q 036510          282 VTLWEE  287 (288)
Q Consensus       282 v~~w~~  287 (288)
                      ||.|.+
T Consensus       288 IRYyEi  293 (472)
T KOG0303|consen  288 IRYFEI  293 (472)
T ss_pred             eEEEEe
Confidence            999874

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.79  E-value=8.7e-16  Score=133.31  Aligned_cols=251  Identities=16%  Similarity=0.246  Sum_probs=154.4

Q ss_pred             cceEEEEEcCCCCEEEEee-CCCcEEEEEeCC-CCceeeEEEeccccCeEEEEecCCCCCCEEEEee-CCCcEEEeecCC
Q 036510           12 DTVHDVAMDYYGKRLATAS-SDYSIKIIGVGN-NTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCS-FDGTVIIWKEGN   88 (288)
Q Consensus        12 ~~v~~~~~s~~g~~l~s~~-~d~~i~lwd~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~d~~v~iwd~~~   88 (288)
                      .....+.++|++++|+.++ .++.|.+|+++. +....+.... ..+....++++++  +++|++++ .++.|.+|++..
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~--g~~l~v~~~~~~~v~v~~~~~  111 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQ--GRFLFSASYNANCVSVSPLDK  111 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCC--CCEEEEEEcCCCeEEEEEECC
Confidence            4566788999999887665 478899999862 2222222222 2234568999864  67666655 589999999853


Q ss_pred             CCce-EEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeE---EeeccCCCCeeEEEeCCCCCCC
Q 036510           89 SNEW-IKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTS---RIDQAHPVGVTSVSWAPSTAPG  164 (288)
Q Consensus        89 ~~~~-~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~---~~~~~~~~~v~~i~~~p~~~~~  164 (288)
                      .+.. .....+. +.....++.++|++ ..++++...++.|.+||+...+.+...   ............+.|+|++   
T Consensus       112 ~g~~~~~~~~~~-~~~~~~~~~~~p~g-~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg---  186 (330)
T PRK11028        112 DGIPVAPIQIIE-GLEGCHSANIDPDN-RTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQ---  186 (330)
T ss_pred             CCCCCCceeecc-CCCcccEeEeCCCC-CEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCC---
Confidence            2211 1122222 22346778899974 345566677899999999764332110   0000112345678899887   


Q ss_pred             ceecccccCCCceeEEee-cCCcEEEEEEeCCceeeeeeecccc------CCcceEEEEecCCCCCCCcEEEEEe-CCCc
Q 036510          165 ALVGSGFLDPVQKLCSGG-CDNTVKVWKLYNGIWKMDCFPALQM------HTDWVRDVAWAPNLGLPKSTIASAS-EDGK  236 (288)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~------h~~~V~~v~~sp~~~~~~~~l~s~s-~D~~  236 (288)
                                 +++++.. .+++|.+||+..+...++.+..+..      +..+...+.|+|++    +++.++. .++.
T Consensus       187 -----------~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg----~~lyv~~~~~~~  251 (330)
T PRK11028        187 -----------QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG----RHLYACDRTASL  251 (330)
T ss_pred             -----------CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC----CEEEEecCCCCe
Confidence                       5555444 4899999999742112223333221      12234468899984    5566664 4789


Q ss_pred             EEEEEeecCCCcccceEeec--cccCeEEEEeecCCCEEEEEeC-CCcEEEeEc
Q 036510          237 VIIWTVAREGDQWEGKVLHD--FKTPVYRVSWSLTGNILAVADG-NNNVTLWEE  287 (288)
Q Consensus       237 i~iw~~~~~~~~~~~~~~~~--~~~~i~~~~~spdg~~l~s~~~-d~~v~~w~~  287 (288)
                      |.+|++.......  +.+..  .......+.|+|||++|+++.. +++|.+|++
T Consensus       252 I~v~~i~~~~~~~--~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~  303 (330)
T PRK11028        252 ISVFSVSEDGSVL--SFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEI  303 (330)
T ss_pred             EEEEEEeCCCCeE--EEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence            9999997543211  11111  1223457899999999998875 899999974

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=6.9e-18  Score=138.31  Aligned_cols=240  Identities=19%  Similarity=0.321  Sum_probs=168.9

Q ss_pred             CEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCC-
Q 036510           24 KRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHK-  102 (288)
Q Consensus        24 ~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~-  102 (288)
                      +.+|++-..++|+|||..  ++..+..+.+|...++.++|.....+..+.+|+.||+|++||++...+. .+..+..+. 
T Consensus        41 ~~vav~lSngsv~lyd~~--tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~-a~~~~~~~~~  117 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKG--TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES-ARISWTQQSG  117 (376)
T ss_pred             eeEEEEecCCeEEEEecc--chhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh-hheeccCCCC
Confidence            568888889999999974  3567888999999999999986445789999999999999999876543 223344454 


Q ss_pred             CceeEEEeccCCCCeEEEEEe----CCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCcee
Q 036510          103 SSVNSIDWAPHELGLCLACGS----SDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKL  178 (288)
Q Consensus       103 ~~v~~l~~~p~~~~~~l~sg~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l  178 (288)
                      .+-.|++.+-.  ..++++|.    .+-.+.+||.|..++. .....+.|...|+++.|.|..+             ++|
T Consensus       118 ~~f~~ld~nck--~~ii~~GtE~~~s~A~v~lwDvR~~qq~-l~~~~eSH~DDVT~lrFHP~~p-------------nlL  181 (376)
T KOG1188|consen  118 TPFICLDLNCK--KNIIACGTELTRSDASVVLWDVRSEQQL-LRQLNESHNDDVTQLRFHPSDP-------------NLL  181 (376)
T ss_pred             CcceEeeccCc--CCeEEeccccccCceEEEEEEeccccch-hhhhhhhccCcceeEEecCCCC-------------CeE
Confidence            45667765432  45566663    3457899999976542 2234467999999999999986             889


Q ss_pred             EEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCc----------
Q 036510          179 CSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ----------  248 (288)
Q Consensus       179 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~----------  248 (288)
                      +|||.||.|.|+|+.....+ +-+....-|...|.++.|...+ |  +.|-+-+-+.+..+|+++.....          
T Consensus       182 lSGSvDGLvnlfD~~~d~Ee-DaL~~viN~~sSI~~igw~~~~-y--krI~clTH~Etf~~~ele~~~~~~~~~~~~~~~  257 (376)
T KOG1188|consen  182 LSGSVDGLVNLFDTKKDNEE-DALLHVINHGSSIHLIGWLSKK-Y--KRIMCLTHMETFAIYELEDGSEETWLENPDVSA  257 (376)
T ss_pred             EeecccceEEeeecCCCcch-hhHHHhhcccceeeeeeeecCC-c--ceEEEEEccCceeEEEccCCChhhcccCccchh
Confidence            99999999999999754211 1122223466668888887752 2  34667777788888887653200          


Q ss_pred             ------------------------------------------------ccceEeec-cccCeEEEEeecCCCEEEEEeCC
Q 036510          249 ------------------------------------------------WEGKVLHD-FKTPVYRVSWSLTGNILAVADGN  279 (288)
Q Consensus       249 ------------------------------------------------~~~~~~~~-~~~~i~~~~~spdg~~l~s~~~d  279 (288)
                                                                      .....+++ +..-|.++.|...+..+.+|++|
T Consensus       258 ~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGED  337 (376)
T KOG1188|consen  258 DDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGED  337 (376)
T ss_pred             hhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCC
Confidence                                                            00000011 11235567788888999999999


Q ss_pred             CcEEEeE
Q 036510          280 NNVTLWE  286 (288)
Q Consensus       280 ~~v~~w~  286 (288)
                      |.+++|+
T Consensus       338 G~l~~Wk  344 (376)
T KOG1188|consen  338 GLLQAWK  344 (376)
T ss_pred             ceEEEEe
Confidence            9999998

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.78  E-value=2.3e-17  Score=132.68  Aligned_cols=203  Identities=16%  Similarity=0.237  Sum_probs=147.0

Q ss_pred             ccccceEEEEEcC-CCCEEEEeeCCCcEEEEEeCCC-CceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510            9 GHEDTVHDVAMDY-YGKRLATASSDYSIKIIGVGNN-TSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE   86 (288)
Q Consensus         9 ~h~~~v~~~~~s~-~g~~l~s~~~d~~i~lwd~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~   86 (288)
                      .+-.++++..|+. +-++|.++|-|-|..|||+..+ .+...-+|-+|...|+.++|... .-++|+|+|+||+||++|+
T Consensus       148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~-s~~~FASvgaDGSvRmFDL  226 (364)
T KOG0290|consen  148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKG-SRDVFASVGADGSVRMFDL  226 (364)
T ss_pred             ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccC-ccceEEEecCCCcEEEEEe
Confidence            4556788777775 5689999999999999999654 33446678899999999999863 4679999999999999999


Q ss_pred             CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEE-eCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           87 GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACG-SSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      +...-...+..-+....+...++|++.+. .++|+- -..+.|.|.|+|...  .+...++.|...|..|+|.|...   
T Consensus       227 R~leHSTIIYE~p~~~~pLlRLswnkqDp-nymATf~~dS~~V~iLDiR~P~--tpva~L~~H~a~VNgIaWaPhS~---  300 (364)
T KOG0290|consen  227 RSLEHSTIIYEDPSPSTPLLRLSWNKQDP-NYMATFAMDSNKVVILDIRVPC--TPVARLRNHQASVNGIAWAPHSS---  300 (364)
T ss_pred             cccccceEEecCCCCCCcceeeccCcCCc-hHHhhhhcCCceEEEEEecCCC--cceehhhcCcccccceEecCCCC---
Confidence            87542111111112245788999998764 445544 455689999998753  45566789999999999999874   


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCCce-e-eeeeeccccCCcceEEEEecCCCCCCCcEEEEEe
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIW-K-MDCFPALQMHTDWVRDVAWAPNLGLPKSTIASAS  232 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~-~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s  232 (288)
                                ..+||+|.|...-|||+..-.. . ...+-... -...|+.++|+|..   +..|+.+.
T Consensus       301 ----------~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~---~Dwiai~~  355 (364)
T KOG0290|consen  301 ----------SHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQ---PDWIAICF  355 (364)
T ss_pred             ----------ceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccC---CCEEEEEe
Confidence                      7899999999999999965321 0 01111122 33469999999864   45565444

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.78  E-value=1.9e-15  Score=132.80  Aligned_cols=242  Identities=28%  Similarity=0.450  Sum_probs=174.1

Q ss_pred             ceEEEEE-cCCCC-EEEEeeC-CCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeC-CCcEEEeecCC
Q 036510           13 TVHDVAM-DYYGK-RLATASS-DYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSF-DGTVIIWKEGN   88 (288)
Q Consensus        13 ~v~~~~~-s~~g~-~l~s~~~-d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-d~~v~iwd~~~   88 (288)
                      .+..+.+ ++++. +++..+. |+.+++|+... .......+..|...|..+.|+++  +..+++++. |+.+++|+...
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  187 (466)
T COG2319         111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLST-PGKLIRTLEGHSESVTSLAFSPD--GKLLASGSSLDGTIKLWDLRT  187 (466)
T ss_pred             ceeeEEEECCCcceEEeccCCCCccEEEEEecC-CCeEEEEEecCcccEEEEEECCC--CCEEEecCCCCCceEEEEcCC
Confidence            5666666 77777 5555444 99999999854 13567788999999999999865  668888885 99999999876


Q ss_pred             CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEE-eeccCCCCeeEEEeCCCCCCCcee
Q 036510           89 SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSR-IDQAHPVGVTSVSWAPSTAPGALV  167 (288)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~v~~i~~~p~~~~~~~~  167 (288)
                      ..   ....+..|...|.+++|+|+.. .++++++.|+.|++||.+.+..   .. ....|.... ...|+|++      
T Consensus       188 ~~---~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~-~~~~~~~~------  253 (466)
T COG2319         188 GK---PLSTLAGHTDPVSSLAFSPDGG-LLIASGSSDGTIRLWDLSTGKL---LRSTLSGHSDSV-VSSFSPDG------  253 (466)
T ss_pred             Cc---eEEeeccCCCceEEEEEcCCcc-eEEEEecCCCcEEEEECCCCcE---EeeecCCCCcce-eEeECCCC------
Confidence            33   3455667999999999998742 3566669999999998763321   22 355666554 33788775      


Q ss_pred             cccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCC
Q 036510          168 GSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGD  247 (288)
Q Consensus       168 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~  247 (288)
                              .++++++.|+.+++||+.....   ....+.+|...|.++.|+|+.    ..+++++.|+.+++|+......
T Consensus       254 --------~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~  318 (466)
T COG2319         254 --------SLLASGSSDGTIRLWDLRSSSS---LLRTLSGHSSSVLSVAFSPDG----KLLASGSSDGTVRLWDLETGKL  318 (466)
T ss_pred             --------CEEEEecCCCcEEEeeecCCCc---EEEEEecCCccEEEEEECCCC----CEEEEeeCCCcEEEEEcCCCce
Confidence                    5677999999999999986532   122226788899999999953    5677788898999997765422


Q ss_pred             cccceEeeccccCeEEEEeecCCCEEEEE-eCCCcEEEeEc
Q 036510          248 QWEGKVLHDFKTPVYRVSWSLTGNILAVA-DGNNNVTLWEE  287 (288)
Q Consensus       248 ~~~~~~~~~~~~~i~~~~~spdg~~l~s~-~~d~~v~~w~~  287 (288)
                      ..... ...+.+.+..+.|++++..++.+ ..|+.+++|+.
T Consensus       319 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  358 (466)
T COG2319         319 LSSLT-LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL  358 (466)
T ss_pred             EEEee-ecccCCceEEEEECCCCCEEEEeecCCCcEEeeec
Confidence            11111 12444568889994444566666 68889999985

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.78  E-value=1e-16  Score=130.58  Aligned_cols=213  Identities=22%  Similarity=0.387  Sum_probs=172.4

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCC-ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNT-SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS   89 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~   89 (288)
                      -.+|++-+|++|++.+|.+-....+.||...+.. .+..+++..|...|+.+.|++.  .+.|++|+.|....+|....+
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~--snrIvtcs~drnayVw~~~~~   87 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPK--SNRIVTCSHDRNAYVWTQPSG   87 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCC--CCceeEccCCCCccccccCCC
Confidence            4789999999999999999999999999987655 7889999999999999999864  789999999999999998777


Q ss_pred             CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCee-eEEeeccCCCCeeEEEeCCCCCCCceec
Q 036510           90 NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWD-TSRIDQAHPVGVTSVSWAPSTAPGALVG  168 (288)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~v~~i~~~p~~~~~~~~~  168 (288)
                      .+|.+...+..+...++++.|+|.+  ..+|+|+....|.+|-+...+.|= ..++.+.+...|.+++|.|+.       
T Consensus        88 ~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn-------  158 (361)
T KOG1523|consen   88 GTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN-------  158 (361)
T ss_pred             CeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc-------
Confidence            7887777777889999999999984  458899999999999887665552 222334566789999999987       


Q ss_pred             ccccCCCceeEEeecCCcEEEEEEeC-----C----ceeee-----eeeccccCCcceEEEEecCCCCCCCcEEEEEeCC
Q 036510          169 SGFLDPVQKLCSGGCDNTVKVWKLYN-----G----IWKMD-----CFPALQMHTDWVRDVAWAPNLGLPKSTIASASED  234 (288)
Q Consensus       169 ~~~~~~~~~l~s~~~d~~i~iwd~~~-----~----~~~~~-----~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D  234 (288)
                             -+|++|+.|+.++++...-     .    .+..+     ++.++....++|..|.|+|+    +..|+=.+-|
T Consensus       159 -------VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s----G~~lawv~Hd  227 (361)
T KOG1523|consen  159 -------VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS----GNRLAWVGHD  227 (361)
T ss_pred             -------ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC----CCEeeEecCC
Confidence                   6789999999999986531     1    11111     12233456678999999997    4789999999


Q ss_pred             CcEEEEEeecC
Q 036510          235 GKVIIWTVARE  245 (288)
Q Consensus       235 ~~i~iw~~~~~  245 (288)
                      .++.+=|....
T Consensus       228 s~v~~~da~~p  238 (361)
T KOG1523|consen  228 STVSFVDAAGP  238 (361)
T ss_pred             CceEEeecCCC
Confidence            99999887654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.77  E-value=2.8e-17  Score=133.99  Aligned_cols=233  Identities=18%  Similarity=0.290  Sum_probs=162.8

Q ss_pred             cCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccC---eEEEEecCCCCCCEEEEeeCCCcEEEeec-CCCCceEEe
Q 036510           20 DYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGA---VWEVAWAHPKFGSILASCSFDGTVIIWKE-GNSNEWIKD   95 (288)
Q Consensus        20 s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~---v~~~~~~~~~~~~~l~s~s~d~~v~iwd~-~~~~~~~~~   95 (288)
                      .|+..++++.+.|.-|++||.-.+..+.......|.+.   ..+++|+|+  |++|.. +....|+++|. +.+......
T Consensus       120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~D--Geqlfa-GykrcirvFdt~RpGr~c~vy  196 (406)
T KOG2919|consen  120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPD--GEQLFA-GYKRCIRVFDTSRPGRDCPVY  196 (406)
T ss_pred             CCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCC--CCeEee-cccceEEEeeccCCCCCCcch
Confidence            46788999999999999999754433333333345544   367999975  777765 56799999998 333221111


Q ss_pred             EEe----ecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccc
Q 036510           96 HVF----EDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGF  171 (288)
Q Consensus        96 ~~~----~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~  171 (288)
                      .++    .+..+-+.|++|+|.. ...++.|+..+++-||.-..++.   ...+.+|..+|+-+.|.+++          
T Consensus       197 ~t~~~~k~gq~giisc~a~sP~~-~~~~a~gsY~q~~giy~~~~~~p---l~llggh~gGvThL~~~edG----------  262 (406)
T KOG2919|consen  197 TTVTKGKFGQKGIISCFAFSPMD-SKTLAVGSYGQRVGIYNDDGRRP---LQLLGGHGGGVTHLQWCEDG----------  262 (406)
T ss_pred             hhhhcccccccceeeeeeccCCC-CcceeeecccceeeeEecCCCCc---eeeecccCCCeeeEEeccCc----------
Confidence            111    1235678999999986 45789999999999987655433   34456899999999999998          


Q ss_pred             cCCCceeEEeec-CCcEEEEEEeCCceeeeeeeccccCCc-ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcc
Q 036510          172 LDPVQKLCSGGC-DNTVKVWKLYNGIWKMDCFPALQMHTD-WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQW  249 (288)
Q Consensus       172 ~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~h~~-~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~  249 (288)
                          +.|.+|.. |..|-.||++...   ..+..|..|.. .=..|.|.-+.  .+..||+|+.||.|++||++..... 
T Consensus       263 ----n~lfsGaRk~dkIl~WDiR~~~---~pv~~L~rhv~~TNQRI~FDld~--~~~~LasG~tdG~V~vwdlk~~gn~-  332 (406)
T KOG2919|consen  263 ----NKLFSGARKDDKILCWDIRYSR---DPVYALERHVGDTNQRILFDLDP--KGEILASGDTDGSVRVWDLKDLGNE-  332 (406)
T ss_pred             ----CeecccccCCCeEEEEeehhcc---chhhhhhhhccCccceEEEecCC--CCceeeccCCCccEEEEecCCCCCc-
Confidence                55666654 6679999998742   45666776755 33445554432  3578999999999999999864331 


Q ss_pred             cceEeeccccCeEEEEeecCCCEEEEEeCCC
Q 036510          250 EGKVLHDFKTPVYRVSWSLTGNILAVADGNN  280 (288)
Q Consensus       250 ~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~  280 (288)
                       ....-.+...++.++++|-=.++|+++...
T Consensus       333 -~sv~~~~sd~vNgvslnP~mpilatssGqr  362 (406)
T KOG2919|consen  333 -VSVTGNYSDTVNGVSLNPIMPILATSSGQR  362 (406)
T ss_pred             -ccccccccccccceecCcccceeeeccCce
Confidence             122223456789999999999999987643

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.77  E-value=4e-17  Score=136.22  Aligned_cols=210  Identities=20%  Similarity=0.273  Sum_probs=147.6

Q ss_pred             ccccccceEEEEEcCC-CCEEEEeeCCCcEEEEEeCCC-----CceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCc
Q 036510            7 ETGHEDTVHDVAMDYY-GKRLATASSDYSIKIIGVGNN-----TSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGT   80 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~-g~~l~s~~~d~~i~lwd~~~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~   80 (288)
                      ..||+++|..+.|+|- ..-|||||.|.+|.||.+..+     ..+.+..|.||...|.-++|.+ .-.++|+|++.|.+
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHP-tA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHP-TAPNVLLSAGSDNT  155 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecc-cchhhHhhccCCce
Confidence            4599999999999995 477999999999999998532     1355788999999999999954 45789999999999


Q ss_pred             EEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCC-eeEEEeCC
Q 036510           81 VIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVG-VTSVSWAP  159 (288)
Q Consensus        81 v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-v~~i~~~p  159 (288)
                      |.||++.++...   .++. |.+-|++++|+.+  +.++++.+.|++|||||.|++.....   ..+|.+. -....|-.
T Consensus       156 v~iWnv~tgeal---i~l~-hpd~i~S~sfn~d--Gs~l~TtckDKkvRv~dpr~~~~v~e---~~~heG~k~~Raifl~  226 (472)
T KOG0303|consen  156 VSIWNVGTGEAL---ITLD-HPDMVYSMSFNRD--GSLLCTTCKDKKVRVIDPRRGTVVSE---GVAHEGAKPARAIFLA  226 (472)
T ss_pred             EEEEeccCCcee---eecC-CCCeEEEEEeccC--CceeeeecccceeEEEcCCCCcEeee---cccccCCCcceeEEec
Confidence            999999887643   2344 9999999999988  67899999999999999998643222   2345321 22344443


Q ss_pred             CCCCCceecccccCCCceeEEe---ecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCc
Q 036510          160 STAPGALVGSGFLDPVQKLCSG---GCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGK  236 (288)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~l~s~---~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~  236 (288)
                      ++              .++-||   ..++.+-|||...-... -...++.... .|.==-|.|+.+   -.-+.|-.|+.
T Consensus       227 ~g--------------~i~tTGfsr~seRq~aLwdp~nl~eP-~~~~elDtSn-Gvl~PFyD~dt~---ivYl~GKGD~~  287 (472)
T KOG0303|consen  227 SG--------------KIFTTGFSRMSERQIALWDPNNLEEP-IALQELDTSN-GVLLPFYDPDTS---IVYLCGKGDSS  287 (472)
T ss_pred             cC--------------ceeeeccccccccceeccCcccccCc-ceeEEeccCC-ceEEeeecCCCC---EEEEEecCCcc
Confidence            33              323333   34778999997542111 1122333322 243334555531   13356678999


Q ss_pred             EEEEEeecC
Q 036510          237 VIIWTVARE  245 (288)
Q Consensus       237 i~iw~~~~~  245 (288)
                      ||-|.++..
T Consensus       288 IRYyEit~d  296 (472)
T KOG0303|consen  288 IRYFEITNE  296 (472)
T ss_pred             eEEEEecCC
Confidence            999998753

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=1.3e-17  Score=144.25  Aligned_cols=218  Identities=22%  Similarity=0.296  Sum_probs=157.0

Q ss_pred             EEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEe-ecCCCceeEEEeccCCCCeEEEEEeCCCc
Q 036510           49 AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVF-EDHKSSVNSIDWAPHELGLCLACGSSDGN  127 (288)
Q Consensus        49 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~~l~sg~~d~~  127 (288)
                      ..|.||++-|+++.|+.+  |.+|+|||+|-.+.|||...-+   +.+.+ .+|...|.|+.|-|.....++++|..|..
T Consensus        44 ~eL~GH~GCVN~LeWn~d--G~lL~SGSDD~r~ivWd~~~~K---llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~  118 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNAD--GELLASGSDDTRLIVWDPFEYK---LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL  118 (758)
T ss_pred             hhhccccceecceeecCC--CCEEeecCCcceEEeecchhcc---eeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence            447899999999999864  9999999999999999986433   44444 58999999999999877889999999999


Q ss_pred             EEEEeecCC--CCe-----eeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceee-
Q 036510          128 ISVFTARAD--GGW-----DTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKM-  199 (288)
Q Consensus       128 i~i~d~~~~--~~~-----~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-  199 (288)
                      |++||+...  +..     -+......|...|..|+-.|+++             +.+.++++||+|+.+|+++..... 
T Consensus       119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P-------------htfwsasEDGtirQyDiREph~c~p  185 (758)
T KOG1310|consen  119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP-------------HTFWSASEDGTIRQYDIREPHVCNP  185 (758)
T ss_pred             EEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCC-------------ceEEEecCCcceeeecccCCccCCc
Confidence            999999741  111     11223456888899998888875             789999999999999998742110 


Q ss_pred             --eeeecc---ccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCc----------------ccceEeeccc
Q 036510          200 --DCFPAL---QMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ----------------WEGKVLHDFK  258 (288)
Q Consensus       200 --~~~~~~---~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~----------------~~~~~~~~~~  258 (288)
                        .+...+   ....-...|+..+|..   +.+||.|+.|--.++||.+....+                +.....-+|-
T Consensus       186 ~~~~~~~l~ny~~~lielk~ltisp~r---p~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl  262 (758)
T KOG1310|consen  186 DEDCPSILVNYNPQLIELKCLTISPSR---PYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL  262 (758)
T ss_pred             cccccHHHHHhchhhheeeeeeecCCC---CceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc
Confidence              011111   1111235788889975   679999999999999995432110                0000001111


Q ss_pred             -----------cCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          259 -----------TPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       259 -----------~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                                 ..++-++|||+|+.|++.=.-..|.++|+
T Consensus       263 kn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdv  302 (758)
T KOG1310|consen  263 KNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDV  302 (758)
T ss_pred             cCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEee
Confidence                       12456799999998888766677888874

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=1.1e-17  Score=144.94  Aligned_cols=250  Identities=19%  Similarity=0.188  Sum_probs=165.6

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeC------CCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCC
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVG------NNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDG   79 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~   79 (288)
                      .+.-|.+.|..+.|.+-..-|++++.|+++++|.+.      +...+++.++.+|.++|-+++.+.  .++.+.+|+.||
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~--n~~~~ysgg~Dg  366 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS--NGEHCYSGGIDG  366 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC--CceEEEeeccCc
Confidence            344688888999999888899999999999999982      123567899999999999999865  489999999999


Q ss_pred             cEEEeecCC------CC-ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCC--
Q 036510           80 TVIIWKEGN------SN-EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV--  150 (288)
Q Consensus        80 ~v~iwd~~~------~~-~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~--  150 (288)
                      +|+.|++-.      .. .......+.+|.+.|+.+++|+.  ...|++++.||++++|....... -.+...+.|..  
T Consensus       367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~--~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl  443 (577)
T KOG0642|consen  367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSST--KDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL  443 (577)
T ss_pred             eeeeeccCCCCCcccccCcchhccceeccccceeeeeeccc--ccceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence            999996531      11 01123456789999999999986  45689999999999998765432 11111122211  


Q ss_pred             CeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeec--cc--cCCcceEEEEecCCCCCCCc
Q 036510          151 GVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPA--LQ--MHTDWVRDVAWAPNLGLPKS  226 (288)
Q Consensus       151 ~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~--~h~~~V~~v~~sp~~~~~~~  226 (288)
                      .+-...+.|..                .++...-+.--+.|+...... ....+  ..  .....++-|.++|..    .
T Consensus       444 svd~~ss~~a~----------------~~~s~~~~~~~~~~~ev~s~~-~~~~s~~~~~~~~~~~in~vVs~~~~----~  502 (577)
T KOG0642|consen  444 SVDRTSSRPAH----------------SLASFRFGYTSIDDMEVVSDL-LIFESSASPGPRRYPQINKVVSHPTA----D  502 (577)
T ss_pred             eEeeccchhHh----------------hhhhcccccccchhhhhhhhe-eeccccCCCcccccCccceEEecCCC----C
Confidence            12222222111                111111111112222221100 00000  00  112346778888874    4


Q ss_pred             EEEEEeCCCcEEEEEeecCCCcccceEeec---cccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          227 TIASASEDGKVIIWTVAREGDQWEGKVLHD---FKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       227 ~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~---~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ...++..|+.|+++|....      .+++.   +...++++++-|+|.+|+++++|+.|++|+.
T Consensus       503 ~~~~~hed~~Ir~~dn~~~------~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl  560 (577)
T KOG0642|consen  503 ITFTAHEDRSIRFFDNKTG------KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL  560 (577)
T ss_pred             eeEecccCCceeccccccc------ccchheeeccceecceeecCCCceEEeecCCceeehhhc
Confidence            6778889999999987643      33332   3356899999999999999999999999984

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.77  E-value=1.3e-17  Score=144.02  Aligned_cols=207  Identities=21%  Similarity=0.320  Sum_probs=150.8

Q ss_pred             CEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCC
Q 036510           24 KRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKS  103 (288)
Q Consensus        24 ~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~  103 (288)
                      ..++-++.||.+.|.+-.   ++.-....+|.+.+.+-+|+++  |.-|++++.||.|+||.- ++-   +..++.....
T Consensus        76 d~~~i~s~DGkf~il~k~---~rVE~sv~AH~~A~~~gRW~~d--GtgLlt~GEDG~iKiWSr-sGM---LRStl~Q~~~  146 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKS---ARVERSISAHAAAISSGRWSPD--GAGLLTAGEDGVIKIWSR-SGM---LRSTVVQNEE  146 (737)
T ss_pred             ceEEEEcCCceEEEeccc---chhhhhhhhhhhhhhhcccCCC--CceeeeecCCceEEEEec-cch---HHHHHhhcCc
Confidence            457788899998887543   2334557899999999999875  899999999999999964 332   3334445667


Q ss_pred             ceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeec
Q 036510          104 SVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC  183 (288)
Q Consensus       104 ~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~  183 (288)
                      +|.|++|.|+.. ..+.+  +.+.+.|=.+..+..   ...-++|.+-|.+++|+|..              ++++|||+
T Consensus       147 ~v~c~~W~p~S~-~vl~c--~g~h~~IKpL~~n~k---~i~WkAHDGiiL~~~W~~~s--------------~lI~sgGE  206 (737)
T KOG1524|consen  147 SIRCARWAPNSN-SIVFC--QGGHISIKPLAANSK---IIRWRAHDGLVLSLSWSTQS--------------NIIASGGE  206 (737)
T ss_pred             eeEEEEECCCCC-ceEEe--cCCeEEEeecccccc---eeEEeccCcEEEEeecCccc--------------cceeecCC
Confidence            899999999853 33443  345677655543322   12235799999999999987              78999999


Q ss_pred             CCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEE
Q 036510          184 DNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYR  263 (288)
Q Consensus       184 d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~  263 (288)
                      |-..|+||-...     .+..-..|..+|++|+|+|+.     .++.+|. +++|+   +           +.--+.|..
T Consensus       207 D~kfKvWD~~G~-----~Lf~S~~~ey~ITSva~npd~-----~~~v~S~-nt~R~---~-----------~p~~GSifn  261 (737)
T KOG1524|consen  207 DFRFKIWDAQGA-----NLFTSAAEEYAITSVAFNPEK-----DYLLWSY-NTARF---S-----------SPRVGSIFN  261 (737)
T ss_pred             ceeEEeecccCc-----ccccCChhccceeeeeecccc-----ceeeeee-eeeee---c-----------CCCccceEE
Confidence            999999997553     233446789999999999973     4555554 34442   1           111257899


Q ss_pred             EEeecCCCEEEEEeCCCcEEE
Q 036510          264 VSWSLTGNILAVADGNNNVTL  284 (288)
Q Consensus       264 ~~~spdg~~l~s~~~d~~v~~  284 (288)
                      ++|||||++++.|.+.|.|.+
T Consensus       262 lsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  262 LSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             EEEcCCCceeeccccCceEEE
Confidence            999999999999999887643

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.76  E-value=3.1e-17  Score=137.19  Aligned_cols=197  Identities=24%  Similarity=0.425  Sum_probs=148.6

Q ss_pred             cCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC---C---ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEE
Q 036510           56 GAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS---N---EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNIS  129 (288)
Q Consensus        56 ~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~---~---~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~  129 (288)
                      .+|..+.|-+. ..+.|+||+.|..|+||-+...   +   .......+..|...|+++.|+|+  +.+||+|+.+|.+.
T Consensus        14 ~pv~s~dfq~n-~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~--gelLASg~D~g~v~   90 (434)
T KOG1009|consen   14 EPVYSVDFQKN-SLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD--GELLASGGDGGEVF   90 (434)
T ss_pred             CceEEEEeccC-cccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC--cCeeeecCCCceEE
Confidence            46788887543 3449999999999999976321   1   22233456789999999999998  78899999999999


Q ss_pred             EEeec--------C-----CCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCc
Q 036510          130 VFTAR--------A-----DGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGI  196 (288)
Q Consensus       130 i~d~~--------~-----~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  196 (288)
                      +|...        +     ...|...+...+|...+..+.|+|++              .++++++.|+++++||+..++
T Consensus        91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~--------------~~l~s~s~dns~~l~Dv~~G~  156 (434)
T KOG1009|consen   91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS--------------NFLVSGSVDNSVRLWDVHAGQ  156 (434)
T ss_pred             EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC--------------ceeeeeeccceEEEEEeccce
Confidence            99765        2     22355556677899999999999997              789999999999999999883


Q ss_pred             eeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccce------------------Eeecc-
Q 036510          197 WKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGK------------------VLHDF-  257 (288)
Q Consensus       197 ~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~------------------~~~~~-  257 (288)
                          ....+.+|..+|.-|+|.|.    .+++++-|.|...+.+.+...+......                  ++++- 
T Consensus       157 ----l~~~~~dh~~yvqgvawDpl----~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeT  228 (434)
T KOG1009|consen  157 ----LLAILDDHEHYVQGVAWDPL----NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDET  228 (434)
T ss_pred             ----eEeeccccccccceeecchh----hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCc
Confidence                55677899999999999996    4789999999988887776532110000                  00110 


Q ss_pred             -ccCeEEEEeecCCCEEEEEe
Q 036510          258 -KTPVYRVSWSLTGNILAVAD  277 (288)
Q Consensus       258 -~~~i~~~~~spdg~~l~s~~  277 (288)
                       ..--.+++|+|||.++++.+
T Consensus       229 lksFFrRlsfTPdG~llvtPa  249 (434)
T KOG1009|consen  229 LKSFFRRLSFTPDGSLLVTPA  249 (434)
T ss_pred             hhhhhhhcccCCCCcEEEccc
Confidence             01134689999999998875

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=1.6e-16  Score=130.43  Aligned_cols=193  Identities=15%  Similarity=0.249  Sum_probs=138.4

Q ss_pred             CEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCC
Q 036510           70 SILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHP  149 (288)
Q Consensus        70 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~  149 (288)
                      ..+|.+-..|+|++||..+++   ....++++...++.++|........+.+|+.||+|++||+|..+..... ....++
T Consensus        41 ~~vav~lSngsv~lyd~~tg~---~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~-~~~~~~  116 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQ---LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARI-SWTQQS  116 (376)
T ss_pred             eeEEEEecCCeEEEEeccchh---hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhe-eccCCC
Confidence            456777778999999988765   3456778888888999866544667899999999999999976543222 222333


Q ss_pred             -CCeeEEEeCCCCCCCceecccccCCCceeEEee----cCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCC
Q 036510          150 -VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGG----CDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLP  224 (288)
Q Consensus       150 -~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~----~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~  224 (288)
                       .+..+++-+-.              .+.++.|.    .|..+.+||++..+..  +..-...|.+-|++|+|+|..   
T Consensus       117 ~~~f~~ld~nck--------------~~ii~~GtE~~~s~A~v~lwDvR~~qq~--l~~~~eSH~DDVT~lrFHP~~---  177 (376)
T KOG1188|consen  117 GTPFICLDLNCK--------------KNIIACGTELTRSDASVVLWDVRSEQQL--LRQLNESHNDDVTQLRFHPSD---  177 (376)
T ss_pred             CCcceEeeccCc--------------CCeEEeccccccCceEEEEEEeccccch--hhhhhhhccCcceeEEecCCC---
Confidence             33444433211              24566553    3667999999986422  122336799999999999985   


Q ss_pred             CcEEEEEeCCCcEEEEEeecCCCcccceEee--ccccCeEEEEeecCC-CEEEEEeCCCcEEEeEc
Q 036510          225 KSTIASASEDGKVIIWTVAREGDQWEGKVLH--DFKTPVYRVSWSLTG-NILAVADGNNNVTLWEE  287 (288)
Q Consensus       225 ~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~--~~~~~i~~~~~spdg-~~l~s~~~d~~v~~w~~  287 (288)
                      +.+|+|||-||.|.+||++...+  +-.+++  .+.+.|..+.|+-++ ++|.+-+...+..+|+.
T Consensus       178 pnlLlSGSvDGLvnlfD~~~d~E--eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~el  241 (376)
T KOG1188|consen  178 PNLLLSGSVDGLVNLFDTKKDNE--EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYEL  241 (376)
T ss_pred             CCeEEeecccceEEeeecCCCcc--hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEc
Confidence            78999999999999999875422  222333  345679999999888 56888899999999985

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.74  E-value=2.2e-15  Score=124.96  Aligned_cols=233  Identities=16%  Similarity=0.237  Sum_probs=157.2

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCc--EEEeecCC
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGT--VIIWKEGN   88 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~--v~iwd~~~   88 (288)
                      ...+....|+.+...|..|+.||. ++|..+.. .+ ......-...|...-|+    ..++|..+.+..  +++.+.+.
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~-~k-~~~~~~~~~~IvEmLFS----SSLvaiV~~~qpr~Lkv~~~Kk   77 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPF-EK-CFSKDTEGVSIVEMLFS----SSLVAIVSIKQPRKLKVVHFKK   77 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCce-eEEecCch-HH-hhcccCCCeEEEEeecc----cceeEEEecCCCceEEEEEccc
Confidence            456777889999988888998885 67766422 12 22222223345556665    346666665554  88888764


Q ss_pred             CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceec
Q 036510           89 SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG  168 (288)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~  168 (288)
                      .. .++...+   ..+|.++.++.+   ++++ + ....|+|||++....++....-..++.++.+++.++..       
T Consensus        78 ~~-~ICe~~f---pt~IL~VrmNr~---RLvV-~-Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n-------  141 (391)
T KOG2110|consen   78 KT-TICEIFF---PTSILAVRMNRK---RLVV-C-LEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNAN-------  141 (391)
T ss_pred             Cc-eEEEEec---CCceEEEEEccc---eEEE-E-EcccEEEEecccceeehhhhccCCCccceEeeccCCCC-------
Confidence            33 3343333   457999999874   3333 3 34459999998765433222222355566666665543       


Q ss_pred             ccccCCCceeE--EeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCc-EEEEEeecC
Q 036510          169 SGFLDPVQKLC--SGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGK-VIIWTVARE  245 (288)
Q Consensus       169 ~~~~~~~~~l~--s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~-i~iw~~~~~  245 (288)
                             .+++  ..-..|.|.|||..+-    +.+..+..|++.+-+++|+|+    +.+|||+|+-|+ ||++.+...
T Consensus       142 -------~ylAyp~s~t~GdV~l~d~~nl----~~v~~I~aH~~~lAalafs~~----G~llATASeKGTVIRVf~v~~G  206 (391)
T KOG2110|consen  142 -------CYLAYPGSTTSGDVVLFDTINL----QPVNTINAHKGPLAALAFSPD----GTLLATASEKGTVIRVFSVPEG  206 (391)
T ss_pred             -------ceEEecCCCCCceEEEEEcccc----eeeeEEEecCCceeEEEECCC----CCEEEEeccCceEEEEEEcCCc
Confidence                   2333  2223567999998763    445567899999999999998    489999999886 899988643


Q ss_pred             CCcccceEeeccc-----cCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          246 GDQWEGKVLHDFK-----TPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       246 ~~~~~~~~~~~~~-----~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                            ..+++|.     ..|++++|+||+++|++.|..+||+|+++
T Consensus       207 ------~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL  247 (391)
T KOG2110|consen  207 ------QKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKL  247 (391)
T ss_pred             ------cEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEe
Confidence                  3444443     35899999999999999999999999985

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=1.9e-16  Score=135.39  Aligned_cols=264  Identities=16%  Similarity=0.203  Sum_probs=190.4

Q ss_pred             CccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510            4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVII   83 (288)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i   83 (288)
                      ++.+.+|.+-|..|.|+..|..|+|||.|..|.+||+..... .+.-..||...|....|.|..+...+++++.||.|++
T Consensus       135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~-~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~  213 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP-KLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV  213 (559)
T ss_pred             hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCc-ccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence            456779999999999999999999999999999999864422 2333468999999999887656789999999999999


Q ss_pred             eecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCC---CeeEEEeCCC
Q 036510           84 WKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV---GVTSVSWAPS  160 (288)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~---~v~~i~~~p~  160 (288)
                      =.+-..+.....+.+..|.++|.-++.-|+. ...+.+++.|+.+.-+|++.+.....+...+.+..   ...+|+-.|.
T Consensus       214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~s-p~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~  292 (559)
T KOG1334|consen  214 SEILETGYVENTKRLAPHEGPVHKLAVEPDS-PKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR  292 (559)
T ss_pred             eeeccccceecceecccccCccceeeecCCC-CCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence            7765444333344566799999999998874 55688999999999999988765444444444443   5667777776


Q ss_pred             CCCCceecccccCCCceeEEeecCCcEEEEEEeCCcee-------eeeeecccc-CCcceEEEEecCCCCCCCcEEEEEe
Q 036510          161 TAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWK-------MDCFPALQM-HTDWVRDVAWAPNLGLPKSTIASAS  232 (288)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-------~~~~~~~~~-h~~~V~~v~~sp~~~~~~~~l~s~s  232 (288)
                      .+             +.+++|+.|..+++||.+.-..+       .-+.+.+.. ..-.|+++.|+.+.    .-|++.-
T Consensus       293 nt-------------~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~----sElLaSY  355 (559)
T KOG1334|consen  293 NT-------------NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDG----SELLASY  355 (559)
T ss_pred             Cc-------------cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCc----cceeeee
Confidence            53             67999999999999998642110       011222222 22258999999763    2355555


Q ss_pred             CCCcEEEEEeecCCC----------cccceEeecccc--CeEEEEee-cCCCEEEEEeCCCcEEEeE
Q 036510          233 EDGKVIIWTVAREGD----------QWEGKVLHDFKT--PVYRVSWS-LTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       233 ~D~~i~iw~~~~~~~----------~~~~~~~~~~~~--~i~~~~~s-pdg~~l~s~~~d~~v~~w~  286 (288)
                      .|-.|.++.......          +......++|.+  .|..+.|- |.-.++++||.=|.|-||+
T Consensus       356 nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~  422 (559)
T KOG1334|consen  356 NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD  422 (559)
T ss_pred             cccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence            677888986543322          122233566653  47777654 8999999999889999998

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=2e-15  Score=122.92  Aligned_cols=251  Identities=16%  Similarity=0.255  Sum_probs=166.7

Q ss_pred             CCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEE
Q 036510            3 PQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVI   82 (288)
Q Consensus         3 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~   82 (288)
                      +-+++++|..+|++++||++|+.|+++|.|.+|.+||+..+  .+++.+. ...+|+.+.|.|- +-+.++.+=.+..-.
T Consensus        57 iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g--s~l~rir-f~spv~~~q~hp~-k~n~~va~~~~~sp~  132 (405)
T KOG1273|consen   57 IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG--SPLKRIR-FDSPVWGAQWHPR-KRNKCVATIMEESPV  132 (405)
T ss_pred             hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCC--CceeEEE-ccCccceeeeccc-cCCeEEEEEecCCcE
Confidence            34578899999999999999999999999999999999655  3555554 4678999999643 445555555555555


Q ss_pred             EeecCCCCceEEeEEeecC----C-CceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEe
Q 036510           83 IWKEGNSNEWIKDHVFEDH----K-SSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSW  157 (288)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h----~-~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~  157 (288)
                      +-++.++.    ...++.-    . ....+..|.+.  +.++.+|...|.+-+|+..+.......++.  ....|..|.+
T Consensus       133 vi~~s~~~----h~~Lp~d~d~dln~sas~~~fdr~--g~yIitGtsKGkllv~~a~t~e~vas~rit--s~~~IK~I~~  204 (405)
T KOG1273|consen  133 VIDFSDPK----HSVLPKDDDGDLNSSASHGVFDRR--GKYIITGTSKGKLLVYDAETLECVASFRIT--SVQAIKQIIV  204 (405)
T ss_pred             EEEecCCc----eeeccCCCccccccccccccccCC--CCEEEEecCcceEEEEecchheeeeeeeec--hheeeeEEEE
Confidence            55554422    1112210    0 01112235554  789999999999999998765433222221  1245777777


Q ss_pred             CCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCc-----eeeeeeecccc--CCcceEEEEecCCCCCCCcEEEE
Q 036510          158 APSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGI-----WKMDCFPALQM--HTDWVRDVAWAPNLGLPKSTIAS  230 (288)
Q Consensus       158 ~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~~--h~~~V~~v~~sp~~~~~~~~l~s  230 (288)
                      +..+              .+|+.-+.|+.||.|+++.-.     .+.+..+.++.  .+-.=++++|+.++    .|+++
T Consensus       205 s~~g--------------~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg----eYv~a  266 (405)
T KOG1273|consen  205 SRKG--------------RFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG----EYVCA  266 (405)
T ss_pred             eccC--------------cEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc----cEEEe
Confidence            7655              788999999999999986310     01121122211  11122567888764    57777


Q ss_pred             EeC-CCcEEEEEeecCCCcccceEeeccc-cCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          231 ASE-DGKVIIWTVAREGDQWEGKVLHDFK-TPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       231 ~s~-D~~i~iw~~~~~~~~~~~~~~~~~~-~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      |+. --.+.||.-....   ..+.+++.+ .....++|+|--..+++- +.|+|++|..
T Consensus       267 ~s~~aHaLYIWE~~~Gs---LVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~  321 (405)
T KOG1273|consen  267 GSARAHALYIWEKSIGS---LVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAV  321 (405)
T ss_pred             ccccceeEEEEecCCcc---eeeeecCCchhheeecccccceeeeeec-cCCceEEEEe
Confidence            775 4479999755421   235556655 457889999999999988 7799999974

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=2.8e-15  Score=138.52  Aligned_cols=257  Identities=15%  Similarity=0.211  Sum_probs=171.0

Q ss_pred             ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEec---cccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510            7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSG---HKGAVWEVAWAHPKFGSILASCSFDGTVII   83 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i   83 (288)
                      .++..+.-..+.|.|-...++++..-..|++||...+  +.+..+..   ....|..+.+-...+..++++||.||.|||
T Consensus      1060 ~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~--~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRI 1137 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKG--RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRI 1137 (1387)
T ss_pred             HhcCCCCCceeeecCCCceeEEcCCcceEEEEecccC--ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEE
Confidence            3444445566889999999999887779999998643  34444433   235688888887667889999999999999


Q ss_pred             eecC-CC-CceEEeEEee-------cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeE
Q 036510           84 WKEG-NS-NEWIKDHVFE-------DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTS  154 (288)
Q Consensus        84 wd~~-~~-~~~~~~~~~~-------~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~  154 (288)
                      |+-- +. +....+..+.       +-.+.-.-++|.-. +|.++++| .-..|+|||........  .+.-+....+++
T Consensus      1138 wk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~-~G~Ll~tG-d~r~IRIWDa~~E~~~~--diP~~s~t~vTa 1213 (1387)
T KOG1517|consen 1138 WKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQ-SGHLLVTG-DVRSIRIWDAHKEQVVA--DIPYGSSTLVTA 1213 (1387)
T ss_pred             ecccccccCCceeEEeeccccccCccCCCCCeeeehhhh-CCeEEecC-CeeEEEEEecccceeEe--ecccCCCcccee
Confidence            9743 22 2222222221       22222233567643 46655555 47899999987542211  111222333555


Q ss_pred             EEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcc--eEEEEecCCCCCCCcEEEEEe
Q 036510          155 VSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDW--VRDVAWAPNLGLPKSTIASAS  232 (288)
Q Consensus       155 i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~--V~~v~~sp~~~~~~~~l~s~s  232 (288)
                      ++-+-            . .++.++.|-.||.|++||.+..... ..+...+.|.++  |..+.+.+.+ +  .-|++||
T Consensus      1214 LS~~~------------~-~gn~i~AGfaDGsvRvyD~R~a~~d-s~v~~~R~h~~~~~Iv~~slq~~G-~--~elvSgs 1276 (1387)
T KOG1517|consen 1214 LSADL------------V-HGNIIAAGFADGSVRVYDRRMAPPD-SLVCVYREHNDVEPIVHLSLQRQG-L--GELVSGS 1276 (1387)
T ss_pred             ecccc------------c-CCceEEEeecCCceEEeecccCCcc-ccceeecccCCcccceeEEeecCC-C--cceeeec
Confidence            43211            1 1478999999999999999865321 234455778887  9999999864 1  2599999


Q ss_pred             CCCcEEEEEeecCCCcccceEee--ccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          233 EDGKVIIWTVAREGDQWEGKVLH--DFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       233 ~D~~i~iw~~~~~~~~~~~~~~~--~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      .||.|++||++............  +.++.++++.-|++-..+|+|++ +.|+||++
T Consensus      1277 ~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~ 1332 (1387)
T KOG1517|consen 1277 QDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSL 1332 (1387)
T ss_pred             cCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEec
Confidence            99999999998631111112222  22446899999999999999999 99999985

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=5e-15  Score=116.71  Aligned_cols=237  Identities=19%  Similarity=0.260  Sum_probs=158.7

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCcEEEEEeCC-------CCc-eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510           12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGN-------NTS-QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVII   83 (288)
Q Consensus        12 ~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~-------~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i   83 (288)
                      ..|..-+++|.+++|++|+.+|.|.+..+..       +.+ ..+....+|.++|+.++|.    ...|++|+. |.|+-
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~----d~~Lls~gd-G~V~g   85 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH----DDFLLSGGD-GLVYG   85 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee----hhheeeccC-ceEEE
Confidence            3455667899999999999999999997741       112 2355668999999999984    256777665 99999


Q ss_pred             eecCCCC-------ceE---EeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCee
Q 036510           84 WKEGNSN-------EWI---KDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVT  153 (288)
Q Consensus        84 wd~~~~~-------~~~---~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~  153 (288)
                      |.-+...       .|.   ++++-....-.|+++.+.|.+... +. ++.|+.++-||+.++.   ..+...+|++-+.
T Consensus        86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi-~~-AgGD~~~y~~dlE~G~---i~r~~rGHtDYvH  160 (325)
T KOG0649|consen   86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSI-LF-AGGDGVIYQVDLEDGR---IQREYRGHTDYVH  160 (325)
T ss_pred             eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcE-EE-ecCCeEEEEEEecCCE---EEEEEcCCcceee
Confidence            8653211       111   111101122368899999986443 33 3479999999998763   2356789999999


Q ss_pred             EEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeec------cccC-CcceEEEEecCCCCCCCc
Q 036510          154 SVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPA------LQMH-TDWVRDVAWAPNLGLPKS  226 (288)
Q Consensus       154 ~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------~~~h-~~~V~~v~~sp~~~~~~~  226 (288)
                      ++.-....              ..+.||++||++|+||.+++... +++..      ++-| ..+|.+++-+.+      
T Consensus       161 ~vv~R~~~--------------~qilsG~EDGtvRvWd~kt~k~v-~~ie~yk~~~~lRp~~g~wigala~~ed------  219 (325)
T KOG0649|consen  161 SVVGRNAN--------------GQILSGAEDGTVRVWDTKTQKHV-SMIEPYKNPNLLRPDWGKWIGALAVNED------  219 (325)
T ss_pred             eeeecccC--------------cceeecCCCccEEEEecccccee-EEeccccChhhcCcccCceeEEEeccCc------
Confidence            98752222              35889999999999999886321 11111      1222 336778876654      


Q ss_pred             EEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          227 TIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       227 ~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      .++.|+ ...+.+|.+++.    +...+..+.+++.-+.|  +...+++++.-+.|+=|.
T Consensus       220 WlvCGg-Gp~lslwhLrss----e~t~vfpipa~v~~v~F--~~d~vl~~G~g~~v~~~~  272 (325)
T KOG0649|consen  220 WLVCGG-GPKLSLWHLRSS----ESTCVFPIPARVHLVDF--VDDCVLIGGEGNHVQSYT  272 (325)
T ss_pred             eEEecC-CCceeEEeccCC----CceEEEecccceeEeee--ecceEEEeccccceeeee
Confidence            565554 457889999853    34556677788888888  455666676666666665

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=1.1e-16  Score=138.98  Aligned_cols=212  Identities=24%  Similarity=0.286  Sum_probs=145.8

Q ss_pred             CCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCC--------CceeeEEEeccccCeEEEEecCCCCCCEEEE
Q 036510            3 PQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNN--------TSQHLAKLSGHKGAVWEVAWAHPKFGSILAS   74 (288)
Q Consensus         3 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~--------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s   74 (288)
                      |-..+.+|+++|-|++.++.+..+.+|+.||+|++|++...        ......++.||++.||.++++..  ...|++
T Consensus       336 pi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~--~~~Lls  413 (577)
T KOG0642|consen  336 PILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSST--KDRLLS  413 (577)
T ss_pred             eeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccc--ccceee
Confidence            44567899999999999999999999999999999976411        01235678899999999999864  567999


Q ss_pred             eeCCCcEEEeecCCCCceEEeEEee---cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEee----cc
Q 036510           75 CSFDGTVIIWKEGNSNEWIKDHVFE---DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRID----QA  147 (288)
Q Consensus        75 ~s~d~~v~iwd~~~~~~~~~~~~~~---~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~----~~  147 (288)
                      ||.||++++|+......    .++.   .|. --.++++-.......+++. .-+.-.+++......+..+...    ..
T Consensus       414 cs~DgTvr~w~~~~~~~----~~f~~~~e~g-~Plsvd~~ss~~a~~~~s~-~~~~~~~~~~ev~s~~~~~~s~~~~~~~  487 (577)
T KOG0642|consen  414 CSSDGTVRLWEPTEESP----CTFGEPKEHG-YPLSVDRTSSRPAHSLASF-RFGYTSIDDMEVVSDLLIFESSASPGPR  487 (577)
T ss_pred             ecCCceEEeeccCCcCc----cccCCccccC-CcceEeeccchhHhhhhhc-ccccccchhhhhhhheeeccccCCCccc
Confidence            99999999998754332    1222   122 2234444322111112222 1122222332222221111100    00


Q ss_pred             CCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcE
Q 036510          148 HPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKST  227 (288)
Q Consensus       148 ~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~  227 (288)
                      -...+..+.+.|..              .+..++..|+.|+++|..++    +.+++...|...|.++++.|++    -+
T Consensus       488 ~~~~in~vVs~~~~--------------~~~~~~hed~~Ir~~dn~~~----~~l~s~~a~~~svtslai~~ng----~~  545 (577)
T KOG0642|consen  488 RYPQINKVVSHPTA--------------DITFTAHEDRSIRFFDNKTG----KILHSMVAHKDSVTSLAIDPNG----PY  545 (577)
T ss_pred             ccCccceEEecCCC--------------CeeEecccCCceeccccccc----ccchheeeccceecceeecCCC----ce
Confidence            12346677788776              56889999999999998876    5778888999999999999985    58


Q ss_pred             EEEEeCCCcEEEEEeec
Q 036510          228 IASASEDGKVIIWTVAR  244 (288)
Q Consensus       228 l~s~s~D~~i~iw~~~~  244 (288)
                      |.+++.|+.+++|++..
T Consensus       546 l~s~s~d~sv~l~kld~  562 (577)
T KOG0642|consen  546 LMSGSHDGSVRLWKLDV  562 (577)
T ss_pred             EEeecCCceeehhhccc
Confidence            99999999999998764

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=1e-15  Score=128.82  Aligned_cols=203  Identities=16%  Similarity=0.189  Sum_probs=144.9

Q ss_pred             EEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEE
Q 036510           15 HDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIK   94 (288)
Q Consensus        15 ~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~   94 (288)
                      -.++|+.+|+.|++|+.||++|+|+++..  ..+.....|...|.++.|+++  |..|++-+.| ..+||+..++..+..
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~--~t~l~e~~~~~eV~DL~FS~d--gk~lasig~d-~~~VW~~~~g~~~a~  222 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM--LTILEEIAHHAEVKDLDFSPD--GKFLASIGAD-SARVWSVNTGAALAR  222 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcc--hhhhhhHhhcCccccceeCCC--CcEEEEecCC-ceEEEEeccCchhhh
Confidence            45789999999999999999999998533  445556789999999999975  8999999999 999999987643211


Q ss_pred             eEEeecCCCceeEEEeccCCC--C-eEEEEEeCCCcEEEEeecCC--CCeeeEEeeccCCCCeeEEEeCCCCCCCceecc
Q 036510           95 DHVFEDHKSSVNSIDWAPHEL--G-LCLACGSSDGNISVFTARAD--GGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS  169 (288)
Q Consensus        95 ~~~~~~h~~~v~~l~~~p~~~--~-~~l~sg~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~  169 (288)
                       .+-..-......++|..++.  . ++++.-..-+.|+.|++..-  +...+......-...|.+++-++++        
T Consensus       223 -~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dG--------  293 (398)
T KOG0771|consen  223 -KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDG--------  293 (398)
T ss_pred             -cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCC--------
Confidence             11011223456778877642  1 33334455667888776421  1111111111123468888888876        


Q ss_pred             cccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510          170 GFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR  244 (288)
Q Consensus       170 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~  244 (288)
                            ++++.|+-||.|-|++..+-   +.....-+.|...|+.+.|+|+.    +++++.|.|.++.+..+..
T Consensus       294 ------kf~AlGT~dGsVai~~~~~l---q~~~~vk~aH~~~VT~ltF~Pds----r~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  294 ------KFLALGTMDGSVAIYDAKSL---QRLQYVKEAHLGFVTGLTFSPDS----RYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             ------cEEEEeccCCcEEEEEecee---eeeEeehhhheeeeeeEEEcCCc----CcccccccCCceeEEEEee
Confidence                  89999999999999998652   12233447899999999999985    5789999999999988764

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=2e-15  Score=132.01  Aligned_cols=221  Identities=21%  Similarity=0.317  Sum_probs=147.3

Q ss_pred             eeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCC
Q 036510           47 HLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDG  126 (288)
Q Consensus        47 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~  126 (288)
                      +-..+.||++.|.+|...+  .|..|++||.||+|+||.++++.+.   +++. ....|.|++|+|....-+||++- ++
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp--~G~wlasGsdDGtvriWEi~TgRcv---r~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~  464 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDP--SGEWLASGSDDGTVRIWEIATGRCV---RTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GE  464 (733)
T ss_pred             eeeeEeccCCeEEEEEecC--CcceeeecCCCCcEEEEEeecceEE---EEEe-ecceeEEEEecCCCCceeEEEEe-cC
Confidence            3456789999999999865  4999999999999999999988743   3332 34589999999986444444443 33


Q ss_pred             cEEEEeecCCC-------------------------Ceee---------EEeeccCCCCeeEEEeCCCCCCCceec----
Q 036510          127 NISVFTARADG-------------------------GWDT---------SRIDQAHPVGVTSVSWAPSTAPGALVG----  168 (288)
Q Consensus       127 ~i~i~d~~~~~-------------------------~~~~---------~~~~~~~~~~v~~i~~~p~~~~~~~~~----  168 (288)
                      .+.|-+..-+.                         .|..         ....-.|...|..+.|...+-..+.+.    
T Consensus       465 ~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~  544 (733)
T KOG0650|consen  465 CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG  544 (733)
T ss_pred             ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence            35454432110                         0110         012224677788888887662111000    


Q ss_pred             ---------------ccc-----------cCC-CceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCC
Q 036510          169 ---------------SGF-----------LDP-VQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNL  221 (288)
Q Consensus       169 ---------------~~~-----------~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~  221 (288)
                                     ..|           +.+ ..+|..++ -+.|+|||+..+    +.+..+....-+|..++.+|.+
T Consensus       545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kq----elvKkL~tg~kwiS~msihp~G  619 (733)
T KOG0650|consen  545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQ----ELVKKLLTGSKWISSMSIHPNG  619 (733)
T ss_pred             cceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHH----HHHHHHhcCCeeeeeeeecCCC
Confidence                           001           111 11233322 467888888653    3455566667789999999964


Q ss_pred             CCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEe
Q 036510          222 GLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLW  285 (288)
Q Consensus       222 ~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w  285 (288)
                          ..|+.|+.|+.+..+|+.....+..  .+.-|.+.+.+|+||+.-.+|++|+.|+++.|+
T Consensus       620 ----Dnli~gs~d~k~~WfDldlsskPyk--~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf  677 (733)
T KOG0650|consen  620 ----DNLILGSYDKKMCWFDLDLSSKPYK--TLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF  677 (733)
T ss_pred             ----CeEEEecCCCeeEEEEcccCcchhH--HhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence                4688999999999999986533322  223356789999999999999999999999886

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=3.3e-15  Score=138.12  Aligned_cols=250  Identities=18%  Similarity=0.212  Sum_probs=162.9

Q ss_pred             ccceEEEEE-cC-CCCEEEEeeCCCcEEEEEeCC---CCceeeEE---EeccccC---e-EEEEecCCCCCCEEEEeeCC
Q 036510           11 EDTVHDVAM-DY-YGKRLATASSDYSIKIIGVGN---NTSQHLAK---LSGHKGA---V-WEVAWAHPKFGSILASCSFD   78 (288)
Q Consensus        11 ~~~v~~~~~-s~-~g~~l~s~~~d~~i~lwd~~~---~~~~~~~~---~~~h~~~---v-~~~~~~~~~~~~~l~s~s~d   78 (288)
                      ...|+.+++ +. |-.+|++|+.||.||||+-..   ...+.+-.   +.++...   . .-+.|-. . ..+|++++.-
T Consensus      1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ-~-~G~Ll~tGd~ 1186 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQ-Q-SGHLLVTGDV 1186 (1387)
T ss_pred             CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhh-h-CCeEEecCCe
Confidence            356777775 43 457899999999999996422   12222221   2222211   1 1244532 2 4456666668


Q ss_pred             CcEEEeecCCCCceEEeEEee-cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCC--eeEE
Q 036510           79 GTVIIWKEGNSNEWIKDHVFE-DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVG--VTSV  155 (288)
Q Consensus        79 ~~v~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~--v~~i  155 (288)
                      ..|+|||.....   ....++ +-...|++++-+-.+ +.++++|-.||.|++||.|....-........|+..  |..+
T Consensus      1187 r~IRIWDa~~E~---~~~diP~~s~t~vTaLS~~~~~-gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~ 1262 (1387)
T KOG1517|consen 1187 RSIRIWDAHKEQ---VVADIPYGSSTLVTALSADLVH-GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHL 1262 (1387)
T ss_pred             eEEEEEecccce---eEeecccCCCccceeecccccC-CceEEEeecCCceEEeecccCCccccceeecccCCcccceeE
Confidence            999999986533   233332 233456666544333 678999999999999999865432334455667766  8888


Q ss_pred             EeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCC--c-ceEEEEecCCCCCCCcEEEEEe
Q 036510          156 SWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHT--D-WVRDVAWAPNLGLPKSTIASAS  232 (288)
Q Consensus       156 ~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~--~-~V~~v~~sp~~~~~~~~l~s~s  232 (288)
                      .+.+.+.             ..|++|+.||.|++||++... . +-..+...|.  + ..+++..+++.    ..+|+|+
T Consensus      1263 slq~~G~-------------~elvSgs~~G~I~~~DlR~~~-~-e~~~~iv~~~~yGs~lTal~VH~ha----piiAsGs 1323 (1387)
T KOG1517|consen 1263 SLQRQGL-------------GELVSGSQDGDIQLLDLRMSS-K-ETFLTIVAHWEYGSALTALTVHEHA----PIIASGS 1323 (1387)
T ss_pred             EeecCCC-------------cceeeeccCCeEEEEecccCc-c-cccceeeeccccCccceeeeeccCC----CeeeecC
Confidence            8887762             469999999999999998741 1 1111222232  2 37888888874    5789998


Q ss_pred             CCCcEEEEEeecCCCc---ccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          233 EDGKVIIWTVAREGDQ---WEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       233 ~D~~i~iw~~~~~~~~---~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      . +.|+||++.-.+..   .....+..-.+.+.+++|||---++|+|+.|.+|.||.
T Consensus      1324 ~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1324 A-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred             c-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence            8 99999998743211   00011112235689999999999999999999999986

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.68  E-value=1e-15  Score=134.75  Aligned_cols=232  Identities=15%  Similarity=0.193  Sum_probs=154.5

Q ss_pred             eeCCCcEEEEEeCCCCcee----eEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC----ceEEeEEeec
Q 036510           29 ASSDYSIKIIGVGNNTSQH----LAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN----EWIKDHVFED  100 (288)
Q Consensus        29 ~~~d~~i~lwd~~~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~----~~~~~~~~~~  100 (288)
                      +|..|.|.||++..+ ++.    +-.+- ....|+++.|.+ .+.+.|+.+++||.|++|.+..++    +......+..
T Consensus       599 ~g~gG~iai~el~~P-GrLPDgv~p~l~-Ngt~vtDl~WdP-FD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~  675 (1012)
T KOG1445|consen  599 AGSGGVIAIYELNEP-GRLPDGVMPGLF-NGTLVTDLHWDP-FDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTI  675 (1012)
T ss_pred             cCCCceEEEEEcCCC-CCCCcccccccc-cCceeeecccCC-CChHHeeecccCceEEEEEeccCCCCcccCCcceeeec
Confidence            455688999998643 221    11111 245689999975 467899999999999999875432    1223356778


Q ss_pred             CCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEE
Q 036510          101 HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCS  180 (288)
Q Consensus       101 h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s  180 (288)
                      |..+|++++|||-. ..+|++++.|-+|++||++....   ...+.+|+++|..++|+|++              +.++|
T Consensus       676 h~eKI~slRfHPLA-advLa~asyd~Ti~lWDl~~~~~---~~~l~gHtdqIf~~AWSpdG--------------r~~At  737 (1012)
T KOG1445|consen  676 HGEKITSLRFHPLA-ADVLAVASYDSTIELWDLANAKL---YSRLVGHTDQIFGIAWSPDG--------------RRIAT  737 (1012)
T ss_pred             ccceEEEEEecchh-hhHhhhhhccceeeeeehhhhhh---hheeccCcCceeEEEECCCC--------------cceee
Confidence            99999999999975 56789999999999999987532   23457899999999999998              78999


Q ss_pred             eecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCC----cEEEEEeecCCCcccceEeec
Q 036510          181 GGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG----KVIIWTVAREGDQWEGKVLHD  256 (288)
Q Consensus       181 ~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~----~i~iw~~~~~~~~~~~~~~~~  256 (288)
                      .+.|++|++|+.+.+...+..-....+-.+  -.|-|.-+    +.+++..+.|+    .|.+||.+.-.........-+
T Consensus       738 VcKDg~~rVy~Prs~e~pv~Eg~gpvgtRg--ARi~wacd----gr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lD  811 (1012)
T KOG1445|consen  738 VCKDGTLRVYEPRSREQPVYEGKGPVGTRG--ARILWACD----GRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLD  811 (1012)
T ss_pred             eecCceEEEeCCCCCCCccccCCCCccCcc--eeEEEEec----CcEEEEecccccchhhhhhhhhhhccCCcceeeeec
Confidence            999999999998776422111111111111  23455555    35666666655    588888764221100011001


Q ss_pred             cccCeEEEEeecCC-CEEEEEeCCCcEEEeEc
Q 036510          257 FKTPVYRVSWSLTG-NILAVADGNNNVTLWEE  287 (288)
Q Consensus       257 ~~~~i~~~~~spdg-~~l~s~~~d~~v~~w~~  287 (288)
                      ..-.+.--.|.+|. -.|++|-.|..|.+|.+
T Consensus       812 vaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv  843 (1012)
T KOG1445|consen  812 VAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEV  843 (1012)
T ss_pred             ccCccccccccCCCceEEEecCCCceEEEEEe
Confidence            11112223455664 56889999999999874

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=9.8e-15  Score=130.99  Aligned_cols=222  Identities=18%  Similarity=0.179  Sum_probs=144.0

Q ss_pred             ccccccceEEEEEcCCCCEEEEeeCC---CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEe-eCCCcEE
Q 036510            7 ETGHEDTVHDVAMDYYGKRLATASSD---YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASC-SFDGTVI   82 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~~l~s~~~d---~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-s~d~~v~   82 (288)
                      ++.|...+...+|+|||++|+.++.+   ..|++||+..+..+.+..+.+|.   ..++|+++  |+.|+.+ +.++.+.
T Consensus       199 lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPD--G~~La~~~~~~g~~~  273 (429)
T PRK01742        199 VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPD--GSRLAFASSKDGVLN  273 (429)
T ss_pred             eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCC--CCEEEEEEecCCcEE
Confidence            45677889999999999999988764   36999998654434454455554   35799875  7777765 4688877


Q ss_pred             Eeec--CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCC
Q 036510           83 IWKE--GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPS  160 (288)
Q Consensus        83 iwd~--~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~  160 (288)
                      ||.+  ..+.    ...+..+...+....|+|++ ..++.+...++...||++........  .. .+..  ....|+|+
T Consensus       274 Iy~~d~~~~~----~~~lt~~~~~~~~~~wSpDG-~~i~f~s~~~g~~~I~~~~~~~~~~~--~l-~~~~--~~~~~SpD  343 (429)
T PRK01742        274 IYVMGANGGT----PSQLTSGAGNNTEPSWSPDG-QSILFTSDRSGSPQVYRMSASGGGAS--LV-GGRG--YSAQISAD  343 (429)
T ss_pred             EEEEECCCCC----eEeeccCCCCcCCEEECCCC-CEEEEEECCCCCceEEEEECCCCCeE--Ee-cCCC--CCccCCCC
Confidence            7744  3332    23345566678899999984 23344455678889998765332211  11 2222  45678888


Q ss_pred             CCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEE
Q 036510          161 TAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIW  240 (288)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw  240 (288)
                      +              +.++..+.++ +.+||+.++...  .+.  ..+  ...++.|+|++    .+|+.++.++.+++|
T Consensus       344 G--------------~~ia~~~~~~-i~~~Dl~~g~~~--~lt--~~~--~~~~~~~sPdG----~~i~~~s~~g~~~~l  398 (429)
T PRK01742        344 G--------------KTLVMINGDN-VVKQDLTSGSTE--VLS--STF--LDESPSISPNG----IMIIYSSTQGLGKVL  398 (429)
T ss_pred             C--------------CEEEEEcCCC-EEEEECCCCCeE--Eec--CCC--CCCCceECCCC----CEEEEEEcCCCceEE
Confidence            7              5666666555 556998776321  111  112  13567899984    689999999999998


Q ss_pred             EeecCCCcccceEeeccccCeEEEEeecC
Q 036510          241 TVAREGDQWEGKVLHDFKTPVYRVSWSLT  269 (288)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~i~~~~~spd  269 (288)
                      .+...... ....+..+.+.+...+|||-
T Consensus       399 ~~~~~~G~-~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        399 QLVSADGR-FKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             EEEECCCC-ceEEccCCCCCCCCcccCCC
Confidence            87543222 22344555667888999985

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=4.8e-14  Score=128.32  Aligned_cols=272  Identities=19%  Similarity=0.251  Sum_probs=168.7

Q ss_pred             CccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCC--CCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcE
Q 036510            4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGN--NTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTV   81 (288)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v   81 (288)
                      +++...|+..+++.+++|.++++|+|..||.|.+|.--.  ........+.=|...|.+++|+++  |.+|+||+..+.+
T Consensus       198 ~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~--G~~LlSGG~E~VL  275 (792)
T KOG1963|consen  198 RDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSD--GAYLLSGGREGVL  275 (792)
T ss_pred             chhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecC--CceEeecccceEE
Confidence            445557888889999999999999999999999995322  222334566779999999999975  9999999999999


Q ss_pred             EEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCC------eeeEEee-c-cCCCCee
Q 036510           82 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGG------WDTSRID-Q-AHPVGVT  153 (288)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~------~~~~~~~-~-~~~~~v~  153 (288)
                      -+|.++++..    .-++.-..+|..+.++||.  .+.+....|+.|.+-.......      ..+.... + .-..-.+
T Consensus       276 v~Wq~~T~~k----qfLPRLgs~I~~i~vS~ds--~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t  349 (792)
T KOG1963|consen  276 VLWQLETGKK----QFLPRLGSPILHIVVSPDS--DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTT  349 (792)
T ss_pred             EEEeecCCCc----ccccccCCeeEEEEEcCCC--CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccce
Confidence            9999987652    3355566799999999984  4455556799998875522110      0000000 0 0001122


Q ss_pred             EEEeCCCCC-------CCc--e------------------------------ecccccCCCceeEEee--------cC--
Q 036510          154 SVSWAPSTA-------PGA--L------------------------------VGSGFLDPVQKLCSGG--------CD--  184 (288)
Q Consensus       154 ~i~~~p~~~-------~~~--~------------------------------~~~~~~~~~~~l~s~~--------~d--  184 (288)
                      -+..+|...       .+.  +                              +.......++.++|..        .|  
T Consensus       350 ~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e  429 (792)
T KOG1963|consen  350 GVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGE  429 (792)
T ss_pred             eEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCce
Confidence            222333110       000  0                              0001111244555542        22  


Q ss_pred             CcEEEEEEeCCceeeeeeec-cccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCC------CcccceEeec-
Q 036510          185 NTVKVWKLYNGIWKMDCFPA-LQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG------DQWEGKVLHD-  256 (288)
Q Consensus       185 ~~i~iwd~~~~~~~~~~~~~-~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~------~~~~~~~~~~-  256 (288)
                      -.+|+|-.........+... ..-|...+...+|.+...  ..+.++++.|+.++||-++.-.      ..|....+.- 
T Consensus       430 ~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~r--s~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy  507 (792)
T KOG1963|consen  430 VSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTR--SVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY  507 (792)
T ss_pred             EEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcc--cceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc
Confidence            24677766544322222111 245777666666665432  1279999999999999995321      1222222222 


Q ss_pred             cccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          257 FKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       257 ~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      +..++.+++|+.||+.|+++ .|++|.+||
T Consensus       508 ~k~~i~a~~fs~dGslla~s-~~~~Itiwd  536 (792)
T KOG1963|consen  508 HKTPITALCFSQDGSLLAVS-FDDTITIWD  536 (792)
T ss_pred             ccCcccchhhcCCCcEEEEe-cCCEEEEec
Confidence            34689999999999877655 889999998

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=1.4e-15  Score=131.81  Aligned_cols=223  Identities=19%  Similarity=0.271  Sum_probs=157.7

Q ss_pred             CccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEE-eccccCeEEEEecCCCCCCEEEEeeCCCcEE
Q 036510            4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKL-SGHKGAVWEVAWAHPKFGSILASCSFDGTVI   82 (288)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~   82 (288)
                      .+.+.||++=|+++.|+.+|.+|+|||.|-.+.|||.-  ..+.++.+ .||.+.|.++.|.|.....+++||+.|..|+
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~--~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~  120 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPF--EYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK  120 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecch--hcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence            34578999999999999999999999999999999975  34566666 5899999999999877788999999999999


Q ss_pred             EeecCCCCc-------eEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEE-----eeccCC-
Q 036510           83 IWKEGNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSR-----IDQAHP-  149 (288)
Q Consensus        83 iwd~~~~~~-------~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~-----~~~~~~-  149 (288)
                      ++|+...+.       .+....+.-|...|..++-.|.. ...+-+++.||+|+-||+|+...+.+-.     ....++ 
T Consensus       121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~-PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~  199 (758)
T KOG1310|consen  121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG-PHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ  199 (758)
T ss_pred             EEecccccccccccCccchhhhhhhhhhhhhheecCCCC-CceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence            999864211       11223344588889999988874 4678899999999999999753222111     011121 


Q ss_pred             -CCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCC--------ceee------eeeecc-ccCC----
Q 036510          150 -VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNG--------IWKM------DCFPAL-QMHT----  209 (288)
Q Consensus       150 -~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--------~~~~------~~~~~~-~~h~----  209 (288)
                       ....++..+|..+             .+|+.|+.|-..++||.+.-        ....      .|+..+ -+|.    
T Consensus       200 lielk~ltisp~rp-------------~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~  266 (758)
T KOG1310|consen  200 LIELKCLTISPSRP-------------YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQ  266 (758)
T ss_pred             hheeeeeeecCCCC-------------ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcc
Confidence             2356777788764             78999999999999995321        0000      011111 1221    


Q ss_pred             ----cc---eEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCC
Q 036510          210 ----DW---VRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG  246 (288)
Q Consensus       210 ----~~---V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~  246 (288)
                          ..   +.-|.|+|++   ..+||+-+.+ .|.++|+...+
T Consensus       267 gn~~~~~~~~t~vtfnpNG---tElLvs~~gE-hVYlfdvn~~~  306 (758)
T KOG1310|consen  267 GNLDRYITCCTYVTFNPNG---TELLVSWGGE-HVYLFDVNEDK  306 (758)
T ss_pred             cccccceeeeEEEEECCCC---cEEEEeeCCe-EEEEEeecCCC
Confidence                12   4557899985   3456665554 79999998653

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=3.5e-14  Score=127.46  Aligned_cols=213  Identities=16%  Similarity=0.200  Sum_probs=135.9

Q ss_pred             CCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC---CcEEEeecCCCCceEEeEEeecCCCceeEE
Q 036510           32 DYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD---GTVIIWKEGNSNEWIKDHVFEDHKSSVNSI  108 (288)
Q Consensus        32 d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l  108 (288)
                      +..+++||.++..   ...+..|...+...+|+|+  |+.|+.++.+   ..|.+||+.++.. .....+.+   ....+
T Consensus       183 ~~~i~i~d~dg~~---~~~lt~~~~~v~~p~wSPD--G~~la~~s~~~~~~~i~i~dl~tg~~-~~l~~~~g---~~~~~  253 (429)
T PRK01742        183 PYEVRVADYDGFN---QFIVNRSSQPLMSPAWSPD--GSKLAYVSFENKKSQLVVHDLRSGAR-KVVASFRG---HNGAP  253 (429)
T ss_pred             eEEEEEECCCCCC---ceEeccCCCccccceEcCC--CCEEEEEEecCCCcEEEEEeCCCCce-EEEecCCC---ccCce
Confidence            5789999986532   4556778888999999975  8888887754   4699999876532 12222333   34578


Q ss_pred             EeccCCCCeEEEE-EeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcE
Q 036510          109 DWAPHELGLCLAC-GSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTV  187 (288)
Q Consensus       109 ~~~p~~~~~~l~s-g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i  187 (288)
                      +|+|+  +..++. .+.+|.+.||.+......  ......+...+....|+|++.             .++.++..++..
T Consensus       254 ~wSPD--G~~La~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~-------------~i~f~s~~~g~~  316 (429)
T PRK01742        254 AFSPD--GSRLAFASSKDGVLNIYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQ-------------SILFTSDRSGSP  316 (429)
T ss_pred             eECCC--CCEEEEEEecCCcEEEEEEECCCCC--eEeeccCCCCcCCEEECCCCC-------------EEEEEECCCCCc
Confidence            99998  444554 457887777654322111  122334555677899999972             234455567889


Q ss_pred             EEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEee
Q 036510          188 KVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWS  267 (288)
Q Consensus       188 ~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~s  267 (288)
                      .||++.......+.   + .+..  .+..|+|++    ++|+.++.++ +.+||+.....    ..+... ....++.|+
T Consensus       317 ~I~~~~~~~~~~~~---l-~~~~--~~~~~SpDG----~~ia~~~~~~-i~~~Dl~~g~~----~~lt~~-~~~~~~~~s  380 (429)
T PRK01742        317 QVYRMSASGGGASL---V-GGRG--YSAQISADG----KTLVMINGDN-VVKQDLTSGST----EVLSST-FLDESPSIS  380 (429)
T ss_pred             eEEEEECCCCCeEE---e-cCCC--CCccCCCCC----CEEEEEcCCC-EEEEECCCCCe----EEecCC-CCCCCceEC
Confidence            99988643211121   1 2332  356899984    6788877765 45588764321    122111 123567899


Q ss_pred             cCCCEEEEEeCCCcEEEeE
Q 036510          268 LTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       268 pdg~~l~s~~~d~~v~~w~  286 (288)
                      |||++|+.++.++.+++|+
T Consensus       381 PdG~~i~~~s~~g~~~~l~  399 (429)
T PRK01742        381 PNGIMIIYSSTQGLGKVLQ  399 (429)
T ss_pred             CCCCEEEEEEcCCCceEEE
Confidence            9999999999999888886

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.65  E-value=4.9e-14  Score=127.24  Aligned_cols=233  Identities=19%  Similarity=0.223  Sum_probs=155.4

Q ss_pred             CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCce---EEeEEeecCCCceeEEE
Q 036510           33 YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEW---IKDHVFEDHKSSVNSID  109 (288)
Q Consensus        33 ~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~---~~~~~~~~h~~~v~~l~  109 (288)
                      +.+.+|++..+. ..-..+. -...|.+++|.+ .+..+++.|..+|+|.+||.+.....   ........|..++..+.
T Consensus       222 ~~~~vW~~~~p~-~Pe~~~~-~~s~v~~~~f~p-~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv  298 (555)
T KOG1587|consen  222 GVLLVWSLKNPN-TPELVLE-SPSEVTCLKFCP-FDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV  298 (555)
T ss_pred             ceEEEEecCCCC-CceEEEe-cCCceeEEEecc-CCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence            368899987552 2222333 367899999975 46889999999999999999765421   11112235889999999


Q ss_pred             eccCCCCeEEEEEeCCCcEEEEeecCCCC---eeeEEeec------cCCCCeeEEEeCCCCCCCceecccccCCCceeEE
Q 036510          110 WAPHELGLCLACGSSDGNISVFTARADGG---WDTSRIDQ------AHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCS  180 (288)
Q Consensus       110 ~~p~~~~~~l~sg~~d~~i~i~d~~~~~~---~~~~~~~~------~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s  180 (288)
                      |-.+..+.-+++++.||.|..|+++.-..   ........      .-..++++++|.|..+             +.++.
T Consensus       299 W~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p-------------~~FiV  365 (555)
T KOG1587|consen  299 WLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP-------------NHFIV  365 (555)
T ss_pred             EeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCC-------------ceEEE
Confidence            97665444588999999999998864211   00000000      1124578888888764             66888


Q ss_pred             eecCCcEEE---EEEeCCc-eeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeec
Q 036510          181 GGCDNTVKV---WKLYNGI-WKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHD  256 (288)
Q Consensus       181 ~~~d~~i~i---wd~~~~~-~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~  256 (288)
                      |+.+|.|.-   ++.+.+. ...+....+..|.++|.+|.++|-.   ...|++++ |-+++||+......+  ......
T Consensus       366 GTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~---~k~fls~g-DW~vriWs~~~~~~P--l~~~~~  439 (555)
T KOG1587|consen  366 GTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFY---PKNFLSVG-DWTVRIWSEDVIASP--LLSLDS  439 (555)
T ss_pred             EcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCc---cceeeeec-cceeEeccccCCCCc--chhhhh
Confidence            999998764   2222221 0112233557789999999999964   45666666 889999986522111  011112


Q ss_pred             cccCeEEEEeecCC-CEEEEEeCCCcEEEeEc
Q 036510          257 FKTPVYRVSWSLTG-NILAVADGNNNVTLWEE  287 (288)
Q Consensus       257 ~~~~i~~~~~spdg-~~l~s~~~d~~v~~w~~  287 (288)
                      ....+++++|||.- ..|++++.||++.|||+
T Consensus       440 ~~~~v~~vaWSptrpavF~~~d~~G~l~iWDL  471 (555)
T KOG1587|consen  440 SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDL  471 (555)
T ss_pred             ccceeeeeEEcCcCceEEEEEcCCCceehhhh
Confidence            23469999999976 67999999999999995

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=2.2e-14  Score=122.06  Aligned_cols=202  Identities=12%  Similarity=0.209  Sum_probs=146.7

Q ss_pred             ccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeec
Q 036510           55 KGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTAR  134 (288)
Q Consensus        55 ~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~  134 (288)
                      .+.|+++.|.|.  ..+|++++.|++++||.+.. +.-.+++.+.....+|.++.|.|++ ...+++++.-..++.||+.
T Consensus       213 ~~~I~sv~FHp~--~plllvaG~d~~lrifqvDG-k~N~~lqS~~l~~fPi~~a~f~p~G-~~~i~~s~rrky~ysyDle  288 (514)
T KOG2055|consen  213 HGGITSVQFHPT--APLLLVAGLDGTLRIFQVDG-KVNPKLQSIHLEKFPIQKAEFAPNG-HSVIFTSGRRKYLYSYDLE  288 (514)
T ss_pred             cCCceEEEecCC--CceEEEecCCCcEEEEEecC-ccChhheeeeeccCccceeeecCCC-ceEEEecccceEEEEeecc
Confidence            577999999543  67999999999999998853 3222445555667899999999984 2267888889999999997


Q ss_pred             CCCCeeeEEeeccCC-CCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceE
Q 036510          135 ADGGWDTSRIDQAHP-VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVR  213 (288)
Q Consensus       135 ~~~~~~~~~~~~~~~-~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~  213 (288)
                      +.. ...+....++. ..+..+..+|++              ++++..|..|.|.|.-..+++    .+.+++. .+.|.
T Consensus       289 ~ak-~~k~~~~~g~e~~~~e~FeVShd~--------------~fia~~G~~G~I~lLhakT~e----li~s~Ki-eG~v~  348 (514)
T KOG2055|consen  289 TAK-VTKLKPPYGVEEKSMERFEVSHDS--------------NFIAIAGNNGHIHLLHAKTKE----LITSFKI-EGVVS  348 (514)
T ss_pred             ccc-cccccCCCCcccchhheeEecCCC--------------CeEEEcccCceEEeehhhhhh----hhheeee-ccEEe
Confidence            643 22223333332 346667777776              789999999999998877653    3333332 34589


Q ss_pred             EEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          214 DVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       214 ~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      ++.|+.++    +.|++.+.+|.|.+||++.+.  +.-.-..+..-.-++++-|++|.+||+||.-|.|.|||
T Consensus       349 ~~~fsSds----k~l~~~~~~GeV~v~nl~~~~--~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd  415 (514)
T KOG2055|consen  349 DFTFSSDS----KELLASGGTGEVYVWNLRQNS--CLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYD  415 (514)
T ss_pred             eEEEecCC----cEEEEEcCCceEEEEecCCcc--eEEEEeecCccceeeeeecCCCceEEeccCcceEEEec
Confidence            99999774    678889999999999998641  11111111112347889999999999999999999998

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.64  E-value=1.3e-12  Score=113.41  Aligned_cols=237  Identities=11%  Similarity=0.076  Sum_probs=142.5

Q ss_pred             EEEeeCCCcEEEEEeCC-CCceeeEEEeccccCeEEEEecCCCCCCEEEE-eeCCCcEEEeecCCCCceEEeEEeecCCC
Q 036510           26 LATASSDYSIKIIGVGN-NTSQHLAKLSGHKGAVWEVAWAHPKFGSILAS-CSFDGTVIIWKEGNSNEWIKDHVFEDHKS  103 (288)
Q Consensus        26 l~s~~~d~~i~lwd~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s-~s~d~~v~iwd~~~~~~~~~~~~~~~h~~  103 (288)
                      +++...|+.|.+|+++. +..+.+.++. +......++++++  +++|.. +..++.|.+|++............. ...
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd--~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~   80 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPD--KRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPG   80 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCC--CCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCC
Confidence            45567899999999953 2333455554 2345677888864  676654 4568999999986322222222222 223


Q ss_pred             ceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCee-eEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEee
Q 036510          104 SVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWD-TSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGG  182 (288)
Q Consensus       104 ~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~  182 (288)
                      ....+.++|++ ..++++.-.++.|.+|++.+++... ..... .+......+.++|++.             .++++..
T Consensus        81 ~p~~i~~~~~g-~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~-------------~l~v~~~  145 (330)
T PRK11028         81 SPTHISTDHQG-RFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNR-------------TLWVPCL  145 (330)
T ss_pred             CceEEEECCCC-CEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCC-------------EEEEeeC
Confidence            45689999984 2344444458899999997543221 11111 1223456677888762             3446667


Q ss_pred             cCCcEEEEEEeCCceeeee----eeccccCCcceEEEEecCCCCCCCcEEEEEeC-CCcEEEEEeecCCCcc-cceEeec
Q 036510          183 CDNTVKVWKLYNGIWKMDC----FPALQMHTDWVRDVAWAPNLGLPKSTIASASE-DGKVIIWTVAREGDQW-EGKVLHD  256 (288)
Q Consensus       183 ~d~~i~iwd~~~~~~~~~~----~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~-D~~i~iw~~~~~~~~~-~~~~~~~  256 (288)
                      .++.|.+||+.+.. .+..    ....... ...+.+.|+|++    +++.+++. +++|.+|+++...... ....+..
T Consensus       146 ~~~~v~v~d~~~~g-~l~~~~~~~~~~~~g-~~p~~~~~~pdg----~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~  219 (330)
T PRK11028        146 KEDRIRLFTLSDDG-HLVAQEPAEVTTVEG-AGPRHMVFHPNQ----QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDM  219 (330)
T ss_pred             CCCEEEEEEECCCC-cccccCCCceecCCC-CCCceEEECCCC----CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEec
Confidence            78999999997521 1110    0011111 224678999984    56666665 9999999997421111 1111111


Q ss_pred             c------ccCeEEEEeecCCCEEEEEeC-CCcEEEeEc
Q 036510          257 F------KTPVYRVSWSLTGNILAVADG-NNNVTLWEE  287 (288)
Q Consensus       257 ~------~~~i~~~~~spdg~~l~s~~~-d~~v~~w~~  287 (288)
                      +      ......+.|+|||++++++.. +++|.+|++
T Consensus       220 ~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i  257 (330)
T PRK11028        220 MPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV  257 (330)
T ss_pred             CCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence            1      112346899999999999864 789999985

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.63  E-value=3.3e-14  Score=126.06  Aligned_cols=211  Identities=15%  Similarity=0.272  Sum_probs=152.0

Q ss_pred             CeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCC
Q 036510           57 AVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARAD  136 (288)
Q Consensus        57 ~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~  136 (288)
                      .|+.++|.|+  |..|+-+ ++..+.+||..++.   +..++++|++.|+|++|+.+  |.++|+|+.|+.+.+|..+..
T Consensus        14 ci~d~afkPD--GsqL~lA-Ag~rlliyD~ndG~---llqtLKgHKDtVycVAys~d--GkrFASG~aDK~VI~W~~klE   85 (1081)
T KOG1538|consen   14 CINDIAFKPD--GTQLILA-AGSRLLVYDTSDGT---LLQPLKGHKDTVYCVAYAKD--GKRFASGSADKSVIIWTSKLE   85 (1081)
T ss_pred             chheeEECCC--CceEEEe-cCCEEEEEeCCCcc---cccccccccceEEEEEEccC--CceeccCCCceeEEEeccccc
Confidence            7899999865  5555443 34588999998776   56789999999999999987  789999999999999987643


Q ss_pred             CCeeeEEeeccCCCCeeEEEeCCCCCCCc-------------------------eecccccCCCceeEEeecCCcEEEEE
Q 036510          137 GGWDTSRIDQAHPVGVTSVSWAPSTAPGA-------------------------LVGSGFLDPVQKLCSGGCDNTVKVWK  191 (288)
Q Consensus       137 ~~~~~~~~~~~~~~~v~~i~~~p~~~~~~-------------------------~~~~~~~~~~~~l~s~~~d~~i~iwd  191 (288)
                      +.     ..-.|++.|-|+.|+|-....+                         ...+.+-+++++|+-|..||+|.|=+
T Consensus        86 G~-----LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRN  160 (1081)
T KOG1538|consen   86 GI-----LKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRN  160 (1081)
T ss_pred             ce-----eeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeec
Confidence            32     1235888899999888653211                         11234457889999999999998865


Q ss_pred             EeCCceeeeeeeccccCCcceEEEEecCCCC-CCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCC
Q 036510          192 LYNGIWKMDCFPALQMHTDWVRDVAWAPNLG-LPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTG  270 (288)
Q Consensus       192 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~-~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg  270 (288)
                      -.. +.+. .+....|..++|++|+|+|.++ .....++..-+..++.++.++-..-  .+.  ...+-...++.+-|+|
T Consensus       161 k~g-Eek~-~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~I--gk~--r~L~FdP~CisYf~NG  234 (1081)
T KOG1538|consen  161 KNG-EEKV-KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQI--GKD--RALNFDPCCISYFTNG  234 (1081)
T ss_pred             CCC-Ccce-EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceee--ccc--ccCCCCchhheeccCC
Confidence            322 2111 1223356677899999999763 2346788888999999998763210  000  0112235678999999


Q ss_pred             CEEEEEeCCCcEEEeE
Q 036510          271 NILAVADGNNNVTLWE  286 (288)
Q Consensus       271 ~~l~s~~~d~~v~~w~  286 (288)
                      .+++.|+.|+.++++.
T Consensus       235 Ey~LiGGsdk~L~~fT  250 (1081)
T KOG1538|consen  235 EYILLGGSDKQLSLFT  250 (1081)
T ss_pred             cEEEEccCCCceEEEe
Confidence            9999999999999986

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.60  E-value=1e-12  Score=107.38  Aligned_cols=238  Identities=16%  Similarity=0.180  Sum_probs=143.2

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccC--eEEEEecCCCCCCEEEEeeC-------CCcEEE
Q 036510           13 TVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGA--VWEVAWAHPKFGSILASCSF-------DGTVII   83 (288)
Q Consensus        13 ~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~~l~s~s~-------d~~v~i   83 (288)
                      ....++|+.|-.-++. +.|.-.|+|+.+.  .+...+-.-+...  +.-+-|.    .++|+-.+.       -..|.|
T Consensus         7 ~~lsvs~NQD~ScFav-a~~~Gfriyn~~P--~ke~~~r~~~~~G~~~veMLfR----~N~laLVGGg~~pky~pNkviI   79 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAV-ATDTGFRIYNCDP--FKESASRQFIDGGFKIVEMLFR----SNYLALVGGGSRPKYPPNKVII   79 (346)
T ss_pred             ceeEEEEccCCceEEE-EecCceEEEecCc--hhhhhhhccccCchhhhhHhhh----hceEEEecCCCCCCCCCceEEE
Confidence            3445899998876654 4555679998752  1111111111111  1222221    345543332       247899


Q ss_pred             eecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCC
Q 036510           84 WKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAP  163 (288)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~  163 (288)
                      ||-....   +..++. ...+|.++.+.++   + ++. -.+++|++|...++-+..........+.+.+++  +|... 
T Consensus        80 WDD~k~~---~i~el~-f~~~I~~V~l~r~---r-iVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~--~~~~~-  147 (346)
T KOG2111|consen   80 WDDLKER---CIIELS-FNSEIKAVKLRRD---R-IVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSL--CPTSN-  147 (346)
T ss_pred             EecccCc---EEEEEE-eccceeeEEEcCC---e-EEE-EecCeEEEEEcCCChhheeeeecccCCCceEee--cCCCC-
Confidence            9944333   233333 4678999999886   2 222 357899999987432211111111234444444  23221 


Q ss_pred             CceecccccCCCceeE-EeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCc-EEEEE
Q 036510          164 GALVGSGFLDPVQKLC-SGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGK-VIIWT  241 (288)
Q Consensus       164 ~~~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~-i~iw~  241 (288)
                                 ..+|+ -|-.-|.|.|-|+.....  .....+.+|.+.|.||..+-+    +++|||+|.-|| |||||
T Consensus       148 -----------k~~LafPg~k~GqvQi~dL~~~~~--~~p~~I~AH~s~Iacv~Ln~~----Gt~vATaStkGTLIRIFd  210 (346)
T KOG2111|consen  148 -----------KSLLAFPGFKTGQVQIVDLASTKP--NAPSIINAHDSDIACVALNLQ----GTLVATASTKGTLIRIFD  210 (346)
T ss_pred             -----------ceEEEcCCCccceEEEEEhhhcCc--CCceEEEcccCceeEEEEcCC----ccEEEEeccCcEEEEEEE
Confidence                       12333 344457899999875421  012356789999999999987    589999999886 89999


Q ss_pred             eecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          242 VAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ...+....+.+.- .-.+.|++++||||.++||++|..|||+|+.+
T Consensus       211 t~~g~~l~E~RRG-~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l  255 (346)
T KOG2111|consen  211 TEDGTLLQELRRG-VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSL  255 (346)
T ss_pred             cCCCcEeeeeecC-CchheEEEEEeCCCccEEEEEcCCCeEEEEEe
Confidence            8764322111110 11357999999999999999999999999974

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=5.3e-13  Score=121.63  Aligned_cols=238  Identities=18%  Similarity=0.310  Sum_probs=161.4

Q ss_pred             EEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCC-CEEEEeeCCCcEEEeecCCCCceEEe
Q 036510           17 VAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFG-SILASCSFDGTVIIWKEGNSNEWIKD   95 (288)
Q Consensus        17 ~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~s~d~~v~iwd~~~~~~~~~~   95 (288)
                      ..||+|+++++-. .+..|.+|...  ++.++..+.+|..++..+.+.+.... .++.+++.||+|++||...+..   .
T Consensus        22 avfSnD~k~l~~~-~~~~V~VyS~~--Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L---l   95 (792)
T KOG1963|consen   22 AVFSNDAKFLFLC-TGNFVKVYSTA--TGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL---L   95 (792)
T ss_pred             cccccCCcEEEEe-eCCEEEEEecc--hHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE---E
Confidence            3589999888754 45689999874  56788899999999999998765333 5777999999999999865431   1


Q ss_pred             EEeecCCCcee-----------------------------------------------------------EEEeccCCCC
Q 036510           96 HVFEDHKSSVN-----------------------------------------------------------SIDWAPHELG  116 (288)
Q Consensus        96 ~~~~~h~~~v~-----------------------------------------------------------~l~~~p~~~~  116 (288)
                      +++..+ .++.                                                           ++..++.  +
T Consensus        96 kt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~--g  172 (792)
T KOG1963|consen   96 KTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNS--G  172 (792)
T ss_pred             EEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCC--c
Confidence            221110 0111                                                           1111211  1


Q ss_pred             eEEEEEeCCCcEEEEeecCCCC-eeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCC
Q 036510          117 LCLACGSSDGNISVFTARADGG-WDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNG  195 (288)
Q Consensus       117 ~~l~sg~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  195 (288)
                      . +..-..+..+.+|...+... .........|...+++.+++|.+              +++++|..||.|.+|.-...
T Consensus       173 e-~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~--------------~~~Aa~d~dGrI~vw~d~~~  237 (792)
T KOG1963|consen  173 E-FKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNE--------------RYLAAGDSDGRILVWRDFGS  237 (792)
T ss_pred             e-EEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecccc--------------ceEEEeccCCcEEEEecccc
Confidence            1 11112233455555543210 01111223466667778888876              88999999999999975441


Q ss_pred             ceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEE
Q 036510          196 IWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAV  275 (288)
Q Consensus       196 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s  275 (288)
                      ...-.....+.-|.+.|+++.|++++    .+|.||+..+-+.+|....++.    +.+--.+++|..+.+|||+.+.+.
T Consensus       238 ~~~~~t~t~lHWH~~~V~~L~fS~~G----~~LlSGG~E~VLv~Wq~~T~~k----qfLPRLgs~I~~i~vS~ds~~~sl  309 (792)
T KOG1963|consen  238 SDDSETCTLLHWHHDEVNSLSFSSDG----AYLLSGGREGVLVLWQLETGKK----QFLPRLGSPILHIVVSPDSDLYSL  309 (792)
T ss_pred             ccccccceEEEecccccceeEEecCC----ceEeecccceEEEEEeecCCCc----ccccccCCeeEEEEEcCCCCeEEE
Confidence            11112234567799999999999985    6899999999999999876532    333345789999999999999999


Q ss_pred             EeCCCcEEEeE
Q 036510          276 ADGNNNVTLWE  286 (288)
Q Consensus       276 ~~~d~~v~~w~  286 (288)
                      ..+|+.|++-.
T Consensus       310 ~~~DNqI~li~  320 (792)
T KOG1963|consen  310 VLEDNQIHLIK  320 (792)
T ss_pred             EecCceEEEEe
Confidence            99999999876

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.58  E-value=4.5e-13  Score=110.54  Aligned_cols=254  Identities=17%  Similarity=0.268  Sum_probs=168.0

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCC---ceeeEEEecccc------------CeEEEEecCCCCCCEEEEee
Q 036510           12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNNT---SQHLAKLSGHKG------------AVWEVAWAHPKFGSILASCS   76 (288)
Q Consensus        12 ~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~---~~~~~~~~~h~~------------~v~~~~~~~~~~~~~l~s~s   76 (288)
                      +-+.+|.|+.+|.+|++|..+|.|-++.-+...   ......++.|..            .|..++|.++.....|+...
T Consensus        26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst  105 (433)
T KOG1354|consen   26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST  105 (433)
T ss_pred             cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence            567788999999999999999999998653211   112223334442            36789998777778899999


Q ss_pred             CCCcEEEeecCCCCc--------------------------------eEEeEEe-ecCCCceeEEEeccCCCCeEEEEEe
Q 036510           77 FDGTVIIWKEGNSNE--------------------------------WIKDHVF-EDHKSSVNSIDWAPHELGLCLACGS  123 (288)
Q Consensus        77 ~d~~v~iwd~~~~~~--------------------------------~~~~~~~-~~h~~~v~~l~~~p~~~~~~l~sg~  123 (288)
                      .|++|++|-+...+.                                ..+.+.+ ..|..-|++++++.|  +..++++ 
T Consensus       106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD--~Et~lSA-  182 (433)
T KOG1354|consen  106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD--KETFLSA-  182 (433)
T ss_pred             CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc--cceEeec-
Confidence            999999997643210                                0011112 258888999999987  4445555 


Q ss_pred             CCCcEEEEeecC-CCCeeeEEeeccC-----CCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCce
Q 036510          124 SDGNISVFTARA-DGGWDTSRIDQAH-----PVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIW  197 (288)
Q Consensus       124 ~d~~i~i~d~~~-~~~~~~~~~~~~~-----~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  197 (288)
                      .|=.|.+|.+.- ++.++.+.+ +.+     +.-|++..|+|..-             ++++-++..|+|+|-|++...-
T Consensus       183 DdLRINLWnlei~d~sFnIVDI-KP~nmEeLteVITsaEFhp~~c-------------n~f~YSSSKGtIrLcDmR~~aL  248 (433)
T KOG1354|consen  183 DDLRINLWNLEIIDQSFNIVDI-KPANMEELTEVITSAEFHPHHC-------------NVFVYSSSKGTIRLCDMRQSAL  248 (433)
T ss_pred             cceeeeeccccccCCceeEEEc-cccCHHHHHHHHhhhccCHhHc-------------cEEEEecCCCcEEEeechhhhh
Confidence            566899999864 334443322 222     33477888888752             5677778899999999984210


Q ss_pred             -----e-eee------eeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeecc--------
Q 036510          198 -----K-MDC------FPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDF--------  257 (288)
Q Consensus       198 -----~-~~~------~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~--------  257 (288)
                           + ++.      ..-+..-...|.+|.|++++    .|+++-. -.+|++||+.....+.+-.++++.        
T Consensus       249 Cd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG----ryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~l  323 (433)
T KOG1354|consen  249 CDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG----RYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSL  323 (433)
T ss_pred             hcchhhhhccccCCcchhhHHHHhhhhhceEEccCC----cEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHH
Confidence                 0 000      00122334468999999974    5675432 269999999765444333334332        


Q ss_pred             -c-cCe---EEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          258 -K-TPV---YRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       258 -~-~~i---~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                       + ..|   ..++||-++.++++|+-++.+++++.
T Consensus       324 YEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~  358 (433)
T KOG1354|consen  324 YENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNL  358 (433)
T ss_pred             hhccchhheeEEEEcCCcceEecccccceEEEecC
Confidence             1 122   47899999999999999999999983

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.57  E-value=3.9e-15  Score=134.61  Aligned_cols=208  Identities=19%  Similarity=0.285  Sum_probs=139.7

Q ss_pred             eEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCc
Q 036510           48 LAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGN  127 (288)
Q Consensus        48 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~  127 (288)
                      +..|.||..+|++..|.+.  |.++++|++|..||||.+.++.   +.....+|.+.|+.++.+..  ...+++++.|..
T Consensus       183 ikrLlgH~naVyca~fDrt--g~~Iitgsdd~lvKiwS~et~~---~lAs~rGhs~ditdlavs~~--n~~iaaaS~D~v  255 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRT--GRYIITGSDDRLVKIWSMETAR---CLASCRGHSGDITDLAVSSN--NTMIAAASNDKV  255 (1113)
T ss_pred             HHHHHhhhhheeeeeeccc--cceEeecCccceeeeeeccchh---hhccCCCCccccchhccchh--hhhhhhcccCce
Confidence            4556799999999998754  9999999999999999987765   44567899999999998765  456889999999


Q ss_pred             EEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccc-
Q 036510          128 ISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQ-  206 (288)
Q Consensus       128 i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-  206 (288)
                      |++|-++.+.   ++.++.+|++.|++|+|+|..                  +.+.|+++++||.+-.... .....++ 
T Consensus       256 IrvWrl~~~~---pvsvLrghtgavtaiafsP~~------------------sss~dgt~~~wd~r~~~~~-y~prp~~~  313 (1113)
T KOG0644|consen  256 IRVWRLPDGA---PVSVLRGHTGAVTAIAFSPRA------------------SSSDDGTCRIWDARLEPRI-YVPRPLKF  313 (1113)
T ss_pred             EEEEecCCCc---hHHHHhccccceeeeccCccc------------------cCCCCCceEeccccccccc-cCCCCCCc
Confidence            9999987653   445678999999999999953                  6788999999998611000 0000000 


Q ss_pred             cCCcceEEEEecCCC---------------------------------CCCCcEEEEEeCCCcEEEEEeecCCCcccceE
Q 036510          207 MHTDWVRDVAWAPNL---------------------------------GLPKSTIASASEDGKVIIWTVAREGDQWEGKV  253 (288)
Q Consensus       207 ~h~~~V~~v~~sp~~---------------------------------~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~  253 (288)
                      .-.+-+.++.|..++                                 +-...+.+++=.+-.+++|++...+   ..-.
T Consensus       314 ~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~---l~H~  390 (1113)
T KOG0644|consen  314 TEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ---LLHN  390 (1113)
T ss_pred             ccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccch---hhhh
Confidence            000112222222211                                 0001223333334445666655321   1112


Q ss_pred             eeccccCeEEEEeecCC-CEEEEEeCCCcEEEeEc
Q 036510          254 LHDFKTPVYRVSWSLTG-NILAVADGNNNVTLWEE  287 (288)
Q Consensus       254 ~~~~~~~i~~~~~spdg-~~l~s~~~d~~v~~w~~  287 (288)
                      ..+|...++.+.+||=. .+..+++.||++.|||+
T Consensus       391 l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi  425 (1113)
T KOG0644|consen  391 LMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDI  425 (1113)
T ss_pred             hcccccceeeeeecCCCcHhhhhccCCCceEeeec
Confidence            23556788999999955 55678889999999995

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.57  E-value=2.3e-13  Score=108.56  Aligned_cols=209  Identities=19%  Similarity=0.275  Sum_probs=142.0

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceee----------------------------------------
Q 036510            9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHL----------------------------------------   48 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~----------------------------------------   48 (288)
                      .|...|+.+.--|. ..|.+=+.|..+.+|++.......+                                        
T Consensus        54 ~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D  132 (323)
T KOG0322|consen   54 FGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQD  132 (323)
T ss_pred             hccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhc
Confidence            45677777776665 4688888899999988753111000                                        


Q ss_pred             -------EEE----eccccCeEEEEecCCCCCC-EEEEeeCCCcEEEeecCCCCceE-------EeEEeecCCCceeEEE
Q 036510           49 -------AKL----SGHKGAVWEVAWAHPKFGS-ILASCSFDGTVIIWKEGNSNEWI-------KDHVFEDHKSSVNSID  109 (288)
Q Consensus        49 -------~~~----~~h~~~v~~~~~~~~~~~~-~l~s~s~d~~v~iwd~~~~~~~~-------~~~~~~~h~~~v~~l~  109 (288)
                             ...    .+..+.+.+..+.+..... +++.|-.+|.|-+||+..+...+       -......|.++|.+++
T Consensus       133 ~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsld  212 (323)
T KOG0322|consen  133 GGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLD  212 (323)
T ss_pred             cCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeee
Confidence                   000    0223445555544332122 45677789999999997753211       1122346999999999


Q ss_pred             eccCCCCeEEEEEeCCCcEEEEeecCC-CCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEE
Q 036510          110 WAPHELGLCLACGSSDGNISVFTARAD-GGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVK  188 (288)
Q Consensus       110 ~~p~~~~~~l~sg~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  188 (288)
                      +.+.-+.  =++|+.+..+..|++... +.++.....+-.+.+|..+...|++              +.++|+++|+.||
T Consensus       213 yas~~~r--Gisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~--------------KIlATAGWD~RiR  276 (323)
T KOG0322|consen  213 YASSCDR--GISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDG--------------KILATAGWDHRIR  276 (323)
T ss_pred             echhhcC--CcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCC--------------cEEeecccCCcEE
Confidence            9875322  267888889999998754 3333322222223356667777776              7899999999999


Q ss_pred             EEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEe
Q 036510          189 VWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV  242 (288)
Q Consensus       189 iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~  242 (288)
                      +|..++.    ..+..++-|+..|++|+|+|+.    ..+|++|.|..|-+|++
T Consensus       277 Vyswrtl----~pLAVLkyHsagvn~vAfspd~----~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  277 VYSWRTL----NPLAVLKYHSAGVNAVAFSPDC----ELMAAASKDARISLWKL  322 (323)
T ss_pred             EEEeccC----CchhhhhhhhcceeEEEeCCCC----chhhhccCCceEEeeec
Confidence            9998875    3456778899999999999984    47999999999999986

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.57  E-value=4.2e-14  Score=122.54  Aligned_cols=232  Identities=17%  Similarity=0.210  Sum_probs=145.1

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCcEEEE-EeCCCCceeeEEEeccccCeEEEEe------cCCCCCCEEEEeeCCCcE
Q 036510            9 GHEDTVHDVAMDYYGKRLATASSDYSIKII-GVGNNTSQHLAKLSGHKGAVWEVAW------AHPKFGSILASCSFDGTV   81 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lw-d~~~~~~~~~~~~~~h~~~v~~~~~------~~~~~~~~l~s~s~d~~v   81 (288)
                      .|...|.++.|+.....+. .+.|..+.+| ++.....+.   +.-..+.+....+      -.....+.|+.++.||.+
T Consensus        12 r~~e~vc~v~w~~~eei~~-~~dDh~~~~~~~~~~~s~~~---~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf   87 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYF-VSDDHQIFKWSDVSRDSVEV---AKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF   87 (737)
T ss_pred             ccceeEEeecccccceEEE-eccCceEEEeecccchhhhh---hhCCcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence            5777787888886665444 5555555555 453322111   1111122211111      011124689999999999


Q ss_pred             EEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCC
Q 036510           82 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPST  161 (288)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~  161 (288)
                      .|-+- .+.   .-+.+..|.+.+.|-+|+|++.  -|++.+.||.|++|.-. +   +.....-....+|.|+.|.|+.
T Consensus        88 ~il~k-~~r---VE~sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWSrs-G---MLRStl~Q~~~~v~c~~W~p~S  157 (737)
T KOG1524|consen   88 VILNK-SAR---VERSISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWSRS-G---MLRSTVVQNEESIRCARWAPNS  157 (737)
T ss_pred             EEecc-cch---hhhhhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEecc-c---hHHHHHhhcCceeEEEEECCCC
Confidence            98743 222   2245678999999999999954  47888999999999632 1   1111111234569999999987


Q ss_pred             CCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEE
Q 036510          162 APGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT  241 (288)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~  241 (288)
                      .             +.+.+.+  +.+.|=-+..+    .-+-..+.|++-|.+++|+|..    .++++|+.|-..+|||
T Consensus       158 ~-------------~vl~c~g--~h~~IKpL~~n----~k~i~WkAHDGiiL~~~W~~~s----~lI~sgGED~kfKvWD  214 (737)
T KOG1524|consen  158 N-------------SIVFCQG--GHISIKPLAAN----SKIIRWRAHDGLVLSLSWSTQS----NIIASGGEDFRFKIWD  214 (737)
T ss_pred             C-------------ceEEecC--CeEEEeecccc----cceeEEeccCcEEEEeecCccc----cceeecCCceeEEeec
Confidence            3             3344333  33443222221    1123457899999999999975    6899999999999999


Q ss_pred             eecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEE
Q 036510          242 VAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVT  283 (288)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~  283 (288)
                      ..-.  .....  ..|.-+|++++|+|| +.++++|. ++.|
T Consensus       215 ~~G~--~Lf~S--~~~ey~ITSva~npd-~~~~v~S~-nt~R  250 (737)
T KOG1524|consen  215 AQGA--NLFTS--AAEEYAITSVAFNPE-KDYLLWSY-NTAR  250 (737)
T ss_pred             ccCc--ccccC--Chhccceeeeeeccc-cceeeeee-eeee
Confidence            7532  11111  234468999999999 88888865 4444

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.57  E-value=2.6e-12  Score=120.89  Aligned_cols=257  Identities=16%  Similarity=0.138  Sum_probs=160.0

Q ss_pred             ccccceEEEEEcC-CCCEEEEeeCCCcEEEEEeCC-----CCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEE
Q 036510            9 GHEDTVHDVAMDY-YGKRLATASSDYSIKIIGVGN-----NTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVI   82 (288)
Q Consensus         9 ~h~~~v~~~~~s~-~g~~l~s~~~d~~i~lwd~~~-----~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~   82 (288)
                      -|...|..++.++ .+.+++|||.||+|++|+...     ...+...++..-...+..+..-+  .++.+|.++.||.|+
T Consensus      1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~--~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG--NGDQFAVSTKDGSVR 1123 (1431)
T ss_pred             hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc--CCCeEEEEcCCCeEE
Confidence            4677788888765 569999999999999999742     11222334433345566666543  378999999999999


Q ss_pred             EeecCCCC--ce--EEeEEeecC-CCceeE-EEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEE
Q 036510           83 IWKEGNSN--EW--IKDHVFEDH-KSSVNS-IDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVS  156 (288)
Q Consensus        83 iwd~~~~~--~~--~~~~~~~~h-~~~v~~-l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~  156 (288)
                      +.++..-+  ..  ...+....+ .+.+.. -++........++.+..-+.|..||++........+....| +.|+++.
T Consensus      1124 ~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h-G~vTSi~ 1202 (1431)
T KOG1240|consen 1124 VLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH-GLVTSIV 1202 (1431)
T ss_pred             EEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc-cceeEEE
Confidence            99886521  11  111111111 122333 33333222235677777788999999865322111211123 4699999


Q ss_pred             eCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecc-ccCCcceEEEEecCCCCCCCcEEEEEe--C
Q 036510          157 WAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPAL-QMHTDWVRDVAWAPNLGLPKSTIASAS--E  233 (288)
Q Consensus       157 ~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~~~l~s~s--~  233 (288)
                      -+|.+              .-++.|...|.+-+||++-+.    .+.+. -.+..+++.|..+|.... .+..++++  .
T Consensus      1203 idp~~--------------~WlviGts~G~l~lWDLRF~~----~i~sw~~P~~~~i~~v~~~~~~~~-~S~~vs~~~~~ 1263 (1431)
T KOG1240|consen 1203 IDPWC--------------NWLVIGTSRGQLVLWDLRFRV----PILSWEHPARAPIRHVWLCPTYPQ-ESVSVSAGSSS 1263 (1431)
T ss_pred             ecCCc--------------eEEEEecCCceEEEEEeecCc----eeecccCcccCCcceEEeeccCCC-CceEEEecccC
Confidence            99987              779999999999999998762    22232 234467888888886421 14555554  4


Q ss_pred             CCcEEEEEeecCCCcc---cc--e-------Eee----ccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          234 DGKVIIWTVAREGDQW---EG--K-------VLH----DFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       234 D~~i~iw~~~~~~~~~---~~--~-------~~~----~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      -+.|.+|+........   ..  .       +..    .+.-+...+.+..-+..+.+|+.|..||.||.
T Consensus      1264 ~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1264 NNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred             CCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence            7789999987642110   00  0       000    11112345566666778999999999999995

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=7.3e-13  Score=104.61  Aligned_cols=198  Identities=17%  Similarity=0.202  Sum_probs=127.3

Q ss_pred             eEEEEecCCCCCCEEEEeeCCCcEEEeecCCC-----Cc--eEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEE
Q 036510           58 VWEVAWAHPKFGSILASCSFDGTVIIWKEGNS-----NE--WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISV  130 (288)
Q Consensus        58 v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~-----~~--~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i  130 (288)
                      |..-+|+++  +++|+.|..+|+|.+..+...     .+  ...+....+|.++|+.++|+-+    .|++|+ ||.|+=
T Consensus        13 vf~qa~sp~--~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~----~Lls~g-dG~V~g   85 (325)
T KOG0649|consen   13 VFAQAISPS--KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD----FLLSGG-DGLVYG   85 (325)
T ss_pred             HHHHhhCCc--ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh----heeecc-CceEEE
Confidence            444567765  789999999999999987431     11  1122334579999999999843    455554 599998


Q ss_pred             EeecCCCC---eee-EE-eeccCC-----CCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeee
Q 036510          131 FTARADGG---WDT-SR-IDQAHP-----VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMD  200 (288)
Q Consensus       131 ~d~~~~~~---~~~-~~-~~~~~~-----~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  200 (288)
                      |..++...   ..+ +. ....|.     ..|.++...|..              +-+..++.|+.+..||+++|    +
T Consensus        86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e--------------nSi~~AgGD~~~y~~dlE~G----~  147 (325)
T KOG0649|consen   86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE--------------NSILFAGGDGVIYQVDLEDG----R  147 (325)
T ss_pred             eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC--------------CcEEEecCCeEEEEEEecCC----E
Confidence            87764321   000 00 000111     235666666654              44666668999999999998    4


Q ss_pred             eeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEee-------ccccCeEEEEeecCCCEE
Q 036510          201 CFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLH-------DFKTPVYRVSWSLTGNIL  273 (288)
Q Consensus       201 ~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~-------~~~~~i~~~~~spdg~~l  273 (288)
                      ...+++||+++|.+|.--..    ...+.||+.||++|+||++..+........+       ..+.+|.+++-  +...+
T Consensus       148 i~r~~rGHtDYvH~vv~R~~----~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWl  221 (325)
T KOG0649|consen  148 IQREYRGHTDYVHSVVGRNA----NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWL  221 (325)
T ss_pred             EEEEEcCCcceeeeeeeccc----CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceE
Confidence            55678999999999986332    2469999999999999998654221111111       11345666663  55566


Q ss_pred             EEEeCCCcEEEeEc
Q 036510          274 AVADGNNNVTLWEE  287 (288)
Q Consensus       274 ~s~~~d~~v~~w~~  287 (288)
                      +.|+. ..+.||.+
T Consensus       222 vCGgG-p~lslwhL  234 (325)
T KOG0649|consen  222 VCGGG-PKLSLWHL  234 (325)
T ss_pred             EecCC-CceeEEec
Confidence            66654 56778864

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=2.7e-13  Score=114.31  Aligned_cols=203  Identities=17%  Similarity=0.152  Sum_probs=134.8

Q ss_pred             EEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCC
Q 036510           59 WEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGG  138 (288)
Q Consensus        59 ~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~  138 (288)
                      ..++|+++  |..+++++.||++|||+..+-.   .......|...|.++.|+||  ++.+++-+.| ..++|+.+++..
T Consensus       148 k~vaf~~~--gs~latgg~dg~lRv~~~Ps~~---t~l~e~~~~~eV~DL~FS~d--gk~lasig~d-~~~VW~~~~g~~  219 (398)
T KOG0771|consen  148 KVVAFNGD--GSKLATGGTDGTLRVWEWPSML---TILEEIAHHAEVKDLDFSPD--GKFLASIGAD-SARVWSVNTGAA  219 (398)
T ss_pred             eEEEEcCC--CCEeeeccccceEEEEecCcch---hhhhhHhhcCccccceeCCC--CcEEEEecCC-ceEEEEeccCch
Confidence            45788764  8999999999999999943322   12234568889999999998  7788888888 899999988754


Q ss_pred             eeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCce--eeeeeeccccCCcceEEEE
Q 036510          139 WDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIW--KMDCFPALQMHTDWVRDVA  216 (288)
Q Consensus       139 ~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~h~~~V~~v~  216 (288)
                      ++.... ..-+.....+.|+-+.....+         ..++.-..-+.|+.||+..-.+  -.+..+.+..+ ..|.+++
T Consensus       220 ~a~~t~-~~k~~~~~~cRF~~d~~~~~l---------~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~-~siSsl~  288 (398)
T KOG0771|consen  220 LARKTP-FSKDEMFSSCRFSVDNAQETL---------RLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF-KSISSLA  288 (398)
T ss_pred             hhhcCC-cccchhhhhceecccCCCceE---------EEEEecCCCCceeEEEeeeeccccccchhhhhhcc-CcceeEE
Confidence            433221 122223445666555422111         1222333344566766642111  00111112222 3589999


Q ss_pred             ecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEe-eccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          217 WAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVL-HDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       217 ~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~-~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      .+++    ++++|-|+.||.|-|++..+.+-   ...+ +-|..-|+.+.|+||-+++++.+.|.+..|..+
T Consensus       289 VS~d----Gkf~AlGT~dGsVai~~~~~lq~---~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l  353 (398)
T KOG0771|consen  289 VSDD----GKFLALGTMDGSVAIYDAKSLQR---LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL  353 (398)
T ss_pred             EcCC----CcEEEEeccCCcEEEEEeceeee---eEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence            9998    47899999999999999875421   1222 235568999999999999999999999888764

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=6.7e-13  Score=111.28  Aligned_cols=227  Identities=13%  Similarity=0.162  Sum_probs=152.1

Q ss_pred             cccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccc---cCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510            8 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHK---GAVWEVAWAHPKFGSILASCSFDGTVIIW   84 (288)
Q Consensus         8 ~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~l~s~s~d~~v~iw   84 (288)
                      ..|..-|+++.|+...+.|.||+.+++|.+.|+...  +.+..+ .|.   +.|+.+..+|.  .++|++.+.++.|.+|
T Consensus       102 ~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~--qsi~V~-~~~~~~~~VY~m~~~P~--DN~~~~~t~~~~V~~~  176 (609)
T KOG4227|consen  102 HPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETK--QSIYVA-NENNNRGDVYHMDQHPT--DNTLIVVTRAKLVSFI  176 (609)
T ss_pred             CccccceEEEEEccCCeeEecCCCcceeEeeecccc--eeeeee-cccCcccceeecccCCC--CceEEEEecCceEEEE
Confidence            356789999999998999999999999999998543  334333 344   58999998653  6899999999999999


Q ss_pred             ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeee-EEeeccCCC---CeeEEEeCCC
Q 036510           85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDT-SRIDQAHPV---GVTSVSWAPS  160 (288)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~-~~~~~~~~~---~v~~i~~~p~  160 (288)
                      |.+.....+....+........++.|+|.. ..++++.+..+-+.+||.+....-.. .....+-+.   .-...-|+|.
T Consensus       177 D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~-P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~  255 (609)
T KOG4227|consen  177 DNRDRQNPISLVLPANSGKNFYTAEFHPET-PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPS  255 (609)
T ss_pred             eccCCCCCCceeeecCCCccceeeeecCCC-ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCC
Confidence            987643222222233344567889999975 67788888888899999985432000 000001111   1123445555


Q ss_pred             CCCCc---------ee-------------------------cccccCCCceeEEeecCCcEEEEEEeCC----c------
Q 036510          161 TAPGA---------LV-------------------------GSGFLDPVQKLCSGGCDNTVKVWKLYNG----I------  196 (288)
Q Consensus       161 ~~~~~---------~~-------------------------~~~~~~~~~~l~s~~~d~~i~iwd~~~~----~------  196 (288)
                      +....         ++                         ..-.+.+...++||+.+-.|.||.+-..    .      
T Consensus       256 G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~  335 (609)
T KOG4227|consen  256 GNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGH  335 (609)
T ss_pred             CCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCc
Confidence            42100         00                         0011223345899999999999998321    0      


Q ss_pred             ---------eeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510          197 ---------WKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR  244 (288)
Q Consensus       197 ---------~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~  244 (288)
                               ...+....++||.+-++-|.|+|.    ..+|++.+-.+.++||....
T Consensus       336 ~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H----~~~l~SSGVE~~~KlWS~~r  388 (609)
T KOG4227|consen  336 DEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQH----NNLLVSSGVENSFKLWSDHR  388 (609)
T ss_pred             chhhCchhheecceeEEEecccccccceeecCC----cceEeccchhhheecccccc
Confidence                     011234467899999999999997    46888888899999998754

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.49  E-value=4.5e-12  Score=101.23  Aligned_cols=109  Identities=21%  Similarity=0.438  Sum_probs=79.1

Q ss_pred             CCCeeEEEeCCCCCCCceecccccCCCce-eEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcE
Q 036510          149 PVGVTSVSWAPSTAPGALVGSGFLDPVQK-LCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKST  227 (288)
Q Consensus       149 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~  227 (288)
                      ...|.+++|+|++.             .+ ++.|..++.|.|||++.     +.+..+  +...++.|.|+|++    ++
T Consensus        59 ~~~I~~~~WsP~g~-------------~favi~g~~~~~v~lyd~~~-----~~i~~~--~~~~~n~i~wsP~G----~~  114 (194)
T PF08662_consen   59 EGPIHDVAWSPNGN-------------EFAVIYGSMPAKVTLYDVKG-----KKIFSF--GTQPRNTISWSPDG----RF  114 (194)
T ss_pred             CCceEEEEECcCCC-------------EEEEEEccCCcccEEEcCcc-----cEeEee--cCCCceEEEECCCC----CE
Confidence            34699999999973             22 34555678999999963     233333  34567899999984    78


Q ss_pred             EEEEeCC---CcEEEEEeecCCCcccceEeecc-ccCeEEEEeecCCCEEEEEeC------CCcEEEeEc
Q 036510          228 IASASED---GKVIIWTVAREGDQWEGKVLHDF-KTPVYRVSWSLTGNILAVADG------NNNVTLWEE  287 (288)
Q Consensus       228 l~s~s~D---~~i~iw~~~~~~~~~~~~~~~~~-~~~i~~~~~spdg~~l~s~~~------d~~v~~w~~  287 (288)
                      ||.|+.+   |.|.+||.+..      +.+... ...++.++|+|||++|+++..      |+.++||+.
T Consensus       115 l~~~g~~n~~G~l~~wd~~~~------~~i~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~  178 (194)
T PF08662_consen  115 LVLAGFGNLNGDLEFWDVRKK------KKISTFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF  178 (194)
T ss_pred             EEEEEccCCCcEEEEEECCCC------EEeeccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe
Confidence            8888754   56999998742      223222 235789999999999999974      788999984

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.49  E-value=1.4e-12  Score=113.30  Aligned_cols=163  Identities=21%  Similarity=0.264  Sum_probs=104.7

Q ss_pred             cceEEEEEcCCC-CEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecC-CC
Q 036510           12 DTVHDVAMDYYG-KRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEG-NS   89 (288)
Q Consensus        12 ~~v~~~~~s~~g-~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~-~~   89 (288)
                      ..|++++|-|.+ .+++.+-.++.+.+||...            ........|....++..|...       .|-.. +.
T Consensus       220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~------------~~~~t~p~~~~~k~~~~f~i~-------t~ksk~~r  280 (636)
T KOG2394|consen  220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI------------VCGATAPSYQALKDGDQFAIL-------TSKSKKTR  280 (636)
T ss_pred             cceEEEEEEeCCCceEEEEEecCceEEeeccc------------cccCCCCcccccCCCCeeEEe-------eeeccccC
Confidence            567788887743 5566666777777776521            111122222222224444321       11100 00


Q ss_pred             CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecc
Q 036510           90 NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS  169 (288)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~  169 (288)
                      +.. ....+  -.+.|+..+|+||  +.+||+.++||.+||||.....-   ...++.-=....|+.|+||+        
T Consensus       281 NPv-~~w~~--~~g~in~f~FS~D--G~~LA~VSqDGfLRvF~fdt~eL---lg~mkSYFGGLLCvcWSPDG--------  344 (636)
T KOG2394|consen  281 NPV-ARWHI--GEGSINEFAFSPD--GKYLATVSQDGFLRIFDFDTQEL---LGVMKSYFGGLLCVCWSPDG--------  344 (636)
T ss_pred             Ccc-ceeEe--ccccccceeEcCC--CceEEEEecCceEEEeeccHHHH---HHHHHhhccceEEEEEcCCc--------
Confidence            111 11112  2358899999997  78999999999999999875321   11222223568899999998        


Q ss_pred             cccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecC
Q 036510          170 GFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAP  219 (288)
Q Consensus       170 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp  219 (288)
                            +++++|++|..|.+|.+.++    +.+.-=.+|++||..|+|.|
T Consensus       345 ------KyIvtGGEDDLVtVwSf~er----RVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  345 ------KYIVTGGEDDLVTVWSFEER----RVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             ------cEEEecCCcceEEEEEeccc----eEEEeccccccceeeEeecc
Confidence                  89999999999999998765    44544579999999999998

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=6e-13  Score=114.23  Aligned_cols=259  Identities=18%  Similarity=0.217  Sum_probs=177.3

Q ss_pred             cccccccceEEEEEcCC--CCEEEEeeCCCcEEEEEeCCCC-ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEE
Q 036510            6 IETGHEDTVHDVAMDYY--GKRLATASSDYSIKIIGVGNNT-SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVI   82 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~--g~~l~s~~~d~~i~lwd~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~   82 (288)
                      ...||..-|.+.+|-|.  -+-|++++.||-+++-.+.... .+....+..|.++|+-++.-|. ....|.|++.|+.+.
T Consensus       180 f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~-sp~~f~S~geD~~v~  258 (559)
T KOG1334|consen  180 FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPD-SPKPFLSCGEDAVVF  258 (559)
T ss_pred             cccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCC-CCCccccccccccee
Confidence            45699999999999874  3679999999999998764322 2225567789999999987653 578999999999999


Q ss_pred             EeecCCCCceEEeEEeecCCC---ceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCe------e---eEEeeccCCC
Q 036510           83 IWKEGNSNEWIKDHVFEDHKS---SVNSIDWAPHELGLCLACGSSDGNISVFTARADGGW------D---TSRIDQAHPV  150 (288)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~~---~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~------~---~~~~~~~~~~  150 (288)
                      -.|++...........+.+..   ..++++.+|.+ ..++++|+.|..+++||.+.-..-      .   +.+.....+.
T Consensus       259 ~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n-t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v  337 (559)
T KOG1334|consen  259 HIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN-TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPV  337 (559)
T ss_pred             eeeeccCCccceeeeeccCCccceeeeeEecCCCC-ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcc
Confidence            999876543222222233333   46788888875 457899999999999998752110      1   1111223456


Q ss_pred             CeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCc---------eeeeeeeccccCCc--ceEEEEecC
Q 036510          151 GVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGI---------WKMDCFPALQMHTD--WVRDVAWAP  219 (288)
Q Consensus       151 ~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---------~~~~~~~~~~~h~~--~V~~v~~sp  219 (288)
                      .|+++.++.++.             .+|++- .|..|.++.-.-+.         ...-..+.++||.+  .|..|.|--
T Consensus       338 ~ITgl~Ysh~~s-------------ElLaSY-nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfG  403 (559)
T KOG1334|consen  338 NITGLVYSHDGS-------------ELLASY-NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFG  403 (559)
T ss_pred             cceeEEecCCcc-------------ceeeee-cccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeecc
Confidence            788998886652             344444 46677777432110         00112223688977  488887754


Q ss_pred             CCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          220 NLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       220 ~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      -.   ..+++|||+=|.|.||+-...+.   ...+.+-...|+++.=+|--..||+.+.|..|+||-
T Consensus       404 Pr---sEyVvSGSDCGhIFiW~K~t~ei---i~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWT  464 (559)
T KOG1334|consen  404 PR---SEYVVSGSDCGHIFIWDKKTGEI---IRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWT  464 (559)
T ss_pred             Cc---cceEEecCccceEEEEecchhHH---HHHhhcccceEeccCCCCCCchhhccCCccceeeec
Confidence            21   36899999999999998543211   122222233789999999999999999999999995

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.46  E-value=1.6e-11  Score=107.60  Aligned_cols=243  Identities=14%  Similarity=0.212  Sum_probs=152.7

Q ss_pred             ccccceEEEEEcCCCCEE-EEeeCCCcEEEEEeCCCCcee----------e----------------EEEeccccC----
Q 036510            9 GHEDTVHDVAMDYYGKRL-ATASSDYSIKIIGVGNNTSQH----------L----------------AKLSGHKGA----   57 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l-~s~~~d~~i~lwd~~~~~~~~----------~----------------~~~~~h~~~----   57 (288)
                      .|...-+.++.+|||+|+ ++|-+-..|++||+..-..+.          +                +++.-|...    
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            567777889999999985 556678899999985321100          0                111111100    


Q ss_pred             -------eEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEE
Q 036510           58 -------VWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISV  130 (288)
Q Consensus        58 -------v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i  130 (288)
                             -.+++++.+  ..-|..++....|.-.++..+. +  ...+..-...++++..++-  ..++++|+.+|.+..
T Consensus       129 ~~RIP~~GRDm~y~~~--scDly~~gsg~evYRlNLEqGr-f--L~P~~~~~~~lN~v~in~~--hgLla~Gt~~g~VEf  201 (703)
T KOG2321|consen  129 RTRIPKFGRDMKYHKP--SCDLYLVGSGSEVYRLNLEQGR-F--LNPFETDSGELNVVSINEE--HGLLACGTEDGVVEF  201 (703)
T ss_pred             eeecCcCCccccccCC--CccEEEeecCcceEEEEccccc-c--ccccccccccceeeeecCc--cceEEecccCceEEE
Confidence                   123444332  2334445555666666776543 2  2234444578999999986  567999999999999


Q ss_pred             EeecCCCCeeeEEee---ccCCC-----CeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeee
Q 036510          131 FTARADGGWDTSRID---QAHPV-----GVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCF  202 (288)
Q Consensus       131 ~d~~~~~~~~~~~~~---~~~~~-----~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  202 (288)
                      ||.|...........   ..|+.     .|+++.|+-++              -.++.|..+|.+.|||++...    .+
T Consensus       202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g--------------L~~aVGts~G~v~iyDLRa~~----pl  263 (703)
T KOG2321|consen  202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG--------------LHVAVGTSTGSVLIYDLRASK----PL  263 (703)
T ss_pred             ecchhhhhheeeecccccCCCccccccCcceEEEecCCc--------------eeEEeeccCCcEEEEEcccCC----ce
Confidence            999875443332221   12333     38888887654              568899999999999998753    11


Q ss_pred             eccccCCc--ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCC
Q 036510          203 PALQMHTD--WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNN  280 (288)
Q Consensus       203 ~~~~~h~~--~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~  280 (288)
                       -...|..  +|..+.|.+...  ...|+| .+-..++|||....+....    -+....++.+++-|++-+|.+|-.+.
T Consensus       264 -~~kdh~~e~pi~~l~~~~~~~--q~~v~S-~Dk~~~kiWd~~~Gk~~as----iEpt~~lND~C~~p~sGm~f~Ane~~  335 (703)
T KOG2321|consen  264 -LVKDHGYELPIKKLDWQDTDQ--QNKVVS-MDKRILKIWDECTGKPMAS----IEPTSDLNDFCFVPGSGMFFTANESS  335 (703)
T ss_pred             -eecccCCccceeeecccccCC--CceEEe-cchHHhhhcccccCCceee----ccccCCcCceeeecCCceEEEecCCC
Confidence             1234544  689999988631  233433 3345799999765322111    12234688999999999999987766


Q ss_pred             cEEE
Q 036510          281 NVTL  284 (288)
Q Consensus       281 ~v~~  284 (288)
                      .+.-
T Consensus       336 ~m~~  339 (703)
T KOG2321|consen  336 KMHT  339 (703)
T ss_pred             ccee
Confidence            5543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=1e-10  Score=105.30  Aligned_cols=205  Identities=13%  Similarity=0.146  Sum_probs=126.7

Q ss_pred             CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeC---CCcEEEeecCCCCceEEeEEeecCCCceeEEE
Q 036510           33 YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSF---DGTVIIWKEGNSNEWIKDHVFEDHKSSVNSID  109 (288)
Q Consensus        33 ~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~  109 (288)
                      ..|.++|.++   .....+..|...+...+|+++  |+.|+..+.   +..|.+||+.++..    ..+..+.+.+.+.+
T Consensus       182 ~~l~~~d~dg---~~~~~lt~~~~~v~~p~wSpD--G~~lay~s~~~g~~~i~~~dl~~g~~----~~l~~~~g~~~~~~  252 (435)
T PRK05137        182 KRLAIMDQDG---ANVRYLTDGSSLVLTPRFSPN--RQEITYMSYANGRPRVYLLDLETGQR----ELVGNFPGMTFAPR  252 (435)
T ss_pred             eEEEEECCCC---CCcEEEecCCCCeEeeEECCC--CCEEEEEEecCCCCEEEEEECCCCcE----EEeecCCCcccCcE
Confidence            3677777643   334566778889999999975  788887763   57899999976542    23444566778899


Q ss_pred             eccCCCCeEEEEEeCCCc--EEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEee-cCC-
Q 036510          110 WAPHELGLCLACGSSDGN--ISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGG-CDN-  185 (288)
Q Consensus       110 ~~p~~~~~~l~sg~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~-~d~-  185 (288)
                      |+|++ ..++++.+.++.  |++||+..+..    .....+........|+|++              +.++..+ .++ 
T Consensus       253 ~SPDG-~~la~~~~~~g~~~Iy~~d~~~~~~----~~Lt~~~~~~~~~~~spDG--------------~~i~f~s~~~g~  313 (435)
T PRK05137        253 FSPDG-RKVVMSLSQGGNTDIYTMDLRSGTT----TRLTDSPAIDTSPSYSPDG--------------SQIVFESDRSGS  313 (435)
T ss_pred             ECCCC-CEEEEEEecCCCceEEEEECCCCce----EEccCCCCccCceeEcCCC--------------CEEEEEECCCCC
Confidence            99984 334455666665  66667654321    2223344445678999987              4444333 333 


Q ss_pred             -cEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCC---CcEEEEEeecCCCcccceEeeccccCe
Q 036510          186 -TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASED---GKVIIWTVAREGDQWEGKVLHDFKTPV  261 (288)
Q Consensus       186 -~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D---~~i~iw~~~~~~~~~~~~~~~~~~~~i  261 (288)
                       .|.++|+..+..  +   .+..+...+....|+|++    ++|+..+.+   ..|.+|++....    ...+.. ...+
T Consensus       314 ~~Iy~~d~~g~~~--~---~lt~~~~~~~~~~~SpdG----~~ia~~~~~~~~~~i~~~d~~~~~----~~~lt~-~~~~  379 (435)
T PRK05137        314 PQLYVMNADGSNP--R---RISFGGGRYSTPVWSPRG----DLIAFTKQGGGQFSIGVMKPDGSG----ERILTS-GFLV  379 (435)
T ss_pred             CeEEEEECCCCCe--E---EeecCCCcccCeEECCCC----CEEEEEEcCCCceEEEEEECCCCc----eEeccC-CCCC
Confidence             577777655421  1   222233445678899985    567766543   357777764321    122221 2245


Q ss_pred             EEEEeecCCCEEEEEeCC
Q 036510          262 YRVSWSLTGNILAVADGN  279 (288)
Q Consensus       262 ~~~~~spdg~~l~s~~~d  279 (288)
                      ....|+|||+.|+..+.+
T Consensus       380 ~~p~~spDG~~i~~~~~~  397 (435)
T PRK05137        380 EGPTWAPNGRVIMFFRQT  397 (435)
T ss_pred             CCCeECCCCCEEEEEEcc
Confidence            678999999998876553

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.44  E-value=6.5e-13  Score=113.42  Aligned_cols=231  Identities=16%  Similarity=0.210  Sum_probs=161.5

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCce
Q 036510           13 TVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEW   92 (288)
Q Consensus        13 ~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~   92 (288)
                      +-+.+.++.+|++|+-|+.-|.+..+|+...  .+...+.- ...|.++.|.|.   ..+.....-..+.|||- .+.+ 
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~--~L~~Ei~v-~Etv~Dv~~LHn---eq~~AVAQK~y~yvYD~-~GtE-  202 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTK--KLHFEINV-METVRDVTFLHN---EQFFAVAQKKYVYVYDN-NGTE-  202 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccc--eeeeeeeh-hhhhhhhhhhcc---hHHHHhhhhceEEEecC-CCcE-
Confidence            3467788999999999999999999998432  33333322 456888999874   44555666788999985 3443 


Q ss_pred             EEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceeccccc
Q 036510           93 IKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFL  172 (288)
Q Consensus        93 ~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~  172 (288)
                        .+-++.| ..|..++|-|.  -.+|++++..|.+..-|+..+.......   .-...+..+.-+|..           
T Consensus       203 --lHClk~~-~~v~rLeFLPy--HfLL~~~~~~G~L~Y~DVS~GklVa~~~---t~~G~~~vm~qNP~N-----------  263 (545)
T KOG1272|consen  203 --LHCLKRH-IRVARLEFLPY--HFLLVAASEAGFLKYQDVSTGKLVASIR---TGAGRTDVMKQNPYN-----------  263 (545)
T ss_pred             --Eeehhhc-Cchhhhcccch--hheeeecccCCceEEEeechhhhhHHHH---ccCCccchhhcCCcc-----------
Confidence              2334444 57999999997  5788999999999988887664322111   112334555556654           


Q ss_pred             CCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccce
Q 036510          173 DPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGK  252 (288)
Q Consensus       173 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~  252 (288)
                         ..+.+|...|+|.+|.....    +.+..+..|.++|++|++.|+    +.|.||.+.|..++|||++.-.+.   .
T Consensus       264 ---aVih~GhsnGtVSlWSP~sk----ePLvKiLcH~g~V~siAv~~~----G~YMaTtG~Dr~~kIWDlR~~~ql---~  329 (545)
T KOG1272|consen  264 ---AVIHLGHSNGTVSLWSPNSK----EPLVKILCHRGPVSSIAVDRG----GRYMATTGLDRKVKIWDLRNFYQL---H  329 (545)
T ss_pred             ---ceEEEcCCCceEEecCCCCc----chHHHHHhcCCCcceEEECCC----CcEEeecccccceeEeeecccccc---c
Confidence               46789999999999986553    334456779999999999997    489999999999999999854221   1


Q ss_pred             EeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          253 VLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       253 ~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      .+.. .-+...++||..|-..++  --..|.||..
T Consensus       330 t~~t-p~~a~~ls~SqkglLA~~--~G~~v~iw~d  361 (545)
T KOG1272|consen  330 TYRT-PHPASNLSLSQKGLLALS--YGDHVQIWKD  361 (545)
T ss_pred             eeec-CCCccccccccccceeee--cCCeeeeehh
Confidence            1111 235677888877765433  3367889974

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.42  E-value=7.2e-10  Score=92.55  Aligned_cols=198  Identities=14%  Similarity=0.176  Sum_probs=129.8

Q ss_pred             ccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEee---cCCCceeEEEeccCCCCeEEEE-E-eCCCcEE
Q 036510           55 KGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFE---DHKSSVNSIDWAPHELGLCLAC-G-SSDGNIS  129 (288)
Q Consensus        55 ~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~---~h~~~v~~l~~~p~~~~~~l~s-g-~~d~~i~  129 (288)
                      ..+|.+++..+    +.|+.+=.+. |.|+|+++=.   ..+++.   .+...+.++++++.  +-++|- + ...|.|.
T Consensus        87 pt~IL~VrmNr----~RLvV~Lee~-IyIydI~~Mk---lLhTI~t~~~n~~gl~AlS~n~~--n~ylAyp~s~t~GdV~  156 (391)
T KOG2110|consen   87 PTSILAVRMNR----KRLVVCLEES-IYIYDIKDMK---LLHTIETTPPNPKGLCALSPNNA--NCYLAYPGSTTSGDVV  156 (391)
T ss_pred             CCceEEEEEcc----ceEEEEEccc-EEEEecccce---eehhhhccCCCccceEeeccCCC--CceEEecCCCCCceEE
Confidence            44677777753    3555555544 9999987533   344442   34444555555443  334442 2 3457899


Q ss_pred             EEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCc-EEEEEEeCCceeeeeeeccc-c
Q 036510          130 VFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNT-VKVWKLYNGIWKMDCFPALQ-M  207 (288)
Q Consensus       130 i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~-~  207 (288)
                      +||..+   +.+.....+|...+-+++|+|++              .+|+|+|+.|+ ||++.+.+|+..    .+++ |
T Consensus       157 l~d~~n---l~~v~~I~aH~~~lAalafs~~G--------------~llATASeKGTVIRVf~v~~G~kl----~eFRRG  215 (391)
T KOG2110|consen  157 LFDTIN---LQPVNTINAHKGPLAALAFSPDG--------------TLLATASEKGTVIRVFSVPEGQKL----YEFRRG  215 (391)
T ss_pred             EEEccc---ceeeeEEEecCCceeEEEECCCC--------------CEEEEeccCceEEEEEEcCCccEe----eeeeCC
Confidence            999865   33445566999999999999998              78999999998 779999888532    2332 2


Q ss_pred             C-CcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccc-----eE----------------e-----------
Q 036510          208 H-TDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEG-----KV----------------L-----------  254 (288)
Q Consensus       208 h-~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~-----~~----------------~-----------  254 (288)
                      - .-.|.+++|+|++    ++|++.|.-++|++|++.........     ..                +           
T Consensus       216 ~~~~~IySL~Fs~ds----~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FA  291 (391)
T KOG2110|consen  216 TYPVSIYSLSFSPDS----QFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFA  291 (391)
T ss_pred             ceeeEEEEEEECCCC----CeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhcccee
Confidence            2 3358999999985    68999999999999999753210000     00                0           


Q ss_pred             --eccccCe-EEEEee--cCCCEEEEEeCCCcEEEeEc
Q 036510          255 --HDFKTPV-YRVSWS--LTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       255 --~~~~~~i-~~~~~s--pdg~~l~s~~~d~~v~~w~~  287 (288)
                        +-..+.. ..+.+.  +..+++.+++.||.+..|.+
T Consensus       292 t~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l  329 (391)
T KOG2110|consen  292 TAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRL  329 (391)
T ss_pred             EEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEc
Confidence              0001111 345555  47889999999999998874

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=1.7e-10  Score=103.54  Aligned_cols=210  Identities=19%  Similarity=0.232  Sum_probs=125.4

Q ss_pred             CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC---CcEEEeecCCCCceEEeEEeecCCCceeEEE
Q 036510           33 YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD---GTVIIWKEGNSNEWIKDHVFEDHKSSVNSID  109 (288)
Q Consensus        33 ~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~  109 (288)
                      ..+.++|.++   .....+..+...+.+.+|+|+  |+.|+..+.+   ..|.+||+.++..    ..+....+.+.+.+
T Consensus       176 ~~L~~~D~dG---~~~~~l~~~~~~v~~p~wSPD--G~~la~~s~~~~~~~I~~~dl~~g~~----~~l~~~~g~~~~~~  246 (427)
T PRK02889        176 YQLQISDADG---QNAQSALSSPEPIISPAWSPD--GTKLAYVSFESKKPVVYVHDLATGRR----RVVANFKGSNSAPA  246 (427)
T ss_pred             cEEEEECCCC---CCceEeccCCCCcccceEcCC--CCEEEEEEccCCCcEEEEEECCCCCE----EEeecCCCCccceE
Confidence            3455555543   334455677888999999875  7888877643   4599999876542    12333344567899


Q ss_pred             eccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeE-EeecCCcEE
Q 036510          110 WAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLC-SGGCDNTVK  188 (288)
Q Consensus       110 ~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~  188 (288)
                      |+|++ ..++++.+.++...||.+......  ......+........|+|++              +.|+ ++..++...
T Consensus       247 ~SPDG-~~la~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG--------------~~l~f~s~~~g~~~  309 (427)
T PRK02889        247 WSPDG-RTLAVALSRDGNSQIYTVNADGSG--LRRLTQSSGIDTEPFFSPDG--------------RSIYFTSDRGGAPQ  309 (427)
T ss_pred             ECCCC-CEEEEEEccCCCceEEEEECCCCC--cEECCCCCCCCcCeEEcCCC--------------CEEEEEecCCCCcE
Confidence            99984 344446677887777765432211  12222334445678899997              4444 443456677


Q ss_pred             EEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCC---cEEEEEeecCCCcccceEeeccccCeEEEE
Q 036510          189 VWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG---KVIIWTVAREGDQWEGKVLHDFKTPVYRVS  265 (288)
Q Consensus       189 iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~---~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~  265 (288)
                      ||.+.......+.+ ...+  .......|+|++    ++|+..+.++   .|.+||+....    ...+.. ........
T Consensus       310 Iy~~~~~~g~~~~l-t~~g--~~~~~~~~SpDG----~~Ia~~s~~~g~~~I~v~d~~~g~----~~~lt~-~~~~~~p~  377 (427)
T PRK02889        310 IYRMPASGGAAQRV-TFTG--SYNTSPRISPDG----KLLAYISRVGGAFKLYVQDLATGQ----VTALTD-TTRDESPS  377 (427)
T ss_pred             EEEEECCCCceEEE-ecCC--CCcCceEECCCC----CEEEEEEccCCcEEEEEEECCCCC----eEEccC-CCCccCce
Confidence            77764221111111 1222  233467899984    6787776554   69999986432    122222 12345789


Q ss_pred             eecCCCEEEEEeCCC
Q 036510          266 WSLTGNILAVADGNN  280 (288)
Q Consensus       266 ~spdg~~l~s~~~d~  280 (288)
                      |+|||+.|+.++.++
T Consensus       378 ~spdg~~l~~~~~~~  392 (427)
T PRK02889        378 FAPNGRYILYATQQG  392 (427)
T ss_pred             ECCCCCEEEEEEecC
Confidence            999999988887544

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=3.1e-10  Score=101.94  Aligned_cols=212  Identities=16%  Similarity=0.161  Sum_probs=126.3

Q ss_pred             CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEee---CCCcEEEeecCCCCceEEeEEeecCCCceeEEE
Q 036510           33 YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCS---FDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSID  109 (288)
Q Consensus        33 ~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~  109 (288)
                      ..+.++|.++..   ...+..+...+...+|+|+  |+.|+..+   .+..+.+|++..+..    ..+....+.+..+.
T Consensus       179 ~~l~~~d~dg~~---~~~lt~~~~~~~~p~wSPD--G~~la~~s~~~g~~~i~i~dl~~G~~----~~l~~~~~~~~~~~  249 (429)
T PRK03629        179 YELRVSDYDGYN---QFVVHRSPQPLMSPAWSPD--GSKLAYVTFESGRSALVIQTLANGAV----RQVASFPRHNGAPA  249 (429)
T ss_pred             eeEEEEcCCCCC---CEEeecCCCceeeeEEcCC--CCEEEEEEecCCCcEEEEEECCCCCe----EEccCCCCCcCCeE
Confidence            368888876432   2334556778899999975  78887654   345788999865431    12222333456789


Q ss_pred             eccCCCCeEEEEEeCCC--cEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEee-cCCc
Q 036510          110 WAPHELGLCLACGSSDG--NISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGG-CDNT  186 (288)
Q Consensus       110 ~~p~~~~~~l~sg~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~-~d~~  186 (288)
                      |+|++ ..++.+.+.++  .|++||+..+..    .....+...+....|+|++              +.|+..+ .++.
T Consensus       250 ~SPDG-~~La~~~~~~g~~~I~~~d~~tg~~----~~lt~~~~~~~~~~wSPDG--------------~~I~f~s~~~g~  310 (429)
T PRK03629        250 FSPDG-SKLAFALSKTGSLNLYVMDLASGQI----RQVTDGRSNNTEPTWFPDS--------------QNLAYTSDQAGR  310 (429)
T ss_pred             ECCCC-CEEEEEEcCCCCcEEEEEECCCCCE----EEccCCCCCcCceEECCCC--------------CEEEEEeCCCCC
Confidence            99984 23333444455  588888865422    1222233456788999997              4454444 3445


Q ss_pred             EEEEEE--eCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCC---CcEEEEEeecCCCcccceEeeccccCe
Q 036510          187 VKVWKL--YNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASED---GKVIIWTVAREGDQWEGKVLHDFKTPV  261 (288)
Q Consensus       187 i~iwd~--~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D---~~i~iw~~~~~~~~~~~~~~~~~~~~i  261 (288)
                      ..||.+  .++.  .+   .+..+...+....|+|++    ++|+..+.+   ..|.+||+....    ...+... ...
T Consensus       311 ~~Iy~~d~~~g~--~~---~lt~~~~~~~~~~~SpDG----~~Ia~~~~~~g~~~I~~~dl~~g~----~~~Lt~~-~~~  376 (429)
T PRK03629        311 PQVYKVNINGGA--PQ---RITWEGSQNQDADVSSDG----KFMVMVSSNGGQQHIAKQDLATGG----VQVLTDT-FLD  376 (429)
T ss_pred             ceEEEEECCCCC--eE---EeecCCCCccCEEECCCC----CEEEEEEccCCCceEEEEECCCCC----eEEeCCC-CCC
Confidence            566644  3432  11   222233345678999985    567666543   357788875432    1222221 123


Q ss_pred             EEEEeecCCCEEEEEeCCCc---EEEeE
Q 036510          262 YRVSWSLTGNILAVADGNNN---VTLWE  286 (288)
Q Consensus       262 ~~~~~spdg~~l~s~~~d~~---v~~w~  286 (288)
                      ....|+|||++|+.++.++.   +.+++
T Consensus       377 ~~p~~SpDG~~i~~~s~~~~~~~l~~~~  404 (429)
T PRK03629        377 ETPSIAPNGTMVIYSSSQGMGSVLNLVS  404 (429)
T ss_pred             CCceECCCCCEEEEEEcCCCceEEEEEE
Confidence            46789999999999998765   45554

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.41  E-value=4.4e-11  Score=95.54  Aligned_cols=112  Identities=18%  Similarity=0.478  Sum_probs=79.9

Q ss_pred             CCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEe
Q 036510          102 KSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSG  181 (288)
Q Consensus       102 ~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~  181 (288)
                      .++|..++|+|++....++.|..++.+.+||++..    ...  .-+...+..|.|+|++              ++|+.+
T Consensus        59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~----~i~--~~~~~~~n~i~wsP~G--------------~~l~~~  118 (194)
T PF08662_consen   59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGK----KIF--SFGTQPRNTISWSPDG--------------RFLVLA  118 (194)
T ss_pred             CCceEEEEECcCCCEEEEEEccCCcccEEEcCccc----EeE--eecCCCceEEEECCCC--------------CEEEEE
Confidence            45799999999864444555667789999998621    111  1234567889999998              778877


Q ss_pred             ecC---CcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeC------CCcEEEEEee
Q 036510          182 GCD---NTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE------DGKVIIWTVA  243 (288)
Q Consensus       182 ~~d---~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~------D~~i~iw~~~  243 (288)
                      +.+   |.|.+||+++.    +.+.... |. .+..++|+|++    ++|+++..      |+.++||+.+
T Consensus       119 g~~n~~G~l~~wd~~~~----~~i~~~~-~~-~~t~~~WsPdG----r~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  119 GFGNLNGDLEFWDVRKK----KKISTFE-HS-DATDVEWSPDG----RYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             EccCCCcEEEEEECCCC----EEeeccc-cC-cEEEEEEcCCC----CEEEEEEeccceeccccEEEEEec
Confidence            654   45999999864    3343332 33 37899999985    67887764      8899999875

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=1.5e-10  Score=103.91  Aligned_cols=220  Identities=17%  Similarity=0.154  Sum_probs=129.2

Q ss_pred             cccccceEEEEEcCCCCEEEEeeC---CCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEe-eCCC--cE
Q 036510            8 TGHEDTVHDVAMDYYGKRLATASS---DYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASC-SFDG--TV   81 (288)
Q Consensus         8 ~~h~~~v~~~~~s~~g~~l~s~~~---d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-s~d~--~v   81 (288)
                      +.+...+...+|+|||+.|+-.+.   +..+.+|++..+..+.+..+.+|   +..++|+|+  |+.|+.. +.++  .|
T Consensus       195 t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~---~~~~~~SPD--G~~La~~~~~~g~~~I  269 (429)
T PRK03629        195 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH---NGAPAFSPD--GSKLAFALSKTGSLNL  269 (429)
T ss_pred             ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC---cCCeEECCC--CCEEEEEEcCCCCcEE
Confidence            345667888999999999886543   45688888865443444444444   446789875  7777644 4455  47


Q ss_pred             EEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEe-CCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCC
Q 036510           82 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGS-SDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPS  160 (288)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~  160 (288)
                      .+||+.++..    ..+..+...+....|+|+  +..++..+ .++...||.+...... . .....+........|+|+
T Consensus       270 ~~~d~~tg~~----~~lt~~~~~~~~~~wSPD--G~~I~f~s~~~g~~~Iy~~d~~~g~-~-~~lt~~~~~~~~~~~SpD  341 (429)
T PRK03629        270 YVMDLASGQI----RQVTDGRSNNTEPTWFPD--SQNLAYTSDQAGRPQVYKVNINGGA-P-QRITWEGSQNQDADVSSD  341 (429)
T ss_pred             EEEECCCCCE----EEccCCCCCcCceEECCC--CCEEEEEeCCCCCceEEEEECCCCC-e-EEeecCCCCccCEEECCC
Confidence            7888865431    223334456788999998  44454444 3455566644322111 1 111122233456889998


Q ss_pred             CCCCceecccccCCCceeEEeec-C--CcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCc-
Q 036510          161 TAPGALVGSGFLDPVQKLCSGGC-D--NTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGK-  236 (288)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~s~~~-d--~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~-  236 (288)
                      +              +.++..+. +  ..|.+||+.++..  +.+.  ..+  ...+..|+||+    ++|+.++.|+. 
T Consensus       342 G--------------~~Ia~~~~~~g~~~I~~~dl~~g~~--~~Lt--~~~--~~~~p~~SpDG----~~i~~~s~~~~~  397 (429)
T PRK03629        342 G--------------KFMVMVSSNGGQQHIAKQDLATGGV--QVLT--DTF--LDETPSIAPNG----TMVIYSSSQGMG  397 (429)
T ss_pred             C--------------CEEEEEEccCCCceEEEEECCCCCe--EEeC--CCC--CCCCceECCCC----CEEEEEEcCCCc
Confidence            7              44544332 2  3477888876631  2221  111  23467899984    67888888775 


Q ss_pred             --EEEEEeecCCCcccceEeeccccCeEEEEeec
Q 036510          237 --VIIWTVAREGDQWEGKVLHDFKTPVYRVSWSL  268 (288)
Q Consensus       237 --i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~sp  268 (288)
                        +.++++...    ....+..+.+.+...+|+|
T Consensus       398 ~~l~~~~~~G~----~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        398 SVLNLVSTDGR----FKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             eEEEEEECCCC----CeEECccCCCCcCCcccCC
Confidence              455554321    1233445556778888887

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.41  E-value=1.9e-08  Score=87.85  Aligned_cols=254  Identities=12%  Similarity=0.121  Sum_probs=150.9

Q ss_pred             EEEEEcCCCCEEEEeeC----CCcEEEEEeCCC--CceeeEEEeccccCeEEEEecCCCCCCEEEEee-CCCcEEEeecC
Q 036510           15 HDVAMDYYGKRLATASS----DYSIKIIGVGNN--TSQHLAKLSGHKGAVWEVAWAHPKFGSILASCS-FDGTVIIWKEG   87 (288)
Q Consensus        15 ~~~~~s~~g~~l~s~~~----d~~i~lwd~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~d~~v~iwd~~   87 (288)
                      .-++++|++++|.+...    ++.|..|.++..  ..+.+.+.......-..++.+++  +++|+.+. .+|+|.++++.
T Consensus        40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~--g~~l~vany~~g~v~v~~l~  117 (345)
T PF10282_consen   40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPD--GRFLYVANYGGGSVSVFPLD  117 (345)
T ss_dssp             CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTT--SSEEEEEETTTTEEEEEEEC
T ss_pred             ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecC--CCEEEEEEccCCeEEEEEcc
Confidence            34678999999988877    468888988653  22334443322334467888754  67776665 59999999997


Q ss_pred             CCCceEEe-EEee----------cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCC-CeeeEEee-ccCCCCeeE
Q 036510           88 NSNEWIKD-HVFE----------DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADG-GWDTSRID-QAHPVGVTS  154 (288)
Q Consensus        88 ~~~~~~~~-~~~~----------~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~-~~~~~~~~-~~~~~~v~~  154 (288)
                      ........ ..+.          .......++.++|++ ..++++.-....|.+|++.... .+...... ......-+.
T Consensus       118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg-~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh  196 (345)
T PF10282_consen  118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG-RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH  196 (345)
T ss_dssp             TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS-SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred             CCcccceeeeecccCCCCCcccccccccceeEEECCCC-CEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence            64332221 1111          012346789999984 3344444334589999997653 23322211 223456788


Q ss_pred             EEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeee---ccc-cC--CcceEEEEecCCCCCCCcEE
Q 036510          155 VSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFP---ALQ-MH--TDWVRDVAWAPNLGLPKSTI  228 (288)
Q Consensus       155 i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~-~h--~~~V~~v~~sp~~~~~~~~l  228 (288)
                      +.|+|++.             ...+....+++|.++++......++.+.   .+. +.  ......+.++|++   ..+.
T Consensus       197 ~~f~pdg~-------------~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg---~~ly  260 (345)
T PF10282_consen  197 LAFSPDGK-------------YAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDG---RFLY  260 (345)
T ss_dssp             EEE-TTSS-------------EEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTS---SEEE
T ss_pred             EEEcCCcC-------------EEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCC---CEEE
Confidence            99999873             3456677788899999983211222222   221 11  1256889999985   2345


Q ss_pred             EEEeCCCcEEEEEeecCC-CcccceEeeccccCeEEEEeecCCCEEEEEe-CCCcEEEeEc
Q 036510          229 ASASEDGKVIIWTVAREG-DQWEGKVLHDFKTPVYRVSWSLTGNILAVAD-GNNNVTLWEE  287 (288)
Q Consensus       229 ~s~s~D~~i~iw~~~~~~-~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~-~d~~v~~w~~  287 (288)
                      |+--..++|.+|++.... .......+.........++++|+|++|+++. .+++|.+|++
T Consensus       261 vsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~  321 (345)
T PF10282_consen  261 VSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI  321 (345)
T ss_dssp             EEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred             EEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence            555568899999995432 1211122222234578999999999999887 4578999874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=1.6e-10  Score=104.06  Aligned_cols=212  Identities=13%  Similarity=0.174  Sum_probs=127.0

Q ss_pred             CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeC---CCcEEEeecCCCCceEEeEEeecCCCceeEEE
Q 036510           33 YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSF---DGTVIIWKEGNSNEWIKDHVFEDHKSSVNSID  109 (288)
Q Consensus        33 ~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~  109 (288)
                      .+|.+||.++.   ....+..|...+...+|+++  |+.|+..+.   +..+.+|++..+..    ..+..+.+...+.+
T Consensus       184 ~~l~i~D~~g~---~~~~lt~~~~~v~~p~wSpD--g~~la~~s~~~~~~~l~~~dl~~g~~----~~l~~~~g~~~~~~  254 (433)
T PRK04922        184 YALQVADSDGY---NPQTILRSAEPILSPAWSPD--GKKLAYVSFERGRSAIYVQDLATGQR----ELVASFRGINGAPS  254 (433)
T ss_pred             EEEEEECCCCC---CceEeecCCCccccccCCCC--CCEEEEEecCCCCcEEEEEECCCCCE----EEeccCCCCccCce
Confidence            45888887543   34456667778999999875  888887774   34699999876542    22333344556789


Q ss_pred             eccCCCCeEEEEEeCCC--cEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEee-cCCc
Q 036510          110 WAPHELGLCLACGSSDG--NISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGG-CDNT  186 (288)
Q Consensus       110 ~~p~~~~~~l~sg~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~-~d~~  186 (288)
                      |+|++ ..++++.+.++  .|++||+..+..    .....+........|+|++              +.|+..+ .++.
T Consensus       255 ~SpDG-~~l~~~~s~~g~~~Iy~~d~~~g~~----~~lt~~~~~~~~~~~spDG--------------~~l~f~sd~~g~  315 (433)
T PRK04922        255 FSPDG-RRLALTLSRDGNPEIYVMDLGSRQL----TRLTNHFGIDTEPTWAPDG--------------KSIYFTSDRGGR  315 (433)
T ss_pred             ECCCC-CEEEEEEeCCCCceEEEEECCCCCe----EECccCCCCccceEECCCC--------------CEEEEEECCCCC
Confidence            99985 33444555555  588888865432    1222333344678999987              4454433 4444


Q ss_pred             --EEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCC---cEEEEEeecCCCcccceEeeccccCe
Q 036510          187 --VKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG---KVIIWTVAREGDQWEGKVLHDFKTPV  261 (288)
Q Consensus       187 --i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~---~i~iw~~~~~~~~~~~~~~~~~~~~i  261 (288)
                        |.++|+.++..  +.+   ..+........|+|++    ++|+..+.++   .|.+||+....    ...+.. ....
T Consensus       316 ~~iy~~dl~~g~~--~~l---t~~g~~~~~~~~SpDG----~~Ia~~~~~~~~~~I~v~d~~~g~----~~~Lt~-~~~~  381 (433)
T PRK04922        316 PQIYRVAASGGSA--ERL---TFQGNYNARASVSPDG----KKIAMVHGSGGQYRIAVMDLSTGS----VRTLTP-GSLD  381 (433)
T ss_pred             ceEEEEECCCCCe--EEe---ecCCCCccCEEECCCC----CEEEEEECCCCceeEEEEECCCCC----eEECCC-CCCC
Confidence              44455544421  111   1122334578999985    5677665432   58899875432    122222 1234


Q ss_pred             EEEEeecCCCEEEEEeCC---CcEEEeE
Q 036510          262 YRVSWSLTGNILAVADGN---NNVTLWE  286 (288)
Q Consensus       262 ~~~~~spdg~~l~s~~~d---~~v~~w~  286 (288)
                      ....|+|||++|+..+.+   +.+.+++
T Consensus       382 ~~p~~spdG~~i~~~s~~~g~~~L~~~~  409 (433)
T PRK04922        382 ESPSFAPNGSMVLYATREGGRGVLAAVS  409 (433)
T ss_pred             CCceECCCCCEEEEEEecCCceEEEEEE
Confidence            567999999998887653   2455554

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.39  E-value=4.2e-11  Score=99.65  Aligned_cols=190  Identities=20%  Similarity=0.306  Sum_probs=126.7

Q ss_pred             cCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecC
Q 036510           56 GAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA  135 (288)
Q Consensus        56 ~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~  135 (288)
                      -.+..++|.+.  =..|+.+..|-.|++++-.. ++....  ...-...|+|++|-|-. +..++.|+..| |-+|....
T Consensus        99 ~dlr~~aWhqH--~~~fava~nddvVriy~kss-t~pt~L--ks~sQrnvtclawRPls-aselavgCr~g-IciW~~s~  171 (445)
T KOG2139|consen   99 IDLRGVAWHQH--IIAFAVATNDDVVRIYDKSS-TCPTKL--KSVSQRNVTCLAWRPLS-ASELAVGCRAG-ICIWSDSR  171 (445)
T ss_pred             cceeeEeechh--hhhhhhhccCcEEEEeccCC-CCCcee--cchhhcceeEEEeccCC-cceeeeeecce-eEEEEcCc
Confidence            34677888642  35678999999999998654 322111  12234579999999975 45678888766 66997754


Q ss_pred             CCCeeeE-----------EeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeec-CCcEEEEEEeCCceeeeeee
Q 036510          136 DGGWDTS-----------RIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC-DNTVKVWKLYNGIWKMDCFP  203 (288)
Q Consensus       136 ~~~~~~~-----------~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~  203 (288)
                      .......           ....+| ..|+++.|++++              ..+++++. |..|.|||..+++.    +.
T Consensus       172 tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dg--------------t~l~tAS~gsssi~iWdpdtg~~----~p  232 (445)
T KOG2139|consen  172 TLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDG--------------TILVTASFGSSSIMIWDPDTGQK----IP  232 (445)
T ss_pred             ccccccccccccccchhheeCCCC-ceeeEEEEcCCC--------------CEEeecccCcceEEEEcCCCCCc----cc
Confidence            3222111           112344 579999999997              56777766 45699999988742    11


Q ss_pred             ccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeC
Q 036510          204 ALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADG  278 (288)
Q Consensus       204 ~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~  278 (288)
                      -..-..+.+.-+.||||+    .+|.++.-|+..++|+...   .+..+.-.-..+.|....|+|+|++|+-+..
T Consensus       233 L~~~glgg~slLkwSPdg----d~lfaAt~davfrlw~e~q---~wt~erw~lgsgrvqtacWspcGsfLLf~~s  300 (445)
T KOG2139|consen  233 LIPKGLGGFSLLKWSPDG----DVLFAATCDAVFRLWQENQ---SWTKERWILGSGRVQTACWSPCGSFLLFACS  300 (445)
T ss_pred             ccccCCCceeeEEEcCCC----CEEEEecccceeeeehhcc---cceecceeccCCceeeeeecCCCCEEEEEEc
Confidence            111223447889999985    6899999999999996543   2222222222347899999999998776654

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.38  E-value=1.7e-10  Score=96.94  Aligned_cols=225  Identities=15%  Similarity=0.131  Sum_probs=146.3

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCC--ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC--CcEEEeec
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNT--SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD--GTVIIWKE   86 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d--~~v~iwd~   86 (288)
                      ++.|.+++.. +| .|++|-.+|.+++|....+.  ...+.-+..+ ..+..+.-. +....++++|+.-  ..++|||+
T Consensus       105 ~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~-~~~p~Iva~GGke~~n~lkiwdl  180 (412)
T KOG3881|consen  105 TKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQT-DTDPYIVATGGKENINELKIWDL  180 (412)
T ss_pred             cccccchhhc-CC-EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccC-CCCCceEecCchhcccceeeeec
Confidence            3444444333 35 57778889999999875322  1223333333 446666654 4457788899998  99999998


Q ss_pred             CCCCceEEeEEeec---------CCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEe
Q 036510           87 GNSNEWIKDHVFED---------HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSW  157 (288)
Q Consensus        87 ~~~~~~~~~~~~~~---------h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~  157 (288)
                      .+..   ++..-+.         -.-.++.+.|-|......+|+++.-+.+++||++.++.  ++........++.++..
T Consensus       181 e~~~---qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR--PV~~fd~~E~~is~~~l  255 (412)
T KOG3881|consen  181 EQSK---QIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR--PVAQFDFLENPISSTGL  255 (412)
T ss_pred             ccce---eeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc--ceeEeccccCcceeeee
Confidence            7643   1211111         11135567787654456799999999999999986542  12111122334666666


Q ss_pred             CCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcE
Q 036510          158 APSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKV  237 (288)
Q Consensus       158 ~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i  237 (288)
                      .|.+              +++++|..-+.+..+|++.+.   -....+.+-.+.|+++..+|..    .++|+++-|+.+
T Consensus       256 ~p~g--------------n~Iy~gn~~g~l~~FD~r~~k---l~g~~~kg~tGsirsih~hp~~----~~las~GLDRyv  314 (412)
T KOG3881|consen  256 TPSG--------------NFIYTGNTKGQLAKFDLRGGK---LLGCGLKGITGSIRSIHCHPTH----PVLASCGLDRYV  314 (412)
T ss_pred             cCCC--------------cEEEEecccchhheecccCce---eeccccCCccCCcceEEEcCCC----ceEEeeccceeE
Confidence            5654              889999999999999999863   1233478888899999999974    589999999999


Q ss_pred             EEEEeecCCCcccceEeecc-ccCeEEEEeecCC
Q 036510          238 IIWTVAREGDQWEGKVLHDF-KTPVYRVSWSLTG  270 (288)
Q Consensus       238 ~iw~~~~~~~~~~~~~~~~~-~~~i~~~~~spdg  270 (288)
                      ||+|++..+.     +.+.+ +..++++-+.++-
T Consensus       315 RIhD~ktrkl-----l~kvYvKs~lt~il~~~~~  343 (412)
T KOG3881|consen  315 RIHDIKTRKL-----LHKVYVKSRLTFILLRDDV  343 (412)
T ss_pred             EEeecccchh-----hhhhhhhccccEEEecCCc
Confidence            9999986321     11111 3456666665543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.37  E-value=6.8e-11  Score=99.23  Aligned_cols=247  Identities=11%  Similarity=0.130  Sum_probs=163.0

Q ss_pred             ccceEEEEEcCCC--CEEEEeeCCCcEEEEEeCCCCcee----eEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510           11 EDTVHDVAMDYYG--KRLATASSDYSIKIIGVGNNTSQH----LAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW   84 (288)
Q Consensus        11 ~~~v~~~~~s~~g--~~l~s~~~d~~i~lwd~~~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw   84 (288)
                      ...|..+.|..++  ..|...+.|..+..+.........    +.+...-..+|..+...    ...|++|-.+|.+.+|
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~----dg~Litc~~sG~l~~~  130 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA----DGTLITCVSSGNLQVR  130 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc----CCEEEEEecCCcEEEE
Confidence            3567777776554  445555577777776654321111    12334456777777764    3578888999999999


Q ss_pred             ecCCCCc--eEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC--CcEEEEeecCCCCeeeEEee--------ccCCCCe
Q 036510           85 KEGNSNE--WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD--GNISVFTARADGGWDTSRID--------QAHPVGV  152 (288)
Q Consensus        85 d~~~~~~--~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d--~~i~i~d~~~~~~~~~~~~~--------~~~~~~v  152 (288)
                      ....+..  -++. .+..+ ..+..+.-+|.. ...+|+|+..  +.+.|||+....  +.+.--        .--+.-+
T Consensus       131 ~~k~~d~hss~l~-~la~g-~g~~~~r~~~~~-p~Iva~GGke~~n~lkiwdle~~~--qiw~aKNvpnD~L~LrVPvW~  205 (412)
T KOG3881|consen  131 HDKSGDLHSSKLI-KLATG-PGLYDVRQTDTD-PYIVATGGKENINELKIWDLEQSK--QIWSAKNVPNDRLGLRVPVWI  205 (412)
T ss_pred             eccCCccccccce-eeecC-CceeeeccCCCC-CceEecCchhcccceeeeecccce--eeeeccCCCCccccceeeeee
Confidence            8874331  1111 12222 345556555542 4578889988  899999997542  111100        0012234


Q ss_pred             eEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEe
Q 036510          153 TSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASAS  232 (288)
Q Consensus       153 ~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s  232 (288)
                      +.+.|-|...            .+.|++++.-+.+++||.+.+-++   +..+.--..+|.++..-|.    +++|.+|.
T Consensus       206 tdi~Fl~g~~------------~~~fat~T~~hqvR~YDt~~qRRP---V~~fd~~E~~is~~~l~p~----gn~Iy~gn  266 (412)
T KOG3881|consen  206 TDIRFLEGSP------------NYKFATITRYHQVRLYDTRHQRRP---VAQFDFLENPISSTGLTPS----GNFIYTGN  266 (412)
T ss_pred             ccceecCCCC------------CceEEEEecceeEEEecCcccCcc---eeEeccccCcceeeeecCC----CcEEEEec
Confidence            4555544421            367999999999999999875433   3333334556899998886    47899999


Q ss_pred             CCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          233 EDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       233 ~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      .-+.+..||++....  -+..+++..+.|.++..+|.++++|+++.|+.|||+|.
T Consensus       267 ~~g~l~~FD~r~~kl--~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~  319 (412)
T KOG3881|consen  267 TKGQLAKFDLRGGKL--LGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDI  319 (412)
T ss_pred             ccchhheecccCcee--eccccCCccCCcceEEEcCCCceEEeeccceeEEEeec
Confidence            999999999986432  12334566788999999999999999999999999995

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.36  E-value=2.1e-10  Score=108.40  Aligned_cols=223  Identities=18%  Similarity=0.216  Sum_probs=141.3

Q ss_pred             CCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCC----CCceEEeEEeecCCCceeEEEeccCCCCeE
Q 036510           43 NTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN----SNEWIKDHVFEDHKSSVNSIDWAPHELGLC  118 (288)
Q Consensus        43 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~----~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~  118 (288)
                      .++..+..+..|...+..++-+++ ++.+|+|||.||+||+|+.+.    +.......++......+.++...+.  +..
T Consensus      1036 p~G~lVAhL~Ehs~~v~k~a~s~~-~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~--~~~ 1112 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSE-HTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN--GDQ 1112 (1431)
T ss_pred             ccceEeehhhhccccccceeecCC-CCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC--CCe
Confidence            346778889999999999998865 468999999999999999753    1222233344445677888887776  667


Q ss_pred             EEEEeCCCcEEEEeecCCC--CeeeE--EeeccC-CCCeeEE-EeCCCCCCCceecccccCCCceeEEeecCCcEEEEEE
Q 036510          119 LACGSSDGNISVFTARADG--GWDTS--RIDQAH-PVGVTSV-SWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKL  192 (288)
Q Consensus       119 l~sg~~d~~i~i~d~~~~~--~~~~~--~~~~~~-~~~v~~i-~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  192 (288)
                      +|.++.||.|++.++....  .....  +....+ .+.+.++ .+....            ....++.+..-+.|..||+
T Consensus      1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~------------~S~~lvy~T~~~~iv~~D~ 1180 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIV------------QSHVLVYATDLSRIVSWDT 1180 (1431)
T ss_pred             EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccc------------cceeEEEEEeccceEEecc
Confidence            8999999999998876421  11100  011111 1112222 111100            0125777777788999999


Q ss_pred             eCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCC--
Q 036510          193 YNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTG--  270 (288)
Q Consensus       193 ~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg--  270 (288)
                      +.....-..  ...-..+.|++++.+|.    .+.++.|..-|.+.+||++-+..  ...--+++..+|..+..+|--  
T Consensus      1181 r~~~~~w~l--k~~~~hG~vTSi~idp~----~~WlviGts~G~l~lWDLRF~~~--i~sw~~P~~~~i~~v~~~~~~~~ 1252 (1431)
T KOG1240|consen 1181 RMRHDAWRL--KNQLRHGLVTSIVIDPW----CNWLVIGTSRGQLVLWDLRFRVP--ILSWEHPARAPIRHVWLCPTYPQ 1252 (1431)
T ss_pred             hhhhhHHhh--hcCccccceeEEEecCC----ceEEEEecCCceEEEEEeecCce--eecccCcccCCcceEEeeccCCC
Confidence            764110000  11223456999999996    47899999999999999984311  111113445678777777643  


Q ss_pred             -CEEEEE-e-CCCcEEEeEcC
Q 036510          271 -NILAVA-D-GNNNVTLWEEA  288 (288)
Q Consensus       271 -~~l~s~-~-~d~~v~~w~~~  288 (288)
                       ...+++ + ..+.|.+|+++
T Consensus      1253 ~S~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1253 ESVSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred             CceEEEecccCCCceeeeecc
Confidence             344444 3 57889999863

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.36  E-value=4.1e-12  Score=110.37  Aligned_cols=95  Identities=24%  Similarity=0.361  Sum_probs=79.4

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN   90 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~   90 (288)
                      ++.|...+|+|||++||+.|.|+.+||+|.+..  +++..+...-+.+.+++||+|  |+++++|++|--|.||.+....
T Consensus       290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~--eLlg~mkSYFGGLLCvcWSPD--GKyIvtGGEDDLVtVwSf~erR  365 (636)
T KOG2394|consen  290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ--ELLGVMKSYFGGLLCVCWSPD--GKYIVTGGEDDLVTVWSFEERR  365 (636)
T ss_pred             cccccceeEcCCCceEEEEecCceEEEeeccHH--HHHHHHHhhccceEEEEEcCC--ccEEEecCCcceEEEEEeccce
Confidence            457888999999999999999999999998643  556666667788999999975  9999999999999999986543


Q ss_pred             ceEEeEEeecCCCceeEEEecc
Q 036510           91 EWIKDHVFEDHKSSVNSIDWAP  112 (288)
Q Consensus        91 ~~~~~~~~~~h~~~v~~l~~~p  112 (288)
                         .+.--.+|+..|..|+|.|
T Consensus       366 ---VVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  366 ---VVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             ---EEEeccccccceeeEeecc
Confidence               2222357999999999987

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.35  E-value=6.7e-11  Score=95.95  Aligned_cols=203  Identities=19%  Similarity=0.244  Sum_probs=137.6

Q ss_pred             EEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEe
Q 036510           16 DVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKD   95 (288)
Q Consensus        16 ~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~   95 (288)
                      ++.|++.|..++++-.+|.+.+-+.+....+.++..++|.-.+|...|+.. +.+++.+||+|+.+.-||++..++++-.
T Consensus       126 slD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~-~pnlvytGgDD~~l~~~D~R~p~~~i~~  204 (339)
T KOG0280|consen  126 SLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDK-EPNLVYTGGDDGSLSCWDIRIPKTFIWH  204 (339)
T ss_pred             EEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccC-CCceEEecCCCceEEEEEecCCcceeee
Confidence            445777888888888888877433333334456678999999999999853 4689999999999999999965554332


Q ss_pred             EEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCC
Q 036510           96 HVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPV  175 (288)
Q Consensus        96 ~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~  175 (288)
                      . .+.|...|.++.=+|. .+.++++|+.|-.|++||.|+.++   ......-.++|.+|.+.|...            .
T Consensus       205 n-~kvH~~GV~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~k---Pl~~~~v~GGVWRi~~~p~~~------------~  267 (339)
T KOG0280|consen  205 N-SKVHTSGVVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGK---PLFKAKVGGGVWRIKHHPEIF------------H  267 (339)
T ss_pred             c-ceeeecceEEEecCCC-CCceEEEeccccceeeeehhcccC---ccccCccccceEEEEecchhh------------h
Confidence            2 2347788999887765 467899999999999999996532   111122347899999999763            1


Q ss_pred             ceeEEeecCCcEEEEEEeCCceee-eeeeccccCCcceEEEEecCCCCCCCcEEEEEeC-CCcEE-EEE
Q 036510          176 QKLCSGGCDNTVKVWKLYNGIWKM-DCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE-DGKVI-IWT  241 (288)
Q Consensus       176 ~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~-D~~i~-iw~  241 (288)
                      .+|+.+...| .+|-++..+.-++ ......+.|.+-+..-+|...    ...|||+|. |+.++ +|-
T Consensus       268 ~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~----~~~lATCsFYDk~~~~~Wl  331 (339)
T KOG0280|consen  268 RLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSK----DSFLATCSFYDKKIRQLWL  331 (339)
T ss_pred             HHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccc----cceeeeeeccccceeeeee
Confidence            2344443333 5555655432221 133445677776666677321    356899885 77755 773

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.35  E-value=1.6e-10  Score=95.63  Aligned_cols=211  Identities=17%  Similarity=0.243  Sum_probs=139.3

Q ss_pred             ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEe-CCC-CceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510            7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGV-GNN-TSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW   84 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~-~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw   84 (288)
                      ..||.+.|+....-|...-+.+.+.|.++|+|-- +.. ..+.+..+  -..++..+.+.+.  ...|+.+-..|++.=+
T Consensus        20 ~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~--mP~~~~~~~y~~e--~~~L~vg~~ngtvtef   95 (404)
T KOG1409|consen   20 IEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY--MPSPCSAMEYVSE--SRRLYVGQDNGTVTEF   95 (404)
T ss_pred             hcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhh--CCCCceEeeeecc--ceEEEEEEecceEEEE
Confidence            3499999999887777777999999999999953 211 11222222  2355777887653  6788888888998877


Q ss_pred             ecCCC-CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCC-------------------------
Q 036510           85 KEGNS-NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGG-------------------------  138 (288)
Q Consensus        85 d~~~~-~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~-------------------------  138 (288)
                      ..... +.....+....|..++..+-|+-.  ...+++.+.|..+.---.+.+..                         
T Consensus        96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~--~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~  173 (404)
T KOG1409|consen   96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLT--HEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDH  173 (404)
T ss_pred             EhhhhhhhcchhhhhhhhhcceeeEEecCC--ceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccc
Confidence            65321 111122334467788888877643  33455556665553222221111                         


Q ss_pred             -------------eeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecc
Q 036510          139 -------------WDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPAL  205 (288)
Q Consensus       139 -------------~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  205 (288)
                                   ..+.....+|...+.++.|.|..              .+|.+|..|..+.+||+-...   .....+
T Consensus       174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~--------------~~LfSg~~d~~vi~wdigg~~---g~~~el  236 (404)
T KOG1409|consen  174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQ--------------RLLFSGASDHSVIMWDIGGRK---GTAYEL  236 (404)
T ss_pred             ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCC--------------cEEEeccccCceEEEeccCCc---ceeeee
Confidence                         11222344566667777776654              678999999999999985432   234567


Q ss_pred             ccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510          206 QMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR  244 (288)
Q Consensus       206 ~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~  244 (288)
                      .+|.+.|..++..+.    ...+.|++.|+.|.+|+.+-
T Consensus       237 ~gh~~kV~~l~~~~~----t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  237 QGHNDKVQALSYAQH----TRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             ccchhhhhhhhhhhh----heeeeeccCCCeEEEEeccc
Confidence            899999999988775    36799999999999999864

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=4.8e-10  Score=100.67  Aligned_cols=225  Identities=18%  Similarity=0.175  Sum_probs=129.0

Q ss_pred             cccccceEEEEEcCCCCEEEEeeCC---CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEE-EeeCCCcEEE
Q 036510            8 TGHEDTVHDVAMDYYGKRLATASSD---YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILA-SCSFDGTVII   83 (288)
Q Consensus         8 ~~h~~~v~~~~~s~~g~~l~s~~~d---~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~s~d~~v~i   83 (288)
                      ..+...+.+.+|+|||+.|+..+.+   ..|.+||+..+....   +....+.+...+|+++  |+.|+ +.+.++...|
T Consensus       192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~---l~~~~g~~~~~~~SPD--G~~la~~~~~~g~~~I  266 (427)
T PRK02889        192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV---VANFKGSNSAPAWSPD--GRTLAVALSRDGNSQI  266 (427)
T ss_pred             ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE---eecCCCCccceEECCC--CCEEEEEEccCCCceE
Confidence            3566788889999999998877753   348888986543222   3333445567899875  66665 6788888888


Q ss_pred             eecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEE-EEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCC
Q 036510           84 WKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLA-CGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTA  162 (288)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~-sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~  162 (288)
                      |.+.....  ....+..+........|+|++  ..++ +...++...+|.+.............  ........|+|++ 
T Consensus       267 y~~d~~~~--~~~~lt~~~~~~~~~~wSpDG--~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~--g~~~~~~~~SpDG-  339 (427)
T PRK02889        267 YTVNADGS--GLRRLTQSSGIDTEPFFSPDG--RSIYFTSDRGGAPQIYRMPASGGAAQRVTFT--GSYNTSPRISPDG-  339 (427)
T ss_pred             EEEECCCC--CcEECCCCCCCCcCeEEcCCC--CEEEEEecCCCCcEEEEEECCCCceEEEecC--CCCcCceEECCCC-
Confidence            86532211  122344455556678899984  4444 34445677777765322111111111  2223457899987 


Q ss_pred             CCceecccccCCCceeEEeecCC---cEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCC-cEE
Q 036510          163 PGALVGSGFLDPVQKLCSGGCDN---TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG-KVI  238 (288)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~-~i~  238 (288)
                                   +.++..+.++   .|.+||+.++..  +.   +..+ .......|+|++    ++|+.++.++ .-.
T Consensus       340 -------------~~Ia~~s~~~g~~~I~v~d~~~g~~--~~---lt~~-~~~~~p~~spdg----~~l~~~~~~~g~~~  396 (427)
T PRK02889        340 -------------KLLAYISRVGGAFKLYVQDLATGQV--TA---LTDT-TRDESPSFAPNG----RYILYATQQGGRSV  396 (427)
T ss_pred             -------------CEEEEEEccCCcEEEEEEECCCCCe--EE---ccCC-CCccCceECCCC----CEEEEEEecCCCEE
Confidence                         5555444333   589999877631  11   1111 234678999985    5677766544 333


Q ss_pred             EEEeecCCCcccceEeeccccCeEEEEeecC
Q 036510          239 IWTVAREGDQWEGKVLHDFKTPVYRVSWSLT  269 (288)
Q Consensus       239 iw~~~~~~~~~~~~~~~~~~~~i~~~~~spd  269 (288)
                      ++-+...+.  ....+....+.+...+|+|-
T Consensus       397 l~~~~~~g~--~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        397 LAAVSSDGR--IKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             EEEEECCCC--ceEEeecCCCCCCCCccCCC
Confidence            443332211  11222233345666788773

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.34  E-value=2.2e-10  Score=93.03  Aligned_cols=240  Identities=17%  Similarity=0.188  Sum_probs=155.5

Q ss_pred             CCC-EEEEeeCCCcEEEEEeCCCC-ceeeEEEeccccCe---EEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeE
Q 036510           22 YGK-RLATASSDYSIKIIGVGNNT-SQHLAKLSGHKGAV---WEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDH   96 (288)
Q Consensus        22 ~g~-~l~s~~~d~~i~lwd~~~~~-~~~~~~~~~h~~~v---~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~   96 (288)
                      +|. .|+-+-.+|.|.++..+... ...+..+..-...+   -++.|+.  .+..++++-.+|.+.+-+.... ......
T Consensus        83 ~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~--~~~~i~vs~s~G~~~~v~~t~~-~le~vq  159 (339)
T KOG0280|consen   83 DGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDIST--SGTKIFVSDSRGSISGVYETEM-VLEKVQ  159 (339)
T ss_pred             CccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeec--cCceEEEEcCCCcEEEEeccee-eeeecc
Confidence            455 56667778889988764221 11122233333233   3566764  3677888888899885433221 122334


Q ss_pred             EeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCc
Q 036510           97 VFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQ  176 (288)
Q Consensus        97 ~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~  176 (288)
                      .++.|..+++.+.|+-.+ ..++.+|+.|+.++-||+|-+..+ .++..+.|..+|.+|.-+|..+             .
T Consensus       160 ~wk~He~E~Wta~f~~~~-pnlvytGgDD~~l~~~D~R~p~~~-i~~n~kvH~~GV~SI~ss~~~~-------------~  224 (339)
T KOG0280|consen  160 TWKVHEFEAWTAKFSDKE-PNLVYTGGDDGSLSCWDIRIPKTF-IWHNSKVHTSGVVSIYSSPPKP-------------T  224 (339)
T ss_pred             cccccceeeeeeecccCC-CceEEecCCCceEEEEEecCCcce-eeecceeeecceEEEecCCCCC-------------c
Confidence            678899999999998665 467899999999999999955433 3444567899999999887653             6


Q ss_pred             eeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcc--cceEe
Q 036510          177 KLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQW--EGKVL  254 (288)
Q Consensus       177 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~--~~~~~  254 (288)
                      +++||+.|.+|++||.+.=.   +.+.. ..-.+.|+.+.++|..   ...|+.+..-+-.+|-+.+.+....  .....
T Consensus       225 ~I~TGsYDe~i~~~DtRnm~---kPl~~-~~v~GGVWRi~~~p~~---~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~  297 (339)
T KOG0280|consen  225 YIATGSYDECIRVLDTRNMG---KPLFK-AKVGGGVWRIKHHPEI---FHRLLAACMHNGAKILDSSDKVLEFQIVLPSD  297 (339)
T ss_pred             eEEEeccccceeeeehhccc---Ccccc-CccccceEEEEecchh---hhHHHHHHHhcCceEEEecccccchheeeecc
Confidence            89999999999999988521   11111 1123569999999963   2345566666667777776543221  11222


Q ss_pred             eccccCeEEEEeecCCCEEEEEeC-CCcEE-EeE
Q 036510          255 HDFKTPVYRVSWSLTGNILAVADG-NNNVT-LWE  286 (288)
Q Consensus       255 ~~~~~~i~~~~~spdg~~l~s~~~-d~~v~-~w~  286 (288)
                      +.|.+-.+...|......||+++. |+.++ +|-
T Consensus       298 ~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl  331 (339)
T KOG0280|consen  298 KIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWL  331 (339)
T ss_pred             ccccceeeccccccccceeeeeeccccceeeeee
Confidence            345566677777555677888764 67744 774

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.33  E-value=8.6e-09  Score=84.70  Aligned_cols=180  Identities=15%  Similarity=0.223  Sum_probs=119.7

Q ss_pred             CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEecc
Q 036510           33 YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAP  112 (288)
Q Consensus        33 ~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p  112 (288)
                      ..+.|||-  ...+++..+. ...+|.++..+++    .++..- .+.|.||...+...  +.+.+..-.+|=--++..|
T Consensus        75 NkviIWDD--~k~~~i~el~-f~~~I~~V~l~r~----riVvvl-~~~I~VytF~~n~k--~l~~~et~~NPkGlC~~~~  144 (346)
T KOG2111|consen   75 NKVIIWDD--LKERCIIELS-FNSEIKAVKLRRD----RIVVVL-ENKIYVYTFPDNPK--LLHVIETRSNPKGLCSLCP  144 (346)
T ss_pred             ceEEEEec--ccCcEEEEEE-eccceeeEEEcCC----eEEEEe-cCeEEEEEcCCChh--heeeeecccCCCceEeecC
Confidence            56999983  2234555554 4678999998753    444433 47899998763321  2333321111111233445


Q ss_pred             CCCCeEEEE-EeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCc-EEEE
Q 036510          113 HELGLCLAC-GSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNT-VKVW  190 (288)
Q Consensus       113 ~~~~~~l~s-g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~-i~iw  190 (288)
                      .....+||. |-.-|.|+|-|+..... ......++|...|.++..+-++              .+++|+|..|+ ||||
T Consensus       145 ~~~k~~LafPg~k~GqvQi~dL~~~~~-~~p~~I~AH~s~Iacv~Ln~~G--------------t~vATaStkGTLIRIF  209 (346)
T KOG2111|consen  145 TSNKSLLAFPGFKTGQVQIVDLASTKP-NAPSIINAHDSDIACVALNLQG--------------TLVATASTKGTLIRIF  209 (346)
T ss_pred             CCCceEEEcCCCccceEEEEEhhhcCc-CCceEEEcccCceeEEEEcCCc--------------cEEEEeccCcEEEEEE
Confidence            433334443 34558999998865321 1345667999999999998877              78999999998 7899


Q ss_pred             EEeCCceeeeeeeccc-c-CCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510          191 KLYNGIWKMDCFPALQ-M-HTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE  245 (288)
Q Consensus       191 d~~~~~~~~~~~~~~~-~-h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~  245 (288)
                      |..++.    .+++++ | ....|.+++|||+.    ++||.+|+-||++|+.++..
T Consensus       210 dt~~g~----~l~E~RRG~d~A~iy~iaFSp~~----s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  210 DTEDGT----LLQELRRGVDRADIYCIAFSPNS----SWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             EcCCCc----EeeeeecCCchheEEEEEeCCCc----cEEEEEcCCCeEEEEEeecC
Confidence            999884    334442 2 23359999999985    78999999999999999863

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.33  E-value=6.1e-10  Score=92.87  Aligned_cols=234  Identities=20%  Similarity=0.271  Sum_probs=145.5

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN   90 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~   90 (288)
                      +-.+..++|.+--..++++..|.+|++|+-.......+  -...+..|.+++|.|. .+..|+.|.. +-|+||......
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~L--ks~sQrnvtclawRPl-saselavgCr-~gIciW~~s~tl  173 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKL--KSVSQRNVTCLAWRPL-SASELAVGCR-AGICIWSDSRTL  173 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCcee--cchhhcceeEEEeccC-Ccceeeeeec-ceeEEEEcCccc
Confidence            34566778888666689999999999998643211111  1234567999999754 4555665554 678999753211


Q ss_pred             ce-----------EEeEEeecCCCceeEEEeccCCCCeEEEEEeC-CCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeC
Q 036510           91 EW-----------IKDHVFEDHKSSVNSIDWAPHELGLCLACGSS-DGNISVFTARADGGWDTSRIDQAHPVGVTSVSWA  158 (288)
Q Consensus        91 ~~-----------~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~  158 (288)
                      ..           ..+...++| .+|+++.|++|  +..+++++. |..|+|||..++..... .  .-...++.-+.||
T Consensus       174 n~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~d--gt~l~tAS~gsssi~iWdpdtg~~~pL-~--~~glgg~slLkwS  247 (445)
T KOG2139|consen  174 NANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNED--GTILVTASFGSSSIMIWDPDTGQKIPL-I--PKGLGGFSLLKWS  247 (445)
T ss_pred             ccccccccccccchhheeCCCC-ceeeEEEEcCC--CCEEeecccCcceEEEEcCCCCCcccc-c--ccCCCceeeEEEc
Confidence            00           011123456 68999999998  555666644 56899999987654322 1  1234568889999


Q ss_pred             CCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEE
Q 036510          159 PSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVI  238 (288)
Q Consensus       159 p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~  238 (288)
                      |++              .+|..+..|+..++|......+.  ....+  ..++|...+|+|.+    ++|+-+... .=+
T Consensus       248 Pdg--------------d~lfaAt~davfrlw~e~q~wt~--erw~l--gsgrvqtacWspcG----sfLLf~~sg-sp~  304 (445)
T KOG2139|consen  248 PDG--------------DVLFAATCDAVFRLWQENQSWTK--ERWIL--GSGRVQTACWSPCG----SFLLFACSG-SPR  304 (445)
T ss_pred             CCC--------------CEEEEecccceeeeehhccccee--cceec--cCCceeeeeecCCC----CEEEEEEcC-Cce
Confidence            998              67778889999999976432211  11121  23379999999985    334333332 334


Q ss_pred             EEEeecCCCcc---------cceEeecc------------ccCeEEEEeecCCCEEEEEe
Q 036510          239 IWTVAREGDQW---------EGKVLHDF------------KTPVYRVSWSLTGNILAVAD  277 (288)
Q Consensus       239 iw~~~~~~~~~---------~~~~~~~~------------~~~i~~~~~spdg~~l~s~~  277 (288)
                      +|.++-.++..         +..++.+.            .+.+-+++|.|.|.+||+.=
T Consensus       305 lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f  364 (445)
T KOG2139|consen  305 LYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF  364 (445)
T ss_pred             EEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence            66665432211         11111111            24677899999999999873

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=4.9e-10  Score=100.90  Aligned_cols=219  Identities=18%  Similarity=0.193  Sum_probs=126.6

Q ss_pred             ccccccceEEEEEcCCCCEEEEeeCC---CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEE-EEeeCCC--c
Q 036510            7 ETGHEDTVHDVAMDYYGKRLATASSD---YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSIL-ASCSFDG--T   80 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~~l~s~~~d---~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~d~--~   80 (288)
                      ++.|...+.+.+|+|||++|+..+.+   ..+.+|++..+....+   ..+.+......|+++  |+.+ ++.+.++  .
T Consensus       199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l---~~~~g~~~~~~~SpD--G~~l~~~~s~~g~~~  273 (433)
T PRK04922        199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV---ASFRGINGAPSFSPD--GRRLALTLSRDGNPE  273 (433)
T ss_pred             eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe---ccCCCCccCceECCC--CCEEEEEEeCCCCce
Confidence            34566678888999999999887744   4588899865433333   333444557889875  6655 4556665  5


Q ss_pred             EEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEE-eCCCc--EEEEeecCCCCeeeEEeeccCCCCeeEEEe
Q 036510           81 VIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACG-SSDGN--ISVFTARADGGWDTSRIDQAHPVGVTSVSW  157 (288)
Q Consensus        81 v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg-~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~  157 (288)
                      |.+||+.++.    ...+..+.......+|+|+  +..++.. ..++.  |+++++..+. .....   .+......+.|
T Consensus       274 Iy~~d~~~g~----~~~lt~~~~~~~~~~~spD--G~~l~f~sd~~g~~~iy~~dl~~g~-~~~lt---~~g~~~~~~~~  343 (433)
T PRK04922        274 IYVMDLGSRQ----LTRLTNHFGIDTEPTWAPD--GKSIYFTSDRGGRPQIYRVAASGGS-AERLT---FQGNYNARASV  343 (433)
T ss_pred             EEEEECCCCC----eEECccCCCCccceEECCC--CCEEEEEECCCCCceEEEEECCCCC-eEEee---cCCCCccCEEE
Confidence            8888886653    2234445555567899998  4444444 34555  4455554332 21111   12223446899


Q ss_pred             CCCCCCCceecccccCCCceeEEeec-CC--cEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCC
Q 036510          158 APSTAPGALVGSGFLDPVQKLCSGGC-DN--TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASED  234 (288)
Q Consensus       158 ~p~~~~~~~~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D  234 (288)
                      +|++              +.++..+. ++  .|.+||+.++..  .   .+. +........|+|++    ++|+..+.+
T Consensus       344 SpDG--------------~~Ia~~~~~~~~~~I~v~d~~~g~~--~---~Lt-~~~~~~~p~~spdG----~~i~~~s~~  399 (433)
T PRK04922        344 SPDG--------------KKIAMVHGSGGQYRIAVMDLSTGSV--R---TLT-PGSLDESPSFAPNG----SMVLYATRE  399 (433)
T ss_pred             CCCC--------------CEEEEEECCCCceeEEEEECCCCCe--E---ECC-CCCCCCCceECCCC----CEEEEEEec
Confidence            9987              44543332 22  588999876531  1   222 22234567999984    566666553


Q ss_pred             -C--cEEEEEeecCCCcccceEeeccccCeEEEEeec
Q 036510          235 -G--KVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSL  268 (288)
Q Consensus       235 -~--~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~sp  268 (288)
                       +  .|.++++...    ....+....+.+...+|+|
T Consensus       400 ~g~~~L~~~~~~g~----~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        400 GGRGVLAAVSTDGR----VRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             CCceEEEEEECCCC----ceEEcccCCCCCCCCccCC
Confidence             3  4666665321    1222333334566677876

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.31  E-value=1.2e-10  Score=108.37  Aligned_cols=185  Identities=18%  Similarity=0.264  Sum_probs=135.8

Q ss_pred             CCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeE---EEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEee
Q 036510           69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNS---IDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRID  145 (288)
Q Consensus        69 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~---l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~  145 (288)
                      ...++.+..++.+-+||...+.  ....+....+-...+   +-++++  ..++++|+--+.|.+|+...++.   ....
T Consensus        99 ~k~i~l~~~~ns~~i~d~~~~~--~~~~i~~~er~~l~~~~~~g~s~~--~~~i~~gsv~~~iivW~~~~dn~---p~~l  171 (967)
T KOG0974|consen   99 NKKIALVTSRNSLLIRDSKNSS--VLSKIQSDERCTLYSSLIIGDSAE--ELYIASGSVFGEIIVWKPHEDNK---PIRL  171 (967)
T ss_pred             cceEEEEEcCceEEEEecccCc--eehhcCCCceEEEEeEEEEeccCc--EEEEEeccccccEEEEeccccCC---ccee
Confidence            4577788888899999875432  111111111111111   122443  56789999999999999874432   2256


Q ss_pred             ccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCC
Q 036510          146 QAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPK  225 (288)
Q Consensus       146 ~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~  225 (288)
                      .+|.+.+.++.|+.++              +++++.|.|+++|+|++.+....   ....=+|+.+|+.+.|.|+     
T Consensus       172 ~GHeG~iF~i~~s~dg--------------~~i~s~SdDRsiRlW~i~s~~~~---~~~~fgHsaRvw~~~~~~n-----  229 (967)
T KOG0974|consen  172 KGHEGSIFSIVTSLDG--------------RYIASVSDDRSIRLWPIDSREVL---GCTGFGHSARVWACCFLPN-----  229 (967)
T ss_pred             cccCCceEEEEEccCC--------------cEEEEEecCcceeeeeccccccc---CcccccccceeEEEEeccc-----
Confidence            7899999999999887              89999999999999999886321   1244589999999999985     


Q ss_pred             cEEEEEeCCCcEEEEEeecCCCcccceEeecc-ccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          226 STIASASEDGKVIIWTVAREGDQWEGKVLHDF-KTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       226 ~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~-~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                       +++|++.|-++++|+..-.    +.+.+.+| .+.|.+++..++--++++++.|+.+++|+.
T Consensus       230 -~i~t~gedctcrvW~~~~~----~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l  287 (967)
T KOG0974|consen  230 -RIITVGEDCTCRVWGVNGT----QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL  287 (967)
T ss_pred             -eeEEeccceEEEEEecccc----eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence             6999999999999976532    12244455 357999999999999999999999999983

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.29  E-value=3.5e-09  Score=94.89  Aligned_cols=206  Identities=16%  Similarity=0.256  Sum_probs=123.7

Q ss_pred             CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC---CcEEEeecCCCCceEEeEEeecCCCceeEEE
Q 036510           33 YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD---GTVIIWKEGNSNEWIKDHVFEDHKSSVNSID  109 (288)
Q Consensus        33 ~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~  109 (288)
                      ..+.++|.++.   ....+..+...+...+|+++  |+.|+.++.+   ..|.+|++.++..    ..+..+...+.+++
T Consensus       170 ~~l~~~d~~g~---~~~~l~~~~~~~~~p~~Spd--g~~la~~~~~~~~~~i~v~d~~~g~~----~~~~~~~~~~~~~~  240 (417)
T TIGR02800       170 YELQVADYDGA---NPQTITRSREPILSPAWSPD--GQKLAYVSFESGKPEIYVQDLATGQR----EKVASFPGMNGAPA  240 (417)
T ss_pred             ceEEEEcCCCC---CCEEeecCCCceecccCCCC--CCEEEEEEcCCCCcEEEEEECCCCCE----EEeecCCCCccceE
Confidence            34666666432   23445567777889999875  8888876643   4799999876542    12333455677899


Q ss_pred             eccCCCCeEEEEEeCCC--cEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeE-EeecCC-
Q 036510          110 WAPHELGLCLACGSSDG--NISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLC-SGGCDN-  185 (288)
Q Consensus       110 ~~p~~~~~~l~sg~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~-s~~~d~-  185 (288)
                      |+|++ ..++++.+.++  .|++|++..+..    .....+........|+|++              +.|+ ++..++ 
T Consensus       241 ~spDg-~~l~~~~~~~~~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~s~dg--------------~~l~~~s~~~g~  301 (417)
T TIGR02800       241 FSPDG-SKLAVSLSKDGNPDIYVMDLDGKQL----TRLTNGPGIDTEPSWSPDG--------------KSIAFTSDRGGS  301 (417)
T ss_pred             ECCCC-CEEEEEECCCCCccEEEEECCCCCE----EECCCCCCCCCCEEECCCC--------------CEEEEEECCCCC
Confidence            99984 33444555544  577777765421    1122233334567888876              4444 333333 


Q ss_pred             -cEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCC---cEEEEEeecCCCcccceEeeccccCe
Q 036510          186 -TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG---KVIIWTVAREGDQWEGKVLHDFKTPV  261 (288)
Q Consensus       186 -~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~---~i~iw~~~~~~~~~~~~~~~~~~~~i  261 (288)
                       .|.++|+.++..     ..+..+...+..+.|+|++    ++|+.++.++   .|.+||+....    ...+... ...
T Consensus       302 ~~iy~~d~~~~~~-----~~l~~~~~~~~~~~~spdg----~~i~~~~~~~~~~~i~~~d~~~~~----~~~l~~~-~~~  367 (417)
T TIGR02800       302 PQIYMMDADGGEV-----RRLTFRGGYNASPSWSPDG----DLIAFVHREGGGFNIAVMDLDGGG----ERVLTDT-GLD  367 (417)
T ss_pred             ceEEEEECCCCCE-----EEeecCCCCccCeEECCCC----CEEEEEEccCCceEEEEEeCCCCC----eEEccCC-CCC
Confidence             466666655421     1223344556788999984    5777777765   67777765421    1222221 123


Q ss_pred             EEEEeecCCCEEEEEeCCC
Q 036510          262 YRVSWSLTGNILAVADGNN  280 (288)
Q Consensus       262 ~~~~~spdg~~l~s~~~d~  280 (288)
                      ....|+|||+.|+.++.++
T Consensus       368 ~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       368 ESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             CCceECCCCCEEEEEEeCC
Confidence            4568999999998887654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.28  E-value=1.7e-10  Score=95.59  Aligned_cols=212  Identities=17%  Similarity=0.273  Sum_probs=137.0

Q ss_pred             ccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC--ceEEeEEeecC------------CCceeEEEeccCCCCeEEE
Q 036510           55 KGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN--EWIKDHVFEDH------------KSSVNSIDWAPHELGLCLA  120 (288)
Q Consensus        55 ~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~--~~~~~~~~~~h------------~~~v~~l~~~p~~~~~~l~  120 (288)
                      .+-+.++.|.+.  |++|++|..+|.|-++......  ++.-...+..|            ..+|+.++|.++.....++
T Consensus        25 adiis~vef~~~--Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL  102 (433)
T KOG1354|consen   25 ADIISAVEFDHY--GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL  102 (433)
T ss_pred             hcceeeEEeecc--cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence            455788999875  9999999999999999754322  22222222222            2468899999886555667


Q ss_pred             EEeCCCcEEEEeecCCCCee--------------------------------eE-EeeccCCCCeeEEEeCCCCCCCcee
Q 036510          121 CGSSDGNISVFTARADGGWD--------------------------------TS-RIDQAHPVGVTSVSWAPSTAPGALV  167 (288)
Q Consensus       121 sg~~d~~i~i~d~~~~~~~~--------------------------------~~-~~~~~~~~~v~~i~~~p~~~~~~~~  167 (288)
                      ..++|++|++|.++....-.                                +. ....+|+..|.+|+++.+.      
T Consensus       103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~------  176 (433)
T KOG1354|consen  103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK------  176 (433)
T ss_pred             EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc------
Confidence            77899999999886422100                                00 1123567777788777765      


Q ss_pred             cccccCCCceeEEeecCCcEEEEEEeCCceeeeeee----ccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEee
Q 036510          168 GSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFP----ALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA  243 (288)
Q Consensus       168 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~  243 (288)
                              ..+.|+ .|=.|.||++.-....+..+.    .+..-..-|++..|+|..   -..|+-.|+-|+|++-|++
T Consensus       177 --------Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~---cn~f~YSSSKGtIrLcDmR  244 (433)
T KOG1354|consen  177 --------ETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHH---CNVFVYSSSKGTIRLCDMR  244 (433)
T ss_pred             --------ceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhH---ccEEEEecCCCcEEEeech
Confidence                    445554 456788998864322222211    112223357888999974   3678889999999999998


Q ss_pred             cCCCcc-------------cceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          244 REGDQW-------------EGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       244 ~~~~~~-------------~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ....+.             ....+.+.-..|..++|+++|+++++=+ --+|+|||.
T Consensus       245 ~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~  300 (433)
T KOG1354|consen  245 QSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDL  300 (433)
T ss_pred             hhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEec
Confidence            432110             0011112234688999999999998764 389999995

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.28  E-value=2.7e-09  Score=96.21  Aligned_cols=218  Identities=14%  Similarity=0.130  Sum_probs=127.7

Q ss_pred             ccccccceEEEEEcCCCCEEEEeeC---CCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEE-EEeeCCCc--
Q 036510            7 ETGHEDTVHDVAMDYYGKRLATASS---DYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSIL-ASCSFDGT--   80 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~~l~s~~~---d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~d~~--   80 (288)
                      ++.|...+...+|+|||+.|+..+.   +..|.+||+..+..   ..+..+.+.+...+|+++  |+.| ++.+.++.  
T Consensus       197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~---~~l~~~~g~~~~~~~SPD--G~~la~~~~~~g~~~  271 (435)
T PRK05137        197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR---ELVGNFPGMTFAPRFSPD--GRKVVMSLSQGGNTD  271 (435)
T ss_pred             EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE---EEeecCCCcccCcEECCC--CCEEEEEEecCCCce
Confidence            4567788999999999999887764   46799999864432   344556667788899875  6655 46666766  


Q ss_pred             EEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEe-CCC--cEEEEeecCCCCeeeEEeeccCCCCeeEEEe
Q 036510           81 VIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGS-SDG--NISVFTARADGGWDTSRIDQAHPVGVTSVSW  157 (288)
Q Consensus        81 v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~-~d~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~  157 (288)
                      |.+||+..+.    ...+..+........|+|++  ..++..+ .++  .|+++|+..+. ...  . ..+...+....|
T Consensus       272 Iy~~d~~~~~----~~~Lt~~~~~~~~~~~spDG--~~i~f~s~~~g~~~Iy~~d~~g~~-~~~--l-t~~~~~~~~~~~  341 (435)
T PRK05137        272 IYTMDLRSGT----TTRLTDSPAIDTSPSYSPDG--SQIVFESDRSGSPQLYVMNADGSN-PRR--I-SFGGGRYSTPVW  341 (435)
T ss_pred             EEEEECCCCc----eEEccCCCCccCceeEcCCC--CEEEEEECCCCCCeEEEEECCCCC-eEE--e-ecCCCcccCeEE
Confidence            5555765543    23344455566788999984  4444443 333  56667764322 211  1 122334567889


Q ss_pred             CCCCCCCceecccccCCCceeEEeecC---CcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCC
Q 036510          158 APSTAPGALVGSGFLDPVQKLCSGGCD---NTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASED  234 (288)
Q Consensus       158 ~p~~~~~~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D  234 (288)
                      +|++              +.++..+.+   ..|.+||+..+..  ..   +. ....+.+..|+|++    ++|+..+.+
T Consensus       342 SpdG--------------~~ia~~~~~~~~~~i~~~d~~~~~~--~~---lt-~~~~~~~p~~spDG----~~i~~~~~~  397 (435)
T PRK05137        342 SPRG--------------DLIAFTKQGGGQFSIGVMKPDGSGE--RI---LT-SGFLVEGPTWAPNG----RVIMFFRQT  397 (435)
T ss_pred             CCCC--------------CEEEEEEcCCCceEEEEEECCCCce--Ee---cc-CCCCCCCCeECCCC----CEEEEEEcc
Confidence            9987              445443322   3577778654321  11   11 11236778999985    566655442


Q ss_pred             ------CcEEEEEeecCCCcccceEeeccccCeEEEEeec
Q 036510          235 ------GKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSL  268 (288)
Q Consensus       235 ------~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~sp  268 (288)
                            ..+.+.++....    ...+.. ...+...+|+|
T Consensus       398 ~~~~~~~~L~~~dl~g~~----~~~l~~-~~~~~~p~Wsp  432 (435)
T PRK05137        398 PGSGGAPKLYTVDLTGRN----EREVPT-PGDASDPAWSP  432 (435)
T ss_pred             CCCCCcceEEEEECCCCc----eEEccC-CCCccCcccCC
Confidence                  245555554221    122221 23356677776

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.27  E-value=7.7e-12  Score=106.93  Aligned_cols=229  Identities=17%  Similarity=0.197  Sum_probs=158.7

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCc
Q 036510           12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNE   91 (288)
Q Consensus        12 ~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~   91 (288)
                      ..|.++.|-...+++|.+- -+.+.+||-.   +..++++..|. .|..+.|-|.  --+|++++..|.++.-|+..+. 
T Consensus       171 Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~---GtElHClk~~~-~v~rLeFLPy--HfLL~~~~~~G~L~Y~DVS~Gk-  242 (545)
T KOG1272|consen  171 ETVRDVTFLHNEQFFAVAQ-KKYVYVYDNN---GTELHCLKRHI-RVARLEFLPY--HFLLVAASEAGFLKYQDVSTGK-  242 (545)
T ss_pred             hhhhhhhhhcchHHHHhhh-hceEEEecCC---CcEEeehhhcC-chhhhcccch--hheeeecccCCceEEEeechhh-
Confidence            4566667766666666554 4567888853   35577777654 5788998764  4578899999999999998765 


Q ss_pred             eEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccc
Q 036510           92 WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGF  171 (288)
Q Consensus        92 ~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~  171 (288)
                        .+..+..-.+.+..++-+|-  +-++-.|...|+|.+|......   ++.....|..+|.+|++.|.+          
T Consensus       243 --lVa~~~t~~G~~~vm~qNP~--NaVih~GhsnGtVSlWSP~ske---PLvKiLcH~g~V~siAv~~~G----------  305 (545)
T KOG1272|consen  243 --LVASIRTGAGRTDVMKQNPY--NAVIHLGHSNGTVSLWSPNSKE---PLVKILCHRGPVSSIAVDRGG----------  305 (545)
T ss_pred             --hhHHHHccCCccchhhcCCc--cceEEEcCCCceEEecCCCCcc---hHHHHHhcCCCcceEEECCCC----------
Confidence              23333334566777777886  4567788999999999876542   223345799999999999987          


Q ss_pred             cCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccc
Q 036510          172 LDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEG  251 (288)
Q Consensus       172 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~  251 (288)
                          ++++|.|.|+.++|||++.-    ..++++.. ......++||--      -+++.|....+.||.-.........
T Consensus       306 ----~YMaTtG~Dr~~kIWDlR~~----~ql~t~~t-p~~a~~ls~Sqk------glLA~~~G~~v~iw~d~~~~s~~~~  370 (545)
T KOG1272|consen  306 ----RYMATTGLDRKVKIWDLRNF----YQLHTYRT-PHPASNLSLSQK------GLLALSYGDHVQIWKDALKGSGHGE  370 (545)
T ss_pred             ----cEEeecccccceeEeeeccc----cccceeec-CCCccccccccc------cceeeecCCeeeeehhhhcCCCCCC
Confidence                89999999999999999863    23333332 234677788753      3667777779999975433211111


Q ss_pred             eE--eeccccCeEEEEeecCCCEEEEEeCCC
Q 036510          252 KV--LHDFKTPVYRVSWSLTGNILAVADGNN  280 (288)
Q Consensus       252 ~~--~~~~~~~i~~~~~spdg~~l~s~~~d~  280 (288)
                      .+  .|-..++|..+.|-|-...|-.|-.-|
T Consensus       371 ~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G  401 (545)
T KOG1272|consen  371 TPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG  401 (545)
T ss_pred             cchhhhccCcccccceeccHHHeeeccccCC
Confidence            22  233456899999999877776664443

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.27  E-value=2.1e-10  Score=106.65  Aligned_cols=197  Identities=19%  Similarity=0.237  Sum_probs=143.2

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccC-----eEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGA-----VWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      .+.|....+..+...++.+..+..+-+||.....   +..-..|...     ..-+..+.  +.-++++|+.-+.+.+|.
T Consensus        87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~---~~~~i~~~er~~l~~~~~~g~s~--~~~~i~~gsv~~~iivW~  161 (967)
T KOG0974|consen   87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSS---VLSKIQSDERCTLYSSLIIGDSA--EELYIASGSVFGEIIVWK  161 (967)
T ss_pred             cccccccchhhhcceEEEEEcCceEEEEecccCc---eehhcCCCceEEEEeEEEEeccC--cEEEEEeccccccEEEEe
Confidence            3455556677777888888889999999985432   1111112211     11122222  367899999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      ..-.+   ....+.+|.+.|..+.|+-+  +.++++.+.|.++|+|++.+.....  ...=+|+..+..+.|.|+     
T Consensus       162 ~~~dn---~p~~l~GHeG~iF~i~~s~d--g~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n-----  229 (967)
T KOG0974|consen  162 PHEDN---KPIRLKGHEGSIFSIVTSLD--GRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN-----  229 (967)
T ss_pred             ccccC---CcceecccCCceEEEEEccC--CcEEEEEecCcceeeeecccccccC--cccccccceeEEEEeccc-----
Confidence            86322   22357899999999999877  7899999999999999997653321  123368999999998884     


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCc-ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTD-WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR  244 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~-~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~  244 (288)
                                 .++|+++|-++++|+....     ....+.+|.. .|+.+...++.    -.++|++.|+.+++|+...
T Consensus       230 -----------~i~t~gedctcrvW~~~~~-----~l~~y~~h~g~~iw~~~~~~~~----~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  230 -----------RIITVGEDCTCRVWGVNGT-----QLEVYDEHSGKGIWKIAVPIGV----IIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             -----------eeEEeccceEEEEEecccc-----eehhhhhhhhcceeEEEEcCCc----eEEEeeccCcchhhhhhhc
Confidence                       5999999999999976543     3336666755 48999988863    5799999999999999864

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.27  E-value=3.4e-10  Score=92.71  Aligned_cols=253  Identities=17%  Similarity=0.251  Sum_probs=160.0

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCc---eeeEEEecccc------------CeEEEEecCCCCCCEEEEe
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTS---QHLAKLSGHKG------------AVWEVAWAHPKFGSILASC   75 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~---~~~~~~~~h~~------------~v~~~~~~~~~~~~~l~s~   75 (288)
                      .+.|++|.|...|.||++|...|.|-++......+   +.+..+++|..            .|..+.|..+..-..|+-.
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            36788899999999999999999999997643221   12233455553            3688999876555678888


Q ss_pred             eCCCcEEEeecCCCC-------------------c-----------------eE---EeEEe-ecCCCceeEEEeccCCC
Q 036510           76 SFDGTVIIWKEGNSN-------------------E-----------------WI---KDHVF-EDHKSSVNSIDWAPHEL  115 (288)
Q Consensus        76 s~d~~v~iwd~~~~~-------------------~-----------------~~---~~~~~-~~h~~~v~~l~~~p~~~  115 (288)
                      ..|++|++|.+...+                   .                 .+   +.+.+ ..|...+++++|+.+  
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD--  183 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD--  183 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc--
Confidence            999999999764321                   0                 00   00111 357778999999887  


Q ss_pred             CeEEEEEeCCCcEEEEeecCC-CCeeeEEeeccCC-----CCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEE
Q 036510          116 GLCLACGSSDGNISVFTARAD-GGWDTSRIDQAHP-----VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKV  189 (288)
Q Consensus       116 ~~~l~sg~~d~~i~i~d~~~~-~~~~~~~~~~~~~-----~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i  189 (288)
                      ...++++ .|=.|.+|++... +.+..+. .+.|+     .-|++..|+|..-             ..+.-++..|.|+|
T Consensus       184 ~et~lSa-DdLrINLWnl~i~D~sFnIVD-iKP~nmeeLteVItSaeFhp~~c-------------n~fmYSsSkG~Ikl  248 (460)
T COG5170         184 KETLLSA-DDLRINLWNLEIIDGSFNIVD-IKPHNMEELTEVITSAEFHPEMC-------------NVFMYSSSKGEIKL  248 (460)
T ss_pred             hheeeec-cceeeeeccccccCCceEEEe-ccCccHHHHHHHHhhcccCHhHc-------------ceEEEecCCCcEEe
Confidence            3445544 5668899988653 3333322 23343     3477888888752             44555566899999


Q ss_pred             EEEeCCc-----ee-ee----e--eeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeec-
Q 036510          190 WKLYNGI-----WK-MD----C--FPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHD-  256 (288)
Q Consensus       190 wd~~~~~-----~~-~~----~--~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~-  256 (288)
                      -|++...     .. ++    .  ..-+.+-...|..+.|+|++    .+|++- +-.+++|||.+..+.+..-.+++. 
T Consensus       249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng----ryIlsR-dyltvkiwDvnm~k~pikTi~~h~~  323 (460)
T COG5170         249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG----RYILSR-DYLTVKIWDVNMAKNPIKTIPMHCD  323 (460)
T ss_pred             hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC----cEEEEe-ccceEEEEecccccCCceeechHHH
Confidence            9998421     00 00    0  01122334468899999984    566544 345899999986544321111221 


Q ss_pred             --------cc-cCe---EEEEeecCCCEEEEEeCCCcEEEe
Q 036510          257 --------FK-TPV---YRVSWSLTGNILAVADGNNNVTLW  285 (288)
Q Consensus       257 --------~~-~~i---~~~~~spdg~~l~s~~~d~~v~~w  285 (288)
                              +. ..|   ..+.||-|.+.+++|+-.+..-++
T Consensus       324 l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiy  364 (460)
T COG5170         324 LMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIY  364 (460)
T ss_pred             HHHHHHhhhhccceeeeEEEEecCCcccccccccccceeee
Confidence                    11 123   468999999999999877665554

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.24  E-value=1.2e-10  Score=113.55  Aligned_cols=182  Identities=18%  Similarity=0.311  Sum_probs=130.2

Q ss_pred             cCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEee
Q 036510           20 DYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFE   99 (288)
Q Consensus        20 s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~   99 (288)
                      .|.-.+.++|+.||.+++|.+..+..-......|. ..|+.+.|++.  |+.+..+..||.+.+|... ..   ......
T Consensus      2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~q--Gnk~~i~d~dg~l~l~q~~-pk---~~~s~q 2289 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQ--GNKFGIVDGDGDLSLWQAS-PK---PYTSWQ 2289 (2439)
T ss_pred             CCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhccc--CCceeeeccCCceeecccC-Cc---ceeccc
Confidence            45667899999999999999854432223333444 88999999875  8999999999999999875 22   223344


Q ss_pred             cCCCceeEEEeccCCCCeEEEEE--eCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCce
Q 036510          100 DHKSSVNSIDWAPHELGLCLACG--SSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQK  177 (288)
Q Consensus       100 ~h~~~v~~l~~~p~~~~~~l~sg--~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~  177 (288)
                      -|........|-..   .++-+|  +.++++.+||.-......  .+..+|..+++++.+.|..              ++
T Consensus      2290 chnk~~~Df~Fi~s---~~~tag~s~d~~n~~lwDtl~~~~~s--~v~~~H~~gaT~l~~~P~~--------------ql 2350 (2439)
T KOG1064|consen 2290 CHNKALSDFRFIGS---LLATAGRSSDNRNVCLWDTLLPPMNS--LVHTCHDGGATVLAYAPKH--------------QL 2350 (2439)
T ss_pred             cCCccccceeeeeh---hhhccccCCCCCcccchhcccCcccc--eeeeecCCCceEEEEcCcc--------------eE
Confidence            57766666666542   112222  455789999975432211  2337899999999999987              88


Q ss_pred             eEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510          178 LCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE  245 (288)
Q Consensus       178 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~  245 (288)
                      |+|||.+|-|++||++..    ++++.+..         +..     ..+|++|+..|+|+||++...
T Consensus      2351 lisggr~G~v~l~D~rqr----ql~h~~~~---------~~~-----~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2351 LISGGRKGEVCLFDIRQR----QLRHTFQA---------LDT-----REYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             EEecCCcCcEEEeehHHH----HHHHHhhh---------hhh-----hheeeccCcccceEEEEcccc
Confidence            999999999999999764    23333322         221     358999999999999999864

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.22  E-value=6.9e-10  Score=91.56  Aligned_cols=257  Identities=16%  Similarity=0.304  Sum_probs=150.7

Q ss_pred             cceEEEEEcCCCCE-EEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCC-CEEEEeeCCCcEEEeecCCC
Q 036510           12 DTVHDVAMDYYGKR-LATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFG-SILASCSFDGTVIIWKEGNS   89 (288)
Q Consensus        12 ~~v~~~~~s~~g~~-l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~s~d~~v~iwd~~~~   89 (288)
                      +.|.-+.|..|.-+ |-....|+.|.+|++..+  +.-..++.-.+++.+++|||+  | .+|.+...|-.|.+|.+.+.
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp--ew~ckIdeg~agls~~~WSPd--grhiL~tseF~lriTVWSL~t~  124 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP--EWYCKIDEGQAGLSSISWSPD--GRHILLTSEFDLRITVWSLNTQ  124 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecc--eeEEEeccCCCcceeeeECCC--cceEeeeecceeEEEEEEeccc
Confidence            45556778877644 555677899999999655  445566777888999999976  5 67778889999999998765


Q ss_pred             CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCcee--
Q 036510           90 NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV--  167 (288)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~--  167 (288)
                      ...    .++-.+..+..++|+|+  +++.+..+.-.-.-.+++-.-..|...+..+-.+...+.|.|+|++...++.  
T Consensus       125 ~~~----~~~~pK~~~kg~~f~~d--g~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~  198 (447)
T KOG4497|consen  125 KGY----LLPHPKTNVKGYAFHPD--GQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDN  198 (447)
T ss_pred             eeE----EecccccCceeEEECCC--CceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecc
Confidence            422    23333445788999998  5555544321111111111011111111111122334556666666321110  


Q ss_pred             -------------cc---cccCCCceeEEeecCCcEEEEEEe-----CC-------------------------------
Q 036510          168 -------------GS---GFLDPVQKLCSGGCDNTVKVWKLY-----NG-------------------------------  195 (288)
Q Consensus       168 -------------~~---~~~~~~~~l~s~~~d~~i~iwd~~-----~~-------------------------------  195 (288)
                                   +.   ......++|+.|+.|+.+|+.+-.     ..                               
T Consensus       199 ~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLs  278 (447)
T KOG4497|consen  199 VLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLS  278 (447)
T ss_pred             hhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccc
Confidence                         00   112335889999999999885431     00                               


Q ss_pred             ---------ce-------eee----eeeccc------cCCcceEEEEecCCCCCCCcEEEEEeC--CCcEEEEEeecCCC
Q 036510          196 ---------IW-------KMD----CFPALQ------MHTDWVRDVAWAPNLGLPKSTIASASE--DGKVIIWTVAREGD  247 (288)
Q Consensus       196 ---------~~-------~~~----~~~~~~------~h~~~V~~v~~sp~~~~~~~~l~s~s~--D~~i~iw~~~~~~~  247 (288)
                               .+       ++.    .++.++      ...-.+.-++|++|.    +++++-.+  -+.+-+||++..+.
T Consensus       279 f~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds----~y~aTrnd~~PnalW~Wdlq~l~l  354 (447)
T KOG4497|consen  279 FTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS----TYAATRNDKYPNALWLWDLQNLKL  354 (447)
T ss_pred             cCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc----eEEeeecCCCCceEEEEechhhhh
Confidence                     00       000    001111      112246678999984    56666654  45799999875321


Q ss_pred             cccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          248 QWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       248 ~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      .  .-++  -..+|....|.|.-..|+.......+.+|-
T Consensus       355 ~--avLi--Qk~piraf~WdP~~prL~vctg~srLY~W~  389 (447)
T KOG4497|consen  355 H--AVLI--QKHPIRAFEWDPGRPRLVVCTGKSRLYFWA  389 (447)
T ss_pred             h--hhhh--hccceeEEEeCCCCceEEEEcCCceEEEEc
Confidence            1  0111  135899999999999999998877888885

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.18  E-value=2.4e-10  Score=94.22  Aligned_cols=224  Identities=17%  Similarity=0.246  Sum_probs=132.9

Q ss_pred             EEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeE
Q 036510           17 VAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDH   96 (288)
Q Consensus        17 ~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~   96 (288)
                      .+|||+|+|+|+.+.- .+-|-|..  +.+. .++-.--+.|..+.|..+ ...+|.....|+.|.+|++...+ |.  .
T Consensus        14 c~fSp~g~yiAs~~~y-rlviRd~~--tlq~-~qlf~cldki~yieW~ad-s~~ilC~~yk~~~vqvwsl~Qpe-w~--c   85 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRY-RLVIRDSE--TLQL-HQLFLCLDKIVYIEWKAD-SCHILCVAYKDPKVQVWSLVQPE-WY--C   85 (447)
T ss_pred             eeECCCCCeeeeeeee-EEEEeccc--hhhH-HHHHHHHHHhhheeeecc-ceeeeeeeeccceEEEEEeecce-eE--E
Confidence            4799999999998755 44444432  2221 111112356778999864 23445556789999999997543 42  2


Q ss_pred             EeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCc
Q 036510           97 VFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQ  176 (288)
Q Consensus        97 ~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~  176 (288)
                      .+......+.+++|+|++ -.+|.+...|-.|.+|.+.+......    +.-+..+.-++|.|++              +
T Consensus        86 kIdeg~agls~~~WSPdg-rhiL~tseF~lriTVWSL~t~~~~~~----~~pK~~~kg~~f~~dg--------------~  146 (447)
T KOG4497|consen   86 KIDEGQAGLSSISWSPDG-RHILLTSEFDLRITVWSLNTQKGYLL----PHPKTNVKGYAFHPDG--------------Q  146 (447)
T ss_pred             EeccCCCcceeeeECCCc-ceEeeeecceeEEEEEEeccceeEEe----cccccCceeEEECCCC--------------c
Confidence            344556789999999994 25677888999999999976533221    1112235778889987              4


Q ss_pred             eeEEeecCCcEEEEEEeC-CceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEee
Q 036510          177 KLCSGGCDNTVKVWKLYN-GIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLH  255 (288)
Q Consensus       177 ~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~  255 (288)
                      +.+-.+.....-...+.. ..+  ..+..++...--...+.|+||+    +.         +.+||--..    .+....
T Consensus       147 f~ai~sRrDCkdyv~i~~c~~W--~ll~~f~~dT~DltgieWsPdg----~~---------laVwd~~Le----ykv~aY  207 (447)
T KOG4497|consen  147 FCAILSRRDCKDYVQISSCKAW--ILLKEFKLDTIDLTGIEWSPDG----NW---------LAVWDNVLE----YKVYAY  207 (447)
T ss_pred             eeeeeecccHHHHHHHHhhHHH--HHHHhcCCCcccccCceECCCC----cE---------EEEecchhh----heeeee
Confidence            444443322111111110 000  0111222222235678999974    33         557763211    011122


Q ss_pred             ccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          256 DFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       256 ~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      +-+-.+..++|+|-+++|++|+.|+.+||.+
T Consensus       208 e~~lG~k~v~wsP~~qflavGsyD~~lrvln  238 (447)
T KOG4497|consen  208 ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN  238 (447)
T ss_pred             eeccceeEEEeccccceEEeeccchhhhhhc
Confidence            2234588899999999999999999998754

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.13  E-value=5.3e-08  Score=87.38  Aligned_cols=222  Identities=13%  Similarity=0.128  Sum_probs=117.2

Q ss_pred             ceEEEEEcCCCCE--E-EEeeCCCc--EEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeC-CC----cEE
Q 036510           13 TVHDVAMDYYGKR--L-ATASSDYS--IKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSF-DG----TVI   82 (288)
Q Consensus        13 ~v~~~~~s~~g~~--l-~s~~~d~~--i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-d~----~v~   82 (288)
                      .+.+=.|+|||+.  + .....++.  |.+.+++.+....+..+   .+.....+|+|+  |+.|+..+. +|    .+.
T Consensus       186 ~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~---~g~~~~p~wSPD--G~~Laf~s~~~g~~di~~~  260 (428)
T PRK01029        186 LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL---QGNQLMPTFSPR--KKLLAFISDRYGNPDLFIQ  260 (428)
T ss_pred             CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC---CCCccceEECCC--CCEEEEEECCCCCcceeEE
Confidence            3445579999974  2 24444444  55556655444444333   334456789875  777775543 23    344


Q ss_pred             EeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEE-EeCCCcEEEEeecC--CCCeeeEEeeccCCCCeeEEEeCC
Q 036510           83 IWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLAC-GSSDGNISVFTARA--DGGWDTSRIDQAHPVGVTSVSWAP  159 (288)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~s-g~~d~~i~i~d~~~--~~~~~~~~~~~~~~~~v~~i~~~p  159 (288)
                      +|++..+..-........+.......+|+|++  ..++. ...++...+|.+..  .+.  .......+...+....|+|
T Consensus       261 ~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG--~~Laf~s~~~g~~~ly~~~~~~~g~--~~~~lt~~~~~~~~p~wSP  336 (428)
T PRK01029        261 SFSLETGAIGKPRRLLNEAFGTQGNPSFSPDG--TRLVFVSNKDGRPRIYIMQIDPEGQ--SPRLLTKKYRNSSCPAWSP  336 (428)
T ss_pred             EeecccCCCCcceEeecCCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEECccccc--ceEEeccCCCCccceeECC
Confidence            46654421111112222222344678999984  44443 34566656665432  111  1122223334567889999


Q ss_pred             CCCCCceecccccCCCceeEEe-ecC--CcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEE-EEeCC-
Q 036510          160 STAPGALVGSGFLDPVQKLCSG-GCD--NTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIA-SASED-  234 (288)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~l~s~-~~d--~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~-s~s~D-  234 (288)
                      ++              +.|+.. ..+  ..|.+||+.++..  +   .+......+.+..|+|++    ++|+ ++..+ 
T Consensus       337 DG--------------~~Laf~~~~~g~~~I~v~dl~~g~~--~---~Lt~~~~~~~~p~wSpDG----~~L~f~~~~~g  393 (428)
T PRK01029        337 DG--------------KKIAFCSVIKGVRQICVYDLATGRD--Y---QLTTSPENKESPSWAIDS----LHLVYSAGNSN  393 (428)
T ss_pred             CC--------------CEEEEEEcCCCCcEEEEEECCCCCe--E---EccCCCCCccceEECCCC----CEEEEEECCCC
Confidence            98              444433 222  3688999877632  1   222223346778999985    4555 34333 


Q ss_pred             -CcEEEEEeecCCCcccceEeeccccCeEEEEeecCC
Q 036510          235 -GKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTG  270 (288)
Q Consensus       235 -~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg  270 (288)
                       ..|.++++....    ...+....+.+...+|+|-+
T Consensus       394 ~~~L~~vdl~~g~----~~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        394 ESELYLISLITKK----TRKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             CceEEEEECCCCC----EEEeecCCCcccCceecCCC
Confidence             457777765321    12333333446678888754

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.13  E-value=7.8e-10  Score=99.82  Aligned_cols=249  Identities=17%  Similarity=0.182  Sum_probs=154.3

Q ss_pred             ceEEEEEcCC---CCEEEEeeCCCcEEEEEeCCCCc-eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCC
Q 036510           13 TVHDVAMDYY---GKRLATASSDYSIKIIGVGNNTS-QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN   88 (288)
Q Consensus        13 ~v~~~~~s~~---g~~l~s~~~d~~i~lwd~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~   88 (288)
                      .|-.++|+|.   ...+++.+..++| +|++..... ..-..+-||...|+++.|.+ +...++++++.|..+..||++.
T Consensus        69 ~vad~qws~h~a~~~wiVsts~qkai-iwnlA~ss~~aIef~lhghsraitd~n~~~-q~pdVlatcsvdt~vh~wd~rS  146 (1081)
T KOG0309|consen   69 QVADVQWSPHPAKPYWIVSTSNQKAI-IWNLAKSSSNAIEFVLHGHSRAITDINFNP-QHPDVLATCSVDTYVHAWDMRS  146 (1081)
T ss_pred             hhcceecccCCCCceeEEecCcchhh-hhhhhcCCccceEEEEecCccceeccccCC-CCCcceeeccccccceeeeccC
Confidence            4456678874   3458888877765 788754322 22345789999999999964 4678999999999999999987


Q ss_pred             CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceec
Q 036510           89 SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG  168 (288)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~  168 (288)
                      ...+  ...+..-......++|+-.+ +..+ +.+..+.|++||++.+..  ++...++|...|..++|.....      
T Consensus       147 p~~p--~ys~~~w~s~asqVkwnyk~-p~vl-asshg~~i~vwd~r~gs~--pl~s~K~~vs~vn~~~fnr~~~------  214 (1081)
T KOG0309|consen  147 PHRP--FYSTSSWRSAASQVKWNYKD-PNVL-ASSHGNDIFVWDLRKGST--PLCSLKGHVSSVNSIDFNRFKY------  214 (1081)
T ss_pred             CCcc--eeeeecccccCceeeecccC-cchh-hhccCCceEEEeccCCCc--ceEEecccceeeehHHHhhhhh------
Confidence            6532  22233334466788887653 3333 345667899999998753  4455667877788888876542      


Q ss_pred             ccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCC--
Q 036510          169 SGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG--  246 (288)
Q Consensus       169 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~--  246 (288)
                             ..+.+++.|++|+.||......+-+   ....-..+|+.-+|-|-+.  +.++----.++.+.+++.+...  
T Consensus       215 -------s~~~s~~~d~tvkfw~y~kSt~e~~---~~vtt~~piw~~r~~Pfg~--g~~~mp~~G~n~v~~~~c~n~d~e  282 (1081)
T KOG0309|consen  215 -------SEIMSSSNDGTVKFWDYSKSTTESK---RTVTTNFPIWRGRYLPFGE--GYCIMPMVGGNMVPQLRCENSDLE  282 (1081)
T ss_pred             -------hhhcccCCCCceeeecccccccccc---eeccccCcceeccccccCc--eeEeccccCCeeeeeccccchhhh
Confidence                   5678899999999999876432111   1122334566666666431  1122111223344444433210  


Q ss_pred             -----CcccceEeeccccCeEEEEeecCC----------CEEEEEeCCCcEEEeEc
Q 036510          247 -----DQWEGKVLHDFKTPVYRVSWSLTG----------NILAVADGNNNVTLWEE  287 (288)
Q Consensus       247 -----~~~~~~~~~~~~~~i~~~~~spdg----------~~l~s~~~d~~v~~w~~  287 (288)
                           .....-.+.+|...|....|-..+          -+|++=|.|-++|+|.+
T Consensus       283 ~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI  338 (1081)
T KOG0309|consen  283 WNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPI  338 (1081)
T ss_pred             hccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeec
Confidence                 011112233455555444333222          36899999999999975

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.12  E-value=2.9e-08  Score=88.98  Aligned_cols=189  Identities=20%  Similarity=0.210  Sum_probs=111.8

Q ss_pred             cccccceEEEEEcCCCCEEEEeeCC---CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEE-EeeCCC--cE
Q 036510            8 TGHEDTVHDVAMDYYGKRLATASSD---YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILA-SCSFDG--TV   81 (288)
Q Consensus         8 ~~h~~~v~~~~~s~~g~~l~s~~~d---~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~s~d~--~v   81 (288)
                      ..+...+...+|+|||++|+.++.+   ..|++|++..+..   ..+..+...+.+++|+++  ++.|+ +.+.++  .|
T Consensus       186 ~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~---~~~~~~~~~~~~~~~spD--g~~l~~~~~~~~~~~i  260 (417)
T TIGR02800       186 TRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR---EKVASFPGMNGAPAFSPD--GSKLAVSLSKDGNPDI  260 (417)
T ss_pred             ecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE---EEeecCCCCccceEECCC--CCEEEEEECCCCCccE
Confidence            3456677888999999999877654   4788999864422   223445556677899865  66554 555554  57


Q ss_pred             EEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEE-EeCCC--cEEEEeecCCCCeeeEEeeccCCCCeeEEEeC
Q 036510           82 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLAC-GSSDG--NISVFTARADGGWDTSRIDQAHPVGVTSVSWA  158 (288)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~s-g~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~  158 (288)
                      .+|++.++.    ...+..+........|+|+  +..++. ...++  .|.++++..+. ..   ....+......+.|+
T Consensus       261 ~~~d~~~~~----~~~l~~~~~~~~~~~~s~d--g~~l~~~s~~~g~~~iy~~d~~~~~-~~---~l~~~~~~~~~~~~s  330 (417)
T TIGR02800       261 YVMDLDGKQ----LTRLTNGPGIDTEPSWSPD--GKSIAFTSDRGGSPQIYMMDADGGE-VR---RLTFRGGYNASPSWS  330 (417)
T ss_pred             EEEECCCCC----EEECCCCCCCCCCEEECCC--CCEEEEEECCCCCceEEEEECCCCC-EE---EeecCCCCccCeEEC
Confidence            778876543    1223334444567789997  444443 33344  46666665332 21   122233445677899


Q ss_pred             CCCCCCceecccccCCCceeEEeecCC---cEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCC
Q 036510          159 PSTAPGALVGSGFLDPVQKLCSGGCDN---TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG  235 (288)
Q Consensus       159 p~~~~~~~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~  235 (288)
                      |++              +.++..+.++   .|.+||+.++..  +.+   ... .......|+|++    ++|+..+.++
T Consensus       331 pdg--------------~~i~~~~~~~~~~~i~~~d~~~~~~--~~l---~~~-~~~~~p~~spdg----~~l~~~~~~~  386 (417)
T TIGR02800       331 PDG--------------DLIAFVHREGGGFNIAVMDLDGGGE--RVL---TDT-GLDESPSFAPNG----RMILYATTRG  386 (417)
T ss_pred             CCC--------------CEEEEEEccCCceEEEEEeCCCCCe--EEc---cCC-CCCCCceECCCC----CEEEEEEeCC
Confidence            987              5565555554   677888766421  111   111 123455899984    5676766654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.09  E-value=1.1e-07  Score=85.30  Aligned_cols=220  Identities=15%  Similarity=0.130  Sum_probs=115.4

Q ss_pred             cEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCE--EE-EeeCCCc--EEEeecCCCCceEEeEEeecCCCceeEE
Q 036510           34 SIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSI--LA-SCSFDGT--VIIWKEGNSNEWIKDHVFEDHKSSVNSI  108 (288)
Q Consensus        34 ~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~--l~-s~s~d~~--v~iwd~~~~~~~~~~~~~~~h~~~v~~l  108 (288)
                      .+.+.|.++..   .+.+.........-+|+|+  |+.  ++ ....++.  |.+.++..+..    ..+....+.....
T Consensus       166 ~l~~~d~dG~~---~~~lt~~~~~~~sP~wSPD--G~~~~~~y~S~~~g~~~I~~~~l~~g~~----~~lt~~~g~~~~p  236 (428)
T PRK01029        166 ELWSVDYDGQN---LRPLTQEHSLSITPTWMHI--GSGFPYLYVSYKLGVPKIFLGSLENPAG----KKILALQGNQLMP  236 (428)
T ss_pred             eEEEEcCCCCC---ceEcccCCCCcccceEccC--CCceEEEEEEccCCCceEEEEECCCCCc----eEeecCCCCccce
Confidence            45555665432   2334445556677899976  543  32 3334444  55556654432    1222233445678


Q ss_pred             EeccCCCCeEEE-EEeCCC----cEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeE-Eee
Q 036510          109 DWAPHELGLCLA-CGSSDG----NISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLC-SGG  182 (288)
Q Consensus       109 ~~~p~~~~~~l~-sg~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~-s~~  182 (288)
                      +|+||+  ..++ +...+|    .+.+|++..+..-.................|+|++              +.|+ ++.
T Consensus       237 ~wSPDG--~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG--------------~~Laf~s~  300 (428)
T PRK01029        237 TFSPRK--KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDG--------------TRLVFVSN  300 (428)
T ss_pred             EECCCC--CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCC--------------CEEEEEEC
Confidence            999994  3344 333223    34446655421111112222222234578999997              4444 444


Q ss_pred             cCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCC---CcEEEEEeecCCCcccceEeecccc
Q 036510          183 CDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASED---GKVIIWTVAREGDQWEGKVLHDFKT  259 (288)
Q Consensus       183 ~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D---~~i~iw~~~~~~~~~~~~~~~~~~~  259 (288)
                      .++...||.+.-.... .....+..+...+....||||+    ++|+..+.+   ..|.+||+...+    ...+.....
T Consensus       301 ~~g~~~ly~~~~~~~g-~~~~~lt~~~~~~~~p~wSPDG----~~Laf~~~~~g~~~I~v~dl~~g~----~~~Lt~~~~  371 (428)
T PRK01029        301 KDGRPRIYIMQIDPEG-QSPRLLTKKYRNSSCPAWSPDG----KKIAFCSVIKGVRQICVYDLATGR----DYQLTTSPE  371 (428)
T ss_pred             CCCCceEEEEECcccc-cceEEeccCCCCccceeECCCC----CEEEEEEcCCCCcEEEEEECCCCC----eEEccCCCC
Confidence            5666666655321000 0112233334456788999985    567766543   368899886432    122222223


Q ss_pred             CeEEEEeecCCCEEEEEeC---CCcEEEeEc
Q 036510          260 PVYRVSWSLTGNILAVADG---NNNVTLWEE  287 (288)
Q Consensus       260 ~i~~~~~spdg~~l~s~~~---d~~v~~w~~  287 (288)
                      .+....|+|||+.|+..+.   ...|.++++
T Consensus       372 ~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl  402 (428)
T PRK01029        372 NKESPSWAIDSLHLVYSAGNSNESELYLISL  402 (428)
T ss_pred             CccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence            4677999999998876543   245666663

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.08  E-value=3.2e-08  Score=87.39  Aligned_cols=188  Identities=15%  Similarity=0.214  Sum_probs=131.2

Q ss_pred             CCEEEEeeCCCcEEEeecCCCCceEEeEEee---cCCCceeEEEec------cC------------CCCeEEEEEeCCCc
Q 036510           69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFE---DHKSSVNSIDWA------PH------------ELGLCLACGSSDGN  127 (288)
Q Consensus        69 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~---~h~~~v~~l~~~------p~------------~~~~~l~sg~~d~~  127 (288)
                      ..+||....||.+|||+......   ...+.   .-.+...+..|.      |.            .....++-|...|.
T Consensus         5 ~~~~A~~~~~g~l~iw~t~~~~~---~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    5 LDYFALSTGDGRLRIWDTAKNQL---QQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             hheEeecCCCCeEEEEEccCcee---eeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            67999999999999999865431   11111   111223333332      21            11346778888999


Q ss_pred             EEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecccc
Q 036510          128 ISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQM  207 (288)
Q Consensus       128 i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  207 (288)
                      |-+|+...++ .........|...|.++.|+-+-              .-|.|+++|..+..|+....    ..+.....
T Consensus        82 v~~ys~~~g~-it~~~st~~h~~~v~~~~~~~~~--------------~ciyS~~ad~~v~~~~~~~~----~~~~~~~~  142 (541)
T KOG4547|consen   82 VLLYSVAGGE-ITAKLSTDKHYGNVNEILDAQRL--------------GCIYSVGADLKVVYILEKEK----VIIRIWKE  142 (541)
T ss_pred             EEEEEecCCe-EEEEEecCCCCCcceeeeccccc--------------CceEecCCceeEEEEecccc----eeeeeecc
Confidence            9999987653 22222235688899999876554              45889999999999998765    33445566


Q ss_pred             CCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecC-----CCEEEEE-eCCCc
Q 036510          208 HTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLT-----GNILAVA-DGNNN  281 (288)
Q Consensus       208 h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spd-----g~~l~s~-~~d~~  281 (288)
                      ....+.+++.+||+    .++++||.  .|++||++.++   ....+.+|.++|..++|--+     |.+++++ ..+.-
T Consensus       143 ~~~~~~sl~is~D~----~~l~~as~--~ik~~~~~~ke---vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~  213 (541)
T KOG4547|consen  143 QKPLVSSLCISPDG----KILLTASR--QIKVLDIETKE---VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERG  213 (541)
T ss_pred             CCCccceEEEcCCC----CEEEeccc--eEEEEEccCce---EEEEecCCCcceEEEEEEEeccccccceeeeccccccc
Confidence            66778999999984    67888876  79999998642   23556788899999999988     7776655 45666


Q ss_pred             EEEeEc
Q 036510          282 VTLWEE  287 (288)
Q Consensus       282 v~~w~~  287 (288)
                      +.+|.+
T Consensus       214 i~~w~v  219 (541)
T KOG4547|consen  214 ITVWVV  219 (541)
T ss_pred             eeEEEE
Confidence            778864

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.07  E-value=1.3e-09  Score=106.45  Aligned_cols=187  Identities=17%  Similarity=0.298  Sum_probs=130.8

Q ss_pred             ccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeec
Q 036510           55 KGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTAR  134 (288)
Q Consensus        55 ~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~  134 (288)
                      -..|..+. +|+. ..+.+||+.||.|++|.-..+.....-++. + ...|+.+.|+-.  |..+..+..||.|.+|...
T Consensus      2208 v~~v~r~~-sHp~-~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g-~s~vtr~~f~~q--Gnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2208 VENVRRMT-SHPS-DPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-G-NSRVTRSRFNHQ--GNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred             cCceeeec-CCCC-CceEEecCCCceEEEEeccCCCeEEEeecc-C-cchhhhhhhccc--CCceeeeccCCceeecccC
Confidence            34454444 3443 468899999999999988665532222222 2 378999999876  4456778889999999875


Q ss_pred             CCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEE---eecCCcEEEEEEeCCceeeeeeeccccCCcc
Q 036510          135 ADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCS---GGCDNTVKVWKLYNGIWKMDCFPALQMHTDW  211 (288)
Q Consensus       135 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s---~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~  211 (288)
                      .    .++.-.+.|+.....+.|-.                ..+++   .+.++++.+||..-.. ..-+++  ..|.+.
T Consensus      2282 p----k~~~s~qchnk~~~Df~Fi~----------------s~~~tag~s~d~~n~~lwDtl~~~-~~s~v~--~~H~~g 2338 (2439)
T KOG1064|consen 2282 P----KPYTSWQCHNKALSDFRFIG----------------SLLATAGRSSDNRNVCLWDTLLPP-MNSLVH--TCHDGG 2338 (2439)
T ss_pred             C----cceeccccCCccccceeeee----------------hhhhccccCCCCCcccchhcccCc-ccceee--eecCCC
Confidence            2    22334456877777776643                22333   3557789999975432 123444  789999


Q ss_pred             eEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          212 VRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       212 V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ++++.+.|.    .++|.||+.+|.|++||++..      ++.|.+..      +. ...+|++|++.|.++||++
T Consensus      2339 aT~l~~~P~----~qllisggr~G~v~l~D~rqr------ql~h~~~~------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2339 ATVLAYAPK----HQLLISGGRKGEVCLFDIRQR------QLRHTFQA------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred             ceEEEEcCc----ceEEEecCCcCcEEEeehHHH------HHHHHhhh------hh-hhheeeccCcccceEEEEc
Confidence            999999997    478999999999999999854      23343333      33 5678999999999999984

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.07  E-value=3.6e-07  Score=80.21  Aligned_cols=238  Identities=13%  Similarity=0.095  Sum_probs=122.7

Q ss_pred             EEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEE-eeCCCcEEEeecCCCCceE
Q 036510           15 HDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILAS-CSFDGTVIIWKEGNSNEWI   93 (288)
Q Consensus        15 ~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s-~s~d~~v~iwd~~~~~~~~   93 (288)
                      ..+.|+|||+++..++.|+.|.++|+...  +.+.++..-.. ..+++++++  |++++. .-..+.+.++|.++.+   
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~--~~v~~i~~G~~-~~~i~~s~D--G~~~~v~n~~~~~v~v~D~~tle---  111 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATG--KVVATIKVGGN-PRGIAVSPD--GKYVYVANYEPGTVSVIDAETLE---  111 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSS--SEEEEEE-SSE-EEEEEE--T--TTEEEEEEEETTEEEEEETTT-----
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcc--cEEEEEecCCC-cceEEEcCC--CCEEEEEecCCCceeEecccccc---
Confidence            34679999999999999999999998543  56666665343 477999865  777764 4579999999987654   


Q ss_pred             EeEEeec-------CCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCce
Q 036510           94 KDHVFED-------HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGAL  166 (288)
Q Consensus        94 ~~~~~~~-------h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~  166 (288)
                      ..+.++.       ....+.++-.+|.. ...+++--..+.|.+-|......... ... ..........|+|+++.   
T Consensus       112 ~v~~I~~~~~~~~~~~~Rv~aIv~s~~~-~~fVv~lkd~~~I~vVdy~d~~~~~~-~~i-~~g~~~~D~~~dpdgry---  185 (369)
T PF02239_consen  112 PVKTIPTGGMPVDGPESRVAAIVASPGR-PEFVVNLKDTGEIWVVDYSDPKNLKV-TTI-KVGRFPHDGGFDPDGRY---  185 (369)
T ss_dssp             EEEEEE--EE-TTTS---EEEEEE-SSS-SEEEEEETTTTEEEEEETTTSSCEEE-EEE-E--TTEEEEEE-TTSSE---
T ss_pred             ceeecccccccccccCCCceeEEecCCC-CEEEEEEccCCeEEEEEeccccccce-eee-cccccccccccCcccce---
Confidence            2333322       22356667666653 33444444446776667654432211 111 12234556777777631   


Q ss_pred             ecccccCCCceeEEeecCCcEEEEEEeCCc--------------------------------------------------
Q 036510          167 VGSGFLDPVQKLCSGGCDNTVKVWKLYNGI--------------------------------------------------  196 (288)
Q Consensus       167 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--------------------------------------------------  196 (288)
                                +++.....+.|-++|..++.                                                  
T Consensus       186 ----------~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d  255 (369)
T PF02239_consen  186 ----------FLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHD  255 (369)
T ss_dssp             ----------EEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-ST
T ss_pred             ----------eeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccch
Confidence                      11111222222222221110                                                  


Q ss_pred             -eeeeeeeccccCCcceEEEEecCCCCCCCcEEEEE----eCCCcEEEEEeecCCCcccceEeecc----ccCeEEEEee
Q 036510          197 -WKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASA----SEDGKVIIWTVAREGDQWEGKVLHDF----KTPVYRVSWS  267 (288)
Q Consensus       197 -~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~----s~D~~i~iw~~~~~~~~~~~~~~~~~----~~~i~~~~~s  267 (288)
                       ...+.+..+...... .-+.-+|++    .++...    ...++|.++|.+..      +..+..    ..++.-+.|+
T Consensus       256 ~~~wkvv~~I~~~G~g-lFi~thP~s----~~vwvd~~~~~~~~~v~viD~~tl------~~~~~i~~~~~~~~~h~ef~  324 (369)
T PF02239_consen  256 DYAWKVVKTIPTQGGG-LFIKTHPDS----RYVWVDTFLNPDADTVQVIDKKTL------KVVKTITPGPGKRVVHMEFN  324 (369)
T ss_dssp             TTBTSEEEEEE-SSSS---EE--TT-----SEEEEE-TT-SSHT-EEEEECCGT------EEEE-HHHHHT--EEEEEE-
T ss_pred             hhcCeEEEEEECCCCc-ceeecCCCC----ccEEeeccCCCCCceEEEEECcCc------ceeEEEeccCCCcEeccEEC
Confidence             001122222222223 445667774    345555    45678999998753      222222    2358899999


Q ss_pred             cCCCEEEEEeC--CCcEEEeEc
Q 036510          268 LTGNILAVADG--NNNVTLWEE  287 (288)
Q Consensus       268 pdg~~l~s~~~--d~~v~~w~~  287 (288)
                      +||+++..+.-  ++.|.++|.
T Consensus       325 ~dG~~v~vS~~~~~~~i~v~D~  346 (369)
T PF02239_consen  325 PDGKEVWVSVWDGNGAIVVYDA  346 (369)
T ss_dssp             TTSSEEEEEEE--TTEEEEEET
T ss_pred             CCCCEEEEEEecCCCEEEEEEC
Confidence            99998776654  346999984

...

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.07  E-value=3.1e-06  Score=71.17  Aligned_cols=256  Identities=13%  Similarity=0.195  Sum_probs=154.0

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCC---CcEEEEEeCCCCcee--eEEEeccccCeEEEEecCCCCCCEEEEee-CCCcEE
Q 036510            9 GHEDTVHDVAMDYYGKRLATASSD---YSIKIIGVGNNTSQH--LAKLSGHKGAVWEVAWAHPKFGSILASCS-FDGTVI   82 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l~s~~~d---~~i~lwd~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~d~~v~   82 (288)
                      .+.+..+=++|+|++++|.++..+   +.|.-|.++...++.  +........+-+.++.+++  +++++++. .-|.|.
T Consensus        37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~--g~~vf~AnY~~g~v~  114 (346)
T COG2706          37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDED--GRFVFVANYHSGSVS  114 (346)
T ss_pred             cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCC--CCEEEEEEccCceEE
Confidence            445566778999999999888765   778888886533322  2221111223367888754  78887776 368899


Q ss_pred             EeecCCCCceEEeEEeecCCCc----------eeEEEeccCCCCeEEEEE--eCCCcEEEEeecCCCCeeeEEeec-cCC
Q 036510           83 IWKEGNSNEWIKDHVFEDHKSS----------VNSIDWAPHELGLCLACG--SSDGNISVFTARADGGWDTSRIDQ-AHP  149 (288)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~~~----------v~~l~~~p~~~~~~l~sg--~~d~~i~i~d~~~~~~~~~~~~~~-~~~  149 (288)
                      ++-+...+..........|.+.          +-+..+.|+  ++++++.  +.| .|.+|++..+ .+....... .-.
T Consensus       115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~--~~~l~v~DLG~D-ri~~y~~~dg-~L~~~~~~~v~~G  190 (346)
T COG2706         115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPD--GRYLVVPDLGTD-RIFLYDLDDG-KLTPADPAEVKPG  190 (346)
T ss_pred             EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCC--CCEEEEeecCCc-eEEEEEcccC-ccccccccccCCC
Confidence            9877542221111122234444          778889998  5555555  444 5889998843 332221111 123


Q ss_pred             CCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccc----c--CCcceEEEEecCCCCC
Q 036510          150 VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQ----M--HTDWVRDVAWAPNLGL  223 (288)
Q Consensus       150 ~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~--h~~~V~~v~~sp~~~~  223 (288)
                      .+-+-|.|.|++.             -.-+...-+++|-+|.......+++.++.+.    .  ...+.-+|..+|++  
T Consensus       191 ~GPRHi~FHpn~k-------------~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dG--  255 (346)
T COG2706         191 AGPRHIVFHPNGK-------------YAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDG--  255 (346)
T ss_pred             CCcceEEEcCCCc-------------EEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCC--
Confidence            4567899999873             1123556688999999877433344444321    1  23357788999984  


Q ss_pred             CCcEEEEEeC-CCcEEEEEeecCCCcccceEee-ccccCeEEEEeecCCCEEEEEeCC-CcEEEeEc
Q 036510          224 PKSTIASASE-DGKVIIWTVAREGDQWEGKVLH-DFKTPVYRVSWSLTGNILAVADGN-NNVTLWEE  287 (288)
Q Consensus       224 ~~~~l~s~s~-D~~i~iw~~~~~~~~~~~~~~~-~~~~~i~~~~~spdg~~l~s~~~d-~~v~~w~~  287 (288)
                        ++|-+... ...|-+|.+.......+..... .+........|+|+|++|+++..| .+|.++.+
T Consensus       256 --rFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~  320 (346)
T COG2706         256 --RFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFER  320 (346)
T ss_pred             --CEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEE
Confidence              45544443 4478888887553321111111 222346789999999999988764 46888763

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.06  E-value=9.3e-09  Score=90.55  Aligned_cols=190  Identities=18%  Similarity=0.314  Sum_probs=125.8

Q ss_pred             CEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEe---EEeec
Q 036510           24 KRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKD---HVFED  100 (288)
Q Consensus        24 ~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~---~~~~~  100 (288)
                      .+++.|+.. .|.=.++  ..++.+..+.--.+.++.+..++-  ..+|++|+.+|.|..||.++......+   ..+..
T Consensus       147 Dly~~gsg~-evYRlNL--EqGrfL~P~~~~~~~lN~v~in~~--hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s  221 (703)
T KOG2321|consen  147 DLYLVGSGS-EVYRLNL--EQGRFLNPFETDSGELNVVSINEE--HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNS  221 (703)
T ss_pred             cEEEeecCc-ceEEEEc--cccccccccccccccceeeeecCc--cceEEecccCceEEEecchhhhhheeeecccccCC
Confidence            444444444 3333344  334556666666688999988643  578999999999999999764321111   11122


Q ss_pred             CCC-----ceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCC
Q 036510          101 HKS-----SVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPV  175 (288)
Q Consensus       101 h~~-----~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~  175 (288)
                      |.+     .|++++|+-+  +..+++|..+|.+.|||+|....+  ....+....+|..+.|.+.+.            .
T Consensus       222 ~pg~~~~~svTal~F~d~--gL~~aVGts~G~v~iyDLRa~~pl--~~kdh~~e~pi~~l~~~~~~~------------q  285 (703)
T KOG2321|consen  222 HPGGDAAPSVTALKFRDD--GLHVAVGTSTGSVLIYDLRASKPL--LVKDHGYELPIKKLDWQDTDQ------------Q  285 (703)
T ss_pred             CccccccCcceEEEecCC--ceeEEeeccCCcEEEEEcccCCce--eecccCCccceeeecccccCC------------C
Confidence            333     3999999865  788999999999999999976432  222233456788999987642            1


Q ss_pred             ceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510          176 QKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR  244 (288)
Q Consensus       176 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~  244 (288)
                      ..++|. ....++|||..+|.    ....+. ....++.+++-|+.    .++.+|..+..+..|-+-.
T Consensus       286 ~~v~S~-Dk~~~kiWd~~~Gk----~~asiE-pt~~lND~C~~p~s----Gm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  286 NKVVSM-DKRILKIWDECTGK----PMASIE-PTSDLNDFCFVPGS----GMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             ceEEec-chHHhhhcccccCC----ceeecc-ccCCcCceeeecCC----ceEEEecCCCcceeEEccc
Confidence            345544 34569999998873    222222 23348999999985    5899999999888876643

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.06  E-value=5.7e-09  Score=86.64  Aligned_cols=128  Identities=22%  Similarity=0.324  Sum_probs=96.5

Q ss_pred             CCCCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCC--------------------------------------
Q 036510            1 MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGN--------------------------------------   42 (288)
Q Consensus         1 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~--------------------------------------   42 (288)
                      |.+.+....|...|..+-|+....++++.+.|+.+.-.-...                                      
T Consensus       104 m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~  183 (404)
T KOG1409|consen  104 MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLE  183 (404)
T ss_pred             cchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEe
Confidence            445556678999999999998888999999887654311100                                      


Q ss_pred             -CCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEE
Q 036510           43 -NTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLAC  121 (288)
Q Consensus        43 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~s  121 (288)
                       ..-..+.++.+|.+.+++++|.+.  ..+|.||..|..+.+||+.-.. . ....+.+|.+.|..+..-+.  .+++.+
T Consensus       184 ~~~~~~i~~~~~h~~~~~~l~Wd~~--~~~LfSg~~d~~vi~wdigg~~-g-~~~el~gh~~kV~~l~~~~~--t~~l~S  257 (404)
T KOG1409|consen  184 QNGCQLITTFNGHTGEVTCLKWDPG--QRLLFSGASDHSVIMWDIGGRK-G-TAYELQGHNDKVQALSYAQH--TRQLIS  257 (404)
T ss_pred             ecCCceEEEEcCcccceEEEEEcCC--CcEEEeccccCceEEEeccCCc-c-eeeeeccchhhhhhhhhhhh--heeeee
Confidence             000235667799999999999753  5789999999999999986432 2 33456789999999876655  567899


Q ss_pred             EeCCCcEEEEeec
Q 036510          122 GSSDGNISVFTAR  134 (288)
Q Consensus       122 g~~d~~i~i~d~~  134 (288)
                      ++.||.|.+|+..
T Consensus       258 ~~edg~i~~w~mn  270 (404)
T KOG1409|consen  258 CGEDGGIVVWNMN  270 (404)
T ss_pred             ccCCCeEEEEecc
Confidence            9999999999985

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.05  E-value=2.9e-07  Score=82.93  Aligned_cols=205  Identities=14%  Similarity=0.169  Sum_probs=116.3

Q ss_pred             cEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC---CcEEEeecCCCCceEEeEEeecCCCceeEEEe
Q 036510           34 SIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD---GTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDW  110 (288)
Q Consensus        34 ~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~  110 (288)
                      .+.++|.++.   ....+..+...+....|+++  |+.|+..+.+   ..|.+|++.++..    ..+....+.+...+|
T Consensus       180 ~l~~~d~~g~---~~~~l~~~~~~~~~p~wSpD--G~~la~~s~~~~~~~l~~~~l~~g~~----~~l~~~~g~~~~~~~  250 (430)
T PRK00178        180 TLQRSDYDGA---RAVTLLQSREPILSPRWSPD--GKRIAYVSFEQKRPRIFVQNLDTGRR----EQITNFEGLNGAPAW  250 (430)
T ss_pred             EEEEECCCCC---CceEEecCCCceeeeeECCC--CCEEEEEEcCCCCCEEEEEECCCCCE----EEccCCCCCcCCeEE
Confidence            3556666533   24455667778899999975  7888776643   3688888876542    123223344567899


Q ss_pred             ccCCCCeEEEEEeCCC--cEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCC--c
Q 036510          111 APHELGLCLACGSSDG--NISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDN--T  186 (288)
Q Consensus       111 ~p~~~~~~l~sg~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~--~  186 (288)
                      +|++ ..++.+...++  .|++||+..+..    .....+........|+|++.             .++.++..++  .
T Consensus       251 SpDG-~~la~~~~~~g~~~Iy~~d~~~~~~----~~lt~~~~~~~~~~~spDg~-------------~i~f~s~~~g~~~  312 (430)
T PRK00178        251 SPDG-SKLAFVLSKDGNPEIYVMDLASRQL----SRVTNHPAIDTEPFWGKDGR-------------TLYFTSDRGGKPQ  312 (430)
T ss_pred             CCCC-CEEEEEEccCCCceEEEEECCCCCe----EEcccCCCCcCCeEECCCCC-------------EEEEEECCCCCce
Confidence            9984 23333455555  577778765432    11222333455678999872             2333443333  4


Q ss_pred             EEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeC-CC--cEEEEEeecCCCcccceEeeccccCeEE
Q 036510          187 VKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE-DG--KVIIWTVAREGDQWEGKVLHDFKTPVYR  263 (288)
Q Consensus       187 i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~-D~--~i~iw~~~~~~~~~~~~~~~~~~~~i~~  263 (288)
                      |.++|+.++..  +.+ ...+  .......|+|++    ++|+..+. ++  .|.+||+....    ...+... .....
T Consensus       313 iy~~d~~~g~~--~~l-t~~~--~~~~~~~~Spdg----~~i~~~~~~~~~~~l~~~dl~tg~----~~~lt~~-~~~~~  378 (430)
T PRK00178        313 IYKVNVNGGRA--ERV-TFVG--NYNARPRLSADG----KTLVMVHRQDGNFHVAAQDLQRGS----VRILTDT-SLDES  378 (430)
T ss_pred             EEEEECCCCCE--EEe-ecCC--CCccceEECCCC----CEEEEEEccCCceEEEEEECCCCC----EEEccCC-CCCCC
Confidence            66666655431  111 1122  223456899985    56666654 33  47777765431    1222221 12235


Q ss_pred             EEeecCCCEEEEEeCC
Q 036510          264 VSWSLTGNILAVADGN  279 (288)
Q Consensus       264 ~~~spdg~~l~s~~~d  279 (288)
                      ..|+|||+.++..+.+
T Consensus       379 p~~spdg~~i~~~~~~  394 (430)
T PRK00178        379 PSVAPNGTMLIYATRQ  394 (430)
T ss_pred             ceECCCCCEEEEEEec
Confidence            6899999998887654

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.05  E-value=3.1e-07  Score=82.99  Aligned_cols=207  Identities=15%  Similarity=0.109  Sum_probs=111.3

Q ss_pred             cEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeC-CC--cEEEeecCCCCceEEeEEeecCCCceeEEEe
Q 036510           34 SIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSF-DG--TVIIWKEGNSNEWIKDHVFEDHKSSVNSIDW  110 (288)
Q Consensus        34 ~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-d~--~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~  110 (288)
                      .+.++|.++..   .+.+..+...+....|+|+  |+.|+..+. ++  .|.+||+..+..    ..+....+......|
T Consensus       199 ~l~i~d~dG~~---~~~l~~~~~~~~~p~wSPD--G~~La~~s~~~g~~~L~~~dl~tg~~----~~lt~~~g~~~~~~w  269 (448)
T PRK04792        199 QLMIADYDGYN---EQMLLRSPEPLMSPAWSPD--GRKLAYVSFENRKAEIFVQDIYTQVR----EKVTSFPGINGAPRF  269 (448)
T ss_pred             EEEEEeCCCCC---ceEeecCCCcccCceECCC--CCEEEEEEecCCCcEEEEEECCCCCe----EEecCCCCCcCCeeE
Confidence            55666765432   2345556778888999875  787876654 33  577778765432    112222333457899


Q ss_pred             ccCCCCeEEEEEeCCCc--EEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCc--
Q 036510          111 APHELGLCLACGSSDGN--ISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNT--  186 (288)
Q Consensus       111 ~p~~~~~~l~sg~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~--  186 (288)
                      +|++ ..++.+.+.++.  |+++|+..+. .   .....+........|+|++.             .++.++..++.  
T Consensus       270 SPDG-~~La~~~~~~g~~~Iy~~dl~tg~-~---~~lt~~~~~~~~p~wSpDG~-------------~I~f~s~~~g~~~  331 (448)
T PRK04792        270 SPDG-KKLALVLSKDGQPEIYVVDIATKA-L---TRITRHRAIDTEPSWHPDGK-------------SLIFTSERGGKPQ  331 (448)
T ss_pred             CCCC-CEEEEEEeCCCCeEEEEEECCCCC-e---EECccCCCCccceEECCCCC-------------EEEEEECCCCCce
Confidence            9985 234445566675  6666665432 1   22223333456788999872             23334433444  


Q ss_pred             EEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeC-CCcEEEEEeecCCCcccceEeeccccCeEEEE
Q 036510          187 VKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE-DGKVIIWTVAREGDQWEGKVLHDFKTPVYRVS  265 (288)
Q Consensus       187 i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~-D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~  265 (288)
                      |.++|+.++..  +.+ +..++  ......|+|++    ++|+..+. ++..+||-+......  ...+... .......
T Consensus       332 Iy~~dl~~g~~--~~L-t~~g~--~~~~~~~SpDG----~~l~~~~~~~g~~~I~~~dl~~g~--~~~lt~~-~~d~~ps  399 (448)
T PRK04792        332 IYRVNLASGKV--SRL-TFEGE--QNLGGSITPDG----RSMIMVNRTNGKFNIARQDLETGA--MQVLTST-RLDESPS  399 (448)
T ss_pred             EEEEECCCCCE--EEE-ecCCC--CCcCeeECCCC----CEEEEEEecCCceEEEEEECCCCC--eEEccCC-CCCCCce
Confidence            55556555431  111 12222  23456899985    45655554 454555543322111  1222221 1223458


Q ss_pred             eecCCCEEEEEeCC
Q 036510          266 WSLTGNILAVADGN  279 (288)
Q Consensus       266 ~spdg~~l~s~~~d  279 (288)
                      |+|||+.|+..+.+
T Consensus       400 ~spdG~~I~~~~~~  413 (448)
T PRK04792        400 VAPNGTMVIYSTTY  413 (448)
T ss_pred             ECCCCCEEEEEEec
Confidence            99999998877654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.04  E-value=1.5e-07  Score=84.73  Aligned_cols=222  Identities=17%  Similarity=0.151  Sum_probs=119.3

Q ss_pred             cccccceEEEEEcCCCCEEEEeeCC---CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEE-EeeCCC--cE
Q 036510            8 TGHEDTVHDVAMDYYGKRLATASSD---YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILA-SCSFDG--TV   81 (288)
Q Consensus         8 ~~h~~~v~~~~~s~~g~~l~s~~~d---~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~s~d~--~v   81 (288)
                      ..+...+...+|+|||++|+..+.+   ..+.+|++..+..+.+..   ..+.+...+|+++  |+.|+ +.+.++  .|
T Consensus       195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~---~~g~~~~~~~SpD--G~~la~~~~~~g~~~I  269 (430)
T PRK00178        195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN---FEGLNGAPAWSPD--GSKLAFVLSKDGNPEI  269 (430)
T ss_pred             ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC---CCCCcCCeEECCC--CCEEEEEEccCCCceE
Confidence            3556678888999999998876654   357778886543333322   2333456889875  67665 555555  56


Q ss_pred             EEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCC--cEEEEeecCCCCeeeEEeeccCCCCeeEEEeCC
Q 036510           82 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDG--NISVFTARADGGWDTSRIDQAHPVGVTSVSWAP  159 (288)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p  159 (288)
                      .++|+.++.    ...+..+........|+|++ ..++.+...++  .|.++++..+. ..... ..+  .......|+|
T Consensus       270 y~~d~~~~~----~~~lt~~~~~~~~~~~spDg-~~i~f~s~~~g~~~iy~~d~~~g~-~~~lt-~~~--~~~~~~~~Sp  340 (430)
T PRK00178        270 YVMDLASRQ----LSRVTNHPAIDTEPFWGKDG-RTLYFTSDRGGKPQIYKVNVNGGR-AERVT-FVG--NYNARPRLSA  340 (430)
T ss_pred             EEEECCCCC----eEEcccCCCCcCCeEECCCC-CEEEEEECCCCCceEEEEECCCCC-EEEee-cCC--CCccceEECC
Confidence            777876543    12344455556678899984 23333443444  45555654432 22111 111  1233567888


Q ss_pred             CCCCCceecccccCCCceeEEee-cCC--cEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeC-CC
Q 036510          160 STAPGALVGSGFLDPVQKLCSGG-CDN--TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE-DG  235 (288)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~l~s~~-~d~--~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~-D~  235 (288)
                      ++              +.++..+ .++  .|.++|+.++..  +.+..    ........|+|++    ++|+..+. ++
T Consensus       341 dg--------------~~i~~~~~~~~~~~l~~~dl~tg~~--~~lt~----~~~~~~p~~spdg----~~i~~~~~~~g  396 (430)
T PRK00178        341 DG--------------KTLVMVHRQDGNFHVAAQDLQRGSV--RILTD----TSLDESPSVAPNG----TMLIYATRQQG  396 (430)
T ss_pred             CC--------------CEEEEEEccCCceEEEEEECCCCCE--EEccC----CCCCCCceECCCC----CEEEEEEecCC
Confidence            87              3444333 233  477788876531  22211    1122345899985    55665554 34


Q ss_pred             cEEEEEeecCCCcccceEeeccccCeEEEEeecC
Q 036510          236 KVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLT  269 (288)
Q Consensus       236 ~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spd  269 (288)
                      .-++|-+...+..  ...+....+.+...+|+|-
T Consensus       397 ~~~l~~~~~~g~~--~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        397 RGVLMLVSINGRV--RLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             ceEEEEEECCCCc--eEECcCCCCCcCCCccCCC
Confidence            4334433322211  1222223345666777763

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.04  E-value=2.1e-07  Score=82.40  Aligned_cols=199  Identities=18%  Similarity=0.216  Sum_probs=134.0

Q ss_pred             CCCCEEEEeeCCCcEEEEEeCCCCcee-eEEEeccccCeEEEEec------C------------CCCCCEEEEeeCCCcE
Q 036510           21 YYGKRLATASSDYSIKIIGVGNNTSQH-LAKLSGHKGAVWEVAWA------H------------PKFGSILASCSFDGTV   81 (288)
Q Consensus        21 ~~g~~l~s~~~d~~i~lwd~~~~~~~~-~~~~~~h~~~v~~~~~~------~------------~~~~~~l~s~s~d~~v   81 (288)
                      |.+.|+|....||.+|+|+........ +.....-.+...++.|.      +            ..+-..++-|-..|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            456889999999999999985432111 11111111222233331      0            0012466778889999


Q ss_pred             EEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCC
Q 036510           82 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPST  161 (288)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~  161 (288)
                      -+++...+. .....+-..|.+.|+++.++-+  ...+.+++.|.++..|+.+....   ...-++-+..+.++..+|++
T Consensus        83 ~~ys~~~g~-it~~~st~~h~~~v~~~~~~~~--~~ciyS~~ad~~v~~~~~~~~~~---~~~~~~~~~~~~sl~is~D~  156 (541)
T KOG4547|consen   83 LLYSVAGGE-ITAKLSTDKHYGNVNEILDAQR--LGCIYSVGADLKVVYILEKEKVI---IRIWKEQKPLVSSLCISPDG  156 (541)
T ss_pred             EEEEecCCe-EEEEEecCCCCCcceeeecccc--cCceEecCCceeEEEEeccccee---eeeeccCCCccceEEEcCCC
Confidence            999886544 1111122468999999988754  56789999999999999876533   23334556668888889986


Q ss_pred             CCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCC-CCCCCcEEEEE-eCCCcEEE
Q 036510          162 APGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPN-LGLPKSTIASA-SEDGKVII  239 (288)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-~~~~~~~l~s~-s~D~~i~i  239 (288)
                                    ..+++++  +.|++||++++    +.+..+.||.++|++++|-.+ .+..+.+|++. ..+.-|.+
T Consensus       157 --------------~~l~~as--~~ik~~~~~~k----evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~  216 (541)
T KOG4547|consen  157 --------------KILLTAS--RQIKVLDIETK----EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITV  216 (541)
T ss_pred             --------------CEEEecc--ceEEEEEccCc----eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeE
Confidence                          5677765  78999999987    678889999999999999876 22224455554 45778889


Q ss_pred             EEeecC
Q 036510          240 WTVARE  245 (288)
Q Consensus       240 w~~~~~  245 (288)
                      |-+...
T Consensus       217 w~v~~~  222 (541)
T KOG4547|consen  217 WVVEKE  222 (541)
T ss_pred             EEEEcc
Confidence            988753

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.03  E-value=1.7e-07  Score=75.63  Aligned_cols=239  Identities=10%  Similarity=0.013  Sum_probs=144.7

Q ss_pred             EEEEcCC-----CCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510           16 DVAMDYY-----GKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN   90 (288)
Q Consensus        16 ~~~~s~~-----g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~   90 (288)
                      ++.|.|.     --+|+.||.-|...+|...... .+.+.-.-|.-.|.-+.-.-+ ...-+..++.|.++++.++....
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~-~h~~~cd~snn~v~~~~r~cd-~~~~~~i~sndht~k~~~~~~~s  149 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTND-GHLYQCDVSNNDVTLVKRYCD-LKFPLNIASNDHTGKTMVVSGDS  149 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcc-cceeeecccccchhhhhhhcc-cccceeeccCCcceeEEEEecCc
Confidence            3556653     2478999999999999875332 233333444433322111111 12346778999999999886432


Q ss_pred             ceEEeEEeecCCC--ceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceec
Q 036510           91 EWIKDHVFEDHKS--SVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG  168 (288)
Q Consensus        91 ~~~~~~~~~~h~~--~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~  168 (288)
                      .   .  ...|..  ..+++.++++  +..+++.+....|..|.+................+.-.+.+|+...       
T Consensus       150 ~---~--~~~h~~~~~~ns~~~snd--~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~-------  215 (344)
T KOG4532|consen  150 N---K--FAVHNQNLTQNSLHYSND--PSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND-------  215 (344)
T ss_pred             c---c--ceeeccccceeeeEEcCC--CceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc-------
Confidence            1   1  112333  3788999988  5677888888999999997655433322233334455667777665       


Q ss_pred             ccccCCCceeEEeecCCcEEEEEEeCCce-eeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCC
Q 036510          169 SGFLDPVQKLCSGGCDNTVKVWKLYNGIW-KMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGD  247 (288)
Q Consensus       169 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~  247 (288)
                             ..++++..|+++.|||++.-.. +.+.-.+-..|.+.++.+.|+|.+.+  .+|.-.-.-+.+.+-|.+....
T Consensus       216 -------~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~l--DLLf~sEhfs~~hv~D~R~~~~  286 (344)
T KOG4532|consen  216 -------LQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLL--DLLFISEHFSRVHVVDTRNYVN  286 (344)
T ss_pred             -------ceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcc--eEEEEecCcceEEEEEcccCce
Confidence                   5799999999999999986311 11212223458889999999985322  2333333355788888876432


Q ss_pred             cccceE----eeccc-cCeEEEEeecCCCEEEEEeCC
Q 036510          248 QWEGKV----LHDFK-TPVYRVSWSLTGNILAVADGN  279 (288)
Q Consensus       248 ~~~~~~----~~~~~-~~i~~~~~spdg~~l~s~~~d  279 (288)
                      .....+    ...+. ..|....|+.++..+-+..++
T Consensus       287 ~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~  323 (344)
T KOG4532|consen  287 HQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL  323 (344)
T ss_pred             eeEEecCccccccccccccccccccCCCcccccccch
Confidence            211111    01122 247888898888777666553

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.03  E-value=4.6e-06  Score=72.89  Aligned_cols=210  Identities=13%  Similarity=0.178  Sum_probs=125.4

Q ss_pred             EEEEEcCCCCEEEEeeC-CCcEEEEEeCCCCceeeEE--Eecc-----------ccCeEEEEecCCCCCCEEEEe-eCCC
Q 036510           15 HDVAMDYYGKRLATASS-DYSIKIIGVGNNTSQHLAK--LSGH-----------KGAVWEVAWAHPKFGSILASC-SFDG   79 (288)
Q Consensus        15 ~~~~~s~~g~~l~s~~~-d~~i~lwd~~~~~~~~~~~--~~~h-----------~~~v~~~~~~~~~~~~~l~s~-s~d~   79 (288)
                      ..++++|++++|+++.+ ++++.+++++.. +.....  +..|           ..-..++.|+|+  +++++.. -...
T Consensus        90 ~~i~~~~~g~~l~vany~~g~v~v~~l~~~-g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd--g~~v~v~dlG~D  166 (345)
T PF10282_consen   90 CHIAVDPDGRFLYVANYGGGSVSVFPLDDD-GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD--GRFVYVPDLGAD  166 (345)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTT-SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT--SSEEEEEETTTT
T ss_pred             EEEEEecCCCEEEEEEccCCeEEEEEccCC-cccceeeeecccCCCCCcccccccccceeEEECCC--CCEEEEEecCCC
Confidence            45889999999999886 899999999642 222111  1111           123577888865  6655544 3456


Q ss_pred             cEEEeecCCCC-ceEEeEEee-cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecC-CCCeeeEEeec----cCC--C
Q 036510           80 TVIIWKEGNSN-EWIKDHVFE-DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA-DGGWDTSRIDQ----AHP--V  150 (288)
Q Consensus        80 ~v~iwd~~~~~-~~~~~~~~~-~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~-~~~~~~~~~~~----~~~--~  150 (288)
                      .|.+|++.... .......+. .....-..+.|+|++ ..+.+....++.|.+|++.. .+.+.......    ...  .
T Consensus       167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg-~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~  245 (345)
T PF10282_consen  167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDG-KYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGEN  245 (345)
T ss_dssp             EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTS-SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSS
T ss_pred             EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCc-CEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccC
Confidence            88899886543 222222232 223346789999985 45667778899999999883 22222222111    111  2


Q ss_pred             CeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEE
Q 036510          151 GVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIAS  230 (288)
Q Consensus       151 ~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s  230 (288)
                      ....|.++|++.             .+.++.-..++|.++++....-.++.+..+......-+.+.++|++    ++|+.
T Consensus       246 ~~~~i~ispdg~-------------~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g----~~l~V  308 (345)
T PF10282_consen  246 APAEIAISPDGR-------------FLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDG----RYLYV  308 (345)
T ss_dssp             SEEEEEE-TTSS-------------EEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTS----SEEEE
T ss_pred             CceeEEEecCCC-------------EEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCC----CEEEE
Confidence            466788888872             3455566678899999943211233333333223334889999985    56666


Q ss_pred             Ee-CCCcEEEEEeecC
Q 036510          231 AS-EDGKVIIWTVARE  245 (288)
Q Consensus       231 ~s-~D~~i~iw~~~~~  245 (288)
                      ++ .++.|.+|++...
T Consensus       309 a~~~s~~v~vf~~d~~  324 (345)
T PF10282_consen  309 ANQDSNTVSVFDIDPD  324 (345)
T ss_dssp             EETTTTEEEEEEEETT
T ss_pred             EecCCCeEEEEEEeCC
Confidence            65 5779999998744

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.02  E-value=1.5e-09  Score=98.04  Aligned_cols=225  Identities=18%  Similarity=0.237  Sum_probs=149.4

Q ss_pred             cccccccceEEEEEcCCC-CEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510            6 IETGHEDTVHDVAMDYYG-KRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW   84 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw   84 (288)
                      .+-||..+|+.+.|.|.. ..|++++.|..+.+||...+. ..+.....-......++|+. .++..+|+ +..+.|.+|
T Consensus       109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~-~p~ys~~~w~s~asqVkwny-k~p~vlas-shg~~i~vw  185 (1081)
T KOG0309|consen  109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH-RPFYSTSSWRSAASQVKWNY-KDPNVLAS-SHGNDIFVW  185 (1081)
T ss_pred             EEecCccceeccccCCCCCcceeeccccccceeeeccCCC-cceeeeecccccCceeeecc-cCcchhhh-ccCCceEEE
Confidence            355899999999999864 679999999999999987554 45666655555668899975 34666665 777899999


Q ss_pred             ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510           85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG  164 (288)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~  164 (288)
                      |.+.+.+  ....+++|...|+.++|+.-- -..+.+.+.|++++.||........  ......+.+|..-.+-|.+.. 
T Consensus       186 d~r~gs~--pl~s~K~~vs~vn~~~fnr~~-~s~~~s~~~d~tvkfw~y~kSt~e~--~~~vtt~~piw~~r~~Pfg~g-  259 (1081)
T KOG0309|consen  186 DLRKGST--PLCSLKGHVSSVNSIDFNRFK-YSEIMSSSNDGTVKFWDYSKSTTES--KRTVTTNFPIWRGRYLPFGEG-  259 (1081)
T ss_pred             eccCCCc--ceEEecccceeeehHHHhhhh-hhhhcccCCCCceeeeccccccccc--ceeccccCcceeccccccCce-
Confidence            9987765  345678899999999987642 2246788899999999986532211  111122334444445555421 


Q ss_pred             ceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCC------CCCCcEEEEEeCCCcEE
Q 036510          165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNL------GLPKSTIASASEDGKVI  238 (288)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~------~~~~~~l~s~s~D~~i~  238 (288)
                        +..-.+..++.+----.++.-+.|+..++   .+.++.+.||++.|..+.|-...      ...+-+|++-|.|.++|
T Consensus       260 --~~~mp~~G~n~v~~~~c~n~d~e~n~~~~---~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lr  334 (1081)
T KOG0309|consen  260 --YCIMPMVGGNMVPQLRCENSDLEWNVFDL---NTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLR  334 (1081)
T ss_pred             --eEeccccCCeeeeeccccchhhhhccccC---CcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceE
Confidence              11011111111112223444455555543   25678899999999988886532      11245799999999999


Q ss_pred             EEEeec
Q 036510          239 IWTVAR  244 (288)
Q Consensus       239 iw~~~~  244 (288)
                      +|-+..
T Consensus       335 lWpI~~  340 (1081)
T KOG0309|consen  335 LWPIDS  340 (1081)
T ss_pred             eeeccH
Confidence            998864

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.01  E-value=5.1e-09  Score=91.98  Aligned_cols=255  Identities=15%  Similarity=0.169  Sum_probs=156.1

Q ss_pred             ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCC-----CceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcE
Q 036510            7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNN-----TSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTV   81 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v   81 (288)
                      +.||+..|..+.--.+.+-++|++.|++|++|.+..+     +..+-.++..|+.+|.++.|-.+  .++++  |.|+-+
T Consensus       731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~--lr~i~--ScD~gi  806 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD--LRSIA--SCDGGI  806 (1034)
T ss_pred             ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec--cceee--eccCcc
Confidence            5699998888765456677999999999999988521     22356788999999999999753  45555  568999


Q ss_pred             EEeecCCCCceEEeEE--eecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEee--ccCCCCeeEEEe
Q 036510           82 IIWKEGNSNEWIKDHV--FEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRID--QAHPVGVTSVSW  157 (288)
Q Consensus        82 ~iwd~~~~~~~~~~~~--~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~v~~i~~  157 (288)
                      .+||..-+.....+..  ..+..+.|.|+. +- ....+++.++...+++++|.|..+=...+++-  .+-+..+.++..
T Consensus       807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv-~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV  884 (1034)
T KOG4190|consen  807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NV-DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV  884 (1034)
T ss_pred             eeecccccchhHhhhcCcccCCCceeEecc-cC-cchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence            9999765432111111  112334566663 11 22344555588999999999875422333332  223345667776


Q ss_pred             CCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCcee-----ee-------------eeeccccCCcceEEEEecC
Q 036510          158 APSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWK-----MD-------------CFPALQMHTDWVRDVAWAP  219 (288)
Q Consensus       158 ~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~-------------~~~~~~~h~~~V~~v~~sp  219 (288)
                      .|.+              +.++.+-..|+|-+.|.++|..-     .+             ..++-..|.   .+|.|+.
T Consensus       885 a~~G--------------N~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHs---laVnWha  947 (1034)
T KOG4190|consen  885 ADKG--------------NKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHS---LAVNWHA  947 (1034)
T ss_pred             ccCc--------------chhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccce---eEeeehh
Confidence            6655              66777777888888888877310     00             111112333   3444544


Q ss_pred             CCCC-----------------CCcEEEEEeCCCcEEEEEeecCCCc-ccceE--eeccccCeEEEEeecCCCEEEEEeCC
Q 036510          220 NLGL-----------------PKSTIASASEDGKVIIWTVAREGDQ-WEGKV--LHDFKTPVYRVSWSLTGNILAVADGN  279 (288)
Q Consensus       220 ~~~~-----------------~~~~l~s~s~D~~i~iw~~~~~~~~-~~~~~--~~~~~~~i~~~~~spdg~~l~s~~~d  279 (288)
                      -.+.                 -+--||++-..+.+.+|.-....+. ...+.  -.++.+..++++--|-..-++.|.+.
T Consensus       948 ldgimh~q~kpppepahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~ 1027 (1034)
T KOG4190|consen  948 LDGIMHLQDKPPPEPAHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEH 1027 (1034)
T ss_pred             cCCeeeeccCCCCcchhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCC
Confidence            2110                 0124778877778888853321110 00001  12455677888888888878889888


Q ss_pred             CcEEE
Q 036510          280 NNVTL  284 (288)
Q Consensus       280 ~~v~~  284 (288)
                      |.|.+
T Consensus      1028 G~IaL 1032 (1034)
T KOG4190|consen 1028 GAIAL 1032 (1034)
T ss_pred             Cceee
Confidence            98876

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.99  E-value=4.5e-07  Score=81.96  Aligned_cols=217  Identities=15%  Similarity=0.147  Sum_probs=112.9

Q ss_pred             cccceEEEEEcCCCCEEEEeeCC-C--cEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEE-EeeCCCc--EEE
Q 036510           10 HEDTVHDVAMDYYGKRLATASSD-Y--SIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILA-SCSFDGT--VII   83 (288)
Q Consensus        10 h~~~v~~~~~s~~g~~l~s~~~d-~--~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~s~d~~--v~i   83 (288)
                      +...+....|+|||++|+-.+.+ +  .|.++|+..+..+.+..+.+   .....+|+++  |+.|+ +.+.++.  |.+
T Consensus       216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g---~~~~~~wSPD--G~~La~~~~~~g~~~Iy~  290 (448)
T PRK04792        216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG---INGAPRFSPD--GKKLALVLSKDGQPEIYV  290 (448)
T ss_pred             CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC---CcCCeeECCC--CCEEEEEEeCCCCeEEEE
Confidence            34566678999999988776543 3  46667775443333333332   3346789875  67665 5566776  555


Q ss_pred             eecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCc--EEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCC
Q 036510           84 WKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGN--ISVFTARADGGWDTSRIDQAHPVGVTSVSWAPST  161 (288)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~  161 (288)
                      +|+.++.    ...+..+........|+|++ ..++.+...++.  |.++|+..+. ..... ..++  ......|+|++
T Consensus       291 ~dl~tg~----~~~lt~~~~~~~~p~wSpDG-~~I~f~s~~~g~~~Iy~~dl~~g~-~~~Lt-~~g~--~~~~~~~SpDG  361 (448)
T PRK04792        291 VDIATKA----LTRITRHRAIDTEPSWHPDG-KSLIFTSERGGKPQIYRVNLASGK-VSRLT-FEGE--QNLGGSITPDG  361 (448)
T ss_pred             EECCCCC----eEECccCCCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCC-EEEEe-cCCC--CCcCeeECCCC
Confidence            5665443    12344455556778999985 233444444454  4445554332 21111 1222  23356889987


Q ss_pred             CCCceecccccCCCceeE-EeecCCcEEE--EEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEe-CCCc-
Q 036510          162 APGALVGSGFLDPVQKLC-SGGCDNTVKV--WKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASAS-EDGK-  236 (288)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~-s~~~d~~i~i--wd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s-~D~~-  236 (288)
                                    +.++ +...++...|  +|+.++..  +.   +... .......|+|++    ++|+..+ .++. 
T Consensus       362 --------------~~l~~~~~~~g~~~I~~~dl~~g~~--~~---lt~~-~~d~~ps~spdG----~~I~~~~~~~g~~  417 (448)
T PRK04792        362 --------------RSMIMVNRTNGKFNIARQDLETGAM--QV---LTST-RLDESPSVAPNG----TMVIYSTTYQGKQ  417 (448)
T ss_pred             --------------CEEEEEEecCCceEEEEEECCCCCe--EE---ccCC-CCCCCceECCCC----CEEEEEEecCCce
Confidence                          3443 3333444444  56555421  11   1111 112244799985    4555544 4444 


Q ss_pred             -EEEEEeecCCCcccceEeeccccCeEEEEeec
Q 036510          237 -VIIWTVAREGDQWEGKVLHDFKTPVYRVSWSL  268 (288)
Q Consensus       237 -i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~sp  268 (288)
                       +.+++...  .  ....+....+.+...+|+|
T Consensus       418 ~l~~~~~~G--~--~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        418 VLAAVSIDG--R--FKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             EEEEEECCC--C--ceEECcCCCCCcCCCccCC
Confidence             55555431  1  1122333334566778877

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.96  E-value=4.4e-08  Score=88.59  Aligned_cols=245  Identities=17%  Similarity=0.336  Sum_probs=151.3

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCC------c-------eeeEEEeccccCeEEEEecCCCCCCEE
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNT------S-------QHLAKLSGHKGAVWEVAWAHPKFGSIL   72 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~------~-------~~~~~~~~h~~~v~~~~~~~~~~~~~l   72 (288)
                      +.-.......+++|+....|++.||.||.+++-.+...+      +       ..-+++.||..+|.-+.|+..  .+.|
T Consensus         9 i~iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~--~QKL   86 (1189)
T KOG2041|consen    9 IGIPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNEN--NQKL   86 (1189)
T ss_pred             cCCCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccc--cccc
Confidence            333556778899999988899999999999998764221      1       113668899999999999743  6789


Q ss_pred             EEeeCCCcEEEeecCCCCceEEeEEe-ecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCC
Q 036510           73 ASCSFDGTVIIWKEGNSNEWIKDHVF-EDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVG  151 (288)
Q Consensus        73 ~s~s~d~~v~iwd~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  151 (288)
                      .|...+|-|.+|-+-.+. |.. ..+ ...+..|.+++|+.++  ..++..-.||.|.+=.+.-++.|..-  +++  ..
T Consensus        87 TtSDt~GlIiVWmlykgs-W~E-EMiNnRnKSvV~SmsWn~dG--~kIcIvYeDGavIVGsvdGNRIwgKe--Lkg--~~  158 (1189)
T KOG2041|consen   87 TTSDTSGLIIVWMLYKGS-WCE-EMINNRNKSVVVSMSWNLDG--TKICIVYEDGAVIVGSVDGNRIWGKE--LKG--QL  158 (1189)
T ss_pred             cccCCCceEEEEeeeccc-HHH-HHhhCcCccEEEEEEEcCCC--cEEEEEEccCCEEEEeeccceecchh--cch--he
Confidence            999999999999876543 211 111 1244578899999884  44555566777765444332222211  111  12


Q ss_pred             eeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceee----eeee----ccccCCcceEEEEecCCC--
Q 036510          152 VTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKM----DCFP----ALQMHTDWVRDVAWAPNL--  221 (288)
Q Consensus       152 v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~~----~~~~h~~~V~~v~~sp~~--  221 (288)
                      ..-+.|+|+.              ..+.-+-+.+.+.++|.... +.+    .+.-    .+......|-.+.|...-  
T Consensus       159 l~hv~ws~D~--------------~~~Lf~~ange~hlydnqgn-F~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~  223 (1189)
T KOG2041|consen  159 LAHVLWSEDL--------------EQALFKKANGETHLYDNQGN-FERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQ  223 (1189)
T ss_pred             ccceeecccH--------------HHHHhhhcCCcEEEeccccc-HHHhhhhceEEeeeeeecCCCccccceeeccCccc
Confidence            3357799886              33444556678889887543 111    1100    111122235566665321  


Q ss_pred             --CCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCC
Q 036510          222 --GLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGN  279 (288)
Q Consensus       222 --~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d  279 (288)
                        ..+.-.||.+-..|.+.|-.-..-..    -.+.+.+-.+..++|+|+|..||+++.|
T Consensus       224 ~v~pdrP~lavcy~nGr~QiMR~eND~~----Pvv~dtgm~~vgakWnh~G~vLAvcG~~  279 (1189)
T KOG2041|consen  224 PVPPDRPRLAVCYANGRMQIMRSENDPE----PVVVDTGMKIVGAKWNHNGAVLAVCGND  279 (1189)
T ss_pred             cCCCCCCEEEEEEcCceehhhhhcCCCC----CeEEecccEeecceecCCCcEEEEccCc
Confidence              00123577788888888865332111    1222223468899999999999999754

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.94  E-value=1.7e-06  Score=85.58  Aligned_cols=241  Identities=10%  Similarity=0.059  Sum_probs=141.9

Q ss_pred             EEEEEcCC-CCEEEEeeCCCcEEEEEeCCCCceeeEEEec--------------cccCeEEEEecCCCCCC-EEEEeeCC
Q 036510           15 HDVAMDYY-GKRLATASSDYSIKIIGVGNNTSQHLAKLSG--------------HKGAVWEVAWAHPKFGS-ILASCSFD   78 (288)
Q Consensus        15 ~~~~~s~~-g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~--------------h~~~v~~~~~~~~~~~~-~l~s~s~d   78 (288)
                      ..+++++. |+++++-...+.|+++|.++.   .+..+.+              +-..-.++++.++  ++ ++++-...
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~---~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~--gn~LYVaDt~n  645 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN---FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAK--KNLLYVADTEN  645 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCC---EEEEEccCCCcCCCCCchhccccCCCcEEEEeCC--CCEEEEEeCCC
Confidence            35778764 677888778888999987532   2222221              1112367787643  44 45555567


Q ss_pred             CcEEEeecCCCCceEEeEEeec--C---------------CCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeee
Q 036510           79 GTVIIWKEGNSNEWIKDHVFED--H---------------KSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDT  141 (288)
Q Consensus        79 ~~v~iwd~~~~~~~~~~~~~~~--h---------------~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~  141 (288)
                      +.|+++|..++.    +.++.+  .               -..-..++++|++ +.++++...++.|++||...+.. ..
T Consensus       646 ~~Ir~id~~~~~----V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~-g~LyVad~~~~~I~v~d~~~g~v-~~  719 (1057)
T PLN02919        646 HALREIDFVNET----VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVN-EKVYIAMAGQHQIWEYNISDGVT-RV  719 (1057)
T ss_pred             ceEEEEecCCCE----EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCC-CeEEEEECCCCeEEEEECCCCeE-EE
Confidence            889998875532    222211  0               1123578898853 56677778888999999765321 11


Q ss_pred             EEe------eccCC------CCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeee--------
Q 036510          142 SRI------DQAHP------VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDC--------  201 (288)
Q Consensus       142 ~~~------~~~~~------~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--------  201 (288)
                      ..-      ..++.      .....|.++|++.             .++++-+.++.|++||+.++......        
T Consensus       720 ~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~-------------~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~  786 (1057)
T PLN02919        720 FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLK-------------ELYIADSESSSIRALDLKTGGSRLLAGGDPTFSD  786 (1057)
T ss_pred             EecCCccccCCCCccccccccCccEEEEeCCCC-------------EEEEEECCCCeEEEEECCCCcEEEEEecccccCc
Confidence            000      00000      1123455666541             35667777899999998765311100        


Q ss_pred             -eeccccC--------CcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeecc--------------c
Q 036510          202 -FPALQMH--------TDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDF--------------K  258 (288)
Q Consensus       202 -~~~~~~h--------~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~--------------~  258 (288)
                       ...+..+        -..-..+.++|++    ..+++-+.++.|++||.....    ...+.+.              -
T Consensus       787 ~l~~fG~~dG~g~~~~l~~P~Gvavd~dG----~LYVADs~N~rIrviD~~tg~----v~tiaG~G~~G~~dG~~~~a~l  858 (1057)
T PLN02919        787 NLFKFGDHDGVGSEVLLQHPLGVLCAKDG----QIYVADSYNHKIKKLDPATKR----VTTLAGTGKAGFKDGKALKAQL  858 (1057)
T ss_pred             ccccccCCCCchhhhhccCCceeeEeCCC----cEEEEECCCCEEEEEECCCCe----EEEEeccCCcCCCCCccccccc
Confidence             0000000        0012467888863    578888899999999986431    1111110              1


Q ss_pred             cCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          259 TPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       259 ~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      .....++++|+|+.+++-+.++.|++||.
T Consensus       859 ~~P~GIavd~dG~lyVaDt~Nn~Irvid~  887 (1057)
T PLN02919        859 SEPAGLALGENGRLFVADTNNSLIRYLDL  887 (1057)
T ss_pred             CCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            24678999999998888888999999995

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.90  E-value=6.9e-07  Score=78.78  Aligned_cols=246  Identities=16%  Similarity=0.253  Sum_probs=143.0

Q ss_pred             EEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeC-----------CCcEEEe
Q 036510           16 DVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSF-----------DGTVIIW   84 (288)
Q Consensus        16 ~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-----------d~~v~iw   84 (288)
                      -+.|||.|+||+|--..| |.+|.-  +....++.+. | ..|..+.|||.  .+||+|-|.           ...++||
T Consensus       215 yv~wSP~GTYL~t~Hk~G-I~lWGG--~~f~r~~RF~-H-p~Vq~idfSP~--EkYLVT~s~~p~~~~~~d~e~~~l~IW  287 (698)
T KOG2314|consen  215 YVRWSPKGTYLVTFHKQG-IALWGG--ESFDRIQRFY-H-PGVQFIDFSPN--EKYLVTYSPEPIIVEEDDNEGQQLIIW  287 (698)
T ss_pred             eEEecCCceEEEEEeccc-eeeecC--ccHHHHHhcc-C-CCceeeecCCc--cceEEEecCCccccCcccCCCceEEEE
Confidence            368999999999877665 678853  2333344443 4 45788999875  789998763           3788999


Q ss_pred             ecCCCCceEEeEEeec--CCCceeE-EEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCC
Q 036510           85 KEGNSNEWIKDHVFED--HKSSVNS-IDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPST  161 (288)
Q Consensus        85 d~~~~~~~~~~~~~~~--h~~~v~~-l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~  161 (288)
                      |++++.   +.+.+..  ....++. ..|+-|  .+++|.... +.|.||+...   +.++....--..+|....|+|.+
T Consensus       288 DI~tG~---lkrsF~~~~~~~~~WP~frWS~D--dKy~Arm~~-~sisIyEtps---f~lld~Kslki~gIr~FswsP~~  358 (698)
T KOG2314|consen  288 DIATGL---LKRSFPVIKSPYLKWPIFRWSHD--DKYFARMTG-NSISIYETPS---FMLLDKKSLKISGIRDFSWSPTS  358 (698)
T ss_pred             Eccccc---hhcceeccCCCccccceEEeccC--CceeEEecc-ceEEEEecCc---eeeecccccCCccccCcccCCCc
Confidence            999875   2333432  2223333 478876  577887765 5788998754   22222111123568888899886


Q ss_pred             CCCcee-----------cc------------ccc----------CCCceeEEe----------ecCCcEEEEEEeCCcee
Q 036510          162 APGALV-----------GS------------GFL----------DPVQKLCSG----------GCDNTVKVWKLYNGIWK  198 (288)
Q Consensus       162 ~~~~~~-----------~~------------~~~----------~~~~~l~s~----------~~d~~i~iwd~~~~~~~  198 (288)
                      ...++.           +.            +++          ..+.+||.-          +.=..+-|+.+++..-+
T Consensus       359 ~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIp  438 (698)
T KOG2314|consen  359 NLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIP  438 (698)
T ss_pred             ceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCC
Confidence            432211           00            000          123333321          11112333333332111


Q ss_pred             eeeeeccccCCcceEEEEecCCCCCCCcEEEEEeC---CCcEEEEEeecCCCcccceEeeccc-cCeEEEEeecCCCEEE
Q 036510          199 MDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE---DGKVIIWTVAREGDQWEGKVLHDFK-TPVYRVSWSLTGNILA  274 (288)
Q Consensus       199 ~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~---D~~i~iw~~~~~~~~~~~~~~~~~~-~~i~~~~~spdg~~l~  274 (288)
                      ..   . -.-++.|-.++|-|.+    ..++.-+.   -.++.+|.++.....  -++++.+. ...+.+.|+|.|++++
T Consensus       439 ve---~-velke~vi~FaWEP~g----dkF~vi~g~~~k~tvsfY~~e~~~~~--~~lVk~~dk~~~N~vfwsPkG~fvv  508 (698)
T KOG2314|consen  439 VE---V-VELKESVIAFAWEPHG----DKFAVISGNTVKNTVSFYAVETNIKK--PSLVKELDKKFANTVFWSPKGRFVV  508 (698)
T ss_pred             ce---e-eecchheeeeeeccCC----CeEEEEEccccccceeEEEeecCCCc--hhhhhhhcccccceEEEcCCCcEEE
Confidence            11   1 1124568888999975    44554443   347999988743221  13333333 3567899999999998


Q ss_pred             EEe---CCCcEEEeEc
Q 036510          275 VAD---GNNNVTLWEE  287 (288)
Q Consensus       275 s~~---~d~~v~~w~~  287 (288)
                      ++.   ..|.+.++|+
T Consensus       509 va~l~s~~g~l~F~D~  524 (698)
T KOG2314|consen  509 VAALVSRRGDLEFYDT  524 (698)
T ss_pred             EEEecccccceEEEec
Confidence            884   4678888884

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.89  E-value=1.3e-08  Score=81.51  Aligned_cols=153  Identities=15%  Similarity=0.228  Sum_probs=98.1

Q ss_pred             EcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEe-ccccCeEEEEecCCCCCCEEEEee-----CCCcEEEeecCCCCce
Q 036510           19 MDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLS-GHKGAVWEVAWAHPKFGSILASCS-----FDGTVIIWKEGNSNEW   92 (288)
Q Consensus        19 ~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s-----~d~~v~iwd~~~~~~~   92 (288)
                      .+-.++.++.+..|+.+.+.+.+. ......++. -|.+.. +.++-+.  ++.+.++.     +-+..++|+++..++.
T Consensus        97 ~s~~~t~V~~~~~dg~~~v~s~~~-~~~~~~~i~~~~~~~a-s~~~~~~--~~~i~s~~~g~~n~~d~~~a~~~~p~~t~  172 (319)
T KOG4714|consen   97 CTMTDNRVCIGYADGSLAVFSTDK-DLALMSRIPSIHSGSA-SRKICRH--GNSILSGGCGNWNAQDNFYANTLDPIKTL  172 (319)
T ss_pred             ccccCCceEecCCCceEEEEechH-HHhhhhhccccccccc-ccceeec--ccEEecCCcceEeeccceeeecccccccc
Confidence            444477899999999999988743 111111111 122211 1222221  34444433     2334455655443322


Q ss_pred             EEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceeccccc
Q 036510           93 IKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFL  172 (288)
Q Consensus        93 ~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~  172 (288)
                      +.. .  .-.+.|.+++-||.. ..++++|+.||.+.+||.|..  .++...+++|...+..+-|.|..+          
T Consensus       173 ~~~-~--~~~~~v~~l~~hp~q-q~~v~cgt~dg~~~l~d~rn~--~~p~S~l~ahk~~i~eV~FHpk~p----------  236 (319)
T KOG4714|consen  173 IPS-K--KALDAVTALCSHPAQ-QHLVCCGTDDGIVGLWDARNV--AMPVSLLKAHKAEIWEVHFHPKNP----------  236 (319)
T ss_pred             ccc-c--cccccchhhhCCccc-ccEEEEecCCCeEEEEEcccc--cchHHHHHHhhhhhhheeccCCCc----------
Confidence            111 1  122358999999986 567899999999999999865  345566788999999999999875          


Q ss_pred             CCCceeEEeecCCcEEEEEEeC
Q 036510          173 DPVQKLCSGGCDNTVKVWKLYN  194 (288)
Q Consensus       173 ~~~~~l~s~~~d~~i~iwd~~~  194 (288)
                         ..|.++++||.+-.||..+
T Consensus       237 ---~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  237 ---EHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ---hheeEecCCCcEEEEcCCC
Confidence               5688899999999999864

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.86  E-value=3.6e-08  Score=81.04  Aligned_cols=212  Identities=17%  Similarity=0.274  Sum_probs=126.1

Q ss_pred             ccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC--ceEEeEEeecC------------CCceeEEEeccCCCCeEEE
Q 036510           55 KGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN--EWIKDHVFEDH------------KSSVNSIDWAPHELGLCLA  120 (288)
Q Consensus        55 ~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~--~~~~~~~~~~h------------~~~v~~l~~~p~~~~~~l~  120 (288)
                      .+-|+++.|...  |.+|++|...|.|.++......  ++.....+..|            ...|+.+.|..+..-..++
T Consensus        26 ad~ItaVefd~t--g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL  103 (460)
T COG5170          26 ADKITAVEFDET--GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL  103 (460)
T ss_pred             cceeeEEEeccc--cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence            456888998754  8999999999999999754322  01011112222            2468888887553222344


Q ss_pred             EEeCCCcEEEEeecCCCC-------------------e------e--------------eEEe-eccCCCCeeEEEeCCC
Q 036510          121 CGSSDGNISVFTARADGG-------------------W------D--------------TSRI-DQAHPVGVTSVSWAPS  160 (288)
Q Consensus       121 sg~~d~~i~i~d~~~~~~-------------------~------~--------------~~~~-~~~~~~~v~~i~~~p~  160 (288)
                      ..+.|++|++|.+.+.+.                   .      .              +.++ ..+|+..+.+|+++.+
T Consensus       104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD  183 (460)
T COG5170         104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD  183 (460)
T ss_pred             EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence            456899999998864310                   0      0              0000 1245555666666555


Q ss_pred             CCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeee----ccccCCcceEEEEecCCCCCCCcEEEEEeCCCc
Q 036510          161 TAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFP----ALQMHTDWVRDVAWAPNLGLPKSTIASASEDGK  236 (288)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~  236 (288)
                      .              ..++++ .|=.|.+|++......+..+.    .+..-..-|++..|+|..   -..+--.++-|+
T Consensus       184 ~--------------et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~---cn~fmYSsSkG~  245 (460)
T COG5170         184 K--------------ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEM---CNVFMYSSSKGE  245 (460)
T ss_pred             h--------------heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhH---cceEEEecCCCc
Confidence            3              445543 466788998764322222111    111223357888999964   245666778899


Q ss_pred             EEEEEeecCCCcc-----cceEee--------ccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          237 VIIWTVAREGDQW-----EGKVLH--------DFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       237 i~iw~~~~~~~~~-----~~~~~~--------~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      |++-|++....+.     ....+.        +.-..|..++|+|+|++|++-+ --+|+|||.
T Consensus       246 Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDv  308 (460)
T COG5170         246 IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDV  308 (460)
T ss_pred             EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEec
Confidence            9999998432110     111111        1224688899999999998774 479999995

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.84  E-value=6.3e-06  Score=80.33  Aligned_cols=247  Identities=17%  Similarity=0.282  Sum_probs=146.1

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeC----------C---CCceee-----------------------------
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVG----------N---NTSQHL-----------------------------   48 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~----------~---~~~~~~-----------------------------   48 (288)
                      +.+|.+.+||||+..|+-...++++-+...+          .   +..+.+                             
T Consensus       120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~  199 (928)
T PF04762_consen  120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP  199 (928)
T ss_pred             cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence            5689999999999998888888887663211          0   000000                             


Q ss_pred             ----EEEeccccCeEEEEecCCCCCCEEEEeeC----C--CcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeE
Q 036510           49 ----AKLSGHKGAVWEVAWAHPKFGSILASCSF----D--GTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLC  118 (288)
Q Consensus        49 ----~~~~~h~~~v~~~~~~~~~~~~~l~s~s~----d--~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~  118 (288)
                          ..+. +.+.-..|+|..  ||++||..+.    +  +.+|||+.. +.   +..+-..-.+--.+++|-|.  |.+
T Consensus       200 ~~d~~~~s-~dd~~~~ISWRG--DG~yFAVss~~~~~~~~R~iRVy~Re-G~---L~stSE~v~gLe~~l~WrPs--G~l  270 (928)
T PF04762_consen  200 KVDEGKLS-WDDGRVRISWRG--DGEYFAVSSVEPETGSRRVIRVYSRE-GE---LQSTSEPVDGLEGALSWRPS--GNL  270 (928)
T ss_pred             ccccCccc-cCCCceEEEECC--CCcEEEEEEEEcCCCceeEEEEECCC-ce---EEeccccCCCccCCccCCCC--CCE
Confidence                0111 333456788964  5999998764    2  689999754 32   22222222223357899998  556


Q ss_pred             EEEEeC-C--CcEEEEeecCCCCeeeEEeec-cCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeC
Q 036510          119 LACGSS-D--GNISVFTARADGGWDTSRIDQ-AHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYN  194 (288)
Q Consensus       119 l~sg~~-d--~~i~i~d~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  194 (288)
                      +|+.-. .  -.|.+|. |++.....+.... .....|..+.|++++              ..|+.--.| .|.+|-+.+
T Consensus       271 IA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds--------------~iLAv~~~~-~vqLWt~~N  334 (928)
T PF04762_consen  271 IASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDS--------------EILAVWLED-RVQLWTRSN  334 (928)
T ss_pred             EEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCC--------------CEEEEEecC-CceEEEeeC
Confidence            665532 1  2333332 2332222222221 234568999999997              566665544 499998876


Q ss_pred             CceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC----CC-----cccce-------Eee---
Q 036510          195 GIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE----GD-----QWEGK-------VLH---  255 (288)
Q Consensus       195 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~----~~-----~~~~~-------~~~---  255 (288)
                      -.|=+|+...+... ..+..+.|+|..   +..|.....++.+..++....    ..     .....       .+.   
T Consensus       335 YHWYLKqei~~~~~-~~~~~~~Wdpe~---p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~  410 (928)
T PF04762_consen  335 YHWYLKQEIRFSSS-ESVNFVKWDPEK---PLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFR  410 (928)
T ss_pred             CEEEEEEEEEccCC-CCCCceEECCCC---CCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEeccc
Confidence            55544432222222 234559999974   456777777666655444321    00     00000       001   


Q ss_pred             -------------ccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          256 -------------DFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       256 -------------~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                                   .+..+|..++|++++..+++-..||+|.+|+
T Consensus       411 ~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~  454 (928)
T PF04762_consen  411 RAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE  454 (928)
T ss_pred             ccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence                         2346799999999999999999999999997

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.80  E-value=1.2e-05  Score=70.80  Aligned_cols=192  Identities=13%  Similarity=0.133  Sum_probs=103.6

Q ss_pred             CEE-EEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCC
Q 036510           24 KRL-ATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHK  102 (288)
Q Consensus        24 ~~l-~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~  102 (288)
                      +++ ++-..++++.+.|..  +.+.+..+......-..+.|+++  |+++..++.|+.|.++|+.+..   ...++.. .
T Consensus         6 ~l~~V~~~~~~~v~viD~~--t~~~~~~i~~~~~~h~~~~~s~D--gr~~yv~~rdg~vsviD~~~~~---~v~~i~~-G   77 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGA--TNKVVARIPTGGAPHAGLKFSPD--GRYLYVANRDGTVSVIDLATGK---VVATIKV-G   77 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETT--T-SEEEEEE-STTEEEEEE-TT---SSEEEEEETTSEEEEEETTSSS---EEEEEE--S
T ss_pred             cEEEEEecCCCEEEEEECC--CCeEEEEEcCCCCceeEEEecCC--CCEEEEEcCCCeEEEEECCccc---EEEEEec-C
Confidence            444 456678999998864  34667777654333234667754  8888888999999999998766   3334443 2


Q ss_pred             CceeEEEeccCCCCeEEE-EEeCCCcEEEEeecCCCCeeeEEeec----cCCCCeeEEEeCCCCCCCceecccccCCCce
Q 036510          103 SSVNSIDWAPHELGLCLA-CGSSDGNISVFTARADGGWDTSRIDQ----AHPVGVTSVSWAPSTAPGALVGSGFLDPVQK  177 (288)
Q Consensus       103 ~~v~~l~~~p~~~~~~l~-sg~~d~~i~i~d~~~~~~~~~~~~~~----~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~  177 (288)
                      ....+++++|+  +++++ +.-..+.+.++|.++...........    .....+..|..+|..+             .+
T Consensus        78 ~~~~~i~~s~D--G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~-------------~f  142 (369)
T PF02239_consen   78 GNPRGIAVSPD--GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRP-------------EF  142 (369)
T ss_dssp             SEEEEEEE--T--TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSS-------------EE
T ss_pred             CCcceEEEcCC--CCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCC-------------EE
Confidence            34678999998  45444 55678999999987643222111100    1223466676666552             23


Q ss_pred             eEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510          178 LCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR  244 (288)
Q Consensus       178 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~  244 (288)
                      +++--.-+.|-+.|..... .+ ....+. ....-....|.|++.   .++++....+.|-++|...
T Consensus       143 Vv~lkd~~~I~vVdy~d~~-~~-~~~~i~-~g~~~~D~~~dpdgr---y~~va~~~sn~i~viD~~~  203 (369)
T PF02239_consen  143 VVNLKDTGEIWVVDYSDPK-NL-KVTTIK-VGRFPHDGGFDPDGR---YFLVAANGSNKIAVIDTKT  203 (369)
T ss_dssp             EEEETTTTEEEEEETTTSS-CE-EEEEEE---TTEEEEEE-TTSS---EEEEEEGGGTEEEEEETTT
T ss_pred             EEEEccCCeEEEEEecccc-cc-ceeeec-ccccccccccCcccc---eeeecccccceeEEEeecc
Confidence            3343333555555543321 11 111111 122346778888752   2345455566777777654

...

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.78  E-value=1.7e-07  Score=79.33  Aligned_cols=155  Identities=15%  Similarity=0.134  Sum_probs=99.3

Q ss_pred             EEcCCCCEEEEeeCCCcEEEEEeCCCC--ceeeEEEeccccCeEEEEecCC-CCCCEEEEeeCCCcEEEeecCCCCceEE
Q 036510           18 AMDYYGKRLATASSDYSIKIIGVGNNT--SQHLAKLSGHKGAVWEVAWAHP-KFGSILASCSFDGTVIIWKEGNSNEWIK   94 (288)
Q Consensus        18 ~~s~~g~~l~s~~~d~~i~lwd~~~~~--~~~~~~~~~h~~~v~~~~~~~~-~~~~~l~s~s~d~~v~iwd~~~~~~~~~   94 (288)
                      ..++++++||.+-.++...++++....  .+++....... .-.++.|... ....+....++...+.+|....+.    
T Consensus        69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~-~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~----  143 (390)
T KOG3914|consen   69 LTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK-RPTAISFIREDTSVLVADKAGDVYSFDILSADSGR----  143 (390)
T ss_pred             ccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc-CcceeeeeeccceEEEEeecCCceeeeeecccccC----
Confidence            456778888888888876677664322  23332222211 1233333322 123333455666677777654322    


Q ss_pred             eEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCC
Q 036510           95 DHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDP  174 (288)
Q Consensus        95 ~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~  174 (288)
                      ...+-+|..-+..++|+||  ...++++..|.+|++-...  .....-...-+|+..|..++.-++              
T Consensus       144 ~~~~lGhvSml~dVavS~D--~~~IitaDRDEkIRvs~yp--a~f~IesfclGH~eFVS~isl~~~--------------  205 (390)
T KOG3914|consen  144 CEPILGHVSMLLDVAVSPD--DQFIITADRDEKIRVSRYP--ATFVIESFCLGHKEFVSTISLTDN--------------  205 (390)
T ss_pred             cchhhhhhhhhheeeecCC--CCEEEEecCCceEEEEecC--cccchhhhccccHhheeeeeeccC--------------
Confidence            2234579999999999998  5779999999999985433  222222334578888888876665              


Q ss_pred             CceeEEeecCCcEEEEEEeCCc
Q 036510          175 VQKLCSGGCDNTVKVWKLYNGI  196 (288)
Q Consensus       175 ~~~l~s~~~d~~i~iwd~~~~~  196 (288)
                       +.|+|||.|+++++||++++.
T Consensus       206 -~~LlS~sGD~tlr~Wd~~sgk  226 (390)
T KOG3914|consen  206 -YLLLSGSGDKTLRLWDITSGK  226 (390)
T ss_pred             -ceeeecCCCCcEEEEecccCC
Confidence             458999999999999999873

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.77  E-value=9.6e-06  Score=71.06  Aligned_cols=196  Identities=16%  Similarity=0.187  Sum_probs=110.9

Q ss_pred             eEEEEecCCCCCCEEEE-----eeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeC--------
Q 036510           58 VWEVAWAHPKFGSILAS-----CSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSS--------  124 (288)
Q Consensus        58 v~~~~~~~~~~~~~l~s-----~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~--------  124 (288)
                      +....|+|-+++..|+.     ...+++++||.+... ..+..+.+.  .-.-..+.|++.+.-.++.+-..        
T Consensus       176 i~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~-s~l~tk~lf--k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyf  252 (561)
T COG5354         176 ILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN-SVLVTKNLF--KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYF  252 (561)
T ss_pred             eeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC-CeeeeeeeE--eecccEEEEecCCceEEEEEEEeeeccccee
Confidence            44455554333344442     355667777766432 222222322  11224567777643222222111        


Q ss_pred             -CCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeee
Q 036510          125 -DGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFP  203 (288)
Q Consensus       125 -d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  203 (288)
                       ..+++|++++... +   .+.....++|..+.|.|.+..            --+++|=-+..+.++|++.+.     ..
T Consensus       253 gesnLyl~~~~e~~-i---~V~~~~~~pVhdf~W~p~S~~------------F~vi~g~~pa~~s~~~lr~Nl-----~~  311 (561)
T COG5354         253 GESNLYLLRITERS-I---PVEKDLKDPVHDFTWEPLSSR------------FAVISGYMPASVSVFDLRGNL-----RF  311 (561)
T ss_pred             ccceEEEEeecccc-c---ceeccccccceeeeecccCCc------------eeEEecccccceeecccccce-----EE
Confidence             2456777776332 1   122245678999999998731            114455567788889987752     11


Q ss_pred             ccccCCcceEEEEecCCCCCCCcEEEEEeCCC---cEEEEEeecCCCcccceEeeccc-cCeEEEEeecCCCEEEEEe--
Q 036510          204 ALQMHTDWVRDVAWAPNLGLPKSTIASASEDG---KVIIWTVAREGDQWEGKVLHDFK-TPVYRVSWSLTGNILAVAD--  277 (288)
Q Consensus       204 ~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~---~i~iw~~~~~~~~~~~~~~~~~~-~~i~~~~~spdg~~l~s~~--  277 (288)
                      .+  ....=+.+.|+|..    .+++.++.|+   .|-+|+...+.     ..+..+. ....-+.|+|||+++.+.-  
T Consensus       312 ~~--Pe~~rNT~~fsp~~----r~il~agF~nl~gni~i~~~~~rf-----~~~~~~~~~n~s~~~wspd~qF~~~~~ts  380 (561)
T COG5354         312 YF--PEQKRNTIFFSPHE----RYILFAGFDNLQGNIEIFDPAGRF-----KVAGAFNGLNTSYCDWSPDGQFYDTDTTS  380 (561)
T ss_pred             ec--CCcccccccccCcc----cEEEEecCCccccceEEeccCCce-----EEEEEeecCCceEeeccCCceEEEecCCC
Confidence            11  11222567899974    6788888765   69999876431     2221222 2345689999999988873  


Q ss_pred             ----CCCcEEEeEcC
Q 036510          278 ----GNNNVTLWEEA  288 (288)
Q Consensus       278 ----~d~~v~~w~~~  288 (288)
                          .|+.|+||++.
T Consensus       381 ~k~~~Dn~i~l~~v~  395 (561)
T COG5354         381 EKLRVDNSIKLWDVY  395 (561)
T ss_pred             cccccCcceEEEEec
Confidence                38899999963

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.77  E-value=3.4e-06  Score=74.49  Aligned_cols=233  Identities=15%  Similarity=0.222  Sum_probs=135.4

Q ss_pred             EEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEE-----EeeCCCcEEEeecCCC
Q 036510           15 HDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILA-----SCSFDGTVIIWKEGNS   89 (288)
Q Consensus        15 ~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-----s~s~d~~v~iwd~~~~   89 (288)
                      .+.+|++|..+. +==..+.+.+|+..+.. .....|  |...|..+.+|+.+....++     +.++=+.|+||...-.
T Consensus       129 W~~qfs~dEsl~-arlv~nev~f~~~~~f~-~~~~kl--~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~  204 (566)
T KOG2315|consen  129 WVPQFSIDESLA-ARLVSNEVQFYDLGSFK-TIQHKL--SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE  204 (566)
T ss_pred             cccccccchhhh-hhhhcceEEEEecCCcc-ceeeee--eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccc
Confidence            356788776432 22223678899875422 112222  56778888888642233343     3577788999976421


Q ss_pred             C--ceEEeEEeecCCCceeEEEeccCCCCeE-EEEEeCCC---------cEEEEeecCCCCeeeEEeeccCCCCeeEEEe
Q 036510           90 N--EWIKDHVFEDHKSSVNSIDWAPHELGLC-LACGSSDG---------NISVFTARADGGWDTSRIDQAHPVGVTSVSW  157 (288)
Q Consensus        90 ~--~~~~~~~~~~h~~~v~~l~~~p~~~~~~-l~sg~~d~---------~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~  157 (288)
                      .  .....+++  ....=-.+.|++-+.+.+ |++..-|+         ++.++++. +.. .  .+.-.-.++|.++.|
T Consensus       205 ~~~~~~a~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s-~--~V~L~k~GPVhdv~W  278 (566)
T KOG2315|consen  205 GQHQPVANKSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GES-V--SVPLLKEGPVHDVTW  278 (566)
T ss_pred             cccchhhhccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-Cce-E--EEecCCCCCceEEEE
Confidence            1  11111222  111223467887665544 33333343         56666654 111 1  111123568999999


Q ss_pred             CCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCC---
Q 036510          158 APSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASED---  234 (288)
Q Consensus       158 ~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D---  234 (288)
                      +|.+.+ +.           +|-|=--.++.|+|++..     .+..+  ..++=+++-|+|.+    ++|+-++.+   
T Consensus       279 ~~s~~E-F~-----------VvyGfMPAkvtifnlr~~-----~v~df--~egpRN~~~fnp~g----~ii~lAGFGNL~  335 (566)
T KOG2315|consen  279 SPSGRE-FA-----------VVYGFMPAKVTIFNLRGK-----PVFDF--PEGPRNTAFFNPHG----NIILLAGFGNLP  335 (566)
T ss_pred             CCCCCE-EE-----------EEEecccceEEEEcCCCC-----EeEeC--CCCCccceEECCCC----CEEEEeecCCCC
Confidence            998842 11           223333456888888653     33333  33345889999974    678877765   


Q ss_pred             CcEEEEEeecCCCcccceEeeccc-cCeEEEEeecCCCEEEEEeC------CCcEEEeE
Q 036510          235 GKVIIWTVAREGDQWEGKVLHDFK-TPVYRVSWSLTGNILAVADG------NNNVTLWE  286 (288)
Q Consensus       235 ~~i~iw~~~~~~~~~~~~~~~~~~-~~i~~~~~spdg~~l~s~~~------d~~v~~w~  286 (288)
                      |.+-|||+...+      .+..+. ..-+-+.|+|||++|+++.-      |+.++||.
T Consensus       336 G~mEvwDv~n~K------~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh  388 (566)
T KOG2315|consen  336 GDMEVWDVPNRK------LIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH  388 (566)
T ss_pred             CceEEEeccchh------hccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence            479999987532      223332 23456899999999999963      89999997

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.75  E-value=3.7e-07  Score=77.38  Aligned_cols=159  Identities=13%  Similarity=0.115  Sum_probs=100.7

Q ss_pred             eEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCc-eEEeEEeecCCCceeEEEeccCCCCeEEEEE-eCCCcEEEEeecC
Q 036510           58 VWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNE-WIKDHVFEDHKSSVNSIDWAPHELGLCLACG-SSDGNISVFTARA  135 (288)
Q Consensus        58 v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg-~~d~~i~i~d~~~  135 (288)
                      .+.+.+++  ++++|+.+-.++...+++.+...+ ..+...... ...-+++.+..+.....++-. +....+.+|....
T Consensus        65 ~~~~~~s~--~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~  141 (390)
T KOG3914|consen   65 PALVLTSD--SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADS  141 (390)
T ss_pred             ccccccCC--CceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccc
Confidence            34455543  478888888888877888765432 222222211 223344444444322222222 3334455554433


Q ss_pred             CCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeec-cccCCcceEE
Q 036510          136 DGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPA-LQMHTDWVRD  214 (288)
Q Consensus       136 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~h~~~V~~  214 (288)
                      +    ......+|-.-+..+.|+|+.              ++++++..|..|++-.... .   ..+.. .-||+..|..
T Consensus       142 ~----~~~~~lGhvSml~dVavS~D~--------------~~IitaDRDEkIRvs~ypa-~---f~IesfclGH~eFVS~  199 (390)
T KOG3914|consen  142 G----RCEPILGHVSMLLDVAVSPDD--------------QFIITADRDEKIRVSRYPA-T---FVIESFCLGHKEFVST  199 (390)
T ss_pred             c----CcchhhhhhhhhheeeecCCC--------------CEEEEecCCceEEEEecCc-c---cchhhhccccHhheee
Confidence            1    123445787789999999997              7899999999999865432 1   12223 3689999999


Q ss_pred             EEecCCCCCCCcEEEEEeCCCcEEEEEeecCC
Q 036510          215 VAWAPNLGLPKSTIASASEDGKVIIWTVAREG  246 (288)
Q Consensus       215 v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~  246 (288)
                      ++.-++     +.|+|||.|+++++||+.+..
T Consensus       200 isl~~~-----~~LlS~sGD~tlr~Wd~~sgk  226 (390)
T KOG3914|consen  200 ISLTDN-----YLLLSGSGDKTLRLWDITSGK  226 (390)
T ss_pred             eeeccC-----ceeeecCCCCcEEEEecccCC
Confidence            998875     568999999999999998754

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.74  E-value=2.5e-08  Score=87.71  Aligned_cols=174  Identities=17%  Similarity=0.224  Sum_probs=113.9

Q ss_pred             eEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC----ceEEeEEeecCCCceeEEEeccCCCCeEEEEEe
Q 036510           48 LAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN----EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGS  123 (288)
Q Consensus        48 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~----~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~  123 (288)
                      +..+.||+..|..++--.  +.+-|+++|.|++|++|.++...    +..+..++..|+.+|..+.|-.+  .+.++++ 
T Consensus       728 L~nf~GH~~~iRai~Aid--NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~--lr~i~Sc-  802 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAID--NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD--LRSIASC-  802 (1034)
T ss_pred             eecccCcHHHhHHHHhcc--cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec--cceeeec-
Confidence            567789999988877532  46789999999999999986532    22355677889999999999876  4556655 


Q ss_pred             CCCcEEEEeecCCCCeeeEE--eeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeee
Q 036510          124 SDGNISVFTARADGGWDTSR--IDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDC  201 (288)
Q Consensus       124 ~d~~i~i~d~~~~~~~~~~~--~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  201 (288)
                       |+-|.+||.=.+..+....  ..++....|.++   |+-           +..-+++-++...+||++|.+...|.-+.
T Consensus       803 -D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl---~nv-----------~~~iliAgcsaeSTVKl~DaRsce~~~E~  867 (1034)
T KOG4190|consen  803 -DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCL---ENV-----------DRHILIAGCSAESTVKLFDARSCEWTCEL  867 (1034)
T ss_pred             -cCcceeecccccchhHhhhcCcccCCCceeEec---ccC-----------cchheeeeccchhhheeeecccccceeeE
Confidence             8899999964332111110  011111223333   221           00122334478899999999887654322


Q ss_pred             -eeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510          202 -FPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE  245 (288)
Q Consensus       202 -~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~  245 (288)
                       +..-.+...-++++...|.    ++.+++|-..|.|.+-|.+..
T Consensus       868 kVcna~~Pna~~R~iaVa~~----GN~lAa~LSnGci~~LDaR~G  908 (1034)
T KOG4190|consen  868 KVCNAPGPNALTRAIAVADK----GNKLAAALSNGCIAILDARNG  908 (1034)
T ss_pred             EeccCCCCchheeEEEeccC----cchhhHHhcCCcEEEEecCCC
Confidence             1112344456888888886    478999999999999997753

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.73  E-value=5.6e-08  Score=56.07  Aligned_cols=38  Identities=34%  Similarity=0.728  Sum_probs=35.2

Q ss_pred             eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510           46 QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      +++.++.+|...|++++|+++  +.+|++++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~--~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPD--GNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETT--SSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecc--cccceeeCCCCEEEEEC
Confidence            568899999999999999875  89999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.72  E-value=4.8e-08  Score=56.38  Aligned_cols=38  Identities=29%  Similarity=0.774  Sum_probs=34.1

Q ss_pred             eeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEE
Q 036510          200 DCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT  241 (288)
Q Consensus       200 ~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~  241 (288)
                      +++..+.+|.+.|++++|+|+    +.+|++++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~----~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPD----GNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETT----SSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecc----cccceeeCCCCEEEEEC
Confidence            356678999999999999998    47899999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.72  E-value=8.7e-05  Score=60.86  Aligned_cols=235  Identities=18%  Similarity=0.263  Sum_probs=118.5

Q ss_pred             EEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEe---ccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCce
Q 036510           16 DVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLS---GHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEW   92 (288)
Q Consensus        16 ~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~   92 (288)
                      .++.+.+|+.||. =.|..|.|=....+=...+....   .....=.-++||++  +.+||.+...|+|+++|+.....+
T Consensus         2 ~~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD--~tlLa~a~S~G~i~vfdl~g~~lf   78 (282)
T PF15492_consen    2 HLALSSDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPD--CTLLAYAESTGTIRVFDLMGSELF   78 (282)
T ss_pred             ceeecCCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCC--CcEEEEEcCCCeEEEEecccceeE
Confidence            3567788977664 45656665433211011111111   22223466999975  899999999999999998643211


Q ss_pred             E--EeEEee-cCCCceeEEEeccCCC----CeEEEEEeCCCcEEEEeecC--CCCee---eEEeeccCCCCeeEEEeCCC
Q 036510           93 I--KDHVFE-DHKSSVNSIDWAPHEL----GLCLACGSSDGNISVFTARA--DGGWD---TSRIDQAHPVGVTSVSWAPS  160 (288)
Q Consensus        93 ~--~~~~~~-~h~~~v~~l~~~p~~~----~~~l~sg~~d~~i~i~d~~~--~~~~~---~~~~~~~~~~~v~~i~~~p~  160 (288)
                      .  ...... .-...|..+.|-+-..    ...|+.-..+|.++-|-+..  .+...   .+.....++.+|.++.+.|.
T Consensus        79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~  158 (282)
T PF15492_consen   79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK  158 (282)
T ss_pred             EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence            0  000011 1234566666643210    12355556778887776532  22222   22333445778999999887


Q ss_pred             CCCCceecccccCCCceeEEeecCCc-EEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCc---
Q 036510          161 TAPGALVGSGFLDPVQKLCSGGCDNT-VKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGK---  236 (288)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~---  236 (288)
                      .              ++|+.||.... -..+....  ..+..-+.+.+-..+               ..++...|+.   
T Consensus       159 h--------------~LLlVgG~~~~~~~~s~a~~--~GLtaWRiL~~~Pyy---------------k~v~~~~~~~~~~  207 (282)
T PF15492_consen  159 H--------------RLLLVGGCEQNQDGMSKASS--CGLTAWRILSDSPYY---------------KQVTSSEDDITAS  207 (282)
T ss_pred             C--------------CEEEEeccCCCCCccccccc--cCceEEEEcCCCCcE---------------EEccccCcccccc
Confidence            6              55555544322 00000000  000111111111111               1222222221   


Q ss_pred             ---EEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          237 ---VIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       237 ---i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                         -.+|.+-..   ............|..+..||||+.||+...+|+|.||++
T Consensus       208 ~~~~~~~~~~~~---~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~i  258 (282)
T PF15492_consen  208 SKRRGLLRIPSF---KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEI  258 (282)
T ss_pred             ccccceeeccce---eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEec
Confidence               112221100   000001123467999999999999999999999999985

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.66  E-value=5.1e-06  Score=67.29  Aligned_cols=151  Identities=15%  Similarity=0.066  Sum_probs=106.2

Q ss_pred             EEEeeCCCcEEEEEeCCCCceeeEEEecccc--CeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCC
Q 036510           26 LATASSDYSIKIIGVGNNTSQHLAKLSGHKG--AVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKS  103 (288)
Q Consensus        26 l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~  103 (288)
                      +.-++.|.++++.+++....  ...  -|..  .+..+.++++  +..+++.+....|-.|.+.+..++........-.+
T Consensus       131 ~~i~sndht~k~~~~~~~s~--~~~--~h~~~~~~ns~~~snd--~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D  204 (344)
T KOG4532|consen  131 LNIASNDHTGKTMVVSGDSN--KFA--VHNQNLTQNSLHYSND--PSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSD  204 (344)
T ss_pred             eeeccCCcceeEEEEecCcc--cce--eeccccceeeeEEcCC--CceEEEecCCCcceEEEeCCccceeeeeEecccCC
Confidence            55688899999988864321  111  1333  3788888865  88999999999999999877666544433444455


Q ss_pred             ceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeE--EeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEe
Q 036510          104 SVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTS--RIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSG  181 (288)
Q Consensus       104 ~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~--~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~  181 (288)
                      .-.+.+|+..  ..++|++.+||++.|||+|.....+..  .....|++.+..+.|+|-+..            .+|.-.
T Consensus       205 ~gF~~S~s~~--~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~l------------DLLf~s  270 (344)
T KOG4532|consen  205 HGFYNSFSEN--DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLL------------DLLFIS  270 (344)
T ss_pred             CceeeeeccC--cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcc------------eEEEEe
Confidence            6678888865  567999999999999999986543322  122358889999999985532            344444


Q ss_pred             ecCCcEEEEEEeCCc
Q 036510          182 GCDNTVKVWKLYNGI  196 (288)
Q Consensus       182 ~~d~~i~iwd~~~~~  196 (288)
                      ..-+.+.+-|+++..
T Consensus       271 Ehfs~~hv~D~R~~~  285 (344)
T KOG4532|consen  271 EHFSRVHVVDTRNYV  285 (344)
T ss_pred             cCcceEEEEEcccCc
Confidence            445678899998864

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.65  E-value=3.8e-06  Score=74.19  Aligned_cols=241  Identities=16%  Similarity=0.223  Sum_probs=142.9

Q ss_pred             ceEEEEEcCCCCEEEE-----eeCC-----CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEE
Q 036510           13 TVHDVAMDYYGKRLAT-----ASSD-----YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVI   82 (288)
Q Consensus        13 ~v~~~~~s~~g~~l~s-----~~~d-----~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~   82 (288)
                      .++.+.|+|.|++|.+     --.+     ..+++|++..  +.....+......-|.+.|+.+   +.|+.==..+.+.
T Consensus        75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet--~~~~s~~q~k~Q~~W~~qfs~d---Esl~arlv~nev~  149 (566)
T KOG2315|consen   75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVET--GVQRSQIQKKMQNGWVPQFSID---ESLAARLVSNEVQ  149 (566)
T ss_pred             eeeeeeecccccccccccccccccCCCCCCCceeeeeecc--ceehhheehhhhcCcccccccc---hhhhhhhhcceEE
Confidence            6678889999988854     1122     3466888754  3334344443444488999864   2333333347899


Q ss_pred             EeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEE-----EEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEe
Q 036510           83 IWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLA-----CGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSW  157 (288)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~-----sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~  157 (288)
                      +|+..+....  .  -+.|...|+.+.++|.+....+|     .+|.=..++||........+......-....-..+.|
T Consensus       150 f~~~~~f~~~--~--~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~W  225 (566)
T KOG2315|consen  150 FYDLGSFKTI--Q--HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKW  225 (566)
T ss_pred             EEecCCccce--e--eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEe
Confidence            9998764321  1  23467889999999974333333     2344457888876533222221111112223445778


Q ss_pred             CCCCCCCceecccccCCCceeEEeecCC---------cEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEE
Q 036510          158 APSTAPGALVGSGFLDPVQKLCSGGCDN---------TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTI  228 (288)
Q Consensus       158 ~p~~~~~~~~~~~~~~~~~~l~s~~~d~---------~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l  228 (288)
                      ++-+....           +|++.--|+         ++.+.++...    .+.-.+ ...++|.+|.|+|++..  =-+
T Consensus       226 N~~gt~LL-----------vLastdVDktn~SYYGEq~Lyll~t~g~----s~~V~L-~k~GPVhdv~W~~s~~E--F~V  287 (566)
T KOG2315|consen  226 NKLGTALL-----------VLASTDVDKTNASYYGEQTLYLLATQGE----SVSVPL-LKEGPVHDVTWSPSGRE--FAV  287 (566)
T ss_pred             ccCCceEE-----------EEEEEeecCCCccccccceEEEEEecCc----eEEEec-CCCCCceEEEECCCCCE--EEE
Confidence            87663111           122333333         5677666521    222222 23568999999998521  113


Q ss_pred             EEEeCCCcEEEEEeecCCCcccceEeecc-ccCeEEEEeecCCCEEEEEeCC---CcEEEeEc
Q 036510          229 ASASEDGKVIIWTVAREGDQWEGKVLHDF-KTPVYRVSWSLTGNILAVADGN---NNVTLWEE  287 (288)
Q Consensus       229 ~s~s~D~~i~iw~~~~~~~~~~~~~~~~~-~~~i~~~~~spdg~~l~s~~~d---~~v~~w~~  287 (288)
                      +-|=.-..+.|+|++       +.+++.+ .++=+.+-|||.|++|+.++-+   |.+-|||+
T Consensus       288 vyGfMPAkvtifnlr-------~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv  343 (566)
T KOG2315|consen  288 VYGFMPAKVTIFNLR-------GKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDV  343 (566)
T ss_pred             EEecccceEEEEcCC-------CCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEec
Confidence            334457789999876       2455555 3577889999999999999864   78999996

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.62  E-value=0.00028  Score=61.27  Aligned_cols=237  Identities=11%  Similarity=0.092  Sum_probs=118.7

Q ss_pred             EcCCCCEEEEeeC----------CCcEEEEEeCCCCceeeEEEecccc-------CeEEEEecCCCCCCEEEEee-C-CC
Q 036510           19 MDYYGKRLATASS----------DYSIKIIGVGNNTSQHLAKLSGHKG-------AVWEVAWAHPKFGSILASCS-F-DG   79 (288)
Q Consensus        19 ~s~~g~~l~s~~~----------d~~i~lwd~~~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~~~l~s~s-~-d~   79 (288)
                      ++|||+.|+.+..          +..|.+||...  .+.+..+.--..       .-..++++++  |++|...- . +.
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t--~~~~~~i~~p~~p~~~~~~~~~~~~ls~d--gk~l~V~n~~p~~  128 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT--HLPIADIELPEGPRFLVGTYPWMTSLTPD--NKTLLFYQFSPSP  128 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECcc--CcEEeEEccCCCchhhccCccceEEECCC--CCEEEEecCCCCC
Confidence            8999988776665          78999999853  344544432111       1235677654  77666444 3 78


Q ss_pred             cEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCC--CCee-EEE
Q 036510           80 TVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHP--VGVT-SVS  156 (288)
Q Consensus        80 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~--~~v~-~i~  156 (288)
                      .|.+.|+.+.+   ....+.-. +...-...++.  ...  .-+.||......+...+........-.+.  ..+. .-.
T Consensus       129 ~V~VvD~~~~k---vv~ei~vp-~~~~vy~t~e~--~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~  200 (352)
T TIGR02658       129 AVGVVDLEGKA---FVRMMDVP-DCYHIFPTAND--TFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPA  200 (352)
T ss_pred             EEEEEECCCCc---EEEEEeCC-CCcEEEEecCC--ccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCc
Confidence            99999987654   22223211 11111111111  221  12345555444443322211000000000  0000 001


Q ss_pred             eCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceee-eeeeccc-------cCCcceEEEEecCCCCCCCcEE
Q 036510          157 WAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKM-DCFPALQ-------MHTDWVRDVAWAPNLGLPKSTI  228 (288)
Q Consensus       157 ~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~-------~h~~~V~~v~~sp~~~~~~~~l  228 (288)
                      |.+.             +++.+....+ |+|.+.|+....... +....+.       -......-++++|++   ...+
T Consensus       201 ~~~~-------------dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg---~~ly  263 (352)
T TIGR02658       201 YSNK-------------SGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRAR---DRIY  263 (352)
T ss_pred             eEcC-------------CCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCC---CEEE
Confidence            1120             1244444333 999999964431111 1111110       122233448999986   3445


Q ss_pred             EEEe-CC--------CcEEEEEeecCCCcccceEeeccccCeEEEEeecCCC-EEEEEe-CCCcEEEeEcC
Q 036510          229 ASAS-ED--------GKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGN-ILAVAD-GNNNVTLWEEA  288 (288)
Q Consensus       229 ~s~s-~D--------~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~-~l~s~~-~d~~v~~w~~~  288 (288)
                      +... ..        +.|.++|....+.   ...+ ..+..+..++++|||+ +|++.. .++.|.+.|.+
T Consensus       264 V~~~~~~~~thk~~~~~V~ViD~~t~kv---i~~i-~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~  330 (352)
T TIGR02658       264 LLADQRAKWTHKTASRFLFVVDAKTGKR---LRKI-ELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAE  330 (352)
T ss_pred             EEecCCccccccCCCCEEEEEECCCCeE---EEEE-eCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECc
Confidence            5332 12        5788888765321   1111 2346789999999999 887776 57889999853

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=4.7e-06  Score=70.98  Aligned_cols=85  Identities=18%  Similarity=0.331  Sum_probs=71.2

Q ss_pred             CCCccccccccceEEEEEcCCCC-EEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCc
Q 036510            2 PPQKIETGHEDTVHDVAMDYYGK-RLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGT   80 (288)
Q Consensus         2 ~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~   80 (288)
                      .+..++.+|...|.+++|||..+ +|..++.+.+|+|.|+..  ...+.++..| ..+|+++|..+ +.+++..|-..|.
T Consensus       184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet--~~~vssy~a~-~~~wSC~wDld-e~h~IYaGl~nG~  259 (463)
T KOG1645|consen  184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET--SCVVSSYIAY-NQIWSCCWDLD-ERHVIYAGLQNGM  259 (463)
T ss_pred             chhhcccccchhhhhhccCccccceeeeeccCceEEEEeccc--ceeeeheecc-CCceeeeeccC-CcceeEEeccCce
Confidence            34457788999999999999876 789999999999999853  3556777777 78999999876 4788999999999


Q ss_pred             EEEeecCCCC
Q 036510           81 VIIWKEGNSN   90 (288)
Q Consensus        81 v~iwd~~~~~   90 (288)
                      |.|+|++...
T Consensus       260 VlvyD~R~~~  269 (463)
T KOG1645|consen  260 VLVYDMRQPE  269 (463)
T ss_pred             EEEEEccCCC
Confidence            9999998754

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.60  E-value=0.00025  Score=59.91  Aligned_cols=233  Identities=15%  Similarity=0.132  Sum_probs=133.0

Q ss_pred             CCcEEEEEeCCCCcee-eEEEeccccCeEEEEecCCCCCCEEEEeeC---CCcEEEeecCCC-CceEEeEEeecCCCcee
Q 036510           32 DYSIKIIGVGNNTSQH-LAKLSGHKGAVWEVAWAHPKFGSILASCSF---DGTVIIWKEGNS-NEWIKDHVFEDHKSSVN  106 (288)
Q Consensus        32 d~~i~lwd~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---d~~v~iwd~~~~-~~~~~~~~~~~h~~~v~  106 (288)
                      +.-|.+|+++..+++. ...+-.+.+..+-++|+++  .+.|.++-.   +|.|..+.+... +.............+-.
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~--~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~   92 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPD--QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC   92 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCC--CCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence            4668999887444332 2233456777888999864  556665533   677887776532 21111111111122336


Q ss_pred             EEEeccCCCCeEEEEE-eCCCcEEEEeecCCCCeeeEEeeccCCCC----------eeEEEeCCCCCCCceecccccCCC
Q 036510          107 SIDWAPHELGLCLACG-SSDGNISVFTARADGGWDTSRIDQAHPVG----------VTSVSWAPSTAPGALVGSGFLDPV  175 (288)
Q Consensus       107 ~l~~~p~~~~~~l~sg-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~----------v~~i~~~p~~~~~~~~~~~~~~~~  175 (288)
                      -++++++  +++++++ -..|.|.++-++..+..........|...          +....+.|++              
T Consensus        93 yvsvd~~--g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~--------------  156 (346)
T COG2706          93 YVSVDED--GRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG--------------  156 (346)
T ss_pred             EEEECCC--CCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC--------------
Confidence            6777777  5555555 45579999999776544333222233333          6677788876              


Q ss_pred             ceeEEe-ecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCC-cccceE
Q 036510          176 QKLCSG-GCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGD-QWEGKV  253 (288)
Q Consensus       176 ~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~-~~~~~~  253 (288)
                      ++|++. -.-..|.+|++..+.-.......+....++ +-+.|+|+.+.  -|+ ..--+++|-+|....... ..+...
T Consensus       157 ~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GP-RHi~FHpn~k~--aY~-v~EL~stV~v~~y~~~~g~~~~lQ~  232 (346)
T COG2706         157 RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGP-RHIVFHPNGKY--AYL-VNELNSTVDVLEYNPAVGKFEELQT  232 (346)
T ss_pred             CEEEEeecCCceEEEEEcccCccccccccccCCCCCc-ceEEEcCCCcE--EEE-EeccCCEEEEEEEcCCCceEEEeee
Confidence            555544 223358899998763221112222322333 78999998632  122 233489999999876422 112222


Q ss_pred             ee----cc--ccCeEEEEeecCCCEEEEEeC-CCcEEEeE
Q 036510          254 LH----DF--KTPVYRVSWSLTGNILAVADG-NNNVTLWE  286 (288)
Q Consensus       254 ~~----~~--~~~i~~~~~spdg~~l~s~~~-d~~v~~w~  286 (288)
                      +.    ++  ..+.-.+..+|||++|.++.. .+.|-++.
T Consensus       233 i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~  272 (346)
T COG2706         233 IDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFS  272 (346)
T ss_pred             eccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence            21    22  246778999999999988742 23555554

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.59  E-value=0.00012  Score=63.98  Aligned_cols=124  Identities=16%  Similarity=0.179  Sum_probs=85.1

Q ss_pred             CCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCC-cEEEeecCCCCceEEeEEeec
Q 036510           22 YGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDG-TVIIWKEGNSNEWIKDHVFED  100 (288)
Q Consensus        22 ~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~-~v~iwd~~~~~~~~~~~~~~~  100 (288)
                      +|.+++..|.. ...|.+...+  ..+  .-+|.+.|....+..+  ++-++.|..|| .+-|+|.+.+.    ++.+..
T Consensus       331 ~Gd~ia~VSRG-kaFi~~~~~~--~~i--qv~~~~~VrY~r~~~~--~e~~vigt~dgD~l~iyd~~~~e----~kr~e~  399 (668)
T COG4946         331 NGDYIALVSRG-KAFIMRPWDG--YSI--QVGKKGGVRYRRIQVD--PEGDVIGTNDGDKLGIYDKDGGE----VKRIEK  399 (668)
T ss_pred             CCcEEEEEecC-cEEEECCCCC--eeE--EcCCCCceEEEEEccC--CcceEEeccCCceEEEEecCCce----EEEeeC
Confidence            57887777754 4455543221  111  2367888887777643  56888999999 89999987653    344555


Q ss_pred             CCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCC
Q 036510          101 HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPST  161 (288)
Q Consensus       101 h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~  161 (288)
                      .-+.|.++..+|+  ++.++.+..-..|.++|+.++..   ....+....-|+.+.|+|+.
T Consensus       400 ~lg~I~av~vs~d--GK~~vvaNdr~el~vididngnv---~~idkS~~~lItdf~~~~ns  455 (668)
T COG4946         400 DLGNIEAVKVSPD--GKKVVVANDRFELWVIDIDNGNV---RLIDKSEYGLITDFDWHPNS  455 (668)
T ss_pred             CccceEEEEEcCC--CcEEEEEcCceEEEEEEecCCCe---eEecccccceeEEEEEcCCc
Confidence            6678999999998  66667676556777778876542   33445556679999999987

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.57  E-value=2.1e-07  Score=77.54  Aligned_cols=123  Identities=10%  Similarity=0.044  Sum_probs=93.4

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCcEEEEEeCCC---CceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCC
Q 036510           12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNN---TSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN   88 (288)
Q Consensus        12 ~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~   88 (288)
                      ..|.+++|...++++..|+..|.|...|+...   .+.+...+ -|..+|+++..-. .++.+|.+.+++|+|++||.+.
T Consensus       253 sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq-~s~q~LmaS~M~gkikLyD~R~  330 (425)
T KOG2695|consen  253 SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQ-FSQQKLMASDMTGKIKLYDLRA  330 (425)
T ss_pred             hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhc-cccceEeeccCcCceeEeeehh
Confidence            46667778877899999999999999998521   22333333 3888999887543 2478999999999999999986


Q ss_pred             CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCC
Q 036510           89 SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARAD  136 (288)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~  136 (288)
                      .++..-+.++.+|.+.-.-+.++-++....++++++|-+.|||.++.+
T Consensus       331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g  378 (425)
T KOG2695|consen  331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG  378 (425)
T ss_pred             hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence            554334567788887766677766655667788999999999999865

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.55  E-value=2.9e-06  Score=68.38  Aligned_cols=116  Identities=21%  Similarity=0.373  Sum_probs=80.4

Q ss_pred             eeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEE
Q 036510          152 VTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASA  231 (288)
Q Consensus       152 v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~  231 (288)
                      |.++.-.|..             .++++.|+.|+.+-+||++...   -....+..|+.+++.|-|+|..   +..|.++
T Consensus       182 v~~l~~hp~q-------------q~~v~cgt~dg~~~l~d~rn~~---~p~S~l~ahk~~i~eV~FHpk~---p~~Lft~  242 (319)
T KOG4714|consen  182 VTALCSHPAQ-------------QHLVCCGTDDGIVGLWDARNVA---MPVSLLKAHKAEIWEVHFHPKN---PEHLFTC  242 (319)
T ss_pred             chhhhCCccc-------------ccEEEEecCCCeEEEEEccccc---chHHHHHHhhhhhhheeccCCC---chheeEe
Confidence            6666666654             2789999999999999998752   2344678999999999999964   5678899


Q ss_pred             eCCCcEEEEEeecCCCc----------c-cceEee------c-cccCeEEE-EeecCCCEEEEEeCCCcEEEeE
Q 036510          232 SEDGKVIIWTVAREGDQ----------W-EGKVLH------D-FKTPVYRV-SWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       232 s~D~~i~iw~~~~~~~~----------~-~~~~~~------~-~~~~i~~~-~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      +.||.+..||.+.....          | +..+++      . ..+...++ .|.--|..|+.|+.-+.|.|.+
T Consensus       243 sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  243 SEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             cCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence            99999999998732100          0 000000      0 01112222 5556799999998888888875

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.54  E-value=0.00016  Score=70.77  Aligned_cols=243  Identities=19%  Similarity=0.314  Sum_probs=143.9

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEE----EeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKII----GVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE   86 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lw----d~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~   86 (288)
                      .+.|.++.+-++...|+.+-.+|.|-+.    +......+.+..+   ...|.+.+||||  +++|+....++++.+...
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD--~Ella~vT~~~~l~~mt~  149 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPD--EELLALVTGEGNLLLMTR  149 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCC--cCEEEEEeCCCEEEEEec
Confidence            4678888888888788888888988888    4433334445544   567999999976  788988888888887642


Q ss_pred             C------------CCCc-------eEEe-EEeec------------------------CCCceeEEEeccCCCCeEEEEE
Q 036510           87 G------------NSNE-------WIKD-HVFED------------------------HKSSVNSIDWAPHELGLCLACG  122 (288)
Q Consensus        87 ~------------~~~~-------~~~~-~~~~~------------------------h~~~v~~l~~~p~~~~~~l~sg  122 (288)
                      .            ..+.       |.+. ..+.+                        +.+.-..++|-.|  |.++|+.
T Consensus       150 ~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGD--G~yFAVs  227 (928)
T PF04762_consen  150 DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGD--GEYFAVS  227 (928)
T ss_pred             cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCC--CcEEEEE
Confidence            0            0000       0000 00000                        2223456778777  6677766


Q ss_pred             eC---C---CcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeec--C-CcEEEEEEe
Q 036510          123 SS---D---GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC--D-NTVKVWKLY  193 (288)
Q Consensus       123 ~~---d---~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~--d-~~i~iwd~~  193 (288)
                      +.   .   +.|++|+=.  +.++.  ..+.-.+--.+++|.|.+              +++++...  + ..|.+|. +
T Consensus       228 s~~~~~~~~R~iRVy~Re--G~L~s--tSE~v~gLe~~l~WrPsG--------------~lIA~~q~~~~~~~VvFfE-r  288 (928)
T PF04762_consen  228 SVEPETGSRRVIRVYSRE--GELQS--TSEPVDGLEGALSWRPSG--------------NLIASSQRLPDRHDVVFFE-R  288 (928)
T ss_pred             EEEcCCCceeEEEEECCC--ceEEe--ccccCCCccCCccCCCCC--------------CEEEEEEEcCCCcEEEEEe-c
Confidence            53   2   478888632  22221  222223334578999987              66776543  2 2344443 5


Q ss_pred             CCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccc-eEe-eccccCeEEEEeecC-C
Q 036510          194 NGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEG-KVL-HDFKTPVYRVSWSLT-G  270 (288)
Q Consensus       194 ~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~-~~~-~~~~~~i~~~~~spd-g  270 (288)
                      +|.+.-+..-.+......|..+.|++++    ..||..-.|. |.+|.....  .|-. ..+ ..-...+..+.|+|. .
T Consensus       289 NGLrhgeF~l~~~~~~~~v~~l~Wn~ds----~iLAv~~~~~-vqLWt~~NY--HWYLKqei~~~~~~~~~~~~Wdpe~p  361 (928)
T PF04762_consen  289 NGLRHGEFTLRFDPEEEKVIELAWNSDS----EILAVWLEDR-VQLWTRSNY--HWYLKQEIRFSSSESVNFVKWDPEKP  361 (928)
T ss_pred             CCcEeeeEecCCCCCCceeeEEEECCCC----CEEEEEecCC-ceEEEeeCC--EEEEEEEEEccCCCCCCceEECCCCC
Confidence            5543222211222345579999999985    5666666554 999986542  2221 111 111234555999995 4


Q ss_pred             CEEEEEeCCCcEEEeE
Q 036510          271 NILAVADGNNNVTLWE  286 (288)
Q Consensus       271 ~~l~s~~~d~~v~~w~  286 (288)
                      ..|.....++.+..++
T Consensus       362 ~~L~v~t~~g~~~~~~  377 (928)
T PF04762_consen  362 LRLHVLTSNGQYEIYD  377 (928)
T ss_pred             CEEEEEecCCcEEEEE
Confidence            5688888878876665

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.52  E-value=8.9e-05  Score=60.81  Aligned_cols=192  Identities=17%  Similarity=0.203  Sum_probs=104.4

Q ss_pred             eEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEec-------cccCeEEEEecCCC-C---CCEEEEeeCCCcEE
Q 036510           14 VHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSG-------HKGAVWEVAWAHPK-F---GSILASCSFDGTVI   82 (288)
Q Consensus        14 v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~-------h~~~v~~~~~~~~~-~---~~~l~s~s~d~~v~   82 (288)
                      -..++||||+.+||.+...|+|+++|+-+.   .+..+..       -..+|-++.|.... +   ...|+.-..+|.++
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~---~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~  122 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGS---ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR  122 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecccc---eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence            356899999999999999999999998532   2333322       22455666665431 1   12455556777777


Q ss_pred             EeecCC--CCceEEeEEee---cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEe
Q 036510           83 IWKEGN--SNEWIKDHVFE---DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSW  157 (288)
Q Consensus        83 iwd~~~--~~~~~~~~~~~---~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~  157 (288)
                      -+-+..  ...+...+.+.   .+...|+++.++|.. ..+++.|.....-...... ...+..++++.+-         
T Consensus       123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG~~~~~~~~s~a~-~~GLtaWRiL~~~---------  191 (282)
T PF15492_consen  123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH-RLLLVGGCEQNQDGMSKAS-SCGLTAWRILSDS---------  191 (282)
T ss_pred             eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC-CEEEEeccCCCCCcccccc-ccCceEEEEcCCC---------
Confidence            765422  23333444443   246689999999974 3444444433321111000 0011122222111         


Q ss_pred             CCCCCCCceecccccCCCceeEEeecCC------cEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEE
Q 036510          158 APSTAPGALVGSGFLDPVQKLCSGGCDN------TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASA  231 (288)
Q Consensus       158 ~p~~~~~~~~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~  231 (288)
                       |..               ..++..+|+      +-.+|.+.+.    +.......-.+.|..+..|||+    +.||+.
T Consensus       192 -Pyy---------------k~v~~~~~~~~~~~~~~~~~~~~~~----~~fs~~~~~~d~i~kmSlSPdg----~~La~i  247 (282)
T PF15492_consen  192 -PYY---------------KQVTSSEDDITASSKRRGLLRIPSF----KFFSRQGQEQDGIFKMSLSPDG----SLLACI  247 (282)
T ss_pred             -CcE---------------EEccccCccccccccccceeeccce----eeeeccccCCCceEEEEECCCC----CEEEEE
Confidence             111               111211111      1223333221    1111112345679999999984    789999


Q ss_pred             eCCCcEEEEEee
Q 036510          232 SEDGKVIIWTVA  243 (288)
Q Consensus       232 s~D~~i~iw~~~  243 (288)
                      ..+|.|.+|++=
T Consensus       248 h~sG~lsLW~iP  259 (282)
T PF15492_consen  248 HFSGSLSLWEIP  259 (282)
T ss_pred             EcCCeEEEEecC
Confidence            999999999874

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.50  E-value=4e-05  Score=68.01  Aligned_cols=114  Identities=20%  Similarity=0.360  Sum_probs=68.8

Q ss_pred             CeeEEEeCCCCCCCceecccccCCCceeE--Eeec-CCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcE
Q 036510          151 GVTSVSWAPSTAPGALVGSGFLDPVQKLC--SGGC-DNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKST  227 (288)
Q Consensus       151 ~v~~i~~~p~~~~~~~~~~~~~~~~~~l~--s~~~-d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~  227 (288)
                      .|...+|.|.+              +.++  +|.. ..++.+|-+++......++..+..  ...+.|.|+|.+    +.
T Consensus       447 ~vi~FaWEP~g--------------dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG----~f  506 (698)
T KOG2314|consen  447 SVIAFAWEPHG--------------DKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKG----RF  506 (698)
T ss_pred             heeeeeeccCC--------------CeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCC----cE
Confidence            46667787776              3333  3322 346888988753323344444433  346899999974    55


Q ss_pred             EEEE---eCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeC------CCcEEEeEc
Q 036510          228 IASA---SEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADG------NNNVTLWEE  287 (288)
Q Consensus       228 l~s~---s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~------d~~v~~w~~  287 (288)
                      +|.+   |..+.+.++|.....-.   ...+.-.-..+.+.|.|.|+|++++++      |.--++|++
T Consensus       507 vvva~l~s~~g~l~F~D~~~a~~k---~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tf  572 (698)
T KOG2314|consen  507 VVVAALVSRRGDLEFYDTDYADLK---DTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTF  572 (698)
T ss_pred             EEEEEecccccceEEEecchhhhh---hccCccccccccceECCCCCEEEEeeehhhhccccceEEEEe
Confidence            6555   45788999998742110   111111123567899999999999975      444566653

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.48  E-value=0.0001  Score=73.29  Aligned_cols=203  Identities=13%  Similarity=0.117  Sum_probs=120.3

Q ss_pred             eEEEEEcCCCCEEEEee-CCCcEEEEEeCCCCceeeEEEec--c---------------ccCeEEEEecCCCCCCEEEEe
Q 036510           14 VHDVAMDYYGKRLATAS-SDYSIKIIGVGNNTSQHLAKLSG--H---------------KGAVWEVAWAHPKFGSILASC   75 (288)
Q Consensus        14 v~~~~~s~~g~~l~s~~-~d~~i~lwd~~~~~~~~~~~~~~--h---------------~~~v~~~~~~~~~~~~~l~s~   75 (288)
                      -.+++++++++.|..+. ..+.|+.+|.....   +.++.+  .               -..-+.+++++. ++.++++.
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~---V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~-~g~LyVad  701 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVNET---VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV-NEKVYIAM  701 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCCCE---EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC-CCeEEEEE
Confidence            46788888877654444 45678888874432   222211  0               012357888753 47788898


Q ss_pred             eCCCcEEEeecCCCCceEEeEEeec---------------CCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCee
Q 036510           76 SFDGTVIIWKEGNSNEWIKDHVFED---------------HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWD  140 (288)
Q Consensus        76 s~d~~v~iwd~~~~~~~~~~~~~~~---------------h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~  140 (288)
                      +.++.|++||..++..    ..+.+               .-.....++++|++ ..++++-+.++.|++||+..+... 
T Consensus       702 ~~~~~I~v~d~~~g~v----~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG-~~LYVADs~n~~Irv~D~~tg~~~-  775 (1057)
T PLN02919        702 AGQHQIWEYNISDGVT----RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDL-KELYIADSESSSIRALDLKTGGSR-  775 (1057)
T ss_pred             CCCCeEEEEECCCCeE----EEEecCCccccCCCCccccccccCccEEEEeCCC-CEEEEEECCCCeEEEEECCCCcEE-
Confidence            9999999999865431    11111               01234568899984 345666777899999998754311 


Q ss_pred             eEEeec----------c-CC--------CCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeee
Q 036510          141 TSRIDQ----------A-HP--------VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDC  201 (288)
Q Consensus       141 ~~~~~~----------~-~~--------~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  201 (288)
                      ......          + ..        ..-..+.++|+              ++++++-+.++.|++||..++... ..
T Consensus       776 ~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~d--------------G~LYVADs~N~rIrviD~~tg~v~-ti  840 (1057)
T PLN02919        776 LLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKD--------------GQIYVADSYNHKIKKLDPATKRVT-TL  840 (1057)
T ss_pred             EEEecccccCcccccccCCCCchhhhhccCCceeeEeCC--------------CcEEEEECCCCEEEEEECCCCeEE-EE
Confidence            100000          0 00        00123333333              367888888999999998765211 11


Q ss_pred             ee----------ccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510          202 FP----------ALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE  245 (288)
Q Consensus       202 ~~----------~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~  245 (288)
                      ..          ...+.-.....|+++|++    +.+++-+.++.|++||++..
T Consensus       841 aG~G~~G~~dG~~~~a~l~~P~GIavd~dG----~lyVaDt~Nn~Irvid~~~~  890 (1057)
T PLN02919        841 AGTGKAGFKDGKALKAQLSEPAGLALGENG----RLFVADTNNSLIRYLDLNKG  890 (1057)
T ss_pred             eccCCcCCCCCcccccccCCceEEEEeCCC----CEEEEECCCCEEEEEECCCC
Confidence            00          011122245678998874    67888889999999998754

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.44  E-value=2.1e-05  Score=71.78  Aligned_cols=254  Identities=15%  Similarity=0.173  Sum_probs=153.3

Q ss_pred             CCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEE
Q 036510            3 PQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVI   82 (288)
Q Consensus         3 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~   82 (288)
                      ..+.+.||...|.-+.|+...+.|-++..+|-|.+|-+-.+....-..-.-.++-|.+++|..  +|..+...-.||.|.
T Consensus        63 mNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~--dG~kIcIvYeDGavI  140 (1189)
T KOG2041|consen   63 MNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL--DGTKICIVYEDGAVI  140 (1189)
T ss_pred             hhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC--CCcEEEEEEccCCEE
Confidence            345678999999999999988999999999999999875443322122233466788999975  489999999999998


Q ss_pred             EeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCC----eee-EE---eeccCCCCeeE
Q 036510           83 IWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGG----WDT-SR---IDQAHPVGVTS  154 (288)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~----~~~-~~---~~~~~~~~v~~  154 (288)
                      +=.+....-|.  +.+++  .....+-|++|  ..+++.+-..|.+.+||.+.+-.    .+. +.   .....+-.+..
T Consensus       141 VGsvdGNRIwg--KeLkg--~~l~hv~ws~D--~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~  214 (1189)
T KOG2041|consen  141 VGSVDGNRIWG--KELKG--QLLAHVLWSED--LEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAE  214 (1189)
T ss_pred             EEeeccceecc--hhcch--heccceeeccc--HHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccc
Confidence            86553222111  12222  12346789988  44555666678899998753210    000 00   11112223555


Q ss_pred             EEeCCCCCCCceecccccC-CCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeC
Q 036510          155 VSWAPSTAPGALVGSGFLD-PVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE  233 (288)
Q Consensus       155 i~~~p~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~  233 (288)
                      +.|.... .      ..+. +--.|+.+=..|.+.|-.-.+.+.     +.+-.-.-.|....|++++    ..||.++.
T Consensus       215 i~w~~g~-~------~~v~pdrP~lavcy~nGr~QiMR~eND~~-----Pvv~dtgm~~vgakWnh~G----~vLAvcG~  278 (1189)
T KOG2041|consen  215 IEWNTGP-Y------QPVPPDRPRLAVCYANGRMQIMRSENDPE-----PVVVDTGMKIVGAKWNHNG----AVLAVCGN  278 (1189)
T ss_pred             eeeccCc-c------ccCCCCCCEEEEEEcCceehhhhhcCCCC-----CeEEecccEeecceecCCC----cEEEEccC
Confidence            6664221 0      0111 112467777777777654433221     1111112457888999984    67877776


Q ss_pred             CC---------cEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEe
Q 036510          234 DG---------KVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLW  285 (288)
Q Consensus       234 D~---------~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w  285 (288)
                      |.         .|.++.+.-   . -...++..++.|++++|--.|-.+|.+ .|+.|.+=
T Consensus       279 ~~da~~~~d~n~v~Fysp~G---~-i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyfa  334 (1189)
T KOG2041|consen  279 DSDADEPTDSNKVHFYSPYG---H-IVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYFA  334 (1189)
T ss_pred             cccccCccccceEEEeccch---h-heEEEecCCceeeeeEEcCCceEEEEE-ecceEEEE
Confidence            53         455664431   1 123445566789999998888888776 56666553

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.43  E-value=1.9e-05  Score=72.73  Aligned_cols=189  Identities=19%  Similarity=0.227  Sum_probs=114.3

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCc
Q 036510           12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNE   91 (288)
Q Consensus        12 ~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~   91 (288)
                      +.+++.+++  ++.|+=|..+|.|++.+.+...    .+.-.|...        +.+|.+++|||+||+|.|-.+.+...
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~----~~~~~~s~~--------~~~Gey~asCS~DGkv~I~sl~~~~~  105 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP----KTNFDHSSS--------ILEGEYVASCSDDGKVVIGSLFTDDE  105 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecCCcc----ccccccccc--------ccCCceEEEecCCCcEEEeeccCCcc
Confidence            444444444  6778889999999998875431    333344433        34699999999999999988766543


Q ss_pred             eEEeEEeecCCCceeEEEeccC---CCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceec
Q 036510           92 WIKDHVFEDHKSSVNSIDWAPH---ELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG  168 (288)
Q Consensus        92 ~~~~~~~~~h~~~v~~l~~~p~---~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~  168 (288)
                      .   .++ ....++.+++++|+   ...+.+++||.-| +.++.=+--+..... ......+.|.+|.|.-         
T Consensus       106 ~---~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~g---------  170 (846)
T KOG2066|consen  106 I---TQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWRG---------  170 (846)
T ss_pred             c---eeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEecC---------
Confidence            1   222 24568999999998   2345788998888 766632211122221 2344457899999963         


Q ss_pred             ccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecccc-C-CcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEee
Q 036510          169 SGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQM-H-TDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA  243 (288)
Q Consensus       169 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-h-~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~  243 (288)
                             ++++=++.+| |+++|+.++.........-.. . .-.-..+.|.++     .+|| -++.-+|+|..++
T Consensus       171 -------~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-----~~LV-IGW~d~v~i~~I~  233 (846)
T KOG2066|consen  171 -------NLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-----DRLV-IGWGDSVKICSIK  233 (846)
T ss_pred             -------cEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCC-----CeEE-EecCCeEEEEEEe
Confidence                   4566555444 999998765321111000000 0 001134566664     3444 4555589999888

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.36  E-value=2.5e-05  Score=72.99  Aligned_cols=193  Identities=19%  Similarity=0.224  Sum_probs=122.0

Q ss_pred             CCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCC
Q 036510           23 GKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHK  102 (288)
Q Consensus        23 g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~  102 (288)
                      +..+.-|+....+-.+|+...  +..+...-....|.=++..    +++|.+|...|+|-+-|..+..   ..+++..|.
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~--~e~r~~~v~a~~v~imR~N----nr~lf~G~t~G~V~LrD~~s~~---~iht~~aHs  217 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTE--KETRTTNVSASGVTIMRYN----NRNLFCGDTRGTVFLRDPNSFE---TIHTFDAHS  217 (1118)
T ss_pred             Ccceeecchhhheeeeecccc--eeeeeeeccCCceEEEEec----CcEEEeecccceEEeecCCcCc---eeeeeeccc
Confidence            344555666666666666432  2222222223346666653    6788888888998888775543   567788888


Q ss_pred             CceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEee
Q 036510          103 SSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGG  182 (288)
Q Consensus       103 ~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~  182 (288)
                      +.|..++.+    +.+|+++|.....  +                                             .+   -
T Consensus       218 ~siSDfDv~----GNlLitCG~S~R~--~---------------------------------------------~l---~  243 (1118)
T KOG1275|consen  218 GSISDFDVQ----GNLLITCGYSMRR--Y---------------------------------------------NL---A  243 (1118)
T ss_pred             cceeeeecc----CCeEEEeeccccc--c---------------------------------------------cc---c
Confidence            888877755    3456666532211  0                                             00   1


Q ss_pred             cCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCccc-ceEeeccccCe
Q 036510          183 CDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWE-GKVLHDFKTPV  261 (288)
Q Consensus       183 ~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~-~~~~~~~~~~i  261 (288)
                      .|..|++||++.=    +.+..+..+.++ .=+.|+|..   ...++.+|.-|.+.+-|...-..+.. ...+...++.+
T Consensus       244 ~D~FvkVYDLRmm----ral~PI~~~~~P-~flrf~Psl---~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i  315 (1118)
T KOG1275|consen  244 MDPFVKVYDLRMM----RALSPIQFPYGP-QFLRFHPSL---TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGI  315 (1118)
T ss_pred             ccchhhhhhhhhh----hccCCcccccCc-hhhhhcccc---cceEEEEecccceeeccccccCCCccceeEEccCCCcc
Confidence            3677899998752    223333444443 345888864   56788999999999988433222211 22233334559


Q ss_pred             EEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          262 YRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       262 ~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      ...++|++|+.+|.|..+|.|++|.
T Consensus       316 ~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  316 SAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             eeEEecCCCceEEEecccCcEeeec
Confidence            9999999999999999999999996

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.32  E-value=0.00013  Score=64.13  Aligned_cols=240  Identities=14%  Similarity=0.177  Sum_probs=134.1

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCc-----------
Q 036510           12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGT-----------   80 (288)
Q Consensus        12 ~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~-----------   80 (288)
                      -++..+++||.|++|++.-.. -|.+|+-...  ..+.++.  ...|..+.|+|.  +.+|++.+.-+.           
T Consensus        33 ~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~--~~l~~~~--~~~V~~~~fSP~--~kYL~tw~~~pi~~pe~e~sp~~  105 (561)
T COG5354          33 WPVAYVSESPLGTYLFSEHAA-GVECWGGPSK--AKLVRFR--HPDVKYLDFSPN--EKYLVTWSREPIIEPEIEISPFT  105 (561)
T ss_pred             cchhheeecCcchheehhhcc-ceEEccccch--hheeeee--cCCceecccCcc--cceeeeeccCCccChhhccCCcc
Confidence            456678999999999876554 5788875432  2333333  456899999864  889999775444           


Q ss_pred             ----EEEeecCCCCceEEeEEeecCCCc--ee-EEEeccCCCCeEEEEEeCCCcEEEEeecCCCCe-eeEEeeccCCCCe
Q 036510           81 ----VIIWKEGNSNEWIKDHVFEDHKSS--VN-SIDWAPHELGLCLACGSSDGNISVFTARADGGW-DTSRIDQAHPVGV  152 (288)
Q Consensus        81 ----v~iwd~~~~~~~~~~~~~~~h~~~--v~-~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~v  152 (288)
                          +.+||..++.   .+..+.....+  .+ -+.|+-++  .++|-. -...+.|+++ +++.. .+...+  ...++
T Consensus       106 ~~n~~~vwd~~sg~---iv~sf~~~~q~~~~Wp~~k~s~~D--~y~ARv-v~~sl~i~e~-t~n~~~~p~~~l--r~~gi  176 (561)
T COG5354         106 SKNNVFVWDIASGM---IVFSFNGISQPYLGWPVLKFSIDD--KYVARV-VGSSLYIHEI-TDNIEEHPFKNL--RPVGI  176 (561)
T ss_pred             ccCceeEEeccCce---eEeeccccCCcccccceeeeeecc--hhhhhh-ccCeEEEEec-CCccccCchhhc--cccce
Confidence                8999987764   34444444444  44 56777663  233322 2346888986 22211 111111  13568


Q ss_pred             eEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEE-E
Q 036510          153 TSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIAS-A  231 (288)
Q Consensus       153 ~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s-~  231 (288)
                      ....|+|.+.-..   .....+.    ..+.+.++++|.+-.+.. +. .+++-.-+  =..+.|.+.+    .+|+. .
T Consensus       177 ~dFsisP~~n~~~---la~~tPE----k~~kpa~~~i~sIp~~s~-l~-tk~lfk~~--~~qLkW~~~g----~~ll~l~  241 (561)
T COG5354         177 LDFSISPEGNHDE---LAYWTPE----KLNKPAMVRILSIPKNSV-LV-TKNLFKVS--GVQLKWQVLG----KYLLVLV  241 (561)
T ss_pred             eeEEecCCCCCce---EEEEccc----cCCCCcEEEEEEccCCCe-ee-eeeeEeec--ccEEEEecCC----ceEEEEE
Confidence            8889999752100   0000000    345677888888754311 11 11111000  0234566543    12211 1


Q ss_pred             --------e--CCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeC--CCcEEEeE
Q 036510          232 --------S--EDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADG--NNNVTLWE  286 (288)
Q Consensus       232 --------s--~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~--d~~v~~w~  286 (288)
                              +  ...++.+++++...    .....+..++|...+|+|+++.|++.++  +.++-++|
T Consensus       242 ~t~~ksnKsyfgesnLyl~~~~e~~----i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~  304 (561)
T COG5354         242 MTHTKSNKSYFGESNLYLLRITERS----IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFD  304 (561)
T ss_pred             EEeeecccceeccceEEEEeecccc----cceeccccccceeeeecccCCceeEEecccccceeecc
Confidence                    1  23568888887431    1111255689999999999999988873  34444444

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=8.2e-06  Score=70.53  Aligned_cols=213  Identities=15%  Similarity=0.107  Sum_probs=136.9

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCC-CCceeeEEEeccccCeEEEEecCCCCCCEEEEeeC-CCcEEEeec
Q 036510            9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGN-NTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSF-DGTVIIWKE   86 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-d~~v~iwd~   86 (288)
                      -|.+.|+.+.. ...+++.+++.|+.++.|.-.. .-.+.+..+..|.+.|-+++-+.  ++.++.|.+. |..+|++|+
T Consensus         7 mhrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~--dg~L~~Sv~d~Dhs~KvfDv   83 (558)
T KOG0882|consen    7 MHRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY--DGWLFRSVEDPDHSVKVFDV   83 (558)
T ss_pred             cccceeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc--cceeEeeccCcccceeEEEe
Confidence            48888887644 3578999999999999997533 22244566678888888888764  4888999887 999999998


Q ss_pred             CCCCceEEeEEeecCCCceeEEEeccCCCC-eEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           87 GNSNEWIKDHVFEDHKSSVNSIDWAPHELG-LCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~-~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      .+..-. ....+.-..+.+.++ .+|.... .+.++.-.++.+.++|-+.+.+ +.....+-|..+|..+..+|.+    
T Consensus        84 En~Dmi-nmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~-q~~~fkklH~sPV~~i~y~qa~----  156 (558)
T KOG0882|consen   84 ENFDMI-NMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFC-QDGYFKKLHFSPVKKIRYNQAG----  156 (558)
T ss_pred             eccchh-hhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcC-ccceecccccCceEEEEeeccc----
Confidence            764421 011111111112221 1332111 3334446678999998765432 2223345688889999988876    


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCC-c-------eeee---eeeccccCCcceEEEEecCCCCCCCcEEEEEeCC
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNG-I-------WKMD---CFPALQMHTDWVRDVAWAPNLGLPKSTIASASED  234 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~-------~~~~---~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D  234 (288)
                                ..++|.-..|.|.-|..... +       +..+   -+..+..-+....++.|+|++    ..+++-+.|
T Consensus       157 ----------Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g----~qistl~~D  222 (558)
T KOG0882|consen  157 ----------DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG----AQISTLNPD  222 (558)
T ss_pred             ----------cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc----CcccccCcc
Confidence                      45677777788999986531 0       0001   011112233456889999984    679999999


Q ss_pred             CcEEEEEeecC
Q 036510          235 GKVIIWTVARE  245 (288)
Q Consensus       235 ~~i~iw~~~~~  245 (288)
                      ..|+++.....
T Consensus       223 rkVR~F~~KtG  233 (558)
T KOG0882|consen  223 RKVRGFVFKTG  233 (558)
T ss_pred             cEEEEEEeccc
Confidence            99999998754

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.28  E-value=0.0014  Score=58.83  Aligned_cols=183  Identities=9%  Similarity=-0.006  Sum_probs=97.8

Q ss_pred             CeEEEEecCCCCCC-EEEEeeC---CCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC--CcEEE
Q 036510           57 AVWEVAWAHPKFGS-ILASCSF---DGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD--GNISV  130 (288)
Q Consensus        57 ~v~~~~~~~~~~~~-~l~s~s~---d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d--~~i~i  130 (288)
                      ......|+++  |+ .++..+.   +..|.++|+.++..    ..+....+.....+|+||+. .++.+.+.+  ..|.+
T Consensus       189 ~~~~p~wSpD--G~~~i~y~s~~~~~~~Iyv~dl~tg~~----~~lt~~~g~~~~~~~SPDG~-~la~~~~~~g~~~Iy~  261 (419)
T PRK04043        189 LNIFPKWANK--EQTAFYYTSYGERKPTLYKYNLYTGKK----EKIASSQGMLVVSDVSKDGS-KLLLTMAPKGQPDIYL  261 (419)
T ss_pred             CeEeEEECCC--CCcEEEEEEccCCCCEEEEEECCCCcE----EEEecCCCcEEeeEECCCCC-EEEEEEccCCCcEEEE
Confidence            6678899875  65 3554443   35677778765531    22333445566788999852 344444444  35666


Q ss_pred             EeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCC--cEEEEEEeCCceeeeeeeccccC
Q 036510          131 FTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDN--TVKVWKLYNGIWKMDCFPALQMH  208 (288)
Q Consensus       131 ~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~h  208 (288)
                      +++..+. ...   ...+........|+|++.             .+..+....+  .|.+.|+.++...  .+ ...+.
T Consensus       262 ~dl~~g~-~~~---LT~~~~~d~~p~~SPDG~-------------~I~F~Sdr~g~~~Iy~~dl~~g~~~--rl-t~~g~  321 (419)
T PRK04043        262 YDTNTKT-LTQ---ITNYPGIDVNGNFVEDDK-------------RIVFVSDRLGYPNIFMKKLNSGSVE--QV-VFHGK  321 (419)
T ss_pred             EECCCCc-EEE---cccCCCccCccEECCCCC-------------EEEEEECCCCCceEEEEECCCCCeE--eC-ccCCC
Confidence            6765432 221   122222233557999873             2333433333  4666677665321  11 11221


Q ss_pred             CcceEEEEecCCCCCCCcEEEEEeCC---------CcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCC
Q 036510          209 TDWVRDVAWAPNLGLPKSTIASASED---------GKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGN  279 (288)
Q Consensus       209 ~~~V~~v~~sp~~~~~~~~l~s~s~D---------~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d  279 (288)
                        .  ...|+|++    ++|+-.+..         ..|.+.|+....    ...+... .......|+|||+.|+..+.+
T Consensus       322 --~--~~~~SPDG----~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~----~~~LT~~-~~~~~p~~SPDG~~I~f~~~~  388 (419)
T PRK04043        322 --N--NSSVSTYK----NYIVYSSRETNNEFGKNTFNLYLISTNSDY----IRRLTAN-GVNQFPRFSSDGGSIMFIKYL  388 (419)
T ss_pred             --c--CceECCCC----CEEEEEEcCCCcccCCCCcEEEEEECCCCC----eEECCCC-CCcCCeEECCCCCEEEEEEcc
Confidence              1  24899985    556665543         246666654321    1223222 223358899999988877643

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.28  E-value=1e-05  Score=72.32  Aligned_cols=73  Identities=19%  Similarity=0.321  Sum_probs=58.8

Q ss_pred             cCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          207 MHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       207 ~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      -....|.+++++|+    ...|+.|+.||.|++||....     .+......-.++-++|||+|..|++|+.-|.+++||
T Consensus       257 pL~s~v~~ca~sp~----E~kLvlGC~DgSiiLyD~~~~-----~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD  327 (545)
T PF11768_consen  257 PLPSQVICCARSPS----EDKLVLGCEDGSIILYDTTRG-----VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFD  327 (545)
T ss_pred             ecCCcceEEecCcc----cceEEEEecCCeEEEEEcCCC-----eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEE
Confidence            35557899999997    468999999999999998643     122223334568899999999999999999999999


Q ss_pred             cC
Q 036510          287 EA  288 (288)
Q Consensus       287 ~~  288 (288)
                      +|
T Consensus       328 ~A  329 (545)
T PF11768_consen  328 MA  329 (545)
T ss_pred             ee
Confidence            76

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.26  E-value=0.00026  Score=65.44  Aligned_cols=244  Identities=16%  Similarity=0.167  Sum_probs=143.4

Q ss_pred             eEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCC----------CCEEEEeeCCCcEEE
Q 036510           14 VHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKF----------GSILASCSFDGTVII   83 (288)
Q Consensus        14 v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~----------~~~l~s~s~d~~v~i   83 (288)
                      -..+.|+|.| +||=||.. .|.+-|.  ...+.+.++.-|+..|+.++|.|-..          .-+++++...|.|.+
T Consensus        18 ~~A~Dw~~~G-LiAygshs-lV~VVDs--~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil   93 (1062)
T KOG1912|consen   18 RNAADWSPSG-LIAYGSHS-LVSVVDS--RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL   93 (1062)
T ss_pred             ccccccCccc-eEEEecCc-eEEEEeh--hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence            3456789888 55555544 5666665  34567888999999999999986321          136678888999999


Q ss_pred             eecCCCCceEEeEEeecCCCceeEEEeccCC--CCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCC
Q 036510           84 WKEGNSNEWIKDHVFEDHKSSVNSIDWAPHE--LGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPST  161 (288)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~--~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~  161 (288)
                      ||.....   .+..+..|.+++..+.|-|..  +-.+|++-....+|.+|+..+++.+  ++..-+| ....++.+.|..
T Consensus        94 ~d~~~~s---~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~--Wk~~ys~-~iLs~f~~DPfd  167 (1062)
T KOG1912|consen   94 VDFVLAS---VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKF--WKYDYSH-EILSCFRVDPFD  167 (1062)
T ss_pred             EEehhhh---hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCcee--eccccCC-cceeeeeeCCCC
Confidence            9987543   223466788899999986643  2245565666789999998876532  2222222 335568888876


Q ss_pred             CCCceecccccCCCceeEEeecCCcEEEEEEeCC---ceeeeeeeccccCCc-------------------------ceE
Q 036510          162 APGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNG---IWKMDCFPALQMHTD-------------------------WVR  213 (288)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~h~~-------------------------~V~  213 (288)
                      .             +.++.-+..|.+-+-+....   .-..+..+.-..|.+                         +.-
T Consensus       168 ~-------------rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a  234 (1062)
T KOG1912|consen  168 S-------------RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCA  234 (1062)
T ss_pred             c-------------ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHH
Confidence            4             22222222333333332110   000000000011111                         122


Q ss_pred             EEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCC--EEEEEeCCCcEEEeEc
Q 036510          214 DVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGN--ILAVADGNNNVTLWEE  287 (288)
Q Consensus       214 ~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~--~l~s~~~d~~v~~w~~  287 (288)
                      -++|+|.-    +-++-......+.++|++.+.  . ...+.=..+.+.-+.+-|+++  .|...-.||.+.+|..
T Consensus       235 ~faf~p~~----rn~lfi~~prellv~dle~~~--~-l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvr  303 (1062)
T KOG1912|consen  235 QFAFSPHW----RNILFITFPRELLVFDLEYEC--C-LAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVR  303 (1062)
T ss_pred             hhhcChhh----hceEEEEeccceEEEcchhhc--e-eEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence            24667753    234445567789999987542  1 111111234455677778875  4778889999999963

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.21  E-value=7.6e-07  Score=79.89  Aligned_cols=209  Identities=17%  Similarity=0.243  Sum_probs=125.5

Q ss_pred             cceEEEEEcCCC--CEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEee----CCCcEEEee
Q 036510           12 DTVHDVAMDYYG--KRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCS----FDGTVIIWK   85 (288)
Q Consensus        12 ~~v~~~~~s~~g--~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s----~d~~v~iwd   85 (288)
                      ..+.+++.+-+.  -+++.|..+|.|-+-.+.......-....+|....++++|++- |.+.||.|-    .|..+.|||
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneL-Dtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNEL-DTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccc-cHHHHHhhhhhhcccCCcccee
Confidence            345556554433  4678899999999887643322223345678889999999863 567787763    588999999


Q ss_pred             cCCCCceE-EeEEeec-CCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCC
Q 036510           86 EGNSNEWI-KDHVFED-HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAP  163 (288)
Q Consensus        86 ~~~~~~~~-~~~~~~~-h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~  163 (288)
                      +...-+.+ ....+.. -....++++|-.+  .+++.+|...+++.++|+|....    ......+..+.-+..+|..+ 
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd--~klvlaGm~sr~~~ifdlRqs~~----~~~svnTk~vqG~tVdp~~~-  208 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRD--TKLVLAGMTSRSVHIFDLRQSLD----SVSSVNTKYVQGITVDPFSP-  208 (783)
T ss_pred             cccccCCCccccccccccccCccccccccC--cchhhcccccchhhhhhhhhhhh----hhhhhhhhhcccceecCCCC-
Confidence            86541110 0011111 2234557777654  67788898889999999984311    11111112233344445332 


Q ss_pred             CceecccccCCCceeEEeecCCcEEEEEE-eCCceeeee-eeccccCCcceEEEEecCCCCCCCcEEEEEeCCC-cEEEE
Q 036510          164 GALVGSGFLDPVQKLCSGGCDNTVKVWKL-YNGIWKMDC-FPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG-KVIIW  240 (288)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~-~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~-~i~iw  240 (288)
                                  +++|+.. |+.|-+||. +.-...+.. .+.-......+..++|+|..   ..++++...|. +|+.+
T Consensus       209 ------------nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr---tglla~l~RdS~tIrly  272 (783)
T KOG1008|consen  209 ------------NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR---TGLLAVLSRDSITIRLY  272 (783)
T ss_pred             ------------Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC---cchhhhhccCcceEEEe
Confidence                        5688766 899999994 322111110 00001112248899999975   45788888754 89999


Q ss_pred             Eeec
Q 036510          241 TVAR  244 (288)
Q Consensus       241 ~~~~  244 (288)
                      ++..
T Consensus       273 di~~  276 (783)
T KOG1008|consen  273 DICV  276 (783)
T ss_pred             cccc
Confidence            9875

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.17  E-value=0.0018  Score=56.94  Aligned_cols=187  Identities=11%  Similarity=0.131  Sum_probs=112.5

Q ss_pred             CCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCC--------CceeEEE-eccCCCCeEEEEEeCCCcEEEEeecCCC
Q 036510           67 KFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHK--------SSVNSID-WAPHELGLCLACGSSDGNISVFTARADG  137 (288)
Q Consensus        67 ~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~--------~~v~~l~-~~p~~~~~~l~sg~~d~~i~i~d~~~~~  137 (288)
                      .+|..++- ++.|.|.++|..+.....+..-++..+        .+..-+. |++.+ +.+++..+. |...|.+.-.+ 
T Consensus       276 sDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~-Gd~ia~VSR-GkaFi~~~~~~-  351 (668)
T COG4946         276 SDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVN-GDYIALVSR-GKAFIMRPWDG-  351 (668)
T ss_pred             CCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCC-CcEEEEEec-CcEEEECCCCC-
Confidence            35776665 566899999987643211111111111        1111121 34432 555665554 44555543222 


Q ss_pred             CeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCC-cEEEEEEeCCceeeeeeeccccCCcceEEEE
Q 036510          138 GWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDN-TVKVWKLYNGIWKMDCFPALQMHTDWVRDVA  216 (288)
Q Consensus       138 ~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~  216 (288)
                          ..+.-+|+..|.-..+..+.              .-++.|..|+ .+-|+|..++.     +..+...-+.|.+|.
T Consensus       352 ----~~iqv~~~~~VrY~r~~~~~--------------e~~vigt~dgD~l~iyd~~~~e-----~kr~e~~lg~I~av~  408 (668)
T COG4946         352 ----YSIQVGKKGGVRYRRIQVDP--------------EGDVIGTNDGDKLGIYDKDGGE-----VKRIEKDLGNIEAVK  408 (668)
T ss_pred             ----eeEEcCCCCceEEEEEccCC--------------cceEEeccCCceEEEEecCCce-----EEEeeCCccceEEEE
Confidence                12223455555554444333              3467777888 79999998873     223344556799999


Q ss_pred             ecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEee-ccccCeEEEEeecCCCEEEEEeCCC----cEEEeEcC
Q 036510          217 WAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLH-DFKTPVYRVSWSLTGNILAVADGNN----NVTLWEEA  288 (288)
Q Consensus       217 ~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~-~~~~~i~~~~~spdg~~l~s~~~d~----~v~~w~~~  288 (288)
                      .+|++    +++|.+..-..|-+.|+....    .+.+. .-.+-|+...|||++++||.+=.+|    .|+|+|++
T Consensus       409 vs~dG----K~~vvaNdr~el~vididngn----v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~  477 (668)
T COG4946         409 VSPDG----KKVVVANDRFELWVIDIDNGN----VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD  477 (668)
T ss_pred             EcCCC----cEEEEEcCceEEEEEEecCCC----eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC
Confidence            99984    678888888888888887542    12222 2235799999999999999996665    68888863

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.16  E-value=2.6e-06  Score=79.15  Aligned_cols=220  Identities=17%  Similarity=0.233  Sum_probs=130.4

Q ss_pred             ccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEee-CC-CcEE
Q 036510            5 KIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCS-FD-GTVI   82 (288)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~d-~~v~   82 (288)
                      +.+..|+..-++++|+-+.+.|+.|+..|.|+++++..+  .......+|..+|+.+.=+.  +|...++.| .. .-..
T Consensus      1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG--~~e~s~ncH~SavT~vePs~--dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG--SMEESVNCHQSAVTLVEPSV--DGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCc--cccccccccccccccccccC--CcceeeeeccccCchHH
Confidence            455678888899999998899999999999999998644  44667889999999998544  465555433 33 3577


Q ss_pred             EeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEe-eccCCCCeeEEEeCCCC
Q 036510           83 IWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRI-DQAHPVGVTSVSWAPST  161 (288)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~v~~i~~~p~~  161 (288)
                      +|++....  ...+++.    .-.++.|+-. .... +.|..-....+||+.+...++.... .-+.+..-....|+|..
T Consensus      1171 LW~~~s~~--~~~Hsf~----ed~~vkFsn~-~q~r-~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D 1242 (1516)
T KOG1832|consen 1171 LWDASSTG--GPRHSFD----EDKAVKFSNS-LQFR-ALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCD 1242 (1516)
T ss_pred             Hhcccccc--Ccccccc----ccceeehhhh-HHHH-HhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCc
Confidence            99986532  2344442    3467788754 1222 2333334577899987654433111 11111122456677765


Q ss_pred             CCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEE
Q 036510          162 APGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT  241 (288)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~  241 (288)
                                    .++.   .||  -+||++..+    -++.+......+.. -|+|++    ..++--+.     |||
T Consensus      1243 --------------~LIl---ndG--vLWDvR~~~----aIh~FD~ft~~~~G-~FHP~g----~eVIINSE-----IwD 1289 (1516)
T KOG1832|consen 1243 --------------TLIL---NDG--VLWDVRIPE----AIHRFDQFTDYGGG-GFHPSG----NEVIINSE-----IWD 1289 (1516)
T ss_pred             --------------ceEe---eCc--eeeeeccHH----HHhhhhhheecccc-cccCCC----ceEEeech-----hhh
Confidence                          2222   133  369998752    23333333322222 688874    44544443     898


Q ss_pred             eecCCCcccceEeeccc-cCeEEEEeecCCCEEEE
Q 036510          242 VAREGDQWEGKVLHDFK-TPVYRVSWSLTGNILAV  275 (288)
Q Consensus       242 ~~~~~~~~~~~~~~~~~-~~i~~~~~spdg~~l~s  275 (288)
                      ++.-      .+++... =.-..+.|+..|..++.
T Consensus      1290 ~RTF------~lLh~VP~Ldqc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1290 MRTF------KLLHSVPSLDQCAVTFNSTGDVMYA 1318 (1516)
T ss_pred             hHHH------HHHhcCccccceEEEeccCccchhh
Confidence            8742      2222221 12356888888887653

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.13  E-value=2e-05  Score=66.02  Aligned_cols=153  Identities=16%  Similarity=0.206  Sum_probs=97.7

Q ss_pred             CCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC---CceEEeEEe
Q 036510           22 YGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS---NEWIKDHVF   98 (288)
Q Consensus        22 ~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~~   98 (288)
                      .|-. ++.+.+-.|-|-++..+..   ..+. -+++|.++.|..  .++++..|..+|.|-..|++..   +.|. .+.+
T Consensus       224 ~gyh-fs~G~sqqv~L~nvetg~~---qsf~-sksDVfAlQf~~--s~nLv~~GcRngeI~~iDLR~rnqG~~~~-a~rl  295 (425)
T KOG2695|consen  224 MGYH-FSVGLSQQVLLTNVETGHQ---QSFQ-SKSDVFALQFAG--SDNLVFNGCRNGEIFVIDLRCRNQGNGWC-AQRL  295 (425)
T ss_pred             ceee-ecccccceeEEEEeecccc---cccc-cchhHHHHHhcc--cCCeeEecccCCcEEEEEeeecccCCCcc-eEEE
Confidence            3544 6667777777777654322   2222 467788888853  3689999999999999999754   2232 2233


Q ss_pred             ecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCcee
Q 036510           99 EDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKL  178 (288)
Q Consensus        99 ~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l  178 (288)
                      . |...|+++..--- +...|.+.+.+|+|.+||.|.-..-...+..++|-..-.-+-+.-+.            ....+
T Consensus       296 y-h~Ssvtslq~Lq~-s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~------------eeg~I  361 (425)
T KOG2695|consen  296 Y-HDSSVTSLQILQF-SQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE------------EEGSI  361 (425)
T ss_pred             E-cCcchhhhhhhcc-ccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccc------------ccceE
Confidence            3 7788888754321 13456667799999999998643212245567775433333222111            13567


Q ss_pred             EEeecCCcEEEEEEeCCc
Q 036510          179 CSGGCDNTVKVWKLYNGI  196 (288)
Q Consensus       179 ~s~~~d~~i~iwd~~~~~  196 (288)
                      ++++.|-..|||.+..+.
T Consensus       362 ~s~GdDcytRiWsl~~gh  379 (425)
T KOG2695|consen  362 FSVGDDCYTRIWSLDSGH  379 (425)
T ss_pred             EEccCeeEEEEEecccCc
Confidence            889999999999998763

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=4.4e-05  Score=66.14  Aligned_cols=210  Identities=13%  Similarity=0.075  Sum_probs=130.6

Q ss_pred             ccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeC-CCcEEEE
Q 036510           53 GHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSS-DGNISVF  131 (288)
Q Consensus        53 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~-d~~i~i~  131 (288)
                      -|.+.|+.+.-.   ..+++.++|.||.++.|--....-...+.-+..|...|.+++.+-+  +.++.+.+. |..++++
T Consensus         7 mhrd~i~hv~~t---ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~d--g~L~~Sv~d~Dhs~Kvf   81 (558)
T KOG0882|consen    7 MHRDVITHVFPT---KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYD--GWLFRSVEDPDHSVKVF   81 (558)
T ss_pred             cccceeeeEeee---hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcccc--ceeEeeccCcccceeEE
Confidence            377777776533   3679999999999999965321111112223457788888887766  677888766 9999999


Q ss_pred             eecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEe-ecCCcEEEEEEeCCceeeeeeeccccCCc
Q 036510          132 TARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSG-GCDNTVKVWKLYNGIWKMDCFPALQMHTD  210 (288)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~h~~  210 (288)
                      |+.+-.-.+- ..+..-+..+ ++..+|...            ...++.+ -.++.+.++|-.....  +....-..|..
T Consensus        82 DvEn~Dminm-iKL~~lPg~a-~wv~skGd~------------~s~IAVs~~~sg~i~VvD~~~d~~--q~~~fkklH~s  145 (558)
T KOG0882|consen   82 DVENFDMINM-IKLVDLPGFA-EWVTSKGDK------------ISLIAVSLFKSGKIFVVDGFGDFC--QDGYFKKLHFS  145 (558)
T ss_pred             Eeeccchhhh-cccccCCCce-EEecCCCCe------------eeeEEeecccCCCcEEECCcCCcC--ccceecccccC
Confidence            9875321110 0111122222 222233221            1233333 3456688888654321  12223367999


Q ss_pred             ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEe---------ecc---ccCeEEEEeecCCCEEEEEeC
Q 036510          211 WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVL---------HDF---KTPVYRVSWSLTGNILAVADG  278 (288)
Q Consensus       211 ~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~---------~~~---~~~i~~~~~spdg~~l~s~~~  278 (288)
                      +|..+.++|.+    ..++|.-..|.|.-|......+..+..+.         .++   ++...++.|+|+|..++.-+.
T Consensus       146 PV~~i~y~qa~----Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~  221 (558)
T KOG0882|consen  146 PVKKIRYNQAG----DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP  221 (558)
T ss_pred             ceEEEEeeccc----cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCc
Confidence            99999999974    45777777889999988732111111111         111   345789999999999999999


Q ss_pred             CCcEEEeEc
Q 036510          279 NNNVTLWEE  287 (288)
Q Consensus       279 d~~v~~w~~  287 (288)
                      |.+|++++.
T Consensus       222 DrkVR~F~~  230 (558)
T KOG0882|consen  222 DRKVRGFVF  230 (558)
T ss_pred             ccEEEEEEe
Confidence            999999874

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.11  E-value=0.0035  Score=56.31  Aligned_cols=190  Identities=7%  Similarity=-0.004  Sum_probs=95.1

Q ss_pred             ceEEEEEcCCCCE-EEEeeCC---CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEE-EEeeCCC--cEEEee
Q 036510           13 TVHDVAMDYYGKR-LATASSD---YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSIL-ASCSFDG--TVIIWK   85 (288)
Q Consensus        13 ~v~~~~~s~~g~~-l~s~~~d---~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~d~--~v~iwd   85 (288)
                      ....-.|+|||+. ++-.+.+   ..|.++|+..+..+.+   ....+......|+++  |+.+ ++.+.++  .|.+++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l---t~~~g~~~~~~~SPD--G~~la~~~~~~g~~~Iy~~d  263 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI---ASSQGMLVVSDVSKD--GSKLLLTMAPKGQPDIYLYD  263 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE---ecCCCcEEeeEECCC--CCEEEEEEccCCCcEEEEEE
Confidence            4556789999984 5544544   4466667654433333   233445566789875  6544 4555454  455556


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCC--cEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCC
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDG--NISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAP  163 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~  163 (288)
                      +..+. .   ..+..+........|+||+. .++.+....+  .|.++|+..+. .... ...+.    ....|+|++. 
T Consensus       264 l~~g~-~---~~LT~~~~~d~~p~~SPDG~-~I~F~Sdr~g~~~Iy~~dl~~g~-~~rl-t~~g~----~~~~~SPDG~-  331 (419)
T PRK04043        264 TNTKT-L---TQITNYPGIDVNGNFVEDDK-RIVFVSDRLGYPNIFMKKLNSGS-VEQV-VFHGK----NNSSVSTYKN-  331 (419)
T ss_pred             CCCCc-E---EEcccCCCccCccEECCCCC-EEEEEECCCCCceEEEEECCCCC-eEeC-ccCCC----cCceECCCCC-
Confidence            65443 2   22333333334567999953 3333333344  45555654332 1111 11111    1248999883 


Q ss_pred             CceecccccCCCceeE-EeecC--------CcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeC-
Q 036510          164 GALVGSGFLDPVQKLC-SGGCD--------NTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE-  233 (288)
Q Consensus       164 ~~~~~~~~~~~~~~l~-s~~~d--------~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~-  233 (288)
                                   .++ +....        ..|.+.|+.++..  +.   +... .......|+||+    ++|+-.+. 
T Consensus       332 -------------~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~--~~---LT~~-~~~~~p~~SPDG----~~I~f~~~~  388 (419)
T PRK04043        332 -------------YIVYSSRETNNEFGKNTFNLYLISTNSDYI--RR---LTAN-GVNQFPRFSSDG----GSIMFIKYL  388 (419)
T ss_pred             -------------EEEEEEcCCCcccCCCCcEEEEEECCCCCe--EE---CCCC-CCcCCeEECCCC----CEEEEEEcc
Confidence                         333 22222        2567777766531  21   2211 122357899985    45555443 


Q ss_pred             CCcEEEEEe
Q 036510          234 DGKVIIWTV  242 (288)
Q Consensus       234 D~~i~iw~~  242 (288)
                      .+.-.++-+
T Consensus       389 ~~~~~L~~~  397 (419)
T PRK04043        389 GNQSALGII  397 (419)
T ss_pred             CCcEEEEEE
Confidence            333334433

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.08  E-value=0.00055  Score=63.52  Aligned_cols=158  Identities=16%  Similarity=0.250  Sum_probs=97.4

Q ss_pred             ccccceEEEEEcC-------------CCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCC---CCCCEE
Q 036510            9 GHEDTVHDVAMDY-------------YGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHP---KFGSIL   72 (288)
Q Consensus         9 ~h~~~v~~~~~s~-------------~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~~l   72 (288)
                      -|.+.|+-..+.-             +|.|++|||.||+|.|-.+...  +...++. .+-++..+++.|+   +....|
T Consensus        56 tH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~--~~~~~~d-f~rpiksial~Pd~~~~~sk~f  132 (846)
T KOG2066|consen   56 THRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTD--DEITQYD-FKRPIKSIALHPDFSRQQSKQF  132 (846)
T ss_pred             cccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCC--ccceeEe-cCCcceeEEeccchhhhhhhhe
Confidence            4666666655443             4999999999999999877433  3333333 3567888998765   246789


Q ss_pred             EEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCC---
Q 036510           73 ASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHP---  149 (288)
Q Consensus        73 ~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~---  149 (288)
                      ++|+.-| +.++.-.=-+.+.. ..+..-.++|.++.|..    .++|=++.+| +++||+...+...  .+...+.   
T Consensus       133 v~GG~ag-lvL~er~wlgnk~~-v~l~~~eG~I~~i~W~g----~lIAWand~G-v~vyd~~~~~~l~--~i~~p~~~~R  203 (846)
T KOG2066|consen  133 VSGGMAG-LVLSERNWLGNKDS-VVLSEGEGPIHSIKWRG----NLIAWANDDG-VKVYDTPTRQRLT--NIPPPSQSVR  203 (846)
T ss_pred             eecCcce-EEEehhhhhcCccc-eeeecCccceEEEEecC----cEEEEecCCC-cEEEeccccceee--ccCCCCCCCC
Confidence            9999988 77764211111111 13445678999999985    4566666555 8999987654321  1111111   


Q ss_pred             --CCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeC
Q 036510          150 --VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYN  194 (288)
Q Consensus       150 --~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  194 (288)
                        ..-..+.|.++               ..|+- |+..+|+|..++.
T Consensus       204 ~e~fpphl~W~~~---------------~~LVI-GW~d~v~i~~I~~  234 (846)
T KOG2066|consen  204 PELFPPHLHWQDE---------------DRLVI-GWGDSVKICSIKK  234 (846)
T ss_pred             cccCCCceEecCC---------------CeEEE-ecCCeEEEEEEec
Confidence              11223556554               34555 4666888888873

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.07  E-value=0.0032  Score=55.74  Aligned_cols=188  Identities=12%  Similarity=0.146  Sum_probs=92.4

Q ss_pred             CCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEE--eccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeec
Q 036510           69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSID--WAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQ  146 (288)
Q Consensus        69 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~--~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~  146 (288)
                      +..++.++.++.+..||..++..   ...+.... +...+.  -+|.-.+..++.+..++.+..+|.+++..  .+....
T Consensus       145 ~~~v~v~~~~g~l~a~d~~tG~~---~W~~~~~~-~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~--~W~~~~  218 (377)
T TIGR03300       145 NGLVVVRTNDGRLTALDAATGER---LWTYSRVT-PALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQP--LWEQRV  218 (377)
T ss_pred             CCEEEEECCCCeEEEEEcCCCce---eeEEccCC-CceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCE--eeeecc
Confidence            34566677789999999877652   12221111 111110  01110012456677788888888876532  111110


Q ss_pred             cCCCC---eeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCC
Q 036510          147 AHPVG---VTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGL  223 (288)
Q Consensus       147 ~~~~~---v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~  223 (288)
                      ..+..   +..+...        ....... +..++.++.++.+..+|..++.    .+.... ... .......     
T Consensus       219 ~~~~g~~~~~~~~~~--------~~~p~~~-~~~vy~~~~~g~l~a~d~~tG~----~~W~~~-~~~-~~~p~~~-----  278 (377)
T TIGR03300       219 ALPKGRTELERLVDV--------DGDPVVD-GGQVYAVSYQGRVAALDLRSGR----VLWKRD-ASS-YQGPAVD-----  278 (377)
T ss_pred             ccCCCCCchhhhhcc--------CCccEEE-CCEEEEEEcCCEEEEEECCCCc----EEEeec-cCC-ccCceEe-----
Confidence            00000   0000000        0000111 2456777789999999998773    222211 111 0111111     


Q ss_pred             CCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          224 PKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       224 ~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                       +.+|..++.|+.+..+|.......++...+..  ....+..  ..|..+++++.||.|+++|.
T Consensus       279 -~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~--~~~ssp~--i~g~~l~~~~~~G~l~~~d~  337 (377)
T TIGR03300       279 -DNRLYVTDADGVVVALDRRSGSELWKNDELKY--RQLTAPA--VVGGYLVVGDFEGYLHWLSR  337 (377)
T ss_pred             -CCEEEEECCCCeEEEEECCCCcEEEccccccC--CccccCE--EECCEEEEEeCCCEEEEEEC
Confidence             34677888999999999865432222211110  0111111  14678888999999999884

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.06  E-value=5.7e-05  Score=70.71  Aligned_cols=146  Identities=13%  Similarity=0.250  Sum_probs=101.3

Q ss_pred             CCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEee---------CCCcEEEeecCCCCc
Q 036510           21 YYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCS---------FDGTVIIWKEGNSNE   91 (288)
Q Consensus        21 ~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---------~d~~v~iwd~~~~~~   91 (288)
                      .+++++.+|...|+|.|-|...  .+.++++.+|++.|.++...    |++|++|+         .|..|+|||++.-..
T Consensus       185 ~Nnr~lf~G~t~G~V~LrD~~s--~~~iht~~aHs~siSDfDv~----GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra  258 (1118)
T KOG1275|consen  185 YNNRNLFCGDTRGTVFLRDPNS--FETIHTFDAHSGSISDFDVQ----GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA  258 (1118)
T ss_pred             ecCcEEEeecccceEEeecCCc--Cceeeeeeccccceeeeecc----CCeEEEeecccccccccccchhhhhhhhhhhc
Confidence            3578899999999999988753  46789999999999877652    88999987         588899999876432


Q ss_pred             eEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccC--CCCeeEEEeCCCCCCCceecc
Q 036510           92 WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAH--PVGVTSVSWAPSTAPGALVGS  169 (288)
Q Consensus        92 ~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~--~~~v~~i~~~p~~~~~~~~~~  169 (288)
                      .   ..+.-+.++ .-+.|+|.- ...++..+..|...+-|...-.. .+....+.+  ...+..+++++++        
T Consensus       259 l---~PI~~~~~P-~flrf~Psl-~t~~~V~S~sGq~q~vd~~~lsN-P~~~~~~v~p~~s~i~~fDiSsn~--------  324 (1118)
T KOG1275|consen  259 L---SPIQFPYGP-QFLRFHPSL-TTRLAVTSQSGQFQFVDTATLSN-PPAGVKMVNPNGSGISAFDISSNG--------  324 (1118)
T ss_pred             c---CCcccccCc-hhhhhcccc-cceEEEEecccceeeccccccCC-CccceeEEccCCCcceeEEecCCC--------
Confidence            1   112223333 567888875 34577778888888887432111 011111222  3346777777765        


Q ss_pred             cccCCCceeEEeecCCcEEEEEE
Q 036510          170 GFLDPVQKLCSGGCDNTVKVWKL  192 (288)
Q Consensus       170 ~~~~~~~~l~s~~~d~~i~iwd~  192 (288)
                            +.++-|..++.|.+|--
T Consensus       325 ------~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  325 ------DALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             ------ceEEEecccCcEeeecC
Confidence                  78999999999999973

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.04  E-value=0.00061  Score=61.30  Aligned_cols=74  Identities=18%  Similarity=0.239  Sum_probs=57.5

Q ss_pred             CCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEE
Q 036510          101 HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCS  180 (288)
Q Consensus       101 h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s  180 (288)
                      ....|.|++++|++  ..++.|+.||+|.+||...+...  .   .........++|.|++              .+++.
T Consensus       258 L~s~v~~ca~sp~E--~kLvlGC~DgSiiLyD~~~~~t~--~---~ka~~~P~~iaWHp~g--------------ai~~V  316 (545)
T PF11768_consen  258 LPSQVICCARSPSE--DKLVLGCEDGSIILYDTTRGVTL--L---AKAEFIPTLIAWHPDG--------------AIFVV  316 (545)
T ss_pred             cCCcceEEecCccc--ceEEEEecCCeEEEEEcCCCeee--e---eeecccceEEEEcCCC--------------cEEEE
Confidence            56689999999985  45788999999999998764221  1   1233457789999997              67899


Q ss_pred             eecCCcEEEEEEeCC
Q 036510          181 GGCDNTVKVWKLYNG  195 (288)
Q Consensus       181 ~~~d~~i~iwd~~~~  195 (288)
                      |+..|.+.+||+.-+
T Consensus       317 ~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  317 GSEQGELQCFDMALS  331 (545)
T ss_pred             EcCCceEEEEEeecC
Confidence            999999999999543

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.96  E-value=5e-06  Score=74.82  Aligned_cols=207  Identities=18%  Similarity=0.270  Sum_probs=122.6

Q ss_pred             ccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEE----eCCCcEEE
Q 036510           55 KGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACG----SSDGNISV  130 (288)
Q Consensus        55 ~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg----~~d~~i~i  130 (288)
                      ...+.+++++...+..+++.|.++|.|.+-..++.-.. --...+++...+++++|++-+. ..||+|    ..|-.+.|
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-s~E~tp~~ar~Ct~lAwneLDt-n~LAagldkhrnds~~~I  133 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-SAEVTPGYARPCTSLAWNELDT-NHLAAGLDKHRNDSSLKI  133 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-cceecccccccccccccccccH-HHHHhhhhhhcccCCccc
Confidence            34567788776544578899999999999877653211 1123467788999999998643 345555    34557899


Q ss_pred             EeecCCC--CeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccC
Q 036510          131 FTARADG--GWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMH  208 (288)
Q Consensus       131 ~d~~~~~--~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h  208 (288)
                      ||+...-  .........+......++.|..+.              .++.+|...++++++|++....   ....+  .
T Consensus       134 wdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~--------------klvlaGm~sr~~~ifdlRqs~~---~~~sv--n  194 (783)
T KOG1008|consen  134 WDINSLLTVPKESPLFSSSTLDGQNSVCWLRDT--------------KLVLAGMTSRSVHIFDLRQSLD---SVSSV--N  194 (783)
T ss_pred             eecccccCCCccccccccccccCccccccccCc--------------chhhcccccchhhhhhhhhhhh---hhhhh--h
Confidence            9987541  111111111122234456665443              6788999999999999984311   11111  2


Q ss_pred             CcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEe-ecCCCcccceEeecc---ccCeEEEEeecCCC-EEEEEeCC-CcE
Q 036510          209 TDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV-AREGDQWEGKVLHDF---KTPVYRVSWSLTGN-ILAVADGN-NNV  282 (288)
Q Consensus       209 ~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~-~~~~~~~~~~~~~~~---~~~i~~~~~spdg~-~l~s~~~d-~~v  282 (288)
                      +..|..+...|-.   +.|+++-+ |+.|-+||. ...+.+. ....+..   .+.+..++|.|.-+ .+++...| ++|
T Consensus       195 Tk~vqG~tVdp~~---~nY~cs~~-dg~iAiwD~~rnienpl-~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tI  269 (783)
T KOG1008|consen  195 TKYVQGITVDPFS---PNYFCSNS-DGDIAIWDTYRNIENPL-QIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITI  269 (783)
T ss_pred             hhhcccceecCCC---CCceeccc-cCceeeccchhhhccHH-HHHhhCCCCcccceeeEEeccCCcchhhhhccCcceE
Confidence            2234555555632   35776655 999999994 3221111 0111110   12488999999753 55666554 678


Q ss_pred             EEeEc
Q 036510          283 TLWEE  287 (288)
Q Consensus       283 ~~w~~  287 (288)
                      +++++
T Consensus       270 rlydi  274 (783)
T KOG1008|consen  270 RLYDI  274 (783)
T ss_pred             EEecc
Confidence            88874

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.92  E-value=0.0061  Score=57.31  Aligned_cols=200  Identities=13%  Similarity=0.145  Sum_probs=118.2

Q ss_pred             EEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCc-----EEEeecCCC--C
Q 036510           18 AMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGT-----VIIWKEGNS--N   90 (288)
Q Consensus        18 ~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~-----v~iwd~~~~--~   90 (288)
                      +|++.+-.++-|+.+|.|.+.+-   ..+.++.+.+|..++...-|.-. .-.+|++.+.|.+     ++||++...  +
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~---s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n  105 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNS---SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKN  105 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecc---cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCC
Confidence            46777888999999998877653   33445777788877322223221 2358888887765     899998532  2


Q ss_pred             c-eEEe---EEee----cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEe--ecCCCCeeeEEeeccCCCCeeEEEeCCC
Q 036510           91 E-WIKD---HVFE----DHKSSVNSIDWAPHELGLCLACGSSDGNISVFT--ARADGGWDTSRIDQAHPVGVTSVSWAPS  160 (288)
Q Consensus        91 ~-~~~~---~~~~----~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d--~~~~~~~~~~~~~~~~~~~v~~i~~~p~  160 (288)
                      . ..++   +.++    ....++.+++++-+  -..+|+|=.+|.|..+.  +-++... ..........+|+.+.+..+
T Consensus       106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~--l~~Iv~Gf~nG~V~~~~GDi~RDrgs-r~~~~~~~~~pITgL~~~~d  182 (933)
T KOG2114|consen  106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSED--LKTIVCGFTNGLVICYKGDILRDRGS-RQDYSHRGKEPITGLALRSD  182 (933)
T ss_pred             CCcceeeeeeeeccCCCCCCCcceEEEEEcc--ccEEEEEecCcEEEEEcCcchhcccc-ceeeeccCCCCceeeEEecC
Confidence            2 1122   1111    23557888988876  56788888888887763  2111111 11111112345776666544


Q ss_pred             CCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEE
Q 036510          161 TAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIW  240 (288)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw  240 (288)
                      +              ..++=...-..|.+|.+.... +  ....+..|.-.++|..|++..   ++.+++++.  -+.+|
T Consensus       183 ~--------------~s~lFv~Tt~~V~~y~l~gr~-p--~~~~ld~~G~~lnCss~~~~t---~qfIca~~e--~l~fY  240 (933)
T KOG2114|consen  183 G--------------KSVLFVATTEQVMLYSLSGRT-P--SLKVLDNNGISLNCSSFSDGT---YQFICAGSE--FLYFY  240 (933)
T ss_pred             C--------------ceeEEEEecceeEEEEecCCC-c--ceeeeccCCccceeeecCCCC---ccEEEecCc--eEEEE
Confidence            4              221212224679999987432 1  233456677789999999853   334544443  68899


Q ss_pred             EeecCC
Q 036510          241 TVAREG  246 (288)
Q Consensus       241 ~~~~~~  246 (288)
                      +....+
T Consensus       241 ~sd~~~  246 (933)
T KOG2114|consen  241 DSDGRG  246 (933)
T ss_pred             cCCCcc
Confidence            876543

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=0.00073  Score=57.99  Aligned_cols=84  Identities=17%  Similarity=0.218  Sum_probs=66.9

Q ss_pred             eEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCc
Q 036510           48 LAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGN  127 (288)
Q Consensus        48 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~  127 (288)
                      ..-+.+|...|.+++|++.. ..++..++-+..|+|.|+++..   ....+..| ..+++++|..++ ..++.+|-..|.
T Consensus       186 sq~lp~~g~~IrdlafSp~~-~GLl~~asl~nkiki~dlet~~---~vssy~a~-~~~wSC~wDlde-~h~IYaGl~nG~  259 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFN-EGLLGLASLGNKIKIMDLETSC---VVSSYIAY-NQIWSCCWDLDE-RHVIYAGLQNGM  259 (463)
T ss_pred             hhcccccchhhhhhccCccc-cceeeeeccCceEEEEecccce---eeeheecc-CCceeeeeccCC-cceeEEeccCce
Confidence            44456788889999998753 3478899999999999998754   33445555 689999999886 567888999999


Q ss_pred             EEEEeecCCC
Q 036510          128 ISVFTARADG  137 (288)
Q Consensus       128 i~i~d~~~~~  137 (288)
                      |.+||+|...
T Consensus       260 VlvyD~R~~~  269 (463)
T KOG1645|consen  260 VLVYDMRQPE  269 (463)
T ss_pred             EEEEEccCCC
Confidence            9999999754

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.81  E-value=0.00062  Score=63.06  Aligned_cols=167  Identities=20%  Similarity=0.358  Sum_probs=106.6

Q ss_pred             CCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEE
Q 036510          101 HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCS  180 (288)
Q Consensus       101 h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s  180 (288)
                      |...-.+++|+|.  | ++|.|+ ...|.+-|.++-+   .....+-|+..|+.+.|.|....-.+..-.  ...-++++
T Consensus        14 ~~sN~~A~Dw~~~--G-LiAygs-hslV~VVDs~s~q---~iqsie~h~s~V~~VrWap~~~p~~llS~~--~~~lliAs   84 (1062)
T KOG1912|consen   14 SRSNRNAADWSPS--G-LIAYGS-HSLVSVVDSRSLQ---LIQSIELHQSAVTSVRWAPAPSPRDLLSPS--SSQLLIAS   84 (1062)
T ss_pred             CcccccccccCcc--c-eEEEec-CceEEEEehhhhh---hhhccccCccceeEEEeccCCCchhccCcc--ccceeEEe
Confidence            3444678899996  3 466664 3567788877543   334456688899999999875322211100  01135778


Q ss_pred             eecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccc-c
Q 036510          181 GGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFK-T  259 (288)
Q Consensus       181 ~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~-~  259 (288)
                      +...|.|.+||...+    ..+..+..|.++|..++|-|........|++-..-.+|.+|+....+..|..    ... .
T Consensus        85 aD~~GrIil~d~~~~----s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~----~ys~~  156 (1062)
T KOG1912|consen   85 ADISGRIILVDFVLA----SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY----DYSHE  156 (1062)
T ss_pred             ccccCcEEEEEehhh----hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc----ccCCc
Confidence            888899999998765    2333557788899999999865333457888888889999988765433321    122 2


Q ss_pred             CeEEEEeec-CCCEEEEEeCCCcEEE
Q 036510          260 PVYRVSWSL-TGNILAVADGNNNVTL  284 (288)
Q Consensus       260 ~i~~~~~sp-dg~~l~s~~~d~~v~~  284 (288)
                      ...+..+.| |-+.|..-+..|.|-+
T Consensus       157 iLs~f~~DPfd~rh~~~l~s~g~vl~  182 (1062)
T KOG1912|consen  157 ILSCFRVDPFDSRHFCVLGSKGFVLS  182 (1062)
T ss_pred             ceeeeeeCCCCcceEEEEccCceEEE
Confidence            344467777 5555665555565544

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.80  E-value=0.0079  Score=53.20  Aligned_cols=180  Identities=10%  Similarity=-0.010  Sum_probs=89.2

Q ss_pred             CEEEEeeCCCcEEEeecCCCCceEEeEEeecCC--Cce---eEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEe
Q 036510           70 SILASCSFDGTVIIWKEGNSNEWIKDHVFEDHK--SSV---NSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRI  144 (288)
Q Consensus        70 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~--~~v---~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~  144 (288)
                      ..++.++.++.+..+|.+++..... ..+....  ..+   ..+.-.|--.+..+..++.++.++.||.+++..  ....
T Consensus       191 ~~v~~~~~~g~v~ald~~tG~~~W~-~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~--~W~~  267 (377)
T TIGR03300       191 GGVLVGFAGGKLVALDLQTGQPLWE-QRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV--LWKR  267 (377)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeee-eccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE--EEee
Confidence            3567778888999989877652111 1111000  000   001001110123456677889999999876531  1111


Q ss_pred             eccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCc-ceEEEEecCCCCC
Q 036510          145 DQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTD-WVRDVAWAPNLGL  223 (288)
Q Consensus       145 ~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~-~V~~v~~sp~~~~  223 (288)
                      .  ... .....               . .+..++.++.|+.+..+|..++.    .+.....-.. ...+....     
T Consensus       268 ~--~~~-~~~p~---------------~-~~~~vyv~~~~G~l~~~d~~tG~----~~W~~~~~~~~~~ssp~i~-----  319 (377)
T TIGR03300       268 D--ASS-YQGPA---------------V-DDNRLYVTDADGVVVALDRRSGS----ELWKNDELKYRQLTAPAVV-----  319 (377)
T ss_pred             c--cCC-ccCce---------------E-eCCEEEEECCCCeEEEEECCCCc----EEEccccccCCccccCEEE-----
Confidence            1  000 00000               0 12456677789999999998763    2221111011 11111111     


Q ss_pred             CCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEe
Q 036510          224 PKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLW  285 (288)
Q Consensus       224 ~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w  285 (288)
                       +.+|..++.|+.|.++|....+..+   ....+...+..--.-.+ ..|+.++.||.|..+
T Consensus       320 -g~~l~~~~~~G~l~~~d~~tG~~~~---~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       320 -GGYLVVGDFEGYLHWLSREDGSFVA---RLKTDGSGIASPPVVVG-DGLLVQTRDGDLYAF  376 (377)
T ss_pred             -CCEEEEEeCCCEEEEEECCCCCEEE---EEEcCCCccccCCEEEC-CEEEEEeCCceEEEe
Confidence             3478889999999999976532211   11111212221111123 457788899998776

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.76  E-value=3.9e-05  Score=71.72  Aligned_cols=195  Identities=15%  Similarity=0.200  Sum_probs=117.4

Q ss_pred             eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC
Q 036510           46 QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD  125 (288)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d  125 (288)
                      +...++..|+...++++|+-.  .+.|+.|+..|.|+++++.++..   ......|..+|+-+.-+.+++ .+|.+.++.
T Consensus      1092 r~w~~frd~~~~fTc~afs~~--~~hL~vG~~~Geik~~nv~sG~~---e~s~ncH~SavT~vePs~dgs-~~Ltsss~S 1165 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGG--TNHLAVGSHAGEIKIFNVSSGSM---EESVNCHQSAVTLVEPSVDGS-TQLTSSSSS 1165 (1516)
T ss_pred             ccchhhhccccceeeEEeecC--CceEEeeeccceEEEEEccCccc---cccccccccccccccccCCcc-eeeeecccc
Confidence            345667788999999999854  67999999999999999987642   123456888999887666642 344555555


Q ss_pred             C-cEEEEeecCCCCeeeEEeeccCC-CCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeee
Q 036510          126 G-NISVFTARADGGWDTSRIDQAHP-VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFP  203 (288)
Q Consensus       126 ~-~i~i~d~~~~~~~~~~~~~~~~~-~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  203 (288)
                      . -..+|+.....  +.     .|. ..-.++.|+...              ..=+.|.......+||+.++....+...
T Consensus      1166 ~PlsaLW~~~s~~--~~-----~Hsf~ed~~vkFsn~~--------------q~r~~gt~~d~a~~YDvqT~~~l~tylt 1224 (1516)
T KOG1832|consen 1166 SPLSALWDASSTG--GP-----RHSFDEDKAVKFSNSL--------------QFRALGTEADDALLYDVQTCSPLQTYLT 1224 (1516)
T ss_pred             CchHHHhcccccc--Cc-----cccccccceeehhhhH--------------HHHHhcccccceEEEecccCcHHHHhcC
Confidence            5 45789876522  11     122 123456666543              2223344445678999987632111111


Q ss_pred             ccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeecccc--CeEEEEeecCCCEEEEEeCCCc
Q 036510          204 ALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKT--PVYRVSWSLTGNILAVADGNNN  281 (288)
Q Consensus       204 ~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~--~i~~~~~spdg~~l~s~~~d~~  281 (288)
                      ...+....=+++.|+|..    ++|.   .||  .+||++.+.      .++.|..  --..=.|+|.|..++.-+.   
T Consensus      1225 ~~~~~~y~~n~a~FsP~D----~LIl---ndG--vLWDvR~~~------aIh~FD~ft~~~~G~FHP~g~eVIINSE--- 1286 (1516)
T KOG1832|consen 1225 DTVTSSYSNNLAHFSPCD----TLIL---NDG--VLWDVRIPE------AIHRFDQFTDYGGGGFHPSGNEVIINSE--- 1286 (1516)
T ss_pred             cchhhhhhccccccCCCc----ceEe---eCc--eeeeeccHH------HHhhhhhheecccccccCCCceEEeech---
Confidence            111222234778999963    3332   344  379988642      1222211  1123479999999887764   


Q ss_pred             EEEeEc
Q 036510          282 VTLWEE  287 (288)
Q Consensus       282 v~~w~~  287 (288)
                        |||+
T Consensus      1287 --IwD~ 1290 (1516)
T KOG1832|consen 1287 --IWDM 1290 (1516)
T ss_pred             --hhhh
Confidence              6775

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.63  E-value=0.011  Score=57.66  Aligned_cols=199  Identities=17%  Similarity=0.348  Sum_probs=109.5

Q ss_pred             ccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEee-
Q 036510           55 KGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTA-  133 (288)
Q Consensus        55 ~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~-  133 (288)
                      .+.|.++.|..+  ..-++.+..+|.|.+-|..+.. +   .....-.+.|.+++|+||+  .+++-.+..+++.+.+- 
T Consensus        68 d~~i~s~~fl~d--~~~i~v~~~~G~iilvd~et~~-~---eivg~vd~GI~aaswS~De--e~l~liT~~~tll~mT~~  139 (1265)
T KOG1920|consen   68 DDEIVSVQFLAD--TNSICVITALGDIILVDPETLE-L---EIVGNVDNGISAASWSPDE--ELLALITGRQTLLFMTKD  139 (1265)
T ss_pred             CcceEEEEEecc--cceEEEEecCCcEEEEcccccc-e---eeeeeccCceEEEeecCCC--cEEEEEeCCcEEEEEecc
Confidence            367888888654  5667777888999988776532 2   2223345689999999995  44444444566654322 


Q ss_pred             -c--CCCC---------------eee--EEee--cc------------------CCCCeeEEEeCCCCCCCceecccccC
Q 036510          134 -R--ADGG---------------WDT--SRID--QA------------------HPVGVTSVSWAPSTAPGALVGSGFLD  173 (288)
Q Consensus       134 -~--~~~~---------------~~~--~~~~--~~------------------~~~~v~~i~~~p~~~~~~~~~~~~~~  173 (288)
                       .  ....               |..  .+..  .+                  -.+.-++|.|.-++            
T Consensus       140 f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg------------  207 (1265)
T KOG1920|consen  140 FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDG------------  207 (1265)
T ss_pred             ccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCC------------
Confidence             1  0000               100  0000  00                  00112235554443            


Q ss_pred             CCceeEEe----ecC-CcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEE---eCCCcEEEEEeecC
Q 036510          174 PVQKLCSG----GCD-NTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASA---SEDGKVIIWTVARE  245 (288)
Q Consensus       174 ~~~~l~s~----~~d-~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~---s~D~~i~iw~~~~~  245 (288)
                        .++++.    ..+ +.|++||-+...   .....  -...--.+++|-|.    +..+++-   .+|+.|.++.-+- 
T Consensus       208 --~~fAVs~~~~~~~~RkirV~drEg~L---ns~se--~~~~l~~~LsWkPs----gs~iA~iq~~~sd~~IvffErNG-  275 (1265)
T KOG1920|consen  208 --EYFAVSFVESETGTRKIRVYDREGAL---NSTSE--PVEGLQHSLSWKPS----GSLIAAIQCKTSDSDIVFFERNG-  275 (1265)
T ss_pred             --cEEEEEEEeccCCceeEEEecccchh---hcccC--cccccccceeecCC----CCeEeeeeecCCCCcEEEEecCC-
Confidence              455542    234 889999976321   11110  01111257899996    3567765   3466899986431 


Q ss_pred             CCcccceEeecc---ccCeEEEEeecCCCEEEE---EeCCCcEEEeEc
Q 036510          246 GDQWEGKVLHDF---KTPVYRVSWSLTGNILAV---ADGNNNVTLWEE  287 (288)
Q Consensus       246 ~~~~~~~~~~~~---~~~i~~~~~spdg~~l~s---~~~d~~v~~w~~  287 (288)
                        ...+...-.+   ..++..++|+.++..||+   ......|+||-+
T Consensus       276 --L~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~  321 (1265)
T KOG1920|consen  276 --LRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTT  321 (1265)
T ss_pred             --ccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEe
Confidence              1111111111   234889999999999998   445556999964

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.61  E-value=0.028  Score=46.51  Aligned_cols=186  Identities=19%  Similarity=0.189  Sum_probs=100.3

Q ss_pred             eEEEEEc-CCCCEEEEeeCCCcEEEEEeCCCCceeeEEEe--c-cccCeEEEEecCCCCCCEEEEeeCC--------CcE
Q 036510           14 VHDVAMD-YYGKRLATASSDYSIKIIGVGNNTSQHLAKLS--G-HKGAVWEVAWAHPKFGSILASCSFD--------GTV   81 (288)
Q Consensus        14 v~~~~~s-~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~--~-h~~~v~~~~~~~~~~~~~l~s~s~d--------~~v   81 (288)
                      ..++.+. ++|++++ +..++ +.++|...+..+.+....  . .....+.+++.++  |++.++....        |.+
T Consensus        42 ~~G~~~~~~~g~l~v-~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~--G~ly~t~~~~~~~~~~~~g~v  117 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYV-ADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPD--GNLYVTDSGGGGASGIDPGSV  117 (246)
T ss_dssp             EEEEEEECTTSEEEE-EETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TT--S-EEEEEECCBCTTCGGSEEE
T ss_pred             CceEEEEccCCEEEE-EEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCC--CCEEEEecCCCccccccccce
Confidence            4566777 6765554 44444 455576554444454442  1 3456788998764  8888876654        345


Q ss_pred             EEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCC-eeeEEee-ccCC--CCeeEEEe
Q 036510           82 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGG-WDTSRID-QAHP--VGVTSVSW  157 (288)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~-~~~~~~~-~~~~--~~v~~i~~  157 (288)
                      ..++..  ...   ..+.......+.++|+|++ ..++++-+..+.|..|++..... +...+.. ....  .....+..
T Consensus       118 ~~~~~~--~~~---~~~~~~~~~pNGi~~s~dg-~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~v  191 (246)
T PF08450_consen  118 YRIDPD--GKV---TVVADGLGFPNGIAFSPDG-KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAV  191 (246)
T ss_dssp             EEEETT--SEE---EEEEEEESSEEEEEEETTS-SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEE
T ss_pred             EEECCC--CeE---EEEecCcccccceEECCcc-hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceE
Confidence            445443  221   1122223457899999984 34455667888898898865432 3222211 1111  11334555


Q ss_pred             CCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEec-CCCCCCCcEEEEE
Q 036510          158 APSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWA-PNLGLPKSTIASA  231 (288)
Q Consensus       158 ~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~s-p~~~~~~~~l~s~  231 (288)
                      .+++              ++.++.-..+.|.++|.. +.    .+..+......+.+++|. |+.   ..+++|.
T Consensus       192 D~~G--------------~l~va~~~~~~I~~~~p~-G~----~~~~i~~p~~~~t~~~fgg~~~---~~L~vTt  244 (246)
T PF08450_consen  192 DSDG--------------NLWVADWGGGRIVVFDPD-GK----LLREIELPVPRPTNCAFGGPDG---KTLYVTT  244 (246)
T ss_dssp             BTTS---------------EEEEEETTTEEEEEETT-SC----EEEEEE-SSSSEEEEEEESTTS---SEEEEEE
T ss_pred             cCCC--------------CEEEEEcCCCEEEEECCC-cc----EEEEEcCCCCCEEEEEEECCCC---CEEEEEe
Confidence            5543              556665567788888865 42    222333233367888984 442   3455554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.53  E-value=0.081  Score=51.94  Aligned_cols=204  Identities=17%  Similarity=0.312  Sum_probs=114.7

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecC---
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEG---   87 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~---   87 (288)
                      .+.|.++.|-.++..++-+..+|.|-+-|......+.+..   =...|.+.+|+++  +++++-...++++.+-.-.   
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~---vd~GI~aaswS~D--ee~l~liT~~~tll~mT~~f~~  142 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGN---VDNGISAASWSPD--EELLALITGRQTLLFMTKDFEP  142 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeee---ccCceEEEeecCC--CcEEEEEeCCcEEEEEeccccc
Confidence            3688899998888888888889998887764333333333   3567999999976  7888888888888765320   


Q ss_pred             -CCC---------------ceEE-eEEeec------------CC---------CceeEEEeccCCCCeEEEE-----EeC
Q 036510           88 -NSN---------------EWIK-DHVFED------------HK---------SSVNSIDWAPHELGLCLAC-----GSS  124 (288)
Q Consensus        88 -~~~---------------~~~~-~~~~~~------------h~---------~~v~~l~~~p~~~~~~l~s-----g~~  124 (288)
                       ...               .|.. -..+.+            +.         +.=.++.|-.|  +.++|+     ...
T Consensus       143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgD--g~~fAVs~~~~~~~  220 (1265)
T KOG1920|consen  143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGD--GEYFAVSFVESETG  220 (1265)
T ss_pred             hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccC--CcEEEEEEEeccCC
Confidence             000               0100 001110            00         11134777665  666665     333


Q ss_pred             CCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEe---ecCCcEEEEEEeCCceeeee
Q 036510          125 DGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSG---GCDNTVKVWKLYNGIWKMDC  201 (288)
Q Consensus       125 d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~---~~d~~i~iwd~~~~~~~~~~  201 (288)
                      .++|++||-.  +.++...  +.-...-.+++|-|.+              ..+++-   +.|+.|.++.- +|...-+.
T Consensus       221 ~RkirV~drE--g~Lns~s--e~~~~l~~~LsWkPsg--------------s~iA~iq~~~sd~~IvffEr-NGL~hg~f  281 (1265)
T KOG1920|consen  221 TRKIRVYDRE--GALNSTS--EPVEGLQHSLSWKPSG--------------SLIAAIQCKTSDSDIVFFER-NGLRHGEF  281 (1265)
T ss_pred             ceeEEEeccc--chhhccc--CcccccccceeecCCC--------------CeEeeeeecCCCCcEEEEec-CCcccccc
Confidence            3799999865  2222211  1112234589999976              333332   33556877763 44221111


Q ss_pred             eeccccCCcceEEEEecCCCCCCCcEEEE---EeCCCcEEEEEeec
Q 036510          202 FPALQMHTDWVRDVAWAPNLGLPKSTIAS---ASEDGKVIIWTVAR  244 (288)
Q Consensus       202 ~~~~~~h~~~V~~v~~sp~~~~~~~~l~s---~s~D~~i~iw~~~~  244 (288)
                      .-.+......|..++|+.++    ..||.   ......|++|-...
T Consensus       282 ~l~~p~de~~ve~L~Wns~s----diLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  282 VLPFPLDEKEVEELAWNSNS----DILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             ccCCcccccchheeeecCCC----CceeeeecccccceEEEEEecC
Confidence            00111112238999999985    34544   34444599997653

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.48  E-value=0.06  Score=47.91  Aligned_cols=258  Identities=15%  Similarity=0.163  Sum_probs=124.0

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCcEEEEEeCC----C--------------------Cc-----------------eeeEEE
Q 036510           13 TVHDVAMDYYGKRLATASSDYSIKIIGVGN----N--------------------TS-----------------QHLAKL   51 (288)
Q Consensus        13 ~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~----~--------------------~~-----------------~~~~~~   51 (288)
                      .|..++|.++..-|+.|-..|.|-||.+..    +                    ..                 ....-+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            578889998877888899999998886521    0                    00                 011223


Q ss_pred             eccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeec------CCCceeEEEecc---CCC---CeEE
Q 036510           52 SGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFED------HKSSVNSIDWAP---HEL---GLCL  119 (288)
Q Consensus        52 ~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~------h~~~v~~l~~~p---~~~---~~~l  119 (288)
                      ....++|.+++-|.   =..++.|..+|.+.|.|++.. ..+....+..      ....++++.|..   .++   ..++
T Consensus        83 ~~~~g~vtal~~S~---iGFvaigy~~G~l~viD~RGP-avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L  158 (395)
T PF08596_consen   83 DAKQGPVTALKNSD---IGFVAIGYESGSLVVIDLRGP-AVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL  158 (395)
T ss_dssp             ---S-SEEEEEE-B---TSEEEEEETTSEEEEEETTTT-EEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred             eccCCcEeEEecCC---CcEEEEEecCCcEEEEECCCC-eEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence            34578899999763   458899999999999999753 2222222222      234578888863   222   2578


Q ss_pred             EEEeCCCcEEEEeec--CCCCeeeEEe--eccCCCCeeEEE-eCCCCCCCceecc----cccC---CCceeEEeecCCcE
Q 036510          120 ACGSSDGNISVFTAR--ADGGWDTSRI--DQAHPVGVTSVS-WAPSTAPGALVGS----GFLD---PVQKLCSGGCDNTV  187 (288)
Q Consensus       120 ~sg~~d~~i~i~d~~--~~~~~~~~~~--~~~~~~~v~~i~-~~p~~~~~~~~~~----~~~~---~~~~l~s~~~d~~i  187 (288)
                      .+|...|.+.+|.+.  .++.+.....  ...+...+..|. ++.+.........    ++..   ...+++.++ +..+
T Consensus       159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e~~i  237 (395)
T PF08596_consen  159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-ESDI  237 (395)
T ss_dssp             EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEE
T ss_pred             EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-ccce
Confidence            899999999999875  2233332111  123555666654 4333322111110    1111   112344433 6779


Q ss_pred             EEEEEeCCceeeeeeeccccCCcceEEEEecCCC-CCCCcEEEEEeCCCcEEEEEeecCCCcccceEeecc-ccCeEEEE
Q 036510          188 KVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNL-GLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDF-KTPVYRVS  265 (288)
Q Consensus       188 ~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~-~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~-~~~i~~~~  265 (288)
                      |++...+..    ..+..-...-.+..+.+-+-. ...+..|++-..||.|+++.+=.-++.......... ...+....
T Consensus       238 rv~~~~~~k----~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss  313 (395)
T PF08596_consen  238 RVFKPPKSK----GAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS  313 (395)
T ss_dssp             EEE-TT-------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred             EEEeCCCCc----ccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence            998765432    111111111123334443200 001356888889999999986321110000000000 11234577


Q ss_pred             eecCCCEEEEEeCC
Q 036510          266 WSLTGNILAVADGN  279 (288)
Q Consensus       266 ~spdg~~l~s~~~d  279 (288)
                      ++++|..++..+..
T Consensus       314 is~~Gdi~~~~gps  327 (395)
T PF08596_consen  314 ISRNGDIFYWTGPS  327 (395)
T ss_dssp             E-TTS-EEEE-SSS
T ss_pred             ECCCCCEEEEeCcc
Confidence            89999988877543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>smart00320 WD40 WD40 repeats

Probab=97.48  E-value=0.00051  Score=37.76  Aligned_cols=38  Identities=45%  Similarity=0.712  Sum_probs=32.0

Q ss_pred             eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510           46 QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      .....+..|...|.++.|.+.  +..+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPD--GKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCC--CCEEEEecCCCeEEEcC
Confidence            345667789999999999764  58999999999999995

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>smart00320 WD40 WD40 repeats

Probab=97.47  E-value=0.00017  Score=39.88  Aligned_cols=35  Identities=43%  Similarity=0.474  Sum_probs=31.0

Q ss_pred             ccccccccceEEEEEcCCCCEEEEeeCCCcEEEEE
Q 036510            5 KIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIG   39 (288)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd   39 (288)
                      ..+.+|...|.+++|.++++++++++.|+.+++|+
T Consensus         6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34457899999999999999999999999999985

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.42  E-value=0.022  Score=40.55  Aligned_cols=102  Identities=22%  Similarity=0.320  Sum_probs=65.3

Q ss_pred             eEEEEEcC---CC-CEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC
Q 036510           14 VHDVAMDY---YG-KRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS   89 (288)
Q Consensus        14 v~~~~~s~---~g-~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~   89 (288)
                      |.++++.+   +| +.|+.||.|..||+|+-+    +.+..+.. ++.|..++-..   +..|+.+.++|+|-+|+.. .
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~----e~~~Ei~e-~~~v~~L~~~~---~~~F~Y~l~NGTVGvY~~~-~   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD----EIVAEITE-TDKVTSLCSLG---GGRFAYALANGTVGVYDRS-Q   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC----cEEEEEec-ccceEEEEEcC---CCEEEEEecCCEEEEEeCc-c
Confidence            56676543   44 679999999999999743    34555554 45677787653   4789999999999999763 3


Q ss_pred             CceEEeEEeecCCCceeEEEec-cCCCC-eEEEEEeCCCcEE
Q 036510           90 NEWIKDHVFEDHKSSVNSIDWA-PHELG-LCLACGSSDGNIS  129 (288)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~l~~~-p~~~~-~~l~sg~~d~~i~  129 (288)
                      ..|.    .+. +..+.++.+. .+..+ .-|++|-.+|.|.
T Consensus        73 RlWR----iKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   73 RLWR----IKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeee----ecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            3332    221 2346666543 22222 2477776666653

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.39  E-value=0.054  Score=44.28  Aligned_cols=178  Identities=16%  Similarity=0.192  Sum_probs=91.7

Q ss_pred             CCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccC
Q 036510           69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAH  148 (288)
Q Consensus        69 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~  148 (288)
                      +..++.++.++.+..||..+++.   ...+.. ...+.......   +..++.+..++.|+.+|.+++..  ........
T Consensus        36 ~~~v~~~~~~~~l~~~d~~tG~~---~W~~~~-~~~~~~~~~~~---~~~v~v~~~~~~l~~~d~~tG~~--~W~~~~~~  106 (238)
T PF13360_consen   36 GGRVYVASGDGNLYALDAKTGKV---LWRFDL-PGPISGAPVVD---GGRVYVGTSDGSLYALDAKTGKV--LWSIYLTS  106 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSEE---EEEEEC-SSCGGSGEEEE---TTEEEEEETTSEEEEEETTTSCE--EEEEEE-S
T ss_pred             CCEEEEEcCCCEEEEEECCCCCE---EEEeec-cccccceeeec---ccccccccceeeeEecccCCcce--eeeecccc
Confidence            56777778999999999877752   222322 12211111111   22345566788899999776542  22211111


Q ss_pred             -CC-C---eeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcc-----------e
Q 036510          149 -PV-G---VTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDW-----------V  212 (288)
Q Consensus       149 -~~-~---v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~-----------V  212 (288)
                       +. .   .......                +..++.+..++.|..+|+++|.    .+.........           .
T Consensus       107 ~~~~~~~~~~~~~~~----------------~~~~~~~~~~g~l~~~d~~tG~----~~w~~~~~~~~~~~~~~~~~~~~  166 (238)
T PF13360_consen  107 SPPAGVRSSSSPAVD----------------GDRLYVGTSSGKLVALDPKTGK----LLWKYPVGEPRGSSPISSFSDIN  166 (238)
T ss_dssp             SCTCSTB--SEEEEE----------------TTEEEEEETCSEEEEEETTTTE----EEEEEESSTT-SS--EEEETTEE
T ss_pred             ccccccccccCceEe----------------cCEEEEEeccCcEEEEecCCCc----EEEEeecCCCCCCcceeeecccc
Confidence             00 0   0111111                2556777778899999988873    22222111111           1


Q ss_pred             EEEEecCCCCCCCcEEEEEeCCCc-EEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEcC
Q 036510          213 RDVAWAPNLGLPKSTIASASEDGK-VIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA  288 (288)
Q Consensus       213 ~~v~~sp~~~~~~~~l~s~s~D~~-i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~~  288 (288)
                      ..+.+. +     ..+..++.++. +.+ |+......++    ..... +. ....+++..+++++.++.|..||.+
T Consensus       167 ~~~~~~-~-----~~v~~~~~~g~~~~~-d~~tg~~~w~----~~~~~-~~-~~~~~~~~~l~~~~~~~~l~~~d~~  230 (238)
T PF13360_consen  167 GSPVIS-D-----GRVYVSSGDGRVVAV-DLATGEKLWS----KPISG-IY-SLPSVDGGTLYVTSSDGRLYALDLK  230 (238)
T ss_dssp             EEEECC-T-----TEEEEECCTSSEEEE-ETTTTEEEEE----ECSS--EC-ECEECCCTEEEEEETTTEEEEEETT
T ss_pred             cceEEE-C-----CEEEEEcCCCeEEEE-ECCCCCEEEE----ecCCC-cc-CCceeeCCEEEEEeCCCEEEEEECC
Confidence            222222 1     25666666664 444 7654321111    01111 11 1255788888888899999999953

...

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.35  E-value=0.064  Score=44.36  Aligned_cols=225  Identities=10%  Similarity=0.067  Sum_probs=121.7

Q ss_pred             EEEEcC-CCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEE
Q 036510           16 DVAMDY-YGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIK   94 (288)
Q Consensus        16 ~~~~s~-~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~   94 (288)
                      +..|.+ +|+++++--..+.|.-|+.....   ...+....  ...+.+..+ ++. |+.+..++. .++|..++. ...
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~---~~~~~~~~--~~G~~~~~~-~g~-l~v~~~~~~-~~~d~~~g~-~~~   74 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGE---VEVIDLPG--PNGMAFDRP-DGR-LYVADSGGI-AVVDPDTGK-VTV   74 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTE---EEEEESSS--EEEEEEECT-TSE-EEEEETTCE-EEEETTTTE-EEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCe---EEEEecCC--CceEEEEcc-CCE-EEEEEcCce-EEEecCCCc-EEE
Confidence            456787 67777777678888888765432   22222222  567777633 344 444455444 455876653 222


Q ss_pred             eEEee--c-CCCceeEEEeccCCCCeEEEEEeCC--------CcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCC
Q 036510           95 DHVFE--D-HKSSVNSIDWAPHELGLCLACGSSD--------GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAP  163 (288)
Q Consensus        95 ~~~~~--~-h~~~v~~l~~~p~~~~~~l~sg~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~  163 (288)
                      .....  . .....+.+++.|+  +.+.++....        +.|..++..  .....  .... -....-|.|+|++. 
T Consensus        75 ~~~~~~~~~~~~~~ND~~vd~~--G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~--~~~~-~~~pNGi~~s~dg~-  146 (246)
T PF08450_consen   75 LADLPDGGVPFNRPNDVAVDPD--GNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTV--VADG-LGFPNGIAFSPDGK-  146 (246)
T ss_dssp             EEEEETTCSCTEEEEEEEE-TT--S-EEEEEECCBCTTCGGSEEEEEEETT--SEEEE--EEEE-ESSEEEEEEETTSS-
T ss_pred             EeeccCCCcccCCCceEEEcCC--CCEEEEecCCCccccccccceEEECCC--CeEEE--EecC-cccccceEECCcch-
Confidence            22221  1 3346778888887  5555544332        234444433  22211  1111 12356788998872 


Q ss_pred             CceecccccCCCceeEEeecCCcEEEEEEeCCce---eeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEE
Q 036510          164 GALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIW---KMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIW  240 (288)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw  240 (288)
                                  .++++-+..+.|..+|+.....   ..+....+..-......+++..+    +++.++.-..+.|.++
T Consensus       147 ------------~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~----G~l~va~~~~~~I~~~  210 (246)
T PF08450_consen  147 ------------TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSD----GNLWVADWGGGRIVVF  210 (246)
T ss_dssp             ------------EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTT----S-EEEEEETTTEEEEE
T ss_pred             ------------heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCC----CCEEEEEcCCCEEEEE
Confidence                        3455777788898899864321   11222222322233567888776    4667777778899999


Q ss_pred             EeecCCCcccceEeeccccCeEEEEee-cCCCEEEEEe
Q 036510          241 TVAREGDQWEGKVLHDFKTPVYRVSWS-LTGNILAVAD  277 (288)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~i~~~~~s-pdg~~l~s~~  277 (288)
                      +.+-  ..  ...+.-....+++++|. |+.+.|.+.+
T Consensus       211 ~p~G--~~--~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  211 DPDG--KL--LREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             ETTS--CE--EEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             CCCc--cE--EEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            8651  11  12222223478999995 7777666554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.34  E-value=0.0067  Score=57.14  Aligned_cols=118  Identities=20%  Similarity=0.251  Sum_probs=80.9

Q ss_pred             cccccccceEE-EEEcCCCCEEEEeeC----CCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCc
Q 036510            6 IETGHEDTVHD-VAMDYYGKRLATASS----DYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGT   80 (288)
Q Consensus         6 ~~~~h~~~v~~-~~~s~~g~~l~s~~~----d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~   80 (288)
                      +...-.++|.. ++|.|...+++.++-    .|+|.||--.++. ..-.++.-|   +.++||.|.  .-+|+.|..-|.
T Consensus         9 IE~~Dsdavsti~SWHPsePlfAVA~fS~er~GSVtIfadtGEP-qr~Vt~P~h---atSLCWHpe--~~vLa~gwe~g~   82 (1416)
T KOG3617|consen    9 IEFLDSDAVSTISSWHPSEPLFAVASFSPERGGSVTIFADTGEP-QRDVTYPVH---ATSLCWHPE--EFVLAQGWEMGV   82 (1416)
T ss_pred             eecccccccccccccCCCCceeEEEEecCCCCceEEEEecCCCC-Cccccccee---hhhhccChH--HHHHhhccccce
Confidence            33334455555 468898888888774    4788888543332 122222333   456999542  567889999999


Q ss_pred             EEEeecCCCCceEEeEE-eecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecC
Q 036510           81 VIIWKEGNSNEWIKDHV-FEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA  135 (288)
Q Consensus        81 v~iwd~~~~~~~~~~~~-~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~  135 (288)
                      +.+|...+..    .++ ...|..+|..+.|+|+  |..+.++..-|.+.+|....
T Consensus        83 ~~v~~~~~~e----~htv~~th~a~i~~l~wS~~--G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   83 SDVQKTNTTE----THTVVETHPAPIQGLDWSHD--GTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             eEEEecCCce----eeeeccCCCCCceeEEecCC--CCeEEEcCCCceeEEEEeee
Confidence            9999764432    233 3468999999999998  67899999999999997653

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.28  E-value=0.038  Score=52.20  Aligned_cols=190  Identities=12%  Similarity=0.085  Sum_probs=106.3

Q ss_pred             CCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCc-eeEEEeccCCCCeEEEEEeCCC-----cEEEEeecCCCCeeeE
Q 036510           69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSS-VNSIDWAPHELGLCLACGSSDG-----NISVFTARADGGWDTS  142 (288)
Q Consensus        69 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~-v~~l~~~p~~~~~~l~sg~~d~-----~i~i~d~~~~~~~~~~  142 (288)
                      +..++.|+++|.|-+.+..-.    ..+.+..+... |..+ +.-+. ..+|++-+.|+     .|++|++..-..-..+
T Consensus        35 ~~~vvigt~~G~V~~Ln~s~~----~~~~fqa~~~siv~~L-~~~~~-~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   35 TGSVVIGTADGRVVILNSSFQ----LIRGFQAYEQSIVQFL-YILNK-QNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             CceEEEeeccccEEEecccce----eeehheecchhhhhHh-hcccC-ceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            779999999999988764321    22445555555 3333 23332 23444444443     5899998653211101


Q ss_pred             Eee-----cc-----CCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeC-CceeeeeeeccccCCcc
Q 036510          143 RID-----QA-----HPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYN-GIWKMDCFPALQMHTDW  211 (288)
Q Consensus       143 ~~~-----~~-----~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~h~~~  211 (288)
                      ...     -.     .+.++.+++.+.+              .+.+|.|=.+|.|.++.=.- ..+..+.... ....++
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~--------------l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~-~~~~~p  173 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSED--------------LKTIVCGFTNGLVICYKGDILRDRGSRQDYS-HRGKEP  173 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEcc--------------ccEEEEEecCcEEEEEcCcchhccccceeee-ccCCCC
Confidence            111     11     1233444444333              36788898999998874211 0001111111 223557


Q ss_pred             eEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          212 VRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       212 V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      |+.+.|..+.    +.++-+..-..|.+|.++.+. + ....+..++.++.+..|++....|++++ +.-+.+|+
T Consensus       174 ITgL~~~~d~----~s~lFv~Tt~~V~~y~l~gr~-p-~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~  241 (933)
T KOG2114|consen  174 ITGLALRSDG----KSVLFVATTEQVMLYSLSGRT-P-SLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYD  241 (933)
T ss_pred             ceeeEEecCC----ceeEEEEecceeEEEEecCCC-c-ceeeeccCCccceeeecCCCCccEEEec-CceEEEEc
Confidence            9999998774    332334445579999988432 2 2233455667889999998877666664 35566665

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.16  E-value=0.0031  Score=57.89  Aligned_cols=103  Identities=18%  Similarity=0.198  Sum_probs=71.2

Q ss_pred             ceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEe-
Q 036510          176 QKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVL-  254 (288)
Q Consensus       176 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~-  254 (288)
                      .+++.|+.-|.+.+++-..+. .+  .....+-...+.....|++    ..++|+|+..+.|.++-++... +.....+ 
T Consensus        46 ~~l~~GsS~G~lyl~~R~~~~-~~--~~~~~~~~~~~~~~~vs~~----e~lvAagt~~g~V~v~ql~~~~-p~~~~~~t  117 (726)
T KOG3621|consen   46 EYLAMGSSAGSVYLYNRHTGE-MR--KLKNEGATGITCVRSVSSV----EYLVAAGTASGRVSVFQLNKEL-PRDLDYVT  117 (726)
T ss_pred             ceEEEecccceEEEEecCchh-hh--cccccCccceEEEEEecch----hHhhhhhcCCceEEeehhhccC-CCcceeec
Confidence            678999999999999876552 11  1122233333555566775    3578888888899998887643 2222222 


Q ss_pred             ---eccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          255 ---HDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       255 ---~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                         +.|+..|++++|++||..+.+|++-|+|.+-.
T Consensus       118 ~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~  152 (726)
T KOG3621|consen  118 PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTE  152 (726)
T ss_pred             cccccCCceEEEEEecccccEEeecCCCceEEEEE
Confidence               22456899999999999999999999987643

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.97  E-value=0.06  Score=38.33  Aligned_cols=90  Identities=23%  Similarity=0.260  Sum_probs=57.3

Q ss_pred             ceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEee
Q 036510          176 QKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLH  255 (288)
Q Consensus       176 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~  255 (288)
                      +.|+.|+.|..||+|+-.+      .+.++.. .+.|.++.-...     .+|+.+..+|+|-+|+-...  .|..+.  
T Consensus        16 ~eLlvGs~D~~IRvf~~~e------~~~Ei~e-~~~v~~L~~~~~-----~~F~Y~l~NGTVGvY~~~~R--lWRiKS--   79 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKGDE------IVAEITE-TDKVTSLCSLGG-----GRFAYALANGTVGVYDRSQR--LWRIKS--   79 (111)
T ss_pred             ceEEEecCCcEEEEEeCCc------EEEEEec-ccceEEEEEcCC-----CEEEEEecCCEEEEEeCcce--eeeecc--
Confidence            6799999999999998543      2333332 234666665543     57999999999999975432  232221  


Q ss_pred             ccccCeEEEEee---cCC-CEEEEEeCCCcEE
Q 036510          256 DFKTPVYRVSWS---LTG-NILAVADGNNNVT  283 (288)
Q Consensus       256 ~~~~~i~~~~~s---pdg-~~l~s~~~d~~v~  283 (288)
                        +..++++.+.   -|| ..|++|=++|.|-
T Consensus        80 --K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   80 --KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             --CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence              2234454433   334 3688998888874

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.94  E-value=0.052  Score=52.02  Aligned_cols=147  Identities=13%  Similarity=0.091  Sum_probs=84.4

Q ss_pred             eEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCc
Q 036510          117 LCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGI  196 (288)
Q Consensus       117 ~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  196 (288)
                      .+|......+.|+-.|+.++.....+....  ..+|.  .+.|+..-+      .+.+.+ ...|-.++.+..||.|-..
T Consensus       495 mil~~~~~~~~ly~mDLe~GKVV~eW~~~~--~~~v~--~~~p~~K~a------qlt~e~-tflGls~n~lfriDpR~~~  563 (794)
T PF08553_consen  495 MILLDPNNPNKLYKMDLERGKVVEEWKVHD--DIPVV--DIAPDSKFA------QLTNEQ-TFLGLSDNSLFRIDPRLSG  563 (794)
T ss_pred             eEeecCCCCCceEEEecCCCcEEEEeecCC--Cccee--Eeccccccc------ccCCCc-eEEEECCCceEEeccCCCC
Confidence            344444556777777877665433333211  12233  344543211      112222 3345567889999998642


Q ss_pred             eeeeeeecccc----CCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCE
Q 036510          197 WKMDCFPALQM----HTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNI  272 (288)
Q Consensus       197 ~~~~~~~~~~~----h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~  272 (288)
                      .  +++.. ..    ....-.|++-..+     .+||.||.+|.||+||--.   ...++.+-+.+.||..+.-+.||++
T Consensus       564 ~--k~v~~-~~k~Y~~~~~Fs~~aTt~~-----G~iavgs~~G~IRLyd~~g---~~AKT~lp~lG~pI~~iDvt~DGkw  632 (794)
T PF08553_consen  564 N--KLVDS-QSKQYSSKNNFSCFATTED-----GYIAVGSNKGDIRLYDRLG---KRAKTALPGLGDPIIGIDVTADGKW  632 (794)
T ss_pred             C--ceeec-cccccccCCCceEEEecCC-----ceEEEEeCCCcEEeecccc---hhhhhcCCCCCCCeeEEEecCCCcE
Confidence            1  22211 11    1222455554443     4899999999999998431   2234455567899999999999999


Q ss_pred             EEEEeCCCcEEEeE
Q 036510          273 LAVADGNNNVTLWE  286 (288)
Q Consensus       273 l~s~~~d~~v~~w~  286 (288)
                      ++..+. .-+-|.+
T Consensus       633 ilaTc~-tyLlLi~  645 (794)
T PF08553_consen  633 ILATCK-TYLLLID  645 (794)
T ss_pred             EEEeec-ceEEEEE
Confidence            876653 4454554

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.93  E-value=0.21  Score=42.47  Aligned_cols=160  Identities=13%  Similarity=0.144  Sum_probs=87.2

Q ss_pred             EEEcCCCCEEEEeeCC-----CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEe----------------
Q 036510           17 VAMDYYGKRLATASSD-----YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASC----------------   75 (288)
Q Consensus        17 ~~~s~~g~~l~s~~~d-----~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----------------   75 (288)
                      -.||+||++|.+.=+|     |.|-+||.. ...+.+..+..|--.-..+.+.++  ++.|+.+                
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pD--G~tLvVANGGI~Thpd~GR~kLN  132 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPD--GETLVVANGGIETHPDSGRAKLN  132 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCC--CCEEEEEcCCCccCcccCceecC
Confidence            4699999999886544     779999986 345667777766655566777654  6555543                


Q ss_pred             --eCCCcEEEeecCCCCceEEeEEe--ecCCCceeEEEeccCCCCeEEEEEeCCCcE-----EEEeecCCCCeeeEEee-
Q 036510           76 --SFDGTVIIWKEGNSNEWIKDHVF--EDHKSSVNSIDWAPHELGLCLACGSSDGNI-----SVFTARADGGWDTSRID-  145 (288)
Q Consensus        76 --s~d~~v~iwd~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i-----~i~d~~~~~~~~~~~~~-  145 (288)
                        .++.++..-|..++. ......+  ..|+..|.-+++.++  +.++..+-..+--     -+.-.+.++........ 
T Consensus       133 l~tM~psL~~ld~~sG~-ll~q~~Lp~~~~~lSiRHLa~~~~--G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~  209 (305)
T PF07433_consen  133 LDTMQPSLVYLDARSGA-LLEQVELPPDLHQLSIRHLAVDGD--GTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPE  209 (305)
T ss_pred             hhhcCCceEEEecCCCc-eeeeeecCccccccceeeEEecCC--CcEEEEEecCCCCCccCCeEEEEcCCCcceeccCCh
Confidence              233333333444433 2222334  347777888888876  4433333222210     01111111111111100 


Q ss_pred             ---ccCCCCeeEEEeCCCCCCCceecccccCCCcee-EEeecCCcEEEEEEeCCc
Q 036510          146 ---QAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKL-CSGGCDNTVKVWKLYNGI  196 (288)
Q Consensus       146 ---~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~  196 (288)
                         .....-+-+|++++++              ..+ +|+=.-+.+.+||..++.
T Consensus       210 ~~~~~l~~Y~gSIa~~~~g--------------~~ia~tsPrGg~~~~~d~~tg~  250 (305)
T PF07433_consen  210 EQWRRLNGYIGSIAADRDG--------------RLIAVTSPRGGRVAVWDAATGR  250 (305)
T ss_pred             HHHHhhCCceEEEEEeCCC--------------CEEEEECCCCCEEEEEECCCCC
Confidence               1122346677777765              344 566566778999998873

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.89  E-value=0.016  Score=53.52  Aligned_cols=121  Identities=20%  Similarity=0.237  Sum_probs=81.6

Q ss_pred             cccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC
Q 036510           10 HEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS   89 (288)
Q Consensus        10 h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~   89 (288)
                      |...|.=-+++..+++|+-|+.-|.+.+|+...+. -.+....+-++.+..+..+.  +..++|.|+..|.|.++-+...
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~-~~~~~~~~~~~~~~~~~vs~--~e~lvAagt~~g~V~v~ql~~~  108 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGE-MRKLKNEGATGITCVRSVSS--VEYLVAAGTASGRVSVFQLNKE  108 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchh-hhcccccCccceEEEEEecc--hhHhhhhhcCCceEEeehhhcc
Confidence            34455445677789999999999999999875432 12333334444455555554  3578888999999999876442


Q ss_pred             CceEEeEE---eecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecC
Q 036510           90 NEWIKDHV---FEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA  135 (288)
Q Consensus        90 ~~~~~~~~---~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~  135 (288)
                      ........   -..|...|+|+.|+++  +..+.+|...|+|..-.+..
T Consensus       109 ~p~~~~~~t~~d~~~~~rVTal~Ws~~--~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  109 LPRDLDYVTPCDKSHKCRVTALEWSKN--GMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             CCCcceeeccccccCCceEEEEEeccc--ccEEeecCCCceEEEEEech
Confidence            21111111   1237789999999998  67899999999998766654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=96.78  E-value=0.32  Score=42.50  Aligned_cols=195  Identities=10%  Similarity=0.073  Sum_probs=97.1

Q ss_pred             EEEEcCCCCEEEEee-C-CCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceE
Q 036510           16 DVAMDYYGKRLATAS-S-DYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWI   93 (288)
Q Consensus        16 ~~~~s~~g~~l~s~~-~-d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~   93 (288)
                      .+.++|||++|+... . +..|-+.|+...  +.+..+.--. ...-...+    ...+..-+.||......+...+...
T Consensus       109 ~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~--kvv~ei~vp~-~~~vy~t~----e~~~~~~~~Dg~~~~v~~d~~g~~~  181 (352)
T TIGR02658       109 MTSLTPDNKTLLFYQFSPSPAVGVVDLEGK--AFVRMMDVPD-CYHIFPTA----NDTFFMHCRDGSLAKVGYGTKGNPK  181 (352)
T ss_pred             eEEECCCCCEEEEecCCCCCEEEEEECCCC--cEEEEEeCCC-CcEEEEec----CCccEEEeecCceEEEEecCCCceE
Confidence            567899999988766 3 688999998543  4455444211 11111111    1122233445554443333322111


Q ss_pred             EeE--Eeec-----CCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCC-----CeeeEEee----ccCCCCeeEEEe
Q 036510           94 KDH--VFED-----HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADG-----GWDTSRID----QAHPVGVTSVSW  157 (288)
Q Consensus        94 ~~~--~~~~-----h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~-----~~~~~~~~----~~~~~~v~~i~~  157 (288)
                      ...  .+..     ...+    .|.+.+...++++  ..|+|.+.|+....     .+......    ...+....-+++
T Consensus       182 ~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs--~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~  255 (352)
T TIGR02658       182 IKPTEVFHPEDEYLINHP----AYSNKSGRLVWPT--YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAY  255 (352)
T ss_pred             EeeeeeecCCccccccCC----ceEcCCCcEEEEe--cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEE
Confidence            100  0111     0112    3344221333333  34999999864322     11111111    112333334666


Q ss_pred             CCCCCCCceecccccCCCceeEEee---------cCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCc-E
Q 036510          158 APSTAPGALVGSGFLDPVQKLCSGG---------CDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKS-T  227 (288)
Q Consensus       158 ~p~~~~~~~~~~~~~~~~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~-~  227 (288)
                      +|++.             ++++...         ..+.|-++|..+..    .+..+.. ...+..+.++||.    + +
T Consensus       256 ~~dg~-------------~lyV~~~~~~~~thk~~~~~V~ViD~~t~k----vi~~i~v-G~~~~~iavS~Dg----kp~  313 (352)
T TIGR02658       256 HRARD-------------RIYLLADQRAKWTHKTASRFLFVVDAKTGK----RLRKIEL-GHEIDSINVSQDA----KPL  313 (352)
T ss_pred             cCCCC-------------EEEEEecCCccccccCCCCEEEEEECCCCe----EEEEEeC-CCceeeEEECCCC----CeE
Confidence            66652             2333221         12478899987763    3333321 2257899999985    3 4


Q ss_pred             EEEEe-CCCcEEEEEeecC
Q 036510          228 IASAS-EDGKVIIWTVARE  245 (288)
Q Consensus       228 l~s~s-~D~~i~iw~~~~~  245 (288)
                      |.+.+ .++.|.+.|....
T Consensus       314 lyvtn~~s~~VsViD~~t~  332 (352)
T TIGR02658       314 LYALSTGDKTLYIFDAETG  332 (352)
T ss_pred             EEEeCCCCCcEEEEECcCC
Confidence            55555 6888999998653

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.78  E-value=0.21  Score=46.79  Aligned_cols=227  Identities=16%  Similarity=0.239  Sum_probs=110.5

Q ss_pred             CCCEEEEeeCCC------cEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC------CcEEEeecCCC
Q 036510           22 YGKRLATASSDY------SIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD------GTVIIWKEGNS   89 (288)
Q Consensus        22 ~g~~l~s~~~d~------~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------~~v~iwd~~~~   89 (288)
                      .+.+++.||.++      ++.+||........+..+.. ...-.+++..   .+.++++|+.|      .++-.||....
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~-~r~~~~~~~~---~~~lYv~GG~~~~~~~l~~ve~YD~~~~  359 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPS-PRCRVGVAVL---NGKLYVVGGYDSGSDRLSSVERYDPRTN  359 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCc-ccccccEEEE---CCEEEEEccccCCCcccceEEEecCCCC
Confidence            356777788773      57777765443333333332 2222344443   26788999988      45667777653


Q ss_pred             CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCC-----cEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510           90 NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDG-----NISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG  164 (288)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~  164 (288)
                       .|...-.+...+.......+  +  +.+.|.||.||     ++.-||.+++ .|.....+.........+.+       
T Consensus       360 -~W~~~a~M~~~R~~~~v~~l--~--g~iYavGG~dg~~~l~svE~YDp~~~-~W~~va~m~~~r~~~gv~~~-------  426 (571)
T KOG4441|consen  360 -QWTPVAPMNTKRSDFGVAVL--D--GKLYAVGGFDGEKSLNSVECYDPVTN-KWTPVAPMLTRRSGHGVAVL-------  426 (571)
T ss_pred             -ceeccCCccCccccceeEEE--C--CEEEEEeccccccccccEEEecCCCC-cccccCCCCcceeeeEEEEE-------
Confidence             36443333222211111111  1  67788888886     3556666543 34322111100000111111       


Q ss_pred             ceecccccCCCceeEEeecCC------cEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCc--
Q 036510          165 ALVGSGFLDPVQKLCSGGCDN------TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGK--  236 (288)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~--  236 (288)
                               ++.+.+.||.++      ++..||..++.|...  ..+..-........+.      +.+.|.|+.|+.  
T Consensus       427 ---------~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~--~~M~~~R~~~g~a~~~------~~iYvvGG~~~~~~  489 (571)
T KOG4441|consen  427 ---------GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI--APMNTRRSGFGVAVLN------GKIYVVGGFDGTSA  489 (571)
T ss_pred             ---------CCEEEEEcCcCCCccccceEEEEcCCCCceeec--CCcccccccceEEEEC------CEEEEECCccCCCc
Confidence                     124566666444      566788888766432  2222111111222221      357778887763  


Q ss_pred             ---EEEEEeecCCCcccceEeeccccCeEEEEee-cCCCEEEEEeCCC-----cEEEeE
Q 036510          237 ---VIIWTVAREGDQWEGKVLHDFKTPVYRVSWS-LTGNILAVADGNN-----NVTLWE  286 (288)
Q Consensus       237 ---i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~s-pdg~~l~s~~~d~-----~v~~w~  286 (288)
                         |..||+...+  |  ..+.....+...+... -+++..++|+.|+     +|..||
T Consensus       490 ~~~VE~ydp~~~~--W--~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~yd  544 (571)
T KOG4441|consen  490 LSSVERYDPETNQ--W--TMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYD  544 (571)
T ss_pred             cceEEEEcCCCCc--e--eEcccCccccccccEEEECCEEEEEecccCccccceeEEcC
Confidence               6678776543  2  1122111122222222 3677888888775     455554

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.77  E-value=0.0049  Score=36.75  Aligned_cols=30  Identities=20%  Similarity=0.389  Sum_probs=27.5

Q ss_pred             ccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          258 KTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       258 ~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      .+.|..++|+|+..+||.|..||.|.|+++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            457899999999999999999999999984

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.72  E-value=0.43  Score=43.15  Aligned_cols=219  Identities=16%  Similarity=0.189  Sum_probs=102.8

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN   90 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~   90 (288)
                      +-....++++|+|+.++. +.|+...|+....  .+...     .+.....+|..   ...+|.-...++|+|+.-....
T Consensus        32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~--~r~k~-----~G~g~~~vw~~---~n~yAv~~~~~~I~I~kn~~~~  100 (443)
T PF04053_consen   32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALA--WRNKA-----FGSGLSFVWSS---RNRYAVLESSSTIKIYKNFKNE  100 (443)
T ss_dssp             SS--SEEEE-TTSSEEEE-EETTEEEEEETTT--TEEEE-----EEE-SEEEE-T---SSEEEEE-TTS-EEEEETTEE-
T ss_pred             CcCCeeEEECCCCCEEEE-EcCCEEEEEEccC--Ccccc-----cCceeEEEEec---CccEEEEECCCeEEEEEcCccc
Confidence            345678899999998877 6677877876321  12221     22234577875   3457777778999997322111


Q ss_pred             ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceeccc
Q 036510           91 EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG  170 (288)
Q Consensus        91 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~  170 (288)
                      .   ...+.. ...+..+  .+   |.+|+..+. +.|.+||+.+....   .... . ..|..+.|++++         
T Consensus       101 ~---~k~i~~-~~~~~~I--f~---G~LL~~~~~-~~i~~yDw~~~~~i---~~i~-v-~~vk~V~Ws~~g---------  156 (443)
T PF04053_consen  101 V---VKSIKL-PFSVEKI--FG---GNLLGVKSS-DFICFYDWETGKLI---RRID-V-SAVKYVIWSDDG---------  156 (443)
T ss_dssp             T---T------SS-EEEE--E----SSSEEEEET-TEEEEE-TTT--EE---EEES-S--E-EEEEE-TTS---------
T ss_pred             c---ceEEcC-CcccceE--Ec---CcEEEEECC-CCEEEEEhhHccee---eEEe-c-CCCcEEEEECCC---------
Confidence            1   111211 1122333  33   444554443 47999999865322   1111 1 238899999986         


Q ss_pred             ccCCCceeEEeecCCcEEEEEEeCC---------c-eeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEE
Q 036510          171 FLDPVQKLCSGGCDNTVKVWKLYNG---------I-WKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIW  240 (288)
Q Consensus       171 ~~~~~~~l~s~~~d~~i~iwd~~~~---------~-~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw  240 (288)
                           .+++-.+ +.++.|++....         . ..++.+++   -...|.+..|..+      .|+-.... .|+-+
T Consensus       157 -----~~val~t-~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E---~~~~IkSg~W~~d------~fiYtT~~-~lkYl  220 (443)
T PF04053_consen  157 -----ELVALVT-KDSIYILKYNLEAVAAIPEEGVEDAFELIHE---ISERIKSGCWVED------CFIYTTSN-HLKYL  220 (443)
T ss_dssp             -----SEEEEE--S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEE---E-S--SEEEEETT------EEEEE-TT-EEEEE
T ss_pred             -----CEEEEEe-CCeEEEEEecchhcccccccCchhceEEEEE---ecceeEEEEEEcC------EEEEEcCC-eEEEE
Confidence                 5555554 457777775321         0 01111111   1233555555442      22222222 33331


Q ss_pred             EeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          241 TVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                        - .+   +...+.....+++=+.+.|+.+.+...+.|+.|..+.
T Consensus       221 --~-~G---e~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~  260 (443)
T PF04053_consen  221 --V-NG---ETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYE  260 (443)
T ss_dssp             --E-TT---EEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE
T ss_pred             --E-cC---CcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEE
Confidence              1 11   2234445567888899999888999999999888765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.65  E-value=0.0086  Score=54.51  Aligned_cols=69  Identities=20%  Similarity=0.432  Sum_probs=52.2

Q ss_pred             eEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeE-EEEeecCCCEEEEEeCCCcEEEeEcC
Q 036510          212 VRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVY-RVSWSLTGNILAVADGNNNVTLWEEA  288 (288)
Q Consensus       212 V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~-~~~~spdg~~l~s~~~d~~v~~w~~~  288 (288)
                      |.-+.|+|..    .+||.+..+|.|-+..++.. ..   -.+.-++.+++ +++|.|||+.||+|=+||+|+|-|.+
T Consensus        23 i~~~ewnP~~----dLiA~~t~~gelli~R~n~q-Rl---wtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve   92 (665)
T KOG4640|consen   23 IKRIEWNPKM----DLIATRTEKGELLIHRLNWQ-RL---WTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVE   92 (665)
T ss_pred             eEEEEEcCcc----chhheeccCCcEEEEEeccc-ee---EeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEcc
Confidence            6778999975    47999999999988876521 11   11111344565 99999999999999999999999853

>PHA02713 hypothetical protein; Provisional

Probab=96.65  E-value=0.13  Score=48.17  Aligned_cols=62  Identities=3%  Similarity=0.032  Sum_probs=35.9

Q ss_pred             ceeEEeecC------CcEEEEEEeC-CceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCC--cEEEEEeecC
Q 036510          176 QKLCSGGCD------NTVKVWKLYN-GIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG--KVIIWTVARE  245 (288)
Q Consensus       176 ~~l~s~~~d------~~i~iwd~~~-~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~--~i~iw~~~~~  245 (288)
                      ...+.||.+      ..+-.||..+ ..|..  +..+.........+.+.      +...|.|+.|+  .+..||+...
T Consensus       465 ~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~--~~~m~~~r~~~~~~~~~------~~iyv~Gg~~~~~~~e~yd~~~~  535 (557)
T PHA02713        465 DIYVVCDIKDEKNVKTCIFRYNTNTYNGWEL--ITTTESRLSALHTILHD------NTIMMLHCYESYMLQDTFNVYTY  535 (557)
T ss_pred             EEEEEeCCCCCCccceeEEEecCCCCCCeeE--ccccCcccccceeEEEC------CEEEEEeeecceeehhhcCcccc
Confidence            445556553      2456788887 56642  23333333333444432      46788999888  6777777654

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.50  E-value=0.35  Score=39.40  Aligned_cols=193  Identities=16%  Similarity=0.138  Sum_probs=93.4

Q ss_pred             CCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeE-EEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEee-
Q 036510           22 YGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVW-EVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFE-   99 (288)
Q Consensus        22 ~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~-   99 (288)
                      ++.+++.++.++.+..+|...  ++.+..... ...+. ....    .+..++.++.|+.+..+|..+++......... 
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~t--G~~~W~~~~-~~~~~~~~~~----~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~  107 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKT--GKVLWRFDL-PGPISGAPVV----DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS  107 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTT--SEEEEEEEC-SSCGGSGEEE----ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SS
T ss_pred             eCCEEEEEcCCCEEEEEECCC--CCEEEEeec-cccccceeee----cccccccccceeeeEecccCCcceeeeeccccc
Confidence            466777788999999999743  355544443 11111 1111    14556666688899999988876321101111 


Q ss_pred             -cCC-CceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCce
Q 036510          100 -DHK-SSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQK  177 (288)
Q Consensus       100 -~h~-~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~  177 (288)
                       ... .......+.    +..++.+..++.|..+|.+++...  .......+.....+...     ........+.++ .
T Consensus       108 ~~~~~~~~~~~~~~----~~~~~~~~~~g~l~~~d~~tG~~~--w~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~  175 (238)
T PF13360_consen  108 PPAGVRSSSSPAVD----GDRLYVGTSSGKLVALDPKTGKLL--WKYPVGEPRGSSPISSF-----SDINGSPVISDG-R  175 (238)
T ss_dssp             CTCSTB--SEEEEE----TTEEEEEETCSEEEEEETTTTEEE--EEEESSTT-SS--EEEE-----TTEEEEEECCTT-E
T ss_pred             cccccccccCceEe----cCEEEEEeccCcEEEEecCCCcEE--EEeecCCCCCCcceeee-----cccccceEEECC-E
Confidence             011 011222222    345667777899999998876421  11111111111111000     000011112222 4


Q ss_pred             eEEeecCCc-EEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510          178 LCSGGCDNT-VKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE  245 (288)
Q Consensus       178 l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~  245 (288)
                      +..++.++. +.+ |..++..    .....  ...+... ..+.    +..|..++.|+.|..||++..
T Consensus       176 v~~~~~~g~~~~~-d~~tg~~----~w~~~--~~~~~~~-~~~~----~~~l~~~~~~~~l~~~d~~tG  232 (238)
T PF13360_consen  176 VYVSSGDGRVVAV-DLATGEK----LWSKP--ISGIYSL-PSVD----GGTLYVTSSDGRLYALDLKTG  232 (238)
T ss_dssp             EEEECCTSSEEEE-ETTTTEE----EEEEC--SS-ECEC-EECC----CTEEEEEETTTEEEEEETTTT
T ss_pred             EEEEcCCCeEEEE-ECCCCCE----EEEec--CCCccCC-ceee----CCEEEEEeCCCEEEEEECCCC
Confidence            555555664 555 8877631    11111  1112221 1222    356777779999999998753

...

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.50  E-value=0.88  Score=43.96  Aligned_cols=135  Identities=10%  Similarity=0.123  Sum_probs=79.5

Q ss_pred             CCcEEEEEeCCCCceeeEEEeccccC-eEEEEecCCC-----CCCEEEEeeCCCcEEEeecCCCCceE---EeEEeecCC
Q 036510           32 DYSIKIIGVGNNTSQHLAKLSGHKGA-VWEVAWAHPK-----FGSILASCSFDGTVIIWKEGNSNEWI---KDHVFEDHK  102 (288)
Q Consensus        32 d~~i~lwd~~~~~~~~~~~~~~h~~~-v~~~~~~~~~-----~~~~l~s~s~d~~v~iwd~~~~~~~~---~~~~~~~h~  102 (288)
                      ...+.-.|+  ++++.+.....|... |..++  ++.     .+.....|=.+..+..||++-.+...   ..+.+ ...
T Consensus       503 ~~~ly~mDL--e~GKVV~eW~~~~~~~v~~~~--p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y-~~~  577 (794)
T PF08553_consen  503 PNKLYKMDL--ERGKVVEEWKVHDDIPVVDIA--PDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY-SSK  577 (794)
T ss_pred             CCceEEEec--CCCcEEEEeecCCCcceeEec--ccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc-ccC
Confidence            344444455  455677777777654 66554  221     13344556677888899998643110   11112 233


Q ss_pred             CceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEee
Q 036510          103 SSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGG  182 (288)
Q Consensus       103 ~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~  182 (288)
                      ....|++-..+  | ++|.|+.+|.||+||- .+..  --..+.+...+|..|.-+.++.             -+|+  .
T Consensus       578 ~~Fs~~aTt~~--G-~iavgs~~G~IRLyd~-~g~~--AKT~lp~lG~pI~~iDvt~DGk-------------wila--T  636 (794)
T PF08553_consen  578 NNFSCFATTED--G-YIAVGSNKGDIRLYDR-LGKR--AKTALPGLGDPIIGIDVTADGK-------------WILA--T  636 (794)
T ss_pred             CCceEEEecCC--c-eEEEEeCCCcEEeecc-cchh--hhhcCCCCCCCeeEEEecCCCc-------------EEEE--e
Confidence            45667765543  3 5899999999999983 2211  1122335567899998888763             1233  3


Q ss_pred             cCCcEEEEEE
Q 036510          183 CDNTVKVWKL  192 (288)
Q Consensus       183 ~d~~i~iwd~  192 (288)
                      ++..+.|++.
T Consensus       637 c~tyLlLi~t  646 (794)
T PF08553_consen  637 CKTYLLLIDT  646 (794)
T ss_pred             ecceEEEEEE
Confidence            4677888776

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.48  E-value=0.0062  Score=57.33  Aligned_cols=68  Identities=22%  Similarity=0.441  Sum_probs=53.9

Q ss_pred             eEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          212 VRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       212 V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      +.+++|+|..    -.|+.|=.-|.+.+|......   .-+....|..+|..+.|||+|..+++++.-|.|++|+
T Consensus        62 atSLCWHpe~----~vLa~gwe~g~~~v~~~~~~e---~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr  129 (1416)
T KOG3617|consen   62 ATSLCWHPEE----FVLAQGWEMGVSDVQKTNTTE---THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWR  129 (1416)
T ss_pred             hhhhccChHH----HHHhhccccceeEEEecCCce---eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEE
Confidence            4679999973    346666668899999876432   2244456778999999999999999999999999997

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.40  E-value=0.025  Score=51.67  Aligned_cols=93  Identities=19%  Similarity=0.338  Sum_probs=64.2

Q ss_pred             CceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCee-EEEeCCCCCCCceecccccCCCceeEEe
Q 036510          103 SSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVT-SVSWAPSTAPGALVGSGFLDPVQKLCSG  181 (288)
Q Consensus       103 ~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~-~i~~~p~~~~~~~~~~~~~~~~~~l~s~  181 (288)
                      ..+..+.|+|.  -.++|.+..+|.|-++-+.    |+..-....++..++ +++|.|++              ++++.|
T Consensus        21 ~~i~~~ewnP~--~dLiA~~t~~gelli~R~n----~qRlwtip~p~~~v~~sL~W~~DG--------------kllaVg   80 (665)
T KOG4640|consen   21 INIKRIEWNPK--MDLIATRTEKGELLIHRLN----WQRLWTIPIPGENVTASLCWRPDG--------------KLLAVG   80 (665)
T ss_pred             cceEEEEEcCc--cchhheeccCCcEEEEEec----cceeEeccCCCCccceeeeecCCC--------------CEEEEE
Confidence            45788999997  5678999999988887554    332222233444555 99999997              789999


Q ss_pred             ecCCcEEEEEEeCCceeeeeeec-cccCCcceEEEEecC
Q 036510          182 GCDNTVKVWKLYNGIWKMDCFPA-LQMHTDWVRDVAWAP  219 (288)
Q Consensus       182 ~~d~~i~iwd~~~~~~~~~~~~~-~~~h~~~V~~v~~sp  219 (288)
                      =.||+|+|-|++++..    +.. ...-...|.++-|.|
T Consensus        81 ~kdG~I~L~Dve~~~~----l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   81 FKDGTIRLHDVEKGGR----LVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             ecCCeEEEEEccCCCc----eeccccccccchheeeccc
Confidence            9999999999988632    111 112233466777754

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.37  E-value=0.58  Score=40.42  Aligned_cols=134  Identities=14%  Similarity=0.108  Sum_probs=80.4

Q ss_pred             CcEEEEeecCC----CCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeee
Q 036510          126 GNISVFTARAD----GGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDC  201 (288)
Q Consensus       126 ~~i~i~d~~~~----~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  201 (288)
                      |.|.+|++.+.    ..+.. ......+.+|+++.-..                ..|+.+ ..+.|.+|++.... .+..
T Consensus        62 Gri~v~~i~~~~~~~~~l~~-i~~~~~~g~V~ai~~~~----------------~~lv~~-~g~~l~v~~l~~~~-~l~~  122 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKL-IHSTEVKGPVTAICSFN----------------GRLVVA-VGNKLYVYDLDNSK-TLLK  122 (321)
T ss_dssp             EEEEEEEECSS-----EEEE-EEEEEESS-EEEEEEET----------------TEEEEE-ETTEEEEEEEETTS-SEEE
T ss_pred             cEEEEEEEEcccccceEEEE-EEEEeecCcceEhhhhC----------------CEEEEe-ecCEEEEEEccCcc-cchh
Confidence            78999998763    11111 11223466788775331                234433 35889999998764 1121


Q ss_pred             eeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEee-cc-ccCeEEEEeecCCCEEEEEeCC
Q 036510          202 FPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLH-DF-KTPVYRVSWSLTGNILAVADGN  279 (288)
Q Consensus       202 ~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~-~~-~~~i~~~~~spdg~~l~s~~~d  279 (288)
                      ...+..+. .|.++....      .+|+.|...+.+.++..+....  ....+. +. ..+++++.|-+|++.++.++.+
T Consensus       123 ~~~~~~~~-~i~sl~~~~------~~I~vgD~~~sv~~~~~~~~~~--~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~  193 (321)
T PF03178_consen  123 KAFYDSPF-YITSLSVFK------NYILVGDAMKSVSLLRYDEENN--KLILVARDYQPRWVTAAEFLVDEDTIIVGDKD  193 (321)
T ss_dssp             EEEE-BSS-SEEEEEEET------TEEEEEESSSSEEEEEEETTTE---EEEEEEESS-BEEEEEEEE-SSSEEEEEETT
T ss_pred             hheecceE-EEEEEeccc------cEEEEEEcccCEEEEEEEccCC--EEEEEEecCCCccEEEEEEecCCcEEEEEcCC
Confidence            22222222 577777654      4788888888888886664211  122222 22 3468999999888899999999


Q ss_pred             CcEEEeEc
Q 036510          280 NNVTLWEE  287 (288)
Q Consensus       280 ~~v~~w~~  287 (288)
                      |.+.+++.
T Consensus       194 gnl~~l~~  201 (321)
T PF03178_consen  194 GNLFVLRY  201 (321)
T ss_dssp             SEEEEEEE
T ss_pred             CeEEEEEE
Confidence            99999873

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.20  E-value=0.85  Score=40.66  Aligned_cols=174  Identities=15%  Similarity=0.182  Sum_probs=87.0

Q ss_pred             eecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeec-----cCCCCeeEEEeCCCCCCCceeccccc
Q 036510           98 FEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQ-----AHPVGVTSVSWAPSTAPGALVGSGFL  172 (288)
Q Consensus        98 ~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~-----~~~~~v~~i~~~p~~~~~~~~~~~~~  172 (288)
                      +....++|++++.+--  | .+|.|..+|.+.|.|+|-+.-+....+.+     .....++++.|......+.-+.    
T Consensus        82 ~~~~~g~vtal~~S~i--G-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS----  154 (395)
T PF08596_consen   82 LDAKQGPVTALKNSDI--G-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS----  154 (395)
T ss_dssp             E---S-SEEEEEE-BT--S-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE----
T ss_pred             eeccCCcEeEEecCCC--c-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCccc----
Confidence            3345789999997632  4 58889999999999997543222111111     1234577888864321110000    


Q ss_pred             CCCceeEEeecCCcEEEEEEeC---CceeeeeeeccccCCcceEEEE-ecCCCCC-----------------CCcEEEEE
Q 036510          173 DPVQKLCSGGCDNTVKVWKLYN---GIWKMDCFPALQMHTDWVRDVA-WAPNLGL-----------------PKSTIASA  231 (288)
Q Consensus       173 ~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~h~~~V~~v~-~sp~~~~-----------------~~~~l~s~  231 (288)
                        .-.|..|...|.+.+|++..   +.+..+.......+.+.|..+. |+.+.+.                 .+.+ +..
T Consensus       155 --Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~-vVv  231 (395)
T PF08596_consen  155 --SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGY-VVV  231 (395)
T ss_dssp             --EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EE-EEE
T ss_pred             --ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcE-EEE
Confidence              02466788889999998863   2233333333345666666665 3222110                 1233 444


Q ss_pred             eCCCcEEEEEeecCCCcccceEeecccc--CeEEEEe-----ecCCCEEEEEeCCCcEEEeE
Q 036510          232 SEDGKVIIWTVAREGDQWEGKVLHDFKT--PVYRVSW-----SLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       232 s~D~~i~iw~~~~~~~~~~~~~~~~~~~--~i~~~~~-----spdg~~l~s~~~d~~v~~w~  286 (288)
                      ..+..||++.+-..+     ...+.+..  ...++.+     ...+..|++-..||.|+++-
T Consensus       232 vSe~~irv~~~~~~k-----~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~S  288 (395)
T PF08596_consen  232 VSESDIRVFKPPKSK-----GAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYS  288 (395)
T ss_dssp             E-SSEEEEE-TT--------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEE
T ss_pred             EcccceEEEeCCCCc-----ccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEE
Confidence            556789998764321     11122222  2234455     34677888889999999985

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=95.91  E-value=1.2  Score=39.76  Aligned_cols=97  Identities=7%  Similarity=-0.037  Sum_probs=53.1

Q ss_pred             ceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcc-eEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEe
Q 036510          176 QKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDW-VRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVL  254 (288)
Q Consensus       176 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~-V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~  254 (288)
                      ..++.++.++.+..+|..++.    .+.....-... ..+....      +.+|..++.|+.+...|....+..+.... 
T Consensus       295 ~~vy~~~~~g~l~ald~~tG~----~~W~~~~~~~~~~~sp~v~------~g~l~v~~~~G~l~~ld~~tG~~~~~~~~-  363 (394)
T PRK11138        295 GRIYLVDQNDRVYALDTRGGV----ELWSQSDLLHRLLTAPVLY------NGYLVVGDSEGYLHWINREDGRFVAQQKV-  363 (394)
T ss_pred             CEEEEEcCCCeEEEEECCCCc----EEEcccccCCCcccCCEEE------CCEEEEEeCCCEEEEEECCCCCEEEEEEc-
Confidence            456667788999999987763    11111100000 1111111      24688899999999998765322111111 


Q ss_pred             eccccCeEE-EEeecCCCEEEEEeCCCcEEEeEc
Q 036510          255 HDFKTPVYR-VSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       255 ~~~~~~i~~-~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                        ....+.+ ..+  .+..|++++.||.|..++.
T Consensus       364 --~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        364 --DSSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             --CCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence              1112221 111  3557888899999988764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=95.90  E-value=1.2  Score=39.74  Aligned_cols=223  Identities=13%  Similarity=0.130  Sum_probs=103.6

Q ss_pred             CCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCC
Q 036510           23 GKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHK  102 (288)
Q Consensus        23 g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~  102 (288)
                      +..++.++.++.+..+|...+  +.+-+..... .+.+   ++--.+..++.+..++.+..+|..+++.   ....... 
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG--~~~W~~~~~~-~~~s---sP~v~~~~v~v~~~~g~l~ald~~tG~~---~W~~~~~-  189 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDG--EVAWQTKVAG-EALS---RPVVSDGLVLVHTSNGMLQALNESDGAV---KWTVNLD-  189 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCC--CCcccccCCC-ceec---CCEEECCEEEEECCCCEEEEEEccCCCE---eeeecCC-
Confidence            345666777888877776433  3333332221 1211   0101134566677889999999987763   2222211 


Q ss_pred             CceeEEE--eccCCCCeEEEEEeCCCcEEEEeecCCCC-eeeEEeeccCC-CCe---eEEEeCCCCCCCceecccccCCC
Q 036510          103 SSVNSID--WAPHELGLCLACGSSDGNISVFTARADGG-WDTSRIDQAHP-VGV---TSVSWAPSTAPGALVGSGFLDPV  175 (288)
Q Consensus       103 ~~v~~l~--~~p~~~~~~l~sg~~d~~i~i~d~~~~~~-~~~~~~~~~~~-~~v---~~i~~~p~~~~~~~~~~~~~~~~  175 (288)
                      .+...+.  -+|--....++.++.++.+..+|..++.. |.. ....... ..+   ..+.-+|           ... +
T Consensus       190 ~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~-~~~~~~~~~~~~~~~~~~~sP-----------~v~-~  256 (394)
T PRK11138        190 VPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQ-RISQPTGATEIDRLVDVDTTP-----------VVV-G  256 (394)
T ss_pred             CCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhhee-ccccCCCccchhcccccCCCc-----------EEE-C
Confidence            1100000  01210012355567788888888766532 221 1000000 000   0000111           111 1


Q ss_pred             ceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEee
Q 036510          176 QKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLH  255 (288)
Q Consensus       176 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~  255 (288)
                      ..++.++.++.+..+|..++.    .+.....  .....+...      +..|..++.|+.+...|.+..+..+......
T Consensus       257 ~~vy~~~~~g~l~ald~~tG~----~~W~~~~--~~~~~~~~~------~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~  324 (394)
T PRK11138        257 GVVYALAYNGNLVALDLRSGQ----IVWKREY--GSVNDFAVD------GGRIYLVDQNDRVYALDTRGGVELWSQSDLL  324 (394)
T ss_pred             CEEEEEEcCCeEEEEECCCCC----EEEeecC--CCccCcEEE------CCEEEEEcCCCeEEEEECCCCcEEEcccccC
Confidence            345566678899999988773    1111110  001111111      2457777888888888876543222211111


Q ss_pred             c--cccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          256 D--FKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       256 ~--~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      .  ...++.      .+.+++.++.||.|.+.|
T Consensus       325 ~~~~~sp~v------~~g~l~v~~~~G~l~~ld  351 (394)
T PRK11138        325 HRLLTAPVL------YNGYLVVGDSEGYLHWIN  351 (394)
T ss_pred             CCcccCCEE------ECCEEEEEeCCCEEEEEE
Confidence            0  112221      245566677777777766

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.80  E-value=1.1  Score=38.67  Aligned_cols=178  Identities=13%  Similarity=0.145  Sum_probs=99.8

Q ss_pred             CcEEEeecCCC----CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeE
Q 036510           79 GTVIIWKEGNS----NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTS  154 (288)
Q Consensus        79 ~~v~iwd~~~~----~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~  154 (288)
                      |.+.++++...    ......... ...++|+++.-..   +.++++.  .+.|.+|++.....+....... .+..+.+
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~~---~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~-~~~~i~s  134 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHST-EVKGPVTAICSFN---GRLVVAV--GNKLYVYDLDNSKTLLKKAFYD-SPFYITS  134 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEET---TEEEEEE--TTEEEEEEEETTSSEEEEEEE--BSSSEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhhC---CEEEEee--cCEEEEEEccCcccchhhheec-ceEEEEE
Confidence            88999998763    122222222 3567899987542   4544433  4789999998765333322221 2335666


Q ss_pred             EEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCC
Q 036510          155 VSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASED  234 (288)
Q Consensus       155 i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D  234 (288)
                      +....                ++++.|..-+.+.++........+..+.. ....-++.++.|-++.    ..++.+..+
T Consensus       135 l~~~~----------------~~I~vgD~~~sv~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~----~~~i~~D~~  193 (321)
T PF03178_consen  135 LSVFK----------------NYILVGDAMKSVSLLRYDEENNKLILVAR-DYQPRWVTAAEFLVDE----DTIIVGDKD  193 (321)
T ss_dssp             EEEET----------------TEEEEEESSSSEEEEEEETTTE-EEEEEE-ESS-BEEEEEEEE-SS----SEEEEEETT
T ss_pred             Eeccc----------------cEEEEEEcccCEEEEEEEccCCEEEEEEe-cCCCccEEEEEEecCC----cEEEEEcCC
Confidence            65432                57888888888998876653222222221 2335568999998663    478899999


Q ss_pred             CcEEEEEeecCC-Ccc----cceEee--ccccCeEEE---EeecC--CC------EEEEEeCCCcEEE
Q 036510          235 GKVIIWTVAREG-DQW----EGKVLH--DFKTPVYRV---SWSLT--GN------ILAVADGNNNVTL  284 (288)
Q Consensus       235 ~~i~iw~~~~~~-~~~----~~~~~~--~~~~~i~~~---~~spd--g~------~l~s~~~d~~v~~  284 (288)
                      +++.++...... ...    ......  ..+..|+++   ++.|.  +.      .++.++.+|.|-+
T Consensus       194 gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  194 GNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             SEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             CeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence            999999886321 111    111222  234567777   66662  22      4888889998763

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PHA02713 hypothetical protein; Provisional

Probab=95.51  E-value=0.29  Score=45.84  Aligned_cols=23  Identities=9%  Similarity=0.261  Sum_probs=16.9

Q ss_pred             ceeEEeecCC--cEEEEEEeCCcee
Q 036510          176 QKLCSGGCDN--TVKVWKLYNGIWK  198 (288)
Q Consensus       176 ~~l~s~~~d~--~i~iwd~~~~~~~  198 (288)
                      .+.+.||.|+  ++-.||..+.+|.
T Consensus       514 ~iyv~Gg~~~~~~~e~yd~~~~~W~  538 (557)
T PHA02713        514 TIMMLHCYESYMLQDTFNVYTYEWN  538 (557)
T ss_pred             EEEEEeeecceeehhhcCccccccc
Confidence            6677888888  6667887776654

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.46  E-value=0.19  Score=45.33  Aligned_cols=153  Identities=13%  Similarity=0.094  Sum_probs=83.3

Q ss_pred             CeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCC
Q 036510          116 GLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNG  195 (288)
Q Consensus       116 ~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  195 (288)
                      +.++.++.....|+-.|+.++.....+..   +.. |.-+.+.|+..-.      .+.+.+.|+ |-.|+.|.-||++-.
T Consensus       346 nlil~~~~~~~~l~klDIE~GKIVeEWk~---~~d-i~mv~~t~d~K~~------Ql~~e~Tlv-GLs~n~vfriDpRv~  414 (644)
T KOG2395|consen  346 NLILMDGGEQDKLYKLDIERGKIVEEWKF---EDD-INMVDITPDFKFA------QLTSEQTLV-GLSDNSVFRIDPRVQ  414 (644)
T ss_pred             ceEeeCCCCcCcceeeecccceeeeEeec---cCC-cceeeccCCcchh------cccccccEE-eecCCceEEeccccc
Confidence            44555665556666667766543333332   222 5555566655321      122234444 556788999998742


Q ss_pred             ceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEE
Q 036510          196 IWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAV  275 (288)
Q Consensus       196 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s  275 (288)
                      ..  ..+...++|. +.+.-.|+--.-....+||.||.+|.||+||-..   ...++.+-+++.+|.-+.-+.||+.|+.
T Consensus       415 ~~--~kl~~~q~kq-y~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~---~~AKTAlPgLG~~I~hVdvtadGKwil~  488 (644)
T KOG2395|consen  415 GK--NKLAVVQSKQ-YSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIG---RRAKTALPGLGDAIKHVDVTADGKWILA  488 (644)
T ss_pred             Cc--ceeeeeeccc-cccccccceeeecCCceEEEeecCCcEEeehhhh---hhhhhcccccCCceeeEEeeccCcEEEE
Confidence            11  0111112222 1222222221000135899999999999998632   2233445567889999999999999775


Q ss_pred             EeCCCcEEEeE
Q 036510          276 ADGNNNVTLWE  286 (288)
Q Consensus       276 ~~~d~~v~~w~  286 (288)
                      .+ +..+-|-+
T Consensus       489 Tc-~tyLlLi~  498 (644)
T KOG2395|consen  489 TC-KTYLLLID  498 (644)
T ss_pred             ec-ccEEEEEE
Confidence            54 34444433

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.28  E-value=2.7  Score=39.66  Aligned_cols=199  Identities=15%  Similarity=0.202  Sum_probs=92.8

Q ss_pred             cCeEEEEecCCCCCCEEEEee------CCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCc-E
Q 036510           56 GAVWEVAWAHPKFGSILASCS------FDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGN-I  128 (288)
Q Consensus        56 ~~v~~~~~~~~~~~~~l~s~s------~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~-i  128 (288)
                      ..+.+.+.+++  |+.++..-      .|..-.||-...+.....  ...+  .....-.|+|++  ..+.+....+. +
T Consensus       350 ~~vsspaiSpd--G~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~--lt~g--~~~t~PsWspDG--~~lw~v~dg~~~~  421 (591)
T PRK13616        350 GNITSAALSRS--GRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQ--VLEG--HSLTRPSWSLDA--DAVWVVVDGNTVV  421 (591)
T ss_pred             cCcccceECCC--CCEEEEEEeecCCCCCcceEEEEEeCCCccee--eecC--CCCCCceECCCC--CceEEEecCcceE
Confidence            35667777764  67666554      355556664332222111  1222  236778999983  33333332212 2


Q ss_pred             EEEeecCCCCeeeEEe-----eccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEE---eCCceeee
Q 036510          129 SVFTARADGGWDTSRI-----DQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKL---YNGIWKMD  200 (288)
Q Consensus       129 ~i~d~~~~~~~~~~~~-----~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~---~~~~~~~~  200 (288)
                      ++.+-...........     .+.....|.++.|||++.              .++--. ++.|.+=-+   ..+...+.
T Consensus       422 ~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~--------------RiA~i~-~g~v~Va~Vvr~~~G~~~l~  486 (591)
T PRK13616        422 RVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGV--------------RAAMII-GGKVYLAVVEQTEDGQYALT  486 (591)
T ss_pred             EEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCC--------------EEEEEE-CCEEEEEEEEeCCCCceeec
Confidence            2222111111110000     002245699999999984              222111 244444211   22221111


Q ss_pred             eeeccc-cCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCC
Q 036510          201 CFPALQ-MHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGN  279 (288)
Q Consensus       201 ~~~~~~-~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d  279 (288)
                      ....+. +-...+.++.|.++.     .|+.+..+..-.+|.+...+.............++.+++=+|+  .++..+.+
T Consensus       487 ~~~~l~~~l~~~~~~l~W~~~~-----~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~  559 (591)
T PRK13616        487 NPREVGPGLGDTAVSLDWRTGD-----SLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDAR  559 (591)
T ss_pred             ccEEeecccCCccccceEecCC-----EEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCC
Confidence            111121 122235788999873     3556666666667777643221111011112356777777663  46666777


Q ss_pred             CcEEE
Q 036510          280 NNVTL  284 (288)
Q Consensus       280 ~~v~~  284 (288)
                      +.+++
T Consensus       560 g~~~l  564 (591)
T PRK13616        560 AVLQL  564 (591)
T ss_pred             ceEEe
Confidence            75543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=95.14  E-value=1.8  Score=36.87  Aligned_cols=232  Identities=14%  Similarity=0.200  Sum_probs=110.6

Q ss_pred             EEEEEcC-CCCEEEEeeCCCc-EEEEEeCCCCceee--------EEEeccccCeEEEEecCCCCCCEEEEe-----eCCC
Q 036510           15 HDVAMDY-YGKRLATASSDYS-IKIIGVGNNTSQHL--------AKLSGHKGAVWEVAWAHPKFGSILASC-----SFDG   79 (288)
Q Consensus        15 ~~~~~s~-~g~~l~s~~~d~~-i~lwd~~~~~~~~~--------~~~~~h~~~v~~~~~~~~~~~~~l~s~-----s~d~   79 (288)
                      ..++.+| .+..++-+-.-|+ ..++|...+  +..        +.+.||      -.|+++  |++|.+.     ...|
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g--~~~~~~~a~~gRHFyGH------g~fs~d--G~~LytTEnd~~~g~G   77 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTG--QLLQRLWAPPGRHFYGH------GVFSPD--GRLLYTTENDYETGRG   77 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCC--ceeeEEcCCCCCEEecC------EEEcCC--CCEEEEeccccCCCcE
Confidence            3455566 3344444544444 334555332  222        234455      468765  8888764     4578


Q ss_pred             cEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEE--eC----------------CCcEEEEeecCCCCeee
Q 036510           80 TVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACG--SS----------------DGNISVFTARADGGWDT  141 (288)
Q Consensus        80 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg--~~----------------d~~i~i~d~~~~~~~~~  141 (288)
                      .|-|||...+  +.++..++.|.-.--.+.+.|++  ..|+.+  +-                +-+|.+.|.+++.-...
T Consensus        78 ~IgVyd~~~~--~~ri~E~~s~GIGPHel~l~pDG--~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q  153 (305)
T PF07433_consen   78 VIGVYDAARG--YRRIGEFPSHGIGPHELLLMPDG--ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ  153 (305)
T ss_pred             EEEEEECcCC--cEEEeEecCCCcChhhEEEcCCC--CEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeee
Confidence            9999998732  33555565544344456777774  223322  11                11122222222221111


Q ss_pred             EEee-ccCCCCeeEEEeCCCCCCCceecccc----cCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEE
Q 036510          142 SRID-QAHPVGVTSVSWAPSTAPGALVGSGF----LDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVA  216 (288)
Q Consensus       142 ~~~~-~~~~~~v~~i~~~p~~~~~~~~~~~~----~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~  216 (288)
                      .... .-|..++.-+++.+++.-  ++++-.    .+..-+++.=..++.+...+....        ....-.++|-+|+
T Consensus       154 ~~Lp~~~~~lSiRHLa~~~~G~V--~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~--------~~~~l~~Y~gSIa  223 (305)
T PF07433_consen  154 VELPPDLHQLSIRHLAVDGDGTV--AFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEE--------QWRRLNGYIGSIA  223 (305)
T ss_pred             eecCccccccceeeEEecCCCcE--EEEEecCCCCCccCCeEEEEcCCCcceeccCChH--------HHHhhCCceEEEE
Confidence            1111 235556777777776521  111000    000012222222222333322111        1234567899999


Q ss_pred             ecCCCCCCCcEEEEEe-CCCcEEEEEeecCCCcccceEeeccc-cCeEEEEeecCCCEEEEEeCCCcE
Q 036510          217 WAPNLGLPKSTIASAS-EDGKVIIWTVAREGDQWEGKVLHDFK-TPVYRVSWSLTGNILAVADGNNNV  282 (288)
Q Consensus       217 ~sp~~~~~~~~l~s~s-~D~~i~iw~~~~~~~~~~~~~~~~~~-~~i~~~~~spdg~~l~s~~~d~~v  282 (288)
                      ++++.    ..++..| .-+.+.+||..+.      ..+.... .-+..++-.+++  |+..+..|.+
T Consensus       224 ~~~~g----~~ia~tsPrGg~~~~~d~~tg------~~~~~~~l~D~cGva~~~~~--f~~ssG~G~~  279 (305)
T PF07433_consen  224 ADRDG----RLIAVTSPRGGRVAVWDAATG------RLLGSVPLPDACGVAPTDDG--FLVSSGQGQL  279 (305)
T ss_pred             EeCCC----CEEEEECCCCCEEEEEECCCC------CEeeccccCceeeeeecCCc--eEEeCCCccE
Confidence            99974    4554444 5889999987653      2222111 234556655666  4444444543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.07  E-value=0.097  Score=31.15  Aligned_cols=32  Identities=9%  Similarity=-0.038  Sum_probs=28.6

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCC
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGN   42 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~   42 (288)
                      ...|..++|+|...+||.+..+|.|.++.++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~   42 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW   42 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence            45789999999999999999999999998843

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.00  E-value=0.05  Score=43.70  Aligned_cols=104  Identities=14%  Similarity=0.085  Sum_probs=59.1

Q ss_pred             ceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEee
Q 036510          176 QKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLH  255 (288)
Q Consensus       176 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~  255 (288)
                      ..++.|+.|+.|.+|+...--.....+   ..-...|.+..  |... ...+..+++.|+.||.|++.-.+.   .....
T Consensus        71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~---~s~~e~i~~~I--p~~~-~~~~~c~~~~dg~ir~~n~~p~k~---~g~~g  141 (238)
T KOG2444|consen   71 AKLMVGTSDGAVYVFNWNLEGAHSDRV---CSGEESIDLGI--PNGR-DSSLGCVGAQDGRIRACNIKPNKV---LGYVG  141 (238)
T ss_pred             ceEEeecccceEEEecCCccchHHHhh---hcccccceecc--cccc-ccceeEEeccCCceeeeccccCce---eeeec
Confidence            457889999999998764110000000   11112233322  3221 234788899999999999864321   12222


Q ss_pred             ccc-cCeEEEEeecCCCEEEEE--eCCCcEEEeEcC
Q 036510          256 DFK-TPVYRVSWSLTGNILAVA--DGNNNVTLWEEA  288 (288)
Q Consensus       256 ~~~-~~i~~~~~spdg~~l~s~--~~d~~v~~w~~~  288 (288)
                      .|. .++....-+..++.++.+  |.|..++.|+++
T Consensus       142 ~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  142 QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             cccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            333 455555556667777777  777778888753

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.00  E-value=1.4  Score=41.31  Aligned_cols=189  Identities=17%  Similarity=0.223  Sum_probs=91.9

Q ss_pred             CCCEEEEeeCC------CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCc-----EEEeecCCCC
Q 036510           22 YGKRLATASSD------YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGT-----VIIWKEGNSN   90 (288)
Q Consensus        22 ~g~~l~s~~~d------~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~-----v~iwd~~~~~   90 (288)
                      +|...++||.|      .++..||........+..+........-...    +|.+.+.|+.||.     +-.||..+ +
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~-~  406 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVT-N  406 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE----CCEEEEEeccccccccccEEEecCCC-C
Confidence            46788889988      3466666654444334334332222222222    3778889988865     55566643 3


Q ss_pred             ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCC------cEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510           91 EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDG------NISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG  164 (288)
Q Consensus        91 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~------~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~  164 (288)
                      .|.....+...+.....+.+.    +++.++||.++      ++..||..++ .|.....+..-........        
T Consensus       407 ~W~~va~m~~~r~~~gv~~~~----g~iYi~GG~~~~~~~l~sve~YDP~t~-~W~~~~~M~~~R~~~g~a~--------  473 (571)
T KOG4441|consen  407 KWTPVAPMLTRRSGHGVAVLG----GKLYIIGGGDGSSNCLNSVECYDPETN-TWTLIAPMNTRRSGFGVAV--------  473 (571)
T ss_pred             cccccCCCCcceeeeEEEEEC----CEEEEEcCcCCCccccceEEEEcCCCC-ceeecCCcccccccceEEE--------
Confidence            443322222112122222221    66777787554      4566666543 2322111100000000010        


Q ss_pred             ceecccccCCCceeEEeecCC-----cEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCc---
Q 036510          165 ALVGSGFLDPVQKLCSGGCDN-----TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGK---  236 (288)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~---  236 (288)
                              -++.+.+.||.|+     +|-.+|..+.+|..  +..+......+..+.+.      +...|.|+.|+.   
T Consensus       474 --------~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~--v~~m~~~rs~~g~~~~~------~~ly~vGG~~~~~~l  537 (571)
T KOG4441|consen  474 --------LNGKIYVVGGFDGTSALSSVERYDPETNQWTM--VAPMTSPRSAVGVVVLG------GKLYAVGGFDGNNNL  537 (571)
T ss_pred             --------ECCEEEEECCccCCCccceEEEEcCCCCceeE--cccCccccccccEEEEC------CEEEEEecccCcccc
Confidence                    1124566676665     36678887776642  22333333333333332      356788888874   


Q ss_pred             --EEEEEeec
Q 036510          237 --VIIWTVAR  244 (288)
Q Consensus       237 --i~iw~~~~  244 (288)
                        |..||+..
T Consensus       538 ~~ve~ydp~~  547 (571)
T KOG4441|consen  538 NTVECYDPET  547 (571)
T ss_pred             ceeEEcCCCC
Confidence              55565543

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=94.61  E-value=2.2  Score=38.54  Aligned_cols=151  Identities=15%  Similarity=0.147  Sum_probs=77.7

Q ss_pred             CCCceeEEEeccCCCCeEEEEE-eCC-CcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCcee
Q 036510          101 HKSSVNSIDWAPHELGLCLACG-SSD-GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKL  178 (288)
Q Consensus       101 h~~~v~~l~~~p~~~~~~l~sg-~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l  178 (288)
                      -...+..-+|+|+.......+= ... -.+.++++..+.......    .+..-....|+|++.             +++
T Consensus       191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~----~~g~~~~P~fspDG~-------------~l~  253 (425)
T COG0823         191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN----FNGNNGAPAFSPDGS-------------KLA  253 (425)
T ss_pred             cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec----cCCccCCccCCCCCC-------------EEE
Confidence            3445677788888533222211 222 357888887654322211    122234567888873             445


Q ss_pred             EEeecCCcEEE--EEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeC-CCcEEEEEeecCCCcccceEee
Q 036510          179 CSGGCDNTVKV--WKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE-DGKVIIWTVAREGDQWEGKVLH  255 (288)
Q Consensus       179 ~s~~~d~~i~i--wd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~-D~~i~iw~~~~~~~~~~~~~~~  255 (288)
                      .+...|+...|  .|+..+..  ..+-...+..   ..=.|+|++    ++||-.|+ .|.=.||-....... ......
T Consensus       254 f~~~rdg~~~iy~~dl~~~~~--~~Lt~~~gi~---~~Ps~spdG----~~ivf~Sdr~G~p~I~~~~~~g~~-~~riT~  323 (425)
T COG0823         254 FSSSRDGSPDIYLMDLDGKNL--PRLTNGFGIN---TSPSWSPDG----SKIVFTSDRGGRPQIYLYDLEGSQ-VTRLTF  323 (425)
T ss_pred             EEECCCCCccEEEEcCCCCcc--eecccCCccc---cCccCCCCC----CEEEEEeCCCCCcceEEECCCCCc-eeEeec
Confidence            56667776554  45554421  1111111111   233788874    67777765 555455544432211 112222


Q ss_pred             ccccCeEEEEeecCCCEEEEEeCC
Q 036510          256 DFKTPVYRVSWSLTGNILAVADGN  279 (288)
Q Consensus       256 ~~~~~i~~~~~spdg~~l~s~~~d  279 (288)
                      ...... .-.|||||++|+..+..
T Consensus       324 ~~~~~~-~p~~SpdG~~i~~~~~~  346 (425)
T COG0823         324 SGGGNS-NPVWSPDGDKIVFESSS  346 (425)
T ss_pred             cCCCCc-CccCCCCCCEEEEEecc
Confidence            222222 67899999999888743

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.49  E-value=1.6  Score=41.07  Aligned_cols=107  Identities=15%  Similarity=0.300  Sum_probs=68.8

Q ss_pred             CCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecC------CCCceEEe
Q 036510           22 YGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEG------NSNEWIKD   95 (288)
Q Consensus        22 ~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~------~~~~~~~~   95 (288)
                      -++..+.-+...++.|||.....-+.-..+ ...+.|.++.|...++++.+++.+..+.|.++...      .+..|...
T Consensus        40 ~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i  118 (631)
T PF12234_consen   40 IKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPI  118 (631)
T ss_pred             cCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCccccee
Confidence            344434444456789999865433333333 34678999999987789999999999999999542      12233333


Q ss_pred             EE--eecCC-CceeEEEeccCCCCeEEEEEeCCCcEEEEee
Q 036510           96 HV--FEDHK-SSVNSIDWAPHELGLCLACGSSDGNISVFTA  133 (288)
Q Consensus        96 ~~--~~~h~-~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~  133 (288)
                      +.  +..|. .+|....|.++  |.+++ | .++.+.|+|-
T Consensus       119 ~~i~i~~~T~h~Igds~Wl~~--G~LvV-~-sGNqlfv~dk  155 (631)
T PF12234_consen  119 RKIDISSHTPHPIGDSIWLKD--GTLVV-G-SGNQLFVFDK  155 (631)
T ss_pred             EEEEeecCCCCCccceeEecC--CeEEE-E-eCCEEEEECC
Confidence            22  23344 57899999987  44333 3 2467888864

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.26  E-value=0.18  Score=49.16  Aligned_cols=72  Identities=21%  Similarity=0.287  Sum_probs=52.0

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecC-CCCCCEEEEeeCCCcEEEeec
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH-PKFGSILASCSFDGTVIIWKE   86 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~d~~v~iwd~   86 (288)
                      +.+|.+++|+.+|+.++.|=.+|.|.+||...+  +.++-+..|..+.+++-+.- ...+..+.++...|.  +|..
T Consensus       130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~--k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA--KILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CCcceeeEecCCCceeccccCCCcEEEEEccCC--cceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            579999999999999999999999999998643  45666666665655544331 123557777777776  5654

>PRK02888 nitrous-oxide reductase; Validated

Probab=94.22  E-value=3.5  Score=38.72  Aligned_cols=62  Identities=11%  Similarity=0.121  Sum_probs=42.5

Q ss_pred             CCEEEEeeCCCcEEEeecCC----CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCC
Q 036510           69 GSILASCSFDGTVIIWKEGN----SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARAD  136 (288)
Q Consensus        69 ~~~l~s~s~d~~v~iwd~~~----~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~  136 (288)
                      |++...  .++.|.+.|.++    +..  ....++ -......+.++||+ ..+++++..++++.++|+.+.
T Consensus       288 GK~~~V--~gn~V~VID~~t~~~~~~~--v~~yIP-VGKsPHGV~vSPDG-kylyVanklS~tVSVIDv~k~  353 (635)
T PRK02888        288 GKFKTI--GGSKVPVVDGRKAANAGSA--LTRYVP-VPKNPHGVNTSPDG-KYFIANGKLSPTVTVIDVRKL  353 (635)
T ss_pred             CCEEEE--CCCEEEEEECCccccCCcc--eEEEEE-CCCCccceEECCCC-CEEEEeCCCCCcEEEEEChhh
Confidence            554443  367899999876    221  233343 23467889999995 456777788999999999763

>PRK13616 lipoprotein LpqB; Provisional

Probab=94.18  E-value=3.3  Score=39.09  Aligned_cols=162  Identities=12%  Similarity=0.115  Sum_probs=79.1

Q ss_pred             CceeEEEeccCCCCeEEEEEe------CCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCc
Q 036510          103 SSVNSIDWAPHELGLCLACGS------SDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQ  176 (288)
Q Consensus       103 ~~v~~l~~~p~~~~~~l~sg~------~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~  176 (288)
                      ..+...+++|++  ..++...      .|..-.||-...++....  ...+  ....+-.|+|++... ++..+- +..-
T Consensus       350 ~~vsspaiSpdG--~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~--lt~g--~~~t~PsWspDG~~l-w~v~dg-~~~~  421 (591)
T PRK13616        350 GNITSAALSRSG--RQVAAVVTLGRGAPDPASSLWVGPLGGVAVQ--VLEG--HSLTRPSWSLDADAV-WVVVDG-NTVV  421 (591)
T ss_pred             cCcccceECCCC--CEEEEEEeecCCCCCcceEEEEEeCCCccee--eecC--CCCCCceECCCCCce-EEEecC-cceE
Confidence            356788889984  3333332      244334454333322211  1222  237788999996311 110000 0001


Q ss_pred             eeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceE---
Q 036510          177 KLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKV---  253 (288)
Q Consensus       177 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~---  253 (288)
                      ++......+.+.+.++..+.    .. .  .....|.++.||||+    ..+|... ++.|.+=-+...... +..+   
T Consensus       422 ~v~~~~~~gql~~~~vd~ge----~~-~--~~~g~Issl~wSpDG----~RiA~i~-~g~v~Va~Vvr~~~G-~~~l~~~  488 (591)
T PRK13616        422 RVIRDPATGQLARTPVDASA----VA-S--RVPGPISELQLSRDG----VRAAMII-GGKVYLAVVEQTEDG-QYALTNP  488 (591)
T ss_pred             EEeccCCCceEEEEeccCch----hh-h--ccCCCcCeEEECCCC----CEEEEEE-CCEEEEEEEEeCCCC-ceeeccc
Confidence            11112223344444554431    10 0  234469999999985    5566555 466766443332111 1111   


Q ss_pred             ---eeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          254 ---LHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       254 ---~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                         .......+.++.|.++++++ ++..++...+|.
T Consensus       489 ~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~  523 (591)
T PRK13616        489 REVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWY  523 (591)
T ss_pred             EEeecccCCccccceEecCCEEE-EEecCCCCceEE
Confidence               12233456889999999965 555555556665

>PHA02790 Kelch-like protein; Provisional

Probab=93.76  E-value=5.5  Score=36.64  Aligned_cols=109  Identities=8%  Similarity=0.089  Sum_probs=51.7

Q ss_pred             CCCEEEEeeCCC-----cEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC--CcEEEeecCCCCceEE
Q 036510           22 YGKRLATASSDY-----SIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD--GTVIIWKEGNSNEWIK   94 (288)
Q Consensus        22 ~g~~l~s~~~d~-----~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d--~~v~iwd~~~~~~~~~   94 (288)
                      ++..++.||.++     ++..||........+..+.........+..    ++.+.+.|+.+  .++..||... +.|..
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~----~~~iYviGG~~~~~sve~ydp~~-n~W~~  345 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA----NNKLYVVGGLPNPTSVERWFHGD-AAWVN  345 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE----CCEEEEECCcCCCCceEEEECCC-CeEEE
Confidence            355667777543     455666543322222222211111122222    26777777754  4577787654 44544


Q ss_pred             eEEeecCCCceeEEEeccCCCCeEEEEEeCCC---cEEEEeecCCCCee
Q 036510           95 DHVFEDHKSSVNSIDWAPHELGLCLACGSSDG---NISVFTARADGGWD  140 (288)
Q Consensus        95 ~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~---~i~i~d~~~~~~~~  140 (288)
                      ...++..+.....+..  +  +.+.+.||.++   .+..||.+++ .|.
T Consensus       346 ~~~l~~~r~~~~~~~~--~--g~IYviGG~~~~~~~ve~ydp~~~-~W~  389 (480)
T PHA02790        346 MPSLLKPRCNPAVASI--N--NVIYVIGGHSETDTTTEYLLPNHD-QWQ  389 (480)
T ss_pred             CCCCCCCCcccEEEEE--C--CEEEEecCcCCCCccEEEEeCCCC-EEE
Confidence            3333222211122222  2  56667776543   4667877643 353

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=93.68  E-value=3.5  Score=34.21  Aligned_cols=210  Identities=12%  Similarity=0.187  Sum_probs=104.0

Q ss_pred             EEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEE
Q 036510           50 KLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNIS  129 (288)
Q Consensus        50 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~  129 (288)
                      .+.+-...+.+|+|.++ .+.+++.....+.|.-.+. ++. ......+.+ -+..-.|.+..+  +.++++-..++.+.
T Consensus        16 ~l~g~~~e~SGLTy~pd-~~tLfaV~d~~~~i~els~-~G~-vlr~i~l~g-~~D~EgI~y~g~--~~~vl~~Er~~~L~   89 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPD-TGTLFAVQDEPGEIYELSL-DGK-VLRRIPLDG-FGDYEGITYLGN--GRYVLSEERDQRLY   89 (248)
T ss_dssp             E-TT--S-EEEEEEETT-TTEEEEEETTTTEEEEEET-T---EEEEEE-SS--SSEEEEEE-ST--TEEEEEETTTTEEE
T ss_pred             ECCCccCCccccEEcCC-CCeEEEEECCCCEEEEEcC-CCC-EEEEEeCCC-CCCceeEEEECC--CEEEEEEcCCCcEE
Confidence            34455566899999865 3556666677777766664 333 322223333 245677877654  56666666789999


Q ss_pred             EEeecCCCC-eeeE-----E--eeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeC--Cceee
Q 036510          130 VFTARADGG-WDTS-----R--IDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYN--GIWKM  199 (288)
Q Consensus       130 i~d~~~~~~-~~~~-----~--~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~  199 (288)
                      ++++..... ....     .  ....++..+.-++|+|..              +.|..+-+....+|+.+..  .....
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~--------------~~L~v~kE~~P~~l~~~~~~~~~~~~  155 (248)
T PF06977_consen   90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT--------------NRLFVAKERKPKRLYEVNGFPGGFDL  155 (248)
T ss_dssp             EEEE----TT--EEEEEEEE---S---SS--EEEEEETTT--------------TEEEEEEESSSEEEEEEESTT-SS--
T ss_pred             EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCC--------------CEEEEEeCCCChhhEEEccccCccce
Confidence            998844221 1111     1  111345668889998876              4455556666677777754  11111


Q ss_pred             eeee--c---cccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEe-eccc------cCeEEEEee
Q 036510          200 DCFP--A---LQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVL-HDFK------TPVYRVSWS  267 (288)
Q Consensus       200 ~~~~--~---~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~-~~~~------~~i~~~~~s  267 (288)
                      ....  .   ......-+.++.++|..   +.+++-....+.|...|.+-  .......+ .+..      ...-.++|.
T Consensus       156 ~~~~~~~~~~~~~~~~d~S~l~~~p~t---~~lliLS~es~~l~~~d~~G--~~~~~~~L~~g~~gl~~~~~QpEGIa~d  230 (248)
T PF06977_consen  156 FVSDDQDLDDDKLFVRDLSGLSYDPRT---GHLLILSDESRLLLELDRQG--RVVSSLSLDRGFHGLSKDIPQPEGIAFD  230 (248)
T ss_dssp             EEEE-HHHH-HT--SS---EEEEETTT---TEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-
T ss_pred             eeccccccccccceeccccceEEcCCC---CeEEEEECCCCeEEEECCCC--CEEEEEEeCCcccCcccccCCccEEEEC
Confidence            1000  1   11223347889999974   56777777788888887432  11111111 1111      135679999


Q ss_pred             cCCCEEEEEeCCCcEEEe
Q 036510          268 LTGNILAVADGNNNVTLW  285 (288)
Q Consensus       268 pdg~~l~s~~~d~~v~~w  285 (288)
                      |+|++.+++ +.+...++
T Consensus       231 ~~G~LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  231 PDGNLYIVS-EPNLFYRF  247 (248)
T ss_dssp             TT--EEEEE-TTTEEEEE
T ss_pred             CCCCEEEEc-CCceEEEe
Confidence            999877665 55655444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=93.60  E-value=4.1  Score=36.77  Aligned_cols=113  Identities=20%  Similarity=0.238  Sum_probs=63.0

Q ss_pred             ceEEEEEcCCCCEEEEee---CC-CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEE-EEeeCCCcEEEeec-
Q 036510           13 TVHDVAMDYYGKRLATAS---SD-YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSIL-ASCSFDGTVIIWKE-   86 (288)
Q Consensus        13 ~v~~~~~s~~g~~l~s~~---~d-~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~d~~v~iwd~-   86 (288)
                      .+..-+|+|+++.++-..   .. ..+.+++++.+..+.+.++.++..   ..+|+++  |+.| .+...|+...||-+ 
T Consensus       194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~---~P~fspD--G~~l~f~~~rdg~~~iy~~d  268 (425)
T COG0823         194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG---APAFSPD--GSKLAFSSSRDGSPDIYLMD  268 (425)
T ss_pred             ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC---CccCCCC--CCEEEEEECCCCCccEEEEc
Confidence            334446888886654332   22 357778887665566666666654   4678876  5544 56667888877744 


Q ss_pred             -CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecC
Q 036510           87 -GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA  135 (288)
Q Consensus        87 -~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~  135 (288)
                       .....    ..+..-.+.-..=.|+|++. .++.+.+..|.-.||-...
T Consensus       269 l~~~~~----~~Lt~~~gi~~~Ps~spdG~-~ivf~Sdr~G~p~I~~~~~  313 (425)
T COG0823         269 LDGKNL----PRLTNGFGINTSPSWSPDGS-KIVFTSDRGGRPQIYLYDL  313 (425)
T ss_pred             CCCCcc----eecccCCccccCccCCCCCC-EEEEEeCCCCCcceEEECC
Confidence             33221    11222222222457889853 3344456666666665443

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.53  E-value=0.52  Score=42.66  Aligned_cols=102  Identities=14%  Similarity=0.237  Sum_probs=63.3

Q ss_pred             eEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCC----CCcEEEEEeCCCcEEEEEeecCCC-cccce
Q 036510          178 LCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGL----PKSTIASASEDGKVIIWTVAREGD-QWEGK  252 (288)
Q Consensus       178 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~----~~~~l~s~s~D~~i~iw~~~~~~~-~~~~~  252 (288)
                      |.++..-..++-.|++.|    +.+.+..-|++ |+-+.+.|+.+.    +.++| .|-+|+.|.-||++.... .....
T Consensus       349 l~~~~~~~~l~klDIE~G----KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~Tl-vGLs~n~vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERG----KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTL-VGLSDNSVFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             eeCCCCcCcceeeecccc----eeeeEeeccCC-cceeeccCCcchhcccccccE-EeecCCceEEecccccCcceeeee
Confidence            335566666888888887    56667777777 788888887632    12333 467788899999885321 11111


Q ss_pred             Eeecccc--CeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          253 VLHDFKT--PVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       253 ~~~~~~~--~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      ..+++..  .-.|.+=..+ -+|++||.+|.|||||
T Consensus       423 q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYd  457 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYD  457 (644)
T ss_pred             eccccccccccceeeecCC-ceEEEeecCCcEEeeh
Confidence            1233322  1222232223 4678899999999998

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.34  E-value=0.084  Score=50.44  Aligned_cols=126  Identities=16%  Similarity=0.212  Sum_probs=68.0

Q ss_pred             ecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecC-CCCee---eEEeeccCCCCeeEEEeCCCCCCCceecccccCC
Q 036510           99 EDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA-DGGWD---TSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDP  174 (288)
Q Consensus        99 ~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~-~~~~~---~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~  174 (288)
                      ++..+.|.-+.|---...+. +  ..-|.+.+|++.. .+.++   .++........+..+.|+|--.           +
T Consensus       129 kgf~G~v~dl~fah~~~pk~-~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~-----------~  194 (1283)
T KOG1916|consen  129 KGFPGGVGDLQFAHTKCPKG-R--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAV-----------N  194 (1283)
T ss_pred             hcCCCCcccccccccCChHH-H--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeeccccc-----------c
Confidence            45556666666632111111 1  3336788998764 12222   1222222333456778877532           2


Q ss_pred             CceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCC-------CCCcEEEEEeCCCcEEEEEee
Q 036510          175 VQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLG-------LPKSTIASASEDGKVIIWTVA  243 (288)
Q Consensus       175 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~-------~~~~~l~s~s~D~~i~iw~~~  243 (288)
                      ..+++-+-.++.|++..+....     ..-+.+|..++..++|...+.       .+++.||.++.||.++.|-+.
T Consensus       195 ~~~ic~~~~~~~i~lL~~~ra~-----~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  195 KVYICYGLKGGEIRLLNINRAL-----RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             cceeeeccCCCceeEeeechHH-----HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence            2567778888889887765532     123455777777765544321       124566666666666666554

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=93.33  E-value=5.9  Score=35.64  Aligned_cols=48  Identities=23%  Similarity=0.358  Sum_probs=34.7

Q ss_pred             cEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecC
Q 036510           34 SIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEG   87 (288)
Q Consensus        34 ~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~   87 (288)
                      .|++|+..+   ..+.++.=-.+.+..+.|+.   .+.|+....||+++++|+.
T Consensus        62 ~I~iys~sG---~ll~~i~w~~~~iv~~~wt~---~e~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   62 SIQIYSSSG---KLLSSIPWDSGRIVGMGWTD---DEELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             EEEEECCCC---CEeEEEEECCCCEEEEEECC---CCeEEEEEcCCEEEEEeCC
Confidence            488887643   34444432237899999974   4678888999999999985

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.32  E-value=4.4  Score=34.15  Aligned_cols=55  Identities=20%  Similarity=0.190  Sum_probs=40.5

Q ss_pred             EEcCCCCEEEEeeCC-----CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEe
Q 036510           18 AMDYYGKRLATASSD-----YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASC   75 (288)
Q Consensus        18 ~~s~~g~~l~s~~~d-----~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~   75 (288)
                      .|||||++|.+.=+|     |.|-|||.. ...+.+..+..|.-.-..+.+..|  |++++.+
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~D--Grtlvva  179 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMAD--GRTLVVA  179 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecc-cccceecccccCCcCcceeEEecC--CcEEEEe
Confidence            489999999887665     668899986 345667777777766677888754  7777754

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.32  E-value=0.3  Score=28.28  Aligned_cols=29  Identities=21%  Similarity=0.241  Sum_probs=23.8

Q ss_pred             CeEEEEeecCC---CEEEEEeCCCcEEEeEcC
Q 036510          260 PVYRVSWSLTG---NILAVADGNNNVTLWEEA  288 (288)
Q Consensus       260 ~i~~~~~spdg---~~l~s~~~d~~v~~w~~~  288 (288)
                      .+.+++|||+.   .+|+.+-.-+.|+|+|++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R   33 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR   33 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence            47889999865   488888888999999963

It contains a characteristic DLL sequence motif.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=93.27  E-value=5.7  Score=35.31  Aligned_cols=155  Identities=17%  Similarity=0.177  Sum_probs=87.4

Q ss_pred             eeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEee--
Q 036510          105 VNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGG--  182 (288)
Q Consensus       105 v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~--  182 (288)
                      -..+++++.. .+..+....++.|.+.|............  +  ..-..+.++|++.             .+.++-.  
T Consensus        76 p~~i~v~~~~-~~vyv~~~~~~~v~vid~~~~~~~~~~~v--G--~~P~~~~~~~~~~-------------~vYV~n~~~  137 (381)
T COG3391          76 PAGVAVNPAG-NKVYVTTGDSNTVSVIDTATNTVLGSIPV--G--LGPVGLAVDPDGK-------------YVYVANAGN  137 (381)
T ss_pred             ccceeeCCCC-CeEEEecCCCCeEEEEcCcccceeeEeee--c--cCCceEEECCCCC-------------EEEEEeccc
Confidence            3567777764 44566666678899998654432221111  1  1345677777762             2333333  


Q ss_pred             cCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceE--eeccccC
Q 036510          183 CDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKV--LHDFKTP  260 (288)
Q Consensus       183 ~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~--~~~~~~~  260 (288)
                      .++++.+.|..++.    .......-..+ ..+.+.|++   ....++-..++.|.+.|.+..... ....  .-.....
T Consensus       138 ~~~~vsvid~~t~~----~~~~~~vG~~P-~~~a~~p~g---~~vyv~~~~~~~v~vi~~~~~~v~-~~~~~~~~~~~~~  208 (381)
T COG3391         138 GNNTVSVIDAATNK----VTATIPVGNTP-TGVAVDPDG---NKVYVTNSDDNTVSVIDTSGNSVV-RGSVGSLVGVGTG  208 (381)
T ss_pred             CCceEEEEeCCCCe----EEEEEecCCCc-ceEEECCCC---CeEEEEecCCCeEEEEeCCCccee-ccccccccccCCC
Confidence            36778777776552    22222111233 788999985   234555567999999996643211 0000  0111223


Q ss_pred             eEEEEeecCCCEEEEEeCC---CcEEEeE
Q 036510          261 VYRVSWSLTGNILAVADGN---NNVTLWE  286 (288)
Q Consensus       261 i~~~~~spdg~~l~s~~~d---~~v~~w~  286 (288)
                      ...+.++|||+++.+....   +++...|
T Consensus       209 P~~i~v~~~g~~~yV~~~~~~~~~v~~id  237 (381)
T COG3391         209 PAGIAVDPDGNRVYVANDGSGSNNVLKID  237 (381)
T ss_pred             CceEEECCCCCEEEEEeccCCCceEEEEe
Confidence            4678999999987777554   3666555

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.12  E-value=6.6  Score=35.66  Aligned_cols=176  Identities=14%  Similarity=0.185  Sum_probs=82.5

Q ss_pred             cccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEE-e
Q 036510           54 HKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVF-T  132 (288)
Q Consensus        54 h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~-d  132 (288)
                      ..-....+.++|.  |+.++. ..||.-.|+....   +.. ..    .+......|.+.  +. +|+-...++|.++ +
T Consensus        31 ~~~~p~~ls~npn--gr~v~V-~g~geY~iyt~~~---~r~-k~----~G~g~~~vw~~~--n~-yAv~~~~~~I~I~kn   96 (443)
T PF04053_consen   31 CEIYPQSLSHNPN--GRFVLV-CGDGEYEIYTALA---WRN-KA----FGSGLSFVWSSR--NR-YAVLESSSTIKIYKN   96 (443)
T ss_dssp             -SS--SEEEE-TT--SSEEEE-EETTEEEEEETTT---TEE-EE----EEE-SEEEE-TS--SE-EEEE-TTS-EEEEET
T ss_pred             CCcCCeeEEECCC--CCEEEE-EcCCEEEEEEccC---Ccc-cc----cCceeEEEEecC--cc-EEEEECCCeEEEEEc
Confidence            3444567888753  555555 6678888876322   111 11    235677888874  44 5555557888886 2


Q ss_pred             ecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcce
Q 036510          133 ARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWV  212 (288)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V  212 (288)
                      +.... .....    .+..+..|--                 +.+|...+ ++.|.+||..++    +.+..+..  ..|
T Consensus        97 ~~~~~-~k~i~----~~~~~~~If~-----------------G~LL~~~~-~~~i~~yDw~~~----~~i~~i~v--~~v  147 (443)
T PF04053_consen   97 FKNEV-VKSIK----LPFSVEKIFG-----------------GNLLGVKS-SDFICFYDWETG----KLIRRIDV--SAV  147 (443)
T ss_dssp             TEE-T-T---------SS-EEEEE------------------SSSEEEEE-TTEEEEE-TTT------EEEEESS---E-
T ss_pred             Ccccc-ceEEc----CCcccceEEc-----------------CcEEEEEC-CCCEEEEEhhHc----ceeeEEec--CCC
Confidence            22111 00000    0112233311                 24555554 448999999876    33444332  238


Q ss_pred             EEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC------C--CcccceEeeccccCeEEEEeecCCCEEEEEeCC
Q 036510          213 RDVAWAPNLGLPKSTIASASEDGKVIIWTVARE------G--DQWEGKVLHDFKTPVYRVSWSLTGNILAVADGN  279 (288)
Q Consensus       213 ~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~------~--~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d  279 (288)
                      ..|.|++++    .++|-.+.| ++.|.+.+..      .  .......+++....|.+..|..|  .|+.....
T Consensus       148 k~V~Ws~~g----~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~  215 (443)
T PF04053_consen  148 KYVIWSDDG----ELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN  215 (443)
T ss_dssp             EEEEE-TTS----SEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT
T ss_pred             cEEEEECCC----CEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC
Confidence            999999984    567766655 6777765432      0  00022445555567778888655  55544443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.02  E-value=0.18  Score=48.37  Aligned_cols=182  Identities=15%  Similarity=0.213  Sum_probs=100.3

Q ss_pred             EeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCC--CC--ceEEeEEeecCCCceeEEEeccCCC-CeEEEEEeCC
Q 036510           51 LSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN--SN--EWIKDHVFEDHKSSVNSIDWAPHEL-GLCLACGSSD  125 (288)
Q Consensus        51 ~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~--~~--~~~~~~~~~~h~~~v~~l~~~p~~~-~~~l~sg~~d  125 (288)
                      +.|..+.|-.+.|.+... ..+.  -.-|..-+|++..  ++  +-..++........+.-+.|+|--. ..++..+-.+
T Consensus       128 ~kgf~G~v~dl~fah~~~-pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~  204 (1283)
T KOG1916|consen  128 AKGFPGGVGDLQFAHTKC-PKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG  204 (1283)
T ss_pred             HhcCCCCcccccccccCC-hHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence            345667788888876422 2222  2336777888643  21  1112233323334456677776432 3456666777


Q ss_pred             CcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEe-CCceeeeeeec
Q 036510          126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLY-NGIWKMDCFPA  204 (288)
Q Consensus       126 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~  204 (288)
                      +.+++....+...    ....+|...++.++|...+   .+....+..++..|+....||.++.|-+. ++.....|.+.
T Consensus       205 ~~i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g---~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhe  277 (1283)
T KOG1916|consen  205 GEIRLLNINRALR----SLFRSHSQRVTDMAFFAEG---VLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHE  277 (1283)
T ss_pred             CceeEeeechHHH----HHHHhcCCCcccHHHHhhc---hhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhc
Confidence            8888866543211    2223476666666554432   22333455667899999999999999874 34434456666


Q ss_pred             cccCCc-c-eEEEEecCCCCC-----CCcEEEEEeC-CCcEEEEEee
Q 036510          205 LQMHTD-W-VRDVAWAPNLGL-----PKSTIASASE-DGKVIIWTVA  243 (288)
Q Consensus       205 ~~~h~~-~-V~~v~~sp~~~~-----~~~~l~s~s~-D~~i~iw~~~  243 (288)
                      .+-|+. + |... ++.+...     -...++++++ ...+++|...
T Consensus       278 wkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a  323 (1283)
T KOG1916|consen  278 WKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEA  323 (1283)
T ss_pred             cCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeecc
Confidence            666662 2 3222 3332211     1234556655 5578888653

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=92.95  E-value=4.8  Score=33.55  Aligned_cols=143  Identities=16%  Similarity=0.185  Sum_probs=75.1

Q ss_pred             ceEEEEEcCCCCEEEEee-CCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee-cCCCC
Q 036510           13 TVHDVAMDYYGKRLATAS-SDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK-EGNSN   90 (288)
Q Consensus        13 ~v~~~~~s~~g~~l~s~~-~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd-~~~~~   90 (288)
                      .+.+.+++++|+.++... .++.-.||-..... .....+.+.  .+..-.|+++  +.+.+....+...+++. ...+.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~-~~~~~~~g~--~l~~PS~d~~--g~~W~v~~~~~~~~~~~~~~~g~   99 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG-PVRPVLTGG--SLTRPSWDPD--GWVWTVDDGSGGVRVVRDSASGT   99 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC-cceeeccCC--ccccccccCC--CCEEEEEcCCCceEEEEecCCCc
Confidence            567889999998776655 23333444332221 111112333  5667788754  66666666666767763 22222


Q ss_pred             ceEEeEEeecCCCceeEEEeccCCCCeEEEEE--eCCCcEEEEeecCCCCe---e---eEEeeccCCCCeeEEEeCCCC
Q 036510           91 EWIKDHVFEDHKSSVNSIDWAPHELGLCLACG--SSDGNISVFTARADGGW---D---TSRIDQAHPVGVTSVSWAPST  161 (288)
Q Consensus        91 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg--~~d~~i~i~d~~~~~~~---~---~~~~~~~~~~~v~~i~~~p~~  161 (288)
                      ..........-...|..++++||+. ++++..  ..++.|.+--+..+..-   .   ...........+..+.|.++.
T Consensus       100 ~~~~~v~~~~~~~~I~~l~vSpDG~-RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~  177 (253)
T PF10647_consen  100 GEPVEVDWPGLRGRITALRVSPDGT-RVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS  177 (253)
T ss_pred             ceeEEecccccCCceEEEEECCCCc-EEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence            1111111111122899999999953 322222  34567777655432211   1   111122234568899999886

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.91  E-value=0.49  Score=46.28  Aligned_cols=101  Identities=19%  Similarity=0.257  Sum_probs=64.3

Q ss_pred             CCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCC
Q 036510           23 GKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHK  102 (288)
Q Consensus        23 g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~  102 (288)
                      +..++.|+.-|.+-+.|+.+.- .++.+-..-.++|.+++|+.  +|..++.|-.+|.|.+||+..++   ..+.+..|.
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL-~~~~~ne~v~~~Vtsvafn~--dg~~l~~G~~~G~V~v~D~~~~k---~l~~i~e~~  172 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNL-GPLHQNERVQGPVTSVAFNQ--DGSLLLAGLGDGHVTVWDMHRAK---ILKVITEHG  172 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhccc-chhhcCCccCCcceeeEecC--CCceeccccCCCcEEEEEccCCc---ceeeeeecC
Confidence            4456666666777777764321 11222223358899999975  48999999999999999998765   334555566


Q ss_pred             CceeEEEec---cCCCCeEEEEEeCCCcEEEEee
Q 036510          103 SSVNSIDWA---PHELGLCLACGSSDGNISVFTA  133 (288)
Q Consensus       103 ~~v~~l~~~---p~~~~~~l~sg~~d~~i~i~d~  133 (288)
                      .+..++-++   .+  +..+.++...|.  +|..
T Consensus       173 ap~t~vi~v~~t~~--nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  173 APVTGVIFVGRTSQ--NSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CccceEEEEEEeCC--CcEEEEccCCCc--eEEE
Confidence            666655432   22  225666766665  5554

>PHA03098 kelch-like protein; Provisional

Probab=92.88  E-value=8  Score=35.99  Aligned_cols=62  Identities=16%  Similarity=0.279  Sum_probs=30.8

Q ss_pred             CCEEEEeeCC-----CcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC------CcEEEEeecC
Q 036510           69 GSILASCSFD-----GTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD------GNISVFTARA  135 (288)
Q Consensus        69 ~~~l~s~s~d-----~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d------~~i~i~d~~~  135 (288)
                      +.+++.|+.+     ..+..||..+ +.|.....++..+.. .++... +  +.+.+.||.+      +.+..||+.+
T Consensus       343 ~~lyv~GG~~~~~~~~~v~~yd~~~-~~W~~~~~lp~~r~~-~~~~~~-~--~~iYv~GG~~~~~~~~~~v~~yd~~t  415 (534)
T PHA03098        343 NRIYVIGGIYNSISLNTVESWKPGE-SKWREEPPLIFPRYN-PCVVNV-N--NLIYVIGGISKNDELLKTVECFSLNT  415 (534)
T ss_pred             CEEEEEeCCCCCEecceEEEEcCCC-CceeeCCCcCcCCcc-ceEEEE-C--CEEEEECCcCCCCcccceEEEEeCCC
Confidence            6677777765     3466777754 345433222211111 122211 2  4556666532      3567777764

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.87  E-value=0.42  Score=27.69  Aligned_cols=33  Identities=18%  Similarity=0.341  Sum_probs=26.4

Q ss_pred             CceeEEEeccCCC-CeEEEEEeCCCcEEEEeecC
Q 036510          103 SSVNSIDWAPHEL-GLCLACGSSDGNISVFTARA  135 (288)
Q Consensus       103 ~~v~~l~~~p~~~-~~~l~sg~~d~~i~i~d~~~  135 (288)
                      +.|.++.|+|.+. ..+|+....-+.+.++|+|+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            3688999998652 26788888889999999985

It contains a characteristic DLL sequence motif.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=92.84  E-value=2.6  Score=40.23  Aligned_cols=111  Identities=16%  Similarity=0.104  Sum_probs=67.0

Q ss_pred             cCCCceeEEeecCCcEEEEEEeCCc-------------ee---eeeeeccccCCcceEEEEec--CCCCCCCcEEEEEeC
Q 036510          172 LDPVQKLCSGGCDNTVKVWKLYNGI-------------WK---MDCFPALQMHTDWVRDVAWA--PNLGLPKSTIASASE  233 (288)
Q Consensus       172 ~~~~~~l~s~~~d~~i~iwd~~~~~-------------~~---~~~~~~~~~h~~~V~~v~~s--p~~~~~~~~l~s~s~  233 (288)
                      +-....|+.+..||.|.+|.+..-.             ..   .++...+. ....++.++++  ..    .++||.++.
T Consensus       111 lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~----~rlIAVSsN  185 (717)
T PF08728_consen  111 LGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKK----SRLIAVSSN  185 (717)
T ss_pred             cCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCc----ceEEEEecC
Confidence            3345678999999999999763100             00   00111112 22357888888  43    256777777


Q ss_pred             CCcEEEEEeecCCCcccceEeeccccCeEEEEeecCC---C---EEEEEeCCCcEEEeEc
Q 036510          234 DGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTG---N---ILAVADGNNNVTLWEE  287 (288)
Q Consensus       234 D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg---~---~l~s~~~d~~v~~w~~  287 (288)
                      -..|.||-............-+.+...|.+|+|-++.   .   .+++++-.|.+.+|++
T Consensus       186 s~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  186 SQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             CceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            7788888765421111111112344568888888754   2   7888899999998875

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=92.75  E-value=6  Score=37.44  Aligned_cols=104  Identities=14%  Similarity=0.306  Sum_probs=58.9

Q ss_pred             CeEEEEEeCCCcEEEEeecCCCCeeeEEeec--cCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEE-
Q 036510          116 GLCLACGSSDGNISVFTARADGGWDTSRIDQ--AHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKL-  192 (288)
Q Consensus       116 ~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-  192 (288)
                      ++..+.-+....+.|||.+...    ....+  .....|..++|.....            ++.+.+.|..+.|.++-- 
T Consensus        41 ~k~a~V~~~~~~LtIWD~~~~~----lE~~~~f~~~~~I~dLDWtst~d------------~qsiLaVGf~~~v~l~~Q~  104 (631)
T PF12234_consen   41 KKIAVVDSSRSELTIWDTRSGV----LEYEESFSEDDPIRDLDWTSTPD------------GQSILAVGFPHHVLLYTQL  104 (631)
T ss_pred             CcEEEEECCCCEEEEEEcCCcE----EEEeeeecCCCceeeceeeecCC------------CCEEEEEEcCcEEEEEEcc
Confidence            3433334444589999998653    11112  2356799999965431            256667777888887643 


Q ss_pred             ----eC--Cce-eeeeeeccccCC-cceEEEEecCCCCCCCcEEEEEeCCCcEEEEEe
Q 036510          193 ----YN--GIW-KMDCFPALQMHT-DWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV  242 (288)
Q Consensus       193 ----~~--~~~-~~~~~~~~~~h~-~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~  242 (288)
                          ..  ..+ .++.+ .+..|. ++|.+..|-+++     .|+.|+ ++.+.|++-
T Consensus       105 R~dy~~~~p~w~~i~~i-~i~~~T~h~Igds~Wl~~G-----~LvV~s-GNqlfv~dk  155 (631)
T PF12234_consen  105 RYDYTNKGPSWAPIRKI-DISSHTPHPIGDSIWLKDG-----TLVVGS-GNQLFVFDK  155 (631)
T ss_pred             chhhhcCCcccceeEEE-EeecCCCCCccceeEecCC-----eEEEEe-CCEEEEECC
Confidence                11  111 11111 123344 469999999974     444444 346777764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=92.74  E-value=5.1  Score=33.36  Aligned_cols=154  Identities=19%  Similarity=0.214  Sum_probs=80.6

Q ss_pred             ceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeec
Q 036510          104 SVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC  183 (288)
Q Consensus       104 ~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~  183 (288)
                      .+.+.++++++. .+++....++.-.+|-.+.++.....  ..+  ..+...+|++++              .+......
T Consensus        25 ~~~s~AvS~dg~-~~A~v~~~~~~~~L~~~~~~~~~~~~--~~g--~~l~~PS~d~~g--------------~~W~v~~~   85 (253)
T PF10647_consen   25 DVTSPAVSPDGS-RVAAVSEGDGGRSLYVGPAGGPVRPV--LTG--GSLTRPSWDPDG--------------WVWTVDDG   85 (253)
T ss_pred             cccceEECCCCC-eEEEEEEcCCCCEEEEEcCCCcceee--ccC--CccccccccCCC--------------CEEEEEcC
Confidence            578889999852 33333323444445544444332221  122  257778888875              33333333


Q ss_pred             CCcEEEEE-EeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEe---CCCcEEEEEeecCCCc---ccc---eE
Q 036510          184 DNTVKVWK-LYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASAS---EDGKVIIWTVAREGDQ---WEG---KV  253 (288)
Q Consensus       184 d~~i~iwd-~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s---~D~~i~iw~~~~~~~~---~~~---~~  253 (288)
                      +...+++. ...+......+.... -...|.++.+|||+    ..+|...   .++.|.+=-+......   ...   ..
T Consensus        86 ~~~~~~~~~~~~g~~~~~~v~~~~-~~~~I~~l~vSpDG----~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~  160 (253)
T PF10647_consen   86 SGGVRVVRDSASGTGEPVEVDWPG-LRGRITALRVSPDG----TRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRV  160 (253)
T ss_pred             CCceEEEEecCCCcceeEEecccc-cCCceEEEEECCCC----cEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEe
Confidence            44455552 222211111111111 11179999999985    4555544   4577877766543221   000   11


Q ss_pred             eeccccCeEEEEeecCCCEEEEEeCCCc
Q 036510          254 LHDFKTPVYRVSWSLTGNILAVADGNNN  281 (288)
Q Consensus       254 ~~~~~~~i~~~~~spdg~~l~s~~~d~~  281 (288)
                      .......+..++|.+++++++.+...+.
T Consensus       161 ~~~~~~~v~~v~W~~~~~L~V~~~~~~~  188 (253)
T PF10647_consen  161 APPLLSDVTDVAWSDDSTLVVLGRSAGG  188 (253)
T ss_pred             cccccCcceeeeecCCCEEEEEeCCCCC
Confidence            1122357899999999998887765443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.50  E-value=4  Score=36.57  Aligned_cols=64  Identities=14%  Similarity=0.102  Sum_probs=31.1

Q ss_pred             cceEEEEecCCCCCCCcEEEEEe-CCCcEEEEEeecCCCcccceEee-c---------------cccCeEEEEeecCCCE
Q 036510          210 DWVRDVAWAPNLGLPKSTIASAS-EDGKVIIWTVAREGDQWEGKVLH-D---------------FKTPVYRVSWSLTGNI  272 (288)
Q Consensus       210 ~~V~~v~~sp~~~~~~~~l~s~s-~D~~i~iw~~~~~~~~~~~~~~~-~---------------~~~~i~~~~~spdg~~  272 (288)
                      .-|.++..|.|.    ++|=..+ .+|.||.||++....+.....+. +               ..+...-+..|.||++
T Consensus       312 ~LitDI~iSlDD----rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkR  387 (461)
T PF05694_consen  312 PLITDILISLDD----RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKR  387 (461)
T ss_dssp             -----EEE-TTS-----EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSE
T ss_pred             CceEeEEEccCC----CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeE
Confidence            447888898873    4444444 59999999999865442211111 0               0111245788899999


Q ss_pred             EEEEe
Q 036510          273 LAVAD  277 (288)
Q Consensus       273 l~s~~  277 (288)
                      |.+..
T Consensus       388 lYvTn  392 (461)
T PF05694_consen  388 LYVTN  392 (461)
T ss_dssp             EEEE-
T ss_pred             EEEEe
Confidence            88774

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=92.02  E-value=12  Score=35.95  Aligned_cols=125  Identities=14%  Similarity=0.137  Sum_probs=73.7

Q ss_pred             CeEEEEecCCCCCCEEEEeeCCCcEEEeecCC-------C---Cc--e-----EEeEEeecCCCceeEEEeccCCCCeEE
Q 036510           57 AVWEVAWAHPKFGSILASCSFDGTVIIWKEGN-------S---NE--W-----IKDHVFEDHKSSVNSIDWAPHELGLCL  119 (288)
Q Consensus        57 ~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~-------~---~~--~-----~~~~~~~~h~~~v~~l~~~p~~~~~~l  119 (288)
                      .|+.+....-...++|+.|.+||.|.+|....       .   ..  .     .+...+. ....+++|+++-....+++
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI  180 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI  180 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence            35666544323467999999999999996521       0   00  0     0001111 2347899999822336788


Q ss_pred             EEEeCCCcEEEEeecCC-CCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCC-ceeEEeecCCcEEEEEE
Q 036510          120 ACGSSDGNISVFTARAD-GGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPV-QKLCSGGCDNTVKVWKL  192 (288)
Q Consensus       120 ~sg~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~  192 (288)
                      |++++...|.||-.... ...... ....|.-.|-+|+|-++.....         + ..++..+..|.+-+|++
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~~~~-~s~~~~hNIP~VSFl~~~~d~~---------G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERFYHV-PSHQHSHNIPNVSFLDDDLDPN---------GHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEecCCceEEEEEEeccccccccc-cccccccCCCeeEeecCCCCCc---------cceEEEEEeccCcEEEEEE
Confidence            98988889988876542 111111 0112333477888876652111         1 25777888999888887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.72  E-value=2.6  Score=37.74  Aligned_cols=124  Identities=13%  Similarity=0.196  Sum_probs=75.2

Q ss_pred             ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCcee--eEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510            7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQH--LAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW   84 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw   84 (288)
                      ..--+++|.+++||+|.+.||.--.|++|.+.+........  .+.-...+..|.+.+|++   +.-+|..+..| +-+|
T Consensus        62 dm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~---s~e~A~i~~~G-~e~y  137 (657)
T KOG2377|consen   62 DMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS---STEIAFITDQG-IEFY  137 (657)
T ss_pred             eecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec---CeeEEEEecCC-eEEE
Confidence            33456799999999999999999999999999874322111  112223456688899985   34555544433 4455


Q ss_pred             ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCC
Q 036510           85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARAD  136 (288)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~  136 (288)
                      ......  ...+..+.|.-.|+.-.|+++..-.+|+++-..+++.=+.++.+
T Consensus       138 ~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  138 QVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             EEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence            432211  12233445777888899998743334444445555555555443

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.22  E-value=1.5  Score=43.52  Aligned_cols=103  Identities=14%  Similarity=0.092  Sum_probs=66.2

Q ss_pred             eEEeecCCcEEEEEEeCCcee----eeeee---ccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCccc
Q 036510          178 LCSGGCDNTVKVWKLYNGIWK----MDCFP---ALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWE  250 (288)
Q Consensus       178 l~s~~~d~~i~iwd~~~~~~~----~~~~~---~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~  250 (288)
                      ++..+.+..|..+|+++-...    ...+.   ........+.++.|+|.-   +...|....|+.|++..+......  
T Consensus       117 v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v---p~n~av~l~dlsl~V~~~~~~~~~--  191 (1405)
T KOG3630|consen  117 VVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV---PLNSAVDLSDLSLRVKSTKQLAQN--  191 (1405)
T ss_pred             EEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCc---cchhhhhccccchhhhhhhhhhhh--
Confidence            344444557889998642100    01011   111223356788999974   457888999999999877642111  


Q ss_pred             ceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          251 GKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       251 ~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                       .....+....++++|+|.|++++.|-.+|++.=|.
T Consensus       192 -v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~  226 (1405)
T KOG3630|consen  192 -VTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYE  226 (1405)
T ss_pred             -hcccCcccceeeEEeccccceeeEecCCCeEEEee
Confidence             11123456789999999999999999999876553

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=91.16  E-value=1.1  Score=36.23  Aligned_cols=65  Identities=11%  Similarity=0.158  Sum_probs=38.6

Q ss_pred             CCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC
Q 036510           23 GKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS   89 (288)
Q Consensus        23 g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~   89 (288)
                      ++.++.|..++.|.+|.+... +........-...| .+.+..-.++.+..+++.|+.|+.|+....
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~-g~~~d~~~s~~e~i-~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~  134 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLE-GAHSDRVCSGEESI-DLGIPNGRDSSLGCVGAQDGRIRACNIKPN  134 (238)
T ss_pred             CceEEeecccceEEEecCCcc-chHHHhhhcccccc-eeccccccccceeEEeccCCceeeeccccC
Confidence            567888999999999987521 11111111111122 223322224567888999999999987643

>PRK02888 nitrous-oxide reductase; Validated

Probab=91.05  E-value=9.5  Score=35.97  Aligned_cols=97  Identities=14%  Similarity=0.110  Sum_probs=60.6

Q ss_pred             CCcEEEEEEeC----CceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcc------cceE
Q 036510          184 DNTVKVWKLYN----GIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQW------EGKV  253 (288)
Q Consensus       184 d~~i~iwd~~~----~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~------~~~~  253 (288)
                      ++.|.+.|.++    +.   +....+.. ......|.++||++   ..++++..+.++.|.|+++.+...      +..+
T Consensus       295 gn~V~VID~~t~~~~~~---~v~~yIPV-GKsPHGV~vSPDGk---ylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~v  367 (635)
T PRK02888        295 GSKVPVVDGRKAANAGS---ALTRYVPV-PKNPHGVNTSPDGK---YFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAV  367 (635)
T ss_pred             CCEEEEEECCccccCCc---ceEEEEEC-CCCccceEECCCCC---EEEEeCCCCCcEEEEEChhhhhhhhccCCccceE
Confidence            56788888776    21   12222221 12246789999962   345555569999999998643211      1111


Q ss_pred             eecc--ccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          254 LHDF--KTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       254 ~~~~--~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ..+.  +....-.+|.++|+...+--.|..|-.|++
T Consensus       368 vaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~  403 (635)
T PRK02888        368 VAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNI  403 (635)
T ss_pred             EEeeccCCCcceEEECCCCCEEEeEeecceeEEEeh
Confidence            2211  223346799999998888888999999985

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=90.95  E-value=7.6  Score=33.41  Aligned_cols=95  Identities=13%  Similarity=0.110  Sum_probs=53.5

Q ss_pred             cceEEEEEcCCCCEEEEeeCC-CcEEEEEeCCCCc-----eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCC-cEEEe
Q 036510           12 DTVHDVAMDYYGKRLATASSD-YSIKIIGVGNNTS-----QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDG-TVIIW   84 (288)
Q Consensus        12 ~~v~~~~~s~~g~~l~s~~~d-~~i~lwd~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~-~v~iw   84 (288)
                      ..-++|+|||||+.|..+... +.|.-++++...+     ........+.+..-.++..  .+|.+.+++-.+| .|.+|
T Consensus       163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD--adG~lw~~a~~~g~~v~~~  240 (307)
T COG3386         163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVD--ADGNLWVAAVWGGGRVVRF  240 (307)
T ss_pred             EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEe--CCCCEEEecccCCceEEEE
Confidence            344678999999777666554 6666666642111     1122222233444455543  3477775444443 88898


Q ss_pred             ecCCCCceEEeEEeecCCCceeEEEecc
Q 036510           85 KEGNSNEWIKDHVFEDHKSSVNSIDWAP  112 (288)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p  112 (288)
                      +.. +.   +...+..+...+++++|--
T Consensus       241 ~pd-G~---l~~~i~lP~~~~t~~~FgG  264 (307)
T COG3386         241 NPD-GK---LLGEIKLPVKRPTNPAFGG  264 (307)
T ss_pred             CCC-Cc---EEEEEECCCCCCccceEeC
Confidence            875 44   3344444545677777743

>PHA02790 Kelch-like protein; Provisional

Probab=90.38  E-value=12  Score=34.36  Aligned_cols=106  Identities=9%  Similarity=0.047  Sum_probs=50.5

Q ss_pred             CCCEEEEeeCC--CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCC---cEEEeecCCCCceEEeE
Q 036510           22 YGKRLATASSD--YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDG---TVIIWKEGNSNEWIKDH   96 (288)
Q Consensus        22 ~g~~l~s~~~d--~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~---~v~iwd~~~~~~~~~~~   96 (288)
                      +|+..+.||.+  .++..||........+..+.........+..    ++.+.+.|+.++   ++..||..+ +.|....
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~----~g~IYviGG~~~~~~~ve~ydp~~-~~W~~~~  392 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI----NNVIYVIGGHSETDTTTEYLLPNH-DQWQFGP  392 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE----CCEEEEecCcCCCCccEEEEeCCC-CEEEeCC
Confidence            56667777754  3466676533323222222211111112222    267778887653   466788764 4454322


Q ss_pred             EeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCee
Q 036510           97 VFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWD  140 (288)
Q Consensus        97 ~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~  140 (288)
                      .+.........+.+  +  +.+.+.|+   ....||.+++ .|.
T Consensus       393 ~m~~~r~~~~~~~~--~--~~IYv~GG---~~e~ydp~~~-~W~  428 (480)
T PHA02790        393 STYYPHYKSCALVF--G--RRLFLVGR---NAEFYCESSN-TWT  428 (480)
T ss_pred             CCCCccccceEEEE--C--CEEEEECC---ceEEecCCCC-cEe
Confidence            22211111112222  2  45566663   4678887643 454

>PHA03098 kelch-like protein; Provisional

Probab=89.98  E-value=16  Score=33.93  Aligned_cols=106  Identities=10%  Similarity=0.030  Sum_probs=48.4

Q ss_pred             CCCEEEEeeCC-----CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC------CcEEEeecCCCC
Q 036510           22 YGKRLATASSD-----YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD------GTVIIWKEGNSN   90 (288)
Q Consensus        22 ~g~~l~s~~~d-----~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------~~v~iwd~~~~~   90 (288)
                      +++.++.||.+     .++..||...........+.........+..    ++.+++.|+.+      ..+..||+.+ +
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~----~~~iYv~GG~~~~~~~~~~v~~yd~~t-~  416 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV----NNLIYVIGGISKNDELLKTVECFSLNT-N  416 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE----CCEEEEECCcCCCCcccceEEEEeCCC-C
Confidence            46677777765     3355666543333222222111111111221    25677777732      4577888765 3


Q ss_pred             ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCC--------cEEEEeecCC
Q 036510           91 EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDG--------NISVFTARAD  136 (288)
Q Consensus        91 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~--------~i~i~d~~~~  136 (288)
                      .|.....++...... ++... +  +.+++.||..+        .+..||..++
T Consensus       417 ~W~~~~~~p~~r~~~-~~~~~-~--~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  466 (534)
T PHA03098        417 KWSKGSPLPISHYGG-CAIYH-D--GKIYVIGGISYIDNIKVYNIVESYNPVTN  466 (534)
T ss_pred             eeeecCCCCccccCc-eEEEE-C--CEEEEECCccCCCCCcccceEEEecCCCC
Confidence            454332222111111 22222 2  45556665432        3777877653

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=89.94  E-value=9.7  Score=31.24  Aligned_cols=101  Identities=13%  Similarity=0.054  Sum_probs=60.6

Q ss_pred             EEEEcCCCCE-EEEeeCCCcEEEEEeCCCCc-----eeeEEEec-----cccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510           16 DVAMDYYGKR-LATASSDYSIKIIGVGNNTS-----QHLAKLSG-----HKGAVWEVAWAHPKFGSILASCSFDGTVIIW   84 (288)
Q Consensus        16 ~~~~s~~g~~-l~s~~~d~~i~lwd~~~~~~-----~~~~~~~~-----h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw   84 (288)
                      ++.|+.+.+. .+.-+.+-+|.-||.+-+++     +.+..+..     |.. -..++.  +.+|.+++++-..++|...
T Consensus       162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~-PDGm~I--D~eG~L~Va~~ng~~V~~~  238 (310)
T KOG4499|consen  162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLE-PDGMTI--DTEGNLYVATFNGGTVQKV  238 (310)
T ss_pred             cccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCC-CCcceE--ccCCcEEEEEecCcEEEEE
Confidence            4567766544 45566777887788543322     22333321     111 112232  2358899999999999999


Q ss_pred             ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEE
Q 036510           85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACG  122 (288)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg  122 (288)
                      |+.+++   ....++.....|+|++|-..+...+.+++
T Consensus       239 dp~tGK---~L~eiklPt~qitsccFgGkn~d~~yvT~  273 (310)
T KOG4499|consen  239 DPTTGK---ILLEIKLPTPQITSCCFGGKNLDILYVTT  273 (310)
T ss_pred             CCCCCc---EEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence            998776   44556667889999999654323333333

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=89.82  E-value=12  Score=32.02  Aligned_cols=242  Identities=13%  Similarity=0.125  Sum_probs=116.0

Q ss_pred             EEEEEcCCCCEEEEeeCCCcEEEEEeC-----CCCceeeEEEec-----cccCeEEEEecCCC----------CCCEEEE
Q 036510           15 HDVAMDYYGKRLATASSDYSIKIIGVG-----NNTSQHLAKLSG-----HKGAVWEVAWAHPK----------FGSILAS   74 (288)
Q Consensus        15 ~~~~~s~~g~~l~s~~~d~~i~lwd~~-----~~~~~~~~~~~~-----h~~~v~~~~~~~~~----------~~~~l~s   74 (288)
                      ..|+++|.+...++...-+...+||.+     .-..+.+.++.+     -....+.+.|+...          ....|+.
T Consensus        26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif  105 (336)
T TIGR03118        26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLF  105 (336)
T ss_pred             ceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEE
Confidence            578999999999998888999999985     212233444442     12345667765321          1234788


Q ss_pred             eeCCCcEEEeecCCCCce--EEeEEeec-CCC-ceeEEEeccCCC-CeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCC
Q 036510           75 CSFDGTVIIWKEGNSNEW--IKDHVFED-HKS-SVNSIDWAPHEL-GLCLACGSSDGNISVFTARADGGWDTSRIDQAHP  149 (288)
Q Consensus        75 ~s~d~~v~iwd~~~~~~~--~~~~~~~~-h~~-~v~~l~~~p~~~-~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~  149 (288)
                      +++||+|.-|...-..+-  .....+.. -.. ....+++.+.+. ..+.++-=..++|.+||-.    +.+........
T Consensus       106 ~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~----f~~~~~~g~F~  181 (336)
T TIGR03118       106 VTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS----FRPPPLPGSFI  181 (336)
T ss_pred             EeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc----cccccCCCCcc
Confidence            999999999985432210  01111211 112 233455543322 2333333445677777643    11111111111


Q ss_pred             CCeeEEEeCCCCC---CCce-eccccc-CCCceeEEeecCCcEEEEEEeCCceeeeeeecc--ccCCcceEEEEecCCC-
Q 036510          150 VGVTSVSWAPSTA---PGAL-VGSGFL-DPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPAL--QMHTDWVRDVAWAPNL-  221 (288)
Q Consensus       150 ~~v~~i~~~p~~~---~~~~-~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~h~~~V~~v~~sp~~-  221 (288)
                      ++-.-..|.|..-   .+.+ +....- .+.+.=+.|-.-+.|-++|....     +++.+  .+.-+.=+.+...|.. 
T Consensus       182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~-----l~~r~as~g~LNaPWG~a~APa~F  256 (336)
T TIGR03118       182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ-----LLRRVASSGRLNAPWGLAIAPESF  256 (336)
T ss_pred             CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc-----EEEEeccCCcccCCceeeeChhhh
Confidence            1111111222210   0000 000000 11122334455667888887543     22222  2333333556666632 


Q ss_pred             -CCCCcEEEEEe-CCCcEEEEEeecCCCcccceEeecccc-----CeEEEEeec
Q 036510          222 -GLPKSTIASAS-EDGKVIIWTVAREGDQWEGKVLHDFKT-----PVYRVSWSL  268 (288)
Q Consensus       222 -~~~~~~l~s~s-~D~~i~iw~~~~~~~~~~~~~~~~~~~-----~i~~~~~sp  268 (288)
                       ...+. |+.|. .||+|..+|..+..  ....+......     -++.++|..
T Consensus       257 G~~sg~-lLVGNFGDG~InaFD~~sG~--~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       257 GSLSGA-LLVGNFGDGTINAYDPQSGA--QLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             CCCCCC-eEEeecCCceeEEecCCCCc--eeeeecCCCCCeEEecCeEEeeeCC
Confidence             12344 55565 59999999987532  11222222222     357888875

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=89.66  E-value=11  Score=31.37  Aligned_cols=165  Identities=11%  Similarity=0.108  Sum_probs=84.1

Q ss_pred             ccccccceEEEEEcCCCC-EEEEeeCCCcEEEEEeCCCCceeeEEE--eccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510            7 ETGHEDTVHDVAMDYYGK-RLATASSDYSIKIIGVGNNTSQHLAKL--SGHKGAVWEVAWAHPKFGSILASCSFDGTVII   83 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~-~l~s~~~d~~i~lwd~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i   83 (288)
                      +.+-.+.+.+++++|+.+ +++.....+.|.-.+.+   ++.+..+  .+ .+..=+|++..+  +.++++--.++.+.+
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~---G~vlr~i~l~g-~~D~EgI~y~g~--~~~vl~~Er~~~L~~   90 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD---GKVLRRIPLDG-FGDYEGITYLGN--GRYVLSEERDQRLYI   90 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----EEEEEE-SS--SSEEEEEE-ST--TEEEEEETTTTEEEE
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC---CCEEEEEeCCC-CCCceeEEEECC--CEEEEEEcCCCcEEE
Confidence            345566799999999765 45555566666555543   3444444  34 345678888642  555554445899999


Q ss_pred             eecCCCCceE---EeEEee-----cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecC---CCCeeeEEe-----ecc
Q 036510           84 WKEGNSNEWI---KDHVFE-----DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA---DGGWDTSRI-----DQA  147 (288)
Q Consensus        84 wd~~~~~~~~---~~~~~~-----~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~---~~~~~~~~~-----~~~  147 (288)
                      .++...+...   ....+.     .+...+-.++|.|.. +.+++ +-......+|.++.   .........     ...
T Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~-~~L~v-~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~  168 (248)
T PF06977_consen   91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT-NRLFV-AKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL  168 (248)
T ss_dssp             EEE----TT--EEEEEEEE---S---SS--EEEEEETTT-TEEEE-EEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred             EEEeccccccchhhceEEecccccCCCcceEEEEEcCCC-CEEEE-EeCCCChhhEEEccccCccceeeccccccccccc
Confidence            8874322111   111111     244568899999974 44443 44556677777754   111111110     011


Q ss_pred             CCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEE
Q 036510          148 HPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKL  192 (288)
Q Consensus       148 ~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  192 (288)
                      ....+..+.+.|..             +++++-+...+.|-.+|.
T Consensus       169 ~~~d~S~l~~~p~t-------------~~lliLS~es~~l~~~d~  200 (248)
T PF06977_consen  169 FVRDLSGLSYDPRT-------------GHLLILSDESRLLLELDR  200 (248)
T ss_dssp             -SS---EEEEETTT-------------TEEEEEETTTTEEEEE-T
T ss_pred             eeccccceEEcCCC-------------CeEEEEECCCCeEEEECC
Confidence            22346677777775             267777788888888883

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=88.10  E-value=15  Score=32.88  Aligned_cols=82  Identities=21%  Similarity=0.290  Sum_probs=43.1

Q ss_pred             cEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCC---------c--EEEEEeecCCCcccceEe
Q 036510          186 TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG---------K--VIIWTVAREGDQWEGKVL  254 (288)
Q Consensus       186 ~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~---------~--i~iw~~~~~~~~~~~~~~  254 (288)
                      .+++.|+.++.....   .+..-.  -..+.|.+++    +.|.-...|.         .  |+.|++-..  ..+..++
T Consensus       151 ~l~v~Dl~tg~~l~d---~i~~~~--~~~~~W~~d~----~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~--~~~d~lv  219 (414)
T PF02897_consen  151 TLRVFDLETGKFLPD---GIENPK--FSSVSWSDDG----KGFFYTRFDEDQRTSDSGYPRQVYRHKLGTP--QSEDELV  219 (414)
T ss_dssp             EEEEEETTTTEEEEE---EEEEEE--SEEEEECTTS----SEEEEEECSTTTSS-CCGCCEEEEEEETTS---GGG-EEE
T ss_pred             EEEEEECCCCcCcCC---cccccc--cceEEEeCCC----CEEEEEEeCcccccccCCCCcEEEEEECCCC--hHhCeeE
Confidence            499999988742211   111111  1238999984    3454444333         2  555554332  2232344


Q ss_pred             ecc-ccC--eEEEEeecCCCEEEEEeC
Q 036510          255 HDF-KTP--VYRVSWSLTGNILAVADG  278 (288)
Q Consensus       255 ~~~-~~~--i~~~~~spdg~~l~s~~~  278 (288)
                      .+. ...  ...+..++||++|...+.
T Consensus       220 fe~~~~~~~~~~~~~s~d~~~l~i~~~  246 (414)
T PF02897_consen  220 FEEPDEPFWFVSVSRSKDGRYLFISSS  246 (414)
T ss_dssp             EC-TTCTTSEEEEEE-TTSSEEEEEEE
T ss_pred             EeecCCCcEEEEEEecCcccEEEEEEE
Confidence            433 222  578999999999776543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=88.07  E-value=2.4  Score=23.59  Aligned_cols=27  Identities=15%  Similarity=0.316  Sum_probs=19.3

Q ss_pred             cCeEEEEeecCCCEEEEEeC-C--CcEEEe
Q 036510          259 TPVYRVSWSLTGNILAVADG-N--NNVTLW  285 (288)
Q Consensus       259 ~~i~~~~~spdg~~l~s~~~-d--~~v~~w  285 (288)
                      .......|||||++|+-++. +  |.-.||
T Consensus         9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            45678999999998877764 4  666666

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=87.25  E-value=29  Score=33.71  Aligned_cols=41  Identities=12%  Similarity=0.263  Sum_probs=32.0

Q ss_pred             cCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCc
Q 036510          207 MHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ  248 (288)
Q Consensus       207 ~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~  248 (288)
                      .+...|..+.|+|.+ ..+..|+.-..|+++|+||+.....+
T Consensus       144 ~~~~~i~qv~WhP~s-~~~~~l~vLtsdn~lR~y~~~~~~~p  184 (717)
T PF10168_consen  144 NSSLEIKQVRWHPWS-ESDSHLVVLTSDNTLRLYDISDPQHP  184 (717)
T ss_pred             CCCceEEEEEEcCCC-CCCCeEEEEecCCEEEEEecCCCCCC
Confidence            345579999999974 23578999999999999999865433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=86.94  E-value=17  Score=30.34  Aligned_cols=139  Identities=20%  Similarity=0.212  Sum_probs=70.9

Q ss_pred             CeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCC
Q 036510          116 GLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNG  195 (288)
Q Consensus       116 ~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  195 (288)
                      +..++.|+.+| |.+|+.......  .+..  +...|..+...|+-              +.|+.= .|+.+.++++..-
T Consensus         7 ~~~L~vGt~~G-l~~~~~~~~~~~--~~i~--~~~~I~ql~vl~~~--------------~~llvL-sd~~l~~~~L~~l   66 (275)
T PF00780_consen    7 GDRLLVGTEDG-LYVYDLSDPSKP--TRIL--KLSSITQLSVLPEL--------------NLLLVL-SDGQLYVYDLDSL   66 (275)
T ss_pred             CCEEEEEECCC-EEEEEecCCccc--eeEe--ecceEEEEEEeccc--------------CEEEEE-cCCccEEEEchhh
Confidence            55678888888 888888332221  1111  22338888777654              333332 3599999998542


Q ss_pred             ceeeee---e-------eccccCCcceEEEE-ecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeec--cccCeE
Q 036510          196 IWKMDC---F-------PALQMHTDWVRDVA-WAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHD--FKTPVY  262 (288)
Q Consensus       196 ~~~~~~---~-------~~~~~h~~~V~~v~-~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~--~~~~i~  262 (288)
                      ......   .       .........|..++ -...   .+...+.....++|.+|......... ....++  ....+.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~---~~~~~L~va~kk~i~i~~~~~~~~~f-~~~~ke~~lp~~~~  142 (275)
T PF00780_consen   67 EPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGH---EGSRRLCVAVKKKILIYEWNDPRNSF-SKLLKEISLPDPPS  142 (275)
T ss_pred             ccccccccccccccccccccccccCCeeEEeecccc---ccceEEEEEECCEEEEEEEECCcccc-cceeEEEEcCCCcE
Confidence            110000   0       00001111233333 1111   12334445555599999887632111 012222  246788


Q ss_pred             EEEeecCCCEEEEEeCCC
Q 036510          263 RVSWSLTGNILAVADGNN  280 (288)
Q Consensus       263 ~~~~spdg~~l~s~~~d~  280 (288)
                      .++|.  ++.|+.|..++
T Consensus       143 ~i~~~--~~~i~v~~~~~  158 (275)
T PF00780_consen  143 SIAFL--GNKICVGTSKG  158 (275)
T ss_pred             EEEEe--CCEEEEEeCCc
Confidence            89998  77777776543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.39  E-value=6.3  Score=39.40  Aligned_cols=129  Identities=16%  Similarity=0.193  Sum_probs=74.9

Q ss_pred             eCCCcEEEEeecCCCC--eeeEEeec------cCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeC
Q 036510          123 SSDGNISVFTARADGG--WDTSRIDQ------AHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYN  194 (288)
Q Consensus       123 ~~d~~i~i~d~~~~~~--~~~~~~~~------~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  194 (288)
                      +++-.|..||+++-..  ......+.      .-.....++.|+|.-+             ...+....|..|++.-+..
T Consensus       121 sng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-------------~n~av~l~dlsl~V~~~~~  187 (1405)
T KOG3630|consen  121 SNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-------------LNSAVDLSDLSLRVKSTKQ  187 (1405)
T ss_pred             cCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-------------chhhhhccccchhhhhhhh
Confidence            4444788899875211  11111111      2234566788988753             2345556688887765533


Q ss_pred             CceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeecc----ccCeEEEEeecCC
Q 036510          195 GIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDF----KTPVYRVSWSLTG  270 (288)
Q Consensus       195 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~----~~~i~~~~~spdg  270 (288)
                      ..   .....+ .....+.+|+|+|-    +.+++.|-..|++..|.....    .+..+.+.    .-.|.+|+|-...
T Consensus       188 ~~---~~v~s~-p~t~~~Tav~WSpr----GKQl~iG~nnGt~vQy~P~le----ik~~ip~Pp~~e~yrvl~v~Wl~t~  255 (1405)
T KOG3630|consen  188 LA---QNVTSF-PVTNSQTAVLWSPR----GKQLFIGRNNGTEVQYEPSLE----IKSEIPEPPVEENYRVLSVTWLSTQ  255 (1405)
T ss_pred             hh---hhhccc-CcccceeeEEeccc----cceeeEecCCCeEEEeecccc----eeecccCCCcCCCcceeEEEEecce
Confidence            11   011111 12345799999996    478999999999999987632    11222221    2358889997777


Q ss_pred             CEEEEE
Q 036510          271 NILAVA  276 (288)
Q Consensus       271 ~~l~s~  276 (288)
                      .++++=
T Consensus       256 eflvvy  261 (1405)
T KOG3630|consen  256 EFLVVY  261 (1405)
T ss_pred             eEEEEe
Confidence            666543

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=84.86  E-value=14  Score=33.21  Aligned_cols=48  Identities=13%  Similarity=0.113  Sum_probs=33.6

Q ss_pred             ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEecccc
Q 036510            7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKG   56 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~   56 (288)
                      +......+.+++.+|++++.|....=|.|.|+|+...  ..++-.+|..+
T Consensus       303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~--~vvrmWKGYRd  350 (415)
T PF14655_consen  303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARG--IVVRMWKGYRD  350 (415)
T ss_pred             eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCC--hhhhhhccCcc
Confidence            3345567888999999998888777788999998543  33444444443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=84.64  E-value=25  Score=30.21  Aligned_cols=234  Identities=11%  Similarity=0.206  Sum_probs=99.0

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCC-C-CceeeE-EEecc-ccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510            9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGN-N-TSQHLA-KLSGH-KGAVWEVAWAHPKFGSILASCSFDGTVIIW   84 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~-~-~~~~~~-~~~~h-~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw   84 (288)
                      +-+..+..|.|....+-++.|. .++  |+.... + +.+... ....- .-..+.+.|..   .+.++. +..+.+ +.
T Consensus        14 ~t~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~---~~g~iv-G~~g~l-l~   85 (302)
T PF14870_consen   14 PTDKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG---NEGWIV-GEPGLL-LH   85 (302)
T ss_dssp             S-SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEET---TEEEEE-EETTEE-EE
T ss_pred             CCCCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEecC---CceEEE-cCCceE-EE
Confidence            4566888999985555566554 454  344322 1 222211 11110 12356777752   344444 444543 33


Q ss_pred             ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecC-CCCeeeEEeeccCCCCeeEEEeCCCCCC
Q 036510           85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA-DGGWDTSRIDQAHPVGVTSVSWAPSTAP  163 (288)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~v~~i~~~p~~~~  163 (288)
                      ....+..|..+..-..-......+....+  ...++.+ ..|.  ||-... +..|....  ..-...+..+..++++  
T Consensus        86 T~DgG~tW~~v~l~~~lpgs~~~i~~l~~--~~~~l~~-~~G~--iy~T~DgG~tW~~~~--~~~~gs~~~~~r~~dG--  156 (302)
T PF14870_consen   86 TTDGGKTWERVPLSSKLPGSPFGITALGD--GSAELAG-DRGA--IYRTTDGGKTWQAVV--SETSGSINDITRSSDG--  156 (302)
T ss_dssp             ESSTTSS-EE----TT-SS-EEEEEEEET--TEEEEEE-TT----EEEESSTTSSEEEEE---S----EEEEEE-TTS--
T ss_pred             ecCCCCCcEEeecCCCCCCCeeEEEEcCC--CcEEEEc-CCCc--EEEeCCCCCCeeEcc--cCCcceeEeEEECCCC--
Confidence            33345566543211111122233332222  3333333 3444  454544 34565432  2333557777777765  


Q ss_pred             CceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEee
Q 036510          164 GALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA  243 (288)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~  243 (288)
                                  ++++.++.-+.+.-||--...+...   . +.-..+|.++.|.|+.     .|-.....+.|+.=+..
T Consensus       157 ------------~~vavs~~G~~~~s~~~G~~~w~~~---~-r~~~~riq~~gf~~~~-----~lw~~~~Gg~~~~s~~~  215 (302)
T PF14870_consen  157 ------------RYVAVSSRGNFYSSWDPGQTTWQPH---N-RNSSRRIQSMGFSPDG-----NLWMLARGGQIQFSDDP  215 (302)
T ss_dssp             -------------EEEEETTSSEEEEE-TT-SS-EEE---E---SSS-EEEEEE-TTS------EEEEETTTEEEEEE-T
T ss_pred             ------------cEEEEECcccEEEEecCCCccceEE---c-cCccceehhceecCCC-----CEEEEeCCcEEEEccCC
Confidence                        6666665555555676322222211   1 2234579999999983     34445588888876511


Q ss_pred             cCCCcccceEeecc--cc-CeEEEEeecCCCEEEEEeCCCcE
Q 036510          244 REGDQWEGKVLHDF--KT-PVYRVSWSLTGNILAVADGNNNV  282 (288)
Q Consensus       244 ~~~~~~~~~~~~~~--~~-~i~~~~~spdg~~l~s~~~d~~v  282 (288)
                      .....+.. .+.+.  .. -+..++|.++++.+|+|+. |++
T Consensus       216 ~~~~~w~~-~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l  255 (302)
T PF14870_consen  216 DDGETWSE-PIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL  255 (302)
T ss_dssp             TEEEEE----B-TTSS--S-EEEEEESSSS-EEEEEST-T-E
T ss_pred             CCcccccc-ccCCcccCceeeEEEEecCCCCEEEEeCC-ccE
Confidence            11011111 11111  12 3789999999999887754 444

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=84.59  E-value=22  Score=29.60  Aligned_cols=148  Identities=14%  Similarity=0.196  Sum_probs=79.0

Q ss_pred             CCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEe-----
Q 036510           21 YYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKD-----   95 (288)
Q Consensus        21 ~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~-----   95 (288)
                      ..++.|+.|..+| +.+++..... ......  +...|..+...+.  -+.|+.-+ |+.+.++++..-......     
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~-~~~~i~--~~~~I~ql~vl~~--~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~   77 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPS-KPTRIL--KLSSITQLSVLPE--LNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF   77 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCc-cceeEe--ecceEEEEEEecc--cCEEEEEc-CCccEEEEchhhccccccccccc
Confidence            3578888898887 8888883221 222222  2334888888754  34444443 499999997543211100     


Q ss_pred             -------EEeecCCCceeEEE-eccCCCCeEEEEEeCCCcEEEEeecCCC-Ce-eeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           96 -------HVFEDHKSSVNSID-WAPHELGLCLACGSSDGNISVFTARADG-GW-DTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        96 -------~~~~~h~~~v~~l~-~~p~~~~~~l~sg~~d~~i~i~d~~~~~-~~-~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                             ..+ .....+...+ -.+......++ ....++|.+|...... .. ... ..-..+..+.++.|.+      
T Consensus        78 ~~~~~~~~~~-~~~~~v~~f~~~~~~~~~~~L~-va~kk~i~i~~~~~~~~~f~~~~-ke~~lp~~~~~i~~~~------  148 (275)
T PF00780_consen   78 PKSRSLPTKL-PETKGVSFFAVNGGHEGSRRLC-VAVKKKILIYEWNDPRNSFSKLL-KEISLPDPPSSIAFLG------  148 (275)
T ss_pred             cccccccccc-cccCCeeEEeeccccccceEEE-EEECCEEEEEEEECCccccccee-EEEEcCCCcEEEEEeC------
Confidence                   011 1122333333 11222233344 3445689998886532 22 111 1123456688888874      


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCC
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNG  195 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  195 (288)
                                +.++.|..+ ...+.|+.++
T Consensus       149 ----------~~i~v~~~~-~f~~idl~~~  167 (275)
T PF00780_consen  149 ----------NKICVGTSK-GFYLIDLNTG  167 (275)
T ss_pred             ----------CEEEEEeCC-ceEEEecCCC
Confidence                      346666544 4777888754

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.52  E-value=31  Score=31.27  Aligned_cols=109  Identities=10%  Similarity=0.149  Sum_probs=68.1

Q ss_pred             CCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcE
Q 036510          148 HPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKST  227 (288)
Q Consensus       148 ~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~  227 (288)
                      ..+.|.+|.|+|+.              +.++.--.|++|-+.+....+..+...+..+.....|..+.|+.+.     -
T Consensus        65 d~G~I~SIkFSlDn--------------kilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~-----e  125 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDN--------------KILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST-----E  125 (657)
T ss_pred             CCCceeEEEeccCc--------------ceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe-----e
Confidence            34579999999997              6688777888898887643321112222223344458888898752     2


Q ss_pred             EEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeC
Q 036510          228 IASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADG  278 (288)
Q Consensus       228 l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~  278 (288)
                      +|--+ |.-+-+|.+....  ...+.++.++..|....|.|+.+.++-++.
T Consensus       126 ~A~i~-~~G~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  126 IAFIT-DQGIEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             EEEEe-cCCeEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeecc
Confidence            43333 3346677664332  123455666778999999999887655543

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=83.64  E-value=33  Score=30.87  Aligned_cols=29  Identities=17%  Similarity=0.347  Sum_probs=25.3

Q ss_pred             ccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          258 KTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       258 ~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      .+++..++.||+|+++|.-..+|++.+..
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~l~v~s  244 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGNLWVVS  244 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCCEEEEE
Confidence            35899999999999999999999988765

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=83.14  E-value=38  Score=31.21  Aligned_cols=144  Identities=13%  Similarity=0.098  Sum_probs=78.9

Q ss_pred             CeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCC
Q 036510          116 GLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNG  195 (288)
Q Consensus       116 ~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  195 (288)
                      ..++..|+.-..++-.|+..+.....+..   |.. + -+.|.|...      ...+.+.+.|+-- .+..|.-.|.+-.
T Consensus       480 sli~~dg~~~~kLykmDIErGkvveeW~~---~dd-v-vVqy~p~~k------f~qmt~eqtlvGl-S~~svFrIDPR~~  547 (776)
T COG5167         480 SLIYLDGGERDKLYKMDIERGKVVEEWDL---KDD-V-VVQYNPYFK------FQQMTDEQTLVGL-SDYSVFRIDPRAR  547 (776)
T ss_pred             ceEEecCCCcccceeeecccceeeeEeec---CCc-c-eeecCCchh------HHhcCccceEEee-cccceEEeccccc
Confidence            44566666666777777766543222221   221 2 345555431      1223334455533 3555544555432


Q ss_pred             ceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEE
Q 036510          196 IWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAV  275 (288)
Q Consensus       196 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s  275 (288)
                      ..++..    ...++++..-.||.-.-....+||.||.-|-||+||--.   ...++.+-.++..|.-+.-+.+|+.+++
T Consensus       548 gNKi~v----~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig---~rAKtalP~lG~aIk~idvta~Gk~ila  620 (776)
T COG5167         548 GNKIKV----VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIG---KRAKTALPGLGDAIKHIDVTANGKHILA  620 (776)
T ss_pred             CCceee----eeehhccccccccccccccCceEEEecCCCceeeehhhc---chhhhcCcccccceeeeEeecCCcEEEE
Confidence            222221    223444555566653222246899999999999998432   1122334456677888999999999877


Q ss_pred             EeC
Q 036510          276 ADG  278 (288)
Q Consensus       276 ~~~  278 (288)
                      .+.
T Consensus       621 TCk  623 (776)
T COG5167         621 TCK  623 (776)
T ss_pred             eec
Confidence            664

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=82.94  E-value=42  Score=31.50  Aligned_cols=178  Identities=13%  Similarity=0.185  Sum_probs=89.0

Q ss_pred             cCeEEEEecCCCCCCEEE-Eee--CCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCe--EEEEEeCCCcEEE
Q 036510           56 GAVWEVAWAHPKFGSILA-SCS--FDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGL--CLACGSSDGNISV  130 (288)
Q Consensus        56 ~~v~~~~~~~~~~~~~l~-s~s--~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~--~l~sg~~d~~i~i  130 (288)
                      .++.+++|.   ||+.++ +.=  .+|.++.=|.   .   ....|    ..|..+.|.|-....  .+++.-..+.|.+
T Consensus        20 HPvhGlaWT---DGkqVvLT~L~l~~gE~kfGds---~---viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtV   86 (671)
T PF15390_consen   20 HPVHGLAWT---DGKQVVLTDLQLHNGEPKFGDS---K---VIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTV   86 (671)
T ss_pred             ccccceEec---CCCEEEEEeeeeeCCccccCCc---c---Eeecc----ceeeeeeecCcccCCCCceEEEeccceEEE
Confidence            478899995   355444 321  2344333211   1   11122    358999999863211  2444556789999


Q ss_pred             EeecCC----CCee-eEE--eeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeee
Q 036510          131 FTARAD----GGWD-TSR--IDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFP  203 (288)
Q Consensus       131 ~d~~~~----~~~~-~~~--~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  203 (288)
                      |.+...    +.+. ...  +.+..+.----+.|.|...              .|+.=.....-.+.++.....  ....
T Consensus        87 WqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~--------------iL~VLT~~dvSV~~sV~~d~s--rVka  150 (671)
T PF15390_consen   87 WQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA--------------ILTVLTARDVSVLPSVHCDSS--RVKA  150 (671)
T ss_pred             EEeccCccccccceeeeeeeccCCcccCCCcccccCCCc--------------eEEEEecCceeEeeeeeeCCc--eEEE
Confidence            998632    1111 111  1112222223467888753              122111122222344432211  1111


Q ss_pred             ccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCC-CcccceEeeccccCeEEEEe
Q 036510          204 ALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG-DQWEGKVLHDFKTPVYRVSW  266 (288)
Q Consensus       204 ~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~-~~~~~~~~~~~~~~i~~~~~  266 (288)
                      .++ ..+.|.|.+|-+|+   .+++|+.+.--.-.|||-..+. ..+...++++.++.|.++.-
T Consensus       151 Di~-~~G~IhCACWT~DG---~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~A  210 (671)
T PF15390_consen  151 DIK-TSGLIHCACWTKDG---QRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEA  210 (671)
T ss_pred             ecc-CCceEEEEEecCcC---CEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEE
Confidence            222 34458999999985   4566666776678899865431 12333455666666655543

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=82.14  E-value=39  Score=31.64  Aligned_cols=121  Identities=11%  Similarity=0.131  Sum_probs=66.8

Q ss_pred             ccccceEEEEEcCC----CCEEEEeeCCCcEEEEEeCC---CCceeeEEEeccccC-----eEEEEecCCCCCCEEEEee
Q 036510            9 GHEDTVHDVAMDYY----GKRLATASSDYSIKIIGVGN---NTSQHLAKLSGHKGA-----VWEVAWAHPKFGSILASCS   76 (288)
Q Consensus         9 ~h~~~v~~~~~s~~----g~~l~s~~~d~~i~lwd~~~---~~~~~~~~~~~h~~~-----v~~~~~~~~~~~~~l~s~s   76 (288)
                      |+-..|.+++|.|-    -..|++...-+.|.+|-+-.   +..+.+.+...+-..     -.++.|. |. ..+|+.-.
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWH-Pk-~~iL~VLT  131 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWH-PK-KAILTVLT  131 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCccccc-CC-CceEEEEe
Confidence            44567899999884    34678888899999998741   222333332222111     1346674 42 34554333


Q ss_pred             CCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeec
Q 036510           77 FDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTAR  134 (288)
Q Consensus        77 ~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~  134 (288)
                      ....-.+++++..+.-.+ ..++ -.+.|.|.+|.+|+ .+++++-+..=+-++||-.
T Consensus       132 ~~dvSV~~sV~~d~srVk-aDi~-~~G~IhCACWT~DG-~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  132 ARDVSVLPSVHCDSSRVK-ADIK-TSGLIHCACWTKDG-QRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             cCceeEeeeeeeCCceEE-Eecc-CCceEEEEEecCcC-CEEEEEeCCeEEEEEecCc
Confidence            322223445543332111 1233 45789999999986 3444433444566788754

>PRK13684 Ycf48-like protein; Provisional

Probab=81.85  E-value=34  Score=29.77  Aligned_cols=138  Identities=11%  Similarity=0.168  Sum_probs=66.5

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEE-EEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKI-IGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS   89 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~l-wd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~   89 (288)
                      ...++.+.+.+++.+++.+ ..|.+.. ++-...+...+  ..+-...++++.+.++  +..++. +..|.+.+=....+
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~--~~~~~~~l~~i~~~~~--g~~~~v-g~~G~~~~~s~d~G  245 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPH--QRNSSRRLQSMGFQPD--GNLWML-ARGGQIRFNDPDDL  245 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEe--eCCCcccceeeeEcCC--CCEEEE-ecCCEEEEccCCCC
Confidence            4567888888888666544 4454332 12111112222  2233456788888653  555444 55677654223334


Q ss_pred             CceEEeEEee-c-CCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCC
Q 036510           90 NEWIKDHVFE-D-HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAP  159 (288)
Q Consensus        90 ~~~~~~~~~~-~-h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p  159 (288)
                      ..|.... .+ . -...+..+.+.|+  +..+++ +.+|.+. .....+..|........-+.....+.|..
T Consensus       246 ~sW~~~~-~~~~~~~~~l~~v~~~~~--~~~~~~-G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~  312 (334)
T PRK13684        246 ESWSKPI-IPEITNGYGYLDLAYRTP--GEIWAG-GGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLD  312 (334)
T ss_pred             Ccccccc-CCccccccceeeEEEcCC--CCEEEE-cCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeC
Confidence            4443211 11 0 1234677888875  444444 4566553 33333445543221112223455555543

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=81.61  E-value=26  Score=31.59  Aligned_cols=103  Identities=11%  Similarity=0.202  Sum_probs=52.5

Q ss_pred             CCCcEEEEEeCCCCceeeEEEec--cccCeEEEEecCCCCCC-EEEEeeCCCcEEEeecCCCCceEEeEEeecC------
Q 036510           31 SDYSIKIIGVGNNTSQHLAKLSG--HKGAVWEVAWAHPKFGS-ILASCSFDGTVIIWKEGNSNEWIKDHVFEDH------  101 (288)
Q Consensus        31 ~d~~i~lwd~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h------  101 (288)
                      +..++.+||+...  +.++++.-  -....-.|+|.|++... -|+.+.-..+|-.|--....+|...+.+.-.      
T Consensus       220 yG~~l~vWD~~~r--~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~  297 (461)
T PF05694_consen  220 YGHSLHVWDWSTR--KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG  297 (461)
T ss_dssp             S--EEEEEETTTT--EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred             ccCeEEEEECCCC--cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence            4578999999643  56666542  22345678998865433 4555555555555543234445333222110      


Q ss_pred             -------------CCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCC
Q 036510          102 -------------KSSVNSIDWAPHELGLCLACGSSDGNISVFTARAD  136 (288)
Q Consensus       102 -------------~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~  136 (288)
                                   ..-|+.+..+.|+ ..+.+++=..|.|+.||+...
T Consensus       298 ~~lp~ml~~~~~~P~LitDI~iSlDD-rfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  298 WILPEMLKPFGAVPPLITDILISLDD-RFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             S---GGGGGG-EE------EEE-TTS--EEEEEETTTTEEEEEE-SST
T ss_pred             ccccccccccccCCCceEeEEEccCC-CEEEEEcccCCcEEEEecCCC
Confidence                         1236778888874 456667777899999999764

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=80.89  E-value=37  Score=29.51  Aligned_cols=73  Identities=11%  Similarity=0.144  Sum_probs=43.9

Q ss_pred             ceEEEEecCCCC---CCCcEEEEEeCCCcEEEEEeecCCCcc-cceEeeccccCeEEEEeecCCCEEEEEeCCCcEE
Q 036510          211 WVRDVAWAPNLG---LPKSTIASASEDGKVIIWTVAREGDQW-EGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVT  283 (288)
Q Consensus       211 ~V~~v~~sp~~~---~~~~~l~s~s~D~~i~iw~~~~~~~~~-~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~  283 (288)
                      .+..+.|.+...   +.+.+|++.-..+.|....+....... ....+.++...+..+++.|||.+.++-+.+|.|.
T Consensus       254 ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  254 APTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             -EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             ccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            456666664321   245677766666777777765321111 1122334555799999999999999988888873

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=80.72  E-value=38  Score=29.61  Aligned_cols=224  Identities=14%  Similarity=0.089  Sum_probs=101.2

Q ss_pred             EEEEcCCCCEEEEeeCC-CcEEEEEeCCCCceeeEEEecccc---CeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCc
Q 036510           16 DVAMDYYGKRLATASSD-YSIKIIGVGNNTSQHLAKLSGHKG---AVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNE   91 (288)
Q Consensus        16 ~~~~s~~g~~l~s~~~d-~~i~lwd~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~   91 (288)
                      .+-|||||++||-.-.| ..|+.+.+.        .......   .+..+.+..+  |..-..    -.+.|+++..+..
T Consensus       105 ~~~WSpd~~~la~~~~d~~~v~~~~~~--------~~~~~~~~yp~~~~~~YPk~--G~~np~----v~l~v~~~~~~~~  170 (353)
T PF00930_consen  105 AVWWSPDSKYLAFLRFDEREVPEYPLP--------DYSPPDSQYPEVESIRYPKA--GDPNPR----VSLFVVDLASGKT  170 (353)
T ss_dssp             SEEE-TTSSEEEEEEEE-TTS-EEEEE--------EESSSTESS-EEEEEE--BT--TS---E----EEEEEEESSSTCC
T ss_pred             ceEECCCCCEEEEEEECCcCCceEEee--------ccCCccccCCcccccccCCC--CCcCCc----eEEEEEECCCCcE
Confidence            46799999998876654 223333221        1111111   3455666433  222111    1455567765542


Q ss_pred             eEEeEEe---ecCCCceeEEEeccCCCCeEEEEEeCCC---cEEEEeecCCCCeeeEEeeccCCCC---eeEEEeC-CCC
Q 036510           92 WIKDHVF---EDHKSSVNSIDWAPHELGLCLACGSSDG---NISVFTARADGGWDTSRIDQAHPVG---VTSVSWA-PST  161 (288)
Q Consensus        92 ~~~~~~~---~~h~~~v~~l~~~p~~~~~~l~sg~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~---v~~i~~~-p~~  161 (288)
                      . .+...   ..-..-+..+.|.+++...++.....++   .+.++|...+.. .... .+..+.-   -..+.|. +++
T Consensus       171 ~-~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~-~~~~-~e~~~~Wv~~~~~~~~~~~~~  247 (353)
T PF00930_consen  171 T-ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET-RVVL-EETSDGWVDVYDPPHFLGPDG  247 (353)
T ss_dssp             C-EE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC-EEEE-EEESSSSSSSSSEEEE-TTTS
T ss_pred             E-EeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce-eEEE-EecCCcceeeecccccccCCC
Confidence            1 11111   1223457789999884223344445444   233445544322 1111 1111111   1122222 332


Q ss_pred             CCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEE-EEecCCCCCCCcEEEEEeC--CCcEE
Q 036510          162 APGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRD-VAWAPNLGLPKSTIASASE--DGKVI  238 (288)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~-v~~sp~~~~~~~~l~s~s~--D~~i~  238 (288)
                                   ..++.....||.-.|+-+......   ...+....-.|.. +.|.++.   +...-++..  ...-.
T Consensus       248 -------------~~~l~~s~~~G~~hly~~~~~~~~---~~~lT~G~~~V~~i~~~d~~~---~~iyf~a~~~~p~~r~  308 (353)
T PF00930_consen  248 -------------NEFLWISERDGYRHLYLYDLDGGK---PRQLTSGDWEVTSILGWDEDN---NRIYFTANGDNPGERH  308 (353)
T ss_dssp             -------------SEEEEEEETTSSEEEEEEETTSSE---EEESS-SSS-EEEEEEEECTS---SEEEEEESSGGTTSBE
T ss_pred             -------------CEEEEEEEcCCCcEEEEEcccccc---eeccccCceeecccceEcCCC---CEEEEEecCCCCCceE
Confidence                         245555567887776666543211   2233434445655 5667763   233334544  34677


Q ss_pred             EEEeecC-CCcccceEeeccccCeEEEEeecCCCEEEEEe
Q 036510          239 IWTVARE-GDQWEGKVLHDFKTPVYRVSWSLTGNILAVAD  277 (288)
Q Consensus       239 iw~~~~~-~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~  277 (288)
                      +|.+... ..  ..+.+......-..+.|||||++++...
T Consensus       309 lY~v~~~~~~--~~~~LT~~~~~~~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  309 LYRVSLDSGG--EPKCLTCEDGDHYSASFSPDGKYYVDTY  346 (353)
T ss_dssp             EEEEETTETT--EEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred             EEEEEeCCCC--CeEeccCCCCCceEEEECCCCCEEEEEE
Confidence            7777654 21  1233333222227999999999977654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=80.53  E-value=25  Score=27.30  Aligned_cols=31  Identities=19%  Similarity=0.307  Sum_probs=25.0

Q ss_pred             CeEEEEecCCC----CCCEEEEeeCCCcEEEeecC
Q 036510           57 AVWEVAWAHPK----FGSILASCSFDGTVIIWKEG   87 (288)
Q Consensus        57 ~v~~~~~~~~~----~~~~l~s~s~d~~v~iwd~~   87 (288)
                      .+..++|||..    ...+|+....++.+.||...
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            68899999853    24588899999999999754

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	288
3bg0_A	316	Architecture Of A Coat For The Nuclear Pore Membran		6e-81
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		4e-65
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		1e-64
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		2e-64
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		3e-64
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		3e-62
3f3p_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		3e-24
3f3f_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		3e-24
3ewe_A	349	Crystal Structure Of The Nup85SEH1 COMPLEX Length =		4e-24
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-15
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		2e-13
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		4e-08
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		3e-12
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		3e-10
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		8e-11
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		8e-10
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		4e-09
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-08
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		1e-07
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		4e-07
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		5e-07
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		5e-07
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		9e-07
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-06
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-06
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		5e-06
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		1e-05
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		3e-05
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		3e-05
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		7e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-04
4g56_B	357	Crystal Structure Of Full Length Prmt5/mep50 Comple		2e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-04
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		2e-04
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		3e-04
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		3e-04
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		3e-04
3dwl_C	377	Crystal Structure Of Fission Yeast Arp2/3 Complex L		3e-04
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		8e-04
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		8e-04
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		8e-04

>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316

Iteration: 1
 Score =  297 bits (760), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 152/288 (52%), Positives = 197/288 (68%), Gaps = 8/288 (2%)
Query: 6   IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH 65
           ++T HED +HD  MDYYG RLAT SSD S+KI  V N     +A L GH+G VW+VAWAH
Sbjct: 8   VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAH 67
Query: 66  PKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125
           P +G+ILASCS+D  VIIW+E N   W K H    H SSVNS+ WAPH+ GL LACGSSD
Sbjct: 68  PMYGNILASCSYDRKVIIWREENGT-WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD 126
Query: 126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV---GSGFLDPVQKLCSGG 182
           G IS+ T   +G W+  +I+ AH +G  +VSWAP+  PG+L+        + +++  SGG
Sbjct: 127 GAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG 186
Query: 183 CDNTVKVWK-LYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT 241
           CDN +K+WK   +G WK +    L+ H+DWVRDVAWAP++GLP STIAS S+DG+V IWT
Sbjct: 187 CDNLIKLWKEEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244
Query: 242 V-AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA 288
                 + W  K+LH F   V+ VSWS+T NILAV+ G+N VTLW+E+
Sbjct: 245 CDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score =  244 bits (623), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 134/284 (47%), Positives = 177/284 (62%), Gaps = 6/284 (2%)
Query: 6   IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH 65
           I   H + +HD  +DYYGKRLAT SSD +IKI  V   T + +  L+GH+G VW V WAH
Sbjct: 4   IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 66  PKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125
           PKFG+ILASCS+DG V+IWKE N   W +  V   H +SVNS+ WAPHE G  L   SSD
Sbjct: 64  PKFGTILASCSYDGKVLIWKEENGR-WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122
Query: 126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDN 185
           G +SV   + +G      ID AH +GV S SWAP+T       +G  +  +K  +GG DN
Sbjct: 123 GKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADN 180
Query: 186 TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE 245
            VK+WK  +          L+ H+DWVRDVAW+P + L +S +AS S+D   IIWT   E
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV-LLRSYLASVSQDRTCIIWTQDNE 239
Query: 246 GDQWEGKVLHDFKTP--VYRVSWSLTGNILAVADGNNNVTLWEE 287
              W+  +L + K P  ++R SWSL+GN+LA++ G+N VTLW+E
Sbjct: 240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score =  242 bits (618), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 134/284 (47%), Positives = 177/284 (62%), Gaps = 6/284 (2%)
Query: 6   IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH 65
           I   H + +HD  +DYYGKRLAT SSD +IKI  V   T + +  L+GH+G VW V WAH
Sbjct: 6   IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 65
Query: 66  PKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125
           PKFG+ILASCS+DG V+IWKE N   W +  V   H +SVNS+ WAPHE G  L   SSD
Sbjct: 66  PKFGTILASCSYDGKVLIWKEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 124
Query: 126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDN 185
           G +SV   + +G      ID AH +GV S SWAP+T       +G  +  +K  +GG DN
Sbjct: 125 GKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADN 182
Query: 186 TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE 245
            VK+WK  +          L+ H+DWVRDVAW+P + L +S +AS S+D   IIWT   E
Sbjct: 183 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV-LLRSYLASVSQDRTCIIWTQDNE 241
Query: 246 GDQWEGKVLHDFKTP--VYRVSWSLTGNILAVADGNNNVTLWEE 287
              W+  +L + K P  ++R SWSL+GN+LA++ G+N VTLW+E
Sbjct: 242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 285

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score =  242 bits (617), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 134/284 (47%), Positives = 177/284 (62%), Gaps = 6/284 (2%)
Query: 6   IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH 65
           I   H + +HD  MDYYGKR+AT SSD +IKI  V   T + +  L+GH+G VW V WAH
Sbjct: 4   IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 66  PKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125
           PKFG+ILASCS+DG V+IWKE N   W +  V   H +SVNS+ WAPHE G  L   SSD
Sbjct: 64  PKFGTILASCSYDGKVMIWKEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD 122
Query: 126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDN 185
           G +SV   + +G      ID AH +GV S SWAP+T       +G  +  +K  +GG DN
Sbjct: 123 GKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADN 180
Query: 186 TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE 245
            VK+WK  +          L+ H+DWVRDVAW+P + L +S +AS S+D   IIWT   E
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV-LLRSYMASVSQDRTCIIWTQDNE 239
Query: 246 GDQWEGKVLHDFKTP--VYRVSWSLTGNILAVADGNNNVTLWEE 287
              W+  +L + K P  ++R SWSL+GN+LA++ G+N VTLW+E
Sbjct: 240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score =  241 bits (616), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 134/284 (47%), Positives = 177/284 (62%), Gaps = 6/284 (2%)
Query: 6   IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH 65
           I   H + +HD  +DYYGKRLAT SSD +IKI  V   T + +  L+GH+G VW V WAH
Sbjct: 4   IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 66  PKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125
           PKFG+ILASCS+DG V+IWKE N   W +  V   H +SVNS+ WAPHE G  L   SSD
Sbjct: 64  PKFGTILASCSYDGKVLIWKEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122
Query: 126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDN 185
           G +SV   + +G      ID AH +GV S SWAP+T       +G  +  +K  +GG DN
Sbjct: 123 GKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADN 180
Query: 186 TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE 245
            VK+WK  +          L+ H+DWVRDVAW+P + L +S +AS S+D   IIWT   E
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV-LLRSYLASVSQDRTCIIWTQDNE 239
Query: 246 GDQWEGKVLHDFKTP--VYRVSWSLTGNILAVADGNNNVTLWEE 287
              W+  +L + K P  ++R SWSL+GN+LA++ G+N VTLW+E
Sbjct: 240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score =  234 bits (598), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 133/284 (46%), Positives = 173/284 (60%), Gaps = 6/284 (2%)
Query: 6   IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH 65
           I   H + +HD   DYYGKR AT SSD +IKI  V   T + +  L+GH+G VW V WAH
Sbjct: 4   IANAHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 66  PKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125
           PKFG+ILASCS+DG V IWKE N   W +  V   H +SVNS+ WAPHE G  L   SSD
Sbjct: 64  PKFGTILASCSYDGKVXIWKEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSD 122
Query: 126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDN 185
           G +SV   + +G      ID AH +GV S SWAP+T       +G  +  +K  +GG DN
Sbjct: 123 GKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADN 180
Query: 186 TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE 245
            VK+WK  +          L+ H+DWVRDVAW+P + L +S  AS S+D   IIWT   E
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV-LLRSYXASVSQDRTCIIWTQDNE 239
Query: 246 GDQWEGKVLHDFKTP--VYRVSWSLTGNILAVADGNNNVTLWEE 287
              W+  +L + K P  ++R SWSL+GN+LA++ G+N VTLW+E
Sbjct: 240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283

>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21212 Length = 351

Iteration: 1
 Score =  108 bits (271), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 142/342 (41%), Gaps = 70/342 (20%)
Query: 4   QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLS--GHKGAVWEV 61
           Q  ++GH+D VHDV  D+YG+ +AT SSD  IK+  +  +TS      S   H  ++  +
Sbjct: 4   QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAI 63
Query: 62  AWAHPKFGSILASCSFDGTVIIWKEGNSNE------WIKDHVFEDHKSSVNSIDWAPHEL 115
            WA P++G I+AS S+D TV +W+E    E      W K     D K S+ S+ +AP  L
Sbjct: 64  DWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHL 123
Query: 116 GLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGF---- 171
           GL LAC  +DG + ++        D           +TS     S  P   + S F    
Sbjct: 124 GLKLACLGNDGILRLY--------DALEPSDLRSWTLTSEXKVLSIPPANHLQSDFCLSW 175
Query: 172 ----LDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKST 227
                 P +KL     +  +   +  +G  K+     L  H   +R ++WAP++G     
Sbjct: 176 CPSRFSP-EKLAVSALEQAIIYQRGKDG--KLHVAAKLPGHKSLIRSISWAPSIGRWYQL 232
Query: 228 IASASEDGKVIIWTVA------------------------------REGDQWEGKVL--- 254
           IA+  +DG++ I+ +                               R     E K     
Sbjct: 233 IATGCKDGRIRIFKITEKLSPLASEESLTNSNXFDNSADVDXDAQGRSDSNTEEKAELQS 292
Query: 255 ----------HDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286
                      D    V+ VSW+LTG IL+ A  +  V LW+
Sbjct: 293 NLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWK 334

>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21 Length = 351

Iteration: 1
 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 143/344 (41%), Gaps = 74/344 (21%)
Query: 4   QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLS--GHKGAVWEV 61
           Q  ++GH+D VHDV  D+YG+ +AT SSD  IK+  +  +TS      S   H  ++  +
Sbjct: 4   QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAI 63
Query: 62  AWAHPKFGSILASCSFDGTVIIWKEGNSNE------WIKDHVFEDHKSSVNSIDWAPHEL 115
            WA P++G I+AS S+D TV +W+E    E      W K     D K S+ S+ +AP  L
Sbjct: 64  DWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHL 123
Query: 116 GLCLACGSSDGNISVFTARADGGWD----TSRID------QAHPVGVTSVSWAPSTAPGA 165
           GL LAC  +DG + ++ A           TS +         H      +SW PS     
Sbjct: 124 GLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSR---- 179
Query: 166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPK 225
                   P +KL     +  +   +  +G  K+     L  H   +R ++WAP++G   
Sbjct: 180 ------FSP-EKLAVSALEQAIIYQRGKDG--KLHVAAKLPGHKSLIRSISWAPSIGRWY 230
Query: 226 STIASASEDGKVIIWTVA------------------------------REGDQWEGKVL- 254
             IA+  +DG++ I+ +                               R     E K   
Sbjct: 231 QLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAEL 290
Query: 255 ------------HDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286
                        D    V+ VSW+LTG IL+ A  +  V LW+
Sbjct: 291 QSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWK 334

>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX Length = 349

Iteration: 1
 Score =  108 bits (270), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 142/342 (41%), Gaps = 70/342 (20%)
Query: 4   QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLS--GHKGAVWEV 61
           Q  ++GH+D VHDV  D+YG+ +AT SSD  IK+  +  +TS      S   H  ++  +
Sbjct: 2   QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAI 61
Query: 62  AWAHPKFGSILASCSFDGTVIIWKEGNSNE------WIKDHVFEDHKSSVNSIDWAPHEL 115
            WA P++G I+AS S+D TV +W+E    E      W K     D K S+ S+ +AP  L
Sbjct: 62  DWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHL 121
Query: 116 GLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGF---- 171
           GL LAC  +DG + ++        D           +TS     S  P   + S F    
Sbjct: 122 GLKLACLGNDGILRLY--------DALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSW 173
Query: 172 ----LDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKST 227
                 P +KL     +  +   +  +G  K+     L  H   +R ++WAP++G     
Sbjct: 174 CPSRFSP-EKLAVSALEQAIIYQRGKDG--KLHVAAKLPGHKSLIRSISWAPSIGRWYQL 230
Query: 228 IASASEDGKVIIWTVA------------------------------REGDQWEGKVL--- 254
           IA+  +DG++ I+ +                               R     E K     
Sbjct: 231 IATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQS 290
Query: 255 ----------HDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286
                      D    V+ VSW+LTG IL+ A  +  V LW+
Sbjct: 291 NLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWK 332

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 122/280 (43%), Gaps = 42/280 (15%)
Query: 8   TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPK 67
           TGH  +V  VA    G+ +A+AS D ++K+    N   QHL  L+GH  +VW VA++   
Sbjct: 300 TGHSSSVWGVAFSPDGQTIASASDDKTVKLW---NRNGQHLQTLTGHSSSVWGVAFSPD- 355
Query: 68  FGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGN 127
            G  +AS S D TV +W   N N  +       H SSV  + ++P   G  +A  S D  
Sbjct: 356 -GQTIASASDDKTVKLW---NRNGQLL-QTLTGHSSSVRGVAFSPD--GQTIASASDDKT 408
Query: 128 ISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTV 187
           + +        W+ +        G +S  W          G  F    Q + S   D TV
Sbjct: 409 VKL--------WNRNGQLLQTLTGHSSSVW----------GVAFSPDDQTIASASDDKTV 450
Query: 188 KVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGD 247
           K+W   NG         L  H+  VR VA++P+      TIASAS+D  V +W   R G 
Sbjct: 451 KLWN-RNG----QLLQTLTGHSSSVRGVAFSPD----GQTIASASDDKTVKLWN--RNGQ 499
Query: 248 QWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287
             +   L    + V  V++S  G  +A A  +  V LW  
Sbjct: 500 LLQ--TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 537

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 122/275 (44%), Gaps = 36/275 (13%)
Query: 18  AMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKL--SGHKGAVWEVAWAHPKFGSILASC 75
           + D+    LAT S+D  IK++ V  +    +  L  + HK A+  VAW  P   S+LA+ 
Sbjct: 19  SFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAW-RPH-TSLLAAG 76
Query: 76  SFDGTVIIWKEGNSNEWIKDH----VFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVF 131
           SFD TV IW +  S +   +     + E H++ V  + W+    G  LA  S D ++ ++
Sbjct: 77  SFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND--GYYLATCSRDKSVWIW 134
Query: 132 TARADG-GWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVW 190
                G  ++   + Q H   V  V W PS A               L S   D+TV++W
Sbjct: 135 ETDESGEEYECISVLQEHSQDVKHVIWHPSEAL--------------LASSSYDDTVRIW 180
Query: 191 KLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA--REGDQ 248
           K Y+  W  +C   L  H   V    +    G+ +  + S S+D  V +W      E DQ
Sbjct: 181 KDYDDDW--ECVAVLNGHEGTVWSSDFDKTEGVFR--LCSGSDDSTVRVWKYMGDDEDDQ 236
Query: 249 WE---GKVLHDF-KTPVYRVSWSLTGNILAV-ADG 278
            E     +L D  K  VY V+W   G I +V ADG
Sbjct: 237 QEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADG 271

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 81/174 (46%), Gaps = 23/174 (13%)
Query: 119 LACGSSDGNISVFTARADGGWDTSRIDQ-AHPVGVTSVSWAPSTAPGALVGSGFLDPVQK 177
           LA GS+D  I + + + D       +D+ AH   + SV+W P T+               
Sbjct: 27  LATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSL-------------- 72
Query: 178 LCSGGCDNTVKVW---KLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASED 234
           L +G  D+TV +W   +  +  ++MD    ++ H + V+ VAW+ +       +A+ S D
Sbjct: 73  LAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND----GYYLATCSRD 128
Query: 235 GKVIIWTVAREGDQWEG-KVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE 287
             V IW     G+++E   VL +    V  V W  +  +LA +  ++ V +W++
Sbjct: 129 KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKD 182

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 106/249 (42%), Gaps = 39/249 (15%)
Query: 6   IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH 65
           +  GH+ TV  VA    G  LA+AS D +  I     +  + +  L GH+  V  VAWA 
Sbjct: 56  LSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWA- 114
Query: 66  PKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAP-HELGLCLACGSS 124
              G++LA+CS D +V +W+    +E+    V   H   V  + W P  EL   LA  S 
Sbjct: 115 -PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL---LASASY 170
Query: 125 DGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCD 184
           D  + ++    D  W      + H   V S+++ PS               Q+L S   D
Sbjct: 171 DDTVKLYREEED-DWVCCATLEGHESTVWSLAFDPSG--------------QRLASCSDD 215
Query: 185 NTVKVWKLY-----NGI--------WKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASA 231
            TV++W+ Y      G+        WK  C  +   H+  + D+AW    G     +A+A
Sbjct: 216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS-GFHSRTIYDIAWCQLTG----ALATA 270
Query: 232 SEDGKVIIW 240
             D  + ++
Sbjct: 271 CGDDAIRVF 279

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 113/244 (46%), Gaps = 32/244 (13%)
Query: 48  LAKLSGHKGA-VWEVAWAHPKFGSILASCSFDGTVIIW-KEGNSNEWIKDHVF-EDHKSS 104
           L ++  H  +  W +AW +P  G++LASC  D  + IW  EG+S  WI   V  E H+ +
Sbjct: 8   LGRVPAHPDSRCWFLAW-NPA-GTLLASCGGDRRIRIWGTEGDS--WICKSVLSEGHQRT 63
Query: 105 VNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG 164
           V  + W+P   G  LA  S D    ++    D  ++     + H   V SV+WAPS   G
Sbjct: 64  VRKVAWSP--CGNYLASASFDATTCIWKKNQD-DFECVTTLEGHENEVKSVAWAPS---G 117
Query: 165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLP 224
            L+ +         CS   D +V VW++     + +C   L  HT  V+ V W P+  L 
Sbjct: 118 NLLAT---------CSR--DKSVWVWEVDEED-EYECVSVLNSHTQDVKHVVWHPSQEL- 164
Query: 225 KSTIASASEDGKVIIWTVAREGDQWE-GKVLHDFKTPVYRVSWSLTGNILAVADGNNNVT 283
              +ASAS D  V ++    E D W     L   ++ V+ +++  +G  LA    +  V 
Sbjct: 165 ---LASASYDDTVKLYR--EEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVR 219
Query: 284 LWEE 287
           +W +
Sbjct: 220 IWRQ 223

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 104/250 (41%), Gaps = 33/250 (13%)
Query: 1   MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWE 60
           +P +    GH  +V    + +    + T + D  I++    N   + L +LSGH G VW 
Sbjct: 111 VPQRTTLRGHMTSV-ITCLQFEDNYVITGADDKMIRVYDSIN--KKFLLQLSGHDGGVWA 167
Query: 61  VAWAHPKFGSILASCSFDGTVIIW--KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLC 118
           + +AH   G IL S S D TV +W  K+G        HVFE H S+V  +D   ++    
Sbjct: 168 LKYAH---GGILVSGSTDRTVRVWDIKKGCCT-----HVFEGHNSTVRCLDIVEYKNIKY 219
Query: 119 LACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGAL-VGSGFLDPVQK 177
           +  GS D  + V+    +        +  +P+    V   P   P  + V  G +  V+ 
Sbjct: 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL----VFHTPEENPYFVGVLRGHMASVRT 275
Query: 178 -------LCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIAS 230
                  + SG  DNT+ VW     + +M C   L  HTD +    +       +    S
Sbjct: 276 VSGHGNIVVSGSYDNTLIVW----DVAQMKCLYILSGHTDRIYSTIYDH----ERKRCIS 327
Query: 231 ASEDGKVIIW 240
           AS D  + IW
Sbjct: 328 ASMDTTIRIW 337

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 102/250 (40%), Gaps = 33/250 (13%)
Query: 1   MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWE 60
           +P +    GH  +V    + +    + T + D  I++    N   + L +LSGH G VW 
Sbjct: 111 VPQRTTLRGHXTSV-ITCLQFEDNYVITGADDKXIRVYDSIN--KKFLLQLSGHDGGVWA 167
Query: 61  VAWAHPKFGSILASCSFDGTVIIW--KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLC 118
           + +AH   G IL S S D TV +W  K+G        HVFE H S+V  +D   ++    
Sbjct: 168 LKYAH---GGILVSGSTDRTVRVWDIKKGCCT-----HVFEGHNSTVRCLDIVEYKNIKY 219
Query: 119 LACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGAL-VGSGFLDPVQK 177
           +  GS D  + V+    +        +  +P+    V   P   P  + V  G    V+ 
Sbjct: 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL----VFHTPEENPYFVGVLRGHXASVRT 275
Query: 178 -------LCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIAS 230
                  + SG  DNT+ VW     + +  C   L  HTD +    +       +    S
Sbjct: 276 VSGHGNIVVSGSYDNTLIVWD----VAQXKCLYILSGHTDRIYSTIYDH----ERKRCIS 327
Query: 231 ASEDGKVIIW 240
           AS D  + IW
Sbjct: 328 ASXDTTIRIW 337

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 107/245 (43%), Gaps = 30/245 (12%)
Query: 4   QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAW 63
           ++   GH D+V D++ D+ GK LA+ S+D +IK+        + +  + GH   V  V+ 
Sbjct: 143 ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG--FECIRTMHGHDHNVSSVS- 199
Query: 64  AHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGS 123
             P  G  + S S D T+ +W E  +   +K   F  H+  V  +   P++ G  +A  S
Sbjct: 200 IMPN-GDHIVSASRDKTIKMW-EVQTGYCVK--TFTGHREWVRMV--RPNQDGTLIASCS 253
Query: 124 SDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV--------GSGFLDPV 175
           +D  + V+           R    H   V  +SWAP ++  ++          SG   P 
Sbjct: 254 NDQTVRVWVVATKECKAELR---EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPF 310
Query: 176 QKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG 235
             L SG  D T+K+W +  G+    C   L  H +WVR V +          I S ++D 
Sbjct: 311 --LLSGSRDKTIKMWDVSTGM----CLMTLVGHDNWVRGVLFHSGGKF----ILSCADDK 360
Query: 236 KVIIW 240
            + +W
Sbjct: 361 TLRVW 365

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 103/246 (41%), Gaps = 53/246 (21%)
Query: 1   MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWE 60
           +  ++I TGH  +V  + + Y  + + T SSD ++++  V  NT + L  L  H  AV  
Sbjct: 163 LECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDV--NTGEMLNTLIHHCEAV-- 216
Query: 61  VAWAHPKFGS-ILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCL 119
               H +F + ++ +CS D ++ +W   +  +     V   H+++VN +D+        +
Sbjct: 217 ---LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY----I 269
Query: 120 ACGSSDGNISVFTARADGGWDTS-----RIDQAHPVGVTSVSWAPSTAPGALVGSGFLDP 174
              S D  I V        W+TS     R    H  G+  + +                 
Sbjct: 270 VSASGDRTIKV--------WNTSTCEFVRTLNGHKRGIACLQYRD--------------- 306
Query: 175 VQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASED 234
            + + SG  DNT+++W +  G     C   L+ H + VR + +          I S + D
Sbjct: 307 -RLVVSGSSDNTIRLWDIECGA----CLRVLEGHEELVRCIRF------DNKRIVSGAYD 355
Query: 235 GKVIIW 240
           GK+ +W
Sbjct: 356 GKIKVW 361

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 91/207 (43%), Gaps = 33/207 (15%)
Query: 50  KLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDH-------VFEDHK 102
           +L GH+   + ++W +P     L S S D T+ +W   + N   K+H       +F  H 
Sbjct: 180 RLRGHQKEGYGLSW-NPNLNGYLLSASDDHTICLW---DINATPKEHRVIDAKNIFTGHT 235
Query: 103 SSVNSIDWAPHELGLCL-ACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPST 161
           + V  + W  H L   L    + D  + ++  R +     S    AH   V  +S+ P  
Sbjct: 236 AVVEDVAW--HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY- 292
Query: 162 APGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNL 221
                  S F+     L +G  D TV +W L N   K+  F   + H D +  V W+P+ 
Sbjct: 293 -------SEFI-----LATGSADKTVALWDLRNLKLKLHSF---ESHKDEIFQVQWSPH- 336
Query: 222 GLPKSTIASASEDGKVIIWTVAREGDQ 248
              ++ +AS+  D ++ +W +++ G++
Sbjct: 337 --NETILASSGTDRRLHVWDLSKIGEE 361

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 91/206 (44%), Gaps = 31/206 (15%)
Query: 50  KLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW------KEGNSNEWIKDHVFEDHKS 103
           +L GH+   + ++W +P     L S S D T+ +W      KEG   +     +F  H +
Sbjct: 172 RLRGHQKEGYGLSW-NPNLSGHLLSASDDHTICLWDISAVPKEGKVVD--AKTIFTGHTA 228
Query: 104 SVNSIDWAPHELGLCL-ACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTA 162
            V  + W  H L   L    + D  + ++  R++     S    AH   V  +S+ P   
Sbjct: 229 VVEDVSW--HLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPY-- 284
Query: 163 PGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLG 222
                 S F+     L +G  D TV +W L N   K+  F   + H D +  V W+P+  
Sbjct: 285 ------SEFI-----LATGSADKTVALWDLRNLKLKLHSF---ESHKDEIFQVQWSPH-- 328
Query: 223 LPKSTIASASEDGKVIIWTVAREGDQ 248
             ++ +AS+  D ++ +W +++ G++
Sbjct: 329 -NETILASSGTDRRLNVWDLSKIGEE 353

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 92/222 (41%), Gaps = 32/222 (14%)
Query: 4   QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKII--GVGNNTSQHLAKLSGHKGAVWEV 61
           + I TGH   V DVA     + L  + +D    +I     NNTS+    +  H   V  +
Sbjct: 226 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 285
Query: 62  AWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLAC 121
           ++ +P    ILA+ S D TV +W   N    +K H FE HK  +  + W+PH   + LA 
Sbjct: 286 SF-NPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETI-LAS 341
Query: 122 GSSDGNISVFTAR-----------ADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG 170
             +D  + V+               DG  +   I   H   ++  SW P+          
Sbjct: 342 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-------- 393
Query: 171 FLDPVQKLCSGGCDNTVKVWKLYNGIWKMD--CFPALQMHTD 210
                  +CS   DN ++VW++   ++  +    PA ++ T+
Sbjct: 394 -----WIICSVSEDNIMQVWQMAENVYNDEEPEIPASELETN 430

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 92/222 (41%), Gaps = 32/222 (14%)
Query: 4   QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKII--GVGNNTSQHLAKLSGHKGAVWEV 61
           + I TGH   V DVA     + L  + +D    +I     NNTS+    +  H   V  +
Sbjct: 224 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 283
Query: 62  AWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLAC 121
           ++ +P    ILA+ S D TV +W   N    +K H FE HK  +  + W+PH   + LA 
Sbjct: 284 SF-NPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETI-LAS 339
Query: 122 GSSDGNISVFTAR-----------ADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG 170
             +D  + V+               DG  +   I   H   ++  SW P+          
Sbjct: 340 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-------- 391
Query: 171 FLDPVQKLCSGGCDNTVKVWKLYNGIWKMD--CFPALQMHTD 210
                  +CS   DN ++VW++   ++  +    PA ++ T+
Sbjct: 392 -----WIICSVSEDNIMQVWQMAENVYNDEEPEIPASELETN 428

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 82/206 (39%), Gaps = 28/206 (13%)
Query: 4   QKIETGHEDTVHDVAMDYYGKRL-ATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVA 62
           + I TGH   V DVA     + L  + + D  + I    +NT+   + L     A     
Sbjct: 222 KAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCL 281
Query: 63  WAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACG 122
             +P    ILA+ S D TV +W   N    +K H FE HK  +  + W+PH   + LA  
Sbjct: 282 SFNPYSEFILATGSADKTVALWDLRNLK--LKLHTFESHKDEIFQVHWSPHNETI-LASS 338
Query: 123 SSDGNISVFTAR-----------ADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGF 171
            +D  ++V+               DG  +   I   H   ++  SW P+           
Sbjct: 339 GTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEP--------- 389
Query: 172 LDPVQKLCSGGCDNTVKVWKLYNGIW 197
                 +CS   DN +++W++   I+
Sbjct: 390 ----WVICSVSEDNIMQIWQMAENIY 411

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 31/206 (15%)
Query: 50  KLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW------KEGNSNEWIKDHVFEDHKS 103
           +L GH+   + ++W     G +L S S D TV +W      KEG   +     +F  H +
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLL-SASDDHTVCLWDINAGPKEGKIVD--AKAIFTGHSA 230
Query: 104 SVNSIDWAPHELGLCL-ACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTA 162
            V  + W  H L   L    + D  + ++  R++     S +  AH   V  +S+ P   
Sbjct: 231 VVEDVAW--HLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY-- 286
Query: 163 PGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLG 222
                 S F+     L +G  D TV +W L N   K+  F   + H D +  V W+P+  
Sbjct: 287 ------SEFI-----LATGSADKTVALWDLRNLKLKLHTF---ESHKDEIFQVHWSPH-- 330
Query: 223 LPKSTIASASEDGKVIIWTVAREGDQ 248
             ++ +AS+  D ++ +W +++ G++
Sbjct: 331 -NETILASSGTDRRLNVWDLSKIGEE 355

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 31/206 (15%)
Query: 50  KLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW------KEGNSNEWIKDHVFEDHKS 103
           +L GH+   + ++W     G +L S S D TV +W      KEG   +     +F  H +
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLL-SASDDHTVCLWDINAGPKEGKIVD--AKAIFTGHSA 230
Query: 104 SVNSIDWAPHELGLCL-ACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTA 162
            V  + W  H L   L    + D  + ++  R++     S +  AH   V  +S+ P   
Sbjct: 231 VVEDVAW--HLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY-- 286
Query: 163 PGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLG 222
                 S F+     L +G  D TV +W L N   K+  F   + H D +  V W+P+  
Sbjct: 287 ------SEFI-----LATGSADKTVALWDLRNLKLKLHTF---ESHKDEIFQVHWSPH-- 330
Query: 223 LPKSTIASASEDGKVIIWTVAREGDQ 248
             ++ +AS+  D ++ +W +++ G++
Sbjct: 331 -NETILASSGTDRRLNVWDLSKIGEE 355

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 98/249 (39%), Gaps = 54/249 (21%)
Query: 25  RLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW 84
           RL  A S  + +++G+  N  + + ++ G      ++    P  G  + S   DG ++++
Sbjct: 17  RLRRAES--TRRVLGLELNKDRDVERIHGGGINTLDI---EPVEGRYMLSGGSDGVIVLY 71
Query: 85  KEGNSNEWI-----------KDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTA 133
              NS+              +DH  + H+ SV ++ W PH+ G+     S D  + V   
Sbjct: 72  DLENSSRQSYYTCKAVCSIGRDHP-DVHRYSVETVQWYPHDTGM-FTSSSFDKTLKV--- 126
Query: 134 RADGGWDTSRIDQAHPVG----VTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKV 189
                WDT+ +  A        V S   +P +    LV  G   P  +LC          
Sbjct: 127 -----WDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD--------- 172
Query: 190 WKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG--- 246
             L +G     C   LQ H   +  V+W+P        +A+AS D +V +W V R     
Sbjct: 173 --LKSG----SCSHILQGHRQEILAVSWSPRYDY---ILATASADSRVKLWDVRRASGCL 223
Query: 247 ---DQWEGK 252
              DQ  GK
Sbjct: 224 ITLDQHNGK 232

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 85/195 (43%), Gaps = 29/195 (14%)
Query: 50  KLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSID 109
           +L GH   V +VA ++   G+   S S+D ++ +W   N     K   F  H   V S+ 
Sbjct: 62  RLEGHSAFVSDVALSNN--GNFAVSASWDHSLRLWNLQNGQCQYK---FLGHTKDVLSVA 116
Query: 110 WAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS 169
           ++P    +    G  D  + V+  + +     SR   AH   V+ V ++PS     +V  
Sbjct: 117 FSPDNRQI--VSGGRDNALRVWNVKGECMHTLSR--GAHTDWVSCVRFSPSLDAPVIV-- 170
Query: 170 GFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIA 229
                     SGG DN VKVW L  G    D    L+ HT++V  V  +P+     S  A
Sbjct: 171 ----------SGGWDNLVKVWDLATGRLVTD----LKGHTNYVTSVTVSPD----GSLCA 212
Query: 230 SASEDGKVIIWTVAR 244
           S+ +DG   +W + +
Sbjct: 213 SSDKDGVARLWDLTK 227

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 27/195 (13%)
Query: 51  LSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK--EGNSNEWIKDHVFEDHKSSVNSI 108
           L GH G V ++A   P+F  ++ S S D T+I+WK     +N  I       H   V+ +
Sbjct: 11  LKGHNGWVTQIA-TTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 69
Query: 109 DWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG 168
                         SSDG  ++      G WD +        G T+  +   T    ++ 
Sbjct: 70  ------------VISSDGQFAL-----SGSWDGTLRLWDLTTGTTTRRFVGHTKD--VLS 110
Query: 169 SGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTI 228
             F    +++ SG  D T+K+W    G+ K       + H++WV  V ++PN   P   I
Sbjct: 111 VAFSSDNRQIVSGSRDKTIKLWNTL-GVCKYTVQD--ESHSEWVSCVRFSPNSSNP--II 165
Query: 229 ASASEDGKVIIWTVA 243
            S   D  V +W +A
Sbjct: 166 VSCGWDKLVKVWNLA 180

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 27/195 (13%)
Query: 51  LSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK--EGNSNEWIKDHVFEDHKSSVNSI 108
           L GH G V ++A   P+F  ++ S S D T+I+WK     +N  I       H   V+ +
Sbjct: 34  LKGHNGWVTQIA-TTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 92
Query: 109 DWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG 168
                         SSDG  ++      G WD +        G T+  +   T    ++ 
Sbjct: 93  ------------VISSDGQFAL-----SGSWDGTLRLWDLTTGTTTRRFVGHTKD--VLS 133
Query: 169 SGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTI 228
             F    +++ SG  D T+K+W    G+ K       + H++WV  V ++PN   P   I
Sbjct: 134 VAFSSDNRQIVSGSRDKTIKLWNTL-GVCKYTVQD--ESHSEWVSCVRFSPNSSNP--II 188
Query: 229 ASASEDGKVIIWTVA 243
            S   D  V +W +A
Sbjct: 189 VSCGWDKLVKVWNLA 203

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 93/232 (40%), Gaps = 41/232 (17%)
Query: 9   GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKF 68
           GH  TV    M  + KR+ + S D ++++  +   T Q L  L GH  AV  V +     
Sbjct: 197 GHTSTVR--CMHLHEKRVVSGSRDATLRVWDI--ETGQCLHVLMGHVAAVRCVQYD---- 248
Query: 69  GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNI 128
           G  + S ++D  V +W           H  + H + V S+ +     G+ +  GS D +I
Sbjct: 249 GRRVVSGAYDFMVKVWDPETETCL---HTLQGHTNRVYSLQFD----GIHVVSGSLDTSI 301
Query: 129 SVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVK 188
            V        WD    +  H +          T   +L  SG       L SG  D+TVK
Sbjct: 302 RV--------WDVETGNCIHTL----------TGHQSLT-SGMELKDNILVSGNADSTVK 342
Query: 189 VWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIW 240
           +W +  G     C   LQ      +  +    L   K+ + ++S+DG V +W
Sbjct: 343 IWDIKTG----QCLQTLQGPN---KHQSAVTCLQFNKNFVITSSDDGTVKLW 387

>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 96/237 (40%), Gaps = 29/237 (12%)
Query: 10  HEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFG 69
           H+D V  +++   G +  +   D+S+K+  +       L   + H   V  VA A P   
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV--LKSYNAHSSEVNCVA-ACPGKD 194
Query: 70  SILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNIS 129
           +I  SC  DG +++W         +   F    +   S+ W P E     ACG   GN+S
Sbjct: 195 TIFLSCGEDGRILLWDTRKPKPATRID-FCASDTIPTSVTWHP-EKDDTFACGDETGNVS 252
Query: 130 VFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKV 189
           +   +     D+++    H   +T ++++  ++P       FL  + + C      TV V
Sbjct: 253 LVNIKNP---DSAQTSAVHSQNITGLAYSYHSSP-------FLASISEDC------TVAV 296
Query: 190 WKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG 246
                     + F  L  H D+V  VAW+P   L  S   +   D KV+   +  EG
Sbjct: 297 LDADFS----EVFRDLS-HRDFVTGVAWSP---LDHSKFTTVGWDHKVLHHHLPSEG 345

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
Query: 10  HEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFG 69
           H D V+       G+R+A+  +D ++++      T + L  +  H+  V   A++     
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKA--ETGEKLLDIKAHEDEVLCCAFSSD--D 676
Query: 70  SILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125
           S +A+CS D  V IW           H +++H   VN   +      L LA GS+D
Sbjct: 677 SYIATCSADKKVKIWDSATGKLV---HTYDEHSEQVNCCHFTNKSNHLLLATGSND 729

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/294 (20%), Positives = 109/294 (37%), Gaps = 69/294 (23%)
Query: 36  KIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNE---- 91
           ++  +G    +    L GH   V  + W   K    + S S DG VI+W    +N+    
Sbjct: 45  RVEALGQFVMKTRRTLKGHGNKVLCMDWCKDK--RRIVSSSQDGKVIVWDSFTTNKEHAV 102
Query: 92  -----WIKDHVFE-----------DHKSSVNSIDWAPHE------------LGLCLACGS 123
                W+    +            D+K SV  + +  +E                 AC  
Sbjct: 103 TMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSF 162
Query: 124 SDGNISVFTARADGG---WD--TSRIDQA---HPVGVTSVSWAPSTAPGALVGSGFLDPV 175
           ++ ++ + TA  DG    WD  + ++ Q+   H   V  +  APS      V        
Sbjct: 163 TNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFV-------- 214
Query: 176 QKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG 235
               SGGCD    VW + +G     C  A + H   V  V + P+        AS S+D 
Sbjct: 215 ----SGGCDKKAMVWDMRSG----QCVQAFETHESDVNSVRYYPS----GDAFASGSDDA 262
Query: 236 KVIIWTVAREGDQWEGKVLHDFKTPVY---RVSWSLTGNILAVADGNNNVTLWE 286
              ++ +  + +      ++  ++ ++    V +SL+G +L     +  + +W+
Sbjct: 263 TCRLYDLRADREV----AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWD 312

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
Query: 10  HEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFG 69
           H D V+       G+R+A+  +D ++++      T + L  +  H+  V   A++     
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKA--ETGEKLLDIKAHEDEVLCCAFSSD--D 669
Query: 70  SILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125
           S +A+CS D  V IW           H +++H   VN   +      L LA GS+D
Sbjct: 670 SYIATCSADKKVKIWDSATGKLV---HTYDEHSEQVNCCHFTNKSNHLLLATGSND 722

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 87/209 (41%), Gaps = 33/209 (15%)
Query: 50  KLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSID 109
           +L+GH   V +V  +    G    S S+DG + +W        +    F  H   V S+ 
Sbjct: 425 RLTGHSHFVEDVVLSSD--GQFALSGSWDGELRLWDLAAG---VSTRRFVGHTKDVLSVA 479
Query: 110 WAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS 169
           ++     +  A  S D  I ++    +  +  S   + H   V+ V ++P+T        
Sbjct: 480 FSLDNRQIVSA--SRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT-------- 529
Query: 170 GFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIA 229
             L P   + S   D TVKVW L N   +      L  HT +V  VA +P+     S  A
Sbjct: 530 --LQPT--IVSASWDKTVKVWNLSNCKLR----STLAGHTGYVSTVAVSPD----GSLCA 577
Query: 230 SASEDGKVIIWTVAREGDQWEGKVLHDFK 258
           S  +DG V++W +A      EGK L+  +
Sbjct: 578 SGGKDGVVLLWDLA------EGKKLYSLE 600

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 89/231 (38%), Gaps = 31/231 (13%)
Query: 65  HPKFGSILASCSFDGTVIIWKEGNSNEWIKD-HVFEDHKSSVNSIDWAPHELGLCLACGS 123
           +PKF +++   S  G  ++   G +    K+  +   H + V  I W PH   + +A GS
Sbjct: 43  NPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNV-IASGS 101
Query: 124 SDGNISVFTARADGGWDTSRID-----QAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKL 178
            D  + V+    DGG      +     + H   V  V+W P+                 L
Sbjct: 102 EDCTVMVWEI-PDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQ-------------NVL 147
Query: 179 CSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVI 238
            S GCDN + VW +  G   +   P   +H D +  V W+ +  L    I ++  D +V 
Sbjct: 148 LSAGCDNVILVWDVGTGAAVLTLGP--DVHPDTIYSVDWSRDGAL----ICTSCRDKRVR 201
Query: 239 IWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVA---DGNNNVTLWE 286
           +    +     E    H+   PV+ V  S  G IL           V LW+
Sbjct: 202 VIEPRKGTVVAEKDRPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWD 251

>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 377

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 86  EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRID 145
           E + N W     F DH   V  +DWAP      + C S D N  V+  R DG W  + + 
Sbjct: 39  EQDGNGWKHARTFSDHDKIVTCVDWAPKS-NRIVTC-SQDRNAYVYEKRPDGTWKQTLVL 96
Query: 146 QAHPVGVTSVSWAPSTAPGALVGSG 170
                  T V W+P+    A VGSG
Sbjct: 97  LRLNRAATFVRWSPNEDKFA-VGSG 120

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 104/276 (37%), Gaps = 46/276 (16%)
Query: 40  VGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFE 99
           VG    +    L GH   ++ + W       +L S S DG +IIW    +N   K H   
Sbjct: 51  VGRIQMRTRRTLRGHLAKIYAMHWGTDS--RLLVSASQDGKLIIWDSYTTN---KVHAIP 105
Query: 100 DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA-DGGWDTSRIDQAHPVGVTSVSWA 158
              S V +  +AP   G  +ACG  D   S++  +  +G    SR    H   ++   + 
Sbjct: 106 LRSSWVMTCAYAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 163
Query: 159 PS----TAPG----AL------------------VGSGFLDPVQKL-CSGGCDNTVKVWK 191
                 T+ G    AL                  V S  L P  +L  SG CD + K+W 
Sbjct: 164 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 223
Query: 192 LYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEG 251
           +  G+    C      H   +  + + PN     +  A+ S+D    ++ +    DQ   
Sbjct: 224 VREGM----CRQTFTGHESDINAICFFPN----GNAFATGSDDATCRLFDL--RADQELM 273
Query: 252 KVLHD-FKTPVYRVSWSLTGNILAVADGNNNVTLWE 286
              HD     +  VS+S +G +L     + N  +W+
Sbjct: 274 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 309

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 104/276 (37%), Gaps = 46/276 (16%)
Query: 40  VGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFE 99
           VG    +    L GH   ++ + W       +L S S DG +IIW    +N   K H   
Sbjct: 40  VGRIQMRTRRTLRGHLAKIYAMHWGTDS--RLLVSASQDGKLIIWDSYTTN---KVHAIP 94
Query: 100 DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA-DGGWDTSRIDQAHPVGVTSVSWA 158
              S V +  +AP   G  +ACG  D   S++  +  +G    SR    H   ++   + 
Sbjct: 95  LRSSWVMTCAYAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152
Query: 159 PS----TAPG----AL------------------VGSGFLDPVQKL-CSGGCDNTVKVWK 191
                 T+ G    AL                  V S  L P  +L  SG CD + K+W 
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 192 LYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEG 251
           +  G+    C      H   +  + + PN     +  A+ S+D    ++ +    DQ   
Sbjct: 213 VREGM----CRQTFTGHESDINAICFFPN----GNAFATGSDDATCRLFDL--RADQELM 262
Query: 252 KVLHD-FKTPVYRVSWSLTGNILAVADGNNNVTLWE 286
              HD     +  VS+S +G +L     + N  +W+
Sbjct: 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 104/276 (37%), Gaps = 46/276 (16%)
Query: 40  VGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFE 99
           VG    +    L GH   ++ + W       +L S S DG +IIW    +N   K H   
Sbjct: 40  VGRIQMRTRRTLRGHLAKIYAMHWGTDS--RLLVSASQDGKLIIWDSYTTN---KVHAIP 94
Query: 100 DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA-DGGWDTSRIDQAHPVGVTSVSWA 158
              S V +  +AP   G  +ACG  D   S++  +  +G    SR    H   ++   + 
Sbjct: 95  LRSSWVMTCAYAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152
Query: 159 PS----TAPG----AL------------------VGSGFLDPVQKL-CSGGCDNTVKVWK 191
                 T+ G    AL                  V S  L P  +L  SG CD + K+W 
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 192 LYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEG 251
           +  G+    C      H   +  + + PN     +  A+ S+D    ++ +    DQ   
Sbjct: 213 VREGM----CRQTFTGHESDINAICFFPN----GNAFATGSDDATCRLFDL--RADQELM 262
Query: 252 KVLHD-FKTPVYRVSWSLTGNILAVADGNNNVTLWE 286
              HD     +  VS+S +G +L     + N  +W+
Sbjct: 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	288
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.98
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.93
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.91
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.9
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.89
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.89
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.88
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.88
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.87
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.86
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.86
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.86
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.85
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.85
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.85
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.84
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.84
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.84
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.84
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.84
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.82
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.82
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.81
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.8
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.79
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.77
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.77
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.76
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.75
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.73
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.72
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.7
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.7
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.66
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.66
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.65
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.64
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.64
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.61
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.6
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.6
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.59
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.59
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.58
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.56
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.56
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.55
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.49
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.49
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.48
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.48
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.46
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.44
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.43
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.41
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.4
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.39
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.38
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.38
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.37
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.35
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.34
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.33
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.31
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.31
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.27
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.26
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.25
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.22
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.2
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.19
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.17
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.17
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.16
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.13
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.13
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.12
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.09
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.07
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.01
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.95
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.87
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.81
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.8
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.8
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.75
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.69
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.68
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.68
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.66
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.56
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.55
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.34
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.23
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.22
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.17
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.09
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.02
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.01
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.01
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.97
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.96
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.95
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.92
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.88
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.88
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.85
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.84
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.78
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.78
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.76
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.73
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.72
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.69
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.69
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.68
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.65
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.65
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.57
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.56
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.5
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.43
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.3
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.27
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.04
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.02
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.01
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.88
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.86
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.83
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.75
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.7
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.67
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.67
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.55
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.49
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.49
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.25
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.25
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.87
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.78
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	95.74
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	95.71
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.55
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	95.43
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.4
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.28
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	94.83
3kya_A	496	Putative phosphatase; structural genomics, joint c	94.81
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	94.69
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	94.58
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	94.45
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	94.41
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	94.28
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	94.23
3v9f_A	781	Two-component system sensor histidine kinase/RESP	94.19
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	94.1
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	94.08
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	94.07
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	93.79
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	93.77
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	93.74
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	93.5
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	93.46
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	93.07
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	92.91
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	92.59
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	92.56
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	92.44
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	92.29
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	91.91
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	91.75
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	91.6
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	91.55
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	91.28
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	91.1
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	89.14
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	88.8
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	88.6
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	88.29
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	88.18
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	87.26
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	87.18
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	84.55
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	84.42
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	83.2
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	82.45
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	82.22
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	80.14

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.9e-47  Score=323.49  Aligned_cols=278  Identities=47%  Similarity=0.836  Sum_probs=220.1

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      ++.+|++.|.+++|+|+|++|++|+.|++|+||++.....+.+.++.+|.+.|++++|+++.++++|+|||.|++|++||
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd   83 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK   83 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence            46799999999999999999999999999999999654456788999999999999998654578999999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      +.++. +.....+..|...|.+++|+|+..+.++++|+.|++|++||++...... .....+|...|.++.|+|+.....
T Consensus        84 ~~~~~-~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~-~~~~~~h~~~v~~~~~~p~~~~~~  161 (297)
T 2pm7_B           84 EENGR-WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS-PIIIDAHAIGVNSASWAPATIEED  161 (297)
T ss_dssp             BSSSC-BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC-CEEEECCSSCEEEEEECCCC----
T ss_pred             cCCCc-eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee-eeeeecccCccceEeecCCccccc
Confidence            97653 2233456789999999999997546789999999999999998654322 234568999999999999752110


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE  245 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~  245 (288)
                      .. .....++++|++|+.|++|+|||++++.....+...+.+|..+|.+|+|+|+.. .+.+||+++.|++|++||++..
T Consensus       162 ~~-~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~-~~~~las~s~D~~v~iWd~~~~  239 (297)
T 2pm7_B          162 GE-HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL-LRSYMASVSQDRTCIIWTQDNE  239 (297)
T ss_dssp             ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS-SSEEEEEEETTSCEEEEEESST
T ss_pred             cc-CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCC-CceEEEEEECCCcEEEEEeCCC
Confidence            00 000112368999999999999999876433345667889999999999999731 1368999999999999998754


Q ss_pred             CCcccceEe--eccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          246 GDQWEGKVL--HDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       246 ~~~~~~~~~--~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ........+  ..+...|.+++|+|+|++||+++.|++|+||+.
T Consensus       240 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~  283 (297)
T 2pm7_B          240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (297)
T ss_dssp             TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred             CCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence            322222233  456788999999999999999999999999984

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.4e-47  Score=327.62  Aligned_cols=282  Identities=53%  Similarity=0.998  Sum_probs=218.1

Q ss_pred             CccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510            4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVII   83 (288)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i   83 (288)
                      +.++.+|++.|++++|+|+|++|++|+.|++|+|||+..+....+..+.+|.+.|++++|+++.++++|+|||.|++|++
T Consensus         6 ~~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i   85 (316)
T 3bg1_A            6 NTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII   85 (316)
T ss_dssp             --------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred             eeecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence            34567999999999999999999999999999999996543345788999999999999986545789999999999999


Q ss_pred             eecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCC
Q 036510           84 WKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAP  163 (288)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~  163 (288)
                      ||+.++. +.....+.+|...|++++|+|+..+.++++|+.|++|++||++....+.......+|...+.++.|+|+...
T Consensus        86 Wd~~~~~-~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  164 (316)
T 3bg1_A           86 WREENGT-WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP  164 (316)
T ss_dssp             ECCSSSC-CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred             EECCCCc-ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence            9997643 224456778999999999999865678999999999999999876544434455689999999999998533


Q ss_pred             Cceeccc---ccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEE
Q 036510          164 GALVGSG---FLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIW  240 (288)
Q Consensus       164 ~~~~~~~---~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw  240 (288)
                      +.+....   ....+.+|++|+.|++|++||++.+. ..++...+.+|..+|++++|+|+....+.+||+|+.|++|++|
T Consensus       165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw  243 (316)
T 3bg1_A          165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG-QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW  243 (316)
T ss_dssp             ------CCSCCCCCCCBEECCBTTSBCCEEEECTTS-CEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEE
T ss_pred             ccccccccccCccccceEEEecCCCeEEEEEeCCCC-ccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEE
Confidence            2221100   01123689999999999999997531 1234567889999999999999853334789999999999999


Q ss_pred             EeecCC-CcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          241 TVAREG-DQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       241 ~~~~~~-~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ++.... .......+..|..+|++++|+|+|++||+|+.|++|+||+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~  291 (316)
T 3bg1_A          244 TCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKE  291 (316)
T ss_dssp             ECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred             EccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence            987521 11122345677889999999999999999999999999984

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6.6e-44  Score=304.49  Aligned_cols=254  Identities=18%  Similarity=0.197  Sum_probs=214.1

Q ss_pred             CCCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcE
Q 036510            2 PPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTV   81 (288)
Q Consensus         2 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v   81 (288)
                      .+.+.+.+|.+.|.+++|+|+|++|++|+.|++|++||+..  ...+..+.+|...|.+++|+++  +++|++|+.|++|
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~s~d~~i   79 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYET--QVEVRSIQVTETPVRAGKFIAR--KNWIIVGSDDFRI   79 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEEEGG--GTEEEEEETTSEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC--CceeEEeeccCCcEEEEEEeCC--CCEEEEECCCCEE
Confidence            34567889999999999999999999999999999999854  4678889999999999999865  8899999999999


Q ss_pred             EEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCC
Q 036510           82 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPST  161 (288)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~  161 (288)
                      ++||+.++.   ....+.+|...|.+++|+|+  +.++++|+.|++|++||++.+.  .......+|...|.++.|+|..
T Consensus        80 ~vwd~~~~~---~~~~~~~h~~~v~~~~~~~~--~~~l~sgs~D~~v~lWd~~~~~--~~~~~~~~h~~~v~~v~~~p~~  152 (304)
T 2ynn_A           80 RVFNYNTGE---KVVDFEAHPDYIRSIAVHPT--KPYVLSGSDDLTVKLWNWENNW--ALEQTFEGHEHFVMCVAFNPKD  152 (304)
T ss_dssp             EEEETTTCC---EEEEEECCSSCEEEEEECSS--SSEEEEEETTSCEEEEEGGGTT--EEEEEECCCCSCEEEEEECTTC
T ss_pred             EEEECCCCc---EEEEEeCCCCcEEEEEEcCC--CCEEEEECCCCeEEEEECCCCc--chhhhhcccCCcEEEEEECCCC
Confidence            999998765   45668899999999999998  5689999999999999998653  2334567899999999999964


Q ss_pred             CCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEE
Q 036510          162 APGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT  241 (288)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~  241 (288)
                      .             .+|++|+.|++|++||++.+...   .....+|...|..+.|+|..  .+.+|++|+.|++|++||
T Consensus       153 ~-------------~~l~sgs~D~~v~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~--~~~~l~s~s~D~~i~iWd  214 (304)
T 2ynn_A          153 P-------------STFASGCLDRTVKVWSLGQSTPN---FTLTTGQERGVNYVDYYPLP--DKPYMITASDDLTIKIWD  214 (304)
T ss_dssp             T-------------TEEEEEETTSEEEEEETTCSSCS---EEEECCCTTCEEEEEECCST--TCCEEEEEETTSEEEEEE
T ss_pred             C-------------CEEEEEeCCCeEEEEECCCCCcc---ceeccCCcCcEEEEEEEEcC--CCCEEEEEcCCCeEEEEe
Confidence            2             68999999999999998765311   11224566789999999842  246899999999999999


Q ss_pred             eecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          242 VAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ++...   ....+.+|...|.+++|+|++++|++|+.|++|+|||.
T Consensus       215 ~~~~~---~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~  257 (304)
T 2ynn_A          215 YQTKS---CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS  257 (304)
T ss_dssp             TTTTE---EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred             CCCCc---cceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            87531   23455678889999999999999999999999999995

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.7e-42  Score=298.81  Aligned_cols=257  Identities=29%  Similarity=0.483  Sum_probs=212.1

Q ss_pred             ccccccc-ceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEE-EeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510            6 IETGHED-TVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAK-LSGHKGAVWEVAWAHPKFGSILASCSFDGTVII   83 (288)
Q Consensus         6 ~~~~h~~-~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i   83 (288)
                      .+.+|.+ .|..++|+|+|++|++|+.|++|+||++.......... ..+|...|.+++|+++  +++|++++.|+++++
T Consensus        10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--g~~l~s~s~D~~v~i   87 (345)
T 3fm0_A           10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC--GNYLASASFDATTCI   87 (345)
T ss_dssp             EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTT--SSEEEEEETTSCEEE
T ss_pred             eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCC--CCEEEEEECCCcEEE
Confidence            4568987 99999999999999999999999999986543222222 3689999999999874  899999999999999


Q ss_pred             eecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCC
Q 036510           84 WKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAP  163 (288)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~  163 (288)
                      |+..... ......+.+|...|.+++|+|+  +.+|++|+.|++|++||++............+|...|.++.|+|++  
T Consensus        88 w~~~~~~-~~~~~~~~~h~~~v~~v~~sp~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~--  162 (345)
T 3fm0_A           88 WKKNQDD-FECVTTLEGHENEVKSVAWAPS--GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ--  162 (345)
T ss_dssp             EEECCC--EEEEEEECCCSSCEEEEEECTT--SSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSS--
T ss_pred             EEccCCC-eEEEEEccCCCCCceEEEEeCC--CCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCC--
Confidence            9986543 3345678899999999999998  6789999999999999998765554455677899999999999987  


Q ss_pred             CceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEee
Q 036510          164 GALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA  243 (288)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~  243 (288)
                                  .+|++++.|++|++||++++..  .+...+.+|...|.+++|+|++    ++|++|+.|++|++|+..
T Consensus       163 ------------~~l~s~s~d~~i~~w~~~~~~~--~~~~~~~~h~~~v~~l~~sp~g----~~l~s~s~D~~v~iW~~~  224 (345)
T 3fm0_A          163 ------------ELLASASYDDTVKLYREEEDDW--VCCATLEGHESTVWSLAFDPSG----QRLASCSDDRTVRIWRQY  224 (345)
T ss_dssp             ------------SCEEEEETTSCEEEEEEETTEE--EEEEEECCCSSCEEEEEECTTS----SEEEEEETTSCEEEEEEE
T ss_pred             ------------CEEEEEeCCCcEEEEEecCCCE--EEEEEecCCCCceEEEEECCCC----CEEEEEeCCCeEEEeccc
Confidence                        7899999999999999987632  3455778999999999999984    789999999999999986


Q ss_pred             cCCCccc------------ceEeec-cccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          244 REGDQWE------------GKVLHD-FKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       244 ~~~~~~~------------~~~~~~-~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      .......            ...+.+ |...|++++|+|++..|++++.|++|++|+.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~  281 (345)
T 3fm0_A          225 LPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQE  281 (345)
T ss_dssp             CTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEE
T ss_pred             cCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEe
Confidence            4321100            011222 5678999999999999999999999999984

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=9.1e-43  Score=302.78  Aligned_cols=247  Identities=18%  Similarity=0.195  Sum_probs=201.5

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCce--eeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510            9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQ--HLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE   86 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~   86 (288)
                      .|+..|.+++|+|++ +|++|+.|++|+|||+..+...  ....+.+|.+.|++++|+++  +++|++|+.|++|++||+
T Consensus        80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd--g~~l~sgs~d~~i~iwd~  156 (344)
T 4gqb_B           80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSS--GTQAVSGSKDICIKVWDL  156 (344)
T ss_dssp             EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT--SSEEEEEETTSCEEEEET
T ss_pred             ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCC--CCEEEEEeCCCeEEEEEC
Confidence            356789999999986 7889999999999999654321  23345699999999999865  899999999999999999


Q ss_pred             CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCce
Q 036510           87 GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGAL  166 (288)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~  166 (288)
                      .++.   ....+.+|...|++++|+|++ ..++++|+.|++|++||++.+...... ....|...+.++.|+|++.    
T Consensus       157 ~~~~---~~~~~~~h~~~V~~~~~~~~~-~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~----  227 (344)
T 4gqb_B          157 AQQV---VLSSYRAHAAQVTCVAASPHK-DSVFLSCSEDNRILLWDTRCPKPASQI-GCSAPGYLPTSLAWHPQQS----  227 (344)
T ss_dssp             TTTE---EEEEECCCSSCEEEEEECSSC-TTEEEEEETTSCEEEEETTSSSCEEEC-C----CCCEEEEEECSSCT----
T ss_pred             CCCc---EEEEEcCcCCceEEEEecCCC-CCceeeeccccccccccccccceeeee-ecceeeccceeeeecCCCC----
Confidence            8764   456788999999999999985 356899999999999999876543221 1234556789999999763    


Q ss_pred             ecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCC
Q 036510          167 VGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG  246 (288)
Q Consensus       167 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~  246 (288)
                               ++|++|+.|++|+|||++++    +++..+.+|...|++++|+|++   ..+||+||.|++|+|||++.. 
T Consensus       228 ---------~~l~sg~~dg~v~~wd~~~~----~~~~~~~~h~~~v~~v~fsp~g---~~~lasgs~D~~i~vwd~~~~-  290 (344)
T 4gqb_B          228 ---------EVFVFGDENGTVSLVDTKST----SCVLSSAVHSQCVTGLVFSPHS---VPFLASLSEDCSLAVLDSSLS-  290 (344)
T ss_dssp             ---------TEEEEEETTSEEEEEESCC------CCEEEECCSSCEEEEEECSSS---SCCEEEEETTSCEEEECTTCC-
T ss_pred             ---------cceEEeccCCcEEEEECCCC----cEEEEEcCCCCCEEEEEEccCC---CeEEEEEeCCCeEEEEECCCC-
Confidence                     67899999999999999876    4567789999999999999985   357999999999999998643 


Q ss_pred             CcccceEeeccccCeEEEEeecCCC-EEEEEeCCCcEEEeEc
Q 036510          247 DQWEGKVLHDFKTPVYRVSWSLTGN-ILAVADGNNNVTLWEE  287 (288)
Q Consensus       247 ~~~~~~~~~~~~~~i~~~~~spdg~-~l~s~~~d~~v~~w~~  287 (288)
                         +...+.+|.+.|++++|||+|+ +|++|+.|++|++|++
T Consensus       291 ---~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v  329 (344)
T 4gqb_B          291 ---ELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVV  329 (344)
T ss_dssp             ---EEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred             ---cEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence               1233567889999999999986 5779999999999985

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.7e-42  Score=298.82  Aligned_cols=259  Identities=27%  Similarity=0.474  Sum_probs=213.4

Q ss_pred             ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510            7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE   86 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~   86 (288)
                      ..+|++.|.+++|+|+|++|++|+.|+++++|++.....+.+..+.+|...|.+++|+++  +++|++++.|++|++||+
T Consensus        57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~--~~~l~s~s~D~~v~iwd~  134 (345)
T 3fm0_A           57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS--GNLLATCSRDKSVWVWEV  134 (345)
T ss_dssp             CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTT--SSEEEEEETTSCEEEEEE
T ss_pred             ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCC--CCEEEEEECCCeEEEEEC
Confidence            468999999999999999999999999999999876555678889999999999999864  899999999999999999


Q ss_pred             CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCce
Q 036510           87 GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGAL  166 (288)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~  166 (288)
                      ...........+..|...|.+++|+|+  +.++++|+.|++|++|+.+.+. +.......+|...|.++.|+|++     
T Consensus       135 ~~~~~~~~~~~~~~h~~~v~~~~~~p~--~~~l~s~s~d~~i~~w~~~~~~-~~~~~~~~~h~~~v~~l~~sp~g-----  206 (345)
T 3fm0_A          135 DEEDEYECVSVLNSHTQDVKHVVWHPS--QELLASASYDDTVKLYREEEDD-WVCCATLEGHESTVWSLAFDPSG-----  206 (345)
T ss_dssp             CTTSCEEEEEEECCCCSCEEEEEECSS--SSCEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECTTS-----
T ss_pred             CCCCCeEEEEEecCcCCCeEEEEECCC--CCEEEEEeCCCcEEEEEecCCC-EEEEEEecCCCCceEEEEECCCC-----
Confidence            876655556677889999999999998  5689999999999999987642 22334567899999999999987     


Q ss_pred             ecccccCCCceeEEeecCCcEEEEEEeCCce-----------eeeeeecccc-CCcceEEEEecCCCCCCCcEEEEEeCC
Q 036510          167 VGSGFLDPVQKLCSGGCDNTVKVWKLYNGIW-----------KMDCFPALQM-HTDWVRDVAWAPNLGLPKSTIASASED  234 (288)
Q Consensus       167 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----------~~~~~~~~~~-h~~~V~~v~~sp~~~~~~~~l~s~s~D  234 (288)
                               ++|++++.|++|+|||......           ..+++..+.+ |...|.+++|+|+.    .+|++++.|
T Consensus       207 ---------~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~----~~l~s~~~d  273 (345)
T 3fm0_A          207 ---------QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT----GALATACGD  273 (345)
T ss_dssp             ---------SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTT----CCEEEEETT
T ss_pred             ---------CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCC----CEEEEEeCC
Confidence                     7899999999999999854211           1123344444 88899999999984    579999999


Q ss_pred             CcEEEEEeecCCCccc------ceEeeccccCeEEEEeecCC-CEEEEEeCCCcEEEeEcC
Q 036510          235 GKVIIWTVAREGDQWE------GKVLHDFKTPVYRVSWSLTG-NILAVADGNNNVTLWEEA  288 (288)
Q Consensus       235 ~~i~iw~~~~~~~~~~------~~~~~~~~~~i~~~~~spdg-~~l~s~~~d~~v~~w~~~  288 (288)
                      +.|++|+.........      ......|...|++++|+|++ .+||+|+.|++|+||+.+
T Consensus       274 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~  334 (345)
T 3fm0_A          274 DAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ  334 (345)
T ss_dssp             SCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEEC
T ss_pred             CeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEec
Confidence            9999999875422111      11123567899999999998 499999999999999953

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.4e-42  Score=298.72  Aligned_cols=247  Identities=20%  Similarity=0.342  Sum_probs=210.5

Q ss_pred             cccccccceEEEEEcCC----CCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcE
Q 036510            6 IETGHEDTVHDVAMDYY----GKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTV   81 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~----g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v   81 (288)
                      .+.+|++.|++++|+|+    +++|+||+.|++|+||++..+.......+.+|...|.+++|+++  +.++++++.|++|
T Consensus        27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~--~~~l~s~s~D~~i  104 (321)
T 3ow8_A           27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHT--LPIAASSSLDAHI  104 (321)
T ss_dssp             ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSS--SSEEEEEETTSEE
T ss_pred             ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCC--CCEEEEEeCCCcE
Confidence            45699999999999874    67999999999999999875544456678999999999999865  7899999999999


Q ss_pred             EEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCC
Q 036510           82 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPST  161 (288)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~  161 (288)
                      ++||+.++.   ....+..|...+.+++|+|+  +.++++|+.|+.|++|+++.+..   ......|...+.++.|+|++
T Consensus       105 ~lWd~~~~~---~~~~~~~~~~~~~~~~~spd--g~~l~~g~~dg~v~i~~~~~~~~---~~~~~~~~~~v~~~~~spdg  176 (321)
T 3ow8_A          105 RLWDLENGK---QIKSIDAGPVDAWTLAFSPD--SQYLATGTHVGKVNIFGVESGKK---EYSLDTRGKFILSIAYSPDG  176 (321)
T ss_dssp             EEEETTTTE---EEEEEECCTTCCCCEEECTT--SSEEEEECTTSEEEEEETTTCSE---EEEEECSSSCEEEEEECTTS
T ss_pred             EEEECCCCC---EEEEEeCCCccEEEEEECCC--CCEEEEEcCCCcEEEEEcCCCce---eEEecCCCceEEEEEECCCC
Confidence            999998764   44567778889999999998  67899999999999999987542   23345677889999999987


Q ss_pred             CCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEE
Q 036510          162 APGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT  241 (288)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~  241 (288)
                                    ++|++|+.|+.|++||++++    +++..+.+|...|.+++|+|++    .+|++|+.|++|++||
T Consensus       177 --------------~~lasg~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~spd~----~~l~s~s~dg~i~iwd  234 (321)
T 3ow8_A          177 --------------KYLASGAIDGIINIFDIATG----KLLHTLEGHAMPIRSLTFSPDS----QLLVTASDDGYIKIYD  234 (321)
T ss_dssp             --------------SEEEEEETTSCEEEEETTTT----EEEEEECCCSSCCCEEEECTTS----CEEEEECTTSCEEEEE
T ss_pred             --------------CEEEEEcCCCeEEEEECCCC----cEEEEEcccCCceeEEEEcCCC----CEEEEEcCCCeEEEEE
Confidence                          78999999999999999876    4566788999999999999984    6899999999999999


Q ss_pred             eecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          242 VAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ++...   ....+.+|..+|.+++|+|+|++|++|+.|++|+|||+
T Consensus       235 ~~~~~---~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~  277 (321)
T 3ow8_A          235 VQHAN---LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV  277 (321)
T ss_dssp             TTTCC---EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             CCCcc---eeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeC
Confidence            87532   23455678889999999999999999999999999995

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.4e-42  Score=306.83  Aligned_cols=251  Identities=23%  Similarity=0.356  Sum_probs=215.2

Q ss_pred             CccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510            4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVII   83 (288)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i   83 (288)
                      ...+.+|.++|++++|+|++++|++|+.|++|++||+..  ++...++.+|...|++++|+++  +.+|++|+.|++|++
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~--~~~~~~l~~h~~~V~~v~~~~~--~~~l~sgs~D~~i~i  176 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET--GDFERTLKGHTDSVQDISFDHS--GKLLASCSADMTIKL  176 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT--CCCCEEECCCSSCEEEEEECTT--SSEEEEEETTSCCCE
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CcEEEEEeccCCcEEEEEEcCC--CCEEEEEeCCCeEEE
Confidence            345669999999999999999999999999999999854  3567889999999999999864  889999999999999


Q ss_pred             eecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCC
Q 036510           84 WKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAP  163 (288)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~  163 (288)
                      ||+.+..   ....+.+|...|.+++|+|+  +.++++|+.|++|++||++.+..   .....+|...|.++.|+|++  
T Consensus       177 wd~~~~~---~~~~~~~h~~~V~~v~~~p~--~~~l~s~s~D~~i~~wd~~~~~~---~~~~~~h~~~v~~~~~~~~g--  246 (410)
T 1vyh_C          177 WDFQGFE---CIRTMHGHDHNVSSVSIMPN--GDHIVSASRDKTIKMWEVQTGYC---VKTFTGHREWVRMVRPNQDG--  246 (410)
T ss_dssp             EETTSSC---EEECCCCCSSCEEEEEECSS--SSEEEEEETTSEEEEEETTTCCE---EEEEECCSSCEEEEEECTTS--
T ss_pred             EeCCCCc---eeEEEcCCCCCEEEEEEeCC--CCEEEEEeCCCeEEEEECCCCcE---EEEEeCCCccEEEEEECCCC--
Confidence            9997654   45667889999999999998  66899999999999999987643   34456899999999999987  


Q ss_pred             CceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCC----------------CCcE
Q 036510          164 GALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGL----------------PKST  227 (288)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~----------------~~~~  227 (288)
                                  .+|++|+.|++|++||+.++    ++...+.+|...|.++.|+|+..+                .+.+
T Consensus       247 ------------~~l~s~s~D~~v~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  310 (410)
T 1vyh_C          247 ------------TLIASCSNDQTVRVWVVATK----ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPF  310 (410)
T ss_dssp             ------------SEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCE
T ss_pred             ------------CEEEEEcCCCeEEEEECCCC----ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCE
Confidence                        78999999999999999876    345567889999999999996311                1458


Q ss_pred             EEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          228 IASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       228 l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      |++|+.|++|++||++...   ....+.+|..+|.+++|+|+|++|++|+.|++|+|||.
T Consensus       311 l~sgs~D~~i~iwd~~~~~---~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~  367 (410)
T 1vyh_C          311 LLSGSRDKTIKMWDVSTGM---CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY  367 (410)
T ss_dssp             EEEEETTSEEEEEETTTTE---EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred             EEEEeCCCeEEEEECCCCc---eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            9999999999999987531   22445678889999999999999999999999999985

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.2e-42  Score=306.10  Aligned_cols=261  Identities=25%  Similarity=0.391  Sum_probs=216.6

Q ss_pred             ccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510            5 KIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW   84 (288)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw   84 (288)
                      ..+.+|.+.|.+++|+|+|++|++|+.|++|++||+..  .+++.++.+|...|.+++|+++  +.+|++++.|++|++|
T Consensus       144 ~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~--~~~~~~~~~h~~~V~~v~~~p~--~~~l~s~s~D~~i~~w  219 (410)
T 1vyh_C          144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG--FECIRTMHGHDHNVSSVSIMPN--GDHIVSASRDKTIKMW  219 (410)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS--SCEEECCCCCSSCEEEEEECSS--SSEEEEEETTSEEEEE
T ss_pred             EEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--CceeEEEcCCCCCEEEEEEeCC--CCEEEEEeCCCeEEEE
Confidence            35668999999999999999999999999999999854  4678889999999999999864  8899999999999999


Q ss_pred             ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510           85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG  164 (288)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~  164 (288)
                      |+.++.   ....+.+|...|.++.|+|+  +.++++|+.|++|++||++....   .....+|...|.++.|+|+....
T Consensus       220 d~~~~~---~~~~~~~h~~~v~~~~~~~~--g~~l~s~s~D~~v~vwd~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~  291 (410)
T 1vyh_C          220 EVQTGY---CVKTFTGHREWVRMVRPNQD--GTLIASCSNDQTVRVWVVATKEC---KAELREHRHVVECISWAPESSYS  291 (410)
T ss_dssp             ETTTCC---EEEEEECCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTCCE---EEEECCCSSCEEEEEECCSCGGG
T ss_pred             ECCCCc---EEEEEeCCCccEEEEEECCC--CCEEEEEcCCCeEEEEECCCCce---eeEecCCCceEEEEEEcCccccc
Confidence            998765   45668899999999999998  67899999999999999986532   23456788999999999975311


Q ss_pred             ceec------ccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEE
Q 036510          165 ALVG------SGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVI  238 (288)
Q Consensus       165 ~~~~------~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~  238 (288)
                      ....      .....++.+|++|+.|++|++||++++    +++..+.+|..+|.++.|+|++    .+|++|+.|++|+
T Consensus       292 ~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~----~~~~~~~~h~~~v~~v~~~~~g----~~l~s~s~D~~i~  363 (410)
T 1vyh_C          292 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG----MCLMTLVGHDNWVRGVLFHSGG----KFILSCADDKTLR  363 (410)
T ss_dssp             GGGGCCSCC-------CCEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEECSSS----SCEEEEETTTEEE
T ss_pred             chhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC----ceEEEEECCCCcEEEEEEcCCC----CEEEEEeCCCeEE
Confidence            1000      001123568999999999999999876    4566778999999999999974    6899999999999


Q ss_pred             EEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEcC
Q 036510          239 IWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA  288 (288)
Q Consensus       239 iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~~  288 (288)
                      +||+....   ....+..|...|++++|+|++++|++|+.|++|+||+.+
T Consensus       364 vwd~~~~~---~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          364 VWDYKNKR---CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EECCTTSC---CCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             EEECCCCc---eEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            99986532   234556788899999999999999999999999999863

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-41  Score=293.46  Aligned_cols=258  Identities=28%  Similarity=0.429  Sum_probs=199.0

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCC-----CceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510            9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNN-----TSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVII   83 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i   83 (288)
                      +|.+.|.+++|+|++++|++|+.|++|+||++...     ..+.+..+.+|...|++++|+++  +++|++|+.|++|++
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~--g~~las~s~D~~v~i  133 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND--GYYLATCSRDKSVWI  133 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTT--SCEEEEEETTSCEEE
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCC--CCEEEEEeCCCEEEE
Confidence            49999999999999999999999999999998431     23567788999999999999865  899999999999999


Q ss_pred             eecCCC-CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCC
Q 036510           84 WKEGNS-NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTA  162 (288)
Q Consensus        84 wd~~~~-~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~  162 (288)
                      ||+... ........+.+|...|.+++|+|+  +.++++|+.|++|++||.+.+. +.......+|...|.++.|+|+..
T Consensus       134 wd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~--~~~l~s~s~D~~i~iW~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~  210 (330)
T 2hes_X          134 WETDESGEEYECISVLQEHSQDVKHVIWHPS--EALLASSSYDDTVRIWKDYDDD-WECVAVLNGHEGTVWSSDFDKTEG  210 (330)
T ss_dssp             EECCTTCCCCEEEEEECCCSSCEEEEEECSS--SSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCSSS
T ss_pred             EeccCCCCCeEEEEEeccCCCceEEEEECCC--CCEEEEEcCCCeEEEEECCCCC-eeEEEEccCCCCcEEEEEecCCCC
Confidence            998533 333455677889999999999998  6789999999999999987542 233456678999999999999842


Q ss_pred             CCceecccccCCCceeEEeecCCcEEEEEEeCCc----eeeeeeecccc-CCcceEEEEecCCCCCCCcEEEEEeCCCcE
Q 036510          163 PGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGI----WKMDCFPALQM-HTDWVRDVAWAPNLGLPKSTIASASEDGKV  237 (288)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~-h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i  237 (288)
                                  ..+|++|+.|++|++||+..+.    ....+...+.+ |...|.+++|+|+     .+|++++.|++|
T Consensus       211 ------------~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~-----~~l~s~~~dg~v  273 (330)
T 2hes_X          211 ------------VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN-----GLIASVGADGVL  273 (330)
T ss_dssp             ------------SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTT-----SCEEEEETTSCE
T ss_pred             ------------eeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCC-----CEEEEEeCCCEE
Confidence                        1579999999999999997531    11123334444 8999999999975     479999999999


Q ss_pred             EEEEeecCCCcccceEeecccc-CeEEEEeec--CCCEEEEEeCCCcEEEeEcC
Q 036510          238 IIWTVAREGDQWEGKVLHDFKT-PVYRVSWSL--TGNILAVADGNNNVTLWEEA  288 (288)
Q Consensus       238 ~iw~~~~~~~~~~~~~~~~~~~-~i~~~~~sp--dg~~l~s~~~d~~v~~w~~~  288 (288)
                      ++|+...............|.. .|.+++|+|  ++++|++|+.|++|+||+++
T Consensus       274 ~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~  327 (330)
T 2hes_X          274 AVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE  327 (330)
T ss_dssp             EEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred             EEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence            9999864311111122245665 899999999  79999999999999999963

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=7.1e-42  Score=294.38  Aligned_cols=245  Identities=21%  Similarity=0.377  Sum_probs=213.8

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      .+.+|+..|.+++|+++++++++++.|++|++||+..  ++.+..+.+|...++.++|+++  +++|++++.|+.|++|+
T Consensus        75 ~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~--~~~~~~~~~~~~~~~~~~~spd--g~~l~~g~~dg~v~i~~  150 (321)
T 3ow8_A           75 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLEN--GKQIKSIDAGPVDAWTLAFSPD--SQYLATGTHVGKVNIFG  150 (321)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT--TEEEEEEECCTTCCCCEEECTT--SSEEEEECTTSEEEEEE
T ss_pred             eeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC--CCEEEEEeCCCccEEEEEECCC--CCEEEEEcCCCcEEEEE
Confidence            4679999999999999999999999999999999854  4678889999999999999865  89999999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      +..+.   ....+..|...|.+++|+|+  +.++++|+.|+.|++||++++.   .....++|...|.++.|+|++    
T Consensus       151 ~~~~~---~~~~~~~~~~~v~~~~~spd--g~~lasg~~dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~~spd~----  218 (321)
T 3ow8_A          151 VESGK---KEYSLDTRGKFILSIAYSPD--GKYLASGAIDGIINIFDIATGK---LLHTLEGHAMPIRSLTFSPDS----  218 (321)
T ss_dssp             TTTCS---EEEEEECSSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTTE---EEEEECCCSSCCCEEEECTTS----
T ss_pred             cCCCc---eeEEecCCCceEEEEEECCC--CCEEEEEcCCCeEEEEECCCCc---EEEEEcccCCceeEEEEcCCC----
Confidence            98765   34456778889999999998  6789999999999999998653   344567899999999999987    


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE  245 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~  245 (288)
                                .+|++++.|++|++||++.+    ++...+.+|...|.+++|+|++    .+|++|+.|++|++||+...
T Consensus       219 ----------~~l~s~s~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~sp~~----~~l~s~s~D~~v~iwd~~~~  280 (321)
T 3ow8_A          219 ----------QLLVTASDDGYIKIYDVQHA----NLAGTLSGHASWVLNVAFCPDD----THFVSSSSDKSVKVWDVGTR  280 (321)
T ss_dssp             ----------CEEEEECTTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTS----SEEEEEETTSCEEEEETTTT
T ss_pred             ----------CEEEEEcCCCeEEEEECCCc----ceeEEEcCCCCceEEEEECCCC----CEEEEEeCCCcEEEEeCCCC
Confidence                      78999999999999999875    3456778999999999999984    68999999999999998743


Q ss_pred             CCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          246 GDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       246 ~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      .   ....+.+|...|.+++|+|+|++|++++.|++|+|||.
T Consensus       281 ~---~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          281 T---CVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             E---EEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             E---EEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            1   23445677889999999999999999999999999995

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.6e-41  Score=295.95  Aligned_cols=250  Identities=18%  Similarity=0.258  Sum_probs=207.0

Q ss_pred             CccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCc--------------------------------------
Q 036510            4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTS--------------------------------------   45 (288)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~--------------------------------------   45 (288)
                      +..+.+|.+.|++++|+|++++|+|||.|++|++||......                                      
T Consensus        57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~  136 (354)
T 2pbi_B           57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLT  136 (354)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECC
T ss_pred             EEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEe
Confidence            345679999999999999999999999999999999642210                                      


Q ss_pred             --------eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCe
Q 036510           46 --------QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGL  117 (288)
Q Consensus        46 --------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~  117 (288)
                              .....+.+|...|.+++|+++  +..|++++.|++|++||+.++.   ....+.+|...|.+++|+|+..+.
T Consensus       137 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~t~s~D~~v~lwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~g~  211 (354)
T 2pbi_B          137 FDKNENMAAKKKSVAMHTNYLSACSFTNS--DMQILTASGDGTCALWDVESGQ---LLQSFHGHGADVLCLDLAPSETGN  211 (354)
T ss_dssp             CCTTCCSGGGCEEEEECSSCEEEEEECSS--SSEEEEEETTSEEEEEETTTCC---EEEEEECCSSCEEEEEECCCSSCC
T ss_pred             ccccccccccceeeeccCCcEEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCe---EEEEEcCCCCCeEEEEEEeCCCCC
Confidence                    113445678899999999864  7899999999999999998765   456788899999999999976678


Q ss_pred             EEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCce
Q 036510          118 CLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIW  197 (288)
Q Consensus       118 ~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  197 (288)
                      ++++|+.|++|++||++++..   .....+|...|.++.|+|++              .+|++++.|++|++||++.+. 
T Consensus       212 ~l~sgs~Dg~v~~wd~~~~~~---~~~~~~h~~~v~~v~~~p~~--------------~~l~s~s~D~~v~lwd~~~~~-  273 (354)
T 2pbi_B          212 TFVSGGCDKKAMVWDMRSGQC---VQAFETHESDVNSVRYYPSG--------------DAFASGSDDATCRLYDLRADR-  273 (354)
T ss_dssp             EEEEEETTSCEEEEETTTCCE---EEEECCCSSCEEEEEECTTS--------------SEEEEEETTSCEEEEETTTTE-
T ss_pred             EEEEEeCCCeEEEEECCCCcE---EEEecCCCCCeEEEEEeCCC--------------CEEEEEeCCCeEEEEECCCCc-
Confidence            899999999999999987642   34557899999999999987              789999999999999998752 


Q ss_pred             eeeeeecc--ccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEE
Q 036510          198 KMDCFPAL--QMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAV  275 (288)
Q Consensus       198 ~~~~~~~~--~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s  275 (288)
                         .+..+  ..+...+.+++|+|++    .+|++|+.|++|++||+....   ....+.+|.++|.+++|+|||++|++
T Consensus       274 ---~~~~~~~~~~~~~~~~~~~s~~g----~~l~~g~~d~~i~vwd~~~~~---~~~~l~~h~~~v~~l~~spdg~~l~s  343 (354)
T 2pbi_B          274 ---EVAIYSKESIIFGASSVDFSLSG----RLLFAGYNDYTINVWDVLKGS---RVSILFGHENRVSTLRVSPDGTAFCS  343 (354)
T ss_dssp             ---EEEEECCTTCCSCEEEEEECTTS----SEEEEEETTSCEEEEETTTCS---EEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred             ---EEEEEcCCCcccceeEEEEeCCC----CEEEEEECCCcEEEEECCCCc---eEEEEECCCCcEEEEEECCCCCEEEE
Confidence               22222  2344568999999984    789999999999999986432   22455678899999999999999999


Q ss_pred             EeCCCcEEEeE
Q 036510          276 ADGNNNVTLWE  286 (288)
Q Consensus       276 ~~~d~~v~~w~  286 (288)
                      |+.|++|+||+
T Consensus       344 gs~D~~v~vW~  354 (354)
T 2pbi_B          344 GSWDHTLRVWA  354 (354)
T ss_dssp             EETTSEEEEEC
T ss_pred             EcCCCCEEecC
Confidence            99999999996

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-41  Score=291.22  Aligned_cols=258  Identities=28%  Similarity=0.474  Sum_probs=203.4

Q ss_pred             ccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEE-ec-cccCeEEEEecCCCCCCEEEEeeCCCcEE
Q 036510            5 KIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKL-SG-HKGAVWEVAWAHPKFGSILASCSFDGTVI   82 (288)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~-~~-h~~~v~~~~~~~~~~~~~l~s~s~d~~v~   82 (288)
                      +.+.+|++.|.+++|+++  +|++|+.|++|++|++..+....+..+ .+ |...|++++|+++  +.+|++++.|++|+
T Consensus         8 ~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~--~~~las~s~D~~v~   83 (330)
T 2hes_X            8 KSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH--TSLLAAGSFDSTVS   83 (330)
T ss_dssp             EEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTT--SSEEEEEETTSCEE
T ss_pred             eeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCC--CCEEEEEeCCCcEE
Confidence            345699999999999986  999999999999999865433455556 44 9999999999864  89999999999999


Q ss_pred             EeecCCCC----ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCC-CCeeeEEeeccCCCCeeEEEe
Q 036510           83 IWKEGNSN----EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARAD-GGWDTSRIDQAHPVGVTSVSW  157 (288)
Q Consensus        83 iwd~~~~~----~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~v~~i~~  157 (288)
                      ||+.....    .......+.+|...|.+++|+|+  +.+|++|+.|++|++||++.. ..........+|...|.++.|
T Consensus        84 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~--g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~  161 (330)
T 2hes_X           84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND--GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW  161 (330)
T ss_dssp             EEEC-------CCCEEEEEEC----CEEEEEECTT--SCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEE
T ss_pred             EEEcccCcCccccceeEEEEcCCCCcEEEEEECCC--CCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEE
Confidence            99985321    22345567889999999999998  678999999999999999643 233344566789999999999


Q ss_pred             CCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcE
Q 036510          158 APSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKV  237 (288)
Q Consensus       158 ~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i  237 (288)
                      +|++              .+|++++.|++|++||+..+.  .+++..+.+|...|.+++|+|+..  +.+|++|+.|++|
T Consensus       162 ~p~~--------------~~l~s~s~D~~i~iW~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~--~~~l~s~s~D~~v  223 (330)
T 2hes_X          162 HPSE--------------ALLASSSYDDTVRIWKDYDDD--WECVAVLNGHEGTVWSSDFDKTEG--VFRLCSGSDDSTV  223 (330)
T ss_dssp             CSSS--------------SEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCSSS--SCEEEEEETTSCE
T ss_pred             CCCC--------------CEEEEEcCCCeEEEEECCCCC--eeEEEEccCCCCcEEEEEecCCCC--eeEEEEEeCCCeE
Confidence            9987              789999999999999998752  245667889999999999999731  3579999999999


Q ss_pred             EEEEeecCCCc-----ccceEeec-cccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          238 IIWTVAREGDQ-----WEGKVLHD-FKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       238 ~iw~~~~~~~~-----~~~~~~~~-~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ++|++......     .....+.. |..+|++++|+|++ +|++++.|++|+||+.
T Consensus       224 ~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~  278 (330)
T 2hes_X          224 RVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEE  278 (330)
T ss_dssp             EEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEE
T ss_pred             EEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEc
Confidence            99999753211     01112222 67899999999766 7899999999999984

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-41  Score=293.71  Aligned_cols=281  Identities=46%  Similarity=0.821  Sum_probs=221.9

Q ss_pred             CCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEE
Q 036510            3 PQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVI   82 (288)
Q Consensus         3 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~   82 (288)
                      +..++.+|++.|.+++|+|+|++|++|+.|++|++|++.....+.+..+.+|...|++++|+++.++.+|++++.|+.|+
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~   82 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   82 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence            45667899999999999999999999999999999999755667788899999999999998754589999999999999


Q ss_pred             EeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCC
Q 036510           83 IWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTA  162 (288)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~  162 (288)
                      +||+..+. +.....+..|...|.+++|+|+..+.++++++.|+.|++||++...... ......|...|.++.|+|...
T Consensus        83 iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~  160 (379)
T 3jrp_A           83 IWKEENGR-WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS-PIIIDAHAIGVNSASWAPATI  160 (379)
T ss_dssp             EEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCC-EEEEECCTTCEEEEEECCCC-
T ss_pred             EEEcCCCc-eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCcee-eEEecCCCCceEEEEEcCccc
Confidence            99997653 3344566789999999999997435689999999999999998764322 234567889999999999521


Q ss_pred             CCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEe
Q 036510          163 PGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV  242 (288)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~  242 (288)
                      .... ......++.+|++++.|+.|++||++.+.....+...+.+|...|.+++|+|+.. .+.+|++++.|+.|++||+
T Consensus       161 ~~~~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~~~~l~s~~~dg~i~iwd~  238 (379)
T 3jrp_A          161 EEDG-EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL-LRSYLASVSQDRTCIIWTQ  238 (379)
T ss_dssp             ----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS-SSEEEEEEETTSCEEEEEE
T ss_pred             cccc-cccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC-CCCeEEEEeCCCEEEEEeC
Confidence            0000 0000112378999999999999999876544455667789999999999999720 0378999999999999999


Q ss_pred             ecCCCcccceEe--eccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          243 AREGDQWEGKVL--HDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       243 ~~~~~~~~~~~~--~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ............  ..+...|.+++|+|+|++|++++.|+.|+||++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~  285 (379)
T 3jrp_A          239 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  285 (379)
T ss_dssp             SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred             CCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence            864322222222  236678999999999999999999999999985

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.5e-41  Score=292.05  Aligned_cols=249  Identities=18%  Similarity=0.298  Sum_probs=209.6

Q ss_pred             CccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510            4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVII   83 (288)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i   83 (288)
                      +..+.+|.+.|++++|+|+|++|++|+.|++|++||...  ...+..+..|...|.+++|+++  +.+|++++.|+.+++
T Consensus        48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~--~~~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~d~~v~i  123 (340)
T 1got_B           48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYT--TNKVHAIPLRSSWVMTCAYAPS--GNYVACGGLDNICSI  123 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT--CCEEEEEECSSSCEEEEEECTT--SSEEEEEETTCEEEE
T ss_pred             heeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC--CCcceEeecCCccEEEEEECCC--CCEEEEEeCCCeEEE
Confidence            345779999999999999999999999999999999854  3567888999999999999864  899999999999999


Q ss_pred             eecCCCC-ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCC
Q 036510           84 WKEGNSN-EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTA  162 (288)
Q Consensus        84 wd~~~~~-~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~  162 (288)
                      |++.... .......+.+|...|.++.|+|+  + .+++++.|++|++||++++.   ......+|...|.++.|+|++ 
T Consensus       124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~-~l~s~s~d~~i~~wd~~~~~---~~~~~~~h~~~v~~~~~~~~~-  196 (340)
T 1got_B          124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDD--N-QIVTSSGDTTCALWDIETGQ---QTTTFTGHTGDVMSLSLAPDT-  196 (340)
T ss_dssp             EETTTCSBSCEEEEEEECCSSCEEEEEEEET--T-EEEEEETTSCEEEEETTTTE---EEEEECCCSSCEEEEEECTTS-
T ss_pred             EECccCCCcceeEEEecCCCccEEEEEECCC--C-cEEEEECCCcEEEEECCCCc---EEEEEcCCCCceEEEEECCCC-
Confidence            9987643 22344567889999999999986  3 37899999999999998653   334557899999999999987 


Q ss_pred             CCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEe
Q 036510          163 PGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV  242 (288)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~  242 (288)
                                   .++++|+.|++|++||++++    ++...+.+|...|.+++|+|++    .+|++|+.|++|++||+
T Consensus       197 -------------~~l~sg~~d~~v~~wd~~~~----~~~~~~~~h~~~v~~v~~~p~~----~~l~s~s~d~~v~iwd~  255 (340)
T 1got_B          197 -------------RLFVSGACDASAKLWDVREG----MCRQTFTGHESDINAICFFPNG----NAFATGSDDATCRLFDL  255 (340)
T ss_dssp             -------------SEEEEEETTSCEEEEETTTC----SEEEEECCCSSCEEEEEECTTS----SEEEEEETTSCEEEEET
T ss_pred             -------------CEEEEEeCCCcEEEEECCCC----eeEEEEcCCcCCEEEEEEcCCC----CEEEEEcCCCcEEEEEC
Confidence                         78999999999999999876    3556778999999999999984    78999999999999998


Q ss_pred             ecCCCcccceEee--ccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          243 AREGDQWEGKVLH--DFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       243 ~~~~~~~~~~~~~--~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      +....   ...+.  .+...|.+++|+|+|++|++|+.|++|+|||.
T Consensus       256 ~~~~~---~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~  299 (340)
T 1got_B          256 RADQE---LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA  299 (340)
T ss_dssp             TTTEE---EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CCCcE---EEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEc
Confidence            75321   11111  22347999999999999999999999999995

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.2e-41  Score=290.89  Aligned_cols=255  Identities=23%  Similarity=0.338  Sum_probs=205.7

Q ss_pred             cccccccceEEEEEcCCC-CEEEEeeCCCcEEEEEeCCCC---ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcE
Q 036510            6 IETGHEDTVHDVAMDYYG-KRLATASSDYSIKIIGVGNNT---SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTV   81 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~lwd~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v   81 (288)
                      .+.||++.|.+++|+|++ ++|+||+.|++|++|++....   +..+..+.+|...|.+++|+++  +.+|++++.|++|
T Consensus        12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~d--g~~l~s~s~D~~v   89 (319)
T 3frx_A           12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD--GAYALSASWDKTL   89 (319)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTT--SSEEEEEETTSEE
T ss_pred             EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCC--CCEEEEEeCCCEE
Confidence            467999999999999965 899999999999999985322   3457789999999999999864  8999999999999


Q ss_pred             EEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCC
Q 036510           82 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPST  161 (288)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~  161 (288)
                      ++||+.++.   ....+.+|...|.+++|+|+  +.++++|+.|++|++||++..    ......+|...|.++.|.|..
T Consensus        90 ~~wd~~~~~---~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~D~~i~vwd~~~~----~~~~~~~h~~~v~~~~~~~~~  160 (319)
T 3frx_A           90 RLWDVATGE---TYQRFVGHKSDVMSVDIDKK--ASMIISGSRDKTIKVWTIKGQ----CLATLLGHNDWVSQVRVVPNE  160 (319)
T ss_dssp             EEEETTTTE---EEEEEECCSSCEEEEEECTT--SCEEEEEETTSCEEEEETTSC----EEEEECCCSSCEEEEEECCC-
T ss_pred             EEEECCCCC---eeEEEccCCCcEEEEEEcCC--CCEEEEEeCCCeEEEEECCCC----eEEEEeccCCcEEEEEEccCC
Confidence            999998765   45667899999999999997  678999999999999998632    234456899999999999875


Q ss_pred             CCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEE
Q 036510          162 APGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT  241 (288)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~  241 (288)
                      ..        ..+...+++++.|++|++||+++.    +....+.+|...|.+++|+|++    .+|++|+.|++|++||
T Consensus       161 ~~--------~~~~~~l~s~~~d~~i~~wd~~~~----~~~~~~~~h~~~v~~~~~sp~g----~~l~s~~~dg~i~iwd  224 (319)
T 3frx_A          161 KA--------DDDSVTIISAGNDKMVKAWNLNQF----QIEADFIGHNSNINTLTASPDG----TLIASAGKDGEIMLWN  224 (319)
T ss_dssp             -------------CCEEEEEETTSCEEEEETTTT----EEEEEECCCCSCEEEEEECTTS----SEEEEEETTCEEEEEE
T ss_pred             CC--------CCCccEEEEEeCCCEEEEEECCcc----hhheeecCCCCcEEEEEEcCCC----CEEEEEeCCCeEEEEE
Confidence            21        112357999999999999999775    3455678999999999999984    7899999999999999


Q ss_pred             eecCCCccc----------------------------------ceEe-----------eccccCeEEEEeecCCCEEEEE
Q 036510          242 VAREGDQWE----------------------------------GKVL-----------HDFKTPVYRVSWSLTGNILAVA  276 (288)
Q Consensus       242 ~~~~~~~~~----------------------------------~~~~-----------~~~~~~i~~~~~spdg~~l~s~  276 (288)
                      +...+....                                  ...+           ..+...+.+++|+|||++|++|
T Consensus       225 ~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg  304 (319)
T 3frx_A          225 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAG  304 (319)
T ss_dssp             TTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEE
T ss_pred             CCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEe
Confidence            865320000                                  0000           0123457899999999999999


Q ss_pred             eCCCcEEEeEc
Q 036510          277 DGNNNVTLWEE  287 (288)
Q Consensus       277 ~~d~~v~~w~~  287 (288)
                      +.|++|+|||+
T Consensus       305 ~~Dg~i~vWd~  315 (319)
T 3frx_A          305 YTDNVIRVWQV  315 (319)
T ss_dssp             ETTSCEEEEEE
T ss_pred             ecCceEEEEEE
Confidence            99999999995

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.4e-41  Score=295.22  Aligned_cols=248  Identities=19%  Similarity=0.168  Sum_probs=199.2

Q ss_pred             cccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCce--eeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            8 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQ--HLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         8 ~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      .+|+..|.+++|+|+++ +++++.|++|+|||+..+...  ......+|...|++++|+++  +++|++++.|++|++||
T Consensus        91 ~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spd--g~~l~sgs~dg~v~iwd  167 (357)
T 4g56_B           91 VQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSD--GTQAVSGGKDFSVKVWD  167 (357)
T ss_dssp             EECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSS--SSEEEEEETTSCEEEEE
T ss_pred             CCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCC--CCEEEEEeCCCeEEEEE
Confidence            36899999999999985 567889999999998643221  12345689999999999865  89999999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      +.++.   ....+.+|...|++++|+|++ ..++++++.|++|++||++++..... .....|...+.++.|+|+..   
T Consensus       168 ~~~~~---~~~~~~~h~~~v~~v~~s~~~-~~~~~s~~~dg~v~~wd~~~~~~~~~-~~~~~~~~~v~~v~~sp~~~---  239 (357)
T 4g56_B          168 LSQKA---VLKSYNAHSSEVNCVAACPGK-DTIFLSCGEDGRILLWDTRKPKPATR-IDFCASDTIPTSVTWHPEKD---  239 (357)
T ss_dssp             TTTTE---EEEEECCCSSCEEEEEECTTC-SSCEEEEETTSCEEECCTTSSSCBCB-CCCTTCCSCEEEEEECTTST---
T ss_pred             CCCCc---EEEEEcCCCCCEEEEEEccCC-CceeeeeccCCceEEEECCCCceeee-eeeccccccccchhhhhccc---
Confidence            97754   456678899999999999985 34688999999999999987643221 22345677899999999863   


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE  245 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~  245 (288)
                                .+|++|+.|+.|++||++++    +++..+.+|...|.+++|+|+.   ..+||+|+.|++|+|||++..
T Consensus       240 ----------~~la~g~~d~~i~~wd~~~~----~~~~~~~~~~~~v~~l~~sp~~---~~~lasgs~D~~i~iwd~~~~  302 (357)
T 4g56_B          240 ----------DTFACGDETGNVSLVNIKNP----DSAQTSAVHSQNITGLAYSYHS---SPFLASISEDCTVAVLDADFS  302 (357)
T ss_dssp             ----------TEEEEEESSSCEEEEESSCG----GGCEEECCCSSCEEEEEECSSS---SCCEEEEETTSCEEEECTTSC
T ss_pred             ----------ceEEEeecccceeEEECCCC----cEeEEEeccceeEEEEEEcCCC---CCEEEEEeCCCEEEEEECCCC
Confidence                      67999999999999999876    3556778999999999999985   357999999999999998643


Q ss_pred             CCcccceEeeccccCeEEEEeec-CCCEEEEEeCCCcEEEeEc
Q 036510          246 GDQWEGKVLHDFKTPVYRVSWSL-TGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       246 ~~~~~~~~~~~~~~~i~~~~~sp-dg~~l~s~~~d~~v~~w~~  287 (288)
                      +    .....+|.+.|++++||| |+++|++|+.|++|++|++
T Consensus       303 ~----~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~  341 (357)
T 4g56_B          303 E----VFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHL  341 (357)
T ss_dssp             E----EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred             c----EeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEEC
Confidence            1    122346788999999999 8999999999999999995

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.6e-40  Score=287.31  Aligned_cols=251  Identities=16%  Similarity=0.151  Sum_probs=195.9

Q ss_pred             ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeC---------CCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeC
Q 036510            7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVG---------NNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSF   77 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~---------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~   77 (288)
                      ...|+..|.+++|+|||++|++++ |.++++||..         ............|...|.+++|+++   ..|++|+.
T Consensus        26 ~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d---~~l~~~s~  101 (344)
T 4gqb_B           26 PACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE---RGILVASD  101 (344)
T ss_dssp             CSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT---TEEEEEET
T ss_pred             cccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC---CeEEEEEC
Confidence            346888999999999999999888 7788888631         1111122233456788999999864   57899999


Q ss_pred             CCcEEEeecCCCCceE-EeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEE
Q 036510           78 DGTVIIWKEGNSNEWI-KDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVS  156 (288)
Q Consensus        78 d~~v~iwd~~~~~~~~-~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~  156 (288)
                      ||+|+|||+.++.... ....+.+|.+.|++++|+|+  +.+|++|+.|++|++||++++.   ......+|...|.++.
T Consensus       102 dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd--g~~l~sgs~d~~i~iwd~~~~~---~~~~~~~h~~~V~~~~  176 (344)
T 4gqb_B          102 SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSS--GTQAVSGSKDICIKVWDLAQQV---VLSSYRAHAAQVTCVA  176 (344)
T ss_dssp             TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTTE---EEEEECCCSSCEEEEE
T ss_pred             CCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCC--CCEEEEEeCCCeEEEEECCCCc---EEEEEcCcCCceEEEE
Confidence            9999999998765432 22345689999999999998  6789999999999999998653   3455678999999999


Q ss_pred             eCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCc
Q 036510          157 WAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGK  236 (288)
Q Consensus       157 ~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~  236 (288)
                      |+|++.             .+|++++.|++|++||++++......  ....|...+.+++|+|+.   +.+||+|+.|++
T Consensus       177 ~~~~~~-------------~~l~s~s~D~~v~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~p~~---~~~l~sg~~dg~  238 (344)
T 4gqb_B          177 ASPHKD-------------SVFLSCSEDNRILLWDTRCPKPASQI--GCSAPGYLPTSLAWHPQQ---SEVFVFGDENGT  238 (344)
T ss_dssp             ECSSCT-------------TEEEEEETTSCEEEEETTSSSCEEEC--C----CCCEEEEEECSSC---TTEEEEEETTSE
T ss_pred             ecCCCC-------------Cceeeeccccccccccccccceeeee--ecceeeccceeeeecCCC---CcceEEeccCCc
Confidence            999873             57899999999999999876322111  124556679999999974   468999999999


Q ss_pred             EEEEEeecCCCcccceEeeccccCeEEEEeecCC-CEEEEEeCCCcEEEeEc
Q 036510          237 VIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTG-NILAVADGNNNVTLWEE  287 (288)
Q Consensus       237 i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg-~~l~s~~~d~~v~~w~~  287 (288)
                      |++||++..+   ....+..|...|++++|+|+| ++|++|+.|++|+|||.
T Consensus       239 v~~wd~~~~~---~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~  287 (344)
T 4gqb_B          239 VSLVDTKSTS---CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDS  287 (344)
T ss_dssp             EEEEESCC-----CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred             EEEEECCCCc---EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEEC
Confidence            9999987542   234567788999999999998 57999999999999995

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1e-39  Score=282.75  Aligned_cols=244  Identities=16%  Similarity=0.235  Sum_probs=205.9

Q ss_pred             ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCC--ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510            7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNT--SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW   84 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw   84 (288)
                      +..|...|.+++|+|+|++|++|+.|+.+++|++....  ......+.+|...|.++.|+++   ..+++++.|++|++|
T Consensus        93 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~l~s~s~d~~i~~w  169 (340)
T 1got_B           93 IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCALW  169 (340)
T ss_dssp             EECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEET---TEEEEEETTSCEEEE
T ss_pred             eecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCC---CcEEEEECCCcEEEE
Confidence            45788999999999999999999999999999986432  2456778899999999999753   469999999999999


Q ss_pred             ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510           85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG  164 (288)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~  164 (288)
                      |+.++.   ....+.+|...|.+++|+|+  +.++++|+.|++|++||++++..   .....+|...|.++.|+|++   
T Consensus       170 d~~~~~---~~~~~~~h~~~v~~~~~~~~--~~~l~sg~~d~~v~~wd~~~~~~---~~~~~~h~~~v~~v~~~p~~---  238 (340)
T 1got_B          170 DIETGQ---QTTTFTGHTGDVMSLSLAPD--TRLFVSGACDASAKLWDVREGMC---RQTFTGHESDINAICFFPNG---  238 (340)
T ss_dssp             ETTTTE---EEEEECCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTCSE---EEEECCCSSCEEEEEECTTS---
T ss_pred             ECCCCc---EEEEEcCCCCceEEEEECCC--CCEEEEEeCCCcEEEEECCCCee---EEEEcCCcCCEEEEEEcCCC---
Confidence            997754   45667889999999999997  67899999999999999987532   34557899999999999987   


Q ss_pred             ceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecc--ccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEe
Q 036510          165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPAL--QMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV  242 (288)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~  242 (288)
                                 ++|++|+.|++|++||++.+.    .+..+  ..+...|.+++|+|++    .+|++|+.|+.|++||+
T Consensus       239 -----------~~l~s~s~d~~v~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~~g----~~l~~g~~d~~i~vwd~  299 (340)
T 1got_B          239 -----------NAFATGSDDATCRLFDLRADQ----ELMTYSHDNIICGITSVSFSKSG----RLLLAGYDDFNCNVWDA  299 (340)
T ss_dssp             -----------SEEEEEETTSCEEEEETTTTE----EEEEECCTTCCSCEEEEEECTTS----SEEEEEETTSEEEEEET
T ss_pred             -----------CEEEEEcCCCcEEEEECCCCc----EEEEEccCCcccceEEEEECCCC----CEEEEECCCCeEEEEEc
Confidence                       789999999999999998763    22222  3344579999999984    78999999999999998


Q ss_pred             ecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          243 AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      ....   ....+.+|.++|.+++|+|||++|++|+.|++|+|||
T Consensus       300 ~~~~---~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          300 LKAD---RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TTCC---EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ccCc---EeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            6532   2345678889999999999999999999999999997

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=9.5e-41  Score=293.61  Aligned_cols=252  Identities=18%  Similarity=0.248  Sum_probs=190.1

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCC-------------------
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHP-------------------   66 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~-------------------   66 (288)
                      .+.||++.|++++|+|+|++|+||+.|++|++||...  .+....+.+|...|.+++|+++                   
T Consensus        61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~--~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~  138 (380)
T 3iz6_a           61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALT--SQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLS  138 (380)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTT--TEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECC
T ss_pred             cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECC
Confidence            4679999999999999999999999999999999743  3455666666666666666543                   


Q ss_pred             -----------------------------CCCCEEEEeeCCCcEEEeecCCCCceEEeEEe-----ecCCCceeEEEecc
Q 036510           67 -----------------------------KFGSILASCSFDGTVIIWKEGNSNEWIKDHVF-----EDHKSSVNSIDWAP  112 (288)
Q Consensus        67 -----------------------------~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~-----~~h~~~v~~l~~~p  112 (288)
                                                   ..+..|++|+.|++|++||+.++..   ...+     .+|...|.+++|+|
T Consensus       139 ~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~---~~~~~~~~~~~h~~~v~~~~~~~  215 (380)
T 3iz6_a          139 SQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR---ISIFGSEFPSGHTADVLSLSINS  215 (380)
T ss_dssp             CCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE---EEEECCCSSSSCCSCEEEEEECS
T ss_pred             CCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE---EEEeecccCCCCccCeEEEEeec
Confidence                                         0123455555555555555544331   2222     46888999999987


Q ss_pred             CCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEE
Q 036510          113 HELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKL  192 (288)
Q Consensus       113 ~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  192 (288)
                      .+ +.++++|+.|++|++||++....  ......+|...|.++.|+|++              .+|++|+.|++|++||+
T Consensus       216 ~~-~~~l~sgs~D~~v~~wd~~~~~~--~~~~~~~h~~~v~~v~~~p~~--------------~~l~s~s~D~~i~lwd~  278 (380)
T 3iz6_a          216 LN-ANMFISGSCDTTVRLWDLRITSR--AVRTYHGHEGDINSVKFFPDG--------------QRFGTGSDDGTCRLFDM  278 (380)
T ss_dssp             SS-CCEEEEEETTSCEEEEETTTTCC--CCEEECCCSSCCCEEEECTTS--------------SEEEEECSSSCEEEEET
T ss_pred             CC-CCEEEEEECCCeEEEEECCCCCc--ceEEECCcCCCeEEEEEecCC--------------CeEEEEcCCCeEEEEEC
Confidence            43 66899999999999999985432  234557899999999999987              78999999999999999


Q ss_pred             eCCceeeeeeeccc-------cCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccc-eEeeccccCeEEE
Q 036510          193 YNGIWKMDCFPALQ-------MHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEG-KVLHDFKTPVYRV  264 (288)
Q Consensus       193 ~~~~~~~~~~~~~~-------~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~-~~~~~~~~~i~~~  264 (288)
                      +++.    ++..+.       .+...|.+++|+|++    .+|++|+.|+.|++||+......... .....|.+.|.++
T Consensus       279 ~~~~----~~~~~~~~~~~~~~~~~~v~~~~~s~~g----~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l  350 (380)
T 3iz6_a          279 RTGH----QLQVYNREPDRNDNELPIVTSVAFSISG----RLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCL  350 (380)
T ss_dssp             TTTE----EEEEECCCCSSSCCSSCSCSEEEECSSS----SEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEE
T ss_pred             CCCc----EEEEecccccccccccCceEEEEECCCC----CEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEE
Confidence            8863    222222       233458999999984    78999999999999998643211000 1114577899999


Q ss_pred             EeecCCCEEEEEeCCCcEEEeEc
Q 036510          265 SWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       265 ~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      +|+|||++|++|+.|++|+||++
T Consensus       351 ~~s~dg~~l~sgs~D~~i~iW~~  373 (380)
T 3iz6_a          351 GLSSDGSALCTGSWDKNLKIWAF  373 (380)
T ss_dssp             EECSSSSEEEEECTTSCEEEEEC
T ss_pred             EECCCCCEEEEeeCCCCEEEEec
Confidence            99999999999999999999995

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.2e-39  Score=282.51  Aligned_cols=258  Identities=20%  Similarity=0.291  Sum_probs=203.8

Q ss_pred             ccccccccceEEEEE-----cC-CCCEEEEeeCCCcEEEEEeCCCC-----ceeeEEEeccccCeEEEEecCCCCCCEEE
Q 036510            5 KIETGHEDTVHDVAM-----DY-YGKRLATASSDYSIKIIGVGNNT-----SQHLAKLSGHKGAVWEVAWAHPKFGSILA   73 (288)
Q Consensus         5 ~~~~~h~~~v~~~~~-----s~-~g~~l~s~~~d~~i~lwd~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~   73 (288)
                      ..+.||++.|++++|     ++ ++++|+||+.|++|++||+....     +.....+.+|...|.+++|+++  +.+|+
T Consensus        15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~--~~~l~   92 (343)
T 2xzm_R           15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE--NCFAI   92 (343)
T ss_dssp             EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS--TTEEE
T ss_pred             eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC--CCEEE
Confidence            356799999999999     76 89999999999999999986431     3456788999999999999864  88999


Q ss_pred             EeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCee
Q 036510           74 SCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVT  153 (288)
Q Consensus        74 s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~  153 (288)
                      +++.|++|++||++++.   ....+.+|...|.+++|+|+  +.++++|+.|++|++||++.. ..........|...|.
T Consensus        93 s~s~D~~v~lwd~~~~~---~~~~~~~h~~~v~~v~~sp~--~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~  166 (343)
T 2xzm_R           93 SSSWDKTLRLWDLRTGT---TYKRFVGHQSEVYSVAFSPD--NRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVS  166 (343)
T ss_dssp             EEETTSEEEEEETTSSC---EEEEEECCCSCEEEEEECSS--TTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEE
T ss_pred             EEcCCCcEEEEECCCCc---EEEEEcCCCCcEEEEEECCC--CCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceee
Confidence            99999999999998765   44567889999999999998  668999999999999998732 1111111236888899


Q ss_pred             EEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeC
Q 036510          154 SVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE  233 (288)
Q Consensus       154 ~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~  233 (288)
                      ++.|+|+.....    .......+|++++.|++|++||. ..    +....+.+|...|.+++|+|++    ++|++|+.
T Consensus       167 ~~~~~~~~~~~~----~~~~~~~~l~s~~~d~~i~iwd~-~~----~~~~~~~~h~~~v~~~~~s~~g----~~l~sgs~  233 (343)
T 2xzm_R          167 CVRYSPIMKSAN----KVQPFAPYFASVGWDGRLKVWNT-NF----QIRYTFKAHESNVNHLSISPNG----KYIATGGK  233 (343)
T ss_dssp             EEEECCCCCSCS----CCCSSCCEEEEEETTSEEEEEET-TT----EEEEEEECCSSCEEEEEECTTS----SEEEEEET
T ss_pred             eeeecccccccc----ccCCCCCEEEEEcCCCEEEEEcC-CC----ceeEEEcCccccceEEEECCCC----CEEEEEcC
Confidence            999999863211    11122367999999999999993 22    3455678899999999999984    78999999


Q ss_pred             CCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          234 DGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       234 D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      |++|++||+......  ... ..+...|.+++|+|++++++++ .|+.|++|++
T Consensus       234 dg~v~iwd~~~~~~~--~~~-~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~  283 (343)
T 2xzm_R          234 DKKLLIWDILNLTYP--QRE-FDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNL  283 (343)
T ss_dssp             TCEEEEEESSCCSSC--SEE-EECSSCEEEEEECSSSCEEEEE-ESSCEEEEES
T ss_pred             CCeEEEEECCCCccc--cee-ecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEe
Confidence            999999998533211  112 2234579999999999988755 6889999985

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.4e-40  Score=307.17  Aligned_cols=250  Identities=22%  Similarity=0.329  Sum_probs=205.7

Q ss_pred             ccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC----Cc
Q 036510            5 KIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD----GT   80 (288)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d----~~   80 (288)
                      ..+.+|++.|++++|+|+|++||||+.|++|+|||+..........+.+|...|.+++|+++  +++|++++.+    +.
T Consensus        53 ~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~d--g~~l~~~~~~~~~~~~  130 (611)
T 1nr0_A           53 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE--SKRIAAVGEGRERFGH  130 (611)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTT--SCEEEEEECCSSCSEE
T ss_pred             eEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCC--CCEEEEEECCCCceeE
Confidence            35679999999999999999999999999999999854444456778999999999999875  8899988876    47


Q ss_pred             EEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCC
Q 036510           81 VIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPS  160 (288)
Q Consensus        81 v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~  160 (288)
                      |++||...     ....+.+|...|++++|+|++ ...+++|+.|++|++||.+..   .......+|...|.+++|+|+
T Consensus       131 v~~wd~~~-----~~~~l~gh~~~v~~v~f~p~~-~~~l~s~s~D~~v~lwd~~~~---~~~~~l~~H~~~V~~v~fspd  201 (611)
T 1nr0_A          131 VFLFDTGT-----SNGNLTGQARAMNSVDFKPSR-PFRIISGSDDNTVAIFEGPPF---KFKSTFGEHTKFVHSVRYNPD  201 (611)
T ss_dssp             EEETTTCC-----BCBCCCCCSSCEEEEEECSSS-SCEEEEEETTSCEEEEETTTB---EEEEEECCCSSCEEEEEECTT
T ss_pred             EEEeeCCC-----CcceecCCCCCceEEEECCCC-CeEEEEEeCCCeEEEEECCCC---eEeeeeccccCceEEEEECCC
Confidence            89998532     234577899999999999984 346999999999999997643   233456789999999999998


Q ss_pred             CCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccc-------cCCcceEEEEecCCCCCCCcEEEEEeC
Q 036510          161 TAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQ-------MHTDWVRDVAWAPNLGLPKSTIASASE  233 (288)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-------~h~~~V~~v~~sp~~~~~~~~l~s~s~  233 (288)
                      +              ++|++++.|++|++||+.++.    +...+.       +|.+.|.+++|+|++    ++|++++.
T Consensus       202 g--------------~~las~s~D~~i~lwd~~~g~----~~~~~~~~~~~~~~h~~~V~~v~~spdg----~~l~s~s~  259 (611)
T 1nr0_A          202 G--------------SLFASTGGDGTIVLYNGVDGT----KTGVFEDDSLKNVAHSGSVFGLTWSPDG----TKIASASA  259 (611)
T ss_dssp             S--------------SEEEEEETTSCEEEEETTTCC----EEEECBCTTSSSCSSSSCEEEEEECTTS----SEEEEEET
T ss_pred             C--------------CEEEEEECCCcEEEEECCCCc----EeeeeccccccccccCCCEEEEEECCCC----CEEEEEeC
Confidence            7              789999999999999987763    223332       799999999999984    78999999


Q ss_pred             CCcEEEEEeecCCCcc----------------------------------------cceEeeccccCeEEEEeecCCCEE
Q 036510          234 DGKVIIWTVAREGDQW----------------------------------------EGKVLHDFKTPVYRVSWSLTGNIL  273 (288)
Q Consensus       234 D~~i~iw~~~~~~~~~----------------------------------------~~~~~~~~~~~i~~~~~spdg~~l  273 (288)
                      |++|++||+...+...                                        ....+.+|...|++++|+|||++|
T Consensus       260 D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l  339 (611)
T 1nr0_A          260 DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTL  339 (611)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             CCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEE
Confidence            9999999986431100                                        011234677899999999999999


Q ss_pred             EEEeCCCcEEEeEc
Q 036510          274 AVADGNNNVTLWEE  287 (288)
Q Consensus       274 ~s~~~d~~v~~w~~  287 (288)
                      ++++.|++|++||+
T Consensus       340 ~s~s~D~~v~~Wd~  353 (611)
T 1nr0_A          340 FSADAEGHINSWDI  353 (611)
T ss_dssp             EEEETTSCEEEEET
T ss_pred             EEEeCCCcEEEEEC
Confidence            99999999999995

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.2e-39  Score=300.62  Aligned_cols=266  Identities=23%  Similarity=0.311  Sum_probs=210.2

Q ss_pred             cccccccceEEEEEcCCCC-EEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510            6 IETGHEDTVHDVAMDYYGK-RLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW   84 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~-~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw   84 (288)
                      .+.+|.+.|.+++|+|++. +|++|+.|++|++||..  ..+.+.++.+|...|++++|+++  +++|++++.|++|++|
T Consensus       142 ~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~--~~~~~~~l~~H~~~V~~v~fspd--g~~las~s~D~~i~lw  217 (611)
T 1nr0_A          142 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP--PFKFKSTFGEHTKFVHSVRYNPD--GSLFASTGGDGTIVLY  217 (611)
T ss_dssp             CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT--TBEEEEEECCCSSCEEEEEECTT--SSEEEEEETTSCEEEE
T ss_pred             eecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECC--CCeEeeeeccccCceEEEEECCC--CCEEEEEECCCcEEEE
Confidence            4569999999999999986 69999999999999974  45778889999999999999875  8999999999999999


Q ss_pred             ecCCCCceEEeEEee-------cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCee-----------------
Q 036510           85 KEGNSNEWIKDHVFE-------DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWD-----------------  140 (288)
Q Consensus        85 d~~~~~~~~~~~~~~-------~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~-----------------  140 (288)
                      |..++.   ....+.       +|.+.|.+++|+|+  +.++++++.|++|++||++++....                 
T Consensus       218 d~~~g~---~~~~~~~~~~~~~~h~~~V~~v~~spd--g~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~  292 (611)
T 1nr0_A          218 NGVDGT---KTGVFEDDSLKNVAHSGSVFGLTWSPD--GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW  292 (611)
T ss_dssp             ETTTCC---EEEECBCTTSSSCSSSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE
T ss_pred             ECCCCc---EeeeeccccccccccCCCEEEEEECCC--CCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE
Confidence            987765   233442       69999999999998  6789999999999999987542211                 


Q ss_pred             -----------------------eEEeeccCCCCeeEEEeCCCCCCCc-------e------------------------
Q 036510          141 -----------------------TSRIDQAHPVGVTSVSWAPSTAPGA-------L------------------------  166 (288)
Q Consensus       141 -----------------------~~~~~~~~~~~v~~i~~~p~~~~~~-------~------------------------  166 (288)
                                             ......+|...|.++.|+|++...+       +                        
T Consensus       293 ~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~  372 (611)
T 1nr0_A          293 TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG  372 (611)
T ss_dssp             CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEE
T ss_pred             cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEE
Confidence                                   1123457888899999998763100       0                        


Q ss_pred             -------------------------------------------------------------------------------e
Q 036510          167 -------------------------------------------------------------------------------V  167 (288)
Q Consensus       167 -------------------------------------------------------------------------------~  167 (288)
                                                                                                     .
T Consensus       373 ~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~  452 (611)
T 1nr0_A          373 IKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSS  452 (611)
T ss_dssp             EEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEE
T ss_pred             EEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCce
Confidence                                                                                           0


Q ss_pred             cccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCC
Q 036510          168 GSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGD  247 (288)
Q Consensus       168 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~  247 (288)
                      ...+.+++++|++|+.|++|++||+.++.  ...... .+|...|.+|+|+|++    ++|++++.|++|++|++.....
T Consensus       453 ~va~spdg~~lasgs~D~~v~lwd~~~~~--~~~~~~-~~h~~~v~~v~fspdg----~~las~s~d~~v~~w~~~~~~~  525 (611)
T 1nr0_A          453 CVALSNDKQFVAVGGQDSKVHVYKLSGAS--VSEVKT-IVHPAEITSVAFSNNG----AFLVATDQSRKVIPYSVANNFE  525 (611)
T ss_dssp             EEEECTTSCEEEEEETTSEEEEEEEETTE--EEEEEE-EECSSCEEEEEECTTS----SEEEEEETTSCEEEEEGGGTTE
T ss_pred             EEEEeCCCCEEEEeCCCCeEEEEEccCCc--eeeeec-cCCCCceEEEEECCCC----CEEEEEcCCCCEEEEEcCCCCc
Confidence            01233457789999999999999998752  122233 6799999999999984    7899999999999999875221


Q ss_pred             cccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          248 QWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       248 ~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      .........|...|++++|+|||++||+|+.|++|+||++
T Consensus       526 ~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~  565 (611)
T 1nr0_A          526 LAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM  565 (611)
T ss_dssp             ESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             eeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEEC
Confidence            1111112237789999999999999999999999999995

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1e-39  Score=284.85  Aligned_cols=252  Identities=17%  Similarity=0.205  Sum_probs=195.2

Q ss_pred             ccccccceEEEEEcCCCCEEEEeeC------CCcEEEEEeCCCC--ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC
Q 036510            7 ETGHEDTVHDVAMDYYGKRLATASS------DYSIKIIGVGNNT--SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD   78 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~~l~s~~~------d~~i~lwd~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d   78 (288)
                      ..+|++.|++++|+|||++||+||.      |+++++|+.....  ........+|...|.+++|+++  + .+++++.|
T Consensus        38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d--~-~~l~~s~d  114 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSE--K-GILVASDS  114 (357)
T ss_dssp             --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETT--T-EEEEEETT
T ss_pred             cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCC--C-CEEEEECC
Confidence            3479999999999999999999997      6788999864321  2234455679999999999864  4 56778999


Q ss_pred             CcEEEeecCCCCceE-EeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEe
Q 036510           79 GTVIIWKEGNSNEWI-KDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSW  157 (288)
Q Consensus        79 ~~v~iwd~~~~~~~~-~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~  157 (288)
                      ++|+|||+.++.... ......+|...|++++|+|+  +.++++|+.|++|++||++++.   .....++|...|.++.|
T Consensus       115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spd--g~~l~sgs~dg~v~iwd~~~~~---~~~~~~~h~~~v~~v~~  189 (357)
T 4g56_B          115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSD--GTQAVSGGKDFSVKVWDLSQKA---VLKSYNAHSSEVNCVAA  189 (357)
T ss_dssp             SCEEEC--------CCCCEEECCCSSCEEEEEECSS--SSEEEEEETTSCEEEEETTTTE---EEEEECCCSSCEEEEEE
T ss_pred             CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCC--CCEEEEEeCCCeEEEEECCCCc---EEEEEcCCCCCEEEEEE
Confidence            999999987654321 12234579999999999998  6789999999999999998653   34456789999999999


Q ss_pred             CCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcE
Q 036510          158 APSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKV  237 (288)
Q Consensus       158 ~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i  237 (288)
                      +|++.             .++++++.|++|++||++++...  ....+..|...|.+++|+|+.   +.+|++|+.|+.|
T Consensus       190 s~~~~-------------~~~~s~~~dg~v~~wd~~~~~~~--~~~~~~~~~~~v~~v~~sp~~---~~~la~g~~d~~i  251 (357)
T 4g56_B          190 CPGKD-------------TIFLSCGEDGRILLWDTRKPKPA--TRIDFCASDTIPTSVTWHPEK---DDTFACGDETGNV  251 (357)
T ss_dssp             CTTCS-------------SCEEEEETTSCEEECCTTSSSCB--CBCCCTTCCSCEEEEEECTTS---TTEEEEEESSSCE
T ss_pred             ccCCC-------------ceeeeeccCCceEEEECCCCcee--eeeeeccccccccchhhhhcc---cceEEEeecccce
Confidence            99863             57899999999999999876311  112334577789999999975   4689999999999


Q ss_pred             EEEEeecCCCcccceEeeccccCeEEEEeecCC-CEEEEEeCCCcEEEeEc
Q 036510          238 IIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTG-NILAVADGNNNVTLWEE  287 (288)
Q Consensus       238 ~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg-~~l~s~~~d~~v~~w~~  287 (288)
                      ++||++...   ....+..+...|++++|+|+| ++||+|+.|++|+|||.
T Consensus       252 ~~wd~~~~~---~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~  299 (357)
T 4g56_B          252 SLVNIKNPD---SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDA  299 (357)
T ss_dssp             EEEESSCGG---GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred             eEEECCCCc---EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEEC
Confidence            999987532   234556778899999999998 57999999999999995

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=9.8e-39  Score=274.04  Aligned_cols=272  Identities=31%  Similarity=0.558  Sum_probs=213.6

Q ss_pred             CCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCC--ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCc
Q 036510            3 PQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNT--SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGT   80 (288)
Q Consensus         3 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~   80 (288)
                      .+.++.+|++.|++++|+|+|++|++|+.|++|++|++....  .+....+.+|...|.+++|++..++.+|++++.|++
T Consensus         3 ~~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~   82 (351)
T 3f3f_A            3 MQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT   82 (351)
T ss_dssp             CCCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             ccccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence            456778999999999999999999999999999999996432  245777889999999999986324789999999999


Q ss_pred             EEEeecCCCC------ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEe----------
Q 036510           81 VIIWKEGNSN------EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRI----------  144 (288)
Q Consensus        81 v~iwd~~~~~------~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~----------  144 (288)
                      |++||+..+.      .+.....+..|...|.+++|+|+..+.++++++.|+.|++||+++.........          
T Consensus        83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  162 (351)
T 3f3f_A           83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP  162 (351)
T ss_dssp             EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred             EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence            9999997642      123456677899999999999974356799999999999999987543221110          


Q ss_pred             eccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCC
Q 036510          145 DQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLP  224 (288)
Q Consensus       145 ~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~  224 (288)
                      ...|...+.++.|+|+...           ..++++++.|+.+.+|+...+.  ...+..+.+|...|.+++|+|+....
T Consensus       163 ~~~~~~~~~~~~~~p~~~~-----------~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~i~~~~~~p~~~~~  229 (351)
T 3f3f_A          163 PANHLQSDFCLSWCPSRFS-----------PEKLAVSALEQAIIYQRGKDGK--LHVAAKLPGHKSLIRSISWAPSIGRW  229 (351)
T ss_dssp             CSSCSCCCEEEEECCCSSS-----------CCEEEEEETTEEEEEEECTTSC--EEEEEECCCCCSCEEEEEECCCSSCS
T ss_pred             cCCcccceeEEEeccCCCC-----------CcEEEEecCCCcEEEEccCCCc--eeeeeecCCCCcceeEEEECCCCCCc
Confidence            1256778999999997211           2679999999999777765542  23456778899999999999984111


Q ss_pred             CcEEEEEeCCCcEEEEEeecCCCc-------------------------------------------ccceEeeccccCe
Q 036510          225 KSTIASASEDGKVIIWTVAREGDQ-------------------------------------------WEGKVLHDFKTPV  261 (288)
Q Consensus       225 ~~~l~s~s~D~~i~iw~~~~~~~~-------------------------------------------~~~~~~~~~~~~i  261 (288)
                      ..+|++|+.|+.|++||++.....                                           .....+..|..+|
T Consensus       230 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  309 (351)
T 3f3f_A          230 YQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEV  309 (351)
T ss_dssp             SEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCE
T ss_pred             ceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccE
Confidence            168999999999999999863110                                           1112234567899


Q ss_pred             EEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          262 YRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       262 ~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ++++|+|+|++|++|+.|++|+||++
T Consensus       310 ~~~~~s~~~~~l~s~~~dg~v~iw~~  335 (351)
T 3f3f_A          310 WSVSWNLTGTILSSAGDDGKVRLWKA  335 (351)
T ss_dssp             EEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred             EEEEEcCCCCEEEEecCCCcEEEEec
Confidence            99999999999999999999999995

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5.3e-39  Score=276.31  Aligned_cols=253  Identities=20%  Similarity=0.267  Sum_probs=200.0

Q ss_pred             cccccccceEEEEEcCC-CCEEEEeeCCCcEEEEEeCCCC---ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcE
Q 036510            6 IETGHEDTVHDVAMDYY-GKRLATASSDYSIKIIGVGNNT---SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTV   81 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~-g~~l~s~~~d~~i~lwd~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v   81 (288)
                      .+.||++.|++|+|+|+ +++|+|||.|++|+|||+....   ..+...+.+|...|.+++|+++  +++|++++.|+.|
T Consensus        33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~d--g~~l~s~~~d~~i  110 (340)
T 4aow_A           33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD--GQFALSGSWDGTL  110 (340)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTT--SSEEEEEETTSEE
T ss_pred             EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCC--CCEEEEEcccccc
Confidence            46799999999999997 6899999999999999986432   3456788999999999999864  8899999999999


Q ss_pred             EEeecCCCCc----------------------------------------eEEeEEeecCCCceeEEEeccCCCCeEEEE
Q 036510           82 IIWKEGNSNE----------------------------------------WIKDHVFEDHKSSVNSIDWAPHELGLCLAC  121 (288)
Q Consensus        82 ~iwd~~~~~~----------------------------------------~~~~~~~~~h~~~v~~l~~~p~~~~~~l~s  121 (288)
                      ++|+......                                        .........|...+.+++|+++....++++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s  190 (340)
T 4aow_A          111 RLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS  190 (340)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEE
T ss_pred             eEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEE
Confidence            9998643210                                        000112335788899999999876778899


Q ss_pred             EeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeee
Q 036510          122 GSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDC  201 (288)
Q Consensus       122 g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  201 (288)
                      ++.|+.|++||++...   ......+|...|.++.|+|++              ++|++|+.|++|++||+++.    ++
T Consensus       191 ~~~d~~i~i~d~~~~~---~~~~~~~h~~~v~~~~~s~~~--------------~~l~s~s~Dg~i~iwd~~~~----~~  249 (340)
T 4aow_A          191 CGWDKLVKVWNLANCK---LKTNHIGHTGYLNTVTVSPDG--------------SLCASGGKDGQAMLWDLNEG----KH  249 (340)
T ss_dssp             EETTSCEEEEETTTTE---EEEEECCCSSCEEEEEECTTS--------------SEEEEEETTCEEEEEETTTT----EE
T ss_pred             EcCCCEEEEEECCCCc---eeeEecCCCCcEEEEEECCCC--------------CEEEEEeCCCeEEEEEeccC----ce
Confidence            9999999999998653   334567899999999999987              78999999999999999875    33


Q ss_pred             eeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCc------ccceEeeccccCeEEEEeecCCCEEEE
Q 036510          202 FPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ------WEGKVLHDFKTPVYRVSWSLTGNILAV  275 (288)
Q Consensus       202 ~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~------~~~~~~~~~~~~i~~~~~spdg~~l~s  275 (288)
                      +..+. +...|.++.|+|+     .++++++.|+.|++||++.....      ........+...|++++|+|||++|++
T Consensus       250 ~~~~~-~~~~v~~~~~~~~-----~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s  323 (340)
T 4aow_A          250 LYTLD-GGDIINALCFSPN-----RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA  323 (340)
T ss_dssp             EEEEE-CSSCEEEEEECSS-----SSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEE
T ss_pred             eeeec-CCceEEeeecCCC-----CceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEE
Confidence            44444 3457999999997     35788889999999998643110      001112345678999999999999999


Q ss_pred             EeCCCcEEEeEc
Q 036510          276 ADGNNNVTLWEE  287 (288)
Q Consensus       276 ~~~d~~v~~w~~  287 (288)
                      |+.||+|+|||+
T Consensus       324 gs~Dg~v~iW~~  335 (340)
T 4aow_A          324 GYTDNLVRVWQV  335 (340)
T ss_dssp             EETTSCEEEEEE
T ss_pred             EeCCCEEEEEeC
Confidence            999999999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=5.7e-39  Score=273.92  Aligned_cols=248  Identities=21%  Similarity=0.284  Sum_probs=203.6

Q ss_pred             ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510            7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE   86 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~   86 (288)
                      +.+|+..|.+++|+|++++|++|+.|++|++||+..  ++.+..+.+|.+.|++++|+++  +.+|++|+.|++|++||+
T Consensus        51 ~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~~~--~~~l~sgs~D~~v~lWd~  126 (304)
T 2ynn_A           51 IQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT--GEKVVDFEAHPDYIRSIAVHPT--KPYVLSGSDDLTVKLWNW  126 (304)
T ss_dssp             EECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECSS--SSEEEEEETTSCEEEEEG
T ss_pred             eeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC--CcEEEEEeCCCCcEEEEEEcCC--CCEEEEECCCCeEEEEEC
Confidence            457899999999999999999999999999999854  4678889999999999999864  789999999999999999


Q ss_pred             CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCce
Q 036510           87 GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGAL  166 (288)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~  166 (288)
                      +++..  ....+.+|...|.+++|+|.+ +.++++|+.|++|++||++.....  .....+|...+..+.|+|...    
T Consensus       127 ~~~~~--~~~~~~~h~~~v~~v~~~p~~-~~~l~sgs~D~~v~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~----  197 (304)
T 2ynn_A          127 ENNWA--LEQTFEGHEHFVMCVAFNPKD-PSTFASGCLDRTVKVWSLGQSTPN--FTLTTGQERGVNYVDYYPLPD----  197 (304)
T ss_dssp             GGTTE--EEEEECCCCSCEEEEEECTTC-TTEEEEEETTSEEEEEETTCSSCS--EEEECCCTTCEEEEEECCSTT----
T ss_pred             CCCcc--hhhhhcccCCcEEEEEECCCC-CCEEEEEeCCCeEEEEECCCCCcc--ceeccCCcCcEEEEEEEEcCC----
Confidence            76532  345678899999999999953 567999999999999999765432  233345667899999987431    


Q ss_pred             ecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCC
Q 036510          167 VGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG  246 (288)
Q Consensus       167 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~  246 (288)
                              +.+|++|+.|++|++||++++    +++..+.+|...|.++.|+|+.    .+|++|+.|++|++||++..+
T Consensus       198 --------~~~l~s~s~D~~i~iWd~~~~----~~~~~~~~h~~~v~~~~~~p~~----~~l~s~s~Dg~i~iWd~~~~~  261 (304)
T 2ynn_A          198 --------KPYMITASDDLTIKIWDYQTK----SCVATLEGHMSNVSFAVFHPTL----PIIISGSEDGTLKIWNSSTYK  261 (304)
T ss_dssp             --------CCEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEECSSS----SEEEEEETTSCEEEEETTTCC
T ss_pred             --------CCEEEEEcCCCeEEEEeCCCC----ccceeeCCCCCCEEEEEECCCC----CEEEEEcCCCeEEEEECCCCc
Confidence                    268999999999999999876    4667889999999999999984    689999999999999987532


Q ss_pred             CcccceEeeccccCeEEEEeecCCC--EEEEEeCCCcEEEeEc
Q 036510          247 DQWEGKVLHDFKTPVYRVSWSLTGN--ILAVADGNNNVTLWEE  287 (288)
Q Consensus       247 ~~~~~~~~~~~~~~i~~~~~spdg~--~l~s~~~d~~v~~w~~  287 (288)
                         ....+..+...+.+++|+|+|.  ++++|+. +.+.+|++
T Consensus       262 ---~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~-~g~~~~~~  300 (304)
T 2ynn_A          262 ---VEKTLNVGLERSWCIATHPTGRKNYIASGFD-NGFTVLSL  300 (304)
T ss_dssp             ---EEEEECCSSSSEEEEEECTTCGGGCEEEEET-TEEEEEEC
T ss_pred             ---eeeeccCCCccEEEEEECCCCCceEEEEecC-CceEEEEe
Confidence               2234455667899999999985  4677655 45557764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=5.8e-39  Score=278.32  Aligned_cols=250  Identities=17%  Similarity=0.274  Sum_probs=196.5

Q ss_pred             ccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510            5 KIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW   84 (288)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw   84 (288)
                      +.+.+|...|.+++|+|++++|++|+.|++|++||+..  ++.+..+.+|...|++++|+++  +.+|++++.|++|++|
T Consensus        70 ~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~--~~~~~~~~~h~~~v~~v~~sp~--~~~l~s~~~d~~i~~w  145 (343)
T 2xzm_R           70 KALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT--GTTYKRFVGHQSEVYSVAFSPD--NRQILSAGAEREIKLW  145 (343)
T ss_dssp             EEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTS--SCEEEEEECCCSCEEEEEECSS--TTEEEEEETTSCEEEE
T ss_pred             chhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC--CcEEEEEcCCCCcEEEEEECCC--CCEEEEEcCCCEEEEE
Confidence            34679999999999999999999999999999999854  3678889999999999999864  8899999999999999


Q ss_pred             ecCCCCceEEeEEeecCCCceeEEEeccCCC--------CeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEE
Q 036510           85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHEL--------GLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVS  156 (288)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~--------~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~  156 (288)
                      |+.. ...........|...|.+++|+|+..        +.++++++.|+.|++||.+.    .......+|...|.++.
T Consensus       146 d~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~h~~~v~~~~  220 (343)
T 2xzm_R          146 NILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF----QIRYTFKAHESNVNHLS  220 (343)
T ss_dssp             ESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT----EEEEEEECCSSCEEEEE
T ss_pred             eccC-CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC----ceeEEEcCccccceEEE
Confidence            9863 21111111236888999999999742        25799999999999999432    23345578999999999


Q ss_pred             eCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCc
Q 036510          157 WAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGK  236 (288)
Q Consensus       157 ~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~  236 (288)
                      |+|++              ++|++|+.|+.|++||+.....   ....+ .+...|.+++|+|+.    . +++++.|+.
T Consensus       221 ~s~~g--------------~~l~sgs~dg~v~iwd~~~~~~---~~~~~-~~~~~v~~v~~sp~~----~-~la~~~d~~  277 (343)
T 2xzm_R          221 ISPNG--------------KYIATGGKDKKLLIWDILNLTY---PQREF-DAGSTINQIAFNPKL----Q-WVAVGTDQG  277 (343)
T ss_dssp             ECTTS--------------SEEEEEETTCEEEEEESSCCSS---CSEEE-ECSSCEEEEEECSSS----C-EEEEEESSC
T ss_pred             ECCCC--------------CEEEEEcCCCeEEEEECCCCcc---cceee-cCCCcEEEEEECCCC----C-EEEEECCCC
Confidence            99987              7899999999999999854321   11122 245569999999974    3 455667889


Q ss_pred             EEEEEeecCCCcccceEe-----------eccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          237 VIIWTVAREGDQWEGKVL-----------HDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       237 i~iw~~~~~~~~~~~~~~-----------~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      |++|++....... ...+           .++...|.+++|+|+|++|++|+.||+|++|+.
T Consensus       278 v~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~  338 (343)
T 2xzm_R          278 VKIFNLMTQSKAP-VCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSF  338 (343)
T ss_dssp             EEEEESSSCCSCS-EEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEE
T ss_pred             EEEEEeCCCCCCc-eEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEE
Confidence            9999986532211 0011           145668999999999999999999999999995

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.9e-40  Score=288.15  Aligned_cols=262  Identities=18%  Similarity=0.264  Sum_probs=204.4

Q ss_pred             CCCCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCc
Q 036510            1 MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGT   80 (288)
Q Consensus         1 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~   80 (288)
                      |+.+.+...|.+.|.+++|+|+|++|++|+.|++|++|++.....+.+..+.+|...|++++|+++  +++|++++.|++
T Consensus         1 m~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~s~d~~   78 (377)
T 3dwl_C            1 MATSQVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPK--SNRIVTCSQDRN   78 (377)
T ss_dssp             -CCEEEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTT--TCCEEEEETTSS
T ss_pred             CCcceeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCC--CCEEEEEeCCCe
Confidence            777777777889999999999999999999999999999965433567888999999999999865  789999999999


Q ss_pred             EEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeecc-CCCCeeEEEeCC
Q 036510           81 VIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQA-HPVGVTSVSWAP  159 (288)
Q Consensus        81 v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~v~~i~~~p  159 (288)
                      |++||+.++..+.....+..|...|.+++|+|+  +.++++|+.|+.|++||++.+..+........ |...|.++.|+|
T Consensus        79 v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~  156 (377)
T 3dwl_C           79 AYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPN--EDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP  156 (377)
T ss_dssp             EEEC------CCCCEEECCCCSSCEEEEECCTT--SSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT
T ss_pred             EEEEEcCCCCceeeeeEecccCCceEEEEECCC--CCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC
Confidence            999999765423334556789999999999997  56789999999999999987653333344455 999999999999


Q ss_pred             CCCCCceecccccCCCceeEEeecCCcEEEEEEeCCc--------------eeeeeeeccccCCcceEEEEecCCCCCCC
Q 036510          160 STAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGI--------------WKMDCFPALQMHTDWVRDVAWAPNLGLPK  225 (288)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--------------~~~~~~~~~~~h~~~V~~v~~sp~~~~~~  225 (288)
                      ++              ++|++++.|++|++||+....              ...+++..+ +|...|.+++|+|++    
T Consensus       157 ~~--------------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~----  217 (377)
T 3dwl_C          157 NN--------------VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG----  217 (377)
T ss_dssp             TS--------------SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS----
T ss_pred             CC--------------CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC----
Confidence            87              789999999999999995321              112345556 899999999999984    


Q ss_pred             cEEEEEeCCCcEEEEEeecCCCcc-cceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          226 STIASASEDGKVIIWTVAREGDQW-EGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       226 ~~l~s~s~D~~i~iw~~~~~~~~~-~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      .+|++++.|++|++||+.....+. ....+..|..+|.+++|+|+|++|++|+.|+.+ +|+
T Consensus       218 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~  278 (377)
T 3dwl_C          218 NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQ  278 (377)
T ss_dssp             SCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EEC
T ss_pred             CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEE
Confidence            689999999999999998653211 023445677899999999999999999766666 665

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.9e-38  Score=278.96  Aligned_cols=247  Identities=26%  Similarity=0.349  Sum_probs=200.2

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN   90 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~   90 (288)
                      ...|.+++|+|+|++|++|+.|++|++||+..  .+.+..+.+|...|++++|+++  +.+|++++.|++|++||++++.
T Consensus       123 ~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~--~~~~~~~~~h~~~v~~~~~~p~--~~~l~s~s~d~~v~iwd~~~~~  198 (393)
T 1erj_A          123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIEN--RKIVMILQGHEQDIYSLDYFPS--GDKLVSGSGDRTVRIWDLRTGQ  198 (393)
T ss_dssp             CCBEEEEEECTTSSEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTTE
T ss_pred             ceeEEEEEECCCCCEEEEEcCCCeEEEEECCC--CcEEEEEccCCCCEEEEEEcCC--CCEEEEecCCCcEEEEECCCCe
Confidence            34599999999999999999999999999854  4678889999999999999864  8899999999999999998754


Q ss_pred             ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEE----eeccCCCCeeEEEeCCCCCCCce
Q 036510           91 EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSR----IDQAHPVGVTSVSWAPSTAPGAL  166 (288)
Q Consensus        91 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~----~~~~~~~~v~~i~~~p~~~~~~~  166 (288)
                         ....+. +...+.+++|+|.+ +.++++|+.|+.|++||++.+.......    ...+|...|.++.|+|++     
T Consensus       199 ---~~~~~~-~~~~v~~~~~~~~~-~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g-----  268 (393)
T 1erj_A          199 ---CSLTLS-IEDGVTTVAVSPGD-GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-----  268 (393)
T ss_dssp             ---EEEEEE-CSSCEEEEEECSTT-CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS-----
T ss_pred             ---eEEEEE-cCCCcEEEEEECCC-CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCC-----
Confidence               223343 56789999999943 6789999999999999998754322111    124788899999999987     


Q ss_pred             ecccccCCCceeEEeecCCcEEEEEEeCCce--------eeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEE
Q 036510          167 VGSGFLDPVQKLCSGGCDNTVKVWKLYNGIW--------KMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVI  238 (288)
Q Consensus       167 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--------~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~  238 (288)
                               ++|++|+.|++|++||++....        ...+...+.+|...|.+++|+|+.    .+|++|+.|++|+
T Consensus       269 ---------~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~l~sgs~D~~v~  335 (393)
T 1erj_A          269 ---------QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND----EYILSGSKDRGVL  335 (393)
T ss_dssp             ---------SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG----CEEEEEETTSEEE
T ss_pred             ---------CEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCC----CEEEEEeCCCeEE
Confidence                     7899999999999999875321        112345667899999999999974    6899999999999


Q ss_pred             EEEeecCCCcccceEeeccccCeEEEEeec------CCCEEEEEeCCCcEEEeEc
Q 036510          239 IWTVAREGDQWEGKVLHDFKTPVYRVSWSL------TGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       239 iw~~~~~~~~~~~~~~~~~~~~i~~~~~sp------dg~~l~s~~~d~~v~~w~~  287 (288)
                      +||++...   ....+.+|.+.|.+++|+|      ++++|++|+.|++|+||+.
T Consensus       336 iwd~~~~~---~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~  387 (393)
T 1erj_A          336 FWDKKSGN---PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY  387 (393)
T ss_dssp             EEETTTCC---EEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             EEECCCCe---EEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcc
Confidence            99987532   2245567888999999886      7899999999999999995

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.8e-38  Score=277.03  Aligned_cols=248  Identities=22%  Similarity=0.331  Sum_probs=193.8

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEecccc------------------CeEEEEecCCCCCC
Q 036510            9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKG------------------AVWEVAWAHPKFGS   70 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~------------------~v~~~~~~~~~~~~   70 (288)
                      +|...|.+++|+|+|++|++|+ |+++++|++..+  +.+..+.+|..                  .|.+++|+++  ++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d--g~  136 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDG--SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD--GK  136 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTC--CEEEEECC-----------------CCCCBEEEEEECTT--SS
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCC--CEEEEecCccccccccccccccccCCCceeEEEEEECCC--CC
Confidence            6999999999999999999876 789999998543  45555655432                  3899999864  89


Q ss_pred             EEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCC
Q 036510           71 ILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV  150 (288)
Q Consensus        71 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~  150 (288)
                      +|++|+.|++|++||+.++.   ....+.+|...|.+++|+|+  +.++++|+.|++|++||++++...   .. ..+..
T Consensus       137 ~l~s~~~d~~i~iwd~~~~~---~~~~~~~h~~~v~~~~~~p~--~~~l~s~s~d~~v~iwd~~~~~~~---~~-~~~~~  207 (393)
T 1erj_A          137 FLATGAEDRLIRIWDIENRK---IVMILQGHEQDIYSLDYFPS--GDKLVSGSGDRTVRIWDLRTGQCS---LT-LSIED  207 (393)
T ss_dssp             EEEEEETTSCEEEEETTTTE---EEEEECCCSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTTEEE---EE-EECSS
T ss_pred             EEEEEcCCCeEEEEECCCCc---EEEEEccCCCCEEEEEEcCC--CCEEEEecCCCcEEEEECCCCeeE---EE-EEcCC
Confidence            99999999999999997654   45567889999999999998  567999999999999999865321   11 13556


Q ss_pred             CeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeee---eeccccCCcceEEEEecCCCCCCCcE
Q 036510          151 GVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDC---FPALQMHTDWVRDVAWAPNLGLPKST  227 (288)
Q Consensus       151 ~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~h~~~V~~v~~sp~~~~~~~~  227 (288)
                      .+.++.|+|..             +++|++|+.|++|++||++++......   .....+|...|.+++|+|++    .+
T Consensus       208 ~v~~~~~~~~~-------------~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g----~~  270 (393)
T 1erj_A          208 GVTTVAVSPGD-------------GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG----QS  270 (393)
T ss_dssp             CEEEEEECSTT-------------CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS----SE
T ss_pred             CcEEEEEECCC-------------CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCC----CE
Confidence            79999999943             278999999999999998776321111   01225799999999999984    78


Q ss_pred             EEEEeCCCcEEEEEeecCCCc---------ccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          228 IASASEDGKVIIWTVAREGDQ---------WEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       228 l~s~s~D~~i~iw~~~~~~~~---------~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      |++|+.|++|++||++.....         .....+.+|...|.+++|+|++++|++|+.|++|++||.
T Consensus       271 l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~  339 (393)
T 1erj_A          271 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK  339 (393)
T ss_dssp             EEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred             EEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            999999999999998753211         011234567788999999999999999999999999995

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=8.3e-38  Score=266.99  Aligned_cols=245  Identities=23%  Similarity=0.371  Sum_probs=201.1

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      .+.+|.+.|.+++|+|+|++|++|+.|++|++|+...  ++....+.+|...|.+++|+++  +++|++++.|+.|++||
T Consensus        18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~vwd   93 (312)
T 4ery_A           18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD--GKFEKTISGHKLGISDVAWSSD--SNLLVSASDDKTLKIWD   93 (312)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEEEECTT--SSEEEEEETTSEEEEEE
T ss_pred             EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC--cccchhhccCCCceEEEEEcCC--CCEEEEECCCCEEEEEE
Confidence            4569999999999999999999999999999999854  3567788999999999999864  89999999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      +.++.   ....+.+|...|.+++|+|+  +.++++|+.|+.|++||++++..   ......|...|.++.|+|++    
T Consensus        94 ~~~~~---~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~----  161 (312)
T 4ery_A           94 VSSGK---CLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVKTGKC---LKTLPAHSDPVSAVHFNRDG----  161 (312)
T ss_dssp             TTTCC---EEEEEECCSSCEEEEEECSS--SSEEEEEETTSCEEEEETTTCCE---EEEECCCSSCEEEEEECTTS----
T ss_pred             CCCCc---EEEEEcCCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCEE---EEEecCCCCcEEEEEEcCCC----
Confidence            98765   45567889999999999997  67899999999999999986532   34456788899999999987    


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeec-cccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPA-LQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR  244 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~  244 (288)
                                .+|++++.|+.|++||++++.    .+.. ...|...|..++|+|++    .+|++++.|+.|++||++.
T Consensus       162 ----------~~l~~~~~d~~i~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~d~~i~iwd~~~  223 (312)
T 4ery_A          162 ----------SLIVSSSYDGLCRIWDTASGQ----CLKTLIDDDNPPVSFVKFSPNG----KYILAATLDNTLKLWDYSK  223 (312)
T ss_dssp             ----------SEEEEEETTSCEEEEETTTCC----EEEEECCSSCCCEEEEEECTTS----SEEEEEETTTEEEEEETTT
T ss_pred             ----------CEEEEEeCCCcEEEEECCCCc----eeeEEeccCCCceEEEEECCCC----CEEEEEcCCCeEEEEECCC
Confidence                      789999999999999998763    2222 24566789999999984    7899999999999999875


Q ss_pred             CCCcccceEeeccccC--eEEEEee-cCCCEEEEEeCCCcEEEeEc
Q 036510          245 EGDQWEGKVLHDFKTP--VYRVSWS-LTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       245 ~~~~~~~~~~~~~~~~--i~~~~~s-pdg~~l~s~~~d~~v~~w~~  287 (288)
                      ..   ....+..+...  .....|+ +++++|++|+.|++|++||+
T Consensus       224 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~  266 (312)
T 4ery_A          224 GK---CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL  266 (312)
T ss_dssp             TE---EEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEET
T ss_pred             Cc---EEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEEC
Confidence            31   12233334332  2233444 68899999999999999995

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-38  Score=302.00  Aligned_cols=280  Identities=46%  Similarity=0.813  Sum_probs=218.5

Q ss_pred             CccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510            4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVII   83 (288)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i   83 (288)
                      ..++.+|++.|++++|+|+|++|++|+.|++|++|++..+..+.+..+.+|.+.|++++|+++.++++|++|+.||+|++
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   81 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence            34678999999999999999999999999999999997556677888999999999999987655899999999999999


Q ss_pred             eecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCC
Q 036510           84 WKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAP  163 (288)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~  163 (288)
                      ||+.++. +.....+..|...|.+++|+|+..+.++++|+.||.|++||++...... .....+|...|.++.|+|....
T Consensus        82 wd~~~~~-~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~-~~~~~~~~~~v~~l~~~p~~~~  159 (753)
T 3jro_A           82 WKEENGR-WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS-PIIIDAHAIGVNSASWAPATIE  159 (753)
T ss_dssp             EEEETTE-EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCC-CEEEECCSSCEEEEEECCCC--
T ss_pred             EECCCCc-ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcc-eeEeecCCCceEEEEecCcccc
Confidence            9997643 3345567789999999999997445689999999999999998763322 2344678999999999995210


Q ss_pred             CceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEee
Q 036510          164 GALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA  243 (288)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~  243 (288)
                      .... .....++..+++|+.|+.|++||++++.....+...+.+|...|.+++|+|+.. .+.+|++|+.|+.|++||+.
T Consensus       160 ~~~~-~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~~~~l~s~s~Dg~I~iwd~~  237 (753)
T 3jro_A          160 EDGE-HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL-LRSYLASVSQDRTCIIWTQD  237 (753)
T ss_dssp             --------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS-SSEEEEEEESSSCEEEEEES
T ss_pred             cccc-cccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCC-CCCEEEEEecCCEEEEecCC
Confidence            0000 000112378999999999999999987544456667789999999999999720 03789999999999999998


Q ss_pred             cCCCcccce--EeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          244 REGDQWEGK--VLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       244 ~~~~~~~~~--~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      .........  ....+...|++++|+|+|++|++|+.||.|+||+.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~  283 (753)
T 3jro_A          238 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (753)
T ss_dssp             SSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred             CCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence            643221111  12346678999999999999999999999999985

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.6e-37  Score=263.93  Aligned_cols=247  Identities=23%  Similarity=0.365  Sum_probs=204.1

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      .+.+|...|.+++|+|++++|++|+.|++|++||+..  .+.+..+.+|...|.+++|+++  +.+|++++.|++|++||
T Consensus        60 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~d~~i~iwd  135 (312)
T 4ery_A           60 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS--GKCLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWD  135 (312)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECSS--SSEEEEEETTSCEEEEE
T ss_pred             hhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC--CcEEEEEcCCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEE
Confidence            4568999999999999999999999999999999854  3668889999999999999864  88999999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      ++++.   ....+..|..+|.++.|+|+  +.++++|+.|+.|++||++.+...  ......+...+..+.|+|++    
T Consensus       136 ~~~~~---~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~----  204 (312)
T 4ery_A          136 VKTGK---CLKTLPAHSDPVSAVHFNRD--GSLIVSSSYDGLCRIWDTASGQCL--KTLIDDDNPPVSFVKFSPNG----  204 (312)
T ss_dssp             TTTCC---EEEEECCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTCCEE--EEECCSSCCCEEEEEECTTS----
T ss_pred             CCCCE---EEEEecCCCCcEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCcee--eEEeccCCCceEEEEECCCC----
Confidence            98765   44567789999999999997  668999999999999999875422  22334566779999999987    


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceE--EEEecCCCCCCCcEEEEEeCCCcEEEEEee
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVR--DVAWAPNLGLPKSTIASASEDGKVIIWTVA  243 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~--~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~  243 (288)
                                ++|++++.|+.|++||++++    +++..+.+|...+.  ...|++..   +.+|++|+.|+.|++||++
T Consensus       205 ----------~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~sg~~dg~i~vwd~~  267 (312)
T 4ery_A          205 ----------KYILAATLDNTLKLWDYSKG----KCLKTYTGHKNEKYCIFANFSVTG---GKWIVSGSEDNLVYIWNLQ  267 (312)
T ss_dssp             ----------SEEEEEETTTEEEEEETTTT----EEEEEECSSCCSSSCCCEEEECSS---SCEEEECCTTSCEEEEETT
T ss_pred             ----------CEEEEEcCCCeEEEEECCCC----cEEEEEEecCCceEEEEEEEEeCC---CcEEEEECCCCEEEEEECC
Confidence                      78999999999999999876    34555666765432  23455432   4689999999999999987


Q ss_pred             cCCCcccceEeeccccCeEEEEeecCCCEEEEEe--CCCcEEEeEc
Q 036510          244 REGDQWEGKVLHDFKTPVYRVSWSLTGNILAVAD--GNNNVTLWEE  287 (288)
Q Consensus       244 ~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~--~d~~v~~w~~  287 (288)
                      ...   ....+.+|...|.+++|+|++++|++++  .|++|+||+.
T Consensus       268 ~~~---~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~  310 (312)
T 4ery_A          268 TKE---IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS  310 (312)
T ss_dssp             TCC---EEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred             Cch---hhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence            542   2345567888999999999999999997  6999999985

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.2e-37  Score=286.79  Aligned_cols=239  Identities=31%  Similarity=0.497  Sum_probs=205.8

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      .+.+|...|.+++|+|+|++|++++.|+++++|+.+   .+.+..+.+|...|.+++|+++  +++|++++.|++|++||
T Consensus       339 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~---~~~~~~~~~~~~~v~~~~~s~d--g~~l~~~~~d~~v~~~~  413 (577)
T 2ymu_A          339 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN---GQLLQTLTGHSSSVRGVAFSPD--GQTIASASDDKTVKLWN  413 (577)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT---CCEEEEEECCSSCEEEEEECTT--SSCEEEEETTSEEEEEC
T ss_pred             EEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC---CCEEEEecCCCCCeEEEEECCC--CCEEEEEeCCCEEEEEe
Confidence            346899999999999999999999999999999964   3567889999999999999865  89999999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      .. +.   ....+.+|...|++++|+|+  +.++++++.|+.|++|+...    .......+|...|.++.|+|++    
T Consensus       414 ~~-~~---~~~~~~~~~~~v~~~~~s~d--~~~l~~~~~d~~v~~w~~~~----~~~~~~~~~~~~v~~~~~spd~----  479 (577)
T 2ymu_A          414 RN-GQ---LLQTLTGHSSSVWGVAFSPD--DQTIASASDDKTVKLWNRNG----QLLQTLTGHSSSVRGVAFSPDG----  479 (577)
T ss_dssp             TT-CC---EEEEEECCSSCEEEEEECTT--SSEEEEEETTSEEEEEETTS----CEEEEEECCSSCEEEEEECTTS----
T ss_pred             CC-CC---EEEEecCCCCCeEEEEECCC--CCEEEEEcCCCEEEEEECCC----CEEEEEcCCCCCEEEEEEcCCC----
Confidence            63 33   44567889999999999998  56899999999999999632    2234556899999999999987    


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE  245 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~  245 (288)
                                ++|++++.|++|++||. ++    +++..+.+|...|++++|+|++    ++||+++.|+.|++||... 
T Consensus       480 ----------~~las~~~d~~i~iw~~-~~----~~~~~~~~h~~~v~~l~~s~dg----~~l~s~~~dg~v~lwd~~~-  539 (577)
T 2ymu_A          480 ----------QTIASASDDKTVKLWNR-NG----QLLQTLTGHSSSVRGVAFSPDG----QTIASASDDKTVKLWNRNG-  539 (577)
T ss_dssp             ----------CEEEEEETTSEEEEEET-TS----CEEEEEECCSSCEEEEEECTTS----SCEEEEETTSEEEEECTTS-
T ss_pred             ----------CEEEEEeCCCEEEEEcC-CC----CEEEEEeCCCCCEEEEEEcCCC----CEEEEEECcCEEEEEeCCC-
Confidence                      78999999999999995 33    3566788999999999999984    6899999999999999532 


Q ss_pred             CCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          246 GDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       246 ~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                       .  ....+.+|.++|++++|+|||++|++++.|++|+|||
T Consensus       540 -~--~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          540 -Q--LLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             -C--EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             -C--EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence             1  2345577889999999999999999999999999997

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.4e-37  Score=293.32  Aligned_cols=250  Identities=24%  Similarity=0.362  Sum_probs=203.4

Q ss_pred             cccccccceEEEEEcCCC-CEEEEeeCCCcEEEEEeCCCC---ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcE
Q 036510            6 IETGHEDTVHDVAMDYYG-KRLATASSDYSIKIIGVGNNT---SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTV   81 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~lwd~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v   81 (288)
                      .+.+|++.|++++|++++ ++|+|||.|++|++|++....   ......+.+|...|.+++|+++  +++|+||+.|++|
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~--g~~l~sgs~Dg~v  454 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD--GQFALSGSWDGEL  454 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTT--SSEEEEEETTSEE
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCC--CCEEEEEeCCCcE
Confidence            456999999999999865 799999999999999986422   2446778999999999999864  8999999999999


Q ss_pred             EEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCC
Q 036510           82 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPST  161 (288)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~  161 (288)
                      +|||+.++.   ....+.+|...|.+++|+|+  +.++++|+.|++|++||..............+|...|.++.|+|++
T Consensus       455 ~vwd~~~~~---~~~~~~~h~~~v~~~~~s~~--~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  529 (694)
T 3dm0_A          455 RLWDLAAGV---STRRFVGHTKDVLSVAFSLD--NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT  529 (694)
T ss_dssp             EEEETTTTE---EEEEEECCSSCEEEEEECTT--SSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS
T ss_pred             EEEECCCCc---ceeEEeCCCCCEEEEEEeCC--CCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC
Confidence            999997654   44567899999999999998  5679999999999999975432111111234688899999999986


Q ss_pred             CCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEE
Q 036510          162 APGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT  241 (288)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~  241 (288)
                      .            ...+++++.|++|++||++++    ++...+.+|...|.+++|+|++    ++|++|+.|++|++||
T Consensus       530 ~------------~~~l~s~s~d~~v~vwd~~~~----~~~~~~~~h~~~v~~v~~spdg----~~l~sg~~Dg~i~iwd  589 (694)
T 3dm0_A          530 L------------QPTIVSASWDKTVKVWNLSNC----KLRSTLAGHTGYVSTVAVSPDG----SLCASGGKDGVVLLWD  589 (694)
T ss_dssp             S------------SCEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTS----SEEEEEETTSBCEEEE
T ss_pred             C------------cceEEEEeCCCeEEEEECCCC----cEEEEEcCCCCCEEEEEEeCCC----CEEEEEeCCCeEEEEE
Confidence            2            146999999999999999875    3556778999999999999984    7899999999999999


Q ss_pred             eecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          242 VAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      +.....    .........|.+++|+|++.+|++++ |+.|+|||+
T Consensus       590 ~~~~~~----~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~  630 (694)
T 3dm0_A          590 LAEGKK----LYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDL  630 (694)
T ss_dssp             TTTTEE----EECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEET
T ss_pred             CCCCce----EEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEEC
Confidence            875311    11122346799999999999888765 677999995

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=4.8e-38  Score=281.06  Aligned_cols=212  Identities=16%  Similarity=0.163  Sum_probs=169.2

Q ss_pred             ccccccceEEEEEcC-CCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            7 ETGHEDTVHDVAMDY-YGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~-~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      ..+|+..|++|+|+| ++++||+|+.||+|+|||+.......+..+.+|.+.|++|+|+|. ++.+|+|||.|++|++||
T Consensus       115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~-~~~~l~s~s~D~~v~iwd  193 (435)
T 4e54_B          115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPL-NTNQFYASSMEGTTRLQD  193 (435)
T ss_dssp             EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSS-CTTEEEEECSSSCEEEEE
T ss_pred             CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCC-CCCEEEEEeCCCEEEEee
Confidence            347889999999999 568999999999999999875554556677899999999999853 578999999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      ++... .........+...+.+++|+|+  +.++++|+.||.|++||++...    .....+|...|.++.|+|++.   
T Consensus       194 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~l~~g~~dg~i~~wd~~~~~----~~~~~~h~~~v~~v~~~p~~~---  263 (435)
T 4e54_B          194 FKGNI-LRVFASSDTINIWFCSLDVSAS--SRMVVTGDNVGNVILLNMDGKE----LWNLRMHKKKVTHVALNPCCD---  263 (435)
T ss_dssp             TTSCE-EEEEECCSSCSCCCCCEEEETT--TTEEEEECSSSBEEEEESSSCB----CCCSBCCSSCEEEEEECTTCS---
T ss_pred             ccCCc-eeEEeccCCCCccEEEEEECCC--CCEEEEEeCCCcEeeeccCcce----eEEEecccceEEeeeecCCCc---
Confidence            86532 1111111223446789999998  6789999999999999986431    234568999999999999873   


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR  244 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~  244 (288)
                                .+|++++.|++|+|||++..... .......+|...|.+++|+|++    .+|++++.|++|++||+..
T Consensus       264 ----------~~~~s~s~d~~v~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~spdg----~~l~s~~~D~~i~iwd~~~  327 (435)
T 4e54_B          264 ----------WFLATASVDQTVKIWDLRQVRGK-ASFLYSLPHRHPVNAACFSPDG----ARLLTTDQKSEIRVYSASQ  327 (435)
T ss_dssp             ----------SEEEEEETTSBCCEEETTTCCSS-SCCSBCCBCSSCEEECCBCTTS----SEEEEEESSSCEEEEESSS
T ss_pred             ----------eEEEEecCcceeeEEeccccccc-ceEEEeeeccccccceeECCCC----CeeEEEcCCCEEEEEECCC
Confidence                      57889999999999999765321 1223346899999999999984    7899999999999999864

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.2e-36  Score=264.82  Aligned_cols=255  Identities=19%  Similarity=0.310  Sum_probs=210.4

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      ++..|+++|.+++|+|+|++|++++.|+.|++|++.....+.+..+.+|...|.+++|+++  +++|++++.|+.|++||
T Consensus         3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd   80 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD--SNRIVTCGTDRNAYVWT   80 (372)
T ss_dssp             EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT--TTEEEEEETTSCEEEEE
T ss_pred             eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCC--CCEEEEEcCCCeEEEEE
Confidence            4557999999999999999999999999999999965433378889999999999999864  89999999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeE-EeeccCCCCeeEEEeCCCCCCC
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTS-RIDQAHPVGVTSVSWAPSTAPG  164 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~v~~i~~~p~~~~~  164 (288)
                      +.++. ......+..|...|.+++|+|+  +.++++|+.|+.|++||++....+... .....|...|.++.|+|++   
T Consensus        81 ~~~~~-~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---  154 (372)
T 1k8k_C           81 LKGRT-WKPTLVILRINRAARCVRWAPN--EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS---  154 (372)
T ss_dssp             EETTE-EEEEEECCCCSSCEEEEEECTT--SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS---
T ss_pred             CCCCe-eeeeEEeecCCCceeEEEECCC--CCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC---
Confidence            97653 2233344678999999999998  678999999999999999876543332 3346788999999999986   


Q ss_pred             ceecccccCCCceeEEeecCCcEEEEEEeCCc--------------eeeeeeeccccCCcceEEEEecCCCCCCCcEEEE
Q 036510          165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGI--------------WKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIAS  230 (288)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--------------~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s  230 (288)
                                 ++|++++.|+.|++||++...              ...+++..+.+|...|.+++|+|++    .+|++
T Consensus       155 -----------~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~  219 (372)
T 1k8k_C          155 -----------VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG----SRVAW  219 (372)
T ss_dssp             -----------SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS----SEEEE
T ss_pred             -----------CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC----CEEEE
Confidence                       789999999999999964210              0113455677899999999999974    68999


Q ss_pred             EeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          231 ASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       231 ~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ++.|+.|++||++...   ....+..+..+|.+++|+|+|++|++| .|+.|++|+.
T Consensus       220 ~~~d~~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~  272 (372)
T 1k8k_C          220 VSHDSTVCLADADKKM---AVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTY  272 (372)
T ss_dssp             EETTTEEEEEEGGGTT---EEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEE
T ss_pred             EeCCCEEEEEECCCCc---eeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEc
Confidence            9999999999997542   223445667799999999999999888 9999999985

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.8e-37  Score=291.39  Aligned_cols=249  Identities=20%  Similarity=0.307  Sum_probs=198.0

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      .+.+|...|.+++|+|+|++|+||+.|++|+|||+..  +..+..+.+|...|.+++|+++  +.+|+|+|.|++|++||
T Consensus       425 ~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~--~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~s~D~~i~iwd  500 (694)
T 3dm0_A          425 RLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAA--GVSTRRFVGHTKDVLSVAFSLD--NRQIVSASRDRTIKLWN  500 (694)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEECTT--SSCEEEEETTSCEEEEC
T ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC--CcceeEEeCCCCCEEEEEEeCC--CCEEEEEeCCCEEEEEE
Confidence            4568999999999999999999999999999999854  4678889999999999999864  88999999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      ..............+|...|.+++|+|+....++++|+.|++|++||++...   ......+|...|.++.|+|++    
T Consensus       501 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~---~~~~~~~h~~~v~~v~~spdg----  573 (694)
T 3dm0_A          501 TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK---LRSTLAGHTGYVSTVAVSPDG----  573 (694)
T ss_dssp             TTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTS----
T ss_pred             CCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc---EEEEEcCCCCCEEEEEEeCCC----
Confidence            7543211111112468899999999998655679999999999999998643   234567899999999999987    


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE  245 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~  245 (288)
                                ++|++|+.|++|++||++++.    ++..+. +...|.+++|+|+.    . +++++.|+.|++||++..
T Consensus       574 ----------~~l~sg~~Dg~i~iwd~~~~~----~~~~~~-~~~~v~~~~~sp~~----~-~l~~~~~~~i~iwd~~~~  633 (694)
T 3dm0_A          574 ----------SLCASGGKDGVVLLWDLAEGK----KLYSLE-ANSVIHALCFSPNR----Y-WLCAATEHGIKIWDLESK  633 (694)
T ss_dssp             ----------SEEEEEETTSBCEEEETTTTE----EEECCB-CSSCEEEEEECSSS----S-EEEEEETTEEEEEETTTT
T ss_pred             ----------CEEEEEeCCCeEEEEECCCCc----eEEEec-CCCcEEEEEEcCCC----c-EEEEEcCCCEEEEECCCC
Confidence                      789999999999999998863    344444 34579999999973    3 555566778999998753


Q ss_pred             CCcccceEee-------------------ccccCeEEEEeecCCCEEEEEeCCCcEEEeEcC
Q 036510          246 GDQWEGKVLH-------------------DFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA  288 (288)
Q Consensus       246 ~~~~~~~~~~-------------------~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~~  288 (288)
                      ...   ..+.                   .+.-.+++++|||||++|++|+.||+|+||++.
T Consensus       634 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          634 SIV---EDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEE---EEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CCh---hhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            210   1110                   001137899999999999999999999999963

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=5.3e-36  Score=262.14  Aligned_cols=200  Identities=10%  Similarity=0.094  Sum_probs=156.9

Q ss_pred             eEEEEecCCCCCCEEE--EeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecC
Q 036510           58 VWEVAWAHPKFGSILA--SCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA  135 (288)
Q Consensus        58 v~~~~~~~~~~~~~l~--s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~  135 (288)
                      +..++|+|+  |++++  +++.|++|+|||+.+..   ....+ .|...|.+++|+|+  +.++++++. +.+.+|+..+
T Consensus       136 ~~~v~fSpD--g~~la~as~~~d~~i~iwd~~~~~---~~~~~-~~~~~V~~v~fspd--g~~l~s~s~-~~~~~~~~~~  206 (365)
T 4h5i_A          136 TKLVYISRE--GTVAAIASSKVPAIMRIIDPSDLT---EKFEI-ETRGEVKDLHFSTD--GKVVAYITG-SSLEVISTVT  206 (365)
T ss_dssp             EEEEEECTT--SSCEEEEESCSSCEEEEEETTTTE---EEEEE-ECSSCCCEEEECTT--SSEEEEECS-SCEEEEETTT
T ss_pred             EEEEEEcCC--CCEEEEEECCCCCEEEEeECCCCc---EEEEe-CCCCceEEEEEccC--CceEEeccc-eeEEEEEecc
Confidence            567899875  77765  55689999999998754   33344 37789999999998  677888875 4566777665


Q ss_pred             CCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCC----cEEEEEEeCCceeeeeeeccccCCcc
Q 036510          136 DGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDN----TVKVWKLYNGIWKMDCFPALQMHTDW  211 (288)
Q Consensus       136 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~~h~~~  211 (288)
                      +.. ........|...|.++.|+|++              .++++++.|+    .+++||+............+.+|...
T Consensus       207 ~~~-~~~~~~~~~~~~v~~v~fspdg--------------~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  271 (365)
T 4h5i_A          207 GSC-IARKTDFDKNWSLSKINFIADD--------------TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKG  271 (365)
T ss_dssp             CCE-EEEECCCCTTEEEEEEEEEETT--------------EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSC
T ss_pred             Ccc-eeeeecCCCCCCEEEEEEcCCC--------------CEEEEEecCCcceeEEeecccccceecceeeeeecCCCCC
Confidence            432 2223445788889999999987              7888888887    68889988765444445567889999


Q ss_pred             eEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          212 VRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       212 V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      |++++|+|++    ++||+|+.|++|+|||++..+  .......+|..+|++++|||||++||+||.|++|||||+
T Consensus       272 V~~~~~Spdg----~~lasgs~D~~V~iwd~~~~~--~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~i  341 (365)
T 4h5i_A          272 ITSMDVDMKG----ELAVLASNDNSIALVKLKDLS--MSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKL  341 (365)
T ss_dssp             EEEEEECTTS----CEEEEEETTSCEEEEETTTTE--EEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred             eEeEEECCCC----CceEEEcCCCEEEEEECCCCc--EEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence            9999999984    789999999999999987531  112234568899999999999999999999999999996

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=5.5e-36  Score=275.75  Aligned_cols=240  Identities=32%  Similarity=0.515  Sum_probs=205.4

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      .+.+|...|.+++|+|++++|++++.|++|++|+.+.   ..+..+.+|...|++++|+++  +++|++++.|+++++|+
T Consensus       298 ~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~---~~~~~~~~~~~~v~~~~~s~~--g~~l~~~~~dg~v~~~~  372 (577)
T 2ymu_A          298 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---QHLQTLTGHSSSVWGVAFSPD--GQTIASASDDKTVKLWN  372 (577)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS---CEEEEECCCSSCEEEEEECTT--SSEEEEEETTSEEEEEE
T ss_pred             EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC---CeeEEEeCCCCCEEEEEECCC--CCEEEEEeCCCEEEEEc
Confidence            4568999999999999999999999999999999753   456778899999999999865  89999999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      .. +.   ....+..|...|.+++|+|+  +.++++++.|+.|++||.. +   .......+|...|.++.|+|++    
T Consensus       373 ~~-~~---~~~~~~~~~~~v~~~~~s~d--g~~l~~~~~d~~v~~~~~~-~---~~~~~~~~~~~~v~~~~~s~d~----  438 (577)
T 2ymu_A          373 RN-GQ---LLQTLTGHSSSVRGVAFSPD--GQTIASASDDKTVKLWNRN-G---QLLQTLTGHSSSVWGVAFSPDD----  438 (577)
T ss_dssp             TT-CC---EEEEEECCSSCEEEEEECTT--SSCEEEEETTSEEEEECTT-C---CEEEEEECCSSCEEEEEECTTS----
T ss_pred             CC-CC---EEEEecCCCCCeEEEEECCC--CCEEEEEeCCCEEEEEeCC-C---CEEEEecCCCCCeEEEEECCCC----
Confidence            63 33   44567789999999999998  6779999999999999953 2   2334557899999999999987    


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE  245 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~  245 (288)
                                ++|++++.|++|++||+..     +++..+.+|...|.+++|+|++    ++||+++.|++|++|+.+. 
T Consensus       439 ----------~~l~~~~~d~~v~~w~~~~-----~~~~~~~~~~~~v~~~~~spd~----~~las~~~d~~i~iw~~~~-  498 (577)
T 2ymu_A          439 ----------QTIASASDDKTVKLWNRNG-----QLLQTLTGHSSSVRGVAFSPDG----QTIASASDDKTVKLWNRNG-  498 (577)
T ss_dssp             ----------SEEEEEETTSEEEEEETTS-----CEEEEEECCSSCEEEEEECTTS----CEEEEEETTSEEEEEETTS-
T ss_pred             ----------CEEEEEcCCCEEEEEECCC-----CEEEEEcCCCCCEEEEEEcCCC----CEEEEEeCCCEEEEEcCCC-
Confidence                      7899999999999999643     3456678899999999999984    7899999999999999542 


Q ss_pred             CCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          246 GDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       246 ~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                       .  ....+..|...|++++|+|||++|++++.|++|+|||.
T Consensus       499 -~--~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~  537 (577)
T 2ymu_A          499 -Q--LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR  537 (577)
T ss_dssp             -C--EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred             -C--EEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence             1  23455678889999999999999999999999999984

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-35  Score=256.48  Aligned_cols=251  Identities=19%  Similarity=0.290  Sum_probs=204.2

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      .+.+|++.|.+++|+|+|++|++|+.|+.|++||+..  .+.+..+.+|...|.+++|+++  +++|++++.|++|++||
T Consensus        27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~dg~i~iwd  102 (369)
T 3zwl_B           27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN--GERLGTLDGHTGTIWSIDVDCF--TKYCVTGSADYSIKLWD  102 (369)
T ss_dssp             EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTT--CCEEEEECCCSSCEEEEEECTT--SSEEEEEETTTEEEEEE
T ss_pred             EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCC--chhhhhhhhcCCcEEEEEEcCC--CCEEEEEeCCCeEEEEE
Confidence            4569999999999999999999999999999999854  4678889999999999999864  88999999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC-----CcEEEEeecCCCCeee--------EEeeccCCC--
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD-----GNISVFTARADGGWDT--------SRIDQAHPV--  150 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d-----~~i~i~d~~~~~~~~~--------~~~~~~~~~--  150 (288)
                      +.++.   ....+. |...|.+++|+|+  +.++++++.+     +.|++||++.......        ......|..  
T Consensus       103 ~~~~~---~~~~~~-~~~~v~~~~~~~~--~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (369)
T 3zwl_B          103 VSNGQ---CVATWK-SPVPVKRVEFSPC--GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLD  176 (369)
T ss_dssp             TTTCC---EEEEEE-CSSCEEEEEECTT--SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCC
T ss_pred             CCCCc---EEEEee-cCCCeEEEEEccC--CCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcc
Confidence            98765   333444 7889999999998  6678888888     9999999976532111        112234444  


Q ss_pred             CeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEE
Q 036510          151 GVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIAS  230 (288)
Q Consensus       151 ~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s  230 (288)
                      .+.++.|+|++              ++|++++.|+.|++||+.++.   +.+..+..|...|.+++|+|+.    .+|++
T Consensus       177 ~~~~~~~~~~~--------------~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~----~~l~~  235 (369)
T 3zwl_B          177 AATVAGWSTKG--------------KYIIAGHKDGKISKYDVSNNY---EYVDSIDLHEKSISDMQFSPDL----TYFIT  235 (369)
T ss_dssp             CEEEEEECGGG--------------CEEEEEETTSEEEEEETTTTT---EEEEEEECCSSCEEEEEECTTS----SEEEE
T ss_pred             ceeEEEEcCCC--------------CEEEEEcCCCEEEEEECCCCc---EeEEEEecCCCceeEEEECCCC----CEEEE
Confidence            79999999986              789999999999999998732   3455677899999999999974    78999


Q ss_pred             EeCCCcEEEEEeecCCCcc----------------------------------------------------cceEeeccc
Q 036510          231 ASEDGKVIIWTVAREGDQW----------------------------------------------------EGKVLHDFK  258 (288)
Q Consensus       231 ~s~D~~i~iw~~~~~~~~~----------------------------------------------------~~~~~~~~~  258 (288)
                      ++.|+.|++||++......                                                    ....+..|.
T Consensus       236 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  315 (369)
T 3zwl_B          236 SSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHF  315 (369)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCS
T ss_pred             ecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheeccc
Confidence            9999999999986532100                                                    001123456


Q ss_pred             cCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          259 TPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       259 ~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ..|.+++|+|+|++|++++.|++|+||++
T Consensus       316 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  344 (369)
T 3zwl_B          316 GPLNTVAISPQGTSYASGGEDGFIRLHHF  344 (369)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEEE
T ss_pred             CcEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            78999999999999999999999999995

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.9e-36  Score=270.44  Aligned_cols=259  Identities=20%  Similarity=0.358  Sum_probs=209.1

Q ss_pred             ccccccceEEEEEcCC-CCEEEEeeCCCcEEEEEeCC--------CCceeeEEEeccccCeEEEEecCCCCCC-EEEEee
Q 036510            7 ETGHEDTVHDVAMDYY-GKRLATASSDYSIKIIGVGN--------NTSQHLAKLSGHKGAVWEVAWAHPKFGS-ILASCS   76 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~-g~~l~s~~~d~~i~lwd~~~--------~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s   76 (288)
                      ..+|.+.|++++|+|+ +++|++++.|++|++|++..        .....+..+.+|...|++++|++.  +. +|++++
T Consensus       124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~  201 (430)
T 2xyi_A          124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPN--LNGYLLSAS  201 (430)
T ss_dssp             EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTT--STTEEEEEC
T ss_pred             EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCC--CCCeEEEEe
Confidence            4589999999999997 68999999999999999863        124567888999999999999865  45 999999


Q ss_pred             CCCcEEEeecCCCCc----eEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCe
Q 036510           77 FDGTVIIWKEGNSNE----WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGV  152 (288)
Q Consensus        77 ~d~~v~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v  152 (288)
                      .||+|++|++.....    ......+..|...|.+++|+|++ +.++++++.|+.|++||++.............|...|
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  280 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH-ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV  280 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCC-CCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence            999999999976321    11134566899999999999954 5678999999999999998763222233445788999


Q ss_pred             eEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEe
Q 036510          153 TSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASAS  232 (288)
Q Consensus       153 ~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s  232 (288)
                      .++.|+|++.             .++++|+.|++|++||++...   ..+..+.+|...|.+++|+|+.   ..+|++++
T Consensus       281 ~~i~~~p~~~-------------~~l~tg~~dg~v~vwd~~~~~---~~~~~~~~h~~~v~~i~~sp~~---~~~l~s~~  341 (430)
T 2xyi_A          281 NCLSFNPYSE-------------FILATGSADKTVALWDLRNLK---LKLHSFESHKDEIFQVQWSPHN---ETILASSG  341 (430)
T ss_dssp             EEEEECSSCT-------------TEEEEEETTSEEEEEETTCTT---SCSEEEECCSSCEEEEEECSSC---TTEEEEEE
T ss_pred             EEEEeCCCCC-------------CEEEEEeCCCeEEEEeCCCCC---CCeEEeecCCCCEEEEEECCCC---CCEEEEEe
Confidence            9999999873             478999999999999998632   3455677899999999999985   35799999


Q ss_pred             CCCcEEEEEeecCCCc-----------ccceEeeccccCeEEEEeecCCC-EEEEEeCCCcEEEeEc
Q 036510          233 EDGKVIIWTVAREGDQ-----------WEGKVLHDFKTPVYRVSWSLTGN-ILAVADGNNNVTLWEE  287 (288)
Q Consensus       233 ~D~~i~iw~~~~~~~~-----------~~~~~~~~~~~~i~~~~~spdg~-~l~s~~~d~~v~~w~~  287 (288)
                      .|+.|++||+......           .......+|...|.+++|+|+++ +|++++.|++|+||++
T Consensus       342 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~  408 (430)
T 2xyi_A          342 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM  408 (430)
T ss_dssp             TTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred             CCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence            9999999999863211           11122345667899999999999 9999999999999995

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.7e-35  Score=252.40  Aligned_cols=241  Identities=17%  Similarity=0.257  Sum_probs=204.1

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCC
Q 036510            9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN   88 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~   88 (288)
                      +|...|.+++|+|++++|++++.|++|++||+..........+.+|...|.+++|+++  +++|++++.|+.|++||+.+
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~v~~~d~~~  172 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD--SKVCFSCCSDGNIAVWDLHN  172 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTT--SSEEEEEETTSCEEEEETTT
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCC--CCEEEEEeCCCcEEEEeCCC
Confidence            7899999999999999999999999999999976544467788899999999999864  88999999999999999976


Q ss_pred             CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceec
Q 036510           89 SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG  168 (288)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~  168 (288)
                      +.   ....+..|...|.+++|+|+  +.++++++.|+.|++||++.+....    ...+...+.++.|+|++       
T Consensus       173 ~~---~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~----~~~~~~~v~~~~~s~~~-------  236 (337)
T 1gxr_A          173 QT---LVRQFQGHTDGASCIDISND--GTKLWTGGLDNTVRSWDLREGRQLQ----QHDFTSQIFSLGYCPTG-------  236 (337)
T ss_dssp             TE---EEEEECCCSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEECTTS-------
T ss_pred             Cc---eeeeeecccCceEEEEECCC--CCEEEEEecCCcEEEEECCCCceEe----eecCCCceEEEEECCCC-------
Confidence            54   44567789999999999997  5678999999999999998653221    12467789999999987       


Q ss_pred             ccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCc
Q 036510          169 SGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ  248 (288)
Q Consensus       169 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~  248 (288)
                             .++++++.|+.|++||+.++.     ...+..|...|.++.|+|++    .+|++++.|+.|++|++..... 
T Consensus       237 -------~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~~~~~~~~~~-  299 (337)
T 1gxr_A          237 -------EWLAVGMESSNVEVLHVNKPD-----KYQLHLHESCVLSLKFAYCG----KWFVSTGKDNLLNAWRTPYGAS-  299 (337)
T ss_dssp             -------SEEEEEETTSCEEEEETTSSC-----EEEECCCSSCEEEEEECTTS----SEEEEEETTSEEEEEETTTCCE-
T ss_pred             -------CEEEEEcCCCcEEEEECCCCC-----eEEEcCCccceeEEEECCCC----CEEEEecCCCcEEEEECCCCeE-
Confidence                   789999999999999997752     23457799999999999984    6899999999999999875421 


Q ss_pred             ccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          249 WEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       249 ~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                         .....+..+|.+++|+|+|++|++++.|+.|++|++
T Consensus       300 ---~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          300 ---IFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             ---EEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             ---EEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence               122346788999999999999999999999999995

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-37  Score=281.99  Aligned_cols=249  Identities=13%  Similarity=0.095  Sum_probs=193.5

Q ss_pred             ccccccceEEEEEcCC------CCEEEEeeCCCcEEEEEeCCCCc---------eeeEEEeccccCeEEEEecCCCCCCE
Q 036510            7 ETGHEDTVHDVAMDYY------GKRLATASSDYSIKIIGVGNNTS---------QHLAKLSGHKGAVWEVAWAHPKFGSI   71 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~------g~~l~s~~~d~~i~lwd~~~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~   71 (288)
                      +.+|.+.|.+++|+|+      +.+|||++.|++|+|||+..+..         .....+.+|...|++++|+++   ..
T Consensus       203 l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~---~~  279 (524)
T 2j04_B          203 IVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP---TT  279 (524)
T ss_dssp             EEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS---SE
T ss_pred             EEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC---Ce
Confidence            3467899999999996      57999999999999999864321         123578899999999999753   58


Q ss_pred             EEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEE--EeccCCCC-eEEEEEeCCCcEEEEeecCCCCeeeEEeeccC
Q 036510           72 LASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSI--DWAPHELG-LCLACGSSDGNISVFTARADGGWDTSRIDQAH  148 (288)
Q Consensus        72 l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l--~~~p~~~~-~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~  148 (288)
                      |++|+.||+|++||+.++..  ....+.+|...|+++  .|+|+  + .++++|+.|++|++||++......   ...+|
T Consensus       280 lasgs~DgtV~lWD~~~~~~--~~~~~~~H~~~V~sv~~~~s~~--g~~~laS~S~D~tvklWD~~~~~~~~---~~~~~  352 (524)
T 2j04_B          280 VVCGFKNGFVAEFDLTDPEV--PSFYDQVHDSYILSVSTAYSDF--EDTVVSTVAVDGYFYIFNPKDIATTK---TTVSR  352 (524)
T ss_dssp             EEEEETTSEEEEEETTBCSS--CSEEEECSSSCEEEEEEECCTT--SCCEEEEEETTSEEEEECGGGHHHHC---EEEEE
T ss_pred             EEEEeCCCEEEEEECCCCCC--ceEEeecccccEEEEEEEcCCC--CCeEEEEeccCCeEEEEECCCCCccc---ccccc
Confidence            99999999999999976532  234577899999999  46665  4 689999999999999998643221   22234


Q ss_pred             C--CCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCc
Q 036510          149 P--VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKS  226 (288)
Q Consensus       149 ~--~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~  226 (288)
                      .  ..|.+++|+|++              ..+++++.|++|++||++.+    .++..+.+|.+.|++|+|+|++    .
T Consensus       353 ~~~~~v~~v~fsp~~--------------~~l~s~~~d~tv~lwd~~~~----~~~~~l~gH~~~V~sva~Sp~g----~  410 (524)
T 2j04_B          353 FRGSNLVPVVYCPQI--------------YSYIYSDGASSLRAVPSRAA----FAVHPLVSRETTITAIGVSRLH----P  410 (524)
T ss_dssp             CSCCSCCCEEEETTT--------------TEEEEECSSSEEEEEETTCT----TCCEEEEECSSCEEEEECCSSC----C
T ss_pred             cccCcccceEeCCCc--------------CeEEEeCCCCcEEEEECccc----ccceeeecCCCceEEEEeCCCC----C
Confidence            3  247899999987              67899999999999999876    3445678899999999999984    6


Q ss_pred             EEEEEeCCCcEEEEEeecCCCc-----------------------------------------ccceEeeccccCeEEEE
Q 036510          227 TIASASEDGKVIIWTVAREGDQ-----------------------------------------WEGKVLHDFKTPVYRVS  265 (288)
Q Consensus       227 ~l~s~s~D~~i~iw~~~~~~~~-----------------------------------------~~~~~~~~~~~~i~~~~  265 (288)
                      +|++|+.|++|++||+......                                         .....+.+|..+|.+|+
T Consensus       411 ~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Va  490 (524)
T 2j04_B          411 MVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTK  490 (524)
T ss_dssp             BCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEE
T ss_pred             eEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEE
Confidence            8999999999999986431000                                         00011234567899999


Q ss_pred             eecCCC---EEEEEeCCCcEEEeEc
Q 036510          266 WSLTGN---ILAVADGNNNVTLWEE  287 (288)
Q Consensus       266 ~spdg~---~l~s~~~d~~v~~w~~  287 (288)
                      |||+++   .+|+|+.||+||||++
T Consensus       491 fsp~~~~~~~lAsg~~~g~vrlw~l  515 (524)
T 2j04_B          491 WNETSAGGKCYAFSNSAGLLTLEYL  515 (524)
T ss_dssp             ECCSTTTTTEEEEECTTSEEEEEEC
T ss_pred             CCCCCCccHHHHhhccCceEEEEEc
Confidence            999965   9999999999999995

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.9e-35  Score=262.91  Aligned_cols=245  Identities=23%  Similarity=0.460  Sum_probs=201.1

Q ss_pred             cccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecC
Q 036510            8 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEG   87 (288)
Q Consensus         8 ~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~   87 (288)
                      .+|.+.|++|+|+|+|++|++|+.|++|+|||+..  ++.+..+.+|...+.++.|+    +.+|++|+.|+.+++||..
T Consensus       144 ~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~--~~~~~~~~~h~~~v~~~s~~----~~~l~sgs~d~~i~~~d~~  217 (420)
T 4gga_A          144 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ--QKRLRNMTSHSARVGSLSWN----SYILSSGSRSGHIHHHDVR  217 (420)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETT
T ss_pred             cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC--CcEEEEEeCCCCceEEEeeC----CCEEEEEeCCCceeEeeec
Confidence            47888999999999999999999999999999854  47789999999999999985    6799999999999999987


Q ss_pred             CCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCC-eeeEEeeccCCCCeeEEEeCCCCCCCce
Q 036510           88 NSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGG-WDTSRIDQAHPVGVTSVSWAPSTAPGAL  166 (288)
Q Consensus        88 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~v~~i~~~p~~~~~~~  166 (288)
                      ....  ....+.+|...+.++.|+|+  +.++++++.|+.+++|+...+.. .........|...|.++.|+|...    
T Consensus       218 ~~~~--~~~~~~~h~~~~~~~~~~~~--g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~----  289 (420)
T 4gga_A          218 VAEH--HVATLSGHSQEVCGLRWAPD--GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS----  289 (420)
T ss_dssp             SSSC--EEEEEECCSSCEEEEEECTT--SSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCT----
T ss_pred             ccce--eeEEecccccceeeeeecCC--CCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcc----
Confidence            6543  34567889999999999998  67899999999999999976532 122344567888999999999874    


Q ss_pred             ecccccCCCceeEE--eecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEe--CCCcEEEEEe
Q 036510          167 VGSGFLDPVQKLCS--GGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASAS--EDGKVIIWTV  242 (288)
Q Consensus       167 ~~~~~~~~~~~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s--~D~~i~iw~~  242 (288)
                               .++++  |+.|++|++||+.++.    +...+..| ..|.++.|+|+.    ..+++++  .|+.|+|||+
T Consensus       290 ---------~~la~~~gs~D~~I~iwd~~t~~----~~~~~~~~-~~v~~~~~~~~~----~~lv~~sg~~d~~I~iwd~  351 (420)
T 4gga_A          290 ---------NVLATGGGTSDRHIRIWNVCSGA----CLSAVDAH-SQVCSILWSPHY----KELISGHGFAQNQLVIWKY  351 (420)
T ss_dssp             ---------TEEEEEECTTTCEEEEEETTTTE----EEEEEECS-SCEEEEEEETTT----TEEEEEECTTTCCEEEEET
T ss_pred             ---------cEEEEEeecCCCEEEEEeCCccc----cceeeccc-cceeeeeecCCC----CeEEEEEecCCCEEEEEEC
Confidence                     45554  5679999999998873    34444444 458899999984    4566554  7999999998


Q ss_pred             ecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          243 AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ....   ....+.+|.+.|++++|+|||++|++|+.|++|+|||+
T Consensus       352 ~~~~---~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv  393 (420)
T 4gga_A          352 PTMA---KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC  393 (420)
T ss_dssp             TTCC---EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred             CCCc---EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence            7532   23456778899999999999999999999999999985

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.3e-36  Score=264.19  Aligned_cols=259  Identities=16%  Similarity=0.180  Sum_probs=194.4

Q ss_pred             ccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCC-ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510            5 KIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNT-SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVII   83 (288)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i   83 (288)
                      ..+.+|...|.+++|+|+|++|++++.|++|++||+.... ......+.+|...|++++|+++  +.+|++++.|++|++
T Consensus        49 ~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i  126 (377)
T 3dwl_C           49 RTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPN--EDKFAVGSGARVISV  126 (377)
T ss_dssp             CCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTT--SSCCEEEESSSCEEE
T ss_pred             EEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCC--CCEEEEEecCCeEEE
Confidence            4566899999999999999999999999999999986543 2356778899999999999864  889999999999999


Q ss_pred             eecCCCCceEEeEEeec-CCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCC--------------C-eeeEEeecc
Q 036510           84 WKEGNSNEWIKDHVFED-HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADG--------------G-WDTSRIDQA  147 (288)
Q Consensus        84 wd~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~--------------~-~~~~~~~~~  147 (288)
                      ||+.....+.....+.. |...|++++|+|+  +.++++|+.|+.|++||++...              . ....... +
T Consensus       127 wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  203 (377)
T 3dwl_C          127 CYFEQENDWWVSKHLKRPLRSTILSLDWHPN--NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-P  203 (377)
T ss_dssp             CCC-----CCCCEEECSSCCSCEEEEEECTT--SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-C
T ss_pred             EEECCcccceeeeEeecccCCCeEEEEEcCC--CCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-c
Confidence            99977653333455666 9999999999997  6789999999999999986321              0 1112223 7


Q ss_pred             CCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcE
Q 036510          148 HPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKST  227 (288)
Q Consensus       148 ~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~  227 (288)
                      |...|.++.|+|++              ++|++++.|++|++||+.++......+..+.+|...|.+++|+|++    .+
T Consensus       204 ~~~~v~~~~~sp~~--------------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~  265 (377)
T 3dwl_C          204 SGGWVHAVGFSPSG--------------NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES----AI  265 (377)
T ss_dssp             CSSSEEEEEECTTS--------------SCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT----EE
T ss_pred             CCceEEEEEECCCC--------------CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC----CE
Confidence            88899999999987              7899999999999999998753333466788999999999999984    67


Q ss_pred             EEEEeCCCcEEEEEeecCCCc----cc------------------c-----------e----------------Eeeccc
Q 036510          228 IASASEDGKVIIWTVAREGDQ----WE------------------G-----------K----------------VLHDFK  258 (288)
Q Consensus       228 l~s~s~D~~i~iw~~~~~~~~----~~------------------~-----------~----------------~~~~~~  258 (288)
                      |++|+.|+.+ +|+.......    ..                  .           .                ....|.
T Consensus       266 l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~  344 (377)
T 3dwl_C          266 VAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQ  344 (377)
T ss_dssp             EEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCS
T ss_pred             EEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCcccc
Confidence            8888777666 6655421100    00                  0           0                001267


Q ss_pred             cCeEEEEeecCC-C---EEEEEeCCCcEEEeEc
Q 036510          259 TPVYRVSWSLTG-N---ILAVADGNNNVTLWEE  287 (288)
Q Consensus       259 ~~i~~~~~spdg-~---~l~s~~~d~~v~~w~~  287 (288)
                      +.|+++++.++. .   .|++|+.||+|+|||+
T Consensus       345 ~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          345 NMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             SCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             ceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence            889999976654 4   6999999999999985

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-36  Score=267.82  Aligned_cols=253  Identities=15%  Similarity=0.263  Sum_probs=206.4

Q ss_pred             cccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCC--CceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            8 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNN--TSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         8 ~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      ..|...|.+++|+|++++|++|+.|++|++|++...  ..+.+..+.+|...|.+++|+++ .+.+|++++.|++|++||
T Consensus        64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd  142 (416)
T 2pm9_A           64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAK-QDNVLASGGNNGEIFIWD  142 (416)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSS-STTBEEEECSSSCEEBCB
T ss_pred             EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCC-CCCEEEEEcCCCeEEEEE
Confidence            478999999999999999999999999999998641  12467888999999999999864 378999999999999999


Q ss_pred             cCCCC------ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccC------CCCee
Q 036510           86 EGNSN------EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAH------PVGVT  153 (288)
Q Consensus        86 ~~~~~------~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~------~~~v~  153 (288)
                      +....      .......+..|...|.+++|+|++ +.++++++.|+.|++||++.+...   .....+      ...+.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~---~~~~~~~~~~~~~~~v~  218 (416)
T 2pm9_A          143 MNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEV---IHLSYTSPNSGIKQQLS  218 (416)
T ss_dssp             TTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEE---EEECCCCCSSCCCCCEE
T ss_pred             CCCCccccccccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcc---eEEeccccccccCCceE
Confidence            97654      222222345788999999999974 467899999999999999875322   222233      77899


Q ss_pred             EEEeCCCCCCCceecccccCCCceeEEeecCC---cEEEEEEeCCceeeeeeeccc-cCCcceEEEEecCCCCCCCcEEE
Q 036510          154 SVSWAPSTAPGALVGSGFLDPVQKLCSGGCDN---TVKVWKLYNGIWKMDCFPALQ-MHTDWVRDVAWAPNLGLPKSTIA  229 (288)
Q Consensus       154 ~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~~~~l~  229 (288)
                      ++.|+|++.             .++++++.|+   .|++||++++.   .....+. +|...|.+++|+|+.   +.+|+
T Consensus       219 ~~~~~~~~~-------------~~l~~~~~d~~~~~i~~~d~~~~~---~~~~~~~~~~~~~v~~~~~s~~~---~~~l~  279 (416)
T 2pm9_A          219 VVEWHPKNS-------------TRVATATGSDNDPSILIWDLRNAN---TPLQTLNQGHQKGILSLDWCHQD---EHLLL  279 (416)
T ss_dssp             EEEECSSCT-------------TEEEEEECCSSSCCCCEEETTSTT---SCSBCCCSCCSSCEEEEEECSSC---SSCEE
T ss_pred             EEEECCCCC-------------CEEEEEECCCCCceEEEEeCCCCC---CCcEEeecCccCceeEEEeCCCC---CCeEE
Confidence            999999863             5799999998   99999998752   2344566 899999999999932   46899


Q ss_pred             EEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCC-CEEEEEeCCCcEEEeEc
Q 036510          230 SASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTG-NILAVADGNNNVTLWEE  287 (288)
Q Consensus       230 s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg-~~l~s~~~d~~v~~w~~  287 (288)
                      +++.|++|++||++...   ....+..|..+|.+++|+|++ ++|++++.|++|+||++
T Consensus       280 s~~~dg~v~~wd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~  335 (416)
T 2pm9_A          280 SSGRDNTVLLWNPESAE---QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTL  335 (416)
T ss_dssp             EEESSSEEEEECSSSCC---EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEES
T ss_pred             EEeCCCCEEEeeCCCCc---cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEc
Confidence            99999999999987542   234456677899999999999 89999999999999995

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.8e-35  Score=257.31  Aligned_cols=255  Identities=18%  Similarity=0.147  Sum_probs=203.2

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      .+.+|...|.+++|+|++++|++++.|++|++||+..........+.+|...|.+++|+++  +.+|++++.|+.|++||
T Consensus        47 ~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~i~d  124 (372)
T 1k8k_C           47 ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN--EKKFAVGSGSRVISICY  124 (372)
T ss_dssp             EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTT--SSEEEEEETTSSEEEEE
T ss_pred             eecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCC--CCEEEEEeCCCEEEEEE
Confidence            4568999999999999999999999999999999965433334455789999999999864  89999999999999999


Q ss_pred             cCCCCceEEeEE-eecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCC---------------CeeeEEeeccCC
Q 036510           86 EGNSNEWIKDHV-FEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADG---------------GWDTSRIDQAHP  149 (288)
Q Consensus        86 ~~~~~~~~~~~~-~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~---------------~~~~~~~~~~~~  149 (288)
                      +.....+..... ...|...|.+++|+|+  +.++++|+.|+.|++||++...               ..........|.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (372)
T 1k8k_C          125 FEQENDWWVCKHIKKPIRSTVLSLDWHPN--SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC  202 (372)
T ss_dssp             EETTTTEEEEEEECTTCCSCEEEEEECTT--SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS
T ss_pred             ecCCCcceeeeeeecccCCCeeEEEEcCC--CCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCC
Confidence            987654322233 3568899999999997  6689999999999999975210               012234455788


Q ss_pred             CCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEE
Q 036510          150 VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIA  229 (288)
Q Consensus       150 ~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~  229 (288)
                      ..+.++.|+|++              .+|++++.|+.|++||++++    +++..+..|...|.+++|+|++    .+|+
T Consensus       203 ~~v~~~~~~~~~--------------~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~----~~l~  260 (372)
T 1k8k_C          203 GWVHGVCFSANG--------------SRVAWVSHDSTVCLADADKK----MAVATLASETLPLLAVTFITES----SLVA  260 (372)
T ss_dssp             SCEEEEEECSSS--------------SEEEEEETTTEEEEEEGGGT----TEEEEEECSSCCEEEEEEEETT----EEEE
T ss_pred             CeEEEEEECCCC--------------CEEEEEeCCCEEEEEECCCC----ceeEEEccCCCCeEEEEEecCC----CEEE
Confidence            899999999987              78999999999999999876    3455677899899999999974    5666


Q ss_pred             EEeCCCcEEEEEeecCCCc-------------------------------cc-------ceEeeccccCeEEEEee-cCC
Q 036510          230 SASEDGKVIIWTVAREGDQ-------------------------------WE-------GKVLHDFKTPVYRVSWS-LTG  270 (288)
Q Consensus       230 s~s~D~~i~iw~~~~~~~~-------------------------------~~-------~~~~~~~~~~i~~~~~s-pdg  270 (288)
                      +| .|+.|++|++......                               ..       .....+|..+|++++|+ ++|
T Consensus       261 ~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g  339 (372)
T 1k8k_C          261 AG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGK  339 (372)
T ss_dssp             EE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTT
T ss_pred             EE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCC
Confidence            66 9999999999861000                               00       11223677899999966 677


Q ss_pred             ---CEEEEEeCCCcEEEeEc
Q 036510          271 ---NILAVADGNNNVTLWEE  287 (288)
Q Consensus       271 ---~~l~s~~~d~~v~~w~~  287 (288)
                         ++|++|+.||+|+|||+
T Consensus       340 ~~~~~l~s~~~Dg~i~~W~~  359 (372)
T 1k8k_C          340 AKCSQFCTTGMDGGMSIWDV  359 (372)
T ss_dssp             TSCSEEEEEETTSEEEEEEH
T ss_pred             cceeeEEEecCCCceEEEEe
Confidence               99999999999999995

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.2e-36  Score=262.12  Aligned_cols=253  Identities=19%  Similarity=0.260  Sum_probs=203.0

Q ss_pred             ccccceEEEEEcCC----CCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510            9 GHEDTVHDVAMDYY----GKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW   84 (288)
Q Consensus         9 ~h~~~v~~~~~s~~----g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw   84 (288)
                      .|...|.+++|+|+    |++|++|+.|++|++||+..  .+.+..+.+|...|.+++|++. ++.+|++++.|++|++|
T Consensus        67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~--~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iw  143 (366)
T 3k26_A           67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT--MQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLW  143 (366)
T ss_dssp             CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT--CCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEE
T ss_pred             CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh--ceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEE
Confidence            36788999999998    67999999999999999854  3668889999999999999862 48899999999999999


Q ss_pred             ecCCCCceEEeEEe---ecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCee---------------------
Q 036510           85 KEGNSNEWIKDHVF---EDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWD---------------------  140 (288)
Q Consensus        85 d~~~~~~~~~~~~~---~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~---------------------  140 (288)
                      |+.++.   ....+   ..|...|.+++|+|+  +.++++++.|+.|++||++......                     
T Consensus       144 d~~~~~---~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (366)
T 3k26_A          144 NIQTDT---LVAIFGGVEGHRDEVLSADYDLL--GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQK  218 (366)
T ss_dssp             ETTTTE---EEEEECSTTSCSSCEEEEEECTT--SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEE
T ss_pred             EeecCe---EEEEecccccccCceeEEEECCC--CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCccccccee
Confidence            998664   33344   579999999999997  6789999999999999987532110                     


Q ss_pred             ----eEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCce----------eeeeeeccc
Q 036510          141 ----TSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIW----------KMDCFPALQ  206 (288)
Q Consensus       141 ----~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----------~~~~~~~~~  206 (288)
                          .......|...|.++.|+  +              +++++++.|+.|++||+.+...          ....+..+.
T Consensus       219 ~~~~~~~~~~~~~~~v~~~~~~--~--------------~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  282 (366)
T 3k26_A          219 IHFPDFSTRDIHRNYVDCVRWL--G--------------DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD  282 (366)
T ss_dssp             ECCCSEEECSSCSSCCCEEEEE--T--------------TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE
T ss_pred             eccCccccccCCcceEEEEEEc--C--------------CEEEEEecCCEEEEEeCCCccccccccccCCcchheecccc
Confidence                011223488889999987  2              5799999999999999976532          113455677


Q ss_pred             cCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcc-cceEeecc--ccCeEEEEeecCCCEEEEEeCCCcEE
Q 036510          207 MHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQW-EGKVLHDF--KTPVYRVSWSLTGNILAVADGNNNVT  283 (288)
Q Consensus       207 ~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~-~~~~~~~~--~~~i~~~~~spdg~~l~s~~~d~~v~  283 (288)
                      +|...|.+++|+|+.  .+.+|++|+.|+.|++||+....... ....+..+  ..+|.+++|+|+|++|++++.|+.|+
T Consensus       283 ~~~~~v~~~~~s~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~  360 (366)
T 3k26_A          283 YSQCDIWYMRFSMDF--WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIW  360 (366)
T ss_dssp             CSSCCSSCCCCEECT--TSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             ccCCcEEEEEEcCCC--CCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEE
Confidence            899999999999972  13789999999999999997643211 11234444  68999999999999999999999999


Q ss_pred             EeEc
Q 036510          284 LWEE  287 (288)
Q Consensus       284 ~w~~  287 (288)
                      |||+
T Consensus       361 iwd~  364 (366)
T 3k26_A          361 RWDR  364 (366)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            9996

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-37  Score=280.56  Aligned_cols=234  Identities=12%  Similarity=0.147  Sum_probs=177.6

Q ss_pred             EEEEeeCCCcEEEEEeCCCCce--eeEEEeccccCeEEEEecCC----CCCCEEEEeeCCCcEEEeecCCCCce------
Q 036510           25 RLATASSDYSIKIIGVGNNTSQ--HLAKLSGHKGAVWEVAWAHP----KFGSILASCSFDGTVIIWKEGNSNEW------   92 (288)
Q Consensus        25 ~l~s~~~d~~i~lwd~~~~~~~--~~~~~~~h~~~v~~~~~~~~----~~~~~l~s~s~d~~v~iwd~~~~~~~------   92 (288)
                      .|+|++.|++|+||+++.....  ...++.+|.+.|+.++|+|+    +++.+|+++|.|++|+|||+..+...      
T Consensus       175 ~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~  254 (524)
T 2j04_B          175 MFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM  254 (524)
T ss_dssp             -------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC
T ss_pred             hhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee
Confidence            4455678899999998654321  13456778899999999874    23679999999999999998654311      


Q ss_pred             --EEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEE--EeCCCCCCCceec
Q 036510           93 --IKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSV--SWAPSTAPGALVG  168 (288)
Q Consensus        93 --~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i--~~~p~~~~~~~~~  168 (288)
                        .....+.+|...|++++|+|+  + .+++|+.||+|++||++.+..  +.....+|...|.++  .|+|++.      
T Consensus       255 ~~~p~~~l~~h~~~v~sv~~s~~--~-~lasgs~DgtV~lWD~~~~~~--~~~~~~~H~~~V~sv~~~~s~~g~------  323 (524)
T 2j04_B          255 CEKPSLTLSLADSLITTFDFLSP--T-TVVCGFKNGFVAEFDLTDPEV--PSFYDQVHDSYILSVSTAYSDFED------  323 (524)
T ss_dssp             CCSCSEEECCTTTCEEEEEESSS--S-EEEEEETTSEEEEEETTBCSS--CSEEEECSSSCEEEEEEECCTTSC------
T ss_pred             ecCceEEEEcCCCCEEEEEecCC--C-eEEEEeCCCEEEEEECCCCCC--ceEEeecccccEEEEEEEcCCCCC------
Confidence              012356789999999999985  3 699999999999999986432  223456899999999  5666531      


Q ss_pred             ccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCc--ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCC
Q 036510          169 SGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTD--WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG  246 (288)
Q Consensus       169 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~--~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~  246 (288)
                             ++|+|++.|++|+|||++++.    +...+.+|..  .|.+|+|+|++    ..||+++.|++|++||++...
T Consensus       324 -------~~laS~S~D~tvklWD~~~~~----~~~~~~~~~~~~~v~~v~fsp~~----~~l~s~~~d~tv~lwd~~~~~  388 (524)
T 2j04_B          324 -------TVVSTVAVDGYFYIFNPKDIA----TTKTTVSRFRGSNLVPVVYCPQI----YSYIYSDGASSLRAVPSRAAF  388 (524)
T ss_dssp             -------CEEEEEETTSEEEEECGGGHH----HHCEEEEECSCCSCCCEEEETTT----TEEEEECSSSEEEEEETTCTT
T ss_pred             -------eEEEEeccCCeEEEEECCCCC----cccccccccccCcccceEeCCCc----CeEEEeCCCCcEEEEECcccc
Confidence                   579999999999999997652    3334455643  48899999974    579999999999999987532


Q ss_pred             CcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          247 DQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       247 ~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                         ....+.+|.++|++++|||+|++|++|+.|++|+|||.
T Consensus       389 ---~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~  426 (524)
T 2j04_B          389 ---AVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNA  426 (524)
T ss_dssp             ---CCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred             ---cceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence               12345678899999999999999999999999999984

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.4e-35  Score=254.87  Aligned_cols=255  Identities=15%  Similarity=0.176  Sum_probs=199.4

Q ss_pred             cccccceEEEEEcCC---CCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecC----CCCCCEEEEeeCCCc
Q 036510            8 TGHEDTVHDVAMDYY---GKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH----PKFGSILASCSFDGT   80 (288)
Q Consensus         8 ~~h~~~v~~~~~s~~---g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~~~l~s~s~d~~   80 (288)
                      .+|...|.+++|+|+   |++|++|+.|++|++||+.... ..+..+.+|...|.++.|.+    .+++.+|++++.|++
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~  140 (357)
T 3i2n_A           62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE-MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGT  140 (357)
T ss_dssp             EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS-SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSC
T ss_pred             ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC-ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCe
Confidence            379999999999998   7999999999999999986432 26788899999999997642    235889999999999


Q ss_pred             EEEeecCCCCceEEeEEeecCCC----ceeEEE----eccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCe
Q 036510           81 VIIWKEGNSNEWIKDHVFEDHKS----SVNSID----WAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGV  152 (288)
Q Consensus        81 v~iwd~~~~~~~~~~~~~~~h~~----~v~~l~----~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v  152 (288)
                      |++||+......  ...+..|..    .+.++.    |+|+  +.++++|+.|+.|++||++....    .....|...|
T Consensus       141 i~vwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~v  212 (357)
T 3i2n_A          141 VKVWDPRQKDDP--VANMEPVQGENKRDCWTVAFGNAYNQE--ERVVCAGYDNGDIKLFDLRNMAL----RWETNIKNGV  212 (357)
T ss_dssp             EEEECTTSCSSC--SEEECCCTTSCCCCEEEEEEECCCC-C--CCEEEEEETTSEEEEEETTTTEE----EEEEECSSCE
T ss_pred             EEEEeCCCCCCc--ceeccccCCCCCCceEEEEEEeccCCC--CCEEEEEccCCeEEEEECccCce----eeecCCCCce
Confidence            999999876421  233444433    799998    5666  67899999999999999986532    2335678899


Q ss_pred             eEEEeCC---CCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeee-eeccccCCcceEEEEecCCCCCCCcEE
Q 036510          153 TSVSWAP---STAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDC-FPALQMHTDWVRDVAWAPNLGLPKSTI  228 (288)
Q Consensus       153 ~~i~~~p---~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~h~~~V~~v~~sp~~~~~~~~l  228 (288)
                      .++.|+|   ++              ..|++++.|+.|++||++++...... ...+.+|...|.++.|+|++   ..+|
T Consensus       213 ~~~~~~~~~~~~--------------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l  275 (357)
T 3i2n_A          213 CSLEFDRKDISM--------------NKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQN---RELF  275 (357)
T ss_dssp             EEEEESCSSSSC--------------CEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTE---EEEE
T ss_pred             EEEEcCCCCCCC--------------CEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCC---CcEE
Confidence            9999999   55              78999999999999999864211010 11334899999999999974   2379


Q ss_pred             EEEeCCCcEEEEEeecCCCc----------------ccceEeeccccCeEEEEeecCCCEEE-EEeCCCcEEEeEcC
Q 036510          229 ASASEDGKVIIWTVAREGDQ----------------WEGKVLHDFKTPVYRVSWSLTGNILA-VADGNNNVTLWEEA  288 (288)
Q Consensus       229 ~s~s~D~~i~iw~~~~~~~~----------------~~~~~~~~~~~~i~~~~~spdg~~l~-s~~~d~~v~~w~~~  288 (288)
                      ++++.|+.|++||++.....                .....+..|..+|.+++|+|+|++|+ +++.|+.|+|||+.
T Consensus       276 ~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~  352 (357)
T 3i2n_A          276 LTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVT  352 (357)
T ss_dssp             EEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             EEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence            99999999999999854321                11233456778999999999999998 79999999999963

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=9.6e-35  Score=255.34  Aligned_cols=259  Identities=18%  Similarity=0.279  Sum_probs=203.3

Q ss_pred             CccccccccceEEEEEcC-CCCEEEEeeCCCcEEEEEeCCCCceeeEEE-----------eccccCeEEEEecCCCCCCE
Q 036510            4 QKIETGHEDTVHDVAMDY-YGKRLATASSDYSIKIIGVGNNTSQHLAKL-----------SGHKGAVWEVAWAHPKFGSI   71 (288)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~-~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~-----------~~h~~~v~~~~~~~~~~~~~   71 (288)
                      ..++.+|.+.|.+++|+| ++++|++|+.|++|++||+...........           .+|...|.+++|+++ ++.+
T Consensus        36 ~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~  114 (408)
T 4a11_B           36 RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH-DTGM  114 (408)
T ss_dssp             EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT-CTTC
T ss_pred             eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccC-CCcE
Confidence            446678999999999999 999999999999999999865432211111           259999999999863 4789


Q ss_pred             EEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCC-CCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCC
Q 036510           72 LASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHE-LGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV  150 (288)
Q Consensus        72 l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~  150 (288)
                      |++++.|+.|++||+.++.   ....+. +...+.++.|+|.. .+.++++|+.|+.|++||++.+...   .....|..
T Consensus       115 l~s~~~d~~i~iwd~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~---~~~~~~~~  187 (408)
T 4a11_B          115 FTSSSFDKTLKVWDTNTLQ---TADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS---HILQGHRQ  187 (408)
T ss_dssp             EEEEETTSEEEEEETTTTE---EEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC---EEECCCCS
T ss_pred             EEEEeCCCeEEEeeCCCCc---cceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee---eeecCCCC
Confidence            9999999999999997654   233333 67789999999864 2447999999999999999876432   34567889


Q ss_pred             CeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeee------------eeeccccCCcceEEEEec
Q 036510          151 GVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMD------------CFPALQMHTDWVRDVAWA  218 (288)
Q Consensus       151 ~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~------------~~~~~~~h~~~V~~v~~s  218 (288)
                      .|.++.|+|++.             .+|++++.|+.|++||++.+.....            ......+|...|.+++|+
T Consensus       188 ~v~~~~~~~~~~-------------~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  254 (408)
T 4a11_B          188 EILAVSWSPRYD-------------YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT  254 (408)
T ss_dssp             CEEEEEECSSCT-------------TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred             cEEEEEECCCCC-------------cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc
Confidence            999999999872             3689999999999999976531111            111225788999999999


Q ss_pred             CCCCCCCcEEEEEeCCCcEEEEEeecCCCc--------------------------------------------ccceEe
Q 036510          219 PNLGLPKSTIASASEDGKVIIWTVAREGDQ--------------------------------------------WEGKVL  254 (288)
Q Consensus       219 p~~~~~~~~l~s~s~D~~i~iw~~~~~~~~--------------------------------------------~~~~~~  254 (288)
                      |++    .+|++++.|+.|++||+......                                            .....+
T Consensus       255 ~~~----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~  330 (408)
T 4a11_B          255 SDG----LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML  330 (408)
T ss_dssp             TTS----SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE
T ss_pred             CCC----CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee
Confidence            974    78999999999999998753210                                            011223


Q ss_pred             eccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          255 HDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       255 ~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ..|..+|.+++|+|+|++|++|+.||.|++||.
T Consensus       331 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~  363 (408)
T 4a11_B          331 KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVP  363 (408)
T ss_dssp             CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred             ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeC
Confidence            456788999999999999999999999999995

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.4e-35  Score=258.44  Aligned_cols=243  Identities=23%  Similarity=0.410  Sum_probs=201.1

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCC
Q 036510            9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN   88 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~   88 (288)
                      .|...|.+++|+|+|++|++|+.|+.|++||+..  .+.+..+.+|...|.+++|.    +.+|++++.|+.|++||++.
T Consensus       132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~  205 (401)
T 4aez_A          132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES--QTKLRTMAGHQARVGCLSWN----RHVLSSGSRSGAIHHHDVRI  205 (401)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTS
T ss_pred             CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC--CeEEEEecCCCCceEEEEEC----CCEEEEEcCCCCEEEEeccc
Confidence            4889999999999999999999999999999854  36688889999999999994    57999999999999999975


Q ss_pred             CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceec
Q 036510           89 SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG  168 (288)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~  168 (288)
                      ...  ....+..|...|.+++|+|+  +.++++|+.|+.|++||++...   .......|...|.++.|+|++.      
T Consensus       206 ~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~d~~v~iwd~~~~~---~~~~~~~~~~~v~~~~~~p~~~------  272 (401)
T 4aez_A          206 ANH--QIGTLQGHSSEVCGLAWRSD--GLQLASGGNDNVVQIWDARSSI---PKFTKTNHNAAVKAVAWCPWQS------  272 (401)
T ss_dssp             SSC--EEEEEECCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTCSS---EEEEECCCSSCCCEEEECTTST------
T ss_pred             Ccc--eeeEEcCCCCCeeEEEEcCC--CCEEEEEeCCCeEEEccCCCCC---ccEEecCCcceEEEEEECCCCC------
Confidence            442  34567789999999999997  6789999999999999998643   2334567888999999999873      


Q ss_pred             ccccCCCceeEEee--cCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEE--EeCCCcEEEEEeec
Q 036510          169 SGFLDPVQKLCSGG--CDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIAS--ASEDGKVIIWTVAR  244 (288)
Q Consensus       169 ~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s--~s~D~~i~iw~~~~  244 (288)
                             .++++++  .|+.|++||+.++.    ++..+. |...|.+++|+|++    .+|++  |+.|+.|++|++..
T Consensus       273 -------~ll~~~~gs~d~~i~i~d~~~~~----~~~~~~-~~~~v~~~~~s~~~----~~l~~~~g~~dg~i~v~~~~~  336 (401)
T 4aez_A          273 -------NLLATGGGTMDKQIHFWNAATGA----RVNTVD-AGSQVTSLIWSPHS----KEIMSTHGFPDNNLSIWSYSS  336 (401)
T ss_dssp             -------TEEEEECCTTTCEEEEEETTTCC----EEEEEE-CSSCEEEEEECSSS----SEEEEEECTTTCEEEEEEEET
T ss_pred             -------CEEEEecCCCCCEEEEEECCCCC----EEEEEe-CCCcEEEEEECCCC----CeEEEEeecCCCcEEEEecCC
Confidence                   5677765  79999999998763    333333 56679999999984    57877  44899999999975


Q ss_pred             CCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          245 EGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       245 ~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      .. ......+..|...|.+++|+|||++|++++.|++|+||++
T Consensus       337 ~~-~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~  378 (401)
T 4aez_A          337 SG-LTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRV  378 (401)
T ss_dssp             TE-EEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEEC
T ss_pred             cc-ceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            32 1112234567789999999999999999999999999995

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=9.6e-36  Score=261.10  Aligned_cols=251  Identities=12%  Similarity=0.125  Sum_probs=194.4

Q ss_pred             cccccccceEEEEEcCCC-CEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510            6 IETGHEDTVHDVAMDYYG-KRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW   84 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g-~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw   84 (288)
                      .+.+|++.|.+++|+|+| ++|++|+.|++|++||+..........+.+|...|.+++|+++ ++.+|++++.|++|++|
T Consensus        68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d~~i~iw  146 (383)
T 3ei3_B           68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF-NTNQLFVSSIRGATTLR  146 (383)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT-EEEEEEEEETTTEEEEE
T ss_pred             eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC-CCCEEEEEeCCCEEEEE
Confidence            456899999999999999 9999999999999999975543333344579999999999863 37899999999999999


Q ss_pred             ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510           85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG  164 (288)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~  164 (288)
                      |+.. ...........|...|.+++|+|+  +.++++|+.|+.|++||++ +.   ......+|...|.++.|+|++.  
T Consensus       147 d~~~-~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~-~~---~~~~~~~h~~~v~~~~~~~~~~--  217 (383)
T 3ei3_B          147 DFSG-SVIQVFAKTDSWDYWYCCVDVSVS--RQMLATGDSTGRLLLLGLD-GH---EIFKEKLHKAKVTHAEFNPRCD--  217 (383)
T ss_dssp             ETTS-CEEEEEECCCCSSCCEEEEEEETT--TTEEEEEETTSEEEEEETT-SC---EEEEEECSSSCEEEEEECSSCT--
T ss_pred             ECCC-CceEEEeccCCCCCCeEEEEECCC--CCEEEEECCCCCEEEEECC-CC---EEEEeccCCCcEEEEEECCCCC--
Confidence            9974 322111112234578999999998  5689999999999999984 22   2345567999999999999872  


Q ss_pred             ceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecC-CCCCCCcEEEEEeCCCcEEEEEee
Q 036510          165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAP-NLGLPKSTIASASEDGKVIIWTVA  243 (288)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~~~~l~s~s~D~~i~iw~~~  243 (288)
                                 .+|++++.|++|++||+++......++..+ +|...|.+++|+| +    +.+|++++.|+.|++||++
T Consensus       218 -----------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~----~~~l~~~~~d~~i~iwd~~  281 (383)
T 3ei3_B          218 -----------WLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTD----STKLLTTDQRNEIRVYSSY  281 (383)
T ss_dssp             -----------TEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTT----SCEEEEEESSSEEEEEETT
T ss_pred             -----------CEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCC----CCEEEEEcCCCcEEEEECC
Confidence                       389999999999999998732111333343 6999999999999 7    4789999999999999987


Q ss_pred             cCCCcccceEeecc-----------------ccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          244 REGDQWEGKVLHDF-----------------KTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       244 ~~~~~~~~~~~~~~-----------------~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      .....   ..+..+                 ...+..++|+|||++  +|+.|++|+|||+
T Consensus       282 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~  337 (383)
T 3ei3_B          282 DWSKP---DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDA  337 (383)
T ss_dssp             BTTSC---SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEET
T ss_pred             CCccc---cccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEec
Confidence            64321   111111                 134566788888877  7889999999995

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=7.3e-36  Score=266.37  Aligned_cols=256  Identities=13%  Similarity=0.208  Sum_probs=193.0

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCC---------ceeeEEEeccc------------cCeEEEEecCCC
Q 036510            9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNT---------SQHLAKLSGHK------------GAVWEVAWAHPK   67 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~---------~~~~~~~~~h~------------~~v~~~~~~~~~   67 (288)
                      .|.+.|.+++|+|+|++||+|+.|+.|+||++....         .+....+.+|.            ..|.+++|+++.
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            468999999999999999999999999999986432         12477889998            889999998753


Q ss_pred             CCCEEEEeeCCCcEEEeecCCCCce------------------------------------EEeEE-eecCCCceeEEEe
Q 036510           68 FGSILASCSFDGTVIIWKEGNSNEW------------------------------------IKDHV-FEDHKSSVNSIDW  110 (288)
Q Consensus        68 ~~~~l~s~s~d~~v~iwd~~~~~~~------------------------------------~~~~~-~~~h~~~v~~l~~  110 (288)
                      ...+|++++.|++|++|++......                                    ..... ..+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence            2279999999999999998642210                                    00112 3579999999999


Q ss_pred             ccCCCCeEEEEEeCCCcEEEEeecCCCC-eeeE----EeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCC
Q 036510          111 APHELGLCLACGSSDGNISVFTARADGG-WDTS----RIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDN  185 (288)
Q Consensus       111 ~p~~~~~~l~sg~~d~~i~i~d~~~~~~-~~~~----~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~  185 (288)
                      +|+  +.++++| .|+.|++||++.... ....    ....+|...|.++.|+|++.             ++|++|+.|+
T Consensus       186 ~~~--~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-------------~~l~s~~~dg  249 (447)
T 3dw8_B          186 NSD--YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC-------------NTFVYSSSKG  249 (447)
T ss_dssp             CTT--SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT-------------TEEEEEETTS
T ss_pred             cCC--CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC-------------cEEEEEeCCC
Confidence            997  6678888 799999999974321 1110    02457899999999999863             6799999999


Q ss_pred             cEEEEEEeCCceeeeeeeccccCCc------------ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceE
Q 036510          186 TVKVWKLYNGIWKMDCFPALQMHTD------------WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKV  253 (288)
Q Consensus       186 ~i~iwd~~~~~~~~~~~~~~~~h~~------------~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~  253 (288)
                      .|++||++++.........+.+|..            .|.+++|+|++    .+|++++. +.|++||++.....  ...
T Consensus       250 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g----~~l~~~~~-~~v~iwd~~~~~~~--~~~  322 (447)
T 3dw8_B          250 TIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG----RYMMTRDY-LSVKVWDLNMENRP--VET  322 (447)
T ss_dssp             CEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTS----SEEEEEES-SEEEEEETTCCSSC--SCC
T ss_pred             eEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCC----CEEEEeeC-CeEEEEeCCCCccc--cce
Confidence            9999999876321111345566665            89999999974    78999999 99999999752221  122


Q ss_pred             eecccc---------------CeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          254 LHDFKT---------------PVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       254 ~~~~~~---------------~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      +..|..               .+..++|+|+|++|++|+.|+.|+|||+
T Consensus       323 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~  371 (447)
T 3dw8_B          323 YQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDR  371 (447)
T ss_dssp             EESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEET
T ss_pred             eeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEc
Confidence            233321               1345999999999999999999999995

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=4.9e-35  Score=259.15  Aligned_cols=258  Identities=15%  Similarity=0.147  Sum_probs=201.4

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCc
Q 036510           12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNE   91 (288)
Q Consensus        12 ~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~   91 (288)
                      ..+....|+++|++|++|+.|++|++||+..  .+....+.+|...|.+++|+++  +.+|++++.|++|++||+.++. 
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~d~~i~iwd~~~~~-  172 (420)
T 3vl1_A           98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF--NLQREIDQAHVSEITKLKFFPS--GEALISSSQDMQLKIWSVKDGS-  172 (420)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSCEEEECTTS--CEEEEETTSSSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTCC-
T ss_pred             CceEEEEEecCCCEEEEEECCCCEEEEeCCC--cceeeecccccCccEEEEECCC--CCEEEEEeCCCeEEEEeCCCCc-
Confidence            3444456899999999999999999999853  3566677899999999999864  8899999999999999998765 


Q ss_pred             eEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCC-------C
Q 036510           92 WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAP-------G  164 (288)
Q Consensus        92 ~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~-------~  164 (288)
                        ....+.+|...|.+++|+|+  +.++++|+.|+.|++||++++...........|...+.++.|.|....       .
T Consensus       173 --~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  248 (420)
T 3vl1_A          173 --NPRTLIGHRATVTDIAIIDR--GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTS  248 (420)
T ss_dssp             --CCEEEECCSSCEEEEEEETT--TTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCC
T ss_pred             --CceEEcCCCCcEEEEEEcCC--CCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccC
Confidence              34567789999999999998  668899999999999999876433333233356778888888765432       2


Q ss_pred             ceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510          165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR  244 (288)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~  244 (288)
                      ......+..++++|++|+.|+.|++||++++..   .......|...|.+++|+|+.   ..+|++|+.|+.|++||++.
T Consensus       249 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~---~~~l~~g~~dg~i~vwd~~~  322 (420)
T 3vl1_A          249 KKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ---TIQLPSKFTCSCNSLTVDGNN---ANYIYAGYENGMLAQWDLRS  322 (420)
T ss_dssp             CCCTTCSSCTTEEEEEEETTSCEEEEETTTCCE---EEEECCTTSSCEEEEEECSSC---TTEEEEEETTSEEEEEETTC
T ss_pred             cccceEEcCCCCEEEEEcCCCeEEEEECCCCce---eEEcccccCCCceeEEEeCCC---CCEEEEEeCCCeEEEEEcCC
Confidence            223345556678999999999999999987632   222235688899999999984   23899999999999999976


Q ss_pred             CCCcccceEeec-cccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          245 EGDQWEGKVLHD-FKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       245 ~~~~~~~~~~~~-~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ...+  ...+.. +..+|.++ ++|++++|++++.|++|+||++
T Consensus       323 ~~~~--~~~~~~~~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~  363 (420)
T 3vl1_A          323 PECP--VGEFLINEGTPINNV-YFAAGALFVSSGFDTSIKLDII  363 (420)
T ss_dssp             TTSC--SEEEEESTTSCEEEE-EEETTEEEEEETTTEEEEEEEE
T ss_pred             CcCc--hhhhhccCCCCceEE-EeCCCCEEEEecCCccEEEEec
Confidence            4321  233333 45677777 4568899999999999999995

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.7e-34  Score=246.19  Aligned_cols=244  Identities=18%  Similarity=0.281  Sum_probs=202.4

Q ss_pred             cccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCC-ceeeEEEe--ccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510            8 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNT-SQHLAKLS--GHKGAVWEVAWAHPKFGSILASCSFDGTVIIW   84 (288)
Q Consensus         8 ~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~-~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw   84 (288)
                      .+|...|.+++|+|++++|++++ |++|++|++.... ...+..+.  +|...|.+++|+++  +++|++++.|+.|++|
T Consensus        48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~  124 (337)
T 1gxr_A           48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD--GCTLIVGGEASTLSIW  124 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT--SSEEEEEESSSEEEEE
T ss_pred             ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCC--CCEEEEEcCCCcEEEE
Confidence            47999999999999999999999 9999999986432 22344444  79999999999864  8899999999999999


Q ss_pred             ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510           85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG  164 (288)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~  164 (288)
                      |+.+... .....+..|...|.+++|+|+  +.++++++.|+.|++||++.+.   .......|...+.++.|+|++   
T Consensus       125 d~~~~~~-~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~v~~~d~~~~~---~~~~~~~~~~~i~~~~~~~~~---  195 (337)
T 1gxr_A          125 DLAAPTP-RIKAELTSSAPACYALAISPD--SKVCFSCCSDGNIAVWDLHNQT---LVRQFQGHTDGASCIDISNDG---  195 (337)
T ss_dssp             ECCCC---EEEEEEECSSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTTE---EEEEECCCSSCEEEEEECTTS---
T ss_pred             ECCCCCc-ceeeecccCCCceEEEEECCC--CCEEEEEeCCCcEEEEeCCCCc---eeeeeecccCceEEEEECCCC---
Confidence            9976542 234556789999999999997  6788999999999999998652   334556788999999999987   


Q ss_pred             ceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510          165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR  244 (288)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~  244 (288)
                                 ++|++++.|+.|++||++++.    .+.. ..|...|.+++|+|++    .+|++++.|+.|++||+..
T Consensus       196 -----------~~l~~~~~dg~i~~~d~~~~~----~~~~-~~~~~~v~~~~~s~~~----~~l~~~~~~~~i~~~~~~~  255 (337)
T 1gxr_A          196 -----------TKLWTGGLDNTVRSWDLREGR----QLQQ-HDFTSQIFSLGYCPTG----EWLAVGMESSNVEVLHVNK  255 (337)
T ss_dssp             -----------SEEEEEETTSEEEEEETTTTE----EEEE-EECSSCEEEEEECTTS----SEEEEEETTSCEEEEETTS
T ss_pred             -----------CEEEEEecCCcEEEEECCCCc----eEee-ecCCCceEEEEECCCC----CEEEEEcCCCcEEEEECCC
Confidence                       789999999999999998763    2222 2467789999999984    7899999999999999875


Q ss_pred             CCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          245 EGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       245 ~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ..    ...+..+..+|.+++|+|+|++|++++.|+.|++||.
T Consensus       256 ~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~  294 (337)
T 1gxr_A          256 PD----KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT  294 (337)
T ss_dssp             SC----EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CC----eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEEC
Confidence            42    2345667789999999999999999999999999995

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=5.4e-35  Score=258.86  Aligned_cols=251  Identities=19%  Similarity=0.277  Sum_probs=198.6

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      .+.+|.+.|.+++|+|++++|++|+.|++|++||+...  +.+..+.+|...|.+++|+++  +.+|++++.|++|++||
T Consensus       134 ~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~v~iwd  209 (420)
T 3vl1_A          134 IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG--SNPRTLIGHRATVTDIAIIDR--GRNVLSASLDGTIRLWE  209 (420)
T ss_dssp             ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CCCEEEECCSSCEEEEEEETT--TTEEEEEETTSCEEEEE
T ss_pred             ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC--cCceEEcCCCCcEEEEEEcCC--CCEEEEEcCCCcEEEeE
Confidence            45689999999999999999999999999999998643  567888999999999999864  88999999999999999


Q ss_pred             cCCCCceEEeEEee---cCCCceeEEE---------------------eccCCCCeEEEEEeCCCcEEEEeecCCCCeee
Q 036510           86 EGNSNEWIKDHVFE---DHKSSVNSID---------------------WAPHELGLCLACGSSDGNISVFTARADGGWDT  141 (288)
Q Consensus        86 ~~~~~~~~~~~~~~---~h~~~v~~l~---------------------~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~  141 (288)
                      ++++.   ....+.   .|...+.++.                     |+|+  +.++++|+.||.|++||++.+..  .
T Consensus       210 ~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~--~  282 (420)
T 3vl1_A          210 CGTGT---TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTY--GKYVIAGHVSGVITVHNVFSKEQ--T  282 (420)
T ss_dssp             TTTTE---EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCT--TEEEEEEETTSCEEEEETTTCCE--E
T ss_pred             CCCCc---eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCC--CCEEEEEcCCCeEEEEECCCCce--e
Confidence            98664   233343   2444555555                     4565  67899999999999999987542  2


Q ss_pred             EEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecccc-CCcceEEEEecCC
Q 036510          142 SRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQM-HTDWVRDVAWAPN  220 (288)
Q Consensus       142 ~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~  220 (288)
                      ......|...|.++.|+|++.             .+|++|+.|+.|++||++++..   .+..+.+ |...|.++.|.+ 
T Consensus       283 ~~~~~~~~~~v~~~~~~~~~~-------------~~l~~g~~dg~i~vwd~~~~~~---~~~~~~~~~~~~v~~~~~~~-  345 (420)
T 3vl1_A          283 IQLPSKFTCSCNSLTVDGNNA-------------NYIYAGYENGMLAQWDLRSPEC---PVGEFLINEGTPINNVYFAA-  345 (420)
T ss_dssp             EEECCTTSSCEEEEEECSSCT-------------TEEEEEETTSEEEEEETTCTTS---CSEEEEESTTSCEEEEEEET-
T ss_pred             EEcccccCCCceeEEEeCCCC-------------CEEEEEeCCCeEEEEEcCCCcC---chhhhhccCCCCceEEEeCC-
Confidence            334456888999999999872             3899999999999999987532   2334454 677899986654 


Q ss_pred             CCCCCcEEEEEeCCCcEEEEEeecCCCc------ccceEeeccccCeEEEEeecCCC---EEEEEeCCCcEEEeEcC
Q 036510          221 LGLPKSTIASASEDGKVIIWTVAREGDQ------WEGKVLHDFKTPVYRVSWSLTGN---ILAVADGNNNVTLWEEA  288 (288)
Q Consensus       221 ~~~~~~~l~s~s~D~~i~iw~~~~~~~~------~~~~~~~~~~~~i~~~~~spdg~---~l~s~~~d~~v~~w~~~  288 (288)
                          +.+|++++.|++|++|++.....+      .....+..+...|.+++|+|+|+   .+++++.++.+++|+++
T Consensus       346 ----~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~  418 (420)
T 3vl1_A          346 ----GALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS  418 (420)
T ss_dssp             ----TEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred             ----CCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence                368999999999999999864222      11223445667899999999999   77778889999999864

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.6e-35  Score=279.85  Aligned_cols=253  Identities=18%  Similarity=0.196  Sum_probs=211.7

Q ss_pred             CCCCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCc
Q 036510            1 MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGT   80 (288)
Q Consensus         1 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~   80 (288)
                      |.+++.+.+|.+.|.+++|+|+|++|++|+.|++|++||+..  ++.+..+.+|...|.+++|+++  +.+|++++.|+.
T Consensus         3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~   78 (814)
T 3mkq_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYET--QVEVRSIQVTETPVRAGKFIAR--KNWIIVGSDDFR   78 (814)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEEEGG--GTEEEEEETTSE
T ss_pred             cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCC--CceEEEEecCCCcEEEEEEeCC--CCEEEEEeCCCe
Confidence            345667889999999999999999999999999999999854  4678889999999999999875  889999999999


Q ss_pred             EEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCC-
Q 036510           81 VIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAP-  159 (288)
Q Consensus        81 v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p-  159 (288)
                      |++|++.++.   ....+..|...|.+++|+|+  +.++++|+.|+.|++|+++.+.  .......+|...|.++.|+| 
T Consensus        79 i~vw~~~~~~---~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~vw~~~~~~--~~~~~~~~~~~~v~~~~~~p~  151 (814)
T 3mkq_A           79 IRVFNYNTGE---KVVDFEAHPDYIRSIAVHPT--KPYVLSGSDDLTVKLWNWENNW--ALEQTFEGHEHFVMCVAFNPK  151 (814)
T ss_dssp             EEEEETTTCC---EEEEEECCSSCEEEEEECSS--SSEEEEEETTSEEEEEEGGGTS--EEEEEEECCSSCEEEEEEETT
T ss_pred             EEEEECCCCc---EEEEEecCCCCEEEEEEeCC--CCEEEEEcCCCEEEEEECCCCc--eEEEEEcCCCCcEEEEEEEcC
Confidence            9999998765   44567789999999999998  5678999999999999997652  23345568899999999999 


Q ss_pred             CCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccc-cCCcceEEEEecCCCCCCCcEEEEEeCCCcEE
Q 036510          160 STAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQ-MHTDWVRDVAWAPNLGLPKSTIASASEDGKVI  238 (288)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~  238 (288)
                      ++              ..|++++.|++|++||+.++.    ....+. .|...|.+++|+|..  .+.+|++++.|+.|+
T Consensus       152 ~~--------------~~l~~~~~dg~v~vwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~--~~~~l~~~~~dg~i~  211 (814)
T 3mkq_A          152 DP--------------STFASGCLDRTVKVWSLGQST----PNFTLTTGQERGVNYVDYYPLP--DKPYMITASDDLTIK  211 (814)
T ss_dssp             EE--------------EEEEEEETTSEEEEEETTCSS----CSEEEECCCTTCCCEEEECCST--TCCEEEEECTTSEEE
T ss_pred             CC--------------CEEEEEeCCCeEEEEECCCCc----ceeEEecCCCCCEEEEEEEECC--CCCEEEEEeCCCEEE
Confidence            44              789999999999999987653    222333 344789999999931  146899999999999


Q ss_pred             EEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          239 IWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       239 iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      +||+....   ....+..|..+|.+++|+|+|++|++++.||+|++||.
T Consensus       212 ~~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~  257 (814)
T 3mkq_A          212 IWDYQTKS---CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS  257 (814)
T ss_dssp             EEETTTTE---EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred             EEECCCCc---EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            99986432   23444567789999999999999999999999999995

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.3e-35  Score=255.68  Aligned_cols=256  Identities=15%  Similarity=0.265  Sum_probs=197.9

Q ss_pred             cccccccceEEEEEcCC----CCEEEEeeCCCcEEEEEeCCCCceeeEEEec-----cccCeEEEEecCCCC--CCEEEE
Q 036510            6 IETGHEDTVHDVAMDYY----GKRLATASSDYSIKIIGVGNNTSQHLAKLSG-----HKGAVWEVAWAHPKF--GSILAS   74 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~----g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~--~~~l~s   74 (288)
                      +..+|++.|++++|+|+    ...+++++.++.|++|++...  +.+..+..     |...|.+++|+++..  +.+|++
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~   90 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ--GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAV   90 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG--GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC--cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence            34489999999999984    466777777889999998632  33444443     567899999987532  679999


Q ss_pred             eeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeE
Q 036510           75 CSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTS  154 (288)
Q Consensus        75 ~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~  154 (288)
                      ++.|+.|++||+.++.   ....+..|...|.+++|+|++ +.++++|+.|+.|++||++.+...........|...|.+
T Consensus        91 ~~~dg~i~v~d~~~~~---~~~~~~~~~~~i~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~  166 (366)
T 3k26_A           91 AGSRGIIRIINPITMQ---CIKHYVGHGNAINELKFHPRD-PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLS  166 (366)
T ss_dssp             EETTCEEEEECTTTCC---EEEEEESCCSCEEEEEECSSC-TTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEE
T ss_pred             ecCCCEEEEEEchhce---EeeeecCCCCcEEEEEECCCC-CCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeE
Confidence            9999999999997665   455677899999999999932 678999999999999999865322221112578999999


Q ss_pred             EEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeee------------------------eeeccccCCc
Q 036510          155 VSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMD------------------------CFPALQMHTD  210 (288)
Q Consensus       155 i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~------------------------~~~~~~~h~~  210 (288)
                      +.|+|++              .+|++++.|+.|++||++++.....                        ......+|..
T Consensus       167 ~~~~~~~--------------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (366)
T 3k26_A          167 ADYDLLG--------------EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN  232 (366)
T ss_dssp             EEECTTS--------------SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred             EEECCCC--------------CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence            9999987              7899999999999999976421000                        0112234999


Q ss_pred             ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCc-----------ccceEeeccccCeEEEEeecC--CCEEEEEe
Q 036510          211 WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ-----------WEGKVLHDFKTPVYRVSWSLT--GNILAVAD  277 (288)
Q Consensus       211 ~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~-----------~~~~~~~~~~~~i~~~~~spd--g~~l~s~~  277 (288)
                      .|.+++|++      .+|++++.|+.|++||+......           .....+..+...|.+++|+|+  |++|++|+
T Consensus       233 ~v~~~~~~~------~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~  306 (366)
T 3k26_A          233 YVDCVRWLG------DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGN  306 (366)
T ss_dssp             CCCEEEEET------TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEEC
T ss_pred             eEEEEEEcC------CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEe
Confidence            999999984      48999999999999998764320           112233456678999999999  99999999


Q ss_pred             CCCcEEEeEc
Q 036510          278 GNNNVTLWEE  287 (288)
Q Consensus       278 ~d~~v~~w~~  287 (288)
                      .|+.|+|||+
T Consensus       307 ~dg~i~vwd~  316 (366)
T 3k26_A          307 QVGKLYVWDL  316 (366)
T ss_dssp             TTSCEEEEEC
T ss_pred             cCCcEEEEEC
Confidence            9999999996

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.1e-35  Score=259.52  Aligned_cols=251  Identities=19%  Similarity=0.279  Sum_probs=201.4

Q ss_pred             cccccccceEEEEEcCC----C---CEEEEeeCCCcEEEEEeCCCCc---eeeEEEecc-----ccCeEEEEecCC--CC
Q 036510            6 IETGHEDTVHDVAMDYY----G---KRLATASSDYSIKIIGVGNNTS---QHLAKLSGH-----KGAVWEVAWAHP--KF   68 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~----g---~~l~s~~~d~~i~lwd~~~~~~---~~~~~~~~h-----~~~v~~~~~~~~--~~   68 (288)
                      .+.+|...|.+++|+|+    |   ++|++++.|++|++|++.....   ..+..+.+|     ...|.+++|++.  ++
T Consensus        57 ~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  136 (397)
T 1sq9_A           57 SHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRL  136 (397)
T ss_dssp             EEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC---
T ss_pred             EEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCC
Confidence            45589999999999999    9   9999999999999999864321   116778888     599999999821  23


Q ss_pred             CCE-EEEeeCCCcEEEeecCC------CCceE--EeEEe-------ecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEe
Q 036510           69 GSI-LASCSFDGTVIIWKEGN------SNEWI--KDHVF-------EDHKSSVNSIDWAPHELGLCLACGSSDGNISVFT  132 (288)
Q Consensus        69 ~~~-l~s~s~d~~v~iwd~~~------~~~~~--~~~~~-------~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d  132 (288)
                      +.+ |++++.|+.|++||+..      .....  ....+       ..|...|.+++|+|+  + ++++|+.|+.|++||
T Consensus       137 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~-~l~~~~~dg~i~i~d  213 (397)
T 1sq9_A          137 LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER--G-LIATGFNNGTVQISE  213 (397)
T ss_dssp             -CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT--S-EEEEECTTSEEEEEE
T ss_pred             CceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCC--c-eEEEEeCCCcEEEEE
Confidence            788 99999999999999976      33211  11134       348889999999998  5 899999999999999


Q ss_pred             ecCCCCeeeEEeecc---C---CCCeeEEEeCCCCCCCceecccccCCCceeEEeecC---CcEEEEEEeCCceeeeeee
Q 036510          133 ARADGGWDTSRIDQA---H---PVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCD---NTVKVWKLYNGIWKMDCFP  203 (288)
Q Consensus       133 ~~~~~~~~~~~~~~~---~---~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~  203 (288)
                      ++...   .......   |   ...|.++.|+|++              .+|++++.|   +.|++||++++    +.+.
T Consensus       214 ~~~~~---~~~~~~~~~~h~~~~~~i~~i~~~~~~--------------~~l~~~~~d~~~g~i~i~d~~~~----~~~~  272 (397)
T 1sq9_A          214 LSTLR---PLYNFESQHSMINNSNSIRSVKFSPQG--------------SLLAIAHDSNSFGCITLYETEFG----ERIG  272 (397)
T ss_dssp             TTTTE---EEEEEECCC---CCCCCEEEEEECSST--------------TEEEEEEEETTEEEEEEEETTTC----CEEE
T ss_pred             CCCCc---eeEEEeccccccccCCccceEEECCCC--------------CEEEEEecCCCCceEEEEECCCC----cccc
Confidence            98653   2333445   7   8899999999987              789999999   99999999876    3455


Q ss_pred             cccc-------------CCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEee------cc-------
Q 036510          204 ALQM-------------HTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLH------DF-------  257 (288)
Q Consensus       204 ~~~~-------------h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~------~~-------  257 (288)
                      .+.+             |...|.+++|+|+.    .+|++++.|+.|++||+....   ....+.      .+       
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~g  345 (397)
T 1sq9_A          273 SLSVPTHSSQASLGEFAHSSWVMSLSFNDSG----ETLCSAGWDGKLRFWDVKTKE---RITTLNMHCDDIEIEEDILAV  345 (397)
T ss_dssp             EECBC--------CCBSBSSCEEEEEECSSS----SEEEEEETTSEEEEEETTTTE---EEEEEECCGGGCSSGGGCCCB
T ss_pred             eeccCcccccccccccccCCcEEEEEECCCC----CEEEEEeCCCeEEEEEcCCCc---eeEEEecccCcccchhhhhcc
Confidence            5666             99999999999974    789999999999999987532   123334      45       


Q ss_pred             --------ccCeEEEEeecCC----------CEEEEEeCCCcEEEeEc
Q 036510          258 --------KTPVYRVSWSLTG----------NILAVADGNNNVTLWEE  287 (288)
Q Consensus       258 --------~~~i~~~~~spdg----------~~l~s~~~d~~v~~w~~  287 (288)
                              ..+|.+++|+|+|          ++|++++.|+.|+||++
T Consensus       346 ~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~  393 (397)
T 1sq9_A          346 DEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE  393 (397)
T ss_dssp             CTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred             ccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence                    7889999999999          79999999999999996

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=6.6e-35  Score=251.13  Aligned_cols=252  Identities=17%  Similarity=0.131  Sum_probs=201.2

Q ss_pred             CCCCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCC-ceeeEEEeccccCeEEEEecCCCCCC-EEEEeeCC
Q 036510            1 MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNT-SQHLAKLSGHKGAVWEVAWAHPKFGS-ILASCSFD   78 (288)
Q Consensus         1 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s~d   78 (288)
                      |...++..+|++.|.+++|+|++++|++++.|++|++|++.... ......+.+|...|.+++|+++  +. +|++++.|
T Consensus         1 m~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d   78 (342)
T 1yfq_A            1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN--TDLQIYVGTVQ   78 (342)
T ss_dssp             CEEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES--SSEEEEEEETT
T ss_pred             CcceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCC--CCcEEEEEcCC
Confidence            44456677999999999999999999999999999999986543 1234556789999999999864  88 99999999


Q ss_pred             CcEEEeec-CCCCceEEeEEeec--CCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecC---------CCCeeeEEeec
Q 036510           79 GTVIIWKE-GNSNEWIKDHVFED--HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA---------DGGWDTSRIDQ  146 (288)
Q Consensus        79 ~~v~iwd~-~~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~---------~~~~~~~~~~~  146 (288)
                      +.|++|++ ..+.    ...+..  |...|.+++|+|   +.++++++.|+.|++||++.         ....   ... 
T Consensus        79 g~i~~wd~~~~~~----~~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~-  147 (342)
T 1yfq_A           79 GEILKVDLIGSPS----FQALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS---NNT-  147 (342)
T ss_dssp             SCEEEECSSSSSS----EEECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCS---SSS-
T ss_pred             CeEEEEEeccCCc----eEeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCee---eEE-
Confidence            99999998 7654    245677  999999999998   45788999999999999875         3211   112 


Q ss_pred             cCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeC-CceeeeeeeccccCCcceEEEEecC-CCCCC
Q 036510          147 AHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYN-GIWKMDCFPALQMHTDWVRDVAWAP-NLGLP  224 (288)
Q Consensus       147 ~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~  224 (288)
                      .|...+.++.|+|+.                +++++.|+.|++||++. +...  .......|...|.+++|+| +.   
T Consensus       148 ~~~~~v~~~~~~~~~----------------l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~i~~i~~~~~~~---  206 (342)
T 1yfq_A          148 KVKNKIFTMDTNSSR----------------LIVGMNNSQVQWFRLPLCEDDN--GTIEESGLKYQIRDVALLPKEQ---  206 (342)
T ss_dssp             SSCCCEEEEEECSSE----------------EEEEESTTEEEEEESSCCTTCC--CEEEECSCSSCEEEEEECSGGG---
T ss_pred             eeCCceEEEEecCCc----------------EEEEeCCCeEEEEECCcccccc--ceeeecCCCCceeEEEECCCCC---
Confidence            277889999998752                88999999999999987 4321  1122346788899999999 74   


Q ss_pred             CcEEEEEeCCCcEEEEEeecCCC---cccceEeecccc---------CeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          225 KSTIASASEDGKVIIWTVAREGD---QWEGKVLHDFKT---------PVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       225 ~~~l~s~s~D~~i~iw~~~~~~~---~~~~~~~~~~~~---------~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                       .+|++++.|+.|++|+++....   ......+..+..         +|.+++|+|+|++|++|+.|+.|++||.
T Consensus       207 -~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~  280 (342)
T 1yfq_A          207 -EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL  280 (342)
T ss_dssp             -CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred             -CEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC
Confidence             6899999999999999876410   012233444433         8999999999999999999999999995

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.5e-34  Score=258.20  Aligned_cols=245  Identities=27%  Similarity=0.392  Sum_probs=199.1

Q ss_pred             Cccccccccce-EEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEE
Q 036510            4 QKIETGHEDTV-HDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVI   82 (288)
Q Consensus         4 ~~~~~~h~~~v-~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~   82 (288)
                      ...+.+|.+.| .++.+  ++++|++|+.|++|++||+..  ++.+..+.+|...|++++|+++  + +|++|+.|++|+
T Consensus       114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~--~~~~~~~~~h~~~V~~l~~~~~--~-~l~s~s~dg~i~  186 (464)
T 3v7d_B          114 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSIN--KKFLLQLSGHDGGVWALKYAHG--G-ILVSGSTDRTVR  186 (464)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECST--T-EEEEEETTSCEE
T ss_pred             eEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCC--CcEEEEEeCCCcCEEEEEEcCC--C-EEEEEeCCCCEE
Confidence            34567898875 55555  578999999999999999854  4778899999999999999753  3 999999999999


Q ss_pred             EeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeee--------------------E
Q 036510           83 IWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDT--------------------S  142 (288)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~--------------------~  142 (288)
                      +||+.++.   ....+.+|...|.+++|+|.+.+.++++|+.|++|++||++.......                    .
T Consensus       187 vwd~~~~~---~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (464)
T 3v7d_B          187 VWDIKKGC---CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV  263 (464)
T ss_dssp             EEETTTTE---EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEE
T ss_pred             EEECCCCc---EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEE
Confidence            99998764   456678899999999999765578899999999999999986542211                    2


Q ss_pred             EeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCC
Q 036510          143 RIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLG  222 (288)
Q Consensus       143 ~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~  222 (288)
                      ....+|...+.++..  ++              .++++++.|+.|++||+.++    +++..+.+|...|.++.|+|++ 
T Consensus       264 ~~~~~~~~~v~~~~~--~~--------------~~l~~~~~d~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~-  322 (464)
T 3v7d_B          264 GVLRGHMASVRTVSG--HG--------------NIVVSGSYDNTLIVWDVAQM----KCLYILSGHTDRIYSTIYDHER-  322 (464)
T ss_dssp             EEECCCSSCEEEEEE--ET--------------TEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEEETTT-
T ss_pred             EEccCccceEEEEcC--CC--------------CEEEEEeCCCeEEEEECCCC----cEEEEecCCCCCEEEEEEcCCC-
Confidence            334566666666643  22              67999999999999999876    4566778899999999999974 


Q ss_pred             CCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          223 LPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       223 ~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                         .+|++|+.|++|++||++...   ....+..|..+|.+++|+  +++|++|+.|++|++||.
T Consensus       323 ---~~l~sg~~dg~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~  379 (464)
T 3v7d_B          323 ---KRCISASMDTTIRIWDLENGE---LMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDA  379 (464)
T ss_dssp             ---TEEEEEETTSCEEEEETTTTE---EEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred             ---CEEEEEeCCCcEEEEECCCCc---EEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEEC
Confidence               689999999999999986532   234456778899999997  689999999999999995

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.1e-34  Score=254.77  Aligned_cols=253  Identities=15%  Similarity=0.169  Sum_probs=201.7

Q ss_pred             ccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCC----ceeeEEEeccccCeEEEEecCC--CCC---CEEEEe
Q 036510            5 KIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNT----SQHLAKLSGHKGAVWEVAWAHP--KFG---SILASC   75 (288)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~----~~~~~~~~~h~~~v~~~~~~~~--~~~---~~l~s~   75 (288)
                      +.+.+|++.|++++|+|  ++|++|+.|++|++|++....    .+.+..+.+|...|.+++|+++  .++   .+|+++
T Consensus        10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~   87 (397)
T 1sq9_A           10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   87 (397)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE
Confidence            45679999999999998  799999999999999986543    2357888999999999999852  127   899999


Q ss_pred             eCCCcEEEeecCCCCc--eEEeEEeecC-----CCceeEEEec----cCCCCeE-EEEEeCCCcEEEEeecC------CC
Q 036510           76 SFDGTVIIWKEGNSNE--WIKDHVFEDH-----KSSVNSIDWA----PHELGLC-LACGSSDGNISVFTARA------DG  137 (288)
Q Consensus        76 s~d~~v~iwd~~~~~~--~~~~~~~~~h-----~~~v~~l~~~----p~~~~~~-l~sg~~d~~i~i~d~~~------~~  137 (288)
                      +.|+.|++|++.....  ......+..|     ...|.+++|+    |+  +.+ +++|+.|+.|++||++.      ..
T Consensus        88 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  165 (397)
T 1sq9_A           88 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRL--LSHRLVATDVKGTTYIWKFHPFADESNSL  165 (397)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC------CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCC--CceEEEEEeCCCcEEEEeCCccccccccc
Confidence            9999999999876542  0113456667     5899999999    76  567 99999999999999987      43


Q ss_pred             Cee--eEEee-------ccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecccc-
Q 036510          138 GWD--TSRID-------QAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQM-  207 (288)
Q Consensus       138 ~~~--~~~~~-------~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-  207 (288)
                      ...  +....       ..|...+.++.|+|++               +|++++.|+.|++||++++    +.+..+.. 
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------------~l~~~~~dg~i~i~d~~~~----~~~~~~~~~  226 (397)
T 1sq9_A          166 TLNWSPTLELQGTVESPMTPSQFATSVDISERG---------------LIATGFNNGTVQISELSTL----RPLYNFESQ  226 (397)
T ss_dssp             TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS---------------EEEEECTTSEEEEEETTTT----EEEEEEECC
T ss_pred             eeeccCcceeeeeeccccCCCCCceEEEECCCc---------------eEEEEeCCCcEEEEECCCC----ceeEEEecc
Confidence            322  11122       4478889999999863               6889999999999999876    34555666 


Q ss_pred             --C---CcceEEEEecCCCCCCCcEEEEEeCC---CcEEEEEeecCCCcccceEeec-------------cccCeEEEEe
Q 036510          208 --H---TDWVRDVAWAPNLGLPKSTIASASED---GKVIIWTVAREGDQWEGKVLHD-------------FKTPVYRVSW  266 (288)
Q Consensus       208 --h---~~~V~~v~~sp~~~~~~~~l~s~s~D---~~i~iw~~~~~~~~~~~~~~~~-------------~~~~i~~~~~  266 (288)
                        |   ...|.+++|+|+.    .+|++++.|   +.|++||+....   ....+..             +..+|.+++|
T Consensus       227 ~~h~~~~~~i~~i~~~~~~----~~l~~~~~d~~~g~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  299 (397)
T 1sq9_A          227 HSMINNSNSIRSVKFSPQG----SLLAIAHDSNSFGCITLYETEFGE---RIGSLSVPTHSSQASLGEFAHSSWVMSLSF  299 (397)
T ss_dssp             C---CCCCCEEEEEECSST----TEEEEEEEETTEEEEEEEETTTCC---EEEEECBC--------CCBSBSSCEEEEEE
T ss_pred             ccccccCCccceEEECCCC----CEEEEEecCCCCceEEEEECCCCc---ccceeccCcccccccccccccCCcEEEEEE
Confidence              8   8899999999984    789999999   999999987542   1233444             7789999999


Q ss_pred             ecCCCEEEEEeCCCcEEEeEc
Q 036510          267 SLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       267 spdg~~l~s~~~d~~v~~w~~  287 (288)
                      +|+|++|++++.|+.|+|||+
T Consensus       300 ~~~~~~l~~~~~dg~i~iwd~  320 (397)
T 1sq9_A          300 NDSGETLCSAGWDGKLRFWDV  320 (397)
T ss_dssp             CSSSSEEEEEETTSEEEEEET
T ss_pred             CCCCCEEEEEeCCCeEEEEEc
Confidence            999999999999999999996

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.9e-34  Score=241.80  Aligned_cols=242  Identities=17%  Similarity=0.189  Sum_probs=198.7

Q ss_pred             CccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510            4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVII   83 (288)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i   83 (288)
                      ...+.+|++.|.+++| +++++|++|+.|++|++||+..  .+....+..|...|.+++|+++  +.+|++++.|+.+++
T Consensus        11 ~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~   85 (313)
T 3odt_A           11 SATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDD--QWLGTVVYTGQGFLNSVCYDSE--KELLLFGGKDTMING   85 (313)
T ss_dssp             EEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESS--SEEEEEEEECSSCEEEEEEETT--TTEEEEEETTSCEEE
T ss_pred             HHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCC--CEEEEEeecCCccEEEEEECCC--CCEEEEecCCCeEEE
Confidence            3456799999999999 8999999999999999999954  3667788899999999999874  899999999999999


Q ss_pred             eecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCC
Q 036510           84 WKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAP  163 (288)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~  163 (288)
                      |++...........+..|...|.+++|+    +.++++++.|+.|++||.  .   ........|...+.++.|.|..  
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~~~~~d~~i~~~d~--~---~~~~~~~~~~~~v~~~~~~~~~--  154 (313)
T 3odt_A           86 VPLFATSGEDPLYTLIGHQGNVCSLSFQ----DGVVISGSWDKTAKVWKE--G---SLVYNLQAHNASVWDAKVVSFS--  154 (313)
T ss_dssp             EETTCCTTSCC-CEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEET--T---EEEEEEECCSSCEEEEEEEETT--
T ss_pred             EEeeecCCCCcccchhhcccCEEEEEec----CCEEEEEeCCCCEEEEcC--C---cEEEecccCCCceeEEEEccCC--
Confidence            9987654333445677899999999994    347899999999999992  1   2334556788999999998833  


Q ss_pred             CceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecccc-CCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEe
Q 036510          164 GALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQM-HTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV  242 (288)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~  242 (288)
                                 ...+++++.|+.|++||..      +....+.. |...|.++.|+|+.     .+++++.|+.|++||+
T Consensus       155 -----------~~~l~~~~~d~~i~i~d~~------~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~dg~i~i~d~  212 (313)
T 3odt_A          155 -----------ENKFLTASADKTIKLWQND------KVIKTFSGIHNDVVRHLAVVDDG-----HFISCSNDGLIKLVDM  212 (313)
T ss_dssp             -----------TTEEEEEETTSCEEEEETT------EEEEEECSSCSSCEEEEEEEETT-----EEEEEETTSEEEEEET
T ss_pred             -----------CCEEEEEECCCCEEEEecC------ceEEEEeccCcccEEEEEEcCCC-----eEEEccCCCeEEEEEC
Confidence                       1789999999999999932      23344555 88899999999973     4999999999999998


Q ss_pred             ecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          243 AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      +...   ....+..|..+|.+++|+|+| +|++++.|+.|++||+
T Consensus       213 ~~~~---~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~  253 (313)
T 3odt_A          213 HTGD---VLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSK  253 (313)
T ss_dssp             TTCC---EEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECT
T ss_pred             Cchh---hhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEEC
Confidence            7532   224455677899999999999 5889999999999995

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3.6e-34  Score=285.43  Aligned_cols=251  Identities=20%  Similarity=0.324  Sum_probs=211.2

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      .+.+|.+.|++++|+|+|++|++|+.|++|++||+..  ++.+.++.+|...|.+++|+++  +.+|++++.|++|++||
T Consensus       610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~--~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~~d~~v~vwd  685 (1249)
T 3sfz_A          610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET--GEKLLDIKAHEDEVLCCAFSSD--DSYIATCSADKKVKIWD  685 (1249)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEEEECTT--SSEEEEEETTSEEEEEE
T ss_pred             EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCC--CCEEEEeccCCCCEEEEEEecC--CCEEEEEeCCCeEEEEE
Confidence            4568999999999999999999999999999999854  4678889999999999999865  89999999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      +.++.   ....+.+|...|.+++|+|+....++++|+.|+.|++||++++..   .....+|...|.++.|+|++    
T Consensus       686 ~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~---~~~~~~h~~~v~~~~~sp~~----  755 (1249)
T 3sfz_A          686 SATGK---LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC---RNTMFGHTNSVNHCRFSPDD----  755 (1249)
T ss_dssp             TTTCC---EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE---EEEECCCSSCEEEEEECSST----
T ss_pred             CCCCc---eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch---hheecCCCCCEEEEEEecCC----
Confidence            98765   456778899999999999976677899999999999999987542   34456899999999999987    


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCCceeee---------------------------------------------
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMD---------------------------------------------  200 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~---------------------------------------------  200 (288)
                                .++++++.|++|++||+.++.....                                             
T Consensus       756 ----------~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d  825 (1249)
T 3sfz_A          756 ----------ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFD  825 (1249)
T ss_dssp             ----------TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEE
T ss_pred             ----------CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEE
Confidence                      6789999999999999865421100                                             


Q ss_pred             -----eeec-cccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEE
Q 036510          201 -----CFPA-LQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILA  274 (288)
Q Consensus       201 -----~~~~-~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~  274 (288)
                           .... ..+|...|.++.|+|++    .++++++.|+.|++|++....   ....+.+|..+|.+++|+|+|++|+
T Consensus       826 ~~~~~~~~~~~~~~~~~v~~~~~sp~~----~~l~~~~~dg~v~vwd~~~~~---~~~~~~~h~~~v~~v~~spdg~~l~  898 (1249)
T 3sfz_A          826 IHTSGLLAEIHTGHHSTIQYCDFSPYD----HLAVIALSQYCVELWNIDSRL---KVADCRGHLSWVHGVMFSPDGSSFL  898 (1249)
T ss_dssp             TTTCCEEEEEECSSSSCCCEEEECSST----TEEEEECSSSCEEEEETTTTE---EEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             ecCCCceeEEcCCCCCceEEEEEcCCC----CEEEEEeCCCeEEEEEcCCCc---eeeecCCCccceEEEEECCCCCEEE
Confidence                 0001 12788889999999974    789999999999999987531   2344567788999999999999999


Q ss_pred             EEeCCCcEEEeEc
Q 036510          275 VADGNNNVTLWEE  287 (288)
Q Consensus       275 s~~~d~~v~~w~~  287 (288)
                      +++.|++|++|+.
T Consensus       899 s~s~dg~v~vw~~  911 (1249)
T 3sfz_A          899 TASDDQTIRVWET  911 (1249)
T ss_dssp             EEETTSCEEEEEH
T ss_pred             EEeCCCeEEEEEc
Confidence            9999999999984

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.9e-34  Score=249.24  Aligned_cols=256  Identities=16%  Similarity=0.204  Sum_probs=194.1

Q ss_pred             cccccccceEEEEEcCCCCEE-EEeeC---CCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCC-CCCEEEEeeCCCc
Q 036510            6 IETGHEDTVHDVAMDYYGKRL-ATASS---DYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPK-FGSILASCSFDGT   80 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l-~s~~~---d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~s~d~~   80 (288)
                      ++.+|.+.|.+++|+|+++.+ ++|+.   |++|++|++..+.... ....+|...|.+++|+++. ++.+|++++.|+.
T Consensus        13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~   91 (357)
T 3i2n_A           13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL-LREIEKAKPIKCGTFGATSLQQRYLATGDFGGN   91 (357)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE-EEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred             hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc-eeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence            445799999999999999655 56665   9999999997543222 2234799999999998641 2689999999999


Q ss_pred             EEEeecCCCCceEEeEEeecCCCceeEEEecc----CCCCeEEEEEeCCCcEEEEeecCCC-CeeeEEeeccC-CCCeeE
Q 036510           81 VIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAP----HELGLCLACGSSDGNISVFTARADG-GWDTSRIDQAH-PVGVTS  154 (288)
Q Consensus        81 v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p----~~~~~~l~sg~~d~~i~i~d~~~~~-~~~~~~~~~~~-~~~v~~  154 (288)
                      |++||+.....  ....+..|...|.+++|.|    ...+.++++|+.|+.|++||++.+. .........++ ...+.+
T Consensus        92 i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~  169 (357)
T 3i2n_A           92 LHIWNLEAPEM--PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWT  169 (357)
T ss_dssp             EEEECTTSCSS--CSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEE
T ss_pred             EEEEeCCCCCc--cEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEE
Confidence            99999976542  2345778999999997643    1226789999999999999998764 22222222222 347888


Q ss_pred             EE----eCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecC---CCCCCCcE
Q 036510          155 VS----WAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAP---NLGLPKST  227 (288)
Q Consensus       155 i~----~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp---~~~~~~~~  227 (288)
                      +.    |+|++              .+|++++.|+.|++||++++.    . .....|...|.++.|+|   +    +.+
T Consensus       170 ~~~~~~~~~~~--------------~~l~~~~~d~~i~i~d~~~~~----~-~~~~~~~~~v~~~~~~~~~~~----~~~  226 (357)
T 3i2n_A          170 VAFGNAYNQEE--------------RVVCAGYDNGDIKLFDLRNMA----L-RWETNIKNGVCSLEFDRKDIS----MNK  226 (357)
T ss_dssp             EEEECCCC-CC--------------CEEEEEETTSEEEEEETTTTE----E-EEEEECSSCEEEEEESCSSSS----CCE
T ss_pred             EEEEeccCCCC--------------CEEEEEccCCeEEEEECccCc----e-eeecCCCCceEEEEcCCCCCC----CCE
Confidence            88    55554              789999999999999998763    2 22366888999999999   5    468


Q ss_pred             EEEEeCCCcEEEEEeecCCCcccc--eEeeccccCeEEEEeecCCC-EEEEEeCCCcEEEeEc
Q 036510          228 IASASEDGKVIIWTVAREGDQWEG--KVLHDFKTPVYRVSWSLTGN-ILAVADGNNNVTLWEE  287 (288)
Q Consensus       228 l~s~s~D~~i~iw~~~~~~~~~~~--~~~~~~~~~i~~~~~spdg~-~l~s~~~d~~v~~w~~  287 (288)
                      |++++.|+.|++||++........  .....+...|++++|+|+|+ +|++|+.|+.|+|||+
T Consensus       227 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~  289 (357)
T 3i2n_A          227 LVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKY  289 (357)
T ss_dssp             EEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEE
T ss_pred             EEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeec
Confidence            999999999999999864221111  12236778999999999999 8999999999999995

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=8.5e-35  Score=255.06  Aligned_cols=247  Identities=15%  Similarity=0.161  Sum_probs=186.2

Q ss_pred             cccccceEEEEEcC-CCCEEEEeeCCCcEEEEEeCCCCceeeEEEec---cccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510            8 TGHEDTVHDVAMDY-YGKRLATASSDYSIKIIGVGNNTSQHLAKLSG---HKGAVWEVAWAHPKFGSILASCSFDGTVII   83 (288)
Q Consensus         8 ~~h~~~v~~~~~s~-~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i   83 (288)
                      .+|...|.+++|+| ++++|++++.|++|++||+..   ..+..+..   |...|.+++|+++  +.+|++++.|+.|++
T Consensus       115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i  189 (383)
T 3ei3_B          115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG---SVIQVFAKTDSWDYWYCCVDVSVS--RQMLATGDSTGRLLL  189 (383)
T ss_dssp             CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS---CEEEEEECCCCSSCCEEEEEEETT--TTEEEEEETTSEEEE
T ss_pred             CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC---CceEEEeccCCCCCCeEEEEECCC--CCEEEEECCCCCEEE
Confidence            37999999999999 679999999999999999964   33444544   4588999999865  889999999999999


Q ss_pred             eecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCC-CCC
Q 036510           84 WKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAP-STA  162 (288)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p-~~~  162 (288)
                      ||+. +.   ....+..|...|.+++|+|++ ..++++|+.|+.|++||++............+|...|.++.|+| ++ 
T Consensus       190 ~d~~-~~---~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-  263 (383)
T 3ei3_B          190 LGLD-GH---EIFKEKLHKAKVTHAEFNPRC-DWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDS-  263 (383)
T ss_dssp             EETT-SC---EEEEEECSSSCEEEEEECSSC-TTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTS-
T ss_pred             EECC-CC---EEEEeccCCCcEEEEEECCCC-CCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCC-
Confidence            9984 33   445677899999999999984 22799999999999999986321111112226889999999999 76 


Q ss_pred             CCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeee---ccccCCc----------ceEEEEecCCCCCCCcEEE
Q 036510          163 PGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFP---ALQMHTD----------WVRDVAWAPNLGLPKSTIA  229 (288)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~h~~----------~V~~v~~sp~~~~~~~~l~  229 (288)
                                   .+|++++.|+.|++||++++........   ....|..          .+..+.|+|++    .+  
T Consensus       264 -------------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg----~~--  324 (383)
T 3ei3_B          264 -------------TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDD----QL--  324 (383)
T ss_dssp             -------------CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCT----TT--
T ss_pred             -------------CEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCc----cc--
Confidence                         7899999999999999977532111110   0112222          33446666653    33  


Q ss_pred             EEeCCCcEEEEEeecCCCcccceEeec--cccCeEEEEeecCCCEEEEEeCCCcEEEeEcC
Q 036510          230 SASEDGKVIIWTVAREGDQWEGKVLHD--FKTPVYRVSWSLTGNILAVADGNNNVTLWEEA  288 (288)
Q Consensus       230 s~s~D~~i~iw~~~~~~~~~~~~~~~~--~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~~  288 (288)
                      +|+.|+.|++||+.....   ...+..  +...+..++|+|+|++|++|+ |++|+|||++
T Consensus       325 s~s~d~~i~iwd~~~~~~---~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~  381 (383)
T 3ei3_B          325 LLNDKRTIDIYDANSGGL---VHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRE  381 (383)
T ss_dssp             CTTCCCCEEEEETTTCCE---EEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC
T ss_pred             ccCCCCeEEEEecCCCce---eeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecC
Confidence            788999999999875421   223333  345677789999999999997 9999999964

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-34  Score=251.45  Aligned_cols=247  Identities=16%  Similarity=0.249  Sum_probs=201.1

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCC
Q 036510            9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN   88 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~   88 (288)
                      +|.+.|.+++|+|+|++|++|+.|+.|++|+.   .+..+..+.+|...|.+++|+++  +.+|++++.|+.|++||+.+
T Consensus       106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~---~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~  180 (425)
T 1r5m_A          106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWNK---TGALLNVLNFHRAPIVSVKWNKD--GTHIISMDVENVTILWNVIS  180 (425)
T ss_dssp             --CBCEEEEEECTTSSEEEEEETTSCEEEEET---TSCEEEEECCCCSCEEEEEECTT--SSEEEEEETTCCEEEEETTT
T ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCeEEEEeC---CCCeeeeccCCCccEEEEEECCC--CCEEEEEecCCeEEEEECCC
Confidence            47889999999999999999999999999994   33567888999999999999864  88999999999999999865


Q ss_pred             CCceE-----------------------------------------------------EeEEeecCCCceeEEEeccCCC
Q 036510           89 SNEWI-----------------------------------------------------KDHVFEDHKSSVNSIDWAPHEL  115 (288)
Q Consensus        89 ~~~~~-----------------------------------------------------~~~~~~~h~~~v~~l~~~p~~~  115 (288)
                      +....                                                     ....+..|...|.+++|+|+  
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~--  258 (425)
T 1r5m_A          181 GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT--  258 (425)
T ss_dssp             TEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT--
T ss_pred             CcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC--
Confidence            32110                                                     01234468889999999998  


Q ss_pred             CeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCC
Q 036510          116 GLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNG  195 (288)
Q Consensus       116 ~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  195 (288)
                      +.++++++.|+.|++||++.....   .....|...+.++.|+|++               ++++++.|+.|++||+.++
T Consensus       259 ~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~i~~~~~~~~~---------------~l~~~~~d~~i~i~d~~~~  320 (425)
T 1r5m_A          259 NKLLLSASDDGTLRIWHGGNGNSQ---NCFYGHSQSIVSASWVGDD---------------KVISCSMDGSVRLWSLKQN  320 (425)
T ss_dssp             TTEEEEEETTSCEEEECSSSBSCS---EEECCCSSCEEEEEEETTT---------------EEEEEETTSEEEEEETTTT
T ss_pred             CCEEEEEcCCCEEEEEECCCCccc---eEecCCCccEEEEEECCCC---------------EEEEEeCCCcEEEEECCCC
Confidence            568999999999999999865432   3345788899999999863               6889999999999999876


Q ss_pred             ceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCc-----------------ccceEeeccc
Q 036510          196 IWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ-----------------WEGKVLHDFK  258 (288)
Q Consensus       196 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~-----------------~~~~~~~~~~  258 (288)
                          +++..+..|...|.+++|+|++    .+|++++.|+.|++||+......                 .....+..+.
T Consensus       321 ----~~~~~~~~~~~~i~~~~~s~~~----~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (425)
T 1r5m_A          321 ----TLLALSIVDGVPIFAGRISQDG----QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQ  392 (425)
T ss_dssp             ----EEEEEEECTTCCEEEEEECTTS----SEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTT
T ss_pred             ----cEeEecccCCccEEEEEEcCCC----CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcc
Confidence                3555667889999999999984    78999999999999999753200                 0123344554


Q ss_pred             c--CeEEEEeecCCCEEEEEeCCCcEEEeEcC
Q 036510          259 T--PVYRVSWSLTGNILAVADGNNNVTLWEEA  288 (288)
Q Consensus       259 ~--~i~~~~~spdg~~l~s~~~d~~v~~w~~~  288 (288)
                      .  .|.+++|+|+|++|++++.|+.|+||+++
T Consensus       393 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          393 DNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             CCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             cCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence            4  89999999999999999999999999974

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.3e-34  Score=246.10  Aligned_cols=215  Identities=26%  Similarity=0.359  Sum_probs=177.6

Q ss_pred             eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCc--eEEeEEeecCCCceeEEEeccCCCCeEEEEEe
Q 036510           46 QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNE--WIKDHVFEDHKSSVNSIDWAPHELGLCLACGS  123 (288)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~  123 (288)
                      ....++.+|.+.|++++|+++ .+++|+|||.|++|++|++.....  ......+.+|...|.+++|+|+  +.++++|+
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~~-~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~d--g~~l~s~s   84 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSAG-QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD--GAYALSAS   84 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTT--SSEEEEEE
T ss_pred             EEEEEEccccceEEEEEccCC-CccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCC--CCEEEEEe
Confidence            446778999999999999864 368999999999999999854221  1245678899999999999998  67899999


Q ss_pred             CCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeee
Q 036510          124 SDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFP  203 (288)
Q Consensus       124 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  203 (288)
                      .|++|++||++++.   ......+|...|.++.|+|++              .+|++|+.|++|++||++.     +++.
T Consensus        85 ~D~~v~~wd~~~~~---~~~~~~~h~~~v~~~~~~~~~--------------~~l~s~s~D~~i~vwd~~~-----~~~~  142 (319)
T 3frx_A           85 WDKTLRLWDVATGE---TYQRFVGHKSDVMSVDIDKKA--------------SMIISGSRDKTIKVWTIKG-----QCLA  142 (319)
T ss_dssp             TTSEEEEEETTTTE---EEEEEECCSSCEEEEEECTTS--------------CEEEEEETTSCEEEEETTS-----CEEE
T ss_pred             CCCEEEEEECCCCC---eeEEEccCCCcEEEEEEcCCC--------------CEEEEEeCCCeEEEEECCC-----CeEE
Confidence            99999999998753   234557899999999999987              7899999999999999865     3456


Q ss_pred             ccccCCcceEEEEecCCCCC--CCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCc
Q 036510          204 ALQMHTDWVRDVAWAPNLGL--PKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNN  281 (288)
Q Consensus       204 ~~~~h~~~V~~v~~sp~~~~--~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~  281 (288)
                      .+.+|...|.++.|+|....  .+.+|++++.|++|++||++...   ....+.+|..+|.+++|+|+|++|++|+.|++
T Consensus       143 ~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~---~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~  219 (319)
T 3frx_A          143 TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ---IEADFIGHNSNINTLTASPDGTLIASAGKDGE  219 (319)
T ss_dssp             EECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE---EEEEECCCCSCEEEEEECTTSSEEEEEETTCE
T ss_pred             EEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch---hheeecCCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence            77899999999999996321  23589999999999999987431   22345678889999999999999999999999


Q ss_pred             EEEeEcC
Q 036510          282 VTLWEEA  288 (288)
Q Consensus       282 v~~w~~~  288 (288)
                      |+|||++
T Consensus       220 i~iwd~~  226 (319)
T 3frx_A          220 IMLWNLA  226 (319)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            9999953

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.9e-35  Score=259.97  Aligned_cols=255  Identities=14%  Similarity=0.114  Sum_probs=191.8

Q ss_pred             cccccceEEEEEcC-CCCEEEEeeCCCcEEEEEeCC---CC-ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEE
Q 036510            8 TGHEDTVHDVAMDY-YGKRLATASSDYSIKIIGVGN---NT-SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVI   82 (288)
Q Consensus         8 ~~h~~~v~~~~~s~-~g~~l~s~~~d~~i~lwd~~~---~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~   82 (288)
                      .+|++.|.+++|+| +|++|++|+.|++|++||+..   .. .+....+ +|...|++++|+++  +.+|++++.|++|+
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~--~~~l~s~s~dg~i~  136 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPN--FDAFAVSSKDGQII  136 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTT--SSEEEEEETTSEEE
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCC--CCEEEEEeCCCEEE
Confidence            68999999999999 999999999999999999853   21 1123333 59999999999864  88999999999999


Q ss_pred             EeecC---CCCceE-----EeEEe--ec--CCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeecc--C
Q 036510           83 IWKEG---NSNEWI-----KDHVF--ED--HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQA--H  148 (288)
Q Consensus        83 iwd~~---~~~~~~-----~~~~~--~~--h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~--~  148 (288)
                      +||+.   .+....     ....+  ..  +...+.++.+...+.+.++++|+.|+.|++||++.+..   ......  |
T Consensus       137 vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~h  213 (437)
T 3gre_A          137 VLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER---LQIIENSPR  213 (437)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE---EEEEECCGG
T ss_pred             EEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee---eEEEccCCC
Confidence            99984   332110     01111  11  45566777644333478899999999999999987543   223334  7


Q ss_pred             CCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccc-cCCcceEEEEecCCCCCCCcE
Q 036510          149 PVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQ-MHTDWVRDVAWAPNLGLPKST  227 (288)
Q Consensus       149 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~~~~  227 (288)
                      ...|.++.|+|++              .+|++|+.|++|++||++++    +++..+. .|...|.++.|+|.....+.+
T Consensus       214 ~~~v~~~~~s~~~--------------~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~s~~~~~  275 (437)
T 3gre_A          214 HGAVSSICIDEEC--------------CVLILGTTRGIIDIWDIRFN----VLIRSWSFGDHAPITHVEVCQFYGKNSVI  275 (437)
T ss_dssp             GCCEEEEEECTTS--------------CEEEEEETTSCEEEEETTTT----EEEEEEBCTTCEEEEEEEECTTTCTTEEE
T ss_pred             CCceEEEEECCCC--------------CEEEEEcCCCeEEEEEcCCc----cEEEEEecCCCCceEEEEeccccCCCccE
Confidence            7899999999986              78999999999999999876    3445554 677899999888754333568


Q ss_pred             EEEEeCCCcEEEEEeecCCCcccce---------------------Eeec--cccCeEEEEeecCCCEEEEEeCCCcEEE
Q 036510          228 IASASEDGKVIIWTVAREGDQWEGK---------------------VLHD--FKTPVYRVSWSLTGNILAVADGNNNVTL  284 (288)
Q Consensus       228 l~s~s~D~~i~iw~~~~~~~~~~~~---------------------~~~~--~~~~i~~~~~spdg~~l~s~~~d~~v~~  284 (288)
                      |++|+.|++|++||++.........                     .+.+  +...|.+++|+ ++++|++|+.|++|++
T Consensus       276 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~  354 (437)
T 3gre_A          276 VVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVM  354 (437)
T ss_dssp             EEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEE
T ss_pred             EEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEE
Confidence            9999999999999987432100000                     0111  55678999999 8899999999999999


Q ss_pred             eEc
Q 036510          285 WEE  287 (288)
Q Consensus       285 w~~  287 (288)
                      ||+
T Consensus       355 wd~  357 (437)
T 3gre_A          355 FSL  357 (437)
T ss_dssp             EET
T ss_pred             EEC
Confidence            995

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=5.8e-35  Score=250.47  Aligned_cols=225  Identities=28%  Similarity=0.441  Sum_probs=180.6

Q ss_pred             cccccccceEEEEEcC--CCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510            6 IETGHEDTVHDVAMDY--YGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVII   83 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~--~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i   83 (288)
                      .+.+|++.|.+++|++  +|++|+||+.|++|++||+..+..+.+..+.+|...|++++|+++..+.+|++++.|++|++
T Consensus        52 ~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~l  131 (316)
T 3bg1_A           52 DLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL  131 (316)
T ss_dssp             EEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEE
T ss_pred             EEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEE
Confidence            3569999999999986  48999999999999999986543345677889999999999987645789999999999999


Q ss_pred             eecCCCCceEEeEEeecCCCceeEEEeccCCC---------------CeEEEEEeCCCcEEEEeecCCCCeeeEEeeccC
Q 036510           84 WKEGNSNEWIKDHVFEDHKSSVNSIDWAPHEL---------------GLCLACGSSDGNISVFTARADGGWDTSRIDQAH  148 (288)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~---------------~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~  148 (288)
                      |++.....+.....+.+|...|.+++|+|+..               +.++++|+.|++|++||++....+......++|
T Consensus       132 wd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h  211 (316)
T 3bg1_A          132 LTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH  211 (316)
T ss_dssp             EEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC
T ss_pred             EecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC
Confidence            99976544433455678999999999999731               357999999999999999765444455567789


Q ss_pred             CCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEE
Q 036510          149 PVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTI  228 (288)
Q Consensus       149 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l  228 (288)
                      ...|.++.|+|++..          +..+|++++.|++|+|||+.+..........+..|...|.+++|+|++    .+|
T Consensus       212 ~~~V~~v~~sp~~~~----------~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g----~~l  277 (316)
T 3bg1_A          212 SDWVRDVAWAPSIGL----------PTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITA----NIL  277 (316)
T ss_dssp             SSCEEEEECCCCSSC----------SCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTT----CCE
T ss_pred             CCceEEEEecCCCCC----------CCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCC----CEE
Confidence            999999999998521          125799999999999999876211101122346788999999999984    689


Q ss_pred             EEEeCCCcEEEEEeec
Q 036510          229 ASASEDGKVIIWTVAR  244 (288)
Q Consensus       229 ~s~s~D~~i~iw~~~~  244 (288)
                      |+++.|++|++|+...
T Consensus       278 as~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          278 AVSGGDNKVTLWKESV  293 (316)
T ss_dssp             EEEESSSCEEEEEECT
T ss_pred             EEEcCCCeEEEEEECC
Confidence            9999999999999763

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-35  Score=260.62  Aligned_cols=253  Identities=19%  Similarity=0.334  Sum_probs=200.3

Q ss_pred             ccccceEEEEEcCCCC-EEEEe----------eCCCcEEEEEeCCCCc-eeeEEEeccccCeEEEEecCCCCCCEEEEee
Q 036510            9 GHEDTVHDVAMDYYGK-RLATA----------SSDYSIKIIGVGNNTS-QHLAKLSGHKGAVWEVAWAHPKFGSILASCS   76 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~-~l~s~----------~~d~~i~lwd~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s   76 (288)
                      .+...|.+++|+|+|+ +|++|          +.|++|++|++..... +.+.. ..|...|.+++|+++  +.+|++++
T Consensus        10 ~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~--~~~l~~~~   86 (416)
T 2pm9_A           10 AEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDSKFNDLDWSHN--NKIIAGAL   86 (416)
T ss_dssp             CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCCSSCEEEEEECSS--SSCEEEEE
T ss_pred             hhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-EecCCceEEEEECCC--CCeEEEEc
Confidence            3556788999999986 99999          8999999999864321 12333 358999999999864  88999999


Q ss_pred             CCCcEEEeecCCCCc-eEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCC------CeeeEEeeccCC
Q 036510           77 FDGTVIIWKEGNSNE-WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADG------GWDTSRIDQAHP  149 (288)
Q Consensus        77 ~d~~v~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~------~~~~~~~~~~~~  149 (288)
                      .|+.|++|++..... ......+..|...|.+++|+|++ +.++++++.|+.|++||++...      ..........|.
T Consensus        87 ~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  165 (416)
T 2pm9_A           87 DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ-DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSV  165 (416)
T ss_dssp             SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS-TTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSS
T ss_pred             cCCeEEEeecccccccccchhhccCCccceEEEEEcCCC-CCEEEEEcCCCeEEEEECCCCccccccccccccccccCCC
Confidence            999999999876211 11455677899999999999974 4578999999999999998754      221222335688


Q ss_pred             CCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccC------CcceEEEEecCCCCC
Q 036510          150 VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMH------TDWVRDVAWAPNLGL  223 (288)
Q Consensus       150 ~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h------~~~V~~v~~sp~~~~  223 (288)
                      ..|.++.|+|++.             .+|++++.|+.|++||++++.    .+..+..|      ...|.+++|+|+.  
T Consensus       166 ~~v~~~~~~~~~~-------------~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~--  226 (416)
T 2pm9_A          166 DEVISLAWNQSLA-------------HVFASAGSSNFASIWDLKAKK----EVIHLSYTSPNSGIKQQLSVVEWHPKN--  226 (416)
T ss_dssp             CCCCEEEECSSCT-------------TEEEEESSSSCEEEEETTTTE----EEEEECCCCCSSCCCCCEEEEEECSSC--
T ss_pred             CCeeEEEeCCCCC-------------cEEEEEcCCCCEEEEECCCCC----cceEEeccccccccCCceEEEEECCCC--
Confidence            8999999999842             689999999999999998763    33334433      7889999999984  


Q ss_pred             CCcEEEEEeCCC---cEEEEEeecCCCcccceEee-ccccCeEEEEeec-CCCEEEEEeCCCcEEEeEc
Q 036510          224 PKSTIASASEDG---KVIIWTVAREGDQWEGKVLH-DFKTPVYRVSWSL-TGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       224 ~~~~l~s~s~D~---~i~iw~~~~~~~~~~~~~~~-~~~~~i~~~~~sp-dg~~l~s~~~d~~v~~w~~  287 (288)
                       ..+|++++.|+   .|++||++.....  ...+. .|...|.+++|+| ++++|++++.|++|+|||+
T Consensus       227 -~~~l~~~~~d~~~~~i~~~d~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~  292 (416)
T 2pm9_A          227 -STRVATATGSDNDPSILIWDLRNANTP--LQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP  292 (416)
T ss_dssp             -TTEEEEEECCSSSCCCCEEETTSTTSC--SBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECS
T ss_pred             -CCEEEEEECCCCCceEEEEeCCCCCCC--cEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeC
Confidence             36899999999   9999998764221  23344 6778999999999 9999999999999999995

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2.3e-33  Score=238.91  Aligned_cols=247  Identities=21%  Similarity=0.365  Sum_probs=198.2

Q ss_pred             cccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecC
Q 036510            8 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEG   87 (288)
Q Consensus         8 ~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~   87 (288)
                      .+|...|.+++|+|+|++|++|+.|++|++|++..  ++.+..+.+|...+.++.+.    +.++++++.++.+++|+..
T Consensus        64 ~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~--~~~~~~~~~h~~~~~~~~~~----~~~l~s~~~~~~~~~~~~~  137 (318)
T 4ggc_A           64 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ--QKRLRNMTSHSARVGSLSWN----SYILSSGSRSGHIHHHDVR  137 (318)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEEE----TTEEEEEETTSEEEEEETT
T ss_pred             cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCC--ceeEEEecCccceEEEeecC----CCEEEEEecCCceEeeecC
Confidence            47889999999999999999999999999999854  47788999999999887764    6799999999999999986


Q ss_pred             CCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCe-eeEEeeccCCCCeeEEEeCCCCCCCce
Q 036510           88 NSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGW-DTSRIDQAHPVGVTSVSWAPSTAPGAL  166 (288)
Q Consensus        88 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~v~~i~~~p~~~~~~~  166 (288)
                      ....  ....+.+|...+.++.++++  +.++++++.|+.|++||++.+... ........|...|.++.++|.....  
T Consensus       138 ~~~~--~~~~~~~~~~~~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--  211 (318)
T 4ggc_A          138 VAEH--HVATLSGHSQEVCGLRWAPD--GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV--  211 (318)
T ss_dssp             SSSC--EEEEEECCSSCEEEEEECTT--SSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTE--
T ss_pred             CCce--eEEEEcCccCceEEEEEcCC--CCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcE--
Confidence            6543  44567789999999999987  678999999999999999865422 1223345677889999999986310  


Q ss_pred             ecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEE--eCCCcEEEEEeec
Q 036510          167 VGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASA--SEDGKVIIWTVAR  244 (288)
Q Consensus       167 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~--s~D~~i~iw~~~~  244 (288)
                               -.+++++.+++|++||......     .....+...+..+.|+|+.    ..++++  +.|++|++||++.
T Consensus       212 ---------~~~~~~~~~~~i~lwd~~~~~~-----~~~~~~~~~v~~~~~~~~~----~~~~~~sg~~d~~i~iwd~~~  273 (318)
T 4ggc_A          212 ---------LATGGGTSDRHIRIWNVCSGAC-----LSAVDAHSQVCSILWSPHY----KELISGHGFAQNQLVIWKYPT  273 (318)
T ss_dssp             ---------EEEEECTTTCEEEEEETTTCCE-----EEEEECSSCEEEEEEETTT----TEEEEEECTTTCCEEEEETTT
T ss_pred             ---------EEEEecCCCCEEEEEecccccc-----cccccceeeeeeeeecccc----cceEEEEEcCCCEEEEEECCC
Confidence                     1245778899999999876531     1224466679999999974    445544  4799999999875


Q ss_pred             CCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          245 EGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       245 ~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      .+   ....+.+|.++|++++|+|||++|++|+.|++|+|||+
T Consensus       274 ~~---~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~  313 (318)
T 4ggc_A          274 MA---KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC  313 (318)
T ss_dssp             CC---EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred             Cc---EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence            42   23456778899999999999999999999999999995

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.7e-35  Score=261.39  Aligned_cols=251  Identities=19%  Similarity=0.233  Sum_probs=166.1

Q ss_pred             cccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCc---eeeEEEeccccCeEEEEecC------CCCCCEEEEeeCCCc
Q 036510           10 HEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTS---QHLAKLSGHKGAVWEVAWAH------PKFGSILASCSFDGT   80 (288)
Q Consensus        10 h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~---~~~~~~~~h~~~v~~~~~~~------~~~~~~l~s~s~d~~   80 (288)
                      |...+....+++++++|++|+.|++|+|||...+..   ..+..+.||.+.|++++|++      +.++++|+|+|.|++
T Consensus        88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t  167 (393)
T 4gq1_A           88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT  167 (393)
T ss_dssp             ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred             cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence            344444444556778899999999999999865422   23445789999999999985      125789999999999


Q ss_pred             EEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeE------------------
Q 036510           81 VIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTS------------------  142 (288)
Q Consensus        81 v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~------------------  142 (288)
                      |+|||+.+..   ....+..|..+|.+++|+|++ ..++++|+.|++|++||++.+......                  
T Consensus       168 v~~Wd~~~~~---~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~  243 (393)
T 4gq1_A          168 LIIWRLTDEG---PILAGYPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP  243 (393)
T ss_dssp             EEEEEEETTE---EEEEEEECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGG
T ss_pred             EEEEECCCCc---eeeeecCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccc
Confidence            9999997654   334455688899999999984 457999999999999999865321110                  


Q ss_pred             ----EeeccCCCCeeEEEeC-CCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEe
Q 036510          143 ----RIDQAHPVGVTSVSWA-PSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAW  217 (288)
Q Consensus       143 ----~~~~~~~~~v~~i~~~-p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~  217 (288)
                          ....+|...+.++.|+ |++              ..+++++.|+++++||+..+.    ....+..|...+..+.+
T Consensus       244 ~~~~~~~~~~~~~v~~v~~~~~dg--------------~~l~s~s~d~~i~vwd~~~~~----~~~~l~~~~~~~~~~~~  305 (393)
T 4gq1_A          244 LVNTCHSSGIASSLANVRWIGSDG--------------SGILAMCKSGAWLRWNLFANN----DYNEISDSTMKLGPKNL  305 (393)
T ss_dssp             GC------CCSSSCSEEEEETTTT--------------CEEEEECTTSEEEEEEC-----------------------CC
T ss_pred             ceeeeecccccccceeeeeecCCC--------------CEEEEEeCCCCEEEEECccCC----CCceEeeecCccccEEE
Confidence                0123456667777765 443              789999999999999997652    22233444444444444


Q ss_pred             cCCCC----------------CCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCc
Q 036510          218 APNLG----------------LPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNN  281 (288)
Q Consensus       218 sp~~~----------------~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~  281 (288)
                      .|+..                ..+.++++|+.|++|++||+.....   .....++..+|.+++|||||++||+++.+| 
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~---~~~~~~~~~~V~svafspdG~~LA~as~~G-  381 (393)
T 4gq1_A          306 LPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDS---NSIPIQLGMPIVDFCWHQDGSHLAIATEGS-  381 (393)
T ss_dssp             SCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTC---CEEEEECSSCEEEEEECTTSSEEEEEESSE-
T ss_pred             ccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcE---EEEecCCCCcEEEEEEcCCCCEEEEEeCCC-
Confidence            44210                0234678889999999999875432   233456778999999999999999998766 


Q ss_pred             EEEeE
Q 036510          282 VTLWE  286 (288)
Q Consensus       282 v~~w~  286 (288)
                      +.||+
T Consensus       382 v~lvr  386 (393)
T 4gq1_A          382 VLLTR  386 (393)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            44554

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.6e-33  Score=242.71  Aligned_cols=256  Identities=16%  Similarity=0.219  Sum_probs=193.6

Q ss_pred             CccccccccceEEEEEcCC---CCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCc
Q 036510            4 QKIETGHEDTVHDVAMDYY---GKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGT   80 (288)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~---g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~   80 (288)
                      ..++.+|.+.|++++|+|+   |++|++|+.|++|++|++..........+.+|...|.+++|+++  +++|++++.|+.
T Consensus        32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~dg~  109 (368)
T 3mmy_A           32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDD--GSKVFTASCDKT  109 (368)
T ss_dssp             EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTT--SSEEEEEETTSE
T ss_pred             eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcC--CCEEEEEcCCCc
Confidence            3466799999999999999   69999999999999999965333444788999999999999864  889999999999


Q ss_pred             EEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCC
Q 036510           81 VIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPS  160 (288)
Q Consensus        81 v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~  160 (288)
                      |++||+.++.   . ..+..|...|.+++|+|...+.++++++.|+.|++||++.+......   ..+ ..+.++.+.+ 
T Consensus       110 v~iwd~~~~~---~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~-~~~~~~~~~~-  180 (368)
T 3mmy_A          110 AKMWDLSSNQ---A-IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVL---QLP-ERCYCADVIY-  180 (368)
T ss_dssp             EEEEETTTTE---E-EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEE---ECS-SCEEEEEEET-
T ss_pred             EEEEEcCCCC---c-eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEE---ecC-CCceEEEecC-
Confidence            9999997654   2 23456999999999944444788999999999999999876543322   222 3566666654 


Q ss_pred             CCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEE
Q 036510          161 TAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIW  240 (288)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw  240 (288)
                                     ..++.++.++.+++||+............  .+...+.++.+.++....+..+++++.|+.|++|
T Consensus       181 ---------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~  243 (368)
T 3mmy_A          181 ---------------PMAVVATAERGLIVYQLENQPSEFRRIES--PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH  243 (368)
T ss_dssp             ---------------TEEEEEEGGGCEEEEECSSSCEEEEECCC--SCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEE
T ss_pred             ---------------CeeEEEeCCCcEEEEEeccccchhhhccc--cccCCCceEEEcccCCCCCCeEEEecCCCcEEEE
Confidence                           34778888999999999876433333222  2333456666665432223459999999999999


Q ss_pred             EeecCCCcccceEeecccc------------CeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          241 TVAREGDQWEGKVLHDFKT------------PVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~------------~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      +++..........+..+..            +|.+++|+|+|++|++|+.|+.|+|||+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~  302 (368)
T 3mmy_A          244 YINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDK  302 (368)
T ss_dssp             ESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred             ecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEEC
Confidence            9976432122233344443            6999999999999999999999999995

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-33  Score=249.40  Aligned_cols=245  Identities=16%  Similarity=0.271  Sum_probs=190.5

Q ss_pred             ccccceEEEEEcCCCC-EEEEeeCCCcEEEEEe----CCCCc----eeeEEEec----------cccCeEEEEecCCCCC
Q 036510            9 GHEDTVHDVAMDYYGK-RLATASSDYSIKIIGV----GNNTS----QHLAKLSG----------HKGAVWEVAWAHPKFG   69 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~-~l~s~~~d~~i~lwd~----~~~~~----~~~~~~~~----------h~~~v~~~~~~~~~~~   69 (288)
                      .|.+.|.+++|+|+|+ +|++|+.|++|++|++    ..+..    .....+..          |...|.+++|+++  +
T Consensus        43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~  120 (425)
T 1r5m_A           43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD--G  120 (425)
T ss_dssp             EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT--S
T ss_pred             eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC--C
Confidence            4569999999999999 9999999999999999    54321    02333333          6889999999864  8


Q ss_pred             CEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeE-------
Q 036510           70 SILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTS-------  142 (288)
Q Consensus        70 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~-------  142 (288)
                      .+|++++.|+.|++|+. ++.   ....+..|...|.+++|+|+  +.++++++.|+.|++||++.+......       
T Consensus       121 ~~l~~~~~dg~i~i~~~-~~~---~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  194 (425)
T 1r5m_A          121 NSIVTGVENGELRLWNK-TGA---LLNVLNFHRAPIVSVKWNKD--GTHIISMDVENVTILWNVISGTVMQHFELKETGG  194 (425)
T ss_dssp             SEEEEEETTSCEEEEET-TSC---EEEEECCCCSCEEEEEECTT--SSEEEEEETTCCEEEEETTTTEEEEEECCC----
T ss_pred             CEEEEEeCCCeEEEEeC-CCC---eeeeccCCCccEEEEEECCC--CCEEEEEecCCeEEEEECCCCcEEEEeeccccCc
Confidence            99999999999999993 333   44567789999999999997  567899999999999998754221110       


Q ss_pred             ----------------------------------------------EeeccCCCCeeEEEeCCCCCCCceecccccCCCc
Q 036510          143 ----------------------------------------------RIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQ  176 (288)
Q Consensus       143 ----------------------------------------------~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~  176 (288)
                                                                    .....|...|.++.|+|++              .
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~--------------~  260 (425)
T 1r5m_A          195 SSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN--------------K  260 (425)
T ss_dssp             -----------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT--------------T
T ss_pred             cceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC--------------C
Confidence                                                          0112344455555555544              7


Q ss_pred             eeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeec
Q 036510          177 KLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHD  256 (288)
Q Consensus       177 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~  256 (288)
                      +|++++.|+.|++||+..+    +....+.+|...|.++.|+|+    + +|++++.|+.|++||+....   ....+..
T Consensus       261 ~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~----~-~l~~~~~d~~i~i~d~~~~~---~~~~~~~  328 (425)
T 1r5m_A          261 LLLSASDDGTLRIWHGGNG----NSQNCFYGHSQSIVSASWVGD----D-KVISCSMDGSVRLWSLKQNT---LLALSIV  328 (425)
T ss_dssp             EEEEEETTSCEEEECSSSB----SCSEEECCCSSCEEEEEEETT----T-EEEEEETTSEEEEEETTTTE---EEEEEEC
T ss_pred             EEEEEcCCCEEEEEECCCC----ccceEecCCCccEEEEEECCC----C-EEEEEeCCCcEEEEECCCCc---EeEeccc
Confidence            8999999999999998765    345566789999999999997    3 89999999999999986432   2234456


Q ss_pred             cccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          257 FKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       257 ~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      +..+|.+++|+|+|++|++++.|+.|+|||+
T Consensus       329 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~  359 (425)
T 1r5m_A          329 DGVPIFAGRISQDGQKYAVAFMDGQVNVYDL  359 (425)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred             CCccEEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence            6789999999999999999999999999995

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.2e-33  Score=253.77  Aligned_cols=244  Identities=21%  Similarity=0.280  Sum_probs=201.7

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      .+.+|++.|.+++|++++ +|++|+.|++|++||+..  ++.+..+.+|...|.+++|++.+++.+|++++.|++|++||
T Consensus       157 ~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd  233 (464)
T 3v7d_B          157 QLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK--GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK  233 (464)
T ss_dssp             EECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEE
T ss_pred             EEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCC--CcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEee
Confidence            355899999999999988 999999999999999854  46788899999999999998644578999999999999999


Q ss_pred             cCCCCceE--------------------EeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEee
Q 036510           86 EGNSNEWI--------------------KDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRID  145 (288)
Q Consensus        86 ~~~~~~~~--------------------~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~  145 (288)
                      +.......                    ....+.+|...|.++.  |+  +.++++|+.|+.|++||+++..   .....
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~--~~~l~~~~~d~~i~vwd~~~~~---~~~~~  306 (464)
T 3v7d_B          234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--GH--GNIVVSGSYDNTLIVWDVAQMK---CLYIL  306 (464)
T ss_dssp             CCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--EE--TTEEEEEETTSCEEEEETTTTE---EEEEE
T ss_pred             CCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--CC--CCEEEEEeCCCeEEEEECCCCc---EEEEe
Confidence            87643211                    1345678888898885  43  4579999999999999998643   33455


Q ss_pred             ccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCC
Q 036510          146 QAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPK  225 (288)
Q Consensus       146 ~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~  225 (288)
                      .+|...|.++.|+|++              ..+++|+.|++|++||++++    +++..+.+|...|.++.|++      
T Consensus       307 ~~~~~~v~~~~~~~~~--------------~~l~sg~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~------  362 (464)
T 3v7d_B          307 SGHTDRIYSTIYDHER--------------KRCISASMDTTIRIWDLENG----ELMYTLQGHTALVGLLRLSD------  362 (464)
T ss_dssp             CCCSSCEEEEEEETTT--------------TEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECS------
T ss_pred             cCCCCCEEEEEEcCCC--------------CEEEEEeCCCcEEEEECCCC----cEEEEEeCCCCcEEEEEEcC------
Confidence            6899999999999987              78999999999999999876    45667889999999999985      


Q ss_pred             cEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEcC
Q 036510          226 STIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA  288 (288)
Q Consensus       226 ~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~~  288 (288)
                      .+|++|+.|++|++||+.....    .....+...+..++|+|+++++++|+ |+.|+|||++
T Consensus       363 ~~l~s~s~dg~v~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~  420 (464)
T 3v7d_B          363 KFLVSAAADGSIRGWDANDYSR----KFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLR  420 (464)
T ss_dssp             SEEEEEETTSEEEEEETTTCCE----EEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETT
T ss_pred             CEEEEEeCCCcEEEEECCCCce----eeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECC
Confidence            4799999999999999875321    12223455678899999999999998 8999999953

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.6e-33  Score=239.34  Aligned_cols=223  Identities=24%  Similarity=0.339  Sum_probs=178.3

Q ss_pred             ccccccccceEEEEEcC--CCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEE
Q 036510            5 KIETGHEDTVHDVAMDY--YGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVI   82 (288)
Q Consensus         5 ~~~~~h~~~v~~~~~s~--~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~   82 (288)
                      ..+.+|++.|.+++|++  +|++|+||+.|++|++||+..+....+..+.+|...|.+++|+++..+.+|++++.|++|+
T Consensus        47 ~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~  126 (297)
T 2pm7_B           47 DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVS  126 (297)
T ss_dssp             EEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEE
T ss_pred             EEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEE
Confidence            34679999999999986  3899999999999999999654434567788999999999998653478999999999999


Q ss_pred             EeecCCCCceEEeEEeecCCCceeEEEeccCC-----------CCeEEEEEeCCCcEEEEeecCCCC-eeeEEeeccCCC
Q 036510           83 IWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHE-----------LGLCLACGSSDGNISVFTARADGG-WDTSRIDQAHPV  150 (288)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-----------~~~~l~sg~~d~~i~i~d~~~~~~-~~~~~~~~~~~~  150 (288)
                      +||++..... ....+.+|...|.+++|+|+.           .+.++++|+.|++|++||++.+.. +.....+.+|..
T Consensus       127 ~wd~~~~~~~-~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~  205 (297)
T 2pm7_B          127 VVEFKENGTT-SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD  205 (297)
T ss_dssp             EEEBCSSSCB-CCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS
T ss_pred             EEEecCCCce-eeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC
Confidence            9999765322 124567899999999999973           145899999999999999986543 223345678999


Q ss_pred             CeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCce--eeeeeeccccCCcceEEEEecCCCCCCCcEE
Q 036510          151 GVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIW--KMDCFPALQMHTDWVRDVAWAPNLGLPKSTI  228 (288)
Q Consensus       151 ~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l  228 (288)
                      .|.+++|+|++..           +.+|++++.|++|+|||+.....  ....+ ....|...|.+++|+|++    .+|
T Consensus       206 ~V~~v~~sp~~~~-----------~~~las~s~D~~v~iWd~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~g----~~l  269 (297)
T 2pm7_B          206 WVRDVAWSPTVLL-----------RSYMASVSQDRTCIIWTQDNEQGPWKKTLL-KEEKFPDVLWRASWSLSG----NVL  269 (297)
T ss_dssp             CEEEEEECCCCSS-----------SEEEEEEETTSCEEEEEESSTTSCCEEEES-SSSCCSSCEEEEEECSSS----CCE
T ss_pred             ceEEEEECCCCCC-----------ceEEEEEECCCcEEEEEeCCCCCccceeee-ecccCCCcEEEEEECCCC----CEE
Confidence            9999999998410           16799999999999999976421  11111 125688899999999984    689


Q ss_pred             EEEeCCCcEEEEEeec
Q 036510          229 ASASEDGKVIIWTVAR  244 (288)
Q Consensus       229 ~s~s~D~~i~iw~~~~  244 (288)
                      |+++.|++|++|+...
T Consensus       270 as~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          270 ALSGGDNKVTLWKENL  285 (297)
T ss_dssp             EEEETTSCEEEEEECT
T ss_pred             EEEcCCCcEEEEEECC
Confidence            9999999999999764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=5.8e-34  Score=251.70  Aligned_cols=250  Identities=16%  Similarity=0.247  Sum_probs=196.4

Q ss_pred             cccccccceEEEEEcC-CCCEEEEeeCCCcEEEEEeCCCCc-----eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCC
Q 036510            6 IETGHEDTVHDVAMDY-YGKRLATASSDYSIKIIGVGNNTS-----QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDG   79 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~-~g~~l~s~~~d~~i~lwd~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~   79 (288)
                      .+.+|.+.|.+++|+| ++++|++|+.|++|++|++.....     +.+..+.+|...|.+++|+++ ...+|++++.|+
T Consensus        76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~-~~~~l~s~~~dg  154 (402)
T 2aq5_A           76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPT-AQNVLLSAGCDN  154 (402)
T ss_dssp             CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSS-BTTEEEEEETTS
T ss_pred             eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcC-CCCEEEEEcCCC
Confidence            4668999999999999 899999999999999999864321     457888999999999999864 236999999999


Q ss_pred             cEEEeecCCCCceEEeEEe--ecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCC-eeEEE
Q 036510           80 TVIIWKEGNSNEWIKDHVF--EDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVG-VTSVS  156 (288)
Q Consensus        80 ~v~iwd~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-v~~i~  156 (288)
                      +|++||+.++.   ....+  ..|...|.+++|+|+  +.++++++.|+.|++||++.+..  .......|... +.++.
T Consensus       155 ~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~  227 (402)
T 2aq5_A          155 VILVWDVGTGA---AVLTLGPDVHPDTIYSVDWSRD--GALICTSCRDKRVRVIEPRKGTV--VAEKDRPHEGTRPVHAV  227 (402)
T ss_dssp             CEEEEETTTTE---EEEEECTTTCCSCEEEEEECTT--SSCEEEEETTSEEEEEETTTTEE--EEEEECSSCSSSCCEEE
T ss_pred             EEEEEECCCCC---ccEEEecCCCCCceEEEEECCC--CCEEEEEecCCcEEEEeCCCCce--eeeeccCCCCCcceEEE
Confidence            99999998754   34556  679999999999997  66789999999999999987532  12222567655 89999


Q ss_pred             eCCCCCCCceecccccCCCceeEEe---ecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEE-EEEe
Q 036510          157 WAPSTAPGALVGSGFLDPVQKLCSG---GCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTI-ASAS  232 (288)
Q Consensus       157 ~~p~~~~~~~~~~~~~~~~~~l~s~---~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l-~s~s  232 (288)
                      |+|++              .+|++|   +.|+.|++||+++.......  ....|...|.++.|+|++    .+| ++|+
T Consensus       228 ~~~~~--------------~~l~~g~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~v~~~~~s~~~----~~l~~~g~  287 (402)
T 2aq5_A          228 FVSEG--------------KILTTGFSRMSERQVALWDTKHLEEPLSL--QELDTSSGVLLPFFDPDT----NIVYLCGK  287 (402)
T ss_dssp             ECSTT--------------EEEEEEECTTCCEEEEEEETTBCSSCSEE--EECCCCSSCEEEEEETTT----TEEEEEET
T ss_pred             EcCCC--------------cEEEEeccCCCCceEEEEcCccccCCceE--EeccCCCceeEEEEcCCC----CEEEEEEc
Confidence            99986              678888   78999999999765321111  112466779999999984    456 4666


Q ss_pred             CCCcEEEEEeecCCCcccceEee--ccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          233 EDGKVIIWTVAREGDQWEGKVLH--DFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       233 ~D~~i~iw~~~~~~~~~~~~~~~--~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      .|+.|++|++......  ...+.  .+..+|.+++|+|++.++++  .++.+++|++
T Consensus       288 ~dg~i~i~d~~~~~~~--~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l  340 (402)
T 2aq5_A          288 GDSSIRYFEITSEAPF--LHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKL  340 (402)
T ss_dssp             TCSCEEEEEECSSTTC--EEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEE
T ss_pred             CCCeEEEEEecCCCcc--eEeecccccCCcccceEEeccccccee--cceeEEEEEc
Confidence            8999999999864321  12233  34588999999999999864  5679999984

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=7.3e-34  Score=247.50  Aligned_cols=205  Identities=25%  Similarity=0.374  Sum_probs=174.8

Q ss_pred             ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510            7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE   86 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~   86 (288)
                      +.+|...|.+++|+|++++|++++.|++|++||+..  ++.+..+.+|...|.+++|++..++.+|++|+.|++|++||+
T Consensus       150 ~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~  227 (354)
T 2pbi_B          150 VAMHTNYLSACSFTNSDMQILTASGDGTCALWDVES--GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM  227 (354)
T ss_dssp             EEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEET
T ss_pred             eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCC--CeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEEC
Confidence            457999999999999999999999999999999854  467889999999999999987556789999999999999999


Q ss_pred             CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCce
Q 036510           87 GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGAL  166 (288)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~  166 (288)
                      +++.   ....+..|...|++++|+|+  +.++++|+.|++|++||++........ ....+...+.++.|+|++     
T Consensus       228 ~~~~---~~~~~~~h~~~v~~v~~~p~--~~~l~s~s~D~~v~lwd~~~~~~~~~~-~~~~~~~~~~~~~~s~~g-----  296 (354)
T 2pbi_B          228 RSGQ---CVQAFETHESDVNSVRYYPS--GDAFASGSDDATCRLYDLRADREVAIY-SKESIIFGASSVDFSLSG-----  296 (354)
T ss_dssp             TTCC---EEEEECCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTTEEEEEE-CCTTCCSCEEEEEECTTS-----
T ss_pred             CCCc---EEEEecCCCCCeEEEEEeCC--CCEEEEEeCCCeEEEEECCCCcEEEEE-cCCCcccceeEEEEeCCC-----
Confidence            8765   45567889999999999998  578999999999999999865322111 112334578899999987     


Q ss_pred             ecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEE
Q 036510          167 VGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT  241 (288)
Q Consensus       167 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~  241 (288)
                               .+|++|+.|++|++||+.++    +.+..+.+|...|.+++|+|++    .+|++|+.|++|++|+
T Consensus       297 ---------~~l~~g~~d~~i~vwd~~~~----~~~~~l~~h~~~v~~l~~spdg----~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          297 ---------RLLFAGYNDYTINVWDVLKG----SRVSILFGHENRVSTLRVSPDG----TAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             ---------SEEEEEETTSCEEEEETTTC----SEEEEECCCSSCEEEEEECTTS----SCEEEEETTSEEEEEC
T ss_pred             ---------CEEEEEECCCcEEEEECCCC----ceEEEEECCCCcEEEEEECCCC----CEEEEEcCCCCEEecC
Confidence                     78999999999999999776    3455678999999999999984    6899999999999995

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-33  Score=236.96  Aligned_cols=239  Identities=20%  Similarity=0.267  Sum_probs=196.9

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCC-CceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNN-TSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW   84 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw   84 (288)
                      ...+|...|.+++|+|++++|++++.|+.+++|++... ..+.+..+.+|...|.+++|.    +.+|++++.|+.|++|
T Consensus        54 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~~~~~d~~i~~~  129 (313)
T 3odt_A           54 VVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ----DGVVISGSWDKTAKVW  129 (313)
T ss_dssp             EEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE----TTEEEEEETTSEEEEE
T ss_pred             EeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec----CCEEEEEeCCCCEEEE
Confidence            34578999999999999999999999999999998543 335577889999999999993    6799999999999999


Q ss_pred             ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeecc-CCCCeeEEEeCCCCCC
Q 036510           85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQA-HPVGVTSVSWAPSTAP  163 (288)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~v~~i~~~p~~~~  163 (288)
                      |.  ..   ....+..|...+.++.|+|.. +.++++++.|+.|++||...     ....... |...+.++.|+|++  
T Consensus       130 d~--~~---~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~~~~i~~~~~~~~~--  196 (313)
T 3odt_A          130 KE--GS---LVYNLQAHNASVWDAKVVSFS-ENKFLTASADKTIKLWQNDK-----VIKTFSGIHNDVVRHLAVVDDG--  196 (313)
T ss_dssp             ET--TE---EEEEEECCSSCEEEEEEEETT-TTEEEEEETTSCEEEEETTE-----EEEEECSSCSSCEEEEEEEETT--
T ss_pred             cC--Cc---EEEecccCCCceeEEEEccCC-CCEEEEEECCCCEEEEecCc-----eEEEEeccCcccEEEEEEcCCC--
Confidence            92  22   445677899999999999842 56789999999999999432     2223333 88899999999986  


Q ss_pred             CceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEee
Q 036510          164 GALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA  243 (288)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~  243 (288)
                                  . +++++.|+.|++||++++    +.+..+.+|...|.+++|+|++     +|++++.|+.|++||+.
T Consensus       197 ------------~-~~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~-----~l~~~~~dg~v~iwd~~  254 (313)
T 3odt_A          197 ------------H-FISCSNDGLIKLVDMHTG----DVLRTYEGHESFVYCIKLLPNG-----DIVSCGEDRTVRIWSKE  254 (313)
T ss_dssp             ------------E-EEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEECTTS-----CEEEEETTSEEEEECTT
T ss_pred             ------------e-EEEccCCCeEEEEECCch----hhhhhhhcCCceEEEEEEecCC-----CEEEEecCCEEEEEECC
Confidence                        4 889999999999999876    3556678899999999999973     59999999999999987


Q ss_pred             cCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          244 REGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       244 ~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ...   ....+..+..+|.+++|+|+|+ +++++.|+.|++||+
T Consensus       255 ~~~---~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~  294 (313)
T 3odt_A          255 NGS---LKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQ  294 (313)
T ss_dssp             TCC---EEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEES
T ss_pred             CCc---eeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeC
Confidence            542   2234456677999999999999 567999999999995

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4e-34  Score=251.34  Aligned_cols=219  Identities=22%  Similarity=0.348  Sum_probs=178.3

Q ss_pred             ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeC
Q 036510           45 SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSS  124 (288)
Q Consensus        45 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~  124 (288)
                      ..+..++.+|.+.|++++|+++  +.+|+|||.|++|+|||..++.   ....+..|...|.+++|+|+  +.++++|+.
T Consensus        56 ~~~~~~l~gH~~~V~~~~~sp~--~~~l~s~s~D~~v~iWd~~~~~---~~~~~~~h~~~v~~~~~s~~--g~~las~~~  128 (380)
T 3iz6_a           56 LVCCRTLQGHSGKVYSLDWTPE--KNWIVSASQDGRLIVWNALTSQ---KTHAIKLHCPWVMECAFAPN--GQSVACGGL  128 (380)
T ss_dssp             CEEEEEECCCSSCEEEEEECTT--SSCEEEEETTSEEEEEETTTTE---EEEEEECCCTTCCCCEECTT--SSEEEECCS
T ss_pred             eEEeecccccccEEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCc---cceEEecCCCCEEEEEECCC--CCEEEEeeC
Confidence            4667889999999999999874  8999999999999999987654   45677889999999999998  678999999


Q ss_pred             CCcEEEEeecCCC----CeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeee
Q 036510          125 DGNISVFTARADG----GWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMD  200 (288)
Q Consensus       125 d~~i~i~d~~~~~----~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  200 (288)
                      |+.+++|++....    .........+|...+.++.|.|+..             ..|++|+.|++|++||+.++.....
T Consensus       129 d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~-------------~~l~s~s~D~~i~~wd~~~~~~~~~  195 (380)
T 3iz6_a          129 DSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE-------------TRLITGSGDQTCVLWDVTTGQRISI  195 (380)
T ss_dssp             SSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSS-------------SCEEEECTTSCEEEECTTTCCEEEE
T ss_pred             CCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCC-------------CEEEEECCCCcEEEEEcCCCcEEEE
Confidence            9999999986421    1112234568988999999998752             5799999999999999988642211


Q ss_pred             ee-eccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCC
Q 036510          201 CF-PALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGN  279 (288)
Q Consensus       201 ~~-~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d  279 (288)
                      .. ....+|...|.++.|+|..   +.+|++|+.|++|++||++....  ....+.+|...|.+++|+|+|++|++|+.|
T Consensus       196 ~~~~~~~~h~~~v~~~~~~~~~---~~~l~sgs~D~~v~~wd~~~~~~--~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D  270 (380)
T 3iz6_a          196 FGSEFPSGHTADVLSLSINSLN---ANMFISGSCDTTVRLWDLRITSR--AVRTYHGHEGDINSVKFFPDGQRFGTGSDD  270 (380)
T ss_dssp             ECCCSSSSCCSCEEEEEECSSS---CCEEEEEETTSCEEEEETTTTCC--CCEEECCCSSCCCEEEECTTSSEEEEECSS
T ss_pred             eecccCCCCccCeEEEEeecCC---CCEEEEEECCCeEEEEECCCCCc--ceEEECCcCCCeEEEEEecCCCeEEEEcCC
Confidence            10 1126799999999998842   47899999999999999874322  234567788999999999999999999999


Q ss_pred             CcEEEeEcC
Q 036510          280 NNVTLWEEA  288 (288)
Q Consensus       280 ~~v~~w~~~  288 (288)
                      ++|+|||++
T Consensus       271 ~~i~lwd~~  279 (380)
T 3iz6_a          271 GTCRLFDMR  279 (380)
T ss_dssp             SCEEEEETT
T ss_pred             CeEEEEECC
Confidence            999999963

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.2e-32  Score=244.21  Aligned_cols=233  Identities=18%  Similarity=0.291  Sum_probs=197.3

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCC
Q 036510            9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN   88 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~   88 (288)
                      +|...|.++++  ++++|++|+.|++|++||...  ++.+..+.+|...|.+++|.    +++|++|+.||+|++||+.+
T Consensus       131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~l~~~----~~~l~sg~~dg~i~vwd~~~  202 (435)
T 1p22_A          131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNT--LECKRILTGHTGSVLCLQYD----ERVIITGSSDSTVRVWDVNT  202 (435)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSS--CCEEEEECCCSSCEEEEECC----SSEEEEEETTSCEEEEESSS
T ss_pred             CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCC--CeEEEEEcCCCCcEEEEEEC----CCEEEEEcCCCeEEEEECCC
Confidence            56778887766  799999999999999999853  46788899999999999982    78999999999999999987


Q ss_pred             CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceec
Q 036510           89 SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG  168 (288)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~  168 (288)
                      +.   ....+..|...|.+++|+++    ++++|+.|+.|++||++.+..........+|...|.++.|.  +       
T Consensus       203 ~~---~~~~~~~h~~~v~~l~~~~~----~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~-------  266 (435)
T 1p22_A          203 GE---MLNTLIHHCEAVLHLRFNNG----MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--D-------  266 (435)
T ss_dssp             CC---EEEEECCCCSCEEEEECCTT----EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--T-------
T ss_pred             Cc---EEEEEcCCCCcEEEEEEcCC----EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC--C-------
Confidence            65   45667789999999999753    68999999999999998765544445667899999999983  2       


Q ss_pred             ccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCc
Q 036510          169 SGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ  248 (288)
Q Consensus       169 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~  248 (288)
                             +++++|+.|+.|++||++++    +++..+.+|...|.++.|++      .+|++|+.|++|++||++...  
T Consensus       267 -------~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~------~~l~~g~~dg~i~iwd~~~~~--  327 (435)
T 1p22_A          267 -------KYIVSASGDRTIKVWNTSTC----EFVRTLNGHKRGIACLQYRD------RLVVSGSSDNTIRLWDIECGA--  327 (435)
T ss_dssp             -------TEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEEET------TEEEEEETTSCEEEEETTTCC--
T ss_pred             -------CEEEEEeCCCeEEEEECCcC----cEEEEEcCCCCcEEEEEeCC------CEEEEEeCCCeEEEEECCCCC--
Confidence                   67999999999999999876    45667788999999999964      489999999999999987532  


Q ss_pred             ccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          249 WEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       249 ~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                       ....+..|...|.+++|  ++++|++|+.||+|++||+
T Consensus       328 -~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~  363 (435)
T 1p22_A          328 -CLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDL  363 (435)
T ss_dssp             -EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEH
T ss_pred             -EEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEEC
Confidence             22445667889999999  8999999999999999995

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=5e-33  Score=248.37  Aligned_cols=239  Identities=23%  Similarity=0.442  Sum_probs=198.9

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      .+.+|...|.+++|  ++++|++|+.|++|++||+..  ++.+..+.+|...|.+++|+    +.+|++++.|++|++||
T Consensus       168 ~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~vwd  239 (435)
T 1p22_A          168 ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT--GEMLNTLIHHCEAVLHLRFN----NGMMVTCSKDRSIAVWD  239 (435)
T ss_dssp             EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS--CCEEEEECCCCSCEEEEECC----TTEEEEEETTSCEEEEE
T ss_pred             EEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC--CcEEEEEcCCCCcEEEEEEc----CCEEEEeeCCCcEEEEe
Confidence            45689999999988  689999999999999999864  36788899999999999995    46999999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      +.+.........+.+|...|.+++|.    +.++++|+.|+.|++||++++..   .....+|...|.++.|++      
T Consensus       240 ~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~------  306 (435)
T 1p22_A          240 MASPTDITLRRVLVGHRAAVNVVDFD----DKYIVSASGDRTIKVWNTSTCEF---VRTLNGHKRGIACLQYRD------  306 (435)
T ss_dssp             CSSSSCCEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTTCCE---EEEEECCSSCEEEEEEET------
T ss_pred             CCCCCCceeeeEecCCCCcEEEEEeC----CCEEEEEeCCCeEEEEECCcCcE---EEEEcCCCCcEEEEEeCC------
Confidence            98766544445677899999999993    45789999999999999987542   344567888999998853      


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE  245 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~  245 (288)
                                .++++|+.|+.|++||++++    +++..+.+|...|.++.|.+      .+|++|+.|+.|++||+...
T Consensus       307 ----------~~l~~g~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~~------~~l~sg~~dg~i~vwd~~~~  366 (435)
T 1p22_A          307 ----------RLVVSGSSDNTIRLWDIECG----ACLRVLEGHEELVRCIRFDN------KRIVSGAYDGKIKVWDLVAA  366 (435)
T ss_dssp             ----------TEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEECCS------SEEEEEETTSCEEEEEHHHH
T ss_pred             ----------CEEEEEeCCCeEEEEECCCC----CEEEEEeCCcCcEEEEEecC------CEEEEEeCCCcEEEEECCCC
Confidence                      57999999999999999876    45667789999999999943      58999999999999998754


Q ss_pred             CCcc------cceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          246 GDQW------EGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       246 ~~~~------~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ....      ....+..|.++|.+++|  ++++|++|+.||+|++||+
T Consensus       367 ~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~  412 (435)
T 1p22_A          367 LDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDF  412 (435)
T ss_dssp             TSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-
T ss_pred             CCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEEC
Confidence            3110      22345677889999999  8999999999999999995

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=7.6e-34  Score=253.84  Aligned_cols=214  Identities=18%  Similarity=0.199  Sum_probs=171.4

Q ss_pred             eEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCc
Q 036510           48 LAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGN  127 (288)
Q Consensus        48 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~  127 (288)
                      .....+|...|++|+|+|. ++.+||+|+.||+|+|||+..+... ....+.+|.+.|++|+|+|.+ +.+|++|+.|++
T Consensus       112 ~~~~~~~~~~V~~l~~~P~-~~~~lasGs~dg~i~lWd~~~~~~~-~~~~~~gH~~~V~~l~f~p~~-~~~l~s~s~D~~  188 (435)
T 4e54_B          112 LQKAAPFDRRATSLAWHPT-HPSTVAVGSKGGDIMLWNFGIKDKP-TFIKGIGAGGSITGLKFNPLN-TNQFYASSMEGT  188 (435)
T ss_dssp             CCEEEECSSCEEEEEECSS-CTTCEEEEETTSCEEEECSSCCSCC-EEECCCSSSCCCCEEEECSSC-TTEEEEECSSSC
T ss_pred             cccCCCCCCCEEEEEEeCC-CCCEEEEEeCCCEEEEEECCCCCce-eEEEccCCCCCEEEEEEeCCC-CCEEEEEeCCCE
Confidence            4556789999999999753 5789999999999999998765432 333456899999999999954 567999999999


Q ss_pred             EEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecccc
Q 036510          128 ISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQM  207 (288)
Q Consensus       128 i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  207 (288)
                      |++||++.. ..........+...+.++.|+|++              .+|++|+.|+.|++||++..     .+..+.+
T Consensus       189 v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------------~~l~~g~~dg~i~~wd~~~~-----~~~~~~~  248 (435)
T 4e54_B          189 TRLQDFKGN-ILRVFASSDTINIWFCSLDVSASS--------------RMVVTGDNVGNVILLNMDGK-----ELWNLRM  248 (435)
T ss_dssp             EEEEETTSC-EEEEEECCSSCSCCCCCEEEETTT--------------TEEEEECSSSBEEEEESSSC-----BCCCSBC
T ss_pred             EEEeeccCC-ceeEEeccCCCCccEEEEEECCCC--------------CEEEEEeCCCcEeeeccCcc-----eeEEEec
Confidence            999999753 222222223345568889999987              78999999999999998653     4567889


Q ss_pred             CCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          208 HTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       208 h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      |...|.+++|+|+.   ..+|++|+.|++|++||++............+|..+|++++|+|||++|++++.|++|+|||.
T Consensus       249 h~~~v~~v~~~p~~---~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~  325 (435)
T 4e54_B          249 HKKKVTHVALNPCC---DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSA  325 (435)
T ss_dssp             CSSCEEEEEECTTC---SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEES
T ss_pred             ccceEEeeeecCCC---ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEEC
Confidence            99999999999985   458999999999999998764322222223467789999999999999999999999999995

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=7.1e-33  Score=276.10  Aligned_cols=267  Identities=19%  Similarity=0.267  Sum_probs=205.3

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      .+.+|.+.|.+++|+|+|++|++|+.|++|++||+..  ++.+..+.+|...|++++|+++.++.++++++.|++|++||
T Consensus       652 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd  729 (1249)
T 3sfz_A          652 DIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT--GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD  729 (1249)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEE
T ss_pred             EeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC--CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEE
Confidence            3458999999999999999999999999999999854  46788999999999999998765677999999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEe----------eccCCCCeeEE
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRI----------DQAHPVGVTSV  155 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~----------~~~~~~~v~~i  155 (288)
                      +.++.   ....+.+|...|++++|+|+  +.++++|+.||.|++||++.+........          ...+...+.++
T Consensus       730 ~~~~~---~~~~~~~h~~~v~~~~~sp~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  804 (1249)
T 3sfz_A          730 LNQKE---CRNTMFGHTNSVNHCRFSPD--DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCC  804 (1249)
T ss_dssp             TTSSS---EEEEECCCSSCEEEEEECSS--TTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCC
T ss_pred             CCCcc---hhheecCCCCCEEEEEEecC--CCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEE
Confidence            98765   45567789999999999998  66899999999999999876432111110          00112234555


Q ss_pred             EeCCCCCC----------------------------CceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecccc
Q 036510          156 SWAPSTAP----------------------------GALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQM  207 (288)
Q Consensus       156 ~~~p~~~~----------------------------~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  207 (288)
                      .|+|++..                            +.+....+..++.++++++.|+.|++||+.++    ..+..+.+
T Consensus       805 ~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~----~~~~~~~~  880 (1249)
T 3sfz_A          805 SWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR----LKVADCRG  880 (1249)
T ss_dssp             CBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT----EEEEEECC
T ss_pred             EECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC----ceeeecCC
Confidence            55555421                            00111223334578999999999999999876    34566789


Q ss_pred             CCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCC----------------------------------------
Q 036510          208 HTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGD----------------------------------------  247 (288)
Q Consensus       208 h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~----------------------------------------  247 (288)
                      |...|.++.|+|++    .+|++++.|++|++|++.....                                        
T Consensus       881 h~~~v~~v~~spdg----~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  956 (1249)
T 3sfz_A          881 HLSWVHGVMFSPDG----SSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI  956 (1249)
T ss_dssp             CSSCEEEEEECTTS----SEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCE
T ss_pred             CccceEEEEECCCC----CEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceE
Confidence            99999999999974    6899999999999999642100                                        


Q ss_pred             ------------------------------------cccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          248 ------------------------------------QWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       248 ------------------------------------~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                                                          .........|...|.+++|+|+|++|++++.|++|++||.
T Consensus       957 ~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~ 1032 (1249)
T 3sfz_A          957 DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW 1032 (1249)
T ss_dssp             EEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEET
T ss_pred             EEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence                                                0000112345678899999999999999999999999985

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.7e-32  Score=242.45  Aligned_cols=241  Identities=22%  Similarity=0.345  Sum_probs=192.1

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEec-cccCeEEEEecCCCCCCEEEEeeCCCcEEEeecC
Q 036510            9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSG-HKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEG   87 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~   87 (288)
                      +|.+.++..++++++..+++++.|++|++|++..+  +....+.. |...|.+++|+++  +.+|++++.||.|++||+.
T Consensus        89 ~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~--~~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i~iwd~~  164 (401)
T 4aez_A           89 GIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSG--SVSALAETDESTYVASVKWSHD--GSFLSVGLGNGLVDIYDVE  164 (401)
T ss_dssp             TCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTC--CEEEEEECCTTCCEEEEEECTT--SSEEEEEETTSCEEEEETT
T ss_pred             CCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCC--cEeEeeecCCCCCEEEEEECCC--CCEEEEECCCCeEEEEECc
Confidence            56555444334444567889999999999998654  34444444 8899999999864  8999999999999999997


Q ss_pred             CCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCcee
Q 036510           88 NSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV  167 (288)
Q Consensus        88 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~  167 (288)
                      ++.   ....+..|...|.+++|++    .++++|+.|+.|++||++....  ......+|...|.++.|+|++      
T Consensus       165 ~~~---~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~------  229 (401)
T 4aez_A          165 SQT---KLRTMAGHQARVGCLSWNR----HVLSSGSRSGAIHHHDVRIANH--QIGTLQGHSSEVCGLAWRSDG------  229 (401)
T ss_dssp             TCC---EEEEECCCSSCEEEEEEET----TEEEEEETTSEEEEEETTSSSC--EEEEEECCSSCEEEEEECTTS------
T ss_pred             CCe---EEEEecCCCCceEEEEECC----CEEEEEcCCCCEEEEecccCcc--eeeEEcCCCCCeeEEEEcCCC------
Confidence            665   4556778999999999964    4789999999999999985433  234556899999999999986      


Q ss_pred             cccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEe--CCCcEEEEEeecC
Q 036510          168 GSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASAS--EDGKVIIWTVARE  245 (288)
Q Consensus       168 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s--~D~~i~iw~~~~~  245 (288)
                              .+|++++.|+.|++||++++    +....+..|...|.+++|+|+.   ..++++++  .|+.|++||+...
T Consensus       230 --------~~l~s~~~d~~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~p~~---~~ll~~~~gs~d~~i~i~d~~~~  294 (401)
T 4aez_A          230 --------LQLASGGNDNVVQIWDARSS----IPKFTKTNHNAAVKAVAWCPWQ---SNLLATGGGTMDKQIHFWNAATG  294 (401)
T ss_dssp             --------SEEEEEETTSCEEEEETTCS----SEEEEECCCSSCCCEEEECTTS---TTEEEEECCTTTCEEEEEETTTC
T ss_pred             --------CEEEEEeCCCeEEEccCCCC----CccEEecCCcceEEEEEECCCC---CCEEEEecCCCCCEEEEEECCCC
Confidence                    78999999999999999875    3445667899999999999975   45788876  7999999998753


Q ss_pred             CCcccceEeeccccCeEEEEeecCCCEEEEEe--CCCcEEEeEc
Q 036510          246 GDQWEGKVLHDFKTPVYRVSWSLTGNILAVAD--GNNNVTLWEE  287 (288)
Q Consensus       246 ~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~--~d~~v~~w~~  287 (288)
                      ..   ... ..+...|.+++|+|+|++|++++  .|+.|+||++
T Consensus       295 ~~---~~~-~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~  334 (401)
T 4aez_A          295 AR---VNT-VDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSY  334 (401)
T ss_dssp             CE---EEE-EECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEE
T ss_pred             CE---EEE-EeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEec
Confidence            21   122 23567899999999999999954  8999999995

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-33  Score=250.58  Aligned_cols=252  Identities=13%  Similarity=0.142  Sum_probs=188.3

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCC-CceeeEEEec------------cccCeEEEEecCCCCCCEEEEe
Q 036510            9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNN-TSQHLAKLSG------------HKGAVWEVAWAHPKFGSILASC   75 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~-~~~~~~~~~~------------h~~~v~~~~~~~~~~~~~l~s~   75 (288)
                      +|...|.+++|+|++++|++|+.|++|++||+... .++.+..+.+            +...+.++.+...+++.+|+++
T Consensus       109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  188 (437)
T 3gre_A          109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL  188 (437)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence            79999999999999999999999999999998411 1122332222            3455566663322358899999


Q ss_pred             eCCCcEEEeecCCCCceEEeEEeec--CCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEee-ccCCCCe
Q 036510           76 SFDGTVIIWKEGNSNEWIKDHVFED--HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRID-QAHPVGV  152 (288)
Q Consensus        76 s~d~~v~iwd~~~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~v  152 (288)
                      +.|++|++||+++..   ....+..  |...|++++|+|+  +.++++|+.|+.|++||++.+..   .... ..|...|
T Consensus       189 ~~d~~i~iwd~~~~~---~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v  260 (437)
T 3gre_A          189 TNLSRVIIFDIRTLE---RLQIIENSPRHGAVSSICIDEE--CCVLILGTTRGIIDIWDIRFNVL---IRSWSFGDHAPI  260 (437)
T ss_dssp             ETTSEEEEEETTTCC---EEEEEECCGGGCCEEEEEECTT--SCEEEEEETTSCEEEEETTTTEE---EEEEBCTTCEEE
T ss_pred             eCCCeEEEEeCCCCe---eeEEEccCCCCCceEEEEECCC--CCEEEEEcCCCeEEEEEcCCccE---EEEEecCCCCce
Confidence            999999999998765   3455665  8899999999998  67899999999999999987432   2222 2677789


Q ss_pred             eEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeee--------------------cccc--CCc
Q 036510          153 TSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFP--------------------ALQM--HTD  210 (288)
Q Consensus       153 ~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------------------~~~~--h~~  210 (288)
                      .++.|+|..          ..++.+|++|+.|++|++||++++........                    .+.+  |..
T Consensus       261 ~~~~~~~~~----------s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  330 (437)
T 3gre_A          261 THVEVCQFY----------GKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLN  330 (437)
T ss_dssp             EEEEECTTT----------CTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGG
T ss_pred             EEEEecccc----------CCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCC
Confidence            999888752          12236899999999999999987632111100                    1122  777


Q ss_pred             ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEee-----------------------------------
Q 036510          211 WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLH-----------------------------------  255 (288)
Q Consensus       211 ~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~-----------------------------------  255 (288)
                      .|.+++|++     +.+|++|+.|+.|++||+......   ..+.                                   
T Consensus       331 ~v~~l~~~~-----~~~l~s~~~d~~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (437)
T 3gre_A          331 ALSTISVSN-----DKILLTDEATSSIVMFSLNELSSS---KAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDD  402 (437)
T ss_dssp             GGCCEEEET-----TEEEEEEGGGTEEEEEETTCGGGC---EEEECC--CCCEEEEEEEETTEEEEEEECC---------
T ss_pred             ceEEEEECC-----ceEEEecCCCCeEEEEECCCcccc---eEEecccccCceEEEEEeecceEEEEEecccccccccCc
Confidence            788899984     368999999999999998754211   1111                                   


Q ss_pred             --ccccCeEEEEeecC--CCEEEEEeCCCcEEEeE
Q 036510          256 --DFKTPVYRVSWSLT--GNILAVADGNNNVTLWE  286 (288)
Q Consensus       256 --~~~~~i~~~~~spd--g~~l~s~~~d~~v~~w~  286 (288)
                        .|...|++++|+++  +.+|++|+.||.|+||+
T Consensus       403 ~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          403 SLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             ----CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             ccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence              16788999999998  78999999999999995

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.4e-32  Score=242.83  Aligned_cols=244  Identities=18%  Similarity=0.293  Sum_probs=191.0

Q ss_pred             EEEEcCCCCE-EEEeeCCCcEEEEEeCCCCc--eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCce
Q 036510           16 DVAMDYYGKR-LATASSDYSIKIIGVGNNTS--QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEW   92 (288)
Q Consensus        16 ~~~~s~~g~~-l~s~~~d~~i~lwd~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~   92 (288)
                      .++++|+... +++++.|+.|++|++.....  ..+..+.+|...|++++|++. ++.+|++++.|++|++|++..+...
T Consensus        39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~-~~~~l~s~s~dg~v~vw~~~~~~~~  117 (402)
T 2aq5_A           39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPH-NDNVIASGSEDCTVMVWEIPDGGLV  117 (402)
T ss_dssp             SEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTT-CTTEEEEEETTSEEEEEECCTTCCS
T ss_pred             cEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCC-CCCEEEEEeCCCeEEEEEccCCCCc
Confidence            4678887644 45688999999999853211  235567899999999999862 4789999999999999999765210


Q ss_pred             ----EEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEee--ccCCCCeeEEEeCCCCCCCce
Q 036510           93 ----IKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRID--QAHPVGVTSVSWAPSTAPGAL  166 (288)
Q Consensus        93 ----~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~v~~i~~~p~~~~~~~  166 (288)
                          .....+.+|...|.+++|+|++ ..++++|+.|+.|++||++.+.   .....  ..|...|.++.|+|++     
T Consensus       118 ~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~-----  188 (402)
T 2aq5_A          118 LPLREPVITLEGHTKRVGIVAWHPTA-QNVLLSAGCDNVILVWDVGTGA---AVLTLGPDVHPDTIYSVDWSRDG-----  188 (402)
T ss_dssp             SCBCSCSEEEECCSSCEEEEEECSSB-TTEEEEEETTSCEEEEETTTTE---EEEEECTTTCCSCEEEEEECTTS-----
T ss_pred             cccCCceEEecCCCCeEEEEEECcCC-CCEEEEEcCCCEEEEEECCCCC---ccEEEecCCCCCceEEEEECCCC-----
Confidence                1345677899999999999984 3579999999999999998653   22334  6799999999999987     


Q ss_pred             ecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecc-ccCCcc-eEEEEecCCCCCCCcEEEEE---eCCCcEEEEE
Q 036510          167 VGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPAL-QMHTDW-VRDVAWAPNLGLPKSTIASA---SEDGKVIIWT  241 (288)
Q Consensus       167 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~h~~~-V~~v~~sp~~~~~~~~l~s~---s~D~~i~iw~  241 (288)
                               ++|++++.|+.|++||++++    +.+..+ .+|... +.++.|+|+    +.+|++|   +.|+.|++||
T Consensus       189 ---------~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~g~~~~~d~~i~iwd  251 (402)
T 2aq5_A          189 ---------ALICTSCRDKRVRVIEPRKG----TVVAEKDRPHEGTRPVHAVFVSE----GKILTTGFSRMSERQVALWD  251 (402)
T ss_dssp             ---------SCEEEEETTSEEEEEETTTT----EEEEEEECSSCSSSCCEEEECST----TEEEEEEECTTCCEEEEEEE
T ss_pred             ---------CEEEEEecCCcEEEEeCCCC----ceeeeeccCCCCCcceEEEEcCC----CcEEEEeccCCCCceEEEEc
Confidence                     78999999999999999876    344455 577765 899999997    4688888   7999999999


Q ss_pred             eecCCCcccceEeeccccCeEEEEeecCCCEEEE-EeCCCcEEEeEc
Q 036510          242 VAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAV-ADGNNNVTLWEE  287 (288)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s-~~~d~~v~~w~~  287 (288)
                      ++....+. ......+...+.+++|+|+|++|++ |+.|++|++||+
T Consensus       252 ~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~  297 (402)
T 2aq5_A          252 TKHLEEPL-SLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEI  297 (402)
T ss_dssp             TTBCSSCS-EEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEE
T ss_pred             CccccCCc-eEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEe
Confidence            87643211 1222245678999999999999875 557999999995

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.4e-32  Score=250.85  Aligned_cols=248  Identities=16%  Similarity=0.229  Sum_probs=202.6

Q ss_pred             cccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCC--CceeeEEEeccccC-eEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510            8 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNN--TSQHLAKLSGHKGA-VWEVAWAHPKFGSILASCSFDGTVIIW   84 (288)
Q Consensus         8 ~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~--~~~~~~~~~~h~~~-v~~~~~~~~~~~~~l~s~s~d~~v~iw   84 (288)
                      ..|.+.|.+++|+|+|++|++++ ++.|++|++..+  ..+....+.+|... |++++|++..++++|++++.|++|++|
T Consensus        15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw   93 (615)
T 1pgu_A           15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW   93 (615)
T ss_dssp             CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred             CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEE
Confidence            37899999999999999999998 889999998632  01567889999999 999999861138999999999999999


Q ss_pred             ecCCCC-----ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC----CcEEEEeecCCCCeeeEEeeccCCCCeeEE
Q 036510           85 KEGNSN-----EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD----GNISVFTARADGGWDTSRIDQAHPVGVTSV  155 (288)
Q Consensus        85 d~~~~~-----~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i  155 (288)
                      |+.++.     .......+..|..+|.+++|+|+  +.++++++.+    +.|++||..  .   ......+|...|.++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~~~~~~~~v~~~d~~--~---~~~~~~~~~~~v~~~  166 (615)
T 1pgu_A           94 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE--GRRLCVVGEGRDNFGVFISWDSG--N---SLGEVSGHSQRINAC  166 (615)
T ss_dssp             EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTT--SSEEEEEECCSSCSEEEEETTTC--C---EEEECCSCSSCEEEE
T ss_pred             eCCCCcccccccccccchhhcccccEEEEEEeCC--CCEEEEeccCCCCccEEEEEECC--C---cceeeecCCccEEEE
Confidence            986431     12345567789999999999998  5678888877    688888732  1   234556899999999


Q ss_pred             EeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCc---ceEEEEecCCCCCCCcEEEEEe
Q 036510          156 SWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTD---WVRDVAWAPNLGLPKSTIASAS  232 (288)
Q Consensus       156 ~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~---~V~~v~~sp~~~~~~~~l~s~s  232 (288)
                      .|+|++.             .++++++.|+.|++||+.++    +++..+.+|..   .|.+++|+|+.   +.+|++++
T Consensus       167 ~~~~~~~-------------~~l~~~~~d~~v~vwd~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~  226 (615)
T 1pgu_A          167 HLKQSRP-------------MRSMTVGDDGSVVFYQGPPF----KFSASDRTHHKQGSFVRDVEFSPDS---GEFVITVG  226 (615)
T ss_dssp             EECSSSS-------------CEEEEEETTTEEEEEETTTB----EEEEEECSSSCTTCCEEEEEECSTT---CCEEEEEE
T ss_pred             EECCCCC-------------cEEEEEeCCCcEEEEeCCCc----ceeeeecccCCCCceEEEEEECCCC---CCEEEEEe
Confidence            9999872             37999999999999998765    45567788998   99999999972   36899999


Q ss_pred             CCCcEEEEEeecCCCcccceEe-e---ccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          233 EDGKVIIWTVAREGDQWEGKVL-H---DFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       233 ~D~~i~iw~~~~~~~~~~~~~~-~---~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      .|+.|++||+...+   ....+ .   .|..+|.+++|+ ++++|++++.|++|++||.
T Consensus       227 ~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~  281 (615)
T 1pgu_A          227 SDRKISCFDGKSGE---FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDV  281 (615)
T ss_dssp             TTCCEEEEETTTCC---EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEET
T ss_pred             CCCeEEEEECCCCC---EeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEEC
Confidence            99999999987542   12233 3   677899999999 9999999999999999995

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=9.5e-33  Score=246.18  Aligned_cols=248  Identities=16%  Similarity=0.227  Sum_probs=183.6

Q ss_pred             cceEEEEEcCCC--CEEEEeeCCCcEEEEEeCCCCc-------------------------------------eeeEE-E
Q 036510           12 DTVHDVAMDYYG--KRLATASSDYSIKIIGVGNNTS-------------------------------------QHLAK-L   51 (288)
Q Consensus        12 ~~v~~~~~s~~g--~~l~s~~~d~~i~lwd~~~~~~-------------------------------------~~~~~-~   51 (288)
                      +.|.+++|+|++  .+|++++.|++|++|++.....                                     ..... +
T Consensus        94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (447)
T 3dw8_B           94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA  173 (447)
T ss_dssp             CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred             CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence            889999999998  7999999999999999853111                                     00112 3


Q ss_pred             eccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeE-----EeecCCCceeEEEeccCCCCeEEEEEeCCC
Q 036510           52 SGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDH-----VFEDHKSSVNSIDWAPHELGLCLACGSSDG  126 (288)
Q Consensus        52 ~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-----~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~  126 (288)
                      .+|...|++++|+++  +++|++| .|++|++||+..........     .+..|...|++++|+|++ ..++++|+.|+
T Consensus       174 ~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~s~~~dg  249 (447)
T 3dw8_B          174 NAHTYHINSISINSD--YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNS-CNTFVYSSSKG  249 (447)
T ss_dssp             SCCSSCCCEEEECTT--SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSC-TTEEEEEETTS
T ss_pred             cCCCcceEEEEEcCC--CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCC-CcEEEEEeCCC
Confidence            689999999999864  8899998 79999999997433211110     245799999999999983 26899999999


Q ss_pred             cEEEEeecCCCCee-eEEeeccCCC------------CeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEe
Q 036510          127 NISVFTARADGGWD-TSRIDQAHPV------------GVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLY  193 (288)
Q Consensus       127 ~i~i~d~~~~~~~~-~~~~~~~~~~------------~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  193 (288)
                      .|++||++.+.... .......|..            .|.++.|+|++              ++|++++. +.|++||++
T Consensus       250 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--------------~~l~~~~~-~~v~iwd~~  314 (447)
T 3dw8_B          250 TIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG--------------RYMMTRDY-LSVKVWDLN  314 (447)
T ss_dssp             CEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTS--------------SEEEEEES-SEEEEEETT
T ss_pred             eEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCC--------------CEEEEeeC-CeEEEEeCC
Confidence            99999998764311 1233445554            89999999987              78899888 999999997


Q ss_pred             C-CceeeeeeeccccCCcc---------------eEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccc------
Q 036510          194 N-GIWKMDCFPALQMHTDW---------------VRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEG------  251 (288)
Q Consensus       194 ~-~~~~~~~~~~~~~h~~~---------------V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~------  251 (288)
                      . +    +++..+.+|...               +..++|+|++    .+|++|+.|+.|++||+.........      
T Consensus       315 ~~~----~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~----~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  386 (447)
T 3dw8_B          315 MEN----RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSD----SVVMTGSYNNFFRMFDRNTKRDITLEASRENN  386 (447)
T ss_dssp             CCS----SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTS----SEEEEECSTTEEEEEETTTCCEEEEECCSTTC
T ss_pred             CCc----cccceeeccccccccccccccccccccceEEEECCCC----CEEEEeccCCEEEEEEcCCCcceeeeeccccc
Confidence            5 3    345556666532               2248999984    68999999999999998754210000      


Q ss_pred             ---------------------eE--eeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          252 ---------------------KV--LHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       252 ---------------------~~--~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                                           ..  ..++...|..++|||+|++||+++.|+ +.+|..
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          387 KPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD  444 (447)
T ss_dssp             CTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred             ccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence                                 00  013446789999999999999998765 777763

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-32  Score=238.32  Aligned_cols=235  Identities=10%  Similarity=0.035  Sum_probs=171.9

Q ss_pred             EcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC------ce
Q 036510           19 MDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN------EW   92 (288)
Q Consensus        19 ~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~------~~   92 (288)
                      +.+++++|++|+.|++|++||+..+  +.+..+.  ...|..+.|.+    . +++++.|++|++|+.....      +.
T Consensus        44 ~~~d~~~l~sg~~Dg~v~iwd~~~~--~~~~~~~--~~~v~~~~~~~----~-~~s~s~D~~i~~w~~~~~~~~~~~~~~  114 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHFTQLKDS--KTITTIT--TPNPRTGGEHP----A-IISRGPCNRLLLLYPGNQITILDSKTN  114 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEEEEESSS--SCEEEEE--EECCCTTCCCC----S-EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred             hcCCCCEEEEECCCCcEEEEECCCC--cEEEEEe--cCCceeeeeCC----c-eEEecCCCeEEEEEccCceEEeecCCc
Confidence            3457889999999999999999644  4455554  56677777753    2 9999999999999765210      11


Q ss_pred             EEeEEe-ecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccc
Q 036510           93 IKDHVF-EDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGF  171 (288)
Q Consensus        93 ~~~~~~-~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~  171 (288)
                      .....+ ..|..+|.+++|+|...+.++++|+.|++|++||++.+...  ......|...+.++.|+|++          
T Consensus       115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~--~~~~~~~~~~i~~~~~~pdg----------  182 (343)
T 3lrv_A          115 KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQY--IVHSAKSDVEYSSGVLHKDS----------  182 (343)
T ss_dssp             CEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEE--EEECCCSSCCCCEEEECTTS----------
T ss_pred             ceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEE--EEEecCCCCceEEEEECCCC----------
Confidence            111222 25778999999999222678999999999999999875431  12223456679999999987          


Q ss_pred             cCCCceeEEeecCCcEEEEEEeCCceeeeee-ecccc-CCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcc
Q 036510          172 LDPVQKLCSGGCDNTVKVWKLYNGIWKMDCF-PALQM-HTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQW  249 (288)
Q Consensus       172 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~-h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~  249 (288)
                          .+|++|+.|+.|++||++++.    .. ..+.+ |..+|.+++|+|++    .+|+++++| +|++||++......
T Consensus       183 ----~~lasg~~dg~i~iwd~~~~~----~~~~~~~~~h~~~v~~l~fs~~g----~~l~s~~~~-~v~iwd~~~~~~~~  249 (343)
T 3lrv_A          183 ----LLLALYSPDGILDVYNLSSPD----QASSRFPVDEEAKIKEVKFADNG----YWMVVECDQ-TVVCFDLRKDVGTL  249 (343)
T ss_dssp             ----CEEEEECTTSCEEEEESSCTT----SCCEECCCCTTSCEEEEEECTTS----SEEEEEESS-BEEEEETTSSTTCB
T ss_pred             ----CEEEEEcCCCEEEEEECCCCC----CCccEEeccCCCCEEEEEEeCCC----CEEEEEeCC-eEEEEEcCCCCcce
Confidence                789999999999999998863    22 45566 99999999999984    789999955 99999998653221


Q ss_pred             cceEeeccccCe--EEEEeecCCCEEEEEeC-CCcEEEeEc
Q 036510          250 EGKVLHDFKTPV--YRVSWSLTGNILAVADG-NNNVTLWEE  287 (288)
Q Consensus       250 ~~~~~~~~~~~i--~~~~~spdg~~l~s~~~-d~~v~~w~~  287 (288)
                      ....+..+..++  .+++|+|+|++|++++. |+.|+||+.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~  290 (343)
T 3lrv_A          250 AYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKF  290 (343)
T ss_dssp             SSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             eecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEE
Confidence            111111122233  46999999999999998 999999985

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-32  Score=262.37  Aligned_cols=161  Identities=12%  Similarity=0.106  Sum_probs=123.0

Q ss_pred             eEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCe--eeEEe-e-----ccCCCCeeEEEeCCCCCCCceecccccCCCce
Q 036510          106 NSIDWAPHELGLCLACGSSDGNISVFTARADGGW--DTSRI-D-----QAHPVGVTSVSWAPSTAPGALVGSGFLDPVQK  177 (288)
Q Consensus       106 ~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~--~~~~~-~-----~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~  177 (288)
                      .+++|+|+  +.++++|+.|++|++||+..+...  ..+.. .     .+|...|.+++|+|++              ++
T Consensus       439 ~sv~~spd--g~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg--------------~~  502 (902)
T 2oaj_A          439 RQKLPAEY--GTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAET--------------LE  502 (902)
T ss_dssp             CCCCCCSE--EEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTT--------------TE
T ss_pred             Cccccccc--CcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCC--------------Ce
Confidence            33444565  678999999999999999765311  01111 1     2788899999999998              78


Q ss_pred             eEEeecCCcEEEEEEeCCce-----------------------------------------eeeeeeccccCCcceEEEE
Q 036510          178 LCSGGCDNTVKVWKLYNGIW-----------------------------------------KMDCFPALQMHTDWVRDVA  216 (288)
Q Consensus       178 l~s~~~d~~i~iwd~~~~~~-----------------------------------------~~~~~~~~~~h~~~V~~v~  216 (288)
                      |++|+.|++|+|||+.++..                                         .++++..+.+|.+.|++|+
T Consensus       503 LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~sva  582 (902)
T 2oaj_A          503 LAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAIN  582 (902)
T ss_dssp             EEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEE
T ss_pred             EEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEE
Confidence            99999999999999976521                                         0134567788999999999


Q ss_pred             ecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcc--cceEee-ccccCeEEEEee-----cCC---CEEEEEeCCCcEEEe
Q 036510          217 WAPNLGLPKSTIASASEDGKVIIWTVAREGDQW--EGKVLH-DFKTPVYRVSWS-----LTG---NILAVADGNNNVTLW  285 (288)
Q Consensus       217 ~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~--~~~~~~-~~~~~i~~~~~s-----pdg---~~l~s~~~d~~v~~w  285 (288)
                      |||+    + +||+|+.|++|++||++......  ....+. +|.+.|++++|+     |||   ++|++|+.|++|++|
T Consensus       583 fSpd----G-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~w  657 (902)
T 2oaj_A          583 NSNI----G-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITY  657 (902)
T ss_dssp             ECBT----S-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEE
T ss_pred             ecCC----c-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEE
Confidence            9997    5 89999999999999976421100  001112 567789999999     886   899999999999999


Q ss_pred             Ec
Q 036510          286 EE  287 (288)
Q Consensus       286 ~~  287 (288)
                      |+
T Consensus       658 d~  659 (902)
T 2oaj_A          658 KI  659 (902)
T ss_dssp             EE
T ss_pred             EE
Confidence            95

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3.8e-31  Score=227.23  Aligned_cols=217  Identities=24%  Similarity=0.362  Sum_probs=175.9

Q ss_pred             CCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCc--eEEeEEeecCCCceeEEEeccCCCCeEEE
Q 036510           43 NTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNE--WIKDHVFEDHKSSVNSIDWAPHELGLCLA  120 (288)
Q Consensus        43 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~~p~~~~~~l~  120 (288)
                      +......+|.||.+.|++|+|+|+ .+++|+|||.|++|+|||+.....  ......+.+|...|.+++|+|+  +.+++
T Consensus        26 ~~~~l~~tL~GH~~~V~~v~~sp~-~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~d--g~~l~  102 (340)
T 4aow_A           26 EQMTLRGTLKGHNGWVTQIATTPQ-FPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD--GQFAL  102 (340)
T ss_dssp             CEEEEEEEECCCSSCEEEEEECTT-CTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTT--SSEEE
T ss_pred             CceEEEEEECCccCCEEEEEEeCC-CCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCC--CCEEE
Confidence            344566789999999999999864 468999999999999999865432  2345677899999999999998  67899


Q ss_pred             EEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeee
Q 036510          121 CGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMD  200 (288)
Q Consensus       121 sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  200 (288)
                      +|+.|+.|++|+.....   .......+...+..+.++|.+              ..|++++.|+.+++||+....   .
T Consensus       103 s~~~d~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--------------~~l~s~s~d~~~~~~d~~~~~---~  162 (340)
T 4aow_A          103 SGSWDGTLRLWDLTTGT---TTRRFVGHTKDVLSVAFSSDN--------------RQIVSGSRDKTIKLWNTLGVC---K  162 (340)
T ss_dssp             EEETTSEEEEEETTTTE---EEEEEECCSSCEEEEEECTTS--------------SCEEEEETTSCEEEECTTSCE---E
T ss_pred             EEcccccceEEeecccc---eeeeecCCCCceeEEEEeecC--------------ccceeecCCCeEEEEEeCCCc---e
Confidence            99999999999987642   223334566678888888876              679999999999999986542   2


Q ss_pred             eeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCC
Q 036510          201 CFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNN  280 (288)
Q Consensus       201 ~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~  280 (288)
                      ......+|...|..++|+++..  ..++++++.|++|++||++...   ....+.+|.++|++++|+|+|++|++|+.|+
T Consensus       163 ~~~~~~~~~~~v~~~~~~~~~~--~~~~~s~~~d~~i~i~d~~~~~---~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg  237 (340)
T 4aow_A          163 YTVQDESHSEWVSCVRFSPNSS--NPIIVSCGWDKLVKVWNLANCK---LKTNHIGHTGYLNTVTVSPDGSLCASGGKDG  237 (340)
T ss_dssp             EEECSSSCSSCEEEEEECSCSS--SCEEEEEETTSCEEEEETTTTE---EEEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred             EEEEeccccCcccceEEccCCC--CcEEEEEcCCCEEEEEECCCCc---eeeEecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence            3345678999999999999752  3578999999999999987532   2344566788999999999999999999999


Q ss_pred             cEEEeEc
Q 036510          281 NVTLWEE  287 (288)
Q Consensus       281 ~v~~w~~  287 (288)
                      +|+|||+
T Consensus       238 ~i~iwd~  244 (340)
T 4aow_A          238 QAMLWDL  244 (340)
T ss_dssp             EEEEEET
T ss_pred             eEEEEEe
Confidence            9999995

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=5.2e-31  Score=235.76  Aligned_cols=236  Identities=25%  Similarity=0.437  Sum_probs=193.5

Q ss_pred             CccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510            4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVII   83 (288)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i   83 (288)
                      .+.+.+|.+.|.. +++++|++|++|+.|++|++||+..  ++.+..+.+|...|++++|+    +.+|++++.|++|++
T Consensus       111 ~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~----~~~l~s~~~dg~i~v  183 (445)
T 2ovr_B          111 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVT--GKCLRTLVGHTGGVWSSQMR----DNIIISGSTDRTLKV  183 (445)
T ss_dssp             CEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTT--CCEEEECCCCSSCEEEEEEE----TTEEEEEETTSCEEE
T ss_pred             eEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCC--CcEEEEEcCCCCCEEEEEec----CCEEEEEeCCCeEEE
Confidence            4467799887533 3555699999999999999999854  46788899999999999996    569999999999999


Q ss_pred             eecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCC
Q 036510           84 WKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAP  163 (288)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~  163 (288)
                      ||+.++.   ....+.+|...|.++.|++    ..+++|+.|+.|++||++.+..   .....+|...+.++.|.  +  
T Consensus       184 wd~~~~~---~~~~~~~h~~~v~~~~~~~----~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~~--~--  249 (445)
T 2ovr_B          184 WNAETGE---CIHTLYGHTSTVRCMHLHE----KRVVSGSRDATLRVWDIETGQC---LHVLMGHVAAVRCVQYD--G--  249 (445)
T ss_dssp             EETTTTE---EEEEECCCSSCEEEEEEET----TEEEEEETTSEEEEEESSSCCE---EEEEECCSSCEEEEEEC--S--
T ss_pred             EECCcCc---EEEEECCCCCcEEEEEecC----CEEEEEeCCCEEEEEECCCCcE---EEEEcCCcccEEEEEEC--C--
Confidence            9997764   4566788999999999975    3589999999999999987542   34456788999999983  2  


Q ss_pred             CceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEee
Q 036510          164 GALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA  243 (288)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~  243 (288)
                                  .++++++.|+.|++||++++    +++..+.+|...|.++.|.      +.+|++|+.|+.|++||++
T Consensus       250 ------------~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~------~~~l~~~~~d~~i~i~d~~  307 (445)
T 2ovr_B          250 ------------RRVVSGAYDFMVKVWDPETE----TCLHTLQGHTNRVYSLQFD------GIHVVSGSLDTSIRVWDVE  307 (445)
T ss_dssp             ------------SCEEEEETTSCEEEEEGGGT----EEEEEECCCSSCEEEEEEC------SSEEEEEETTSCEEEEETT
T ss_pred             ------------CEEEEEcCCCEEEEEECCCC----cEeEEecCCCCceEEEEEC------CCEEEEEeCCCeEEEEECC
Confidence                        67999999999999998876    4566778899999999993      3589999999999999987


Q ss_pred             cCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          244 REGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       244 ~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ...   ....+..+...+.++.+  ++++|++|+.|++|++||.
T Consensus       308 ~~~---~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~  346 (445)
T 2ovr_B          308 TGN---CIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDI  346 (445)
T ss_dssp             TCC---EEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEET
T ss_pred             CCC---EEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEEC
Confidence            542   22344566677877766  6789999999999999995

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-31  Score=239.36  Aligned_cols=243  Identities=13%  Similarity=0.092  Sum_probs=188.0

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCC-ceeeEEEe-------------------------------------
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNT-SQHLAKLS-------------------------------------   52 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~-~~~~~~~~-------------------------------------   52 (288)
                      ..++.+++|+++|++|+++ .++.|++||+..+. .+.+..+.                                     
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            3577899999999966655 57899999985442 11333333                                     


Q ss_pred             -----------------ccccCeEEEEecCCCCCCEE-EEeeCCCcEEEeecC--CCCceEEeEEee--cCCCceeEEEe
Q 036510           53 -----------------GHKGAVWEVAWAHPKFGSIL-ASCSFDGTVIIWKEG--NSNEWIKDHVFE--DHKSSVNSIDW  110 (288)
Q Consensus        53 -----------------~h~~~v~~~~~~~~~~~~~l-~s~s~d~~v~iwd~~--~~~~~~~~~~~~--~h~~~v~~l~~  110 (288)
                                       +|...|++++|+++  +.+| ++++.|++|++|++.  .+..   ...+.  .|...|.+++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--~~~l~~~~~~dg~v~iwd~~~~~~~~---~~~~~~~~~~~~v~~~~~  157 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSD--ESRLIACADSDKSLLVFDVDKTSKNV---LKLRKRFCFSKRPNAISI  157 (450)
T ss_dssp             -----------------CCCCCEEEEEECTT--SSEEEEEEGGGTEEEEEEECSSSSSC---EEEEEEEECSSCEEEEEE
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCC--CCEEEEEECCCCeEEEEECcCCCCce---eeeeecccCCCCceEEEE
Confidence                             34447999999875  7775 899999999999997  5543   22333  57789999999


Q ss_pred             ccCCCCeEEEEEeCCCcEEEEeecCCCCee-eEEeeccCCCCeeEEEeCCC---CCCCceecccccCCCceeEEeecCCc
Q 036510          111 APHELGLCLACGSSDGNISVFTARADGGWD-TSRIDQAHPVGVTSVSWAPS---TAPGALVGSGFLDPVQKLCSGGCDNT  186 (288)
Q Consensus       111 ~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~v~~i~~~p~---~~~~~~~~~~~~~~~~~l~s~~~d~~  186 (288)
                      +|+  +.++++|+.++.+++|++....... ......+|...|.++.|+|+   +              .+|++++.|++
T Consensus       158 sp~--~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~--------------~~l~s~~~d~~  221 (450)
T 2vdu_B          158 AED--DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGH--------------QFIITSDRDEH  221 (450)
T ss_dssp             CTT--SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSC--------------EEEEEEETTSC
T ss_pred             cCC--CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCC--------------cEEEEEcCCCc
Confidence            998  6789999999999999987654322 22244578899999999998   5              78999999999


Q ss_pred             EEEEEEeCCceeeeeeec-cccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEee----------
Q 036510          187 VKVWKLYNGIWKMDCFPA-LQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLH----------  255 (288)
Q Consensus       187 i~iwd~~~~~~~~~~~~~-~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~----------  255 (288)
                      |++||+.++.    ++.. +.+|...|.+++|+ +    +.+|++|+.|++|++||+......   ..+.          
T Consensus       222 i~vwd~~~~~----~~~~~~~~h~~~v~~~~~s-d----~~~l~s~~~d~~v~vwd~~~~~~~---~~~~~~~~~~~~~~  289 (450)
T 2vdu_B          222 IKISHYPQCF----IVDKWLFGHKHFVSSICCG-K----DYLLLSAGGDDKIFAWDWKTGKNL---STFDYNSLIKPYLN  289 (450)
T ss_dssp             EEEEEESCTT----CEEEECCCCSSCEEEEEEC-S----TTEEEEEESSSEEEEEETTTCCEE---EEEECHHHHGGGCC
T ss_pred             EEEEECCCCc----eeeeeecCCCCceEEEEEC-C----CCEEEEEeCCCeEEEEECCCCcEe---eeecchhhhhhhhh
Confidence            9999998763    3333 56899999999999 6    478999999999999998754211   1111          


Q ss_pred             ---------------ccccCeEEEEeecCCCEEEEEe-CCCcEEEeEc
Q 036510          256 ---------------DFKTPVYRVSWSLTGNILAVAD-GNNNVTLWEE  287 (288)
Q Consensus       256 ---------------~~~~~i~~~~~spdg~~l~s~~-~d~~v~~w~~  287 (288)
                                     .....|.+++|+|+|++|++++ .|+.|+||++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          290 DQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             TTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             hcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence                           1234689999999999999999 8999999996

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=2.7e-31  Score=231.38  Aligned_cols=247  Identities=15%  Similarity=0.178  Sum_probs=176.9

Q ss_pred             ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEE-EEeeCCCcEEEee
Q 036510            7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSIL-ASCSFDGTVIIWK   85 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~d~~v~iwd   85 (288)
                      ..+|+..|.+++|+|||++|++|+.| .+++|+...  .+.+....  ...+..+++.+.  ++.+ ++++.|++|++||
T Consensus        15 ~~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~--~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~d~~v~iWd   87 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHP--VAHIMSQE--MRHLSKVRMLHR--TNYVAFVTGVKEVVHIWD   87 (355)
T ss_dssp             ----CCCCCEEEECTTSSEEEEECSS-EEEEEEETT--EEEEEEEE--CSCCCEEEECTT--SSEEEEECSSTTEEEEEE
T ss_pred             cccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCC--cceeeeee--cCCeEEEEEcCC--CCEEEEEECCccEEEEEE
Confidence            36899999999999999999988866 578999853  33333332  234677777654  4455 6788899999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCC---------------CC------------------eEEEE--EeCCCcEEE
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHE---------------LG------------------LCLAC--GSSDGNISV  130 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~---------------~~------------------~~l~s--g~~d~~i~i  130 (288)
                      ..++.   ....+. |...|.+++|+++.               ..                  .+++.  |+.||.|++
T Consensus        88 ~~~~~---~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~i  163 (355)
T 3vu4_A           88 DVKKQ---DVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHI  163 (355)
T ss_dssp             TTTTE---EEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEE
T ss_pred             CCCCc---EEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEE
Confidence            87764   233443 56688888887741               01                  12222  577888888


Q ss_pred             EeecCCCCe------------ee-EEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCc-EEEEEEeCCc
Q 036510          131 FTARADGGW------------DT-SRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNT-VKVWKLYNGI  196 (288)
Q Consensus       131 ~d~~~~~~~------------~~-~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~  196 (288)
                      ||++.+...            .+ .....+|...|.+++|+|++              ++|++|+.|++ |+|||++++ 
T Consensus       164 wd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g--------------~~l~s~s~d~~~v~iwd~~~~-  228 (355)
T 3vu4_A          164 TKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS--------------DMVATCSQDGTIIRVFKTEDG-  228 (355)
T ss_dssp             EECCC------------------CCEEECCCSSCEEEEEECTTS--------------SEEEEEETTCSEEEEEETTTC-
T ss_pred             EECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC--------------CEEEEEeCCCCEEEEEECCCC-
Confidence            887753210            01 34567899999999999987              78999999998 999999876 


Q ss_pred             eeeeeeeccc-c-CCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEee-------------------
Q 036510          197 WKMDCFPALQ-M-HTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLH-------------------  255 (288)
Q Consensus       197 ~~~~~~~~~~-~-h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~-------------------  255 (288)
                         +++..+. + |...|.+++|+|++    ++|++++.|++|++||++...... ...+.                   
T Consensus       229 ---~~~~~~~~g~h~~~v~~~~~s~~~----~~l~s~s~d~~v~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  300 (355)
T 3vu4_A          229 ---VLVREFRRGLDRADVVDMKWSTDG----SKLAVVSDKWTLHVFEIFNDQDNK-RHALKGWINMKYFQSEWSLCNFKL  300 (355)
T ss_dssp             ---CEEEEEECTTCCSCEEEEEECTTS----CEEEEEETTCEEEEEESSCCSCCC-SEETTTTEECCCCCCSSCSEEEEC
T ss_pred             ---cEEEEEEcCCCCCcEEEEEECCCC----CEEEEEECCCEEEEEEccCCCCcc-cccccceeeccccccccceeEEEe
Confidence               3455666 5 99999999999984    789999999999999997542110 01100                   


Q ss_pred             --ccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          256 --DFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       256 --~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                        ....+...++|+|||++|++++.||++++|++
T Consensus       301 ~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~  334 (355)
T 3vu4_A          301 SVDKHVRGCKIAWISESSLVVVWPHTRMIETFKV  334 (355)
T ss_dssp             CCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred             ccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence              01122467999999999999999999999984

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3.4e-31  Score=244.88  Aligned_cols=246  Identities=14%  Similarity=0.204  Sum_probs=201.9

Q ss_pred             Cccccccccc-eEEEEEcC--CCCEEEEeeCCCcEEEEEeCCC------CceeeEEEeccccCeEEEEecCCCCCCEEEE
Q 036510            4 QKIETGHEDT-VHDVAMDY--YGKRLATASSDYSIKIIGVGNN------TSQHLAKLSGHKGAVWEVAWAHPKFGSILAS   74 (288)
Q Consensus         4 ~~~~~~h~~~-v~~~~~s~--~g~~l~s~~~d~~i~lwd~~~~------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s   74 (288)
                      ...+.+|.+. |.+++|+|  +|++|++|+.|++|++||+..+      ..+.+..+.+|...|.+++|+++  +++|++
T Consensus        56 ~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~  133 (615)
T 1pgu_A           56 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE--GRRLCV  133 (615)
T ss_dssp             EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTT--SSEEEE
T ss_pred             ceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCC--CCEEEE
Confidence            3456789999 99999999  9999999999999999999533      34667888999999999999865  899999


Q ss_pred             eeCC----CcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCC
Q 036510           75 CSFD----GTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV  150 (288)
Q Consensus        75 ~s~d----~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~  150 (288)
                      ++.|    +.|++||.  +.   ....+..|...|.+++|+|++ ..++++++.|+.|++||++..   .......+|..
T Consensus       134 ~~~~~~~~~~v~~~d~--~~---~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~v~vwd~~~~---~~~~~~~~~~~  204 (615)
T 1pgu_A          134 VGEGRDNFGVFISWDS--GN---SLGEVSGHSQRINACHLKQSR-PMRSMTVGDDGSVVFYQGPPF---KFSASDRTHHK  204 (615)
T ss_dssp             EECCSSCSEEEEETTT--CC---EEEECCSCSSCEEEEEECSSS-SCEEEEEETTTEEEEEETTTB---EEEEEECSSSC
T ss_pred             eccCCCCccEEEEEEC--CC---cceeeecCCccEEEEEECCCC-CcEEEEEeCCCcEEEEeCCCc---ceeeeecccCC
Confidence            9988    79999983  22   345677899999999999984 337899999999999998754   23345567888


Q ss_pred             ---CeeEEEeCCC-CCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecc-c---cCCcceEEEEecCCCC
Q 036510          151 ---GVTSVSWAPS-TAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPAL-Q---MHTDWVRDVAWAPNLG  222 (288)
Q Consensus       151 ---~v~~i~~~p~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~---~h~~~V~~v~~sp~~~  222 (288)
                         .|.++.|+|+ +              ++|++++.|+.|++||+.++.    .+..+ .   .|...|.++.|+ +  
T Consensus       205 ~~~~v~~~~~~~~~~--------------~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~v~~~~~~-~--  263 (615)
T 1pgu_A          205 QGSFVRDVEFSPDSG--------------EFVITVGSDRKISCFDGKSGE----FLKYIEDDQEPVQGGIFALSWL-D--  263 (615)
T ss_dssp             TTCCEEEEEECSTTC--------------CEEEEEETTCCEEEEETTTCC----EEEECCBTTBCCCSCEEEEEES-S--
T ss_pred             CCceEEEEEECCCCC--------------CEEEEEeCCCeEEEEECCCCC----EeEEecccccccCCceEEEEEc-C--
Confidence               8999999998 6              789999999999999998763    34455 4   899999999999 6  


Q ss_pred             CCCcEEEEEeCCCcEEEEEeecCCCcccceEeecc----ccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          223 LPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDF----KTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       223 ~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~----~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                        +.+|++++.|+.|++||+....   ....+..+    ...+.++.|+ +++++++++.|+.|++||.
T Consensus       264 --~~~l~~~~~d~~i~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~  326 (615)
T 1pgu_A          264 --SQKFATVGADATIRVWDVTTSK---CVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYEL  326 (615)
T ss_dssp             --SSEEEEEETTSEEEEEETTTTE---EEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEET
T ss_pred             --CCEEEEEcCCCcEEEEECCCCc---EEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEEC
Confidence              4789999999999999987532   11222222    3578888886 9999999999999999995

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.1e-30  Score=233.74  Aligned_cols=233  Identities=21%  Similarity=0.367  Sum_probs=194.5

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      .+.+|.+.|.+++|+  +++|++|+.|++|++||+..  ++.+..+.+|...|.++.|+    +..+++++.|++|++||
T Consensus       154 ~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~i~~wd  225 (445)
T 2ovr_B          154 TLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAET--GECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWD  225 (445)
T ss_dssp             ECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEE
T ss_pred             EEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCc--CcEEEEECCCCCcEEEEEec----CCEEEEEeCCCEEEEEE
Confidence            456899999999998  67999999999999999854  47788899999999999995    57899999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      +.++.   ....+.+|...|.+++|+    +.++++|+.|+.|++||++.+.   ......+|...|.++.|+  +    
T Consensus       226 ~~~~~---~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~--~----  289 (445)
T 2ovr_B          226 IETGQ---CLHVLMGHVAAVRCVQYD----GRRVVSGAYDFMVKVWDPETET---CLHTLQGHTNRVYSLQFD--G----  289 (445)
T ss_dssp             SSSCC---EEEEEECCSSCEEEEEEC----SSCEEEEETTSCEEEEEGGGTE---EEEEECCCSSCEEEEEEC--S----
T ss_pred             CCCCc---EEEEEcCCcccEEEEEEC----CCEEEEEcCCCEEEEEECCCCc---EeEEecCCCCceEEEEEC--C----
Confidence            98765   445677899999999983    4568999999999999998653   334456788899999983  2    


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE  245 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~  245 (288)
                                ..+++++.|+.|++||++++    +++..+.+|...+.++.+++      .+|++|+.|+.|++||++..
T Consensus       290 ----------~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~------~~l~~~~~dg~i~vwd~~~~  349 (445)
T 2ovr_B          290 ----------IHVVSGSLDTSIRVWDVETG----NCIHTLTGHQSLTSGMELKD------NILVSGNADSTVKIWDIKTG  349 (445)
T ss_dssp             ----------SEEEEEETTSCEEEEETTTC----CEEEEECCCCSCEEEEEEET------TEEEEEETTSCEEEEETTTC
T ss_pred             ----------CEEEEEeCCCeEEEEECCCC----CEEEEEcCCcccEEEEEEeC------CEEEEEeCCCeEEEEECCCC
Confidence                      67999999999999999876    35567788999999999865      47999999999999998653


Q ss_pred             CCcccceEeec---cccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          246 GDQWEGKVLHD---FKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       246 ~~~~~~~~~~~---~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      .   ....+..   +..+|.+++|+  +++|++|+.||+|++||+
T Consensus       350 ~---~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~  389 (445)
T 2ovr_B          350 Q---CLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDL  389 (445)
T ss_dssp             C---EEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred             c---EEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence            2   1223333   66789999995  689999999999999995

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-30  Score=234.33  Aligned_cols=252  Identities=15%  Similarity=0.076  Sum_probs=190.2

Q ss_pred             cccccceEEEEEcCCCCEE-EEeeCCCcEEEEEeCCCCceeeEEEe--ccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510            8 TGHEDTVHDVAMDYYGKRL-ATASSDYSIKIIGVGNNTSQHLAKLS--GHKGAVWEVAWAHPKFGSILASCSFDGTVIIW   84 (288)
Q Consensus         8 ~~h~~~v~~~~~s~~g~~l-~s~~~d~~i~lwd~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw   84 (288)
                      .+|.+.|.+++|+|+|++| ++|+.|++|++||+....+..+..+.  .|...|.+++|+++  +.+|++++.|+.+++|
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~~g~v~~~  176 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED--DTTVIIADKFGDVYSI  176 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT--SSEEEEEETTSEEEEE
T ss_pred             CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC--CCEEEEEeCCCcEEEE
Confidence            4677889999999999996 89999999999999622335566665  56788999999864  8999999999999999


Q ss_pred             ecCCCCceE-EeEEeecCCCceeEEEeccC-CCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCC
Q 036510           85 KEGNSNEWI-KDHVFEDHKSSVNSIDWAPH-ELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTA  162 (288)
Q Consensus        85 d~~~~~~~~-~~~~~~~h~~~v~~l~~~p~-~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~  162 (288)
                      ++.+..... ....+.+|...|++++|+|+ +.+.++++|+.|+.|++||++.+...  .....+|...|.++.|+ ++ 
T Consensus       177 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~--~~~~~~h~~~v~~~~~s-d~-  252 (450)
T 2vdu_B          177 DINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV--DKWLFGHKHFVSSICCG-KD-  252 (450)
T ss_dssp             ETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE--EEECCCCSSCEEEEEEC-ST-
T ss_pred             ecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee--eeeecCCCCceEEEEEC-CC-
Confidence            987654321 22356679999999999997 23568999999999999999876432  23356799999999999 65 


Q ss_pred             CCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccc-------------------------cCCcceEEEEe
Q 036510          163 PGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQ-------------------------MHTDWVRDVAW  217 (288)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-------------------------~h~~~V~~v~~  217 (288)
                                   .+|++++.|++|++||+.++..    +..+.                         .+...|.++.|
T Consensus       253 -------------~~l~s~~~d~~v~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  315 (450)
T 2vdu_B          253 -------------YLLLSAGGDDKIFAWDWKTGKN----LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK  315 (450)
T ss_dssp             -------------TEEEEEESSSEEEEEETTTCCE----EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred             -------------CEEEEEeCCCeEEEEECCCCcE----eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence                         7899999999999999987632    22221                         23456999999


Q ss_pred             cCCCCCCCcEEEEEe-CCCcEEEEEe--ecCCCcccceEeeccccCeEEEEeecCCCEEEEEeC------CCcEEEeEc
Q 036510          218 APNLGLPKSTIASAS-EDGKVIIWTV--AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADG------NNNVTLWEE  287 (288)
Q Consensus       218 sp~~~~~~~~l~s~s-~D~~i~iw~~--~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~------d~~v~~w~~  287 (288)
                      +|+.    .+|++++ .|+.|++|++  ...........+..+ ..|.+++|+|++.++++++.      ++.|+||.+
T Consensus       316 ~~~~----~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~  389 (450)
T 2vdu_B          316 SKNL----PFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEY  389 (450)
T ss_dssp             CSSS----SEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEE
T ss_pred             eCCC----CEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEE
Confidence            9974    6788888 8999999999  322111122233333 78999999996544444443      556899873

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.6e-31  Score=233.65  Aligned_cols=205  Identities=16%  Similarity=0.148  Sum_probs=161.5

Q ss_pred             ccccceEEEEEcCCCCEEE--EeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510            9 GHEDTVHDVAMDYYGKRLA--TASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE   86 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l~--s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~   86 (288)
                      .++..+..++|||||++|+  +++.|++|+|||+..  .+.+..+. |...|++++|+|+  |++|++++.|+ +++|+.
T Consensus       131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~--~~~~~~~~-~~~~V~~v~fspd--g~~l~s~s~~~-~~~~~~  204 (365)
T 4h5i_A          131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSD--LTEKFEIE-TRGEVKDLHFSTD--GKVVAYITGSS-LEVIST  204 (365)
T ss_dssp             CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTT--TEEEEEEE-CSSCCCEEEECTT--SSEEEEECSSC-EEEEET
T ss_pred             CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCC--CcEEEEeC-CCCceEEEEEccC--CceEEecccee-EEEEEe
Confidence            4566788999999999876  455799999999854  46666665 7888999999875  89999998665 555555


Q ss_pred             CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCC----cEEEEeecCCCCe-eeEEeeccCCCCeeEEEeCCCC
Q 036510           87 GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDG----NISVFTARADGGW-DTSRIDQAHPVGVTSVSWAPST  161 (288)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~----~i~i~d~~~~~~~-~~~~~~~~~~~~v~~i~~~p~~  161 (288)
                      .++.. ........|...|.+++|+|+  +.++++++.|+    .+++|++...... .......+|...|.+++|+|++
T Consensus       205 ~~~~~-~~~~~~~~~~~~v~~v~fspd--g~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg  281 (365)
T 4h5i_A          205 VTGSC-IARKTDFDKNWSLSKINFIAD--DTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKG  281 (365)
T ss_dssp             TTCCE-EEEECCCCTTEEEEEEEEEET--TEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTS
T ss_pred             ccCcc-eeeeecCCCCCCEEEEEEcCC--CCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCC
Confidence            55442 222344568889999999998  67788888777    6788888754321 1223456788999999999997


Q ss_pred             CCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeec-cccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEE
Q 036510          162 APGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPA-LQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIW  240 (288)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw  240 (288)
                                    ++|++|+.|++|+|||+.++    +++.. +.+|..+|++|+|+|++    ++|||||.|++||||
T Consensus       282 --------------~~lasgs~D~~V~iwd~~~~----~~~~~~~~gH~~~V~~v~fSpdg----~~laS~S~D~tvrvw  339 (365)
T 4h5i_A          282 --------------ELAVLASNDNSIALVKLKDL----SMSKIFKQAHSFAITEVTISPDS----TYVASVSAANTIHII  339 (365)
T ss_dssp             --------------CEEEEEETTSCEEEEETTTT----EEEEEETTSSSSCEEEEEECTTS----CEEEEEETTSEEEEE
T ss_pred             --------------CceEEEcCCCEEEEEECCCC----cEEEEecCcccCCEEEEEECCCC----CEEEEEeCCCeEEEE
Confidence                          78999999999999999876    34444 57999999999999984    789999999999999


Q ss_pred             Eeec
Q 036510          241 TVAR  244 (288)
Q Consensus       241 ~~~~  244 (288)
                      ++..
T Consensus       340 ~ip~  343 (365)
T 4h5i_A          340 KLPL  343 (365)
T ss_dssp             ECCT
T ss_pred             EcCC
Confidence            9854

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.3e-31  Score=253.15  Aligned_cols=248  Identities=21%  Similarity=0.282  Sum_probs=203.2

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      .+.+|...|.+++|+|+|++|++|+.|++|++|++..  ++.+..+.+|...|++++|+++  +.+|++++.|++|++|+
T Consensus        50 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~--~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~vw~  125 (814)
T 3mkq_A           50 SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT--GEKVVDFEAHPDYIRSIAVHPT--KPYVLSGSDDLTVKLWN  125 (814)
T ss_dssp             EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECSS--SSEEEEEETTSEEEEEE
T ss_pred             EEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC--CcEEEEEecCCCCEEEEEEeCC--CCEEEEEcCCCEEEEEE
Confidence            3458999999999999999999999999999999854  4678889999999999999865  88999999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCC--CCCC
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAP--STAP  163 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p--~~~~  163 (288)
                      +.++..  ....+..|...|.+++|+|.+ +..+++++.|+.|++||++.+...  ......+...+.++.|+|  ++  
T Consensus       126 ~~~~~~--~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~v~vwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~--  198 (814)
T 3mkq_A          126 WENNWA--LEQTFEGHEHFVMCVAFNPKD-PSTFASGCLDRTVKVWSLGQSTPN--FTLTTGQERGVNYVDYYPLPDK--  198 (814)
T ss_dssp             GGGTSE--EEEEEECCSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCSSCS--EEEECCCTTCCCEEEECCSTTC--
T ss_pred             CCCCce--EEEEEcCCCCcEEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcce--eEEecCCCCCEEEEEEEECCCC--
Confidence            976532  445677899999999999932 678999999999999999765432  223334557899999998  54  


Q ss_pred             CceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEee
Q 036510          164 GALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA  243 (288)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~  243 (288)
                                  .++++++.|+.|++||+.++    +++..+.+|...|.++.|+|++    .+|++++.|+.|++||+.
T Consensus       199 ------------~~l~~~~~dg~i~~~d~~~~----~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~v~vwd~~  258 (814)
T 3mkq_A          199 ------------PYMITASDDLTIKIWDYQTK----SCVATLEGHMSNVSFAVFHPTL----PIIISGSEDGTLKIWNSS  258 (814)
T ss_dssp             ------------CEEEEECTTSEEEEEETTTT----EEEEEEECCSSCEEEEEECSSS----SEEEEEETTSCEEEEETT
T ss_pred             ------------CEEEEEeCCCEEEEEECCCC----cEEEEEcCCCCCEEEEEEcCCC----CEEEEEeCCCeEEEEECC
Confidence                        68999999999999998776    3556678899999999999984    689999999999999987


Q ss_pred             cCCCcccceEeeccccCeEEEEeecCCCE-EEEEeCCCcEEEeEc
Q 036510          244 REGDQWEGKVLHDFKTPVYRVSWSLTGNI-LAVADGNNNVTLWEE  287 (288)
Q Consensus       244 ~~~~~~~~~~~~~~~~~i~~~~~spdg~~-l~s~~~d~~v~~w~~  287 (288)
                      ...   ....+..+...+.+++|+|+|+. +++++.|+.+.+|+.
T Consensus       259 ~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (814)
T 3mkq_A          259 TYK---VEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL  300 (814)
T ss_dssp             TCS---EEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEEC
T ss_pred             CCc---EEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEc
Confidence            532   22344556678999999999974 244556777888874

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-31  Score=257.82  Aligned_cols=243  Identities=16%  Similarity=0.188  Sum_probs=187.3

Q ss_pred             cccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecC
Q 036510            8 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEG   87 (288)
Q Consensus         8 ~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~   87 (288)
                      .||.+.|++++|+|+|++||+|+.|++|+||+...  .+.+.. ..|...|++++|++   +++|++++.|++|++||+.
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~--~~~~~~-~~~~~~V~~l~fsp---g~~L~S~s~D~~v~lWd~~   87 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQ--VEVVIK-LEDRSAIKEMRFVK---GIYLVVINAKDTVYVLSLY   87 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTT--CEEEEE-CSSCCCEEEEEEET---TTEEEEEETTCEEEEEETT
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCC--cEEEEE-cCCCCCEEEEEEcC---CCEEEEEECcCeEEEEECC
Confidence            48999999999999999999999999999999753  233333 35888999999985   5699999999999999998


Q ss_pred             CCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeE---------EeeccCCCCeeEEEeC
Q 036510           88 NSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTS---------RIDQAHPVGVTSVSWA  158 (288)
Q Consensus        88 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~---------~~~~~~~~~v~~i~~~  158 (288)
                      ++.   ....+. |...|++++|+|+  +.++++|+.||+|++||++.... ...         ....+|...|.+++|+
T Consensus        88 ~~~---~~~~~~-~~~~V~~v~~sp~--g~~l~sgs~dg~V~lwd~~~~~~-~~~~i~~~~~~~~~~~~h~~~V~sl~~s  160 (902)
T 2oaj_A           88 SQK---VLTTVF-VPGKITSIDTDAS--LDWMLIGLQNGSMIVYDIDRDQL-SSFKLDNLQKSSFFPAARLSPIVSIQWN  160 (902)
T ss_dssp             TCS---EEEEEE-CSSCEEEEECCTT--CSEEEEEETTSCEEEEETTTTEE-EEEEECCHHHHHTCSSSCCCCCCEEEEE
T ss_pred             CCc---EEEEEc-CCCCEEEEEECCC--CCEEEEEcCCCcEEEEECCCCcc-ccceeccccccccccccCCCCeEEEEEc
Confidence            765   334454 6689999999998  67899999999999999976532 111         1235788999999999


Q ss_pred             CCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccc------------------cCCcceEEEEecCC
Q 036510          159 PSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQ------------------MHTDWVRDVAWAPN  220 (288)
Q Consensus       159 p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~------------------~h~~~V~~v~~sp~  220 (288)
                      |++.             ..+++|+.|+.| +||++++.    ++..+.                  .|...|.+++|+|+
T Consensus       161 p~~~-------------~~l~~g~~dg~v-lWd~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd  222 (902)
T 2oaj_A          161 PRDI-------------GTVLISYEYVTL-TYSLVENE----IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN  222 (902)
T ss_dssp             TTEE-------------EEEEEECSSCEE-EEETTTTE----EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT
T ss_pred             cCCC-------------CEEEEEeCCCcE-EEECCCCc----eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCC
Confidence            9742             578999999999 99998763    222333                  34678999999998


Q ss_pred             CCCCCcEEEEEeCCCcEEEEEeecCCCcccceEe-----e-----------ccccCeEEEEee----cCC-CEEEEEeCC
Q 036510          221 LGLPKSTIASASEDGKVIIWTVAREGDQWEGKVL-----H-----------DFKTPVYRVSWS----LTG-NILAVADGN  279 (288)
Q Consensus       221 ~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~-----~-----------~~~~~i~~~~~s----pdg-~~l~s~~~d  279 (288)
                      +    .+||+|+.|++|++||++..+ ......+     +           .+..+|++++|+    ||+ .+|++|+.|
T Consensus       223 g----~~lasgs~Dg~i~lWd~~~g~-~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~  297 (902)
T 2oaj_A          223 S----LHIITIHEDNSLVFWDANSGH-MIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI  297 (902)
T ss_dssp             S----SEEEEEETTCCEEEEETTTCC-EEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred             C----CEEEEEECCCeEEEEECCCCc-EEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence            4    789999999999999986532 1110011     1           123479999996    554 567777665


Q ss_pred             C-----cEEEeE
Q 036510          280 N-----NVTLWE  286 (288)
Q Consensus       280 ~-----~v~~w~  286 (288)
                      .     ++++|+
T Consensus       298 ~~~~~~~v~~~~  309 (902)
T 2oaj_A          298 SRGDNQSLTMID  309 (902)
T ss_dssp             TTSSCCCEEEEE
T ss_pred             CCCCCceEEEEe
Confidence            3     788887

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.9e-30  Score=230.71  Aligned_cols=240  Identities=24%  Similarity=0.387  Sum_probs=189.0

Q ss_pred             eEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceE
Q 036510           14 VHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWI   93 (288)
Q Consensus        14 v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~   93 (288)
                      .+.|.||++ ++|+.| .|++|+|||...+....+..+.+|...|++|+|+++  |++|++|+.|++|+|||+.++.   
T Consensus       108 ~~~l~wS~~-n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspd--g~~lasgs~Dg~v~iWd~~~~~---  180 (420)
T 4gga_A          108 LNLVDWSSG-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE--GNYLAVGTSSAEVQLWDVQQQK---  180 (420)
T ss_dssp             CBCEEECTT-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT--SSEEEEEETTSCEEEEETTTTE---
T ss_pred             ceeEEECCC-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCC--CCEEEEEECCCeEEEEEcCCCc---
Confidence            455889975 466654 599999999865433334455678889999999864  8999999999999999998764   


Q ss_pred             EeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccC
Q 036510           94 KDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLD  173 (288)
Q Consensus        94 ~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~  173 (288)
                      ....+.+|...+.++++++    .++++|+.|+.+++||.+....  ......+|...+..+.|+|++            
T Consensus       181 ~~~~~~~h~~~v~~~s~~~----~~l~sgs~d~~i~~~d~~~~~~--~~~~~~~h~~~~~~~~~~~~g------------  242 (420)
T 4gga_A          181 RLRNMTSHSARVGSLSWNS----YILSSGSRSGHIHHHDVRVAEH--HVATLSGHSQEVCGLRWAPDG------------  242 (420)
T ss_dssp             EEEEECCCSSCEEEEEEET----TEEEEEETTSEEEEEETTSSSC--EEEEEECCSSCEEEEEECTTS------------
T ss_pred             EEEEEeCCCCceEEEeeCC----CEEEEEeCCCceeEeeecccce--eeEEecccccceeeeeecCCC------------
Confidence            4566788999999999875    4789999999999999876533  334567899999999999987            


Q ss_pred             CCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEE--eCCCcEEEEEeecCCCcccc
Q 036510          174 PVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASA--SEDGKVIIWTVAREGDQWEG  251 (288)
Q Consensus       174 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~--s~D~~i~iw~~~~~~~~~~~  251 (288)
                        .++++++.|+.+++||...+......+.....|...|.++.|+|..   ..+++++  +.|++|++||+....   ..
T Consensus       243 --~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~---~~~la~~~gs~D~~I~iwd~~t~~---~~  314 (420)
T 4gga_A          243 --RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ---SNVLATGGGTSDRHIRIWNVCSGA---CL  314 (420)
T ss_dssp             --SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTC---TTEEEEEECTTTCEEEEEETTTTE---EE
T ss_pred             --CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCc---ccEEEEEeecCCCEEEEEeCCccc---cc
Confidence              7899999999999999977643323344567899999999999975   4566654  579999999987532   11


Q ss_pred             eEeeccccCeEEEEeecCCCEEEEEe--CCCcEEEeEc
Q 036510          252 KVLHDFKTPVYRVSWSLTGNILAVAD--GNNNVTLWEE  287 (288)
Q Consensus       252 ~~~~~~~~~i~~~~~spdg~~l~s~~--~d~~v~~w~~  287 (288)
                      .. ......+.++.|+|+++.+++++  .|++|+|||.
T Consensus       315 ~~-~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~  351 (420)
T 4gga_A          315 SA-VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKY  351 (420)
T ss_dssp             EE-EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEET
T ss_pred             ee-eccccceeeeeecCCCCeEEEEEecCCCEEEEEEC
Confidence            12 23346799999999999998876  6899999995

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.7e-31  Score=228.56  Aligned_cols=222  Identities=23%  Similarity=0.369  Sum_probs=176.9

Q ss_pred             eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC
Q 036510           46 QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD  125 (288)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d  125 (288)
                      +.+..+.+|...|.+++|+++  +.+|++++.|+.|+||++... .......+.+|...|++++|+|+..+.++++|+.|
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d   78 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYY--GKRLATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD   78 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSS--SSEEEEEETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             CccEEecCCcccEEEEEEcCC--CCEEEEEECCCcEEEEecCCC-cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC
Confidence            345678999999999999864  889999999999999998643 23355667889999999999876446789999999


Q ss_pred             CcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCC--CCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeee
Q 036510          126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPS--TAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFP  203 (288)
Q Consensus       126 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~--~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  203 (288)
                      +.|++||++.+. +........|...|.++.|+|+  +              .+|++++.|+.|++||+..+...  ...
T Consensus        79 g~v~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~--------------~~l~~~~~d~~i~v~d~~~~~~~--~~~  141 (379)
T 3jrp_A           79 GKVLIWKEENGR-WSQIAVHAVHSASVNSVQWAPHEYG--------------PLLLVASSDGKVSVVEFKENGTT--SPI  141 (379)
T ss_dssp             SCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGC--------------SEEEEEETTSEEEEEECCTTSCC--CEE
T ss_pred             CEEEEEEcCCCc-eeEeeeecCCCcceEEEEeCCCCCC--------------CEEEEecCCCcEEEEecCCCCce--eeE
Confidence            999999998653 2234455678899999999998  5              68999999999999999875221  223


Q ss_pred             ccccCCcceEEEEecCCCCC---------CCcEEEEEeCCCcEEEEEeecCCCcc-cceEeeccccCeEEEEeecC---C
Q 036510          204 ALQMHTDWVRDVAWAPNLGL---------PKSTIASASEDGKVIIWTVAREGDQW-EGKVLHDFKTPVYRVSWSLT---G  270 (288)
Q Consensus       204 ~~~~h~~~V~~v~~sp~~~~---------~~~~l~s~s~D~~i~iw~~~~~~~~~-~~~~~~~~~~~i~~~~~spd---g  270 (288)
                      .+.+|...|.++.|+|....         .+.+|++++.|+.|++||++...... ....+..|..+|.+++|+|+   +
T Consensus       142 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~  221 (379)
T 3jrp_A          142 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR  221 (379)
T ss_dssp             EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred             EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCC
Confidence            45789999999999993100         14689999999999999998643221 12344567789999999999   8


Q ss_pred             CEEEEEeCCCcEEEeEc
Q 036510          271 NILAVADGNNNVTLWEE  287 (288)
Q Consensus       271 ~~l~s~~~d~~v~~w~~  287 (288)
                      ++|++++.|++|+|||.
T Consensus       222 ~~l~s~~~dg~i~iwd~  238 (379)
T 3jrp_A          222 SYLASVSQDRTCIIWTQ  238 (379)
T ss_dssp             EEEEEEETTSCEEEEEE
T ss_pred             CeEEEEeCCCEEEEEeC
Confidence            99999999999999995

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.2e-31  Score=229.03  Aligned_cols=238  Identities=14%  Similarity=0.195  Sum_probs=191.0

Q ss_pred             cccccccceEEEEEcCCCC-EEEEeeCCCcEEEEEe-CCCCceeeEEEec--cccCeEEEEecCCCCCCEEEEeeCCCcE
Q 036510            6 IETGHEDTVHDVAMDYYGK-RLATASSDYSIKIIGV-GNNTSQHLAKLSG--HKGAVWEVAWAHPKFGSILASCSFDGTV   81 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~-~l~s~~~d~~i~lwd~-~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~d~~v   81 (288)
                      ...+|...|.+++|+|+++ +|++|+.|+.|++|++ ...   ....+.+  |...|.+++|++   +.+|++++.|+.|
T Consensus        51 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~---~~~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i  124 (342)
T 1yfq_A           51 QSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP---SFQALTNNEANLGICRICKYG---DDKLIAASWDGLI  124 (342)
T ss_dssp             EEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS---SEEECBSCCCCSCEEEEEEET---TTEEEEEETTSEE
T ss_pred             eeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC---ceEeccccCCCCceEEEEeCC---CCEEEEEcCCCeE
Confidence            3458999999999999999 9999999999999998 654   2467788  999999999985   6899999999999


Q ss_pred             EEeecCC---------CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecC-CCCeeeEEeeccCCCC
Q 036510           82 IIWKEGN---------SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA-DGGWDTSRIDQAHPVG  151 (288)
Q Consensus        82 ~iwd~~~---------~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~  151 (288)
                      ++||++.         ..   ....+. |...|.+++|+|+  .  +++++.|+.|++||++. ... ........|...
T Consensus       125 ~iwd~~~~~~~~~~~~~~---~~~~~~-~~~~v~~~~~~~~--~--l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~  195 (342)
T 1yfq_A          125 EVIDPRNYGDGVIAVKNL---NSNNTK-VKNKIFTMDTNSS--R--LIVGMNNSQVQWFRLPLCEDD-NGTIEESGLKYQ  195 (342)
T ss_dssp             EEECHHHHTTBCEEEEES---CSSSSS-SCCCEEEEEECSS--E--EEEEESTTEEEEEESSCCTTC-CCEEEECSCSSC
T ss_pred             EEEcccccccccccccCC---eeeEEe-eCCceEEEEecCC--c--EEEEeCCCeEEEEECCccccc-cceeeecCCCCc
Confidence            9999865         32   223343 7889999999986  2  88899999999999987 432 122344567888


Q ss_pred             eeEEEeCC-CCCCCceecccccCCCceeEEeecCCcEEEEEEeCC--ceeeeeeeccccCCc---------ceEEEEecC
Q 036510          152 VTSVSWAP-STAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNG--IWKMDCFPALQMHTD---------WVRDVAWAP  219 (288)
Q Consensus       152 v~~i~~~p-~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~h~~---------~V~~v~~sp  219 (288)
                      +.++.|+| ++              +++++++.|+.|++||+...  ....+....+..|..         .|.+++|+|
T Consensus       196 i~~i~~~~~~~--------------~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  261 (342)
T 1yfq_A          196 IRDVALLPKEQ--------------EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP  261 (342)
T ss_dssp             EEEEEECSGGG--------------CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT
T ss_pred             eeEEEECCCCC--------------CEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcC
Confidence            99999999 76              78999999999999998764  100123334555644         899999999


Q ss_pred             CCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeecc-ccCeEEEEeecCCCEEEEEeCCCc
Q 036510          220 NLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDF-KTPVYRVSWSLTGNILAVADGNNN  281 (288)
Q Consensus       220 ~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~-~~~i~~~~~spdg~~l~s~~~d~~  281 (288)
                      ++    .+|++++.|+.|++||+....   ....+..| ..+|.+++  |+|++|++|+.|++
T Consensus       262 ~~----~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          262 RH----KFLYTAGSDGIISCWNLQTRK---KIKNFAKFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             TT----CCEEEEETTSCEEEEETTTTE---EEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             CC----CEEEEecCCceEEEEcCccHh---HhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence            74    689999999999999987532   22345566 78899999  99999999999998

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-31  Score=242.03  Aligned_cols=237  Identities=15%  Similarity=0.146  Sum_probs=181.2

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCC---------------------------ceeeEEEe-ccccCeEEEE
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNT---------------------------SQHLAKLS-GHKGAVWEVA   62 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~---------------------------~~~~~~~~-~h~~~v~~~~   62 (288)
                      +.+|.+|+|+|||+++||+|.|++|+  |.....                           .+....+. +|...|++++
T Consensus        15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~va   92 (588)
T 2j04_A           15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCK   92 (588)
T ss_dssp             SSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEE
T ss_pred             hccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEE
Confidence            58899999999999999999999995  321100                           00011122 5678899999


Q ss_pred             ecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCC-----ceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCC
Q 036510           63 WAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKS-----SVNSIDWAPHELGLCLACGSSDGNISVFTARADG  137 (288)
Q Consensus        63 ~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~-----~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~  137 (288)
                      |||+  |.+||+++.||+|++|+...     ....+. |..     .|.+++|+|+  +.+||+|+.||+|++||+..+.
T Consensus        93 wSPd--G~~LAs~s~dg~V~iwd~~~-----~l~~l~-~~~~~~~~sv~svafSPD--G~~LAsgs~DGtVkIWd~~~~~  162 (588)
T 2j04_A           93 PSPI--DDWMAVLSNNGNVSVFKDNK-----MLTNLD-SKGNLSSRTYHCFEWNPI--ESSIVVGNEDGELQFFSIRKNS  162 (588)
T ss_dssp             ECSS--SSCEEEEETTSCEEEEETTE-----EEEECC-CSSCSTTTCEEEEEECSS--SSCEEEEETTSEEEEEECCCCT
T ss_pred             ECCC--CCEEEEEeCCCcEEEEeCCc-----eeeecc-CCCccccccEEEEEEcCC--CCEEEEEcCCCEEEEEECCCCc
Confidence            9975  89999999999999999532     334455 555     4999999998  7889999999999999998653


Q ss_pred             C----eeeEEe----eccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecc-ccC
Q 036510          138 G----WDTSRI----DQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPAL-QMH  208 (288)
Q Consensus       138 ~----~~~~~~----~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~h  208 (288)
                      .    +-....    ..+|...|.+++|+|+               . +++++.|++|++||+.++.. .+....+ .+|
T Consensus       163 l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd---------------g-Laass~D~tVrlWd~~~~~~-~~~~~tL~~~h  225 (588)
T 2j04_A          163 ENTPEFYFESSIRLSDAGSKDWVTHIVWYED---------------V-LVAALSNNSVFSMTVSASSH-QPVSRMIQNAS  225 (588)
T ss_dssp             TTCCCCEEEEEEECSCTTCCCCEEEEEEETT---------------E-EEEEETTCCEEEECCCSSSS-CCCEEEEECCC
T ss_pred             cccccceeeeeeecccccccccEEEEEEcCC---------------c-EEEEeCCCeEEEEECCCCcc-ccceeeecccc
Confidence            2    011222    2678889999999997               4 78899999999999977531 0122345 478


Q ss_pred             CcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEe--ecCCCEEEEEeCCCcEEEeE
Q 036510          209 TDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSW--SLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       209 ~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~--spdg~~l~s~~~d~~v~~w~  286 (288)
                      ...|.+|+|+ +     ++||+++ |++|++||+....   ......+|.+.+++++|  +||++.|++++.||+ +||.
T Consensus       226 ~~~V~svaFs-g-----~~LASa~-~~tIkLWd~~~~~---~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~  294 (588)
T 2j04_A          226 RRKITDLKIV-D-----YKVVLTC-PGYVHKIDLKNYS---ISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLL  294 (588)
T ss_dssp             SSCCCCEEEE-T-----TEEEEEC-SSEEEEEETTTTE---EEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred             cCcEEEEEEE-C-----CEEEEEe-CCeEEEEECCCCe---EEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence            8899999999 3     5788887 6999999987431   11223378899999999  999999999999999 9997


Q ss_pred             c
Q 036510          287 E  287 (288)
Q Consensus       287 ~  287 (288)
                      .
T Consensus       295 ~  295 (588)
T 2j04_A          295 E  295 (588)
T ss_dssp             S
T ss_pred             e
Confidence            4

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.1e-29  Score=216.10  Aligned_cols=242  Identities=23%  Similarity=0.365  Sum_probs=186.1

Q ss_pred             eEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceE
Q 036510           14 VHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWI   93 (288)
Q Consensus        14 v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~   93 (288)
                      .+.|+||+++ +|++ +.|++|+|||+..+....+..+.+|...|.+++|+++  +++|++|+.|++|++|++.++.   
T Consensus        28 ~~~l~WS~~~-~lAv-g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~--~~~l~sgs~Dg~v~iw~~~~~~---  100 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE--GNYLAVGTSSAEVQLWDVQQQK---  100 (318)
T ss_dssp             CBCEEECTTS-EEEE-EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT--SSEEEEEETTSEEEEEETTTTE---
T ss_pred             ceEEEECCCC-EEEE-EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCC--CCEEEEEECCCcEEEeecCCce---
Confidence            4678999876 6655 5699999999864432223344578888999999865  8999999999999999998765   


Q ss_pred             EeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccC
Q 036510           94 KDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLD  173 (288)
Q Consensus        94 ~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~  173 (288)
                      ....+.+|...+.++++.+    .++++|+.++.+++|+......  ......+|...+..+.|.+++            
T Consensus       101 ~~~~~~~h~~~~~~~~~~~----~~l~s~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------------  162 (318)
T 4ggc_A          101 RLRNMTSHSARVGSLSWNS----YILSSGSRSGHIHHHDVRVAEH--HVATLSGHSQEVCGLRWAPDG------------  162 (318)
T ss_dssp             EEEEEECCSSCEEEEEEET----TEEEEEETTSEEEEEETTSSSC--EEEEEECCSSCEEEEEECTTS------------
T ss_pred             eEEEecCccceEEEeecCC----CEEEEEecCCceEeeecCCCce--eEEEEcCccCceEEEEEcCCC------------
Confidence            4566788998888887654    4689999999999999876432  334556889999999999987            


Q ss_pred             CCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceE
Q 036510          174 PVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKV  253 (288)
Q Consensus       174 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~  253 (288)
                        .+|++++.|++|++||++++............|...|.++.++|+... .-.+++++.|++|++|+.....    ...
T Consensus       163 --~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~i~lwd~~~~~----~~~  235 (318)
T 4ggc_A          163 --RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSN-VLATGGGTSDRHIRIWNVCSGA----CLS  235 (318)
T ss_dssp             --SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTT-EEEEEECTTTCEEEEEETTTCC----EEE
T ss_pred             --CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCc-EEEEEecCCCCEEEEEeccccc----ccc
Confidence              789999999999999998754332334445678888999999997521 1123567789999999976532    122


Q ss_pred             eeccccCeEEEEeecCCCEEEEEe--CCCcEEEeEc
Q 036510          254 LHDFKTPVYRVSWSLTGNILAVAD--GNNNVTLWEE  287 (288)
Q Consensus       254 ~~~~~~~i~~~~~spdg~~l~s~~--~d~~v~~w~~  287 (288)
                      ...+...+..+.|+|+++.+++++  .|++|+|||.
T Consensus       236 ~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~  271 (318)
T 4ggc_A          236 AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKY  271 (318)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEET
T ss_pred             cccceeeeeeeeecccccceEEEEEcCCCEEEEEEC
Confidence            334567899999999999988765  7999999995

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.98  E-value=2e-30  Score=233.79  Aligned_cols=233  Identities=14%  Similarity=0.111  Sum_probs=177.5

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEecccc-----CeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510            9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKG-----AVWEVAWAHPKFGSILASCSFDGTVII   83 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~~l~s~s~d~~v~i   83 (288)
                      +|++.|.+++|||+|++||+++.|++|++||..    .++..+. |+.     .|.+++|+|+  |++|++|+.||+|+|
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~----~~l~~l~-~~~~~~~~sv~svafSPD--G~~LAsgs~DGtVkI  155 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDN----KMLTNLD-SKGNLSSRTYHCFEWNPI--ESSIVVGNEDGELQF  155 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETT----EEEEECC-CSSCSTTTCEEEEEECSS--SSCEEEEETTSEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC----ceeeecc-CCCccccccEEEEEEcCC--CCEEEEEcCCCEEEE
Confidence            678999999999999999999999999999953    2566677 776     4999999875  999999999999999


Q ss_pred             eecCCCCc----eEEeEEe----ecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEee-ccCCCCeeE
Q 036510           84 WKEGNSNE----WIKDHVF----EDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRID-QAHPVGVTS  154 (288)
Q Consensus        84 wd~~~~~~----~~~~~~~----~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~v~~  154 (288)
                      ||+..+..    ++...++    .+|...|.+++|+|+  +  +++++.|+++++|++..+......+.. .+|...|.+
T Consensus       156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd--g--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~s  231 (588)
T 2j04_A          156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED--V--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITD  231 (588)
T ss_dssp             EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT--E--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCC
T ss_pred             EECCCCccccccceeeeeeecccccccccEEEEEEcCC--c--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEE
Confidence            99976531    2344555    568889999999997  4  778889999999999765421112233 478889999


Q ss_pred             EEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEe--cCCCCCCCcEEEEEe
Q 036510          155 VSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAW--APNLGLPKSTIASAS  232 (288)
Q Consensus       155 i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~--sp~~~~~~~~l~s~s  232 (288)
                      ++|+  +              +.|++++ +++|++||+.++.    ......+|.+.|.+|.|  +|++    +.|++++
T Consensus       232 vaFs--g--------------~~LASa~-~~tIkLWd~~~~~----~~~~~~gh~~~V~~va~~~s~d~----~~La~a~  286 (588)
T 2j04_A          232 LKIV--D--------------YKVVLTC-PGYVHKIDLKNYS----ISSLKTGSLENFHIIPLNHEKES----TILLMSN  286 (588)
T ss_dssp             EEEE--T--------------TEEEEEC-SSEEEEEETTTTE----EEEEECSCCSCCCEEEETTCSSC----EEEEECS
T ss_pred             EEEE--C--------------CEEEEEe-CCeEEEEECCCCe----EEEEEcCCCceEEEEEeeeCCCC----CEEEEEc
Confidence            9998  3              5688876 7999999987753    21122379999999999  9974    6899999


Q ss_pred             CCCcEEEEEeec----CCCc-----------ccc--eEee--ccccCeEEEEeecCCCEEEEEeC
Q 036510          233 EDGKVIIWTVAR----EGDQ-----------WEG--KVLH--DFKTPVYRVSWSLTGNILAVADG  278 (288)
Q Consensus       233 ~D~~i~iw~~~~----~~~~-----------~~~--~~~~--~~~~~i~~~~~spdg~~l~s~~~  278 (288)
                      .||+ ++|....    +...           +..  ..+.  +....|++++|||||+.+|+++.
T Consensus       287 edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          287 KTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             SCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred             CCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEe
Confidence            9999 9998631    1000           000  0011  11235899999999999999863

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=2.3e-30  Score=224.08  Aligned_cols=251  Identities=19%  Similarity=0.236  Sum_probs=184.7

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      .+.+|...|.+++|+|++++|++++.|++|++||+...  +. ..+.+|...|++++|.+.+++.+|++++.|+.|++||
T Consensus        81 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~--~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd  157 (368)
T 3mmy_A           81 AQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN--QA-IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD  157 (368)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EE-EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEEC
T ss_pred             EeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCC--Cc-eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEE
Confidence            45689999999999999999999999999999998643  33 3467899999999994223488999999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      ++++..   ...+..| ..+.++.+.+.    .+++++.++.+.+|+++.... ........+...+.++.+.+....  
T Consensus       158 ~~~~~~---~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--  226 (368)
T 3mmy_A          158 TRSSNP---MMVLQLP-ERCYCADVIYP----MAVVATAERGLIVYQLENQPS-EFRRIESPLKHQHRCVAIFKDKQN--  226 (368)
T ss_dssp             SSCSSC---SEEEECS-SCEEEEEEETT----EEEEEEGGGCEEEEECSSSCE-EEEECCCSCSSCEEEEEEEECTTS--
T ss_pred             CCCCcE---EEEEecC-CCceEEEecCC----eeEEEeCCCcEEEEEeccccc-hhhhccccccCCCceEEEcccCCC--
Confidence            987653   3345444 46777777653    467788899999999976432 111222223334455554443310  


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCc------------ceEEEEecCCCCCCCcEEEEEeC
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTD------------WVRDVAWAPNLGLPKSTIASASE  233 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~------------~V~~v~~sp~~~~~~~~l~s~s~  233 (288)
                              ....+++++.|+.|++||+..... ......+.+|..            .|.+++|+|++    .+|++|+.
T Consensus       227 --------~~~~~~~~~~dg~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~----~~l~s~~~  293 (368)
T 3mmy_A          227 --------KPTGFALGSIEGRVAIHYINPPNP-AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH----GTLATVGS  293 (368)
T ss_dssp             --------CEEEEEEEETTSEEEEEESSCSCH-HHHSEEEECSEEC----CCCEEECCEEEEEECTTT----CCEEEEET
T ss_pred             --------CCCeEEEecCCCcEEEEecCCCCc-cccceeeeeeecccccccccccccceEEEEEecCC----CEEEEEcc
Confidence                    013389999999999999976521 022334455554            79999999984    68999999


Q ss_pred             CCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          234 DGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       234 D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      |+.|++||+....   ....+..|..+|.+++|+|||++|++|+.|+..+.|+
T Consensus       294 dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~  343 (368)
T 3mmy_A          294 DGRFSFWDKDART---KLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHE  343 (368)
T ss_dssp             TSCEEEEETTTTE---EEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred             CCeEEEEECCCCc---EEEEecCCCCCceEEEECCCCCeEEEEeccccccccc
Confidence            9999999987431   2234456778999999999999999999988655444

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=2.1e-29  Score=214.43  Aligned_cols=246  Identities=10%  Similarity=-0.016  Sum_probs=160.2

Q ss_pred             EEEEeeCCCcEEEEEeCCC-CceeeEEEeccccCeEEEEecCC-----------------------CC----CCEEEEee
Q 036510           25 RLATASSDYSIKIIGVGNN-TSQHLAKLSGHKGAVWEVAWAHP-----------------------KF----GSILASCS   76 (288)
Q Consensus        25 ~l~s~~~d~~i~lwd~~~~-~~~~~~~~~~h~~~v~~~~~~~~-----------------------~~----~~~l~s~s   76 (288)
                      -+++++. .+|+||+.... ..+.++++.+|..+|..+.++++                       ++    ++++++++
T Consensus        56 ~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g  134 (356)
T 2w18_A           56 CIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSG  134 (356)
T ss_dssp             EEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEE
T ss_pred             EEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCC
Confidence            4666665 48999998543 23678888888877666655541                       13    45666654


Q ss_pred             C--------------------CCcEEEeecCCCCceEEeEEeecCCCceeEEEecc-CCCCeEEEEEeCCCcEEEEeecC
Q 036510           77 F--------------------DGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAP-HELGLCLACGSSDGNISVFTARA  135 (288)
Q Consensus        77 ~--------------------d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~~~l~sg~~d~~i~i~d~~~  135 (288)
                      .                    |+.|++|++.....  ....+.+|...+..++|+| ++.+.++++|+.|++|+|||+++
T Consensus       135 ~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~--~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T  212 (356)
T 2w18_A          135 NIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGG--GKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKT  212 (356)
T ss_dssp             EEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSC--EEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTT
T ss_pred             CeEEEEecCCCcEEEecccCCCCcEEEEEECCCCc--eeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCC
Confidence            3                    88899998854332  2334567888899999988 44478899999999999999988


Q ss_pred             CCCeeeEEeeccC---CCCeeEEEeCCCCCCCceecccccC-CCceeEEeecCCcEEEEEEeCCceeeeeeec-cccCCc
Q 036510          136 DGGWDTSRIDQAH---PVGVTSVSWAPSTAPGALVGSGFLD-PVQKLCSGGCDNTVKVWKLYNGIWKMDCFPA-LQMHTD  210 (288)
Q Consensus       136 ~~~~~~~~~~~~~---~~~v~~i~~~p~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~h~~  210 (288)
                      +....   .+++|   ...+.++.|+|++..   +.....+ ....+++|+.|++|++||..++......... ..+|..
T Consensus       213 Gk~l~---tL~g~~~~v~~v~~vafSpdG~~---lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~  286 (356)
T 2w18_A          213 GQLLK---KMHIDDSYQASVCHKAYSEMGLL---FIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAG  286 (356)
T ss_dssp             CCEEE---EEECCC---CCCEEEEEEETTEE---EEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCC
T ss_pred             CcEEE---EEcCCCcceeeeEEEEECCCCCE---EEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcc
Confidence            75433   23333   346778899998621   1000000 1124689999999999998876321111111 147766


Q ss_pred             ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCe-EEEEeecCCCEEEEEeCCCcEEEeEcC
Q 036510          211 WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPV-YRVSWSLTGNILAVADGNNNVTLWEEA  288 (288)
Q Consensus       211 ~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i-~~~~~spdg~~l~s~~~d~~v~~w~~~  288 (288)
                      .+.+..++      +.++|+|+.|++|+|||++..+   ....+.+|...+ .+++|||||++|++|+.|++|||||..
T Consensus       287 ~~lsg~~s------g~~lASgS~DgTIkIWDl~tGk---~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          287 RFLEGDVK------DHCAAAILTSGTIAIWDLLLGQ---CTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             CEEEEEEE------TTEEEEEETTSCEEEEETTTCS---EEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred             eeEccccC------CCEEEEEcCCCcEEEEECCCCc---EEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence            65555554      2479999999999999997542   123445565544 468999999999999999999999963

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=5e-29  Score=213.44  Aligned_cols=224  Identities=21%  Similarity=0.354  Sum_probs=175.5

Q ss_pred             ccccccceEEEEEcC--CCCEEEEeeCCCcEEEEEeCCCCc-------eeeEEEeccccCeEEEEecCCCCCCEEEEeeC
Q 036510            7 ETGHEDTVHDVAMDY--YGKRLATASSDYSIKIIGVGNNTS-------QHLAKLSGHKGAVWEVAWAHPKFGSILASCSF   77 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~--~g~~l~s~~~d~~i~lwd~~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~   77 (288)
                      +.+|...|.+++|+|  ++++|++|+.|++|++||+..+..       +.+..+.+|...|.+++|+++..+.+|++++.
T Consensus        53 ~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~  132 (351)
T 3f3f_A           53 WRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN  132 (351)
T ss_dssp             EECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             eccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC
Confidence            458999999999999  699999999999999999964321       45778889999999999986422789999999


Q ss_pred             CCcEEEeecCCCCce---EEeEE-------eecCCCceeEEEeccCC-CCeEEEEEeCCCcEEEEeecCCCCeeeEEeec
Q 036510           78 DGTVIIWKEGNSNEW---IKDHV-------FEDHKSSVNSIDWAPHE-LGLCLACGSSDGNISVFTARADGGWDTSRIDQ  146 (288)
Q Consensus        78 d~~v~iwd~~~~~~~---~~~~~-------~~~h~~~v~~l~~~p~~-~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~  146 (288)
                      |+.|++||+++....   .....       ...|...+.+++|+|+. .+.++++++.|+.+.+|+...+ .........
T Consensus       133 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~  211 (351)
T 3f3f_A          133 DGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG-KLHVAAKLP  211 (351)
T ss_dssp             TCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS-CEEEEEECC
T ss_pred             CCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC-ceeeeeecC
Confidence            999999998765421   10000       11578899999999972 2567899999999966665443 334445667


Q ss_pred             cCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCce-----------------------------
Q 036510          147 AHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIW-----------------------------  197 (288)
Q Consensus       147 ~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----------------------------  197 (288)
                      +|...|.++.|+|++...          .++|++++.|+.|++||++.+..                             
T Consensus       212 ~h~~~i~~~~~~p~~~~~----------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (351)
T 3f3f_A          212 GHKSLIRSISWAPSIGRW----------YQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSD  281 (351)
T ss_dssp             CCCSCEEEEEECCCSSCS----------SEEEEEEETTSCEEEEEEEECC------------------------------
T ss_pred             CCCcceeEEEECCCCCCc----------ceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccc
Confidence            899999999999986210          15799999999999999986411                             


Q ss_pred             -------------eeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510          198 -------------KMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE  245 (288)
Q Consensus       198 -------------~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~  245 (288)
                                   ..+.+..+.+|...|.+++|+|++    .+|++|+.|+.|++|+++..
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~----~~l~s~~~dg~v~iw~~~~~  338 (351)
T 3f3f_A          282 SNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG----TILSSAGDDGKVRLWKATYS  338 (351)
T ss_dssp             ---------CCSEEEEEEEEECTTSSCEEEEEECSSS----CCEEEEETTSCEEEEEECTT
T ss_pred             cccceeeeecccccccEEEEEecccccEEEEEEcCCC----CEEEEecCCCcEEEEecCcC
Confidence                         124556678899999999999984    68999999999999999854

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=3e-29  Score=220.20  Aligned_cols=248  Identities=17%  Similarity=0.253  Sum_probs=165.3

Q ss_pred             cccccceEEEEEcC-CCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCC-CCCEEEEeeCCCcEEEee
Q 036510            8 TGHEDTVHDVAMDY-YGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPK-FGSILASCSFDGTVIIWK   85 (288)
Q Consensus         8 ~~h~~~v~~~~~s~-~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~s~d~~v~iwd   85 (288)
                      .+|...|.+++|+| ++++|++++.|++|++||+...  +.+..+. |...+..+.|.+.. ++.++++++.|+.|++||
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  172 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL--QTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD  172 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT--EEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC--ccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence            36999999999999 7789999999999999998643  4455544 77889999998642 456999999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCe-eeE------------EeeccCCCCe
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGW-DTS------------RIDQAHPVGV  152 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~-~~~------------~~~~~~~~~v  152 (288)
                      +.++.   ....+..|...|.+++|+|++ ..++++|+.|+.|++||++..... ...            .....|...|
T Consensus       173 ~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  248 (408)
T 4a11_B          173 LKSGS---CSHILQGHRQEILAVSWSPRY-DYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV  248 (408)
T ss_dssp             SSSSC---CCEEECCCCSCEEEEEECSSC-TTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCE
T ss_pred             CCCcc---eeeeecCCCCcEEEEEECCCC-CcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCce
Confidence            98765   345677899999999999984 336889999999999999865321 110            0114678889


Q ss_pred             eEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCcee----------------------------------
Q 036510          153 TSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWK----------------------------------  198 (288)
Q Consensus       153 ~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~----------------------------------  198 (288)
                      .++.|+|++              .+|++++.|+.|++||+.++...                                  
T Consensus       249 ~~~~~~~~~--------------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (408)
T 4a11_B          249 NGLCFTSDG--------------LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS  314 (408)
T ss_dssp             EEEEECTTS--------------SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETT
T ss_pred             eEEEEcCCC--------------CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCC
Confidence            999999987              55666666666666666443110                                  


Q ss_pred             ---------eeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeec-
Q 036510          199 ---------MDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSL-  268 (288)
Q Consensus       199 ---------~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~sp-  268 (288)
                               .+++..+.+|...|.+++|+|++    .+|++|+.|+.|++|+++..+.      +...........++| 
T Consensus       315 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~s~~~dg~i~iw~~~~~~~------~~~~~~~~~~~~~~~~  384 (408)
T 4a11_B          315 TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNF----QELYSGSRDCNILAWVPSLYEP------VPDDDETTTKSQLNPA  384 (408)
T ss_dssp             EEEEEETTTCCEEEEECCCSSCEEEEEEETTT----TEEEEEETTSCEEEEEECC-------------------------
T ss_pred             EEEEEECcCCcceeeeccCCCeEEEEEEcCCC----CEEEEECCCCeEEEEeCCCCCc------cCCCCceEeccccccc
Confidence                     13445667899999999999984    7899999999999999976421      111111122234444 


Q ss_pred             CCCEEEEEeCCCcEEEeE
Q 036510          269 TGNILAVADGNNNVTLWE  286 (288)
Q Consensus       269 dg~~l~s~~~d~~v~~w~  286 (288)
                      +...+.+.+.|+.+++|+
T Consensus       385 ~~~~~~~~~~~~~~~~W~  402 (408)
T 4a11_B          385 FEDAWSSSDEEGGTSAWS  402 (408)
T ss_dssp             ------------------
T ss_pred             cceeecccCccCceeecC
Confidence            344566777899999997

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.2e-29  Score=219.53  Aligned_cols=238  Identities=12%  Similarity=0.074  Sum_probs=172.7

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCcEEEEEeCCC-------CceeeEEEe-ccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510           12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNN-------TSQHLAKLS-GHKGAVWEVAWAHPKFGSILASCSFDGTVII   83 (288)
Q Consensus        12 ~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~-------~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i   83 (288)
                      ..|.++.|+|+   +++++.|+++++|+....       ..+.+..+. +|.+.|.+++|++..++++|++++.|++|++
T Consensus        77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~  153 (343)
T 3lrv_A           77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF  153 (343)
T ss_dssp             ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred             CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence            44555666766   999999999999976421       223233433 6778999999986224899999999999999


Q ss_pred             eecCCCCceEEeEEe-ecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeecc-CCCCeeEEEeCCCC
Q 036510           84 WKEGNSNEWIKDHVF-EDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQA-HPVGVTSVSWAPST  161 (288)
Q Consensus        84 wd~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~v~~i~~~p~~  161 (288)
                      ||+.++..   .... ..|...|.+++|+|+  +.++++|+.|+.|++||++++...  ....+. |...|.++.|+|++
T Consensus       154 wd~~~~~~---~~~~~~~~~~~i~~~~~~pd--g~~lasg~~dg~i~iwd~~~~~~~--~~~~~~~h~~~v~~l~fs~~g  226 (343)
T 3lrv_A          154 QSYEDDSQ---YIVHSAKSDVEYSSGVLHKD--SLLLALYSPDGILDVYNLSSPDQA--SSRFPVDEEAKIKEVKFADNG  226 (343)
T ss_dssp             EESSSSCE---EEEECCCSSCCCCEEEECTT--SCEEEEECTTSCEEEEESSCTTSC--CEECCCCTTSCEEEEEECTTS
T ss_pred             EECCCCcE---EEEEecCCCCceEEEEECCC--CCEEEEEcCCCEEEEEECCCCCCC--ccEEeccCCCCEEEEEEeCCC
Confidence            99987653   2223 345568999999998  678999999999999999876542  122344 89999999999987


Q ss_pred             CCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceE--EEEecCCCCCCCcEEEEEeC-CCcEE
Q 036510          162 APGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVR--DVAWAPNLGLPKSTIASASE-DGKVI  238 (288)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~--~v~~sp~~~~~~~~l~s~s~-D~~i~  238 (288)
                                    .+|++++ |+.|++||++++... ..+..+..|...+.  +++|+|++    .+|++++. |+.|+
T Consensus       227 --------------~~l~s~~-~~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g----~~l~~~s~~d~~i~  286 (343)
T 3lrv_A          227 --------------YWMVVEC-DQTVVCFDLRKDVGT-LAYPTYTIPEFKTGTVTYDIDDSG----KNMIAYSNESNSLT  286 (343)
T ss_dssp             --------------SEEEEEE-SSBEEEEETTSSTTC-BSSCCCBC-----CCEEEEECTTS----SEEEEEETTTTEEE
T ss_pred             --------------CEEEEEe-CCeEEEEEcCCCCcc-eeecccccccccccceEEEECCCC----CEEEEecCCCCcEE
Confidence                          7889988 559999999875311 11222223444444  69999984    78999998 99999


Q ss_pred             EEEeecCCCcccceEeeccccCeEEEEeec---CCCEEEEEeCCCcEEEeE
Q 036510          239 IWTVAREGDQWEGKVLHDFKTPVYRVSWSL---TGNILAVADGNNNVTLWE  286 (288)
Q Consensus       239 iw~~~~~~~~~~~~~~~~~~~~i~~~~~sp---dg~~l~s~~~d~~v~~w~  286 (288)
                      +|+.......+..       .++..++|+|   +++.+++++.|++++++-
T Consensus       287 v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  330 (343)
T 3lrv_A          287 IYKFDKKTKNWTK-------DEESALCLQSDTADFTDMDVVCGDGGIAAIL  330 (343)
T ss_dssp             EEEECTTTCSEEE-------EEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred             EEEEcccccceEe-------cCceeEecCccccccceeEEEecCCceEEEE
Confidence            9998654322221       4677899999   999999999999998873

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9.2e-30  Score=242.20  Aligned_cols=223  Identities=24%  Similarity=0.309  Sum_probs=180.3

Q ss_pred             cccccccceEEEEEcCC--CCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510            6 IETGHEDTVHDVAMDYY--GKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVII   83 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~--g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i   83 (288)
                      .+.+|.+.|.+++|+++  +++|++|+.|++|++||+..+....+..+.+|...|++++|+++..+.+|++++.||+|++
T Consensus        48 ~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~v  127 (753)
T 3jro_A           48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV  127 (753)
T ss_dssp             EECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred             eccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEE
Confidence            45689999999999988  9999999999999999997654446788899999999999986433789999999999999


Q ss_pred             eecCCCCceEEeEEeecCCCceeEEEeccCC-----------CCeEEEEEeCCCcEEEEeecCCCCe-eeEEeeccCCCC
Q 036510           84 WKEGNSNEWIKDHVFEDHKSSVNSIDWAPHE-----------LGLCLACGSSDGNISVFTARADGGW-DTSRIDQAHPVG  151 (288)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-----------~~~~l~sg~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~  151 (288)
                      ||+...... ....+..|...|.+++|+|..           .+.++++|+.||.|++||++.+... .......+|...
T Consensus       128 wdl~~~~~~-~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~  206 (753)
T 3jro_A          128 VEFKENGTT-SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW  206 (753)
T ss_dssp             EECCSSSCC-CCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC
T ss_pred             EEeecCCCc-ceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCc
Confidence            999765332 234567899999999999941           2567999999999999999876432 333456789999


Q ss_pred             eeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCcee-eeeeeccccCCcceEEEEecCCCCCCCcEEEE
Q 036510          152 VTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWK-MDCFPALQMHTDWVRDVAWAPNLGLPKSTIAS  230 (288)
Q Consensus       152 v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s  230 (288)
                      |.++.|+|+...           +.+|++++.|+.|++||+.++... .........|...|.+++|+|++    .+|++
T Consensus       207 V~~l~~sp~~~~-----------~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg----~~l~s  271 (753)
T 3jro_A          207 VRDVAWSPTVLL-----------RSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG----NVLAL  271 (753)
T ss_dssp             EEEEEECCCCSS-----------SEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTT----CCEEE
T ss_pred             EEEEEeccCCCC-----------CCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCC----CEEEE
Confidence            999999998200           178999999999999999875211 11233445688899999999984    68999


Q ss_pred             EeCCCcEEEEEeec
Q 036510          231 ASEDGKVIIWTVAR  244 (288)
Q Consensus       231 ~s~D~~i~iw~~~~  244 (288)
                      |+.|+.|++|++..
T Consensus       272 ~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          272 SGGDNKVTLWKENL  285 (753)
T ss_dssp             ECSSSCEECCBCCS
T ss_pred             EcCCCEEEEEecCC
Confidence            99999999999873

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=2.4e-29  Score=224.41  Aligned_cols=219  Identities=25%  Similarity=0.381  Sum_probs=176.9

Q ss_pred             cccccccceEEEEEcCCCC-EEEEeeCCCcEEEEEeCCCCc-----eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCC
Q 036510            6 IETGHEDTVHDVAMDYYGK-RLATASSDYSIKIIGVGNNTS-----QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDG   79 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~-~l~s~~~d~~i~lwd~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~   79 (288)
                      .+.+|...|.+++|+|+++ +|++|+.|++|++|++.....     .....+.+|...|.+++|++. ++.+|++++.|+
T Consensus       176 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg  254 (430)
T 2xyi_A          176 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQ  254 (430)
T ss_dssp             EEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTS
T ss_pred             EecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCC
Confidence            4458999999999999988 999999999999999864211     124667799999999999863 478999999999


Q ss_pred             cEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCC
Q 036510           80 TVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAP  159 (288)
Q Consensus        80 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p  159 (288)
                      .|++||++..........+..|...|++++|+|++ ..++++|+.||.|++||++....  .......|...|.++.|+|
T Consensus       255 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~~l~tg~~dg~v~vwd~~~~~~--~~~~~~~h~~~v~~i~~sp  331 (430)
T 2xyi_A          255 KLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS-EFILATGSADKTVALWDLRNLKL--KLHSFESHKDEIFQVQWSP  331 (430)
T ss_dssp             EEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCTTS--CSEEEECCSSCEEEEEECS
T ss_pred             eEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCC-CCEEEEEeCCCeEEEEeCCCCCC--CeEEeecCCCCEEEEEECC
Confidence            99999998753222344566899999999999974 34789999999999999987432  2344557889999999999


Q ss_pred             CCCCCceecccccCCCceeEEeecCCcEEEEEEeCCcee----------eeeeeccccCCcceEEEEecCCCCCCCcEEE
Q 036510          160 STAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWK----------MDCFPALQMHTDWVRDVAWAPNLGLPKSTIA  229 (288)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~----------~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~  229 (288)
                      ++.             .+|++++.|+.|+|||+......          .+.+..+.+|...|++++|+|+.   ..+|+
T Consensus       332 ~~~-------------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~---~~~l~  395 (430)
T 2xyi_A          332 HNE-------------TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE---PWIIC  395 (430)
T ss_dssp             SCT-------------TEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSS---TTEEE
T ss_pred             CCC-------------CEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCC---CCEEE
Confidence            873             57999999999999999762110          13455667899999999999985   23899


Q ss_pred             EEeCCCcEEEEEeec
Q 036510          230 SASEDGKVIIWTVAR  244 (288)
Q Consensus       230 s~s~D~~i~iw~~~~  244 (288)
                      +++.|+.|++|++..
T Consensus       396 s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          396 SVSEDNIMQVWQMAE  410 (430)
T ss_dssp             EEETTSEEEEEEECH
T ss_pred             EEECCCCEEEeEccc
Confidence            999999999999874

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.5e-28  Score=209.75  Aligned_cols=211  Identities=18%  Similarity=0.255  Sum_probs=171.7

Q ss_pred             eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC
Q 036510           46 QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD  125 (288)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d  125 (288)
                      .....+.+|...|++++|+++  +.+|++++.|+.|++||+.++.   ....+..|...|.+++|+|+  +.++++++.|
T Consensus        23 ~~~~~l~~h~~~v~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d   95 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQVKYNKE--GDLLFSCSKDSSASVWYSLNGE---RLGTLDGHTGTIWSIDVDCF--TKYCVTGSAD   95 (369)
T ss_dssp             EEEEEEECCSSCEEEEEECTT--SCEEEEEESSSCEEEEETTTCC---EEEEECCCSSCEEEEEECTT--SSEEEEEETT
T ss_pred             cccEEEEEeeceEEEEEEcCC--CCEEEEEeCCCEEEEEeCCCch---hhhhhhhcCCcEEEEEEcCC--CCEEEEEeCC
Confidence            345678999999999999864  8899999999999999997765   45667889999999999997  6789999999


Q ss_pred             CcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecC-----CcEEEEEEeCCceee-
Q 036510          126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCD-----NTVKVWKLYNGIWKM-  199 (288)
Q Consensus       126 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~-  199 (288)
                      +.|++||++++.....   .. +...+.++.|+|++              .++++++.+     +.|++||+..+.... 
T Consensus        96 g~i~iwd~~~~~~~~~---~~-~~~~v~~~~~~~~~--------------~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~  157 (369)
T 3zwl_B           96 YSIKLWDVSNGQCVAT---WK-SPVPVKRVEFSPCG--------------NYFLAILDNVMKNPGSINIYEIERDSATHE  157 (369)
T ss_dssp             TEEEEEETTTCCEEEE---EE-CSSCEEEEEECTTS--------------SEEEEEECCBTTBCCEEEEEEEEECTTTCC
T ss_pred             CeEEEEECCCCcEEEE---ee-cCCCeEEEEEccCC--------------CEEEEecCCccCCCCEEEEEEecCCcccee
Confidence            9999999987643222   22 77889999999987              778888888     999999997652110 


Q ss_pred             ------eeeeccccCCc--ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCC
Q 036510          200 ------DCFPALQMHTD--WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGN  271 (288)
Q Consensus       200 ------~~~~~~~~h~~--~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~  271 (288)
                            .....+..|..  .+.+++|+|+.    .+|++++.|+.|++||+.....  ....+..+...|.+++|+|+++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~  231 (369)
T 3zwl_B          158 LTKVSEEPIHKIITHEGLDAATVAGWSTKG----KYIIAGHKDGKISKYDVSNNYE--YVDSIDLHEKSISDMQFSPDLT  231 (369)
T ss_dssp             EEEECSSCSEEEECCTTCCCEEEEEECGGG----CEEEEEETTSEEEEEETTTTTE--EEEEEECCSSCEEEEEECTTSS
T ss_pred             ecccccceeeeccCCcCccceeEEEEcCCC----CEEEEEcCCCEEEEEECCCCcE--eEEEEecCCCceeEEEECCCCC
Confidence                  12223445655  89999999974    6899999999999999875321  2344556778999999999999


Q ss_pred             EEEEEeCCCcEEEeEc
Q 036510          272 ILAVADGNNNVTLWEE  287 (288)
Q Consensus       272 ~l~s~~~d~~v~~w~~  287 (288)
                      +|++++.|+.|++||+
T Consensus       232 ~l~~~~~d~~i~v~d~  247 (369)
T 3zwl_B          232 YFITSSRDTNSFLVDV  247 (369)
T ss_dssp             EEEEEETTSEEEEEET
T ss_pred             EEEEecCCceEEEEEC
Confidence            9999999999999995

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=3.4e-29  Score=213.18  Aligned_cols=202  Identities=12%  Similarity=0.137  Sum_probs=142.9

Q ss_pred             ccceEEEEEcCC----CCEEEEee--------------------CCCcEEEEEeCCCCceeeEEEeccccCeEEEEecC-
Q 036510           11 EDTVHDVAMDYY----GKRLATAS--------------------SDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH-   65 (288)
Q Consensus        11 ~~~v~~~~~s~~----g~~l~s~~--------------------~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~-   65 (288)
                      ...|..++|+|+    ++++++++                    .|+.|++|++. +.++.+..+.+|...+..++|++ 
T Consensus       111 ~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s-~dG~~~~s~~~~~~~v~~l~fs~~  189 (356)
T 2w18_A          111 IREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFA-EDGGGKENQFLMPPEETILTFAEV  189 (356)
T ss_dssp             EEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEEC-TTSCEEEEEEECCCSSCEEEEEEE
T ss_pred             ccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEEC-CCCceeeeeccCCCceeeEEeecc
Confidence            346666667777    66666655                    38999999984 34567788889999999999987 


Q ss_pred             CCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCC---CceeEEEeccCCCCeEE------------EEEeCCCcEEE
Q 036510           66 PKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHK---SSVNSIDWAPHELGLCL------------ACGSSDGNISV  130 (288)
Q Consensus        66 ~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~---~~v~~l~~~p~~~~~~l------------~sg~~d~~i~i  130 (288)
                      +.++++|+|+|.|++|+|||+.++.   ..+++.+|.   ..+.+++|+|+  +.++            ++|+.|++|++
T Consensus       190 ~g~~~~LaSgS~D~TIkIWDl~TGk---~l~tL~g~~~~v~~v~~vafSpd--G~~lvs~s~~~~~w~laSGs~D~tIkl  264 (356)
T 2w18_A          190 QGMQEALLGTTIMNNIVIWNLKTGQ---LLKKMHIDDSYQASVCHKAYSEM--GLLFIVLSHPCAKESESLRSPVFQLIV  264 (356)
T ss_dssp             ETSTTEEEEEETTSEEEEEETTTCC---EEEEEECCC---CCCEEEEEEET--TEEEEEEC------------CCEEEEE
T ss_pred             CCCCceEEEecCCCcEEEEECCCCc---EEEEEcCCCcceeeeEEEEECCC--CCEEEEeccCCCcceeeccCCCcEEEE
Confidence            4568999999999999999998876   445666543   36777899997  4443            67899999999


Q ss_pred             EeecCCCCeeeEE--eeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccC
Q 036510          131 FTARADGGWDTSR--IDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMH  208 (288)
Q Consensus       131 ~d~~~~~~~~~~~--~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h  208 (288)
                      ||..++.......  ...+|...+.+..++                +.++++++.|++|||||+.++    +++.++.+|
T Consensus       265 Wd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s----------------g~~lASgS~DgTIkIWDl~tG----k~l~tL~gH  324 (356)
T 2w18_A          265 INPKTTLSVGVMLYCLPPGQAGRFLEGDVK----------------DHCAAAILTSGTIAIWDLLLG----QCTALLPPV  324 (356)
T ss_dssp             EETTTTEEEEEEEECCCTTCCCCEEEEEEE----------------TTEEEEEETTSCEEEEETTTC----SEEEEECCC
T ss_pred             EECCCCEEEEEEEeeccCCCcceeEccccC----------------CCEEEEEcCCCcEEEEECCCC----cEEEEecCC
Confidence            9987653221110  012443333222222                257899999999999999887    567788889


Q ss_pred             CcceE-EEEecCCCCCCCcEEEEEeCCCcEEEEEe
Q 036510          209 TDWVR-DVAWAPNLGLPKSTIASASEDGKVIIWTV  242 (288)
Q Consensus       209 ~~~V~-~v~~sp~~~~~~~~l~s~s~D~~i~iw~~  242 (288)
                      .+.+. +++|+|++    ++|+||+.|++|||||+
T Consensus       325 ~~~vvs~vafSPDG----~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          325 SDQHWSFVKWSGTD----SHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             --CCCCEEEECSSS----SEEEEECTTSCEEEEEE
T ss_pred             CCCeEEEEEECCCC----CEEEEEECCCcEEEecC
Confidence            87655 68999984    78999999999999985

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=1.4e-26  Score=205.77  Aligned_cols=242  Identities=9%  Similarity=0.071  Sum_probs=183.7

Q ss_pred             ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEE-EEeeCCCcEEEee
Q 036510            7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSIL-ASCSFDGTVIIWK   85 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~d~~v~iwd   85 (288)
                      +.+|...|.+++|+++|+++++++.|++|++||+..  .+.+..+..|...+.+++|+++  +..+ ++++.|+.|++||
T Consensus       165 ~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~i~~~d  240 (433)
T 3bws_A          165 YKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT--LAYKATVDLTGKWSKILLYDPI--RDLVYCSNWISEDISVID  240 (433)
T ss_dssp             HHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT--CCEEEEEECSSSSEEEEEEETT--TTEEEEEETTTTEEEEEE
T ss_pred             ccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC--ceEEEEEcCCCCCeeEEEEcCC--CCEEEEEecCCCcEEEEE
Confidence            347889999999999999999999999999999854  3567788889999999999865  5655 5666899999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEe--------CCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEe
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGS--------SDGNISVFTARADGGWDTSRIDQAHPVGVTSVSW  157 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~--------~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~  157 (288)
                      ++++.   ....+.. ...+.+++|+|+  +..+++++        .|+.|++||++.+....    ...|...+..+.|
T Consensus       241 ~~~~~---~~~~~~~-~~~~~~~~~~~~--g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~----~~~~~~~~~~~~~  310 (433)
T 3bws_A          241 RKTKL---EIRKTDK-IGLPRGLLLSKD--GKELYIAQFSASNQESGGGRLGIYSMDKEKLID----TIGPPGNKRHIVS  310 (433)
T ss_dssp             TTTTE---EEEECCC-CSEEEEEEECTT--SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEE----EEEEEECEEEEEE
T ss_pred             CCCCc---EEEEecC-CCCceEEEEcCC--CCEEEEEECCCCccccCCCeEEEEECCCCcEEe----eccCCCCcceEEE
Confidence            97654   3334443 356899999998  45566665        48899999998653211    1234457889999


Q ss_pred             CCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeC----
Q 036510          158 APSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE----  233 (288)
Q Consensus       158 ~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~----  233 (288)
                      +|++.             .++++++.|+.|++||+.++.    ....+. +...+.+++|+|++    ++|++++.    
T Consensus       311 ~~~g~-------------~l~~~~~~~~~v~v~d~~~~~----~~~~~~-~~~~~~~~~~s~dg----~~l~~~~~~~~~  368 (433)
T 3bws_A          311 GNTEN-------------KIYVSDMCCSKIEVYDLKEKK----VQKSIP-VFDKPNTIALSPDG----KYLYVSCRGPNH  368 (433)
T ss_dssp             CSSTT-------------EEEEEETTTTEEEEEETTTTE----EEEEEE-CSSSEEEEEECTTS----SEEEEEECCCCC
T ss_pred             CCCCC-------------EEEEEecCCCEEEEEECCCCc----EEEEec-CCCCCCeEEEcCCC----CEEEEEecCCCc
Confidence            99872             456788999999999998752    233333 56678999999984    56777665    


Q ss_pred             -----------CCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeC-CCcEEEeEcC
Q 036510          234 -----------DGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADG-NNNVTLWEEA  288 (288)
Q Consensus       234 -----------D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~-d~~v~~w~~~  288 (288)
                                 |+.|++||+....   ....+. ....+.+++|+|||++|++++. |++|++|++.
T Consensus       369 ~~~~~~~~g~~dg~v~~~d~~~~~---~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          369 PTEGYLKKGLVLGKVYVIDTTTDT---VKEFWE-AGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             TTTCTTSCCSSCCEEEEEETTTTE---EEEEEE-CSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             cccccccccccceEEEEEECCCCc---EEEEec-CCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence                       5799999986431   112222 2457899999999999998875 9999999963

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=6.9e-28  Score=212.59  Aligned_cols=221  Identities=13%  Similarity=0.091  Sum_probs=151.2

Q ss_pred             ccccccccceEEEEEcC--------CCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEee
Q 036510            5 KIETGHEDTVHDVAMDY--------YGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCS   76 (288)
Q Consensus         5 ~~~~~h~~~v~~~~~s~--------~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s   76 (288)
                      ..+.||++.|++++|+|        ||++|||||.|++|+|||+...  ..+..+.+|...|.+++|+|+ ++.+|++++
T Consensus       130 ~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~--~~~~~~~~~~~~v~~v~~~p~-~~~~l~~~~  206 (393)
T 4gq1_A          130 GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE--GPILAGYPLSSPGISVQFRPS-NPNQLIVGE  206 (393)
T ss_dssp             CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT--EEEEEEEECSSCEEEEEEETT-EEEEEEEEE
T ss_pred             cccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC--ceeeeecCCCCCcEEEEECCC-CCceEEecC
Confidence            34679999999999997        7899999999999999998543  556777889999999999864 346899999


Q ss_pred             CCCcEEEeecCCCCceEE----------------------eEEeecCCCceeEEEec-cCCCCeEEEEEeCCCcEEEEee
Q 036510           77 FDGTVIIWKEGNSNEWIK----------------------DHVFEDHKSSVNSIDWA-PHELGLCLACGSSDGNISVFTA  133 (288)
Q Consensus        77 ~d~~v~iwd~~~~~~~~~----------------------~~~~~~h~~~v~~l~~~-p~~~~~~l~sg~~d~~i~i~d~  133 (288)
                      .|++|++||++.+.....                      .....+|...+.++.|+ |+  +..+++++.|+++++||+
T Consensus       207 ~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~d--g~~l~s~s~d~~i~vwd~  284 (393)
T 4gq1_A          207 RNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSD--GSGILAMCKSGAWLRWNL  284 (393)
T ss_dssp             TTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTT--TCEEEEECTTSEEEEEEC
T ss_pred             CCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCC--CCEEEEEeCCCCEEEEEC
Confidence            999999999876432100                      01123688889999997 44  678999999999999999


Q ss_pred             cCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc----eeccccc--CCCceeEEeecCCcEEEEEEeCCceeeeeeecccc
Q 036510          134 RADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA----LVGSGFL--DPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQM  207 (288)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~----~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  207 (288)
                      +.....   .....|...+..+.+.|+.....    .....+.  .+..++++|+.|++|+|||+.++.    +...+.+
T Consensus       285 ~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~----~~~~~~~  357 (393)
T 4gq1_A          285 FANNDY---NEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD----SNSIPIQ  357 (393)
T ss_dssp             ----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT----CCEEEEE
T ss_pred             ccCCCC---ceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc----EEEEecC
Confidence            764321   22234555566666666532110    0111111  123467788999999999998763    3344567


Q ss_pred             CCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEe
Q 036510          208 HTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV  242 (288)
Q Consensus       208 h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~  242 (288)
                      |..+|++|+|+|++    ++||+++.|+ +.+|.+
T Consensus       358 ~~~~V~svafspdG----~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          358 LGMPIVDFCWHQDG----SHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             CSSCEEEEEECTTS----SEEEEEESSE-EEEEEE
T ss_pred             CCCcEEEEEEcCCC----CEEEEEeCCC-eEEEEE
Confidence            88899999999984    7899998766 666655

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=3.1e-25  Score=194.42  Aligned_cols=238  Identities=9%  Similarity=0.050  Sum_probs=175.1

Q ss_pred             ccccceEEEEEcCCCCEE-EEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEE-EEeeCCCcEEEeec
Q 036510            9 GHEDTVHDVAMDYYGKRL-ATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSIL-ASCSFDGTVIIWKE   86 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l-~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~d~~v~iwd~   86 (288)
                      +| ..+.+++|+|+|++| ++++.|++|++||...  ++.+..+..|. .+.+++|+++  +++| ++++.|+.|++||+
T Consensus        30 ~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~--~~~~~~~~~~~-~v~~~~~spd--g~~l~~~~~~~~~v~v~d~  103 (391)
T 1l0q_A           30 VG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTAT--NNVIATVPAGS-SPQGVAVSPD--GKQVYVTNMASSTLSVIDT  103 (391)
T ss_dssp             CS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTT--TEEEEEEECSS-SEEEEEECTT--SSEEEEEETTTTEEEEEET
T ss_pred             cC-CCcceEEECCCCCEEEEECCCCCeEEEEECCC--CeEEEEEECCC-CccceEECCC--CCEEEEEECCCCEEEEEEC
Confidence            44 457899999999876 6777999999999853  46666776655 8999999865  6655 56667899999999


Q ss_pred             CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCce
Q 036510           87 GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGAL  166 (288)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~  166 (288)
                      .++.   ....+.. ...+.+++|+|++ ..++++++.++.|++||++.+..   ......+ ..+..+.|+|++.    
T Consensus       104 ~~~~---~~~~~~~-~~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~---~~~~~~~-~~~~~~~~~~dg~----  170 (391)
T 1l0q_A          104 TSNT---VAGTVKT-GKSPLGLALSPDG-KKLYVTNNGDKTVSVINTVTKAV---INTVSVG-RSPKGIAVTPDGT----  170 (391)
T ss_dssp             TTTE---EEEEEEC-SSSEEEEEECTTS-SEEEEEETTTTEEEEEETTTTEE---EEEEECC-SSEEEEEECTTSS----
T ss_pred             CCCe---EEEEEeC-CCCcceEEECCCC-CEEEEEeCCCCEEEEEECCCCcE---EEEEecC-CCcceEEECCCCC----
Confidence            7654   2334443 4578999999984 34457888899999999976532   2222233 4578999999872    


Q ss_pred             ecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEe---CCCcEEEEEee
Q 036510          167 VGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASAS---EDGKVIIWTVA  243 (288)
Q Consensus       167 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s---~D~~i~iw~~~  243 (288)
                               .++++++.|+.|++||++++.    +...+. +...+.++.|+|++    .+|++++   .|+.|++||+.
T Consensus       171 ---------~l~~~~~~~~~v~~~d~~~~~----~~~~~~-~~~~~~~~~~~~~g----~~l~~~~~~~~~~~v~~~d~~  232 (391)
T 1l0q_A          171 ---------KVYVANFDSMSISVIDTVTNS----VIDTVK-VEAAPSGIAVNPEG----TKAYVTNVDKYFNTVSMIDTG  232 (391)
T ss_dssp             ---------EEEEEETTTTEEEEEETTTTE----EEEEEE-CSSEEEEEEECTTS----SEEEEEEECSSCCEEEEEETT
T ss_pred             ---------EEEEEeCCCCEEEEEECCCCe----EEEEEe-cCCCccceEECCCC----CEEEEEecCcCCCcEEEEECC
Confidence                     334788889999999998763    222322 45678999999984    5677776   68999999986


Q ss_pred             cCCCcccceEeeccccCeEEEEeecCCCEE-EEEeCCCcEEEeEc
Q 036510          244 REGDQWEGKVLHDFKTPVYRVSWSLTGNIL-AVADGNNNVTLWEE  287 (288)
Q Consensus       244 ~~~~~~~~~~~~~~~~~i~~~~~spdg~~l-~s~~~d~~v~~w~~  287 (288)
                      ..+   ....+.. ...+.+++|+|||++| ++++.|+.|++||.
T Consensus       233 ~~~---~~~~~~~-~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~  273 (391)
T 1l0q_A          233 TNK---ITARIPV-GPDPAGIAVTPDGKKVYVALSFXNTVSVIDT  273 (391)
T ss_dssp             TTE---EEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             CCe---EEEEEec-CCCccEEEEccCCCEEEEEcCCCCEEEEEEC
Confidence            431   1122222 3457899999999987 56678999999995

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=1.3e-26  Score=201.66  Aligned_cols=221  Identities=11%  Similarity=0.063  Sum_probs=150.8

Q ss_pred             eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC
Q 036510           46 QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD  125 (288)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d  125 (288)
                      +.+.++.+|...|++++|+++  +.+|++|+.|+ ++||+.....   .....  +...+..+++.++. ..++++|+.|
T Consensus        10 ~~~~~~~~h~~~V~~v~fs~d--g~~la~g~~~~-~~iw~~~~~~---~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~d   80 (355)
T 3vu4_A           10 NPIVPENHVSNPVTDYEFNQD--QSCLILSTLKS-FEIYNVHPVA---HIMSQ--EMRHLSKVRMLHRT-NYVAFVTGVK   80 (355)
T ss_dssp             ---------CCCCCEEEECTT--SSEEEEECSSE-EEEEEETTEE---EEEEE--ECSCCCEEEECTTS-SEEEEECSST
T ss_pred             CCccccccCCCceEEEEECCC--CCEEEEEcCCE-EEEEecCCcc---eeeee--ecCCeEEEEEcCCC-CEEEEEECCc
Confidence            456677899999999999875  88999988775 7899986533   11222  22357888888764 4455778889


Q ss_pred             CcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCC----Cceecccc------------------cCCCceeEE--e
Q 036510          126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAP----GALVGSGF------------------LDPVQKLCS--G  181 (288)
Q Consensus       126 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~----~~~~~~~~------------------~~~~~~l~s--~  181 (288)
                      ++|++||.+++....   .. .|...|.++.|+++...    +.+..-++                  +.. .+++.  |
T Consensus        81 ~~v~iWd~~~~~~~~---~~-~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~-~~la~~sg  155 (355)
T 3vu4_A           81 EVVHIWDDVKKQDVS---RI-KVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSN-GLLVYSNE  155 (355)
T ss_dssp             TEEEEEETTTTEEEE---EE-ECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEET-TEEEEEES
T ss_pred             cEEEEEECCCCcEEE---EE-ECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEc-cEEEEeCC
Confidence            999999998754322   22 25668999999876410    00000000                  001 23443  6


Q ss_pred             ecCCcEEEEEEeCCce-----------eee-eeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCc-EEEEEeecCCCc
Q 036510          182 GCDNTVKVWKLYNGIW-----------KMD-CFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGK-VIIWTVAREGDQ  248 (288)
Q Consensus       182 ~~d~~i~iwd~~~~~~-----------~~~-~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~-i~iw~~~~~~~~  248 (288)
                      +.|+.|++||+.++..           .+. ++..+.+|...|.+++|+|++    ++||+|+.|++ |++||++...  
T Consensus       156 ~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g----~~l~s~s~d~~~v~iwd~~~~~--  229 (355)
T 3vu4_A          156 FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS----DMVATCSQDGTIIRVFKTEDGV--  229 (355)
T ss_dssp             SCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS----SEEEEEETTCSEEEEEETTTCC--
T ss_pred             CcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC----CEEEEEeCCCCEEEEEECCCCc--
Confidence            8899999999976420           000 155678999999999999984    78999999999 9999987542  


Q ss_pred             ccceEee-c-cccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          249 WEGKVLH-D-FKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       249 ~~~~~~~-~-~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                       ....+. + |..+|.+++|+|||++|++++.|++|+|||+
T Consensus       230 -~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~  269 (355)
T 3vu4_A          230 -LVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEI  269 (355)
T ss_dssp             -EEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEES
T ss_pred             -EEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEc
Confidence             123333 4 7789999999999999999999999999996

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=3e-26  Score=203.58  Aligned_cols=238  Identities=10%  Similarity=0.032  Sum_probs=179.8

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeE-----EEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510           12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLA-----KLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE   86 (288)
Q Consensus        12 ~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~   86 (288)
                      ..+.+++|+|+++++++++.|++|++||...+  +.+.     .+.+|...|++++|++  ++.++++++.|+.|++||+
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~v~~~d~  198 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSG--QTVRLSPPEKYKKKLGFVETISIPE--HNELWVSQMQANAVHVFDL  198 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTC--CEEEECCCHHHHTTCCEEEEEEEGG--GTEEEEEEGGGTEEEEEET
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCC--eEeeecCcccccccCCceeEEEEcC--CCEEEEEECCCCEEEEEEC
Confidence            34568899998888888889999999998643  3333     3458899999999965  3889999999999999999


Q ss_pred             CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCce
Q 036510           87 GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGAL  166 (288)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~  166 (288)
                      .++.   ....+..|...+.+++|+|++ ..++++++.|+.|++||++.+..   ..... +...+.++.|+|++     
T Consensus       199 ~~~~---~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~i~~~d~~~~~~---~~~~~-~~~~~~~~~~~~~g-----  265 (433)
T 3bws_A          199 KTLA---YKATVDLTGKWSKILLYDPIR-DLVYCSNWISEDISVIDRKTKLE---IRKTD-KIGLPRGLLLSKDG-----  265 (433)
T ss_dssp             TTCC---EEEEEECSSSSEEEEEEETTT-TEEEEEETTTTEEEEEETTTTEE---EEECC-CCSEEEEEEECTTS-----
T ss_pred             CCce---EEEEEcCCCCCeeEEEEcCCC-CEEEEEecCCCcEEEEECCCCcE---EEEec-CCCCceEEEEcCCC-----
Confidence            7654   345566788899999999984 34456677899999999976432   22222 23458899999987     


Q ss_pred             ecccccCCCceeEEee--------cCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEE
Q 036510          167 VGSGFLDPVQKLCSGG--------CDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVI  238 (288)
Q Consensus       167 ~~~~~~~~~~~l~s~~--------~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~  238 (288)
                               +.+++++        .|+.|++||+.++.    .... ..|...+.++.|+|++   ..++++++.|+.|+
T Consensus       266 ---------~~l~~~~~~~~~~~~~dg~i~~~d~~~~~----~~~~-~~~~~~~~~~~~~~~g---~~l~~~~~~~~~v~  328 (433)
T 3bws_A          266 ---------KELYIAQFSASNQESGGGRLGIYSMDKEK----LIDT-IGPPGNKRHIVSGNTE---NKIYVSDMCCSKIE  328 (433)
T ss_dssp             ---------SEEEEEEEESCTTCSCCEEEEEEETTTTE----EEEE-EEEEECEEEEEECSST---TEEEEEETTTTEEE
T ss_pred             ---------CEEEEEECCCCccccCCCeEEEEECCCCc----EEee-ccCCCCcceEEECCCC---CEEEEEecCCCEEE
Confidence                     5666666        58899999998763    2222 2455578999999984   24667889999999


Q ss_pred             EEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeC---------------CCcEEEeEc
Q 036510          239 IWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADG---------------NNNVTLWEE  287 (288)
Q Consensus       239 iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~---------------d~~v~~w~~  287 (288)
                      +||+....   .... ..+...+.+++|+|+|+++++++.               ||.|++||.
T Consensus       329 v~d~~~~~---~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~  388 (433)
T 3bws_A          329 VYDLKEKK---VQKS-IPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDT  388 (433)
T ss_dssp             EEETTTTE---EEEE-EECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEET
T ss_pred             EEECCCCc---EEEE-ecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEEC
Confidence            99987431   1122 234567999999999999998887               569999995

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=8.6e-25  Score=191.59  Aligned_cols=224  Identities=11%  Similarity=0.085  Sum_probs=167.2

Q ss_pred             CEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEE-EEeeCCCcEEEeecCCCCceEEeEEeecCC
Q 036510           24 KRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSIL-ASCSFDGTVIIWKEGNSNEWIKDHVFEDHK  102 (288)
Q Consensus        24 ~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~  102 (288)
                      .++++++.|++|++||+..  ++.+..+..|. .+.+++|+++  ++++ ++++.|++|++||+.++.   ....+..+.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~--~~~~~~~~~~~-~~~~~~~s~d--g~~l~~~~~~d~~i~v~d~~~~~---~~~~~~~~~   74 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTS--NKVTATIPVGS-NPMGAVISPD--GTKVYVANAHSNDVSIIDTATNN---VIATVPAGS   74 (391)
T ss_dssp             EEEEEETTTTEEEEEETTT--TEEEEEEECSS-SEEEEEECTT--SSEEEEEEGGGTEEEEEETTTTE---EEEEEECSS
T ss_pred             EEEEEcCCCCEEEEEECCC--CeEEEEeecCC-CcceEEECCC--CCEEEEECCCCCeEEEEECCCCe---EEEEEECCC
Confidence            4688899999999999854  46677777765 4899999865  6655 788899999999997654   334454443


Q ss_pred             CceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEee
Q 036510          103 SSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGG  182 (288)
Q Consensus       103 ~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~  182 (288)
                       .+.+++|+|++ ..++++++.++.|++||+..+...   .... +...+.++.|+|++.             .++++++
T Consensus        75 -~v~~~~~spdg-~~l~~~~~~~~~v~v~d~~~~~~~---~~~~-~~~~~~~~~~s~dg~-------------~l~~~~~  135 (391)
T 1l0q_A           75 -SPQGVAVSPDG-KQVYVTNMASSTLSVIDTTSNTVA---GTVK-TGKSPLGLALSPDGK-------------KLYVTNN  135 (391)
T ss_dssp             -SEEEEEECTTS-SEEEEEETTTTEEEEEETTTTEEE---EEEE-CSSSEEEEEECTTSS-------------EEEEEET
T ss_pred             -CccceEECCCC-CEEEEEECCCCEEEEEECCCCeEE---EEEe-CCCCcceEEECCCCC-------------EEEEEeC
Confidence             89999999984 344566777899999999865322   2222 344689999999872             2347888


Q ss_pred             cCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEE-EEEeCCCcEEEEEeecCCCcccceEeeccccCe
Q 036510          183 CDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTI-ASASEDGKVIIWTVAREGDQWEGKVLHDFKTPV  261 (288)
Q Consensus       183 ~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l-~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i  261 (288)
                      .|+.|++||+.++.    .+..+..|. .+.++.|+|++    .+| ++++.|+.|++||++...    ......+...+
T Consensus       136 ~~~~v~~~d~~~~~----~~~~~~~~~-~~~~~~~~~dg----~~l~~~~~~~~~v~~~d~~~~~----~~~~~~~~~~~  202 (391)
T 1l0q_A          136 GDKTVSVINTVTKA----VINTVSVGR-SPKGIAVTPDG----TKVYVANFDSMSISVIDTVTNS----VIDTVKVEAAP  202 (391)
T ss_dssp             TTTEEEEEETTTTE----EEEEEECCS-SEEEEEECTTS----SEEEEEETTTTEEEEEETTTTE----EEEEEECSSEE
T ss_pred             CCCEEEEEECCCCc----EEEEEecCC-CcceEEECCCC----CEEEEEeCCCCEEEEEECCCCe----EEEEEecCCCc
Confidence            89999999998763    333444443 46999999985    445 788899999999986531    11122345678


Q ss_pred             EEEEeecCCCEEEEEe---CCCcEEEeEc
Q 036510          262 YRVSWSLTGNILAVAD---GNNNVTLWEE  287 (288)
Q Consensus       262 ~~~~~spdg~~l~s~~---~d~~v~~w~~  287 (288)
                      .+++|+|+|++|++++   .++.|++||.
T Consensus       203 ~~~~~~~~g~~l~~~~~~~~~~~v~~~d~  231 (391)
T 1l0q_A          203 SGIAVNPEGTKAYVTNVDKYFNTVSMIDT  231 (391)
T ss_dssp             EEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred             cceEECCCCCEEEEEecCcCCCcEEEEEC
Confidence            9999999999999998   6899999995

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.93  E-value=1e-22  Score=175.89  Aligned_cols=256  Identities=11%  Similarity=0.110  Sum_probs=171.8

Q ss_pred             cccceEEEEEcCCCCEEEEeeC---CCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEee-CCCcEEEee
Q 036510           10 HEDTVHDVAMDYYGKRLATASS---DYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCS-FDGTVIIWK   85 (288)
Q Consensus        10 h~~~v~~~~~s~~g~~l~s~~~---d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~d~~v~iwd   85 (288)
                      +...+..++|+|+|+ |++++.   ++.|++|+++.+..+.+..+..|...+..++|+++  +++|++++ .++++++|+
T Consensus        38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spd--g~~l~~~~~~~~~v~v~~  114 (347)
T 3hfq_A           38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEA--RQLVYSANYHKGTAEVMK  114 (347)
T ss_dssp             ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETT--TTEEEEEETTTTEEEEEE
T ss_pred             ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCC--CCEEEEEeCCCCEEEEEE
Confidence            445567789999999 555554   68999999965544456666667788899999875  78777777 789999999


Q ss_pred             cCCCCceEEeEEeec---------CCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeecc-CCCCeeEE
Q 036510           86 EGNSNEWIKDHVFED---------HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQA-HPVGVTSV  155 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~---------h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~v~~i  155 (288)
                      +...........+..         +...+.+++|+|++  .++++...++.|++|++...+.......... .......+
T Consensus       115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg--~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~  192 (347)
T 3hfq_A          115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN--RLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHL  192 (347)
T ss_dssp             ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS--CEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEE
T ss_pred             eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC--cEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceE
Confidence            854333222222321         11247889999985  4677777788999999984443332222122 22357789


Q ss_pred             EeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCC------cceEEEEecCCCCCCCcEE-
Q 036510          156 SWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHT------DWVRDVAWAPNLGLPKSTI-  228 (288)
Q Consensus       156 ~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~------~~V~~v~~sp~~~~~~~~l-  228 (288)
                      .|+|++.             .+++++..++.|.+|++......++....+....      ..+..++|+|++    ++| 
T Consensus       193 ~~spdg~-------------~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG----~~l~  255 (347)
T 3hfq_A          193 VFSPDGQ-------------YAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDG----HFLY  255 (347)
T ss_dssp             EECTTSS-------------EEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTS----CEEE
T ss_pred             EECCCCC-------------EEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCC----CEEE
Confidence            9999872             2455667788999999985211222222222211      458899999985    445 


Q ss_pred             EEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCC-CcEEEeEc
Q 036510          229 ASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGN-NNVTLWEE  287 (288)
Q Consensus       229 ~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d-~~v~~w~~  287 (288)
                      ++...++.|.+|++...+.......+..+...+..++|+|||++|++++.+ +.|.+|++
T Consensus       256 v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~  315 (347)
T 3hfq_A          256 VSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR  315 (347)
T ss_dssp             EEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence            667779999999987432111112222334567899999999999888765 89999953

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=6.3e-23  Score=175.88  Aligned_cols=255  Identities=15%  Similarity=0.224  Sum_probs=169.1

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCC-CcEEEEEeC--CCCceeeEEEeccccCeEEEEecCCCCCCEEEEee-CCCcEEEe
Q 036510            9 GHEDTVHDVAMDYYGKRLATASSD-YSIKIIGVG--NNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCS-FDGTVIIW   84 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l~s~~~d-~~i~lwd~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~d~~v~iw   84 (288)
                      .|...+.+++|+|+|++|++++.+ +.|++|+++  .+..+.+..+..+. .+..++|+++  +++|+.++ .++.|++|
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~d--g~~l~~~~~~~~~i~~~  111 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQ--GQFVFVGSYNAGNVSVT  111 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTT--SSEEEEEETTTTEEEEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCC--CCEEEEEecCCCeEEEE
Confidence            466778889999999999988887 999999996  33334455555544 7789999865  77665554 58999999


Q ss_pred             ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEe-CCCcEEEEeecCCCCeeeEE--eec-cCCCCeeEEEeCCC
Q 036510           85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGS-SDGNISVFTARADGGWDTSR--IDQ-AHPVGVTSVSWAPS  160 (288)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~-~d~~i~i~d~~~~~~~~~~~--~~~-~~~~~v~~i~~~p~  160 (288)
                      |+.++........+.. ...+.+++|+|+  +..+++++ .++.|.+||+...+......  ... .....+..+.|+|+
T Consensus       112 d~~~~~~~~~~~~~~~-~~~~~~~~~s~d--g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd  188 (343)
T 1ri6_A          112 RLEDGLPVGVVDVVEG-LDGCHSANISPD--NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN  188 (343)
T ss_dssp             EEETTEEEEEEEEECC-CTTBCCCEECTT--SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTT
T ss_pred             ECCCCccccccccccC-CCCceEEEECCC--CCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCC
Confidence            9853322223333433 346899999998  44445554 88999999998634332221  112 23346788999998


Q ss_pred             CCCCceecccccCCCceeEEeecCCcEEEEEEeC--Ccee-eeeeeccc-cC--CcceEEEEecCCCCCCCcEEEEEeCC
Q 036510          161 TAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYN--GIWK-MDCFPALQ-MH--TDWVRDVAWAPNLGLPKSTIASASED  234 (288)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~-~~~~~~~~-~h--~~~V~~v~~sp~~~~~~~~l~s~s~D  234 (288)
                      +.             .+++++..++.|.+||+..  +... ......+. ++  ...+.+++|+|++   ..++++...|
T Consensus       189 g~-------------~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg---~~l~v~~~~~  252 (343)
T 1ri6_A          189 EQ-------------YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG---RHLYACDRTA  252 (343)
T ss_dssp             SS-------------EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS---SEEEEEETTT
T ss_pred             CC-------------EEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC---CEEEEEecCC
Confidence            72             2445666889999999853  3211 11122121 11  2357789999985   2344466689


Q ss_pred             CcEEEEEeecCCCc-ccceEeeccccCeEEEEeecCCCEEEEEe-CCCcEEEeE
Q 036510          235 GKVIIWTVAREGDQ-WEGKVLHDFKTPVYRVSWSLTGNILAVAD-GNNNVTLWE  286 (288)
Q Consensus       235 ~~i~iw~~~~~~~~-~~~~~~~~~~~~i~~~~~spdg~~l~s~~-~d~~v~~w~  286 (288)
                      +.|++|++...... .....+.. ...+..++|+|||++|++++ .++.|++|+
T Consensus       253 ~~i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~  305 (343)
T 1ri6_A          253 SLITVFSVSEDGSVLSKEGFQPT-ETQPRGFNVDHSGKYLIAAGQKSHHISVYE  305 (343)
T ss_dssp             TEEEEEEECTTSCCEEEEEEEEC-SSSCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred             CEEEEEEEcCCCCceEEeeeecC-CCccceEEECCCCCEEEEecCCCCeEEEEE
Confidence            99999999742111 11111222 23478899999999988887 589999995

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=6.1e-24  Score=188.73  Aligned_cols=222  Identities=16%  Similarity=0.180  Sum_probs=165.2

Q ss_pred             CCEEEEeeCC------CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCC---cEEEeecCCCCceE
Q 036510           23 GKRLATASSD------YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDG---TVIIWKEGNSNEWI   93 (288)
Q Consensus        23 g~~l~s~~~d------~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~---~v~iwd~~~~~~~~   93 (288)
                      +..++.++.+      ++|++||+++   .....+.+|...+.+++|+|+  |+.|++++.|+   .|++||+.++..  
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g---~~~~~l~~~~~~v~~~~~Spd--g~~la~~s~~~~~~~i~~~d~~tg~~--  215 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDG---YNQFVVHRSPQPLMSPAWSPD--GSKLAYVTFESGRSALVIQTLANGAV--  215 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTS---CSCEEEEEESSCEEEEEECTT--SSEEEEEECTTSSCEEEEEETTTCCE--
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCC---CCCEEEeCCCCcceeeEEcCC--CCEEEEEEecCCCcEEEEEECCCCcE--
Confidence            6667766654      7999999864   345677889999999999975  89999999885   999999987642  


Q ss_pred             EeEEeecCCCceeEEEeccCCCCeEEE-EEeCCCc--EEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceeccc
Q 036510           94 KDHVFEDHKSSVNSIDWAPHELGLCLA-CGSSDGN--ISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG  170 (288)
Q Consensus        94 ~~~~~~~h~~~v~~l~~~p~~~~~~l~-sg~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~  170 (288)
                        ..+..|...+.+++|+|+  +..++ +++.++.  |++||++.+.    ......|...+.++.|+|++         
T Consensus       216 --~~l~~~~~~~~~~~~spd--g~~la~~~~~~g~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~spdg---------  278 (415)
T 2hqs_A          216 --RQVASFPRHNGAPAFSPD--GSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDS---------  278 (415)
T ss_dssp             --EEEECCSSCEEEEEECTT--SSEEEEEECTTSSCEEEEEETTTCC----EEECCCCSSCEEEEEECTTS---------
T ss_pred             --EEeecCCCcccCEEEcCC--CCEEEEEEecCCCceEEEEECCCCC----EEeCcCCCCcccceEECCCC---------
Confidence              245668889999999998  44444 6766665  8889987643    13345677789999999997         


Q ss_pred             ccCCCceeEEeec-CC--cEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCC---CcEEEEEeec
Q 036510          171 FLDPVQKLCSGGC-DN--TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASED---GKVIIWTVAR  244 (288)
Q Consensus       171 ~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D---~~i~iw~~~~  244 (288)
                           +.|+.++. ++  .|.+||+.++.     ...+..|...+.++.|+|++    ++|++++.+   ..|++||+..
T Consensus       279 -----~~l~~~s~~~g~~~i~~~d~~~~~-----~~~l~~~~~~~~~~~~spdG----~~l~~~~~~~g~~~i~~~d~~~  344 (415)
T 2hqs_A          279 -----QNLAFTSDQAGRPQVYKVNINGGA-----PQRITWEGSQNQDADVSSDG----KFMVMVSSNGGQQHIAKQDLAT  344 (415)
T ss_dssp             -----SEEEEEECTTSSCEEEEEETTSSC-----CEECCCSSSEEEEEEECTTS----SEEEEEEECSSCEEEEEEETTT
T ss_pred             -----CEEEEEECCCCCcEEEEEECCCCC-----EEEEecCCCcccCeEECCCC----CEEEEEECcCCceEEEEEECCC
Confidence                 56666665 45  46666766542     22344566789999999984    678888764   5899999865


Q ss_pred             CCCcccceEeeccccCeEEEEeecCCCEEEEEeCCC---cEEEeEc
Q 036510          245 EGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNN---NVTLWEE  287 (288)
Q Consensus       245 ~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~---~v~~w~~  287 (288)
                      ..    ...+..+. .+.+++|+|||++|++++.++   .|++||+
T Consensus       345 ~~----~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~  385 (415)
T 2hqs_A          345 GG----VQVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVST  385 (415)
T ss_dssp             CC----EEECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred             CC----EEEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEEC
Confidence            32    12333333 789999999999999998877   7999985

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.92  E-value=1.6e-22  Score=185.41  Aligned_cols=245  Identities=12%  Similarity=0.086  Sum_probs=177.2

Q ss_pred             eEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecC----CCCCCEEEEee-CCCcEEEeecCC
Q 036510           14 VHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH----PKFGSILASCS-FDGTVIIWKEGN   88 (288)
Q Consensus        14 v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~~~l~s~s-~d~~v~iwd~~~   88 (288)
                      +..+.|+|+|++|++++.|++|++||+...+.+.+.++.. ...+..++|++    +  |+++++++ .+++|.+||..+
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~d--g~~l~v~~~~~~~v~v~D~~t  257 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYE--DRYTIAGAYWPPQFAIMDGET  257 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCT--TTEEEEEEEESSEEEEEETTT
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCC--CCEEEEEEccCCeEEEEeccc
Confidence            7899999999999999999999999984234566777774 44579999986    5  78888777 589999999876


Q ss_pred             CCceEEeEEeec----------C-CCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEe
Q 036510           89 SNEWIKDHVFED----------H-KSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSW  157 (288)
Q Consensus        89 ~~~~~~~~~~~~----------h-~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~  157 (288)
                      ...   ...+..          | ...+.++.++|++ ..++++...++.|.+||............  .+...+..+.|
T Consensus       258 ~~~---~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~-~~~~vs~~~~g~i~vvd~~~~~~l~~~~i--~~~~~~~~~~~  331 (543)
T 1nir_A          258 LEP---KQIVSTRGMTVDTQTYHPEPRVAAIIASHEH-PEFIVNVKETGKVLLVNYKDIDNLTVTSI--GAAPFLHDGGW  331 (543)
T ss_dssp             CCE---EEEEECCEECSSSCCEESCCCEEEEEECSSS-SEEEEEETTTTEEEEEECTTSSSCEEEEE--ECCSSCCCEEE
T ss_pred             ccc---ceeecccCcccCccccccCCceEEEEECCCC-CEEEEEECCCCeEEEEEecCCCcceeEEe--ccCcCccCceE
Confidence            552   233332          2 2368899999975 56788888999999999976543332222  24556778999


Q ss_pred             CCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccc----cCCcceEEEEecCCCCCCCcEEEEEe-
Q 036510          158 APSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQ----MHTDWVRDVAWAPNLGLPKSTIASAS-  232 (288)
Q Consensus       158 ~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~h~~~V~~v~~sp~~~~~~~~l~s~s-  232 (288)
                      +|++.             .+++++..+++|.+||..++.    ++..+.    .|......+ ++|+.   +..+|+++ 
T Consensus       332 spdg~-------------~l~va~~~~~~v~v~D~~tg~----l~~~i~~g~~ph~g~g~~~-~~p~~---g~~~~s~~~  390 (543)
T 1nir_A          332 DSSHR-------------YFMTAANNSNKVAVIDSKDRR----LSALVDVGKTPHPGRGANF-VHPKY---GPVWSTSHL  390 (543)
T ss_dssp             CTTSC-------------EEEEEEGGGTEEEEEETTTTE----EEEEEECSSSBCCTTCEEE-EETTT---EEEEEEEBS
T ss_pred             CCCCC-------------EEEEEecCCCeEEEEECCCCe----EEEeeccCCCCCCCCCccc-CCCCC---ccEEEeccC
Confidence            99872             345566778999999998873    333333    265444443 46764   35677776 


Q ss_pred             CCCcEEEEEeecCCC----cccceEeeccccCeEEEEeecCCCEEEEEe-------CCCcEEEeEcC
Q 036510          233 EDGKVIIWTVAREGD----QWEGKVLHDFKTPVYRVSWSLTGNILAVAD-------GNNNVTLWEEA  288 (288)
Q Consensus       233 ~D~~i~iw~~~~~~~----~~~~~~~~~~~~~i~~~~~spdg~~l~s~~-------~d~~v~~w~~~  288 (288)
                      .|++|.+|++...+.    ......+..+...+..++|||||++|++++       .+++|.|||++
T Consensus       391 ~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~  457 (543)
T 1nir_A          391 GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLK  457 (543)
T ss_dssp             SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETT
T ss_pred             CCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECC
Confidence            689999999876321    112344555666788999999999999987       27899999963

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=2.1e-22  Score=168.49  Aligned_cols=241  Identities=11%  Similarity=0.058  Sum_probs=169.4

Q ss_pred             ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCC-CCceeeEEEecc-ccCeEEEEecCCCCCCEEEEee--CCCcEE
Q 036510            7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGN-NTSQHLAKLSGH-KGAVWEVAWAHPKFGSILASCS--FDGTVI   82 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~-~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s--~d~~v~   82 (288)
                      +..|...|.+++|+|+|++|++++ ++.|++||+.. .  +....+.+| ...+.+++|+++  +++|++++  .++..+
T Consensus        37 ~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~spd--g~~l~~~~~~~~~~~~  111 (297)
T 2ojh_A           37 VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP--SPEKVDTGFATICNNDHGISPD--GALYAISDKVEFGKSA  111 (297)
T ss_dssp             EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCC--SCEECCCTTCCCBCSCCEECTT--SSEEEEEECTTTSSCE
T ss_pred             eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC--CceEeccccccccccceEECCC--CCEEEEEEeCCCCcce
Confidence            346888999999999999999887 78999999865 3  333444455 367888999865  88999988  446677


Q ss_pred             EeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCC
Q 036510           83 IWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTA  162 (288)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~  162 (288)
                      ||.+.....  ....+..+ ..+.+++|+|++ ..++++++.++.+++|++......  ......+...+.++.|+|++ 
T Consensus       112 l~~~~~~~~--~~~~~~~~-~~~~~~~~spdg-~~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~s~dg-  184 (297)
T 2ojh_A          112 IYLLPSTGG--TPRLMTKN-LPSYWHGWSPDG-KSFTYCGIRDQVFDIYSMDIDSGV--ETRLTHGEGRNDGPDYSPDG-  184 (297)
T ss_dssp             EEEEETTCC--CCEECCSS-SSEEEEEECTTS-SEEEEEEEETTEEEEEEEETTTCC--EEECCCSSSCEEEEEECTTS-
T ss_pred             EEEEECCCC--ceEEeecC-CCccceEECCCC-CEEEEEECCCCceEEEEEECCCCc--ceEcccCCCccccceECCCC-
Confidence            776532221  12233333 358999999984 334447788999999997543221  23334566789999999987 


Q ss_pred             CCceecccccCCCceeE-EeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCC-------
Q 036510          163 PGALVGSGFLDPVQKLC-SGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASED-------  234 (288)
Q Consensus       163 ~~~~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D-------  234 (288)
                                   +.|+ ++..++.++||++....   .....+..|...+.++.|+|++    ++|++++.|       
T Consensus       185 -------------~~l~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~s~dg----~~l~~~~~~~~~~~~~  244 (297)
T 2ojh_A          185 -------------RWIYFNSSRTGQMQIWRVRVDG---SSVERITDSAYGDWFPHPSPSG----DKVVFVSYDADVFDHP  244 (297)
T ss_dssp             -------------SEEEEEECTTSSCEEEEEETTS---SCEEECCCCSEEEEEEEECTTS----SEEEEEEEETTCCSCC
T ss_pred             -------------CEEEEEecCCCCccEEEECCCC---CCcEEEecCCcccCCeEECCCC----CEEEEEEcCCCCCccc
Confidence                         4455 44468999999997322   1234456677789999999984    678888765       


Q ss_pred             ----CcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCC
Q 036510          235 ----GKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNN  280 (288)
Q Consensus       235 ----~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~  280 (288)
                          ..|.+||+..... .......++...+..++|+|||++|++++.|.
T Consensus       245 ~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          245 RDLDVRVQLMDMDGGNV-ETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             SSEEEEEEEEETTSCSC-EEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             ccCceEEEEEecCCCCc-eeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence                5699999865321 11122235567889999999999999887664

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.91  E-value=1.3e-21  Score=173.83  Aligned_cols=223  Identities=15%  Similarity=0.105  Sum_probs=165.3

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCC---cEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEE-EeeCCCc-
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDY---SIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILA-SCSFDGT-   80 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~---~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~s~d~~-   80 (288)
                      .+.+|...|.+++|+|+|++|++++.|+   .|++||+..+  +. ..+..|...+.+++|+|+  |+.|+ +++.|+. 
T Consensus       173 ~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg--~~-~~l~~~~~~~~~~~~spd--g~~la~~~~~~g~~  247 (415)
T 2hqs_A          173 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG--AV-RQVASFPRHNGAPAFSPD--GSKLAFALSKTGSL  247 (415)
T ss_dssp             EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC--CE-EEEECCSSCEEEEEECTT--SSEEEEEECTTSSC
T ss_pred             EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC--cE-EEeecCCCcccCEEEcCC--CCEEEEEEecCCCc
Confidence            3457899999999999999999999885   9999998643  22 356788889999999875  78777 7776665 


Q ss_pred             -EEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeC-CC--cEEEEeecCCCCeeeEEeeccCCCCeeEEE
Q 036510           81 -VIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSS-DG--NISVFTARADGGWDTSRIDQAHPVGVTSVS  156 (288)
Q Consensus        81 -v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~  156 (288)
                       |.+||+.++.    ...+..|...+.+++|+|+  +..+++++. ++  .|++||+..+..    .....+...+.++.
T Consensus       248 ~i~~~d~~~~~----~~~l~~~~~~~~~~~~spd--g~~l~~~s~~~g~~~i~~~d~~~~~~----~~l~~~~~~~~~~~  317 (415)
T 2hqs_A          248 NLYVMDLASGQ----IRQVTDGRSNNTEPTWFPD--SQNLAFTSDQAGRPQVYKVNINGGAP----QRITWEGSQNQDAD  317 (415)
T ss_dssp             EEEEEETTTCC----EEECCCCSSCEEEEEECTT--SSEEEEEECTTSSCEEEEEETTSSCC----EECCCSSSEEEEEE
T ss_pred             eEEEEECCCCC----EEeCcCCCCcccceEECCC--CCEEEEEECCCCCcEEEEEECCCCCE----EEEecCCCcccCeE
Confidence             8899987654    2346678889999999998  555666654 55  566667765432    22234556788999


Q ss_pred             eCCCCCCCceecccccCCCceeEEeecC---CcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeC
Q 036510          157 WAPSTAPGALVGSGFLDPVQKLCSGGCD---NTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE  233 (288)
Q Consensus       157 ~~p~~~~~~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~  233 (288)
                      |+|++              ++|+.++.+   ..|.+||+.++..     ..+..|. .+.++.|+|++    ++|++++.
T Consensus       318 ~spdG--------------~~l~~~~~~~g~~~i~~~d~~~~~~-----~~l~~~~-~~~~~~~spdg----~~l~~~s~  373 (415)
T 2hqs_A          318 VSSDG--------------KFMVMVSSNGGQQHIAKQDLATGGV-----QVLSSTF-LDETPSLAPNG----TMVIYSSS  373 (415)
T ss_dssp             ECTTS--------------SEEEEEEECSSCEEEEEEETTTCCE-----EECCCSS-SCEEEEECTTS----SEEEEEEE
T ss_pred             ECCCC--------------CEEEEEECcCCceEEEEEECCCCCE-----EEecCCC-CcCCeEEcCCC----CEEEEEEc
Confidence            99997              667766654   5799999887631     2344444 78999999984    67888888


Q ss_pred             CC---cEEEEEeecCCCcccceEeeccccCeEEEEeecCCC
Q 036510          234 DG---KVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGN  271 (288)
Q Consensus       234 D~---~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~  271 (288)
                      |+   .|.+||+...    ....+..+.+.|.+++|+|...
T Consensus       374 ~~~~~~l~~~d~~g~----~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          374 QGMGSVLNLVSTDGR----FKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             ETTEEEEEEEETTSC----CEEECCCSSSEEEEEEECCCCC
T ss_pred             CCCccEEEEEECCCC----cEEEeeCCCCCCcCCccccccc
Confidence            77   7899987532    2345566778899999999754

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.90  E-value=6.3e-22  Score=176.73  Aligned_cols=249  Identities=17%  Similarity=0.196  Sum_probs=165.7

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCC--------CCceeeE-----EEeccccCeEEEEecCCCCCCEEE----
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGN--------NTSQHLA-----KLSGHKGAVWEVAWAHPKFGSILA----   73 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~--------~~~~~~~-----~~~~h~~~v~~~~~~~~~~~~~l~----   73 (288)
                      ...++.+++++++.++++++.|+ +++|+...        .....+.     ..-.|...|.+++|+++  +++|+    
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spd--g~~lav~~~  112 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCD--NLTLSACMM  112 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTT--SCEEEEEEE
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCC--CCEEEEEEe
Confidence            44678899999999999999887 88986521        0000011     11235678999999865  78888    


Q ss_pred             EeeCCCcEEEeecCCC--------CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEee
Q 036510           74 SCSFDGTVIIWKEGNS--------NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRID  145 (288)
Q Consensus        74 s~s~d~~v~iwd~~~~--------~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~  145 (288)
                      +++.|++|+|||+.+.        ........+.+|...|.+++|+|+. +.++++++.||+|++||++.+.   .....
T Consensus       113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~-~~~las~s~Dg~v~iwD~~~~~---~~~~~  188 (434)
T 2oit_A          113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTV-PSMVAVCLADGSIAVLQVTETV---KVCAT  188 (434)
T ss_dssp             ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSC-TTEEEEEETTSCEEEEEESSSE---EEEEE
T ss_pred             ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCC-CCEEEEEECCCeEEEEEcCCCc---ceeec
Confidence            8999999999998543        1112234556799999999999974 5679999999999999998752   22233


Q ss_pred             ccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeec--c-ccCCcceEEEEecCCCC
Q 036510          146 QAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPA--L-QMHTDWVRDVAWAPNLG  222 (288)
Q Consensus       146 ~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~-~~h~~~V~~v~~sp~~~  222 (288)
                      .+|...|.+++|+|++              ++|++|+.|++|++||++ +.........  . ..|...|.++.|+++. 
T Consensus       189 ~~~~~~v~~v~wspdg--------------~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~-  252 (434)
T 2oit_A          189 LPSTVAVTSVCWSPKG--------------KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTY-  252 (434)
T ss_dssp             ECGGGCEEEEEECTTS--------------SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETT-
T ss_pred             cCCCCceeEEEEcCCC--------------CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCc-
Confidence            4577889999999987              789999999999999987 2211111111  1 1244589999999973 


Q ss_pred             CCCcEEEE-EeCCC------cEEEEEeecCCCc--ccceEeec-------cccCeEEEEeecCCCEEEEEeCCC-cEEEe
Q 036510          223 LPKSTIAS-ASEDG------KVIIWTVAREGDQ--WEGKVLHD-------FKTPVYRVSWSLTGNILAVADGNN-NVTLW  285 (288)
Q Consensus       223 ~~~~~l~s-~s~D~------~i~iw~~~~~~~~--~~~~~~~~-------~~~~i~~~~~spdg~~l~s~~~d~-~v~~w  285 (288)
                         .++++ .+.|+      .+++|++...+..  ..-....+       ...+-.-+.+-+|.+++++++... .|.|.
T Consensus       253 ---~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl  329 (434)
T 2oit_A          253 ---VFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSIL  329 (434)
T ss_dssp             ---EEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEE
T ss_pred             ---eEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEE
Confidence               34433 33443      3899999764321  00011111       122334444558888887776533 34443

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.89  E-value=1.3e-19  Score=157.25  Aligned_cols=254  Identities=11%  Similarity=0.119  Sum_probs=164.2

Q ss_pred             cccceEEEEEcCCCCEEEEeeCC----CcEEEEEeCCCCc--eeeEEEeccccCeEEEEecCCCCCCEEEEee-CCCcEE
Q 036510           10 HEDTVHDVAMDYYGKRLATASSD----YSIKIIGVGNNTS--QHLAKLSGHKGAVWEVAWAHPKFGSILASCS-FDGTVI   82 (288)
Q Consensus        10 h~~~v~~~~~s~~g~~l~s~~~d----~~i~lwd~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~d~~v~   82 (288)
                      +...+..++|+|+|++|++++.+    +.+.+|+++...+  +.+.....+......+++  +  +++|+.++ .++++.
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--d--g~~l~~~~~~~~~v~  123 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--N--GKNIVTANYSGGSIT  123 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--C--SSEEEEEETTTTEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--C--CCEEEEEECCCCEEE
Confidence            45556678999999999999986    7999999865323  334445545566777887  2  56665555 689999


Q ss_pred             EeecCCCCceEEeEE-e--ec--------CCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCC------eee----
Q 036510           83 IWKEGNSNEWIKDHV-F--ED--------HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGG------WDT----  141 (288)
Q Consensus        83 iwd~~~~~~~~~~~~-~--~~--------h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~------~~~----  141 (288)
                      +|++........... +  .+        +...+.+++|+|++ ..+++++..++.|.+|++.....      +..    
T Consensus       124 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~  202 (361)
T 3scy_A          124 VFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG-KYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTP  202 (361)
T ss_dssp             EEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEE
T ss_pred             EEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC-CEEEEEeCCCCEEEEEEEcCCCCcccccceeecccc
Confidence            999864332111111 1  11        12235789999984 23555556688999999876442      211    


Q ss_pred             EEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEee-cCCcEEEEEEeCCcee-eeeeeccccCCcceEEEEecC
Q 036510          142 SRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGG-CDNTVKVWKLYNGIWK-MDCFPALQMHTDWVRDVAWAP  219 (288)
Q Consensus       142 ~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~-~~~~~~~~~h~~~V~~v~~sp  219 (288)
                      ......+......+.|+|++              ++++.++ .++.|.+||+.++... ...+.....+.....++.|+|
T Consensus       203 ~~~~~~~~~~~~~~~~spdg--------------~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp  268 (361)
T 3scy_A          203 EAFKVAPGSGPRHLIFNSDG--------------KFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP  268 (361)
T ss_dssp             EEEECCTTCCEEEEEECTTS--------------SEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT
T ss_pred             cceecCCCCCCeEEEEcCCC--------------CEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC
Confidence            12222344567889999987              5454444 6899999999876321 111222334444568999999


Q ss_pred             CCCCCCcEEEEEe-C-CCcEEEEEeecCCCc-ccceEeeccccCeEEEEeecCCCEEEEEe-CCCcEEEeEc
Q 036510          220 NLGLPKSTIASAS-E-DGKVIIWTVAREGDQ-WEGKVLHDFKTPVYRVSWSLTGNILAVAD-GNNNVTLWEE  287 (288)
Q Consensus       220 ~~~~~~~~l~s~s-~-D~~i~iw~~~~~~~~-~~~~~~~~~~~~i~~~~~spdg~~l~s~~-~d~~v~~w~~  287 (288)
                      ++    ++|++++ . ++.|.+|++...... .....+.. ...+..++|+|||++|++++ .++.|.+|++
T Consensus       269 dg----~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~  335 (361)
T 3scy_A          269 DG----KYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFER  335 (361)
T ss_dssp             TS----SEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred             CC----CEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEE
Confidence            85    5665554 4 589999999632111 11112222 44678999999999998888 5789999763

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.89  E-value=1.9e-20  Score=160.27  Aligned_cols=250  Identities=10%  Similarity=0.053  Sum_probs=163.8

Q ss_pred             cccceEEEEEcCCCCEEEEeeC-CCcEEEEEeCCCCcee-eEEEeccccCeEEEEecCCCCCCEEEEeeCCC---cEEEe
Q 036510           10 HEDTVHDVAMDYYGKRLATASS-DYSIKIIGVGNNTSQH-LAKLSGHKGAVWEVAWAHPKFGSILASCSFDG---TVIIW   84 (288)
Q Consensus        10 h~~~v~~~~~s~~g~~l~s~~~-d~~i~lwd~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~---~v~iw   84 (288)
                      +...+ .++|+|+|++|++++. ++.|.+||....  +. ...+..+..+..+++|+++  +++++++..++   .|.+|
T Consensus        39 ~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~s~d--g~~l~~~~~~~~~~~i~v~  113 (331)
T 3u4y_A           39 GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLE--PPKVVAIQEGQSSMADVDITPD--DQFAVTVTGLNHPFNMQSY  113 (331)
T ss_dssp             CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSS--SCEEEEEEECSSCCCCEEECTT--SSEEEECCCSSSSCEEEEE
T ss_pred             cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC--ceeEEecccCCCCccceEECCC--CCEEEEecCCCCcccEEEE
Confidence            34555 8999999997766665 899999998644  33 5566666666655999864  78888555553   99999


Q ss_pred             ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCc-EEEEeecCCCCeeeE-EeeccCCCCeeEEEeCCCCC
Q 036510           85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGN-ISVFTARADGGWDTS-RIDQAHPVGVTSVSWAPSTA  162 (288)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~-i~i~d~~~~~~~~~~-~~~~~~~~~v~~i~~~p~~~  162 (288)
                      |+.++.   ....+..+ ....+++|+|++ ..+++++..++. |.+|++...+..... ............+.|+|++.
T Consensus       114 d~~~~~---~~~~~~~~-~~~~~~~~spdg-~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~  188 (331)
T 3u4y_A          114 SFLKNK---FISTIPIP-YDAVGIAISPNG-NGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGN  188 (331)
T ss_dssp             ETTTTE---EEEEEECC-TTEEEEEECTTS-SCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSS
T ss_pred             ECCCCC---eEEEEECC-CCccceEECCCC-CEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCC
Confidence            997654   23344433 456899999984 235666667788 999999865433211 11112344578899999872


Q ss_pred             CCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEE-EEEeCCCcEEEEE
Q 036510          163 PGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTI-ASASEDGKVIIWT  241 (288)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l-~s~s~D~~i~iw~  241 (288)
                                   .+++++..++.|.+||+.++.. .+.+..+.. ...+..+.|+|++    ++| ++...++.|.+||
T Consensus       189 -------------~l~v~~~~~~~v~v~d~~~~~~-~~~~~~~~~-~~~~~~~~~spdg----~~l~v~~~~~~~i~~~d  249 (331)
T 3u4y_A          189 -------------FAFVANLIGNSIGILETQNPEN-ITLLNAVGT-NNLPGTIVVSRDG----STVYVLTESTVDVFNFN  249 (331)
T ss_dssp             -------------EEEEEETTTTEEEEEECSSTTS-CEEEEEEEC-SSCCCCEEECTTS----SEEEEECSSEEEEEEEE
T ss_pred             -------------EEEEEeCCCCeEEEEECCCCcc-cceeeeccC-CCCCceEEECCCC----CEEEEEEcCCCEEEEEE
Confidence                         2456666789999999987642 011333333 3456889999985    444 4445688999999


Q ss_pred             eecCCCcccceEeec---cccC---eEEEEeecCCCEEEEEeC-CCcEEEeEcC
Q 036510          242 VAREGDQWEGKVLHD---FKTP---VYRVSWSLTGNILAVADG-NNNVTLWEEA  288 (288)
Q Consensus       242 ~~~~~~~~~~~~~~~---~~~~---i~~~~~spdg~~l~s~~~-d~~v~~w~~~  288 (288)
                      +...+..........   ...+   ...++|+|||++|++++. +++|++||++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~  303 (331)
T 3u4y_A          250 QLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTIS  303 (331)
T ss_dssp             TTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             CCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence            864321000011111   1122   245899999999877665 5699999963

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.88  E-value=1.5e-21  Score=184.91  Aligned_cols=239  Identities=12%  Similarity=0.130  Sum_probs=166.8

Q ss_pred             ccceEEEEEcCCCCEEEEeeC-CC-----cEEEEEeCCCCceeeEEEecccc------------------------CeEE
Q 036510           11 EDTVHDVAMDYYGKRLATASS-DY-----SIKIIGVGNNTSQHLAKLSGHKG------------------------AVWE   60 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~-d~-----~i~lwd~~~~~~~~~~~~~~h~~------------------------~v~~   60 (288)
                      ...|..++|+|||++|++++. |+     +|++||+..+  +....+..|..                        .+..
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  113 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSG--QTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD  113 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTC--CEEEEECGGGTC--------------------CCEESCC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCC--ceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence            456889999999999999998 88     8999998654  33344444432                        3788


Q ss_pred             EEecCCCCCCEEEEeeCCCcEEEeecCCCC--ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCC
Q 036510           61 VAWAHPKFGSILASCSFDGTVIIWKEGNSN--EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGG  138 (288)
Q Consensus        61 ~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~--~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~  138 (288)
                      ++|+++  |++|++++. +.|.+||+.++.  .   ...+..|...+.+++|+|+  +..++.++ ++.|++||+..+..
T Consensus       114 ~~~SpD--g~~l~~~~~-~~i~~~d~~~~~~~~---~~~l~~~~~~~~~~~~SPD--G~~la~~~-~~~i~~~d~~~g~~  184 (741)
T 2ecf_A          114 YQWSPD--AQRLLFPLG-GELYLYDLKQEGKAA---VRQLTHGEGFATDAKLSPK--GGFVSFIR-GRNLWVIDLASGRQ  184 (741)
T ss_dssp             CEECTT--SSEEEEEET-TEEEEEESSSCSTTS---CCBCCCSSSCEEEEEECTT--SSEEEEEE-TTEEEEEETTTTEE
T ss_pred             eEECCC--CCEEEEEeC-CcEEEEECCCCCcce---EEEcccCCcccccccCCCC--CCEEEEEe-CCcEEEEecCCCCE
Confidence            999875  899998887 999999997651  1   1235567788999999998  56677776 56899999875421


Q ss_pred             eeeEEeeccCCC----------------CeeEEEeCCCCCCCceecccccCCCceeEEeecCC-----------------
Q 036510          139 WDTSRIDQAHPV----------------GVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDN-----------------  185 (288)
Q Consensus       139 ~~~~~~~~~~~~----------------~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~-----------------  185 (288)
                         ......+..                .+..+.|+|++              +.|+.++.|+                 
T Consensus       185 ---~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg--------------~~l~~~~~d~~~~~~~~~~~~~p~~~~  247 (741)
T 2ecf_A          185 ---MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD--------------SAIAYARIDESPVPVQKRYEVYADRTD  247 (741)
T ss_dssp             ---EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS--------------SCEEEEEEECTTSCEEEEEEECSSCEE
T ss_pred             ---EEeccCCccceeccccceeeeeccccccceEECCCC--------------CEEEEEEEcCCCCceEecCCCCCCccc
Confidence               122122222                14679999997              5666666554                 


Q ss_pred             ----------------cEEEEEEeC-CceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeC-----CCcEEEEEee
Q 036510          186 ----------------TVKVWKLYN-GIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE-----DGKVIIWTVA  243 (288)
Q Consensus       186 ----------------~i~iwd~~~-~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~-----D~~i~iw~~~  243 (288)
                                      .|.+||+.+ +..  ..+.....|...+.++.| ||+    ++|+.++.     +..|++||+.
T Consensus       248 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~-pDg----~~l~~~~~~~~~~~~~i~~~d~~  320 (741)
T 2ecf_A          248 VIEQRYPAAGDANVQVKLGVISPAEQAQT--QWIDLGKEQDIYLARVNW-RDP----QHLSFQRQSRDQKKLDLVEVTLA  320 (741)
T ss_dssp             EEEEECCBTTSCCCEEEEEEECSSTTCCC--EEECCCSCSSEEEEEEEE-EET----TEEEEEEEETTSSEEEEEEEETT
T ss_pred             ceEeecCCCCCCCCeeEEEEEECCCCCce--EEecCCCCcceEEEEEEe-CCC----CEEEEEEecccCCeEEEEEEECC
Confidence                            678888876 531  111111257788999999 984    66776653     5679999986


Q ss_pred             cCCCcccceEeeccc-c---CeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          244 REGDQWEGKVLHDFK-T---PVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       244 ~~~~~~~~~~~~~~~-~---~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ....   ..+...+. .   .+..++|+|||+++++++.|+.++||..
T Consensus       321 ~g~~---~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  365 (741)
T 2ecf_A          321 SNQQ---RVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRI  365 (741)
T ss_dssp             TCCE---EEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEE
T ss_pred             CCce---EEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEE
Confidence            5321   12222222 2   3468999999999999999998888863

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.88  E-value=2.5e-20  Score=155.78  Aligned_cols=223  Identities=16%  Similarity=0.188  Sum_probs=157.3

Q ss_pred             EeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCC-CCceEEeEEeecC-CCce
Q 036510           28 TASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN-SNEWIKDHVFEDH-KSSV  105 (288)
Q Consensus        28 s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~~~~~h-~~~v  105 (288)
                      +++.|++|++||+..+  + ...+..|...|.+++|+++  +++|++++ ++.|.+||+.. +..   ......+ ...+
T Consensus        17 ~~~~~~~i~~~d~~~~--~-~~~~~~~~~~v~~~~~spd--g~~l~~~~-~~~i~~~d~~~~~~~---~~~~~~~~~~~~   87 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTR--K-MRVVWQTPELFEAPNWSPD--GKYLLLNS-EGLLYRLSLAGDPSP---EKVDTGFATICN   87 (297)
T ss_dssp             -CCCCEEEEEEETTTT--E-EEEEEEESSCCEEEEECTT--SSEEEEEE-TTEEEEEESSSCCSC---EECCCTTCCCBC
T ss_pred             CCCcceeEEEEeCCCC--c-eeeeccCCcceEeeEECCC--CCEEEEEc-CCeEEEEeCCCCCCc---eEeccccccccc
Confidence            4678899999998643  3 3356678999999999875  88898876 78999999976 542   2223344 4678


Q ss_pred             eEEEeccCCCCeEEEEEe--CCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeE-Eee
Q 036510          106 NSIDWAPHELGLCLACGS--SDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLC-SGG  182 (288)
Q Consensus       106 ~~l~~~p~~~~~~l~sg~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~-s~~  182 (288)
                      .+++|+|+  +..+++++  .++...||.+......  ...... ...+..+.|+|++              +.|+ +++
T Consensus        88 ~~~~~spd--g~~l~~~~~~~~~~~~l~~~~~~~~~--~~~~~~-~~~~~~~~~spdg--------------~~l~~~~~  148 (297)
T 2ojh_A           88 NDHGISPD--GALYAISDKVEFGKSAIYLLPSTGGT--PRLMTK-NLPSYWHGWSPDG--------------KSFTYCGI  148 (297)
T ss_dssp             SCCEECTT--SSEEEEEECTTTSSCEEEEEETTCCC--CEECCS-SSSEEEEEECTTS--------------SEEEEEEE
T ss_pred             cceEECCC--CCEEEEEEeCCCCcceEEEEECCCCc--eEEeec-CCCccceEECCCC--------------CEEEEEEC
Confidence            99999998  56677776  4456667666432211  112222 2348889999987              4444 888


Q ss_pred             cCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEe-CCCcEEEEEeecCCCcccceEeeccccCe
Q 036510          183 CDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASAS-EDGKVIIWTVAREGDQWEGKVLHDFKTPV  261 (288)
Q Consensus       183 ~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s-~D~~i~iw~~~~~~~~~~~~~~~~~~~~i  261 (288)
                      .|+.++||++.....   ....+..|...+.++.|+|++    .+|+.++ .|+.+++|++.....  ....+..+...+
T Consensus       149 ~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~s~dg----~~l~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~  219 (297)
T 2ojh_A          149 RDQVFDIYSMDIDSG---VETRLTHGEGRNDGPDYSPDG----RWIYFNSSRTGQMQIWRVRVDGS--SVERITDSAYGD  219 (297)
T ss_dssp             ETTEEEEEEEETTTC---CEEECCCSSSCEEEEEECTTS----SEEEEEECTTSSCEEEEEETTSS--CEEECCCCSEEE
T ss_pred             CCCceEEEEEECCCC---cceEcccCCCccccceECCCC----CEEEEEecCCCCccEEEECCCCC--CcEEEecCCccc
Confidence            899999999864321   123445677789999999984    5566555 599999999874322  123444555678


Q ss_pred             EEEEeecCCCEEEEEeCC-----------CcEEEeEc
Q 036510          262 YRVSWSLTGNILAVADGN-----------NNVTLWEE  287 (288)
Q Consensus       262 ~~~~~spdg~~l~s~~~d-----------~~v~~w~~  287 (288)
                      ..++|+|||++|++++.+           +.|++||.
T Consensus       220 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~  256 (297)
T 2ojh_A          220 WFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDM  256 (297)
T ss_dssp             EEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEET
T ss_pred             CCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEec
Confidence            899999999999998876           56999985

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.88  E-value=1.3e-20  Score=172.81  Aligned_cols=255  Identities=9%  Similarity=0.065  Sum_probs=178.5

Q ss_pred             cccceEEEEEcC----CCCEEEEeeC-CCcEEEEEeCCCCceeeEEEec----------ccc-CeEEEEecCCCCCCEEE
Q 036510           10 HEDTVHDVAMDY----YGKRLATASS-DYSIKIIGVGNNTSQHLAKLSG----------HKG-AVWEVAWAHPKFGSILA   73 (288)
Q Consensus        10 h~~~v~~~~~s~----~g~~l~s~~~-d~~i~lwd~~~~~~~~~~~~~~----------h~~-~v~~~~~~~~~~~~~l~   73 (288)
                      +...+..++|+|    +|++|++++. +++|.+||..  +.+.+.++..          |.. .+..+.++++ .+.+++
T Consensus       220 ~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~--t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~-~~~~~v  296 (543)
T 1nir_A          220 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE--TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE-HPEFIV  296 (543)
T ss_dssp             CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT--TCCEEEEEECCEECSSSCCEESCCCEEEEEECSS-SSEEEE
T ss_pred             cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc--ccccceeecccCcccCccccccCCceEEEEECCC-CCEEEE
Confidence            344578899999    9999999885 8999999974  3456666654          223 6889999875 356788


Q ss_pred             EeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEee-ccCCCCe
Q 036510           74 SCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRID-QAHPVGV  152 (288)
Q Consensus        74 s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~v  152 (288)
                      +...+++|.+||..+.... ....+. +...+..+.|+|++ ..+++++..+++|.+||++++......... ..|+...
T Consensus       297 s~~~~g~i~vvd~~~~~~l-~~~~i~-~~~~~~~~~~spdg-~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g  373 (543)
T 1nir_A          297 NVKETGKVLLVNYKDIDNL-TVTSIG-AAPFLHDGGWDSSH-RYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRG  373 (543)
T ss_dssp             EETTTTEEEEEECTTSSSC-EEEEEE-CCSSCCCEEECTTS-CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTC
T ss_pred             EECCCCeEEEEEecCCCcc-eeEEec-cCcCccCceECCCC-CEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCC
Confidence            9999999999999765432 222333 55678889999984 234556667899999999876322221111 1255443


Q ss_pred             eEEEeCCCCCCCceecccccCCCceeEEee-cCCcEEEEEEeCCc---eeeeeeeccccCCcceEEEEecCCCCCCCcEE
Q 036510          153 TSVSWAPSTAPGALVGSGFLDPVQKLCSGG-CDNTVKVWKLYNGI---WKMDCFPALQMHTDWVRDVAWAPNLGLPKSTI  228 (288)
Q Consensus       153 ~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~---~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l  228 (288)
                      ..+ ++|++             +.++++++ .|++|++||+.+..   ...++++.+.+|...+..|.|+|++    ++|
T Consensus       374 ~~~-~~p~~-------------g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg----~~l  435 (543)
T 1nir_A          374 ANF-VHPKY-------------GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS----SHL  435 (543)
T ss_dssp             EEE-EETTT-------------EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTC----CEE
T ss_pred             ccc-CCCCC-------------ccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCC----CcE
Confidence            333 35653             25677775 68999999997621   1135777888898888999999985    678


Q ss_pred             EEEe-------CCCcEEEEEeecCCCcccceEe------eccccCeEEEEeecCCCEEEEEe-----CCCcEEEeEcC
Q 036510          229 ASAS-------EDGKVIIWTVAREGDQWEGKVL------HDFKTPVYRVSWSLTGNILAVAD-----GNNNVTLWEEA  288 (288)
Q Consensus       229 ~s~s-------~D~~i~iw~~~~~~~~~~~~~~------~~~~~~i~~~~~spdg~~l~s~~-----~d~~v~~w~~~  288 (288)
                      .+++       .+++|.+||+.......+...+      .++...+..+.|+|||++++++.     .|++|.|||.+
T Consensus       436 ~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~  513 (543)
T 1nir_A          436 YVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK  513 (543)
T ss_dssp             EECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETT
T ss_pred             EEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECC
Confidence            8876       2779999999765322111111      24456799999999999988762     47999999953

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=1.4e-19  Score=154.99  Aligned_cols=237  Identities=11%  Similarity=0.070  Sum_probs=152.8

Q ss_pred             EEEEeeCCCcEEEEEeCC-CCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC-CcEEEeecCC-CCceEEeEEeecC
Q 036510           25 RLATASSDYSIKIIGVGN-NTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD-GTVIIWKEGN-SNEWIKDHVFEDH  101 (288)
Q Consensus        25 ~l~s~~~d~~i~lwd~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-~~v~iwd~~~-~~~~~~~~~~~~h  101 (288)
                      ++++++.|+.|++|+++. +..+.+.. ..|...+..++|+++  +++|++++.+ +.|++|++.. .........+..+
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spd--g~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~   83 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPD--KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP   83 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTT--SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCC--CCEEEEeecCCCeEEEEEecCCCCceeeccccccC
Confidence            455557899999999853 22233333 357778899999865  7878877776 9999999862 1223333344444


Q ss_pred             CCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEe
Q 036510          102 KSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSG  181 (288)
Q Consensus       102 ~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~  181 (288)
                      . .+..++|+|++ ..+++++..++.|.+||+..+.......... ....+.++.|+|++              +.++++
T Consensus        84 ~-~~~~~~~s~dg-~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg--------------~~l~~~  146 (343)
T 1ri6_A           84 G-SLTHISTDHQG-QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDN--------------RTLWVP  146 (343)
T ss_dssp             S-CCSEEEECTTS-SEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTS--------------SEEEEE
T ss_pred             C-CCcEEEEcCCC-CEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCC--------------CEEEEe
Confidence            3 78999999984 2344455568899999996221111222222 23457889999987              455555


Q ss_pred             e-cCCcEEEEEEeC-Cceeeeeee--cccc-CCcceEEEEecCCCCCCCcEE-EEEeCCCcEEEEEeecCCCcc-cceEe
Q 036510          182 G-CDNTVKVWKLYN-GIWKMDCFP--ALQM-HTDWVRDVAWAPNLGLPKSTI-ASASEDGKVIIWTVAREGDQW-EGKVL  254 (288)
Q Consensus       182 ~-~d~~i~iwd~~~-~~~~~~~~~--~~~~-h~~~V~~v~~sp~~~~~~~~l-~s~s~D~~i~iw~~~~~~~~~-~~~~~  254 (288)
                      + .++.|.+||+.+ +..  ....  .+.. ....+..+.|+|++    +++ +++..++.|++|++....... .....
T Consensus       147 ~~~~~~v~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~pdg----~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~  220 (343)
T 1ri6_A          147 ALKQDRICLFTVSDDGHL--VAQDPAEVTTVEGAGPRHMVFHPNE----QYAYCVNELNSSVDVWELKDPHGNIECVQTL  220 (343)
T ss_dssp             EGGGTEEEEEEECTTSCE--EEEEEEEEECSTTCCEEEEEECTTS----SEEEEEETTTTEEEEEESSCTTSCCEEEEEE
T ss_pred             cCCCCEEEEEEecCCCce--eeecccccccCCCCCcceEEECCCC----CEEEEEeCCCCEEEEEEecCCCCcEEEEeec
Confidence            5 899999999986 421  1111  1222 23467899999985    444 555589999999986422111 11111


Q ss_pred             ecc------ccCeEEEEeecCCCEEEEEe-CCCcEEEeEc
Q 036510          255 HDF------KTPVYRVSWSLTGNILAVAD-GNNNVTLWEE  287 (288)
Q Consensus       255 ~~~------~~~i~~~~~spdg~~l~s~~-~d~~v~~w~~  287 (288)
                      ...      ...+..++|+|||++|+++. .++.|++|+.
T Consensus       221 ~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~  260 (343)
T 1ri6_A          221 DMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSV  260 (343)
T ss_dssp             ECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             cccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEE
Confidence            111      23567899999999887554 7899999985

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=1.6e-21  Score=174.06  Aligned_cols=202  Identities=17%  Similarity=0.194  Sum_probs=144.3

Q ss_pred             ccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC----------CceE---EeEEeecCCCceeEEEeccCCCCeEEE-
Q 036510           55 KGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS----------NEWI---KDHVFEDHKSSVNSIDWAPHELGLCLA-  120 (288)
Q Consensus        55 ~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~----------~~~~---~~~~~~~h~~~v~~l~~~p~~~~~~l~-  120 (288)
                      ...++.+++++.  +.++++++.|+ +++|+....          ....   ....+ .+...|.+++|+|+  +.+|+ 
T Consensus        36 ~~~~n~lavs~~--~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spd--g~~lav  109 (434)
T 2oit_A           36 KERSSLLAVSNK--YGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCD--NLTLSA  109 (434)
T ss_dssp             CSCCBCEEEETT--TTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTT--SCEEEE
T ss_pred             CCCccEEEEecC--CCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCC--CCEEEE
Confidence            335677888764  67888888888 899874210          0000   00112 35668999999998  55666 


Q ss_pred             ---EEeCCCcEEEEeecCC--------CCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEE
Q 036510          121 ---CGSSDGNISVFTARAD--------GGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKV  189 (288)
Q Consensus       121 ---sg~~d~~i~i~d~~~~--------~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i  189 (288)
                         +|+.|+.|++||++..        ..+.......+|...|.++.|+|+..             ++|++++.|++|++
T Consensus       110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~-------------~~las~s~Dg~v~i  176 (434)
T 2oit_A          110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVP-------------SMVAVCLADGSIAV  176 (434)
T ss_dssp             EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCT-------------TEEEEEETTSCEEE
T ss_pred             EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCC-------------CEEEEEECCCeEEE
Confidence               7889999999998643        12222345567889999999999842             78999999999999


Q ss_pred             EEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeec-------cccCeE
Q 036510          190 WKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHD-------FKTPVY  262 (288)
Q Consensus       190 wd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~-------~~~~i~  262 (288)
                      ||++++.    ......+|...|.+++|+|++    ++|++|+.|++|++||++. . .  ...+..       +...|.
T Consensus       177 wD~~~~~----~~~~~~~~~~~v~~v~wspdg----~~lasgs~dg~v~iwd~~~-~-~--~~~~~~~~~~~~~~~~~v~  244 (434)
T 2oit_A          177 LQVTETV----KVCATLPSTVAVTSVCWSPKG----KQLAVGKQNGTVVQYLPTL-Q-E--KKVIPCPPFYESDHPVRVL  244 (434)
T ss_dssp             EEESSSE----EEEEEECGGGCEEEEEECTTS----SCEEEEETTSCEEEECTTC-C-E--EEEECCCTTCCTTSCEEEE
T ss_pred             EEcCCCc----ceeeccCCCCceeEEEEcCCC----CEEEEEcCCCcEEEEccCC-c-c--cccccCCcccCCCCceeEE
Confidence            9998862    233445688899999999984    7899999999999999861 1 1  111111       123789


Q ss_pred             EEEeecCCCEEEEE-eCCC------cEEEeEc
Q 036510          263 RVSWSLTGNILAVA-DGNN------NVTLWEE  287 (288)
Q Consensus       263 ~~~~spdg~~l~s~-~~d~------~v~~w~~  287 (288)
                      +++|++++.++++. ..||      .+++|++
T Consensus       245 ~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l  276 (434)
T 2oit_A          245 DVLWIGTYVFAIVYAAADGTLETSPDVVMALL  276 (434)
T ss_dssp             EEEEEETTEEEEEEEETTCCSSSCCEEEEEEC
T ss_pred             EEEEecCceEEEEEccCCCccCCCCceEEEEe
Confidence            99999999887554 3443      3889985

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.87  E-value=2.6e-21  Score=178.63  Aligned_cols=234  Identities=9%  Similarity=0.065  Sum_probs=164.7

Q ss_pred             cccceEEEEEcCCCCEEEEeeC-CCcEEEEEeCCCCceeeEEEeccc-cCeEEEEecCCCCCCEEEEeeC---CCcEEEe
Q 036510           10 HEDTVHDVAMDYYGKRLATASS-DYSIKIIGVGNNTSQHLAKLSGHK-GAVWEVAWAHPKFGSILASCSF---DGTVIIW   84 (288)
Q Consensus        10 h~~~v~~~~~s~~g~~l~s~~~-d~~i~lwd~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~---d~~v~iw   84 (288)
                      +..+|++++|+|||++||+++. |++++||+++.+  + ..++..|. ..+..++|+++   +++++++.   +...+||
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g--~-~~~lt~~~~~~~~~~~~spd---~~l~~~~~~~g~~~~~l~   93 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG--E-TVKLNREPINSVLDPHYGVG---RVILVRDVSKGAEQHALF   93 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT--E-EEECCSSCCSEECEECTTCS---EEEEEEECSTTSCCEEEE
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCC--C-cEeeecccccccccccCCCC---eEEEEeccCCCCcceEEE
Confidence            3568999999999999999887 999999998543  3 34455555 68999999853   67777665   5667777


Q ss_pred             ecCC--CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCC
Q 036510           85 KEGN--SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTA  162 (288)
Q Consensus        85 d~~~--~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~  162 (288)
                      .+..  .....   .+..+ ..+...+|+|++...++++++.++ +.+||+..+..   ..... ++.  .++.|+|++ 
T Consensus        94 ~~~~~~~g~~~---~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~---~~l~~-~~~--~~~~~spDG-  161 (582)
T 3o4h_A           94 KVNTSRPGEEQ---RLEAV-KPMRILSGVDTGEAVVFTGATEDR-VALYALDGGGL---RELAR-LPG--FGFVSDIRG-  161 (582)
T ss_dssp             EEETTSTTCCE---ECTTS-CSBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEE---EEEEE-ESS--CEEEEEEET-
T ss_pred             EEeccCCCccc---cccCC-CCceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcE---EEeec-CCC--ceEEECCCC-
Confidence            6543  22211   22222 234567888887556666666555 45999976522   12222 222  788999997 


Q ss_pred             CCceecccccCCCceeEEeecC----CcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCC--c
Q 036510          163 PGALVGSGFLDPVQKLCSGGCD----NTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG--K  236 (288)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~--~  236 (288)
                                   +.+++++.|    ..|.+||+.++.     ...+..|...+.+++||||+    ++|+++..|+  .
T Consensus       162 -------------~~la~~~~~~~~~~~i~~~d~~~g~-----~~~l~~~~~~~~~~~~SpDG----~~l~~~~~~~~~~  219 (582)
T 3o4h_A          162 -------------DLIAGLGFFGGGRVSLFTSNLSSGG-----LRVFDSGEGSFSSASISPGM----KVTAGLETAREAR  219 (582)
T ss_dssp             -------------TEEEEEEEEETTEEEEEEEETTTCC-----CEEECCSSCEEEEEEECTTS----CEEEEEECSSCEE
T ss_pred             -------------CEEEEEEEcCCCCeEEEEEcCCCCC-----ceEeecCCCccccceECCCC----CEEEEccCCCeeE
Confidence                         678877766    679999987763     22456788889999999984    6788888888  8


Q ss_pred             EEEEEeecCCCcccceEeeccccCeEEEE--------eecCCCEEEEEeCCCcEEEeEc
Q 036510          237 VIIWTVAREGDQWEGKVLHDFKTPVYRVS--------WSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       237 i~iw~~~~~~~~~~~~~~~~~~~~i~~~~--------~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      |++||+.... .   ..+..+...+..++        |+|||+++++++.|++++||++
T Consensus       220 i~~~d~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          220 LVTVDPRDGS-V---EDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             EEEECTTTCC-E---EECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             EEEEcCCCCc-E---EEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            9999876432 1   24444444455555        9999999999999999999974

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.86  E-value=1.4e-20  Score=178.29  Aligned_cols=239  Identities=10%  Similarity=0.118  Sum_probs=164.2

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCce
Q 036510           13 TVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEW   92 (288)
Q Consensus        13 ~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~   92 (288)
                      .|.+++|||||++|++++. +.|++||+..+....+..+..|...+..++|+|+  |++|++++. +.|.+||+.++.. 
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPD--G~~la~~~~-~~i~~~d~~~g~~-  184 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPK--GGFVSFIRG-RNLWVIDLASGRQ-  184 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTT--SSEEEEEET-TEEEEEETTTTEE-
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCC--CCEEEEEeC-CcEEEEecCCCCE-
Confidence            4788999999999999887 8999999865410134556778888999999975  899998875 6999999876431 


Q ss_pred             EEeEEeecCCCc----------------eeEEEeccCCCCeEEEEEeCCC------------------------------
Q 036510           93 IKDHVFEDHKSS----------------VNSIDWAPHELGLCLACGSSDG------------------------------  126 (288)
Q Consensus        93 ~~~~~~~~h~~~----------------v~~l~~~p~~~~~~l~sg~~d~------------------------------  126 (288)
                        ......+...                +.++.|+|+  +..+++++.|+                              
T Consensus       185 --~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpD--g~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~  260 (741)
T 2ecf_A          185 --MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPD--DSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDAN  260 (741)
T ss_dssp             --EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTT--SSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCC
T ss_pred             --EEeccCCccceeccccceeeeeccccccceEECCC--CCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCC
Confidence              1222222221                478999998  55667776554                              


Q ss_pred             ---cEEEEeecC-CCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeec-----CCcEEEEEEeCCce
Q 036510          127 ---NISVFTARA-DGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC-----DNTVKVWKLYNGIW  197 (288)
Q Consensus       127 ---~i~i~d~~~-~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~~~~~  197 (288)
                         .|++||+.. +.. ........|...+.++.| |++              +.|+.++.     +..|.+||+.++..
T Consensus       261 ~~~~l~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~-pDg--------------~~l~~~~~~~~~~~~~i~~~d~~~g~~  324 (741)
T 2ecf_A          261 VQVKLGVISPAEQAQT-QWIDLGKEQDIYLARVNW-RDP--------------QHLSFQRQSRDQKKLDLVEVTLASNQQ  324 (741)
T ss_dssp             CEEEEEEECSSTTCCC-EEECCCSCSSEEEEEEEE-EET--------------TEEEEEEEETTSSEEEEEEEETTTCCE
T ss_pred             CeeEEEEEECCCCCce-EEecCCCCcceEEEEEEe-CCC--------------CEEEEEEecccCCeEEEEEEECCCCce
Confidence               788888876 432 111111146667899999 987              55554432     56799999877632


Q ss_pred             eeeeeeccccCCc----ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEE-EeecCCCE
Q 036510          198 KMDCFPALQMHTD----WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRV-SWSLTGNI  272 (288)
Q Consensus       198 ~~~~~~~~~~h~~----~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~-~~spdg~~  272 (288)
                          ...+..+..    .+.++.|+|++    +++++++.|+.++||.+.....   ...+..+...+..+ .|+|||+.
T Consensus       325 ----~~~~~~~~~~~~~~~~~~~~spdg----~~~~~~~~~g~~~l~~~~~~~~---~~~l~~~~~~v~~~~~~s~dg~~  393 (741)
T 2ecf_A          325 ----RVLAHETSPTWVPLHNSLRFLDDG----SILWSSERTGFQHLYRIDSKGK---AAALTHGNWSVDELLAVDEKAGL  393 (741)
T ss_dssp             ----EEEEEEECSSCCCCCSCCEECTTS----CEEEEECTTSSCEEEEECSSSC---EEESCCSSSCEEEEEEEETTTTE
T ss_pred             ----EEEEEcCCCCcCCcCCceEECCCC----eEEEEecCCCccEEEEEcCCCC---eeeeeecceEEEeEeEEeCCCCE
Confidence                222223322    34688999984    5788899999999998764322   23444555667777 69999998


Q ss_pred             EEEEeC-CC--cEEEeEc
Q 036510          273 LAVADG-NN--NVTLWEE  287 (288)
Q Consensus       273 l~s~~~-d~--~v~~w~~  287 (288)
                      |+..+. ++  +++||++
T Consensus       394 l~~~~~~~~~~~~~l~~~  411 (741)
T 2ecf_A          394 AYFRAGIESARESQIYAV  411 (741)
T ss_dssp             EEEEECSSCTTCBEEEEE
T ss_pred             EEEEEeCCCCceEEEEEE
Confidence            765544 44  8999984

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.86  E-value=6.2e-21  Score=180.09  Aligned_cols=242  Identities=11%  Similarity=0.060  Sum_probs=158.8

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEecccc---CeEEEEecCCCCCCEEEEeeCC---------C
Q 036510           12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKG---AVWEVAWAHPKFGSILASCSFD---------G   79 (288)
Q Consensus        12 ~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~l~s~s~d---------~   79 (288)
                      ..+.+++|+|||+++++ +.|++|++||+..+  +....+.+|..   .|..++||++  |++|++++.+         +
T Consensus        17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g--~~~~~~~~~~~~~~~v~~~~~SpD--g~~l~~~~~~~~~~~~~~~~   91 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETN--TSTVLIEGKKIESLRAIRYEISPD--REYALFSYNVEPIYQHSYTG   91 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGC--CCEEEECTTTTTTTTCSEEEECTT--SSEEEEEESCCCCSSSCCCS
T ss_pred             ccccccEEcCCCcEEEE-eCCCCEEEEECCCC--cEEEEeccccccccccceEEECCC--CCEEEEEecCccceeeccee
Confidence            34677899999997766 78999999998644  44555666665   4899999975  8999999875         7


Q ss_pred             cEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCC---------
Q 036510           80 TVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV---------  150 (288)
Q Consensus        80 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~---------  150 (288)
                      .+.+||+.++.. ........|...+..++|+|+  +..++.++. +.|++|++..+....   ....+..         
T Consensus        92 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPd--G~~la~~~~-~~i~~~~~~~g~~~~---~~~~~~~~~~~~g~~~  164 (723)
T 1xfd_A           92 YYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPK--GQQLIFIFE-NNIYYCAHVGKQAIR---VVSTGKEGVIYNGLSD  164 (723)
T ss_dssp             EEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSS--TTCEEEEET-TEEEEESSSSSCCEE---EECCCBTTTEEEEECC
T ss_pred             eEEEEECCCCce-EeccCCccccccccccEECCC--CCEEEEEEC-CeEEEEECCCCceEE---EecCCCCCceECcccc
Confidence            788999977653 111222245555899999998  556777765 789999987654322   2222222         


Q ss_pred             ---------CeeEEEeCCCCCCCceecccccCCCceeEEeecCC----------------------------------cE
Q 036510          151 ---------GVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDN----------------------------------TV  187 (288)
Q Consensus       151 ---------~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~----------------------------------~i  187 (288)
                               .+.++.|+|++              +.|+.++.|+                                  .|
T Consensus       165 ~v~~ee~~~~~~~~~~SpDg--------------~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l  230 (723)
T 1xfd_A          165 WLYEEEILKTHIAHWWSPDG--------------TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL  230 (723)
T ss_dssp             HHHHHTTSSSSEEEEECTTS--------------SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred             eeEEEEeccCcceEEECCCC--------------CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence                     23789999998              4455544332                                  78


Q ss_pred             EEEEEeCCceeeee--eeccccCCcceEEEEecCCCCCCCcEEEEEeC----CCcEEEEEeecCCCcccceEeec-cccC
Q 036510          188 KVWKLYNGIWKMDC--FPALQMHTDWVRDVAWAPNLGLPKSTIASASE----DGKVIIWTVAREGDQWEGKVLHD-FKTP  260 (288)
Q Consensus       188 ~iwd~~~~~~~~~~--~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~----D~~i~iw~~~~~~~~~~~~~~~~-~~~~  260 (288)
                      ++||+.++......  ...+..|...+.++.|+||+    ++|++.+.    +..|++||+...+.   ...... +...
T Consensus       231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg----~~l~~~~~~~~~~~~i~~~d~~~g~~---~~~~~~~~~~~  303 (723)
T 1xfd_A          231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATST----KVAVTWLNRAQNVSILTLCDATTGVC---TKKHEDESEAW  303 (723)
T ss_dssp             EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSS----EEEEEEEETTSCEEEEEEEETTTCCE---EEEEEEECSSC
T ss_pred             EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCC----eEEEEEEcCCCCeEEEEEEeCCCCcc---eEEEEeccCCE
Confidence            89998775311111  01122346789999999984    56766643    35799999764321   122222 2233


Q ss_pred             e----EEEEeecCCCEEEEE--eCCC------cEEEeE
Q 036510          261 V----YRVSWSLTGNILAVA--DGNN------NVTLWE  286 (288)
Q Consensus       261 i----~~~~~spdg~~l~s~--~~d~------~v~~w~  286 (288)
                      +    ..++|||||+.|+..  ..++      .|.+||
T Consensus       304 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d  341 (723)
T 1xfd_A          304 LHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS  341 (723)
T ss_dssp             CCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred             EeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence            3    378999999987754  4566      455565

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.86  E-value=1.1e-18  Score=149.30  Aligned_cols=239  Identities=10%  Similarity=0.041  Sum_probs=156.2

Q ss_pred             EEcCCCCE-EEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEE-eeCCCcEEEeecCCCCceEEe
Q 036510           18 AMDYYGKR-LATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILAS-CSFDGTVIIWKEGNSNEWIKD   95 (288)
Q Consensus        18 ~~s~~g~~-l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s-~s~d~~v~iwd~~~~~~~~~~   95 (288)
                      .|.+++++ +++++.+++|++||...+  +.+..+..+...+ .++|+++  +++++. +..++.|.+||..++..  ..
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~-~~~~s~d--g~~l~~~~~~~~~i~~~d~~~~~~--~~   76 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTL--EILNQITLGYDFV-DTAITSD--CSNVVVTSDFCQTLVQIETQLEPP--KV   76 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTC--CEEEEEECCCCEE-EEEECSS--SCEEEEEESTTCEEEEEECSSSSC--EE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCccc--ceeeeEEccCCcc-eEEEcCC--CCEEEEEeCCCCeEEEEECCCCce--eE
Confidence            45665544 788888999999998543  4555666666666 9999865  665554 44589999999976653  13


Q ss_pred             EEeecCCCceeEEEeccCCCCeEEEEEeCC-C--cEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceeccccc
Q 036510           96 HVFEDHKSSVNSIDWAPHELGLCLACGSSD-G--NISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFL  172 (288)
Q Consensus        96 ~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d-~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~  172 (288)
                      ..+..+..+..+++|+|+  +.+++++..+ +  .|.+||+..+...   .... +......+.|+|++.          
T Consensus        77 ~~~~~~~~~~~~~~~s~d--g~~l~~~~~~~~~~~i~v~d~~~~~~~---~~~~-~~~~~~~~~~spdg~----------  140 (331)
T 3u4y_A           77 VAIQEGQSSMADVDITPD--DQFAVTVTGLNHPFNMQSYSFLKNKFI---STIP-IPYDAVGIAISPNGN----------  140 (331)
T ss_dssp             EEEEECSSCCCCEEECTT--SSEEEECCCSSSSCEEEEEETTTTEEE---EEEE-CCTTEEEEEECTTSS----------
T ss_pred             EecccCCCCccceEECCC--CCEEEEecCCCCcccEEEEECCCCCeE---EEEE-CCCCccceEECCCCC----------
Confidence            445556666666999998  5555555444 3  8999998765322   1122 234568999999972          


Q ss_pred             CCCceeEEeecCCc-EEEEEEeCCceeeee-eeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCccc
Q 036510          173 DPVQKLCSGGCDNT-VKVWKLYNGIWKMDC-FPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWE  250 (288)
Q Consensus       173 ~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~-~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~  250 (288)
                         .++++...++. |.+|++......... ...+ .+......+.|+|++   ..+++++..++.|++||+........
T Consensus       141 ---~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg---~~l~v~~~~~~~v~v~d~~~~~~~~~  213 (331)
T 3u4y_A          141 ---GLILIDRSSANTVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDG---NFAFVANLIGNSIGILETQNPENITL  213 (331)
T ss_dssp             ---CEEEEEETTTTEEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTS---SEEEEEETTTTEEEEEECSSTTSCEE
T ss_pred             ---EEEEEecCCCceEEEEEECCCCcEeecCCccc-cCCCCccceEECCCC---CEEEEEeCCCCeEEEEECCCCcccce
Confidence               34556666688 999998753211111 1111 233447899999985   22456666799999999875432100


Q ss_pred             ceEeeccccCeEEEEeecCCCEEEEEe-CCCcEEEeEc
Q 036510          251 GKVLHDFKTPVYRVSWSLTGNILAVAD-GNNNVTLWEE  287 (288)
Q Consensus       251 ~~~~~~~~~~i~~~~~spdg~~l~s~~-~d~~v~~w~~  287 (288)
                      ...+. ....+..++|+|||+++++++ .++.|.+||.
T Consensus       214 ~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~  250 (331)
T 3u4y_A          214 LNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQ  250 (331)
T ss_dssp             EEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred             eeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence            12222 235678899999999776665 4788999985

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.85  E-value=1.4e-18  Score=149.46  Aligned_cols=244  Identities=7%  Similarity=-0.027  Sum_probs=161.8

Q ss_pred             cccceEEEEEcCCCCEEEEeeC-------CCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCC-EEEEeeCCCcE
Q 036510           10 HEDTVHDVAMDYYGKRLATASS-------DYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGS-ILASCSFDGTV   81 (288)
Q Consensus        10 h~~~v~~~~~s~~g~~l~s~~~-------d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s~d~~v   81 (288)
                      ....+..++|+|+|++|+.++.       ++.|.+||....  +.+..+.. ...+..++|+++  ++ ++++...++.|
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~--~~~~~~~~-~~~~~~~~~s~d--g~~l~v~~~~~~~v  113 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL--EVTQAIHN-DLKPFGATINNT--TQTLWFGNTVNSAV  113 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC--CEEEEEEE-SSCCCSEEEETT--TTEEEEEETTTTEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC--eEEEEEec-CCCcceEEECCC--CCEEEEEecCCCEE
Confidence            3456788999999998888774       567999987543  44555543 334678899865  66 56677778999


Q ss_pred             EEeecCCCCceEEeEEeecCCC---------ceeEEEeccCCCCeEEEEE-eCCCcEEEEeecCCCCeeeEEeeccCCCC
Q 036510           82 IIWKEGNSNEWIKDHVFEDHKS---------SVNSIDWAPHELGLCLACG-SSDGNISVFTARADGGWDTSRIDQAHPVG  151 (288)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~---------~v~~l~~~p~~~~~~l~sg-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  151 (288)
                      .+||..++..   ...+..+..         .+.++.|+|++ ..+++++ +.++.|.+||......   ......+...
T Consensus       114 ~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~  186 (353)
T 3vgz_A          114 TAIDAKTGEV---KGRLVLDDRKRTEEVRPLQPRELVADDAT-NTVYISGIGKESVIWVVDGGNIKL---KTAIQNTGKM  186 (353)
T ss_dssp             EEEETTTCCE---EEEEESCCCCCCSSCCCCEEEEEEEETTT-TEEEEEEESSSCEEEEEETTTTEE---EEEECCCCTT
T ss_pred             EEEeCCCCee---EEEEecCCCccccccCCCCCceEEECCCC-CEEEEEecCCCceEEEEcCCCCce---EEEecCCCCc
Confidence            9999977652   233433322         26889999984 3334444 4578999999876432   2222224445


Q ss_pred             eeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEE
Q 036510          152 VTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASA  231 (288)
Q Consensus       152 v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~  231 (288)
                      +..+.|+|++              +.++.++.++.|.+||+.++...........++...+.++.|+|++   ...+++.
T Consensus       187 ~~~~~~s~dg--------------~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg---~~l~~~~  249 (353)
T 3vgz_A          187 STGLALDSEG--------------KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTAR---QRAFITD  249 (353)
T ss_dssp             CCCCEEETTT--------------TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTT---TEEEEEE
T ss_pred             cceEEECCCC--------------CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCC---CEEEEEe
Confidence            6778888887              6677788899999999877632111111112355668899999985   2244444


Q ss_pred             eCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEe-CCCcEEEeEc
Q 036510          232 SEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVAD-GNNNVTLWEE  287 (288)
Q Consensus       232 s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~-~d~~v~~w~~  287 (288)
                      ..++.|.+||+...+.   ...+. ... ...++|+|||+++++++ .++.|.+||.
T Consensus       250 ~~~~~v~~~d~~~~~~---~~~~~-~~~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~  301 (353)
T 3vgz_A          250 SKAAEVLVVDTRNGNI---LAKVA-APE-SLAVLFNPARNEAYVTHRQAGKVSVIDA  301 (353)
T ss_dssp             SSSSEEEEEETTTCCE---EEEEE-CSS-CCCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCCCEEEEEECCCCcE---EEEEE-cCC-CceEEECCCCCEEEEEECCCCeEEEEEC
Confidence            5569999999865321   11111 122 25699999999766665 6899999995

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.85  E-value=2.8e-19  Score=168.47  Aligned_cols=246  Identities=14%  Similarity=0.140  Sum_probs=162.9

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCC-----CCceeeEEEeccccC--------------eEEEEecCCCCC
Q 036510            9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGN-----NTSQHLAKLSGHKGA--------------VWEVAWAHPKFG   69 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~-----~~~~~~~~~~~h~~~--------------v~~~~~~~~~~~   69 (288)
                      .|...+.+++|+|||++|+.+ .|+.|++|++..     +  +.......+...              +.++.|+++  |
T Consensus       118 ~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g--~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpD--g  192 (706)
T 2z3z_A          118 DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS--RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPK--G  192 (706)
T ss_dssp             CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC--CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTT--S
T ss_pred             CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC--CcEEeccCCCCCeEcccchhhhhcCCCceEEECCC--C
Confidence            456678889999999999984 789999999865     3  223223333332              478999875  8


Q ss_pred             CEEEEee---------------------------------CCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCC
Q 036510           70 SILASCS---------------------------------FDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELG  116 (288)
Q Consensus        70 ~~l~s~s---------------------------------~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~  116 (288)
                      ++|++++                                 .+..|.+||+.++.. ........|...+.+++|+|+  +
T Consensus       193 ~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~spd--g  269 (706)
T 2z3z_A          193 SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT-VYLQTGEPKEKFLTNLSWSPD--E  269 (706)
T ss_dssp             SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE-EECCCCSCTTCEEEEEEECTT--S
T ss_pred             CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce-EeeccCCCCceeEeeEEEECC--C
Confidence            9999888                                 457899999876542 111111246677999999998  5


Q ss_pred             eEEEEEeCCC-----cEEEEeecCCCCeeeEEeeccCCC---CeeEEEeCC--CCCCCceecccccCCCceeEEeecCCc
Q 036510          117 LCLACGSSDG-----NISVFTARADGGWDTSRIDQAHPV---GVTSVSWAP--STAPGALVGSGFLDPVQKLCSGGCDNT  186 (288)
Q Consensus       117 ~~l~sg~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~---~v~~i~~~p--~~~~~~~~~~~~~~~~~~l~s~~~d~~  186 (288)
                      ..+++++.++     .|.+||+.++....... ...+..   .+..+.|+|  ++              +++++++.|+.
T Consensus       270 ~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~~sp~~dg--------------~~l~~~~~~g~  334 (706)
T 2z3z_A          270 NILYVAEVNRAQNECKVNAYDAETGRFVRTLF-VETDKHYVEPLHPLTFLPGSNN--------------QFIWQSRRDGW  334 (706)
T ss_dssp             SEEEEEEECTTSCEEEEEEEETTTCCEEEEEE-EEECSSCCCCCSCCEECTTCSS--------------EEEEEECTTSS
T ss_pred             CEEEEEEeCCCCCeeEEEEEECCCCceeeEEE-EccCCCeECccCCceeecCCCC--------------EEEEEEccCCc
Confidence            6667666665     89999987652222211 112221   245678998  76              67888899999


Q ss_pred             EEEEEEeCCceeeeeeeccccCCcceEE-EEecCCCCCCCcEEEEE-eCCC--cEEEEEeecCCCcccceEeeccccCeE
Q 036510          187 VKVWKLYNGIWKMDCFPALQMHTDWVRD-VAWAPNLGLPKSTIASA-SEDG--KVIIWTVAREGDQWEGKVLHDFKTPVY  262 (288)
Q Consensus       187 i~iwd~~~~~~~~~~~~~~~~h~~~V~~-v~~sp~~~~~~~~l~s~-s~D~--~i~iw~~~~~~~~~~~~~~~~~~~~i~  262 (288)
                      ++||++....   ..+..+..|...|.+ +.|+|++    +.|+.+ +.++  .++||.+......  ...+. +...+.
T Consensus       335 ~~l~~~~~~~---~~~~~l~~~~~~v~~~~~~spdg----~~l~~~~~~~~~~~~~l~~~d~~~~~--~~~l~-~~~~~~  404 (706)
T 2z3z_A          335 NHLYLYDTTG---RLIRQVTKGEWEVTNFAGFDPKG----TRLYFESTEASPLERHFYCIDIKGGK--TKDLT-PESGMH  404 (706)
T ss_dssp             CEEEEEETTS---CEEEECCCSSSCEEEEEEECTTS----SEEEEEESSSCTTCBEEEEEETTCCC--CEESC-CSSSEE
T ss_pred             cEEEEEECCC---CEEEecCCCCeEEEeeeEEcCCC----CEEEEEecCCCCceEEEEEEEcCCCC--ceecc-CCCceE
Confidence            9999987321   233455667777776 7999985    455544 4454  3555554432211  12222 345688


Q ss_pred             EEEeecCCCEEEEEeCC----CcEEEeEc
Q 036510          263 RVSWSLTGNILAVADGN----NNVTLWEE  287 (288)
Q Consensus       263 ~~~~spdg~~l~s~~~d----~~v~~w~~  287 (288)
                      +++|||||++|+.+..+    +.|++||.
T Consensus       405 ~~~~spdg~~l~~~~~~~~~p~~i~l~d~  433 (706)
T 2z3z_A          405 RTQLSPDGSAIIDIFQSPTVPRKVTVTNI  433 (706)
T ss_dssp             EEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred             EEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence            99999999998877544    45999985

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.85  E-value=1.7e-19  Score=170.24  Aligned_cols=252  Identities=11%  Similarity=0.076  Sum_probs=157.2

Q ss_pred             ccccccc---ceEEEEEcCCCCEEEEeeCC---------CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEE
Q 036510            6 IETGHED---TVHDVAMDYYGKRLATASSD---------YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILA   73 (288)
Q Consensus         6 ~~~~h~~---~v~~~~~s~~g~~l~s~~~d---------~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~   73 (288)
                      ++.+|..   .|.+++|||||++|++++.+         +.+++||+..+....+....+|...+..++|||+  |+.|+
T Consensus        52 ~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPd--G~~la  129 (723)
T 1xfd_A           52 LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPK--GQQLI  129 (723)
T ss_dssp             EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSS--TTCEE
T ss_pred             EeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCC--CCEEE
Confidence            3345544   48999999999999999875         6788999865433233333455556888999975  88999


Q ss_pred             EeeCCCcEEEeecCCCCceEEeEEeecCCCc------------------eeEEEeccCCCCeEEEEEeCCC---------
Q 036510           74 SCSFDGTVIIWKEGNSNEWIKDHVFEDHKSS------------------VNSIDWAPHELGLCLACGSSDG---------  126 (288)
Q Consensus        74 s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~------------------v~~l~~~p~~~~~~l~sg~~d~---------  126 (288)
                      +++. +.|++|++..+...   .....+...                  +.+++|+|+  +..|++++.|+         
T Consensus       130 ~~~~-~~i~~~~~~~g~~~---~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpD--g~~la~~~~~~~~~~~~~~~  203 (723)
T 1xfd_A          130 FIFE-NNIYYCAHVGKQAI---RVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPD--GTRLAYAAINDSRVPIMELP  203 (723)
T ss_dssp             EEET-TEEEEESSSSSCCE---EEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTT--SSEEEEEEEECTTSCEEEEC
T ss_pred             EEEC-CeEEEEECCCCceE---EEecCCCCCceECcccceeEEEEeccCcceEEECCC--CCEEEEEEECCCccceEEee
Confidence            9887 79999998765431   222222322                  378999998  56667665442         


Q ss_pred             -------------------------cEEEEeecCCCCeeeEEe---eccCCCCeeEEEeCCCCCCCceecccccCCCcee
Q 036510          127 -------------------------NISVFTARADGGWDTSRI---DQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKL  178 (288)
Q Consensus       127 -------------------------~i~i~d~~~~~~~~~~~~---~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l  178 (288)
                                               .|++||+..+........   ...+...+.++.|+|++              +++
T Consensus       204 ~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg--------------~~l  269 (723)
T 1xfd_A          204 TYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATST--------------KVA  269 (723)
T ss_dssp             CCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSS--------------EEE
T ss_pred             ccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCC--------------eEE
Confidence                                     788888876532111110   01124568899999987              556


Q ss_pred             EEeec----CCcEEEEEEeCCceeeeeeecc-ccCCcceE----EEEecCCCCCCCcEEEE--EeCCC----c--EEEEE
Q 036510          179 CSGGC----DNTVKVWKLYNGIWKMDCFPAL-QMHTDWVR----DVAWAPNLGLPKSTIAS--ASEDG----K--VIIWT  241 (288)
Q Consensus       179 ~s~~~----d~~i~iwd~~~~~~~~~~~~~~-~~h~~~V~----~v~~sp~~~~~~~~l~s--~s~D~----~--i~iw~  241 (288)
                      ++.+.    +..|.+||+.++..    ...+ ..+..++.    .+.|+|++    ++|+.  ...|+    .  |.+||
T Consensus       270 ~~~~~~~~~~~~i~~~d~~~g~~----~~~~~~~~~~~~~~~~~~~~~spdg----~~l~~~~~~~~~~~~~~~~l~~~d  341 (723)
T 1xfd_A          270 VTWLNRAQNVSILTLCDATTGVC----TKKHEDESEAWLHRQNEEPVFSKDG----RKFFFIRAIPQGGRGKFYHITVSS  341 (723)
T ss_dssp             EEEEETTSCEEEEEEEETTTCCE----EEEEEEECSSCCCCCCCCCEECTTS----CSEEEEEEECCSSSSCEEEEEEEC
T ss_pred             EEEEcCCCCeEEEEEEeCCCCcc----eEEEEeccCCEEeccCCCceEcCCC----CeEEEEEecccCCCcceeEEEEEe
Confidence            55432    35689999877632    1222 22344443    78999985    44554  45677    4  55555


Q ss_pred             eecCCCcccceEeeccccCeEE-EEeecCCCEEEEEeCC---CcEEEeEc
Q 036510          242 VAREGDQWEGKVLHDFKTPVYR-VSWSLTGNILAVADGN---NNVTLWEE  287 (288)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~i~~-~~~spdg~~l~s~~~d---~~v~~w~~  287 (288)
                      +...+.......+......+.. ++|+|||+.|+..+.+   +.++||++
T Consensus       342 ~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~  391 (723)
T 1xfd_A          342 SQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSA  391 (723)
T ss_dssp             SSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEE
T ss_pred             ccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEE
Confidence            2121110001222222233444 6999999999877665   78999985

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.84  E-value=3.3e-18  Score=149.06  Aligned_cols=251  Identities=11%  Similarity=0.086  Sum_probs=157.3

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccc--cCeEEEEecCCCCCCE--EEEee-----------
Q 036510           12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHK--GAVWEVAWAHPKFGSI--LASCS-----------   76 (288)
Q Consensus        12 ~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~--l~s~s-----------   76 (288)
                      ..+..++|+|+|++|++++.+ +|.+|+++. .++...... |.  +....++|+++  |+.  +++++           
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~-~g~~~~~~~-~~~~g~~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~  114 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKS-PTEIVHEAS-HPIGGHPRANDADTN--TRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEE-TTEEEEEEE-EECCSSGGGGCTTSC--CEEEEEEECSSTTCCEEEEEE
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECC-CCCEEEeeE-eecCCCCccEEECCC--CCEEEEEEecCCcceecccee
Confidence            356789999999999999988 999999851 223332221 11  23455788764  773  45553           


Q ss_pred             --CCCcEEEeecCCCCceE-EeEEee-cCCCceeEEEeccCCCCeEEEEEe-CCCcEEEEeecCCCCeeeEEeec--cCC
Q 036510           77 --FDGTVIIWKEGNSNEWI-KDHVFE-DHKSSVNSIDWAPHELGLCLACGS-SDGNISVFTARADGGWDTSRIDQ--AHP  149 (288)
Q Consensus        77 --~d~~v~iwd~~~~~~~~-~~~~~~-~h~~~v~~l~~~p~~~~~~l~sg~-~d~~i~i~d~~~~~~~~~~~~~~--~~~  149 (288)
                        .++++.+|++....... ....+. .+...+.+++|+|+  ++++++++ .++.|++|++...+.........  .|.
T Consensus       115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spd--G~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g  192 (365)
T 1jof_A          115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPT--ETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG  192 (365)
T ss_dssp             SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTT--SSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred             ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCC--CCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence              68999999986422221 111111 24567899999998  45455544 46799999997222222222222  235


Q ss_pred             CCeeEEEeCCCCCCCceecccccCCCceeEEee-cCCcEEEEEEeC--Ccee--eeeeecc----ccCCc------ceEE
Q 036510          150 VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGG-CDNTVKVWKLYN--GIWK--MDCFPAL----QMHTD------WVRD  214 (288)
Q Consensus       150 ~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~--~~~~--~~~~~~~----~~h~~------~V~~  214 (288)
                      ..+..+.|+|++              ++++.++ .++.|.+|++..  +...  ...+..+    .+|..      .+..
T Consensus       193 ~~p~~~~~spdg--------------~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  258 (365)
T 1jof_A          193 DHPRWVAMHPTG--------------NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRAD  258 (365)
T ss_dssp             CCEEEEEECTTS--------------SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEE
T ss_pred             CCCCEeEECCCC--------------CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccccccc
Confidence            568899999997              5565555 478999999863  3211  1112222    23332      5889


Q ss_pred             EE-ecCCCCCCCcEEEEEeC-CC-----cEEEEEeecCCCcccce-EeeccccCeEEEEeec---CCCEEEEEeCC-CcE
Q 036510          215 VA-WAPNLGLPKSTIASASE-DG-----KVIIWTVAREGDQWEGK-VLHDFKTPVYRVSWSL---TGNILAVADGN-NNV  282 (288)
Q Consensus       215 v~-~sp~~~~~~~~l~s~s~-D~-----~i~iw~~~~~~~~~~~~-~~~~~~~~i~~~~~sp---dg~~l~s~~~d-~~v  282 (288)
                      +. |+|++    ++|++++. ++     +|++|++...+...... ....+...+..++|+|   ||++|++++.+ ++|
T Consensus       259 i~~~spdG----~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v  334 (365)
T 1jof_A          259 VCALTFSG----KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWL  334 (365)
T ss_dssp             EEEECTTS----SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEE
T ss_pred             EEEECCCC----CEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeE
Confidence            99 99985    56655553 33     89999986322111100 1222334466789999   89999999875 899


Q ss_pred             EEeEc
Q 036510          283 TLWEE  287 (288)
Q Consensus       283 ~~w~~  287 (288)
                      +||++
T Consensus       335 ~v~~~  339 (365)
T 1jof_A          335 EIYRW  339 (365)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99985

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.84  E-value=1.7e-19  Score=177.19  Aligned_cols=235  Identities=10%  Similarity=0.029  Sum_probs=176.5

Q ss_pred             cccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEec-----------cccCeEEEEec-CCCCCCEEEEe
Q 036510            8 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSG-----------HKGAVWEVAWA-HPKFGSILASC   75 (288)
Q Consensus         8 ~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~-----------h~~~v~~~~~~-~~~~~~~l~s~   75 (288)
                      .+|. .+...+|+|+|++|+.+ .++.|++|+...   ..+..+.+           |...+..++|+ ++  |+.|+++
T Consensus       242 ~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~---~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pd--G~~la~~  314 (1045)
T 1k32_A          242 TSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDT---EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLD--GDLIAFV  314 (1045)
T ss_dssp             CCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTT---CCEEECCCCCCCBCCSEEEECGGGGEEEEEECG--GGCEEEE
T ss_pred             cCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCc---eEeeeeccCcccccccccccccccceeeecCCC--CCEEEEE
Confidence            3444 35667999999988887 488999998732   22334444           44578899998 75  8888888


Q ss_pred             eCCCcEEEeecCCCCceEEeEEeecCCC-ceeEEEeccCCCCeEEEEEeCCCcEE-EEeecCCCCeeeEEeeccCCCCee
Q 036510           76 SFDGTVIIWKEGNSNEWIKDHVFEDHKS-SVNSIDWAPHELGLCLACGSSDGNIS-VFTARADGGWDTSRIDQAHPVGVT  153 (288)
Q Consensus        76 s~d~~v~iwd~~~~~~~~~~~~~~~h~~-~v~~l~~~p~~~~~~l~sg~~d~~i~-i~d~~~~~~~~~~~~~~~~~~~v~  153 (288)
                      + ++.+.+|+...+.    ...+..|.. .+..++|+ +  +..++.++.++.+. +|++..+. .   .....|...+.
T Consensus       315 ~-~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~s-d--g~~l~~~s~~~~l~~~~d~~~~~-~---~~l~~~~~~~~  382 (1045)
T 1k32_A          315 S-RGQAFIQDVSGTY----VLKVPEPLRIRYVRRGGD-T--KVAFIHGTREGDFLGIYDYRTGK-A---EKFEENLGNVF  382 (1045)
T ss_dssp             E-TTEEEEECTTSSB----EEECSCCSCEEEEEECSS-S--EEEEEEEETTEEEEEEEETTTCC-E---EECCCCCCSEE
T ss_pred             E-cCEEEEEcCCCCc----eEEccCCCcceEEeeeEc-C--CCeEEEEECCCceEEEEECCCCC-c---eEecCCcccee
Confidence            7 7899999986543    223556777 89999999 6  66777777788888 88876532 1   22236777899


Q ss_pred             EEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeC
Q 036510          154 SVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE  233 (288)
Q Consensus       154 ~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~  233 (288)
                      .+.|+|++              +.|++++.++.|++||+.++.    ....+.+|...|.++.|+|++    ++|++++.
T Consensus       383 ~~~~SpDG--------------~~la~~~~~~~v~~~d~~tg~----~~~~~~~~~~~v~~~~~SpDG----~~la~~~~  440 (1045)
T 1k32_A          383 AMGVDRNG--------------KFAVVANDRFEIMTVDLETGK----PTVIERSREAMITDFTISDNS----RFIAYGFP  440 (1045)
T ss_dssp             EEEECTTS--------------SEEEEEETTSEEEEEETTTCC----EEEEEECSSSCCCCEEECTTS----CEEEEEEE
T ss_pred             eeEECCCC--------------CEEEEECCCCeEEEEECCCCc----eEEeccCCCCCccceEECCCC----CeEEEEec
Confidence            99999997              789999999999999998763    223345788889999999984    67888876


Q ss_pred             CC----------cEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          234 DG----------KVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       234 D~----------~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ++          .|++||+....    ...+..+...+..++|+|||++|+.++.++..++|+.
T Consensus       441 ~~~~~~~~~~~~~i~l~d~~~g~----~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~  500 (1045)
T 1k32_A          441 LKHGETDGYVMQAIHVYDMEGRK----IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR  500 (1045)
T ss_dssp             ECSSTTCSCCEEEEEEEETTTTE----EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred             CccccccCCCCCeEEEEECCCCc----EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcch
Confidence            54          89999986421    2334455667889999999999999999888888863

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.84  E-value=4.3e-19  Score=152.42  Aligned_cols=235  Identities=11%  Similarity=0.065  Sum_probs=153.0

Q ss_pred             EEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccc-cCeEEEEecCCCCCC-EEEEeeCCCcEEEeecCCCCceE
Q 036510           16 DVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHK-GAVWEVAWAHPKFGS-ILASCSFDGTVIIWKEGNSNEWI   93 (288)
Q Consensus        16 ~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~-~l~s~s~d~~v~iwd~~~~~~~~   93 (288)
                      +++++++++++++++.+++|++||...  ++.+..+..+. ..+..++|+++  ++ ++++...++.|.+||+.++.   
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~s~d--g~~~~v~~~~~~~i~~~d~~t~~---   76 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVAS--DTVYKSCVMPDKFGPGTAMMAPD--NRTAYVLNNHYGDIYGIDLDTCK---   76 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTT--TEEEEEEECSSCCSSCEEEECTT--SSEEEEEETTTTEEEEEETTTTE---
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCC--CcEEEEEecCCCCCCceeEECCC--CCEEEEEeCCCCcEEEEeCCCCc---
Confidence            356788889999999999999999854  35566665443 24678999865  66 45666789999999987654   


Q ss_pred             EeEEeecC------CCceeEEEeccCCCCeEEEEEeCC------------CcEEEEeecCCCCeeeEEeeccCCCCeeEE
Q 036510           94 KDHVFEDH------KSSVNSIDWAPHELGLCLACGSSD------------GNISVFTARADGGWDTSRIDQAHPVGVTSV  155 (288)
Q Consensus        94 ~~~~~~~h------~~~v~~l~~~p~~~~~~l~sg~~d------------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i  155 (288)
                      ....+..+      ...+.+++|+|+  +.++++++.+            +.|.+||+.++......... .++..+.++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~  153 (349)
T 1jmx_B           77 NTFHANLSSVPGEVGRSMYSFAISPD--GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLM  153 (349)
T ss_dssp             EEEEEESCCSTTEEEECSSCEEECTT--SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCE
T ss_pred             EEEEEEcccccccccccccceEECCC--CCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec-cCCCcccce
Confidence            22233322      223788999998  5566666654            89999998763211111111 234468888


Q ss_pred             EeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeec-------------------------------
Q 036510          156 SWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPA-------------------------------  204 (288)
Q Consensus       156 ~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------------------------------  204 (288)
                      .|+|++              + ++.++  +.|.+||+.++.........                               
T Consensus       154 ~~s~dg--------------~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (349)
T 1jmx_B          154 RAADDG--------------S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI  216 (349)
T ss_dssp             EECTTS--------------C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEE
T ss_pred             eECCCC--------------c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeee
Confidence            999987              4 33333  33888887655311110000                               


Q ss_pred             ---------------------------------cccCCcceEEEEecC-CCCCCCcEEEEEeCCCcEEEEEeecCCCccc
Q 036510          205 ---------------------------------LQMHTDWVRDVAWAP-NLGLPKSTIASASEDGKVIIWTVAREGDQWE  250 (288)
Q Consensus       205 ---------------------------------~~~h~~~V~~v~~sp-~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~  250 (288)
                                                       +..+...+.++.|+| ++    ++++++  ++.|.+||+...+   .
T Consensus       217 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg----~~l~~~--~~~v~~~d~~~~~---~  287 (349)
T 1jmx_B          217 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP----NQIYGV--LNRLAKYDLKQRK---L  287 (349)
T ss_dssp             EEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT----TEEEEE--ESEEEEEETTTTE---E
T ss_pred             eecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCC----CEEEEE--cCeEEEEECccCe---E
Confidence                                             000112355677888 74    566666  8899999986431   1


Q ss_pred             ceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          251 GKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       251 ~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ...+ .....+..++|+|||++|++++.++.|++||.
T Consensus       288 ~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~  323 (349)
T 1jmx_B          288 IKAA-NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNP  323 (349)
T ss_dssp             EEEE-ECSSCCCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred             EEEE-cCCCCccceEECCCCCEEEEecCCCeEEEEec
Confidence            1111 22345778999999999999888999999995

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.84  E-value=9.5e-18  Score=144.60  Aligned_cols=232  Identities=11%  Similarity=0.104  Sum_probs=148.8

Q ss_pred             CCCcEEEEEeCCCCceeeE-EEeccccCeEEEEecCCCCCCEEEEeeC--CCcEEEeecCCCCceEEeEEeecCCCceeE
Q 036510           31 SDYSIKIIGVGNNTSQHLA-KLSGHKGAVWEVAWAHPKFGSILASCSF--DGTVIIWKEGNSNEWIKDHVFEDHKSSVNS  107 (288)
Q Consensus        31 ~d~~i~lwd~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~l~s~s~--d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~  107 (288)
                      .++.+.+|.++..+++... ....+......++|+++  |++++++..  ++.|.+|++..+. ......+..+...+..
T Consensus        14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spd--g~l~~~~~~~~~~~v~~~~~~~g~-~~~~~~~~~~~~~p~~   90 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAK--DCLYSVDKEDDEGGIAAWQIDGQT-AHKLNTVVAPGTPPAY   90 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTT--CEEEEEEEETTEEEEEEEEEETTE-EEEEEEEEEESCCCSE
T ss_pred             CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccC--CeEEEEEecCCCceEEEEEecCCc-EEEeeeeecCCCCCEE
Confidence            4567899988754444322 33445566778999875  664444432  7999999995543 2233334446678899


Q ss_pred             EEeccCCCCeEEEEEe-CCCcEEEEeecCCCCeeeEEeecc---------CCCCeeEEEeCCCCCCCceecccccCCCce
Q 036510          108 IDWAPHELGLCLACGS-SDGNISVFTARADGGWDTSRIDQA---------HPVGVTSVSWAPSTAPGALVGSGFLDPVQK  177 (288)
Q Consensus       108 l~~~p~~~~~~l~sg~-~d~~i~i~d~~~~~~~~~~~~~~~---------~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~  177 (288)
                      ++|+|+  +.++++++ .++.|.+|++...+..........         +...+.++.|+|++              ++
T Consensus        91 ~a~spd--g~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg--------------~l  154 (347)
T 3hfq_A           91 VAVDEA--RQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN--------------RL  154 (347)
T ss_dssp             EEEETT--TTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS--------------CE
T ss_pred             EEECCC--CCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC--------------cE
Confidence            999998  45555555 789999999975443332222111         11247789999987              56


Q ss_pred             eEEeecCCcEEEEEEe-CCceeeeeeeccccC-CcceEEEEecCCCCCCCc-EEEEEeCCCcEEEEEeecCCCcc-cceE
Q 036510          178 LCSGGCDNTVKVWKLY-NGIWKMDCFPALQMH-TDWVRDVAWAPNLGLPKS-TIASASEDGKVIIWTVAREGDQW-EGKV  253 (288)
Q Consensus       178 l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~h-~~~V~~v~~sp~~~~~~~-~l~s~s~D~~i~iw~~~~~~~~~-~~~~  253 (288)
                      +++...++.|.+||+. ++.  +.....+..+ ......+.|+|++    + ++++...++.|++|++....... ....
T Consensus       155 ~v~~~~~~~v~~~~~~~~g~--~~~~~~~~~~~g~~p~~~~~spdg----~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~  228 (347)
T 3hfq_A          155 AVIDLGSDKVYVYNVSDAGQ--LSEQSVLTMEAGFGPRHLVFSPDG----QYAFLAGELSSQIASLKYDTQTGAFTQLGI  228 (347)
T ss_dssp             EEEETTTTEEEEEEECTTSC--EEEEEEEECCTTCCEEEEEECTTS----SEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred             EEEeCCCCEEEEEEECCCCc--EEEeeeEEcCCCCCCceEEECCCC----CEEEEEeCCCCEEEEEEecCCCCceEEeee
Confidence            6777778899999998 332  1222222222 2246789999985    4 45556678999999987522111 1111


Q ss_pred             eeccc------cCeEEEEeecCCCEEE-EEeCCCcEEEeEc
Q 036510          254 LHDFK------TPVYRVSWSLTGNILA-VADGNNNVTLWEE  287 (288)
Q Consensus       254 ~~~~~------~~i~~~~~spdg~~l~-s~~~d~~v~~w~~  287 (288)
                      +....      ..+..++|+|||++|+ +...+++|.+|++
T Consensus       229 ~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~  269 (347)
T 3hfq_A          229 VKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAV  269 (347)
T ss_dssp             EESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEE
T ss_pred             eeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEE
Confidence            12111      3478899999999874 4556899999995

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.84  E-value=4.6e-19  Score=167.06  Aligned_cols=233  Identities=13%  Similarity=0.132  Sum_probs=157.9

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCC---
Q 036510           12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN---   88 (288)
Q Consensus        12 ~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~---   88 (288)
                      ..|.+++|+|| ++++.+ .|+++++||+..+  + ...+..|...+..++|+|+  |+.|+++ .|+.|++|++.+   
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~--~-~~~l~~~~~~~~~~~~Spd--G~~la~~-~~~~i~v~~~~~~~~  153 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLAR--K-VTYLFDTNEETASLDFSPV--GDRVAYV-RNHNLYIARGGKLGE  153 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTT--E-EEEEECCTTCCTTCEECTT--SSEEEEE-ETTEEEEEECBCTTS
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCC--c-eEEccCCcccccCCcCCCC--CCEEEEE-ECCeEEEEecCcccc
Confidence            56899999999 555544 4699999998543  2 3445567777888999875  8888884 689999999976   


Q ss_pred             --CCceEEeEEeecCCCc--------------eeEEEeccCCCCeEEEEEe-----------------------------
Q 036510           89 --SNEWIKDHVFEDHKSS--------------VNSIDWAPHELGLCLACGS-----------------------------  123 (288)
Q Consensus        89 --~~~~~~~~~~~~h~~~--------------v~~l~~~p~~~~~~l~sg~-----------------------------  123 (288)
                        +..   ......+...              +.++.|+|+  +..+++++                             
T Consensus       154 ~~g~~---~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpD--g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~  228 (706)
T 2z3z_A          154 GMSRA---IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPK--GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMA  228 (706)
T ss_dssp             CCCCC---EESCSCCBTTEEESSCCGGGCTTCCCSEEECTT--SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBT
T ss_pred             cCCCc---EEeccCCCCCeEcccchhhhhcCCCceEEECCC--CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCC
Confidence              542   1112222222              589999998  56677776                             


Q ss_pred             ----CCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCC-----cEEEEEEeC
Q 036510          124 ----SDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDN-----TVKVWKLYN  194 (288)
Q Consensus       124 ----~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~  194 (288)
                          .+..|++||+..+.. ........|...+.++.|+|++              +.|++++.++     .|.+||+.+
T Consensus       229 g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~spdg--------------~~l~~~~~~~~~~~~~v~~~d~~~  293 (706)
T 2z3z_A          229 GTPSHHVTVGIYHLATGKT-VYLQTGEPKEKFLTNLSWSPDE--------------NILYVAEVNRAQNECKVNAYDAET  293 (706)
T ss_dssp             TSCCCEEEEEEEETTTTEE-EECCCCSCTTCEEEEEEECTTS--------------SEEEEEEECTTSCEEEEEEEETTT
T ss_pred             CCCCCeeEEEEEECCCCce-EeeccCCCCceeEeeEEEECCC--------------CEEEEEEeCCCCCeeEEEEEECCC
Confidence                446799999875421 1111112456678999999997              6677777665     899999877


Q ss_pred             CceeeeeeeccccCCc---ceEEEEecC--CCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEE-EEeec
Q 036510          195 GIWKMDCFPALQMHTD---WVRDVAWAP--NLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYR-VSWSL  268 (288)
Q Consensus       195 ~~~~~~~~~~~~~h~~---~V~~v~~sp--~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~-~~~sp  268 (288)
                      +..... +.. ..+..   .+.++.|+|  ++    ++|++++.|+.+++|.+.....  ....+..+...+.. ++|+|
T Consensus       294 g~~~~~-~~~-~~~~~~~~~~~~~~~sp~~dg----~~l~~~~~~g~~~l~~~~~~~~--~~~~l~~~~~~v~~~~~~sp  365 (706)
T 2z3z_A          294 GRFVRT-LFV-ETDKHYVEPLHPLTFLPGSNN----QFIWQSRRDGWNHLYLYDTTGR--LIRQVTKGEWEVTNFAGFDP  365 (706)
T ss_dssp             CCEEEE-EEE-EECSSCCCCCSCCEECTTCSS----EEEEEECTTSSCEEEEEETTSC--EEEECCCSSSCEEEEEEECT
T ss_pred             CceeeE-EEE-ccCCCeECccCCceeecCCCC----EEEEEEccCCccEEEEEECCCC--EEEecCCCCeEEEeeeEEcC
Confidence            621111 111 12222   246789999  74    6888899999999999873221  12334444556766 79999


Q ss_pred             CCCEEEEEeCCC
Q 036510          269 TGNILAVADGNN  280 (288)
Q Consensus       269 dg~~l~s~~~d~  280 (288)
                      ||+.|+.++.++
T Consensus       366 dg~~l~~~~~~~  377 (706)
T 2z3z_A          366 KGTRLYFESTEA  377 (706)
T ss_dssp             TSSEEEEEESSS
T ss_pred             CCCEEEEEecCC
Confidence            999887766543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.82  E-value=9.5e-18  Score=144.30  Aligned_cols=233  Identities=12%  Similarity=0.116  Sum_probs=154.8

Q ss_pred             cceEEEEEcCCCCEE-EEeeCCCcEEEEEeCCCCceeeEEEeccccC---------eEEEEecCCCCCCEEEEee--CCC
Q 036510           12 DTVHDVAMDYYGKRL-ATASSDYSIKIIGVGNNTSQHLAKLSGHKGA---------VWEVAWAHPKFGSILASCS--FDG   79 (288)
Q Consensus        12 ~~v~~~~~s~~g~~l-~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~---------v~~~~~~~~~~~~~l~s~s--~d~   79 (288)
                      ..+..++|+|+|+++ ++...++.|.+||....  +.+..+..+...         +.+++|+++  ++.++.++  .++
T Consensus        89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d--g~~l~~~~~~~~~  164 (353)
T 3vgz_A           89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTG--EVKGRLVLDDRKRTEEVRPLQPRELVADDA--TNTVYISGIGKES  164 (353)
T ss_dssp             SCCCSEEEETTTTEEEEEETTTTEEEEEETTTC--CEEEEEESCCCCCCSSCCCCEEEEEEEETT--TTEEEEEEESSSC
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEeCCCC--eeEEEEecCCCccccccCCCCCceEEECCC--CCEEEEEecCCCc
Confidence            345678899999855 55556799999998543  455556554322         688999865  66555544  589


Q ss_pred             cEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEe-eccCCCCeeEEEeC
Q 036510           80 TVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRI-DQAHPVGVTSVSWA  158 (288)
Q Consensus        80 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~v~~i~~~  158 (288)
                      .|.+||..+..   ....+..+...+.++.|+|+  +..+++++.++.|.+||..++........ ..++...+..+.|+
T Consensus       165 ~i~~~d~~~~~---~~~~~~~~~~~~~~~~~s~d--g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s  239 (353)
T 3vgz_A          165 VIWVVDGGNIK---LKTAIQNTGKMSTGLALDSE--GKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLD  239 (353)
T ss_dssp             EEEEEETTTTE---EEEEECCCCTTCCCCEEETT--TTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEE
T ss_pred             eEEEEcCCCCc---eEEEecCCCCccceEEECCC--CCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEEC
Confidence            99999987654   33445445556889999998  55677778899999999876532222111 11244457789999


Q ss_pred             CCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEE
Q 036510          159 PSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVI  238 (288)
Q Consensus       159 p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~  238 (288)
                      |++.             .++++...++.|.+||..++.    .+..+..+..  ..+.|+|++   ...+++...++.|.
T Consensus       240 ~dg~-------------~l~~~~~~~~~v~~~d~~~~~----~~~~~~~~~~--~~~~~s~dg---~~l~v~~~~~~~v~  297 (353)
T 3vgz_A          240 TARQ-------------RAFITDSKAAEVLVVDTRNGN----ILAKVAAPES--LAVLFNPAR---NEAYVTHRQAGKVS  297 (353)
T ss_dssp             TTTT-------------EEEEEESSSSEEEEEETTTCC----EEEEEECSSC--CCEEEETTT---TEEEEEETTTTEEE
T ss_pred             CCCC-------------EEEEEeCCCCEEEEEECCCCc----EEEEEEcCCC--ceEEECCCC---CEEEEEECCCCeEE
Confidence            9872             344455556899999987763    2222222221  568999985   23556666799999


Q ss_pred             EEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCC
Q 036510          239 IWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGN  279 (288)
Q Consensus       239 iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d  279 (288)
                      +||+...+   ....+ .....+..++|+|||++|+++..+
T Consensus       298 ~~d~~~~~---~~~~~-~~~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          298 VIDAKSYK---VVKTF-DTPTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             EEETTTTE---EEEEE-ECCSEEEEEEECTTSCEEEEEEEC
T ss_pred             EEECCCCe---EEEEE-ecCCCCCeEEEcCCCCEEEEEEcc
Confidence            99986431   11122 223467899999999987777654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.82  E-value=6.5e-18  Score=144.15  Aligned_cols=225  Identities=12%  Similarity=0.118  Sum_probs=144.7

Q ss_pred             CEEEEeeCCCcEEEEEeCCCCceeeEEEeccc-c-CeEEEEecCCCCCC-EEEEeeCCCcEEEeecCCCCceEEeEEeec
Q 036510           24 KRLATASSDYSIKIIGVGNNTSQHLAKLSGHK-G-AVWEVAWAHPKFGS-ILASCSFDGTVIIWKEGNSNEWIKDHVFED  100 (288)
Q Consensus        24 ~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~-~-~v~~~~~~~~~~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~  100 (288)
                      ++|++++.+++|++||...  ++.+..+.... . .+..++|+++  ++ ++++++.++.|.+||+.++..   ...+..
T Consensus         2 ~~~v~~~~~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~~s~d--g~~l~v~~~~~~~v~~~d~~~~~~---~~~~~~   74 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEK--MAVDKVITIADAGPTPMVPMVAPG--GRIAYATVNKSESLVKIDLVTGET---LGRIDL   74 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT--TEEEEEEECTTCTTCCCCEEECTT--SSEEEEEETTTTEEEEEETTTCCE---EEEEEC
T ss_pred             cEEEEcCCCCeEEEEECCC--CcEEEEEEcCCCCCCccceEEcCC--CCEEEEEeCCCCeEEEEECCCCCe---EeeEEc
Confidence            4789999999999999854  35565555322 1 4778999865  65 456777889999999876552   222321


Q ss_pred             -C----CCceeEEEeccCCCCeEEEEEe------------CCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCC
Q 036510          101 -H----KSSVNSIDWAPHELGLCLACGS------------SDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAP  163 (288)
Q Consensus       101 -h----~~~v~~l~~~p~~~~~~l~sg~------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~  163 (288)
                       +    ...+.+++|+|+  +..+++++            .++.|.+||+..+...   .... ....+..+.|+|++. 
T Consensus        75 ~~~~~~~~~~~~~~~s~d--g~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~---~~~~-~~~~~~~~~~s~dg~-  147 (337)
T 1pby_B           75 STPEERVKSLFGAALSPD--GKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR---KAFE-APRQITMLAWARDGS-  147 (337)
T ss_dssp             CBTTEEEECTTCEEECTT--SSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE---EEEE-CCSSCCCEEECTTSS-
T ss_pred             CCcccccccccceEECCC--CCEEEEEecccccccccccccCceEEEEECCCCcEE---EEEe-CCCCcceeEECCCCC-
Confidence             1    125778999998  44555554            5799999998754321   1111 234567788999873 


Q ss_pred             CceecccccCCCceeEEeecCCcEEEEEEeCCceee--------------------------------------------
Q 036510          164 GALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKM--------------------------------------------  199 (288)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--------------------------------------------  199 (288)
                                   +|+.+  ++.|.+||+.++....                                            
T Consensus       148 -------------~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~  212 (337)
T 1pby_B          148 -------------KLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPA  212 (337)
T ss_dssp             -------------CEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTT
T ss_pred             -------------EEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccc
Confidence                         23332  3445555443321000                                            


Q ss_pred             -----------------ee-eeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCe
Q 036510          200 -----------------DC-FPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPV  261 (288)
Q Consensus       200 -----------------~~-~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i  261 (288)
                                       +. ...+..+...+.++.|+|++    ++++++  |+.|++||+...+   ....+ .....+
T Consensus       213 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg----~~l~~~--~~~v~~~d~~~~~---~~~~~-~~~~~~  282 (337)
T 1pby_B          213 DPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK----TRAFGA--YNVLESFDLEKNA---SIKRV-PLPHSY  282 (337)
T ss_dssp             SGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTS----SEEEEE--ESEEEEEETTTTE---EEEEE-ECSSCC
T ss_pred             cccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCC----CEEEEe--CCeEEEEECCCCc---Cccee-cCCCce
Confidence                             00 11122344456789999984    567666  7899999986431   11121 223467


Q ss_pred             EEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          262 YRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       262 ~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      .+++|+|||++|++++.++.|++||.
T Consensus       283 ~~~~~s~dg~~l~~~~~~~~i~v~d~  308 (337)
T 1pby_B          283 YSVNVSTDGSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             CEEEECTTSCEEEEESBSSEEEEEET
T ss_pred             eeEEECCCCCEEEEEcCCCcEEEEEC
Confidence            89999999999999999999999995

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.81  E-value=5.7e-18  Score=166.43  Aligned_cols=241  Identities=7%  Similarity=-0.011  Sum_probs=170.3

Q ss_pred             cccccc-ceEEEEEcCCCCEEEEeeCCCcEE-EEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510            7 ETGHED-TVHDVAMDYYGKRLATASSDYSIK-IIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW   84 (288)
Q Consensus         7 ~~~h~~-~v~~~~~s~~g~~l~s~~~d~~i~-lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw   84 (288)
                      +..|.. .+..++|+ +|+.|+.++.+..+. +|++....   ...+.+|...+..++|+++  |++|++++.++.+++|
T Consensus       332 ~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~---~~~l~~~~~~~~~~~~SpD--G~~la~~~~~~~v~~~  405 (1045)
T 1k32_A          332 VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK---AEKFEENLGNVFAMGVDRN--GKFAVVANDRFEIMTV  405 (1045)
T ss_dssp             CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC---EEECCCCCCSEEEEEECTT--SSEEEEEETTSEEEEE
T ss_pred             ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC---ceEecCCccceeeeEECCC--CCEEEEECCCCeEEEE
Confidence            345666 88999999 999999999888787 88875432   3344588889999999875  8999999999999999


Q ss_pred             ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC----------CcEEEEeecCCCCeeeEEeeccCCCCeeE
Q 036510           85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD----------GNISVFTARADGGWDTSRIDQAHPVGVTS  154 (288)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d----------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~  154 (288)
                      |+.++.   ....+..|...+.+++|+|+  +.++++++.+          +.|++||+..+.    ......|...+..
T Consensus       406 d~~tg~---~~~~~~~~~~~v~~~~~SpD--G~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~----~~~l~~~~~~~~~  476 (1045)
T 1k32_A          406 DLETGK---PTVIERSREAMITDFTISDN--SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK----IFAATTENSHDYA  476 (1045)
T ss_dssp             ETTTCC---EEEEEECSSSCCCCEEECTT--SCEEEEEEEECSSTTCSCCEEEEEEEETTTTE----EEECSCSSSBEEE
T ss_pred             ECCCCc---eEEeccCCCCCccceEECCC--CCeEEEEecCccccccCCCCCeEEEEECCCCc----EEEeeCCCcccCC
Confidence            997765   23344578889999999998  5666666554          489999987542    2344567777889


Q ss_pred             EEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCce------------------e------------------
Q 036510          155 VSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIW------------------K------------------  198 (288)
Q Consensus       155 i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------------------~------------------  198 (288)
                      +.|+|++              +.|+.++.++..++|+......                  .                  
T Consensus       477 ~~~spdG--------------~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  542 (1045)
T 1k32_A          477 PAFDADS--------------KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDL  542 (1045)
T ss_dssp             EEECTTS--------------CEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCC
T ss_pred             ceEcCCC--------------CEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccc
Confidence            9999997              5677777766666665321100                  0                  


Q ss_pred             ---eeeeeccccCCcceEEEEecCCCCCCCcEEEE-----------EeC--CCcEEEEEeecCCCcccceEeeccccCeE
Q 036510          199 ---MDCFPALQMHTDWVRDVAWAPNLGLPKSTIAS-----------ASE--DGKVIIWTVAREGDQWEGKVLHDFKTPVY  262 (288)
Q Consensus       199 ---~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s-----------~s~--D~~i~iw~~~~~~~~~~~~~~~~~~~~i~  262 (288)
                         ...+..+..|...+..+.++|++    .++++           .+.  +..|.+||+....    ...+.   ..+.
T Consensus       543 ~g~~~~~~~l~~~~~~~~~~~~s~dg----~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~----~~~l~---~~v~  611 (1045)
T 1k32_A          543 NDMYKRSSPINVDPGDYRMIIPLESS----ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK----VTEVK---NNLT  611 (1045)
T ss_dssp             TTGGGGCEECSCCCBCEEEEEECSSE----EEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC----EEEEE---EEEE
T ss_pred             cCHhHceEEcCCCCCChhheEEcCCC----eEEEEecccCcccccccccCCCceEEEEECCCCc----EEEee---cCcc
Confidence               00111233466778999999974    55664           123  3456666654321    12222   5688


Q ss_pred             EEEeecCCCEEEEEeCCCcEEEeEcC
Q 036510          263 RVSWSLTGNILAVADGNNNVTLWEEA  288 (288)
Q Consensus       263 ~~~~spdg~~l~s~~~d~~v~~w~~~  288 (288)
                      +++|||||++|++++.+ .|++||++
T Consensus       612 ~~~~S~DG~~l~~~~~~-~i~~~d~~  636 (1045)
T 1k32_A          612 DLRLSADRKTVMVRKDD-GKIYTFPL  636 (1045)
T ss_dssp             EEEECTTSCEEEEEETT-SCEEEEES
T ss_pred             eEEECCCCCEEEEEcCC-cEEEEeCc
Confidence            99999999999999876 89999963

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.80  E-value=3.7e-18  Score=157.59  Aligned_cols=230  Identities=9%  Similarity=0.030  Sum_probs=157.8

Q ss_pred             ccccceEEEEEcCCCCEEEEeeC---CCcEEEEEeCC-CCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510            9 GHEDTVHDVAMDYYGKRLATASS---DYSIKIIGVGN-NTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW   84 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l~s~~~---d~~i~lwd~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw   84 (288)
                      ++...|..+.|+|| +++++++.   +...+||.++. ..+... .+..+. .+...+|+++.++.++++++.|+.. +|
T Consensus        62 ~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~-l~  137 (582)
T 3o4h_A           62 EPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVA-LY  137 (582)
T ss_dssp             SCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEE-EE
T ss_pred             ccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCce-EE
Confidence            34468999999999 78887775   56677876643 011112 332222 2335577765444466666666655 99


Q ss_pred             ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC----CcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCC
Q 036510           85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD----GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPS  160 (288)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~  160 (288)
                      |+.++..   . .+..+..  .++.|+||  ++.+++++.+    +.|++||+..+..    +....|...+..+.|+|+
T Consensus       138 d~~~g~~---~-~l~~~~~--~~~~~spD--G~~la~~~~~~~~~~~i~~~d~~~g~~----~~l~~~~~~~~~~~~SpD  205 (582)
T 3o4h_A          138 ALDGGGL---R-ELARLPG--FGFVSDIR--GDLIAGLGFFGGGRVSLFTSNLSSGGL----RVFDSGEGSFSSASISPG  205 (582)
T ss_dssp             EEETTEE---E-EEEEESS--CEEEEEEE--TTEEEEEEEEETTEEEEEEEETTTCCC----EEECCSSCEEEEEEECTT
T ss_pred             EccCCcE---E-EeecCCC--ceEEECCC--CCEEEEEEEcCCCCeEEEEEcCCCCCc----eEeecCCCccccceECCC
Confidence            9976531   2 2222222  88999998  6777777666    6799999876532    233567777899999999


Q ss_pred             CCCCceecccccCCCceeEEeecCC--cEEEEEEeCCceeeeeeeccccCCcceEEEE--------ecCCCCCCCcEEEE
Q 036510          161 TAPGALVGSGFLDPVQKLCSGGCDN--TVKVWKLYNGIWKMDCFPALQMHTDWVRDVA--------WAPNLGLPKSTIAS  230 (288)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~--------~sp~~~~~~~~l~s  230 (288)
                      +              +.|+++..++  .|.+||+.++.    .. .+.+|...+.++.        |+|++    .++++
T Consensus       206 G--------------~~l~~~~~~~~~~i~~~d~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~spdg----~~~~~  262 (582)
T 3o4h_A          206 M--------------KVTAGLETAREARLVTVDPRDGS----VE-DLELPSKDFSSYRPTAITWLGYLPDG----RLAVV  262 (582)
T ss_dssp             S--------------CEEEEEECSSCEEEEEECTTTCC----EE-ECCCSCSHHHHHCCSEEEEEEECTTS----CEEEE
T ss_pred             C--------------CEEEEccCCCeeEEEEEcCCCCc----EE-EccCCCcChhhhhhccccceeEcCCC----cEEEE
Confidence            8              6788888888  89999987763    22 4566777777777        99984    68899


Q ss_pred             EeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCc---EEEeE
Q 036510          231 ASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNN---VTLWE  286 (288)
Q Consensus       231 ~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~---v~~w~  286 (288)
                      ++.|+++++|++  .      +......+.+.+++|+ ||+.+++++.+.+   +.+|+
T Consensus       263 ~~~~g~~~l~~~--g------~~~~~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d  312 (582)
T 3o4h_A          263 ARREGRSAVFID--G------ERVEAPQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP  312 (582)
T ss_dssp             EEETTEEEEEET--T------EEECCCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred             EEcCCcEEEEEE--C------CeeccCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence            999999999997  1      1112334578899999 9999999888754   55554

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.79  E-value=3.7e-18  Score=161.20  Aligned_cols=235  Identities=11%  Similarity=0.057  Sum_probs=150.5

Q ss_pred             EEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEecccc---CeEEEEecCCCCCCEEEEeeC---------CCcEEE
Q 036510           16 DVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKG---AVWEVAWAHPKFGSILASCSF---------DGTVII   83 (288)
Q Consensus        16 ~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~l~s~s~---------d~~v~i   83 (288)
                      +++|+|+|+++++ +.|++|++||+..+  +....+.+|..   .+..++||++  |++|++++.         |+++++
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~SpD--g~~la~~~~~~~~~~~s~~~~i~~   94 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETG--QSYTILSNRTMKSVNASNYGLSPD--RQFVYLESDYSKLWRYSYTATYYI   94 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSC--CEEEEECHHHHHTTTCSEEEECTT--SSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCC--cEEEEEccccccccceeeEEECCC--CCeEEEEecCceeEEeecceEEEE
Confidence            6789999965554 56999999998654  34444555544   3889999975  899998876         799999


Q ss_pred             eecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCC------------
Q 036510           84 WKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVG------------  151 (288)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~------------  151 (288)
                      ||+.++... ....+   ...+..++|+|+  +..++.+. ++.|++|++..+.....  ...++...            
T Consensus        95 ~d~~~g~~~-~~~~l---~~~~~~~~~SPD--G~~la~~~-~~~i~~~~~~~g~~~~l--~~~~~~~~v~~g~~~~v~~e  165 (719)
T 1z68_A           95 YDLSNGEFV-RGNEL---PRPIQYLCWSPV--GSKLAYVY-QNNIYLKQRPGDPPFQI--TFNGRENKIFNGIPDWVYEE  165 (719)
T ss_dssp             EETTTTEEC-CSSCC---CSSBCCEEECSS--TTCEEEEE-TTEEEEESSTTSCCEEC--CCCCBTTTEEESSCCHHHHH
T ss_pred             EECCCCccc-cceec---CcccccceECCC--CCEEEEEE-CCeEEEEeCCCCCcEEE--ecCCCcCCeEcccccceeee
Confidence            998765420 00112   246889999999  55667664 78999999876543211  11122221            


Q ss_pred             -----eeEEEeCCCCCCCceecccccCCCceeEEeecCC----------------------------------cEEEEEE
Q 036510          152 -----VTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDN----------------------------------TVKVWKL  192 (288)
Q Consensus       152 -----v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~----------------------------------~i~iwd~  192 (288)
                           ..++.|+|++              +.|+.++.|.                                  .|++||+
T Consensus       166 e~~~~~~~~~wSPDG--------------~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~  231 (719)
T 1z68_A          166 EMLATKYALWWSPNG--------------KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDT  231 (719)
T ss_dssp             HTTCSSCCEEECTTS--------------SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEES
T ss_pred             ecccCcccEEECCCC--------------CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEEC
Confidence                 2489999998              5666665542                                  6889998


Q ss_pred             eCCce----eeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeC--CC--cEEEEE----eecCCCcccceEe----ec
Q 036510          193 YNGIW----KMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE--DG--KVIIWT----VAREGDQWEGKVL----HD  256 (288)
Q Consensus       193 ~~~~~----~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~--D~--~i~iw~----~~~~~~~~~~~~~----~~  256 (288)
                      .++..    .+.....+.+|...+.++.|+||+    +++++...  ++  .|.+||    +....  . ..+.    ..
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~----~~~~~~~~~~~~~~~l~~~d~~~~~~~g~--~-~~~~~~~~~~  304 (719)
T 1z68_A          232 TYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE----RVCLQWLKRVQNVSVLSICDFREDWQTWD--C-PKTQEHIEES  304 (719)
T ss_dssp             SCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS----EEEEEEEESSTTEEEEEEEEECSSSSSEE--C-CGGGEEEEEC
T ss_pred             CCCCccceeEccCCccCCCCcceEEEeEEeCCC----eEEEEEeccccCeEEEEEEcccCCCCCCc--e-EEEEeccccc
Confidence            76531    111112345788899999999983    45655432  22  377787    43221  1 1112    23


Q ss_pred             cccCeE-----EEEeecCCCEEEE--EeCCCcEEEe
Q 036510          257 FKTPVY-----RVSWSLTGNILAV--ADGNNNVTLW  285 (288)
Q Consensus       257 ~~~~i~-----~~~~spdg~~l~s--~~~d~~v~~w  285 (288)
                      +...+.     .+.|+|||+.|+.  +..++..+||
T Consensus       305 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~  340 (719)
T 1z68_A          305 RTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIH  340 (719)
T ss_dssp             SSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEE
T ss_pred             CCceEccccCCccEECCCCCeEEEEEEccCCceEEE
Confidence            445555     7899999996654  4455654444

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.77  E-value=1.1e-15  Score=132.40  Aligned_cols=241  Identities=11%  Similarity=0.014  Sum_probs=149.5

Q ss_pred             CCCEEEEeeC----CCcEEEEEeCCCCce--eeEEEeccccCeEEEEecCCCCCCEEEEeeCC----CcEEEeecCCC-C
Q 036510           22 YGKRLATASS----DYSIKIIGVGNNTSQ--HLAKLSGHKGAVWEVAWAHPKFGSILASCSFD----GTVIIWKEGNS-N   90 (288)
Q Consensus        22 ~g~~l~s~~~----d~~i~lwd~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d----~~v~iwd~~~~-~   90 (288)
                      ...+++.|++    ++.|.+|.++...++  .+...  |......++|+++  +++|++++.+    +.+.+|++... .
T Consensus        12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spd--g~~l~~~~~~~~~~~~v~~~~~~~~~g   87 (361)
T 3scy_A           12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSAD--GKFVYSVNEFSKDQAAVSAFAFDKEKG   87 (361)
T ss_dssp             GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTT--SSEEEEEECCSSTTCEEEEEEEETTTT
T ss_pred             CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCC--CCEEEEEEccCCCCCcEEEEEEeCCCC
Confidence            3445666643    578999988644333  23333  6677788999865  8888888876    89999988653 3


Q ss_pred             ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEE---eecc--------CCCCeeEEEeCC
Q 036510           91 EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSR---IDQA--------HPVGVTSVSWAP  159 (288)
Q Consensus        91 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~---~~~~--------~~~~v~~i~~~p  159 (288)
                      ..........+......+++  ++ ..++++...++.|.+|++...+......   ...+        +...+.++.|+|
T Consensus        88 ~~~~~~~~~~~~~~p~~~~~--dg-~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp  164 (361)
T 3scy_A           88 TLHLLNTQKTMGADPCYLTT--NG-KNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP  164 (361)
T ss_dssp             EEEEEEEEECSSSCEEEEEE--CS-SEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT
T ss_pred             cEEEeeEeccCCCCcEEEEE--CC-CEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC
Confidence            33233334444556677777  42 3444555578899999997543322111   1111        122357899999


Q ss_pred             CCCCCceecccccCCCceeEEeecCCcEEEEEEeCCce----e-eee----eeccccCCcceEEEEecCCCCCCCcEEEE
Q 036510          160 STAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIW----K-MDC----FPALQMHTDWVRDVAWAPNLGLPKSTIAS  230 (288)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----~-~~~----~~~~~~h~~~V~~v~~sp~~~~~~~~l~s  230 (288)
                      ++.             .+++++..++.|.+|++.....    . +..    ......+......+.|+|++    ++++.
T Consensus       165 dg~-------------~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg----~~l~v  227 (361)
T 3scy_A          165 DGK-------------YLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDG----KFAYL  227 (361)
T ss_dssp             TSS-------------EEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTS----SEEEE
T ss_pred             CCC-------------EEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCC----CEEEE
Confidence            872             2455666688999999975421    1 110    01112233457899999985    55655


Q ss_pred             Ee-CCCcEEEEEeecCCCcccceEeec---cccCeEEEEeecCCCEEEEEeCC--CcEEEeEc
Q 036510          231 AS-EDGKVIIWTVAREGDQWEGKVLHD---FKTPVYRVSWSLTGNILAVADGN--NNVTLWEE  287 (288)
Q Consensus       231 ~s-~D~~i~iw~~~~~~~~~~~~~~~~---~~~~i~~~~~spdg~~l~s~~~d--~~v~~w~~  287 (288)
                      ++ .++.|.+|++.... ......+..   .......++|+|||++|+++..+  ++|++|++
T Consensus       228 ~~~~~~~v~v~~~~~g~-~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~  289 (361)
T 3scy_A          228 INEIGGTVIAFRYADGM-LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKV  289 (361)
T ss_dssp             EETTTCEEEEEEEETTE-EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEE
T ss_pred             EcCCCCeEEEEEecCCc-eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEE
Confidence            55 69999999987321 111111111   12346799999999998777654  89999985

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.77  E-value=3.1e-17  Score=155.75  Aligned_cols=256  Identities=11%  Similarity=0.050  Sum_probs=153.2

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccC-----eEEEEecCCCCCCEEEEeeCC--------
Q 036510           12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGA-----VWEVAWAHPKFGSILASCSFD--------   78 (288)
Q Consensus        12 ~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~~~l~s~s~d--------   78 (288)
                      .....++|+|||++|+++  |++|++|++..+  +....+.+|...     ...+.|||+  |++|+.++.+        
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Spd--g~~l~~~~~~~~~~r~~~   90 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYG--NSSVFLENSTFDEFGHSINDYSISPD--GQFILLEYNYVKQWRHSY   90 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTC--CEEEEECTTTTTTCCSCCCEEEECTT--SSEEEEEEEEEECSSSCE
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCC--ceEEEEechhhhhhcccccceEECCC--CCEEEEEECCeeeEEEcc
Confidence            345678999999988886  999999998644  445556777643     234778875  8999998887        


Q ss_pred             -CcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCC-------
Q 036510           79 -GTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV-------  150 (288)
Q Consensus        79 -~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~-------  150 (288)
                       +.+.+||+.++.    ...+..|...+...+|+||  +..+|.+ .++.|++|++..+......  ..++..       
T Consensus        91 ~~~~~~~d~~~~~----~~~l~~~~~~~~~~~~SPd--G~~la~~-~~~~i~~~~~~~~~~~~lt--~~g~~~~~~~g~~  161 (740)
T 4a5s_A           91 TASYDIYDLNKRQ----LITEERIPNNTQWVTWSPV--GHKLAYV-WNNDIYVKIEPNLPSYRIT--WTGKEDIIYNGIT  161 (740)
T ss_dssp             EEEEEEEETTTTE----ECCSSCCCTTEEEEEECSS--TTCEEEE-ETTEEEEESSTTSCCEECC--SCCBTTTEEESBC
T ss_pred             ceEEEEEECCCCc----EEEcccCCCcceeeEECCC--CCEEEEE-ECCeEEEEECCCCceEEEc--CCCCccceecCcc
Confidence             556699997654    2335567778999999999  5556666 4789999998765432211  112211       


Q ss_pred             ----------CeeEEEeCCCCCCCceecccccCCCce-e-------------------EEeecC--CcEEEEEEeC---C
Q 036510          151 ----------GVTSVSWAPSTAPGALVGSGFLDPVQK-L-------------------CSGGCD--NTVKVWKLYN---G  195 (288)
Q Consensus       151 ----------~v~~i~~~p~~~~~~~~~~~~~~~~~~-l-------------------~s~~~d--~~i~iwd~~~---~  195 (288)
                                ....+.|||++...+....+...-... +                   ..|..+  ..|++||+.+   +
T Consensus       162 ~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~  241 (740)
T 4a5s_A          162 DWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSV  241 (740)
T ss_dssp             CHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSS
T ss_pred             cccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCC
Confidence                      123588999984211111000000000 0                   001111  1477788776   5


Q ss_pred             c--eeeeee--eccccCCcceEEEEecCCCCCCCcEEEEEe----CCCcEEEEEeecCCC---cc-cceEe-eccccCeE
Q 036510          196 I--WKMDCF--PALQMHTDWVRDVAWAPNLGLPKSTIASAS----EDGKVIIWTVAREGD---QW-EGKVL-HDFKTPVY  262 (288)
Q Consensus       196 ~--~~~~~~--~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s----~D~~i~iw~~~~~~~---~~-~~~~~-~~~~~~i~  262 (288)
                      .  ...+..  ..+.+|...+..+.|+||+    +.++...    .+..|++||+.....   +. ....+ .++..+|.
T Consensus       242 ~~~~~~~l~~~~~~~~~~~~~~~~~wspdg----~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~  317 (740)
T 4a5s_A          242 TNATSIQITAPASMLIGDHYLCDVTWATQE----RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVG  317 (740)
T ss_dssp             SCCCEEEECCCHHHHTSCEEEEEEEEEETT----EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSS
T ss_pred             CcceEEEecCCccCCCCCeEEEEEEEeCCC----eEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEc
Confidence            1  111111  0122488889999999985    4455443    234799999876430   00 11111 22334443


Q ss_pred             -----EEEeecCCCEEE-EEeC-CC--cEEEeE
Q 036510          263 -----RVSWSLTGNILA-VADG-NN--NVTLWE  286 (288)
Q Consensus       263 -----~~~~spdg~~l~-s~~~-d~--~v~~w~  286 (288)
                           ...|+|||+.|+ ..+. +|  .|.+|+
T Consensus       318 ~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~  350 (740)
T 4a5s_A          318 RFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQ  350 (740)
T ss_dssp             SSSCCCCEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred             cCcCCCceEcCCCCEEEEEEEcCCCceEEEEEE
Confidence                 688999999877 6653 44  466665

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.76  E-value=1.7e-17  Score=156.62  Aligned_cols=238  Identities=12%  Similarity=0.164  Sum_probs=151.0

Q ss_pred             ceEEEEEcCCCCEEEEeeC---------CCcEEEEEeCCCCceee--EEEeccccCeEEEEecCCCCCCEEEEeeCCCcE
Q 036510           13 TVHDVAMDYYGKRLATASS---------DYSIKIIGVGNNTSQHL--AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTV   81 (288)
Q Consensus        13 ~v~~~~~s~~g~~l~s~~~---------d~~i~lwd~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v   81 (288)
                      .|.+++|||||++|+.++.         |+++++||+..+  +.+  ..+   ...+..++|||+  |+.|++++ |+.|
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g--~~~~~~~l---~~~~~~~~~SPD--G~~la~~~-~~~i  132 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG--EFVRGNEL---PRPIQYLCWSPV--GSKLAYVY-QNNI  132 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT--EECCSSCC---CSSBCCEEECSS--TTCEEEEE-TTEE
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC--ccccceec---CcccccceECCC--CCEEEEEE-CCeE
Confidence            3889999999999998876         789999998654  221  222   245788999975  88999886 7899


Q ss_pred             EEeecCCCCceEEeEEeecCCCce-----------------eEEEeccCCCCeEEEEEeCCC------------------
Q 036510           82 IIWKEGNSNEWIKDHVFEDHKSSV-----------------NSIDWAPHELGLCLACGSSDG------------------  126 (288)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~~v-----------------~~l~~~p~~~~~~l~sg~~d~------------------  126 (288)
                      ++|++.++...  ..+..++...|                 .+++|+||  +..|++++.|.                  
T Consensus       133 ~~~~~~~g~~~--~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPD--G~~la~~~~d~~~~~~~~~~~~~~~~~~~  208 (719)
T 1z68_A          133 YLKQRPGDPPF--QITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPN--GKFLAYAEFNDTDIPVIAYSYYGDEQYPR  208 (719)
T ss_dssp             EEESSTTSCCE--ECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTT--SSEEEEEEEECTTSCEEEEEECCSSSSCE
T ss_pred             EEEeCCCCCcE--EEecCCCcCCeEcccccceeeeecccCcccEEECCC--CCEEEEEEECCCCCceEEeeccCCCCCcc
Confidence            99998765431  11112222212                 58999998  66777776542                  


Q ss_pred             ----------------cEEEEeecCCCCe---eeE--EeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecC-
Q 036510          127 ----------------NISVFTARADGGW---DTS--RIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCD-  184 (288)
Q Consensus       127 ----------------~i~i~d~~~~~~~---~~~--~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d-  184 (288)
                                      .|++||+..+...   ...  ....+|...+.++.|+|++              +++++.... 
T Consensus       209 ~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~--------------~~~~~~~~~~  274 (719)
T 1z68_A          209 TINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE--------------RVCLQWLKRV  274 (719)
T ss_dssp             EEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS--------------EEEEEEEESS
T ss_pred             ceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCC--------------eEEEEEeccc
Confidence                            6778887654210   100  1123566778999999985              555553322 


Q ss_pred             -C--cEEEEE----EeCCceeeeeeecc----ccCCcceE-----EEEecCCCCCCCcEEE--EEeCCCcEEEEEeecCC
Q 036510          185 -N--TVKVWK----LYNGIWKMDCFPAL----QMHTDWVR-----DVAWAPNLGLPKSTIA--SASEDGKVIIWTVAREG  246 (288)
Q Consensus       185 -~--~i~iwd----~~~~~~~~~~~~~~----~~h~~~V~-----~v~~sp~~~~~~~~l~--s~s~D~~i~iw~~~~~~  246 (288)
                       +  .|.+||    ..++    ++...+    .+|..+|.     .+.|+|++    +.|+  +...++..+||-.....
T Consensus       275 ~~~~~l~~~d~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg----~~l~~~~~~~~g~~~l~~~~~~~  346 (719)
T 1z68_A          275 QNVSVLSICDFREDWQTW----DCPKTQEHIEESRTGWAGGFFVSTPVFSYDA----ISYYKIFSDKDGYKHIHYIKDTV  346 (719)
T ss_dssp             TTEEEEEEEEECSSSSSE----ECCGGGEEEEECSSSCSSSSSCCCCEECTTS----SCEEEEEECTTSCEEEEEESSCS
T ss_pred             cCeEEEEEEcccCCCCCC----ceEEEEecccccCCceEccccCCccEECCCC----CeEEEEEEccCCceEEEEEECCC
Confidence             2  377788    5443    223333    36777777     88999985    3333  44456654444333221


Q ss_pred             CcccceEeeccccCeEEEEeecCCCEEEEEeCC-----CcEEEeEc
Q 036510          247 DQWEGKVLHDFKTPVYRVSWSLTGNILAVADGN-----NNVTLWEE  287 (288)
Q Consensus       247 ~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d-----~~v~~w~~  287 (288)
                      ..  ...+......+..+.++ ||+.|+..+.+     +.++||++
T Consensus       347 ~~--~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~  389 (719)
T 1z68_A          347 EN--AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRI  389 (719)
T ss_dssp             TT--CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEE
T ss_pred             Cc--eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEE
Confidence            11  23333334457777778 88887777765     88999974

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.75  E-value=5.4e-15  Score=123.87  Aligned_cols=239  Identities=11%  Similarity=0.088  Sum_probs=162.1

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEe------ccccCeEEEEecCCCCCCEEEEeeC-CCcE
Q 036510            9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLS------GHKGAVWEVAWAHPKFGSILASCSF-DGTV   81 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~~~l~s~s~-d~~v   81 (288)
                      +|-....+++++++|+++++...++.|.+|+.+.   +.+..+.      +|...+..+++..+ ++.++++... ++.|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g---~~~~~~~~~~~~~~~~~~p~~i~~~~~-~g~l~v~~~~~~~~i  102 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG---RFKFQFGECGKRDSQLLYPNRVAVVRN-SGDIIVTERSPTHQI  102 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS---CEEEEECCBSSSTTCBSSEEEEEEETT-TTEEEEEECGGGCEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCCC---cEEEEecccCCCcccccCceEEEEEcC-CCeEEEEcCCCCCEE
Confidence            4556788999999999999888899999998753   3344442      34567889998432 3667776643 8999


Q ss_pred             EEeecCCCCceEEeEEee-cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCC
Q 036510           82 IIWKEGNSNEWIKDHVFE-DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPS  160 (288)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~  160 (288)
                      .+|+. ++.   ....+. .+...+.++++.|+  +.++++...++.|.+|+.. + ..........+...+..+.++|+
T Consensus       103 ~~~d~-~g~---~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~~-g-~~~~~~~~~~~~~~p~~i~~~~~  174 (286)
T 1q7f_A          103 QIYNQ-YGQ---FVRKFGATILQHPRGVTVDNK--GRIIVVECKVMRVIIFDQN-G-NVLHKFGCSKHLEFPNGVVVNDK  174 (286)
T ss_dssp             EEECT-TSC---EEEEECTTTCSCEEEEEECTT--SCEEEEETTTTEEEEECTT-S-CEEEEEECTTTCSSEEEEEECSS
T ss_pred             EEECC-CCc---EEEEecCccCCCceEEEEeCC--CCEEEEECCCCEEEEEcCC-C-CEEEEeCCCCccCCcEEEEECCC
Confidence            99984 443   223332 23456889999987  5667777778899999853 2 21111111133445788999887


Q ss_pred             CCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecc--ccCCcceEEEEecCCCCCCCcEEEEEeCCC-cE
Q 036510          161 TAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPAL--QMHTDWVRDVAWAPNLGLPKSTIASASEDG-KV  237 (288)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~-~i  237 (288)
                      +              +++++...++.|++||....     .+..+  .++......++++|++    .++++...++ .|
T Consensus       175 g--------------~l~v~~~~~~~i~~~~~~g~-----~~~~~~~~g~~~~p~~i~~d~~G----~l~v~~~~~~~~i  231 (286)
T 1q7f_A          175 Q--------------EIFISDNRAHCVKVFNYEGQ-----YLRQIGGEGITNYPIGVGINSNG----EILIADNHNNFNL  231 (286)
T ss_dssp             S--------------EEEEEEGGGTEEEEEETTCC-----EEEEESCTTTSCSEEEEEECTTC----CEEEEECSSSCEE
T ss_pred             C--------------CEEEEECCCCEEEEEcCCCC-----EEEEEccCCccCCCcEEEECCCC----CEEEEeCCCCEEE
Confidence            6              66777777899999996432     22223  2333567899999974    6788887776 99


Q ss_pred             EEEEeecCCCcccceEeecc--ccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          238 IIWTVAREGDQWEGKVLHDF--KTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       238 ~iw~~~~~~~~~~~~~~~~~--~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ++|+....  .  ...+..+  ...+.+++++|+|+++++ +.|++|++|+.
T Consensus       232 ~~~~~~g~--~--~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~  278 (286)
T 1q7f_A          232 TIFTQDGQ--L--ISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRY  278 (286)
T ss_dssp             EEECTTSC--E--EEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEEC
T ss_pred             EEECCCCC--E--EEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEc
Confidence            99985321  1  1222222  224789999999987766 67999999984

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.73  E-value=1.2e-14  Score=126.52  Aligned_cols=236  Identities=9%  Similarity=0.083  Sum_probs=145.8

Q ss_pred             EEEEeeCC--CcEEEEEeCCCCcee--eEEEe-ccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecC-CCCceEEeEEe
Q 036510           25 RLATASSD--YSIKIIGVGNNTSQH--LAKLS-GHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEG-NSNEWIKDHVF   98 (288)
Q Consensus        25 ~l~s~~~d--~~i~lwd~~~~~~~~--~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~-~~~~~~~~~~~   98 (288)
                      +|+.|++.  +.|.+|+++..+++.  +.... +....+..++|+++  +++|++++.+ .|.+|++. ++. .......
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spd--g~~l~~~~~~-~v~~~~~~~~g~-~~~~~~~   79 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHE--RKNIYGAAMK-KWSSFAVKSPTE-IVHEASH   79 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTT--SSEEEEEEBT-EEEEEEEEETTE-EEEEEEE
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCC--CCEEEEEccc-eEEEEEECCCCC-EEEeeEe
Confidence            35556653  568888775433332  22221 23346778999865  8888888888 99999986 443 2111112


Q ss_pred             ecCCCceeEEEeccCCCCe--EEEEEe-------------CCCcEEEEeecCCCCeeeE-Eee-ccCCCCeeEEEeCCCC
Q 036510           99 EDHKSSVNSIDWAPHELGL--CLACGS-------------SDGNISVFTARADGGWDTS-RID-QAHPVGVTSVSWAPST  161 (288)
Q Consensus        99 ~~h~~~v~~l~~~p~~~~~--~l~sg~-------------~d~~i~i~d~~~~~~~~~~-~~~-~~~~~~v~~i~~~p~~  161 (288)
                      ..+ +...+++|+|+  +.  ++++++             .++.+.+|++...+..... ... ..+...+..+.|+|++
T Consensus        80 ~~~-g~~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG  156 (365)
T 1jof_A           80 PIG-GHPRANDADTN--TRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE  156 (365)
T ss_dssp             ECC-SSGGGGCTTSC--CEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS
T ss_pred             ecC-CCCccEEECCC--CCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC
Confidence            212 23566889998  45  344443             6899999999754333211 111 1244568899999997


Q ss_pred             CCCceecccccCCCceeEEee-cCCcEEEEEEe-CCceeeeeeeccc--cCCcceEEEEecCCCCCCCcEEEEEe-CCCc
Q 036510          162 APGALVGSGFLDPVQKLCSGG-CDNTVKVWKLY-NGIWKMDCFPALQ--MHTDWVRDVAWAPNLGLPKSTIASAS-EDGK  236 (288)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~-~~~~~~~~~~~~~--~h~~~V~~v~~sp~~~~~~~~l~s~s-~D~~  236 (288)
                                    ++++++. .++.|++||+. ++..  ..+..+.  .|...+..+.|+|++    ++|++++ .+++
T Consensus       157 --------------~~l~~~~~~~~~v~~~~~~~~g~~--~~~~~~~~~~~g~~p~~~~~spdg----~~l~v~~~~~~~  216 (365)
T 1jof_A          157 --------------TYLYSADLTANKLWTHRKLASGEV--ELVGSVDAPDPGDHPRWVAMHPTG----NYLYALMEAGNR  216 (365)
T ss_dssp             --------------SEEEEEETTTTEEEEEEECTTSCE--EEEEEEECSSTTCCEEEEEECTTS----SEEEEEETTTTE
T ss_pred             --------------CEEEEEcCCCCEEEEEEECCCCCE--EEeeeEecCCCCCCCCEeEECCCC----CEEEEEECCCCe
Confidence                          5555443 46799999998 5532  2222232  234568999999984    5666666 4789


Q ss_pred             EEEEEeecCCCccc--ceEeecc-------cc------CeEEEE-eecCCCEEEEEeCC-C-----cEEEeEc
Q 036510          237 VIIWTVAREGDQWE--GKVLHDF-------KT------PVYRVS-WSLTGNILAVADGN-N-----NVTLWEE  287 (288)
Q Consensus       237 i~iw~~~~~~~~~~--~~~~~~~-------~~------~i~~~~-~spdg~~l~s~~~d-~-----~v~~w~~  287 (288)
                      |.+|++........  ...+...       ..      .+..++ |+|||++|++++.+ +     +|++|++
T Consensus       217 v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~  289 (365)
T 1jof_A          217 ICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKL  289 (365)
T ss_dssp             EEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred             EEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEE
Confidence            99998764211111  0111111       11      478899 99999998877643 2     8999985

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.72  E-value=5.6e-15  Score=126.76  Aligned_cols=247  Identities=12%  Similarity=0.064  Sum_probs=162.8

Q ss_pred             ccceEEEEEcCCCCEEEEeeCC------------------------CcEEEEEeCCCCceeeEEEe-ccccCeEEEEecC
Q 036510           11 EDTVHDVAMDYYGKRLATASSD------------------------YSIKIIGVGNNTSQHLAKLS-GHKGAVWEVAWAH   65 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d------------------------~~i~lwd~~~~~~~~~~~~~-~h~~~v~~~~~~~   65 (288)
                      -+.+.+|+++++|+++++.+.+                        ++|.+||...+  +.+..+. ++......+++++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~p~gia~d~  100 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA--EILQSSGKNLFYLPHGLSIDT  100 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC--CEEEEECTTTCSSEEEEEECT
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC--eEEeccCCCccCCceEEEECC
Confidence            4678999999999999988877                        47888887433  3444443 4556788999975


Q ss_pred             CCCCCEEEEeeCCCcEEEeecCCCCceEEeEEe---------ecCCCceeEEEeccCCCCeEEEEEe-CCCcEEEEeecC
Q 036510           66 PKFGSILASCSFDGTVIIWKEGNSNEWIKDHVF---------EDHKSSVNSIDWAPHELGLCLACGS-SDGNISVFTARA  135 (288)
Q Consensus        66 ~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~---------~~h~~~v~~l~~~p~~~~~~l~sg~-~d~~i~i~d~~~  135 (288)
                      +  |+++++.+.++.|++|+.......  ...+         ..+......++++|++ +.++++.+ .++.|++|+. .
T Consensus       101 ~--g~l~v~d~~~~~v~~~~~~g~~~~--~~~~~~~~~~g~~~~~~~~P~~ia~~~~~-g~lyv~d~~~~~~I~~~~~-~  174 (329)
T 3fvz_A          101 D--GNYWVTDVALHQVFKLDPHSKEGP--LLILGRSMQPGSDQNHFCQPTDVAVEPST-GAVFVSDGYCNSRIVQFSP-S  174 (329)
T ss_dssp             T--SCEEEEETTTTEEEEECTTCSSCC--SEEESBTTBCCCSTTCCSSEEEEEECTTT-CCEEEEECSSCCEEEEECT-T
T ss_pred             C--CCEEEEECCCCEEEEEeCCCCeEE--EEEecccCCCCCCccccCCCcEEEEeCCC-CeEEEEeCCCCCeEEEEcC-C
Confidence            4  789999999999999997432111  1222         2344468899999942 56677775 6889999983 2


Q ss_pred             CCCeeeEEee-cc--------CCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecc-
Q 036510          136 DGGWDTSRID-QA--------HPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPAL-  205 (288)
Q Consensus       136 ~~~~~~~~~~-~~--------~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-  205 (288)
                      + .... ... .+        +-.....|.++|+.             +.++++...++.|++||..++.    .+..+ 
T Consensus       175 g-~~~~-~~~~~g~~~~~~~~~~~~p~gia~d~~~-------------g~l~v~d~~~~~I~~~~~~~G~----~~~~~~  235 (329)
T 3fvz_A          175 G-KFVT-QWGEESSGSSPRPGQFSVPHSLALVPHL-------------DQLCVADRENGRIQCFKTDTKE----FVREIK  235 (329)
T ss_dssp             S-CEEE-EECEECCSSSCCTTEESCEEEEEEETTT-------------TEEEEEETTTTEEEEEETTTCC----EEEEEC
T ss_pred             C-CEEE-EeccCCCCCCCCCcccCCCcEEEEECCC-------------CEEEEEECCCCEEEEEECCCCc----EEEEEe
Confidence            2 2211 111 11        11236778888873             2677888889999999987553    22222 


Q ss_pred             -ccCCcceEEEEecCCCCC--CCcEEEEEeCCCcEEEEEeecCCCcccceEe---eccccCeEEEEeecCCCEEEEEeCC
Q 036510          206 -QMHTDWVRDVAWAPNLGL--PKSTIASASEDGKVIIWTVAREGDQWEGKVL---HDFKTPVYRVSWSLTGNILAVADGN  279 (288)
Q Consensus       206 -~~h~~~V~~v~~sp~~~~--~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~---~~~~~~i~~~~~spdg~~l~s~~~d  279 (288)
                       ..+...+.++.|+|..-+  .+...++.+.+..|++|+....+.   ...+   ..+...+..++++|||+++++...+
T Consensus       236 ~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~---~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~  312 (329)
T 3fvz_A          236 HASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEI---IDVFKPVRKHFDMPHDIVASEDGTVYIGDAHT  312 (329)
T ss_dssp             CTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCE---EEEECCSSSCCSSEEEEEECTTSEEEEEESSS
T ss_pred             ccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeE---EEEEcCCCCccCCeeEEEECCCCCEEEEECCC
Confidence             345567889999992100  011222334455899999764321   1222   1233568899999999888888889


Q ss_pred             CcEEEeEc
Q 036510          280 NNVTLWEE  287 (288)
Q Consensus       280 ~~v~~w~~  287 (288)
                      +.|++|+.
T Consensus       313 ~~I~~~~~  320 (329)
T 3fvz_A          313 NTVWKFTL  320 (329)
T ss_dssp             CCEEEEEE
T ss_pred             CEEEEEeC
Confidence            99999984

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.70  E-value=2.1e-15  Score=131.52  Aligned_cols=241  Identities=9%  Similarity=0.027  Sum_probs=146.1

Q ss_pred             ccccccceEE-----EEEcCCCCEEEEeeC-CCc--EEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC
Q 036510            7 ETGHEDTVHD-----VAMDYYGKRLATASS-DYS--IKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD   78 (288)
Q Consensus         7 ~~~h~~~v~~-----~~~s~~g~~l~s~~~-d~~--i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d   78 (288)
                      ++.|......     .+|+|||++|+.++. ++.  +.+||+..  ++......+|...+..+.|+++  ++.|+.++.+
T Consensus        26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~--g~~~~lt~~~~~~~~~~~~spd--g~~l~~~~~~  101 (388)
T 3pe7_A           26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNT--QVATQLTEGRGDNTFGGFLSPD--DDALFYVKDG  101 (388)
T ss_dssp             CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTT--CEEEECCCSSCBCSSSCEECTT--SSEEEEEETT
T ss_pred             ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCC--CceEEeeeCCCCCccceEEcCC--CCEEEEEeCC
Confidence            3455555555     789999999998887 675  55566543  3444445566665556789875  8999999999


Q ss_pred             CcEEEeecCCCCceEEeEEeecCCCceeEEEe--ccCCCCeEEEEE----------------------eCCCcEEEEeec
Q 036510           79 GTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDW--APHELGLCLACG----------------------SSDGNISVFTAR  134 (288)
Q Consensus        79 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~--~p~~~~~~l~sg----------------------~~d~~i~i~d~~  134 (288)
                      +.+.+||+.++..   ...+..+...+....|  +|+  +.+++..                      ..+..|.+||+.
T Consensus       102 ~~l~~~d~~~g~~---~~~~~~~~~~~~~~~~~~~~d--g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~  176 (388)
T 3pe7_A          102 RNLMRVDLATLEE---NVVYQVPAEWVGYGTWVANSD--CTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK  176 (388)
T ss_dssp             TEEEEEETTTCCE---EEEEECCTTEEEEEEEEECTT--SSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT
T ss_pred             CeEEEEECCCCcc---eeeeechhhcccccceeECCC--CCeeccccccCcccccccccchhhhhhccCCcceEEEEECC
Confidence            9999999987652   2233444444544444  666  4445432                      234678889887


Q ss_pred             CCCCeeeEEeeccCCCCeeEEEeCC-CCCCCceecccccCCCceeEEeecC------CcEEEEEEeCCceeeeeeecccc
Q 036510          135 ADGGWDTSRIDQAHPVGVTSVSWAP-STAPGALVGSGFLDPVQKLCSGGCD------NTVKVWKLYNGIWKMDCFPALQM  207 (288)
Q Consensus       135 ~~~~~~~~~~~~~~~~~v~~i~~~p-~~~~~~~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~  207 (288)
                      .+..    .....+...+..+.|+| ++              +.|+..+.+      ..|.++|...+.     ...+..
T Consensus       177 ~g~~----~~l~~~~~~~~~~~~sp~dg--------------~~l~~~~~~~~~~~~~~l~~~d~~~~~-----~~~l~~  233 (388)
T 3pe7_A          177 TGES----TVILQENQWLGHPIYRPYDD--------------STVAFCHEGPHDLVDARMWLINEDGTN-----MRKVKT  233 (388)
T ss_dssp             TCCE----EEEEEESSCEEEEEEETTEE--------------EEEEEEECSCTTTSSCSEEEEETTSCC-----CEESCC
T ss_pred             CCce----EEeecCCccccccEECCCCC--------------CEEEEEEecCCCCCcceEEEEeCCCCc-----eEEeee
Confidence            6532    12223455688999999 76              455544432      256666654431     122333


Q ss_pred             CC--cceEEEEecCCCCCCCcEEEEEeC--CC---cEEEEEeecCCCcccceEeecccc--C----eEEEEeecCCCEEE
Q 036510          208 HT--DWVRDVAWAPNLGLPKSTIASASE--DG---KVIIWTVAREGDQWEGKVLHDFKT--P----VYRVSWSLTGNILA  274 (288)
Q Consensus       208 h~--~~V~~v~~sp~~~~~~~~l~s~s~--D~---~i~iw~~~~~~~~~~~~~~~~~~~--~----i~~~~~spdg~~l~  274 (288)
                      +.  ..+..+.|+|++    +.|+..+.  ++   .|.+||+...+.    ..+..+..  .    ...+.|+|||+.|+
T Consensus       234 ~~~~~~~~~~~~spdg----~~l~~~~~~~~~~~~~l~~~d~~~g~~----~~l~~~~~~~~~~~~~~~~~~spdg~~l~  305 (388)
T 3pe7_A          234 HAEGESCTHEFWVPDG----SALVYVSYLKGSPDRFIYSADPETLEN----RQLTSMPACSHLMSNYDGSLMVGDGSDAP  305 (388)
T ss_dssp             CCTTEEEEEEEECTTS----SCEEEEEEETTCCCEEEEEECTTTCCE----EEEEEECCEEEEEECTTSSEEEEEECCC-
T ss_pred             CCCCcccccceECCCC----CEEEEEecCCCCCcceEEEEecCCCce----EEEEcCCCceeeeecCCCCeEccCCCcce
Confidence            33  357889999985    45655443  22   399999865321    12211111  0    11237999999888


Q ss_pred             EE---------eCCCcEEEeEc
Q 036510          275 VA---------DGNNNVTLWEE  287 (288)
Q Consensus       275 s~---------~~d~~v~~w~~  287 (288)
                      ..         ..+..|.+||.
T Consensus       306 ~~~~~~~~~~~~~~~~i~~~d~  327 (388)
T 3pe7_A          306 VDVQDDSGYKIENDPFLYVFNM  327 (388)
T ss_dssp             -----------CCCCEEEEEET
T ss_pred             eEeeeccccccCCCCEEEEEec
Confidence            64         45678999985

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.70  E-value=5.2e-16  Score=135.41  Aligned_cols=246  Identities=8%  Similarity=0.008  Sum_probs=148.3

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEe----------
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASC----------   75 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----------   75 (288)
                      +..+|...+..+.|+|||++|+.++.++.+++||+..+.  ....+..+...+....|....++.+++..          
T Consensus        75 lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~--~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~  152 (388)
T 3pe7_A           75 LTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLE--ENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPL  152 (388)
T ss_dssp             CCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCC--EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCC
T ss_pred             eeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCc--ceeeeechhhcccccceeECCCCCeeccccccCcccccc
Confidence            444666666567899999999999999999999986543  33334445544444444212347777642          


Q ss_pred             ------------eCCCcEEEeecCCCCceEEeEEeecCCCceeEEEecc-CCCCeEEEEEeCC------CcEEEEeecCC
Q 036510           76 ------------SFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAP-HELGLCLACGSSD------GNISVFTARAD  136 (288)
Q Consensus        76 ------------s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~~~l~sg~~d------~~i~i~d~~~~  136 (288)
                                  ..+..|.+||+.++..    ..+..+...+..+.|+| +  +..++....+      ..|.+++....
T Consensus       153 ~~~~~~~~~~~~~~~~~l~~~d~~~g~~----~~l~~~~~~~~~~~~sp~d--g~~l~~~~~~~~~~~~~~l~~~d~~~~  226 (388)
T 3pe7_A          153 TDWKKFHEFYFTKPCCRLMRVDLKTGES----TVILQENQWLGHPIYRPYD--DSTVAFCHEGPHDLVDARMWLINEDGT  226 (388)
T ss_dssp             CSHHHHHHHGGGCCCEEEEEEETTTCCE----EEEEEESSCEEEEEEETTE--EEEEEEEECSCTTTSSCSEEEEETTSC
T ss_pred             cccchhhhhhccCCcceEEEEECCCCce----EEeecCCccccccEECCCC--CCEEEEEEecCCCCCcceEEEEeCCCC
Confidence                        3457889999876542    23334566789999999 7  5555555443      36777766433


Q ss_pred             CCeeeEEeeccCC--CCeeEEEeCCCCCCCceecccccCCCceeEE-eec-CC---cEEEEEEeCCceeeeeeeccccCC
Q 036510          137 GGWDTSRIDQAHP--VGVTSVSWAPSTAPGALVGSGFLDPVQKLCS-GGC-DN---TVKVWKLYNGIWKMDCFPALQMHT  209 (288)
Q Consensus       137 ~~~~~~~~~~~~~--~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s-~~~-d~---~i~iwd~~~~~~~~~~~~~~~~h~  209 (288)
                      ..    .....+.  ..+..+.|+|++              +.|+. +.. ++   .|.+||+.++..  +.+..+.++.
T Consensus       227 ~~----~~l~~~~~~~~~~~~~~spdg--------------~~l~~~~~~~~~~~~~l~~~d~~~g~~--~~l~~~~~~~  286 (388)
T 3pe7_A          227 NM----RKVKTHAEGESCTHEFWVPDG--------------SALVYVSYLKGSPDRFIYSADPETLEN--RQLTSMPACS  286 (388)
T ss_dssp             CC----EESCCCCTTEEEEEEEECTTS--------------SCEEEEEEETTCCCEEEEEECTTTCCE--EEEEEECCEE
T ss_pred             ce----EEeeeCCCCcccccceECCCC--------------CEEEEEecCCCCCcceEEEEecCCCce--EEEEcCCCce
Confidence            21    1112222  247788999998              43433 222 22   399999887642  2222222211


Q ss_pred             cc---eEEEEecCCCCCCCcEEEEE---------eCCCcEEEEEeecCCCcccceEeecccc-----------CeEEEEe
Q 036510          210 DW---VRDVAWAPNLGLPKSTIASA---------SEDGKVIIWTVAREGDQWEGKVLHDFKT-----------PVYRVSW  266 (288)
Q Consensus       210 ~~---V~~v~~sp~~~~~~~~l~s~---------s~D~~i~iw~~~~~~~~~~~~~~~~~~~-----------~i~~~~~  266 (288)
                      ..   ...+.|+|++    ++|+..         ..+..|.+||+....    ...+..+..           .+..++|
T Consensus       287 ~~~~~~~~~~~spdg----~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~  358 (388)
T 3pe7_A          287 HLMSNYDGSLMVGDG----SDAPVDVQDDSGYKIENDPFLYVFNMKNGT----QHRVARHDTSWKVFEGDRQVTHPHPSF  358 (388)
T ss_dssp             EEEECTTSSEEEEEE----CCC------------CCCCEEEEEETTTTE----EEEEEECCCCCCCBTTBSSTTCCCCEE
T ss_pred             eeeecCCCCeEccCC----CcceeEeeeccccccCCCCEEEEEeccCCc----eEEeccccCcccccccccccCCCCccC
Confidence            11   1123689985    345432         456789999986431    123333333           4678899


Q ss_pred             ecCCCEEEEEe-CCCcEEEeEc
Q 036510          267 SLTGNILAVAD-GNNNVTLWEE  287 (288)
Q Consensus       267 spdg~~l~s~~-~d~~v~~w~~  287 (288)
                      +|||+.|+.++ .++..+||.+
T Consensus       359 spDg~~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          359 TPDDKQILFTSDVHGKPALYLA  380 (388)
T ss_dssp             CTTSSEEEEEECTTSSCEEEEE
T ss_pred             CCCCCEEEEEecCCCceeEEEE
Confidence            99999888776 4778888863

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.66  E-value=6.4e-15  Score=137.71  Aligned_cols=248  Identities=12%  Similarity=0.014  Sum_probs=159.2

Q ss_pred             ccccccceEEEEEcCCCCEEEEe--eCCCcEEEEEeCCCCceeeEEEeccccCeE---------EEEecCCCCCCE-EEE
Q 036510            7 ETGHEDTVHDVAMDYYGKRLATA--SSDYSIKIIGVGNNTSQHLAKLSGHKGAVW---------EVAWAHPKFGSI-LAS   74 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~~l~s~--~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~---------~~~~~~~~~~~~-l~s   74 (288)
                      +.+|...+..++|++++-++++.  +.++...||.....  .....+..|...+.         ...|+..++|+. |+.
T Consensus        19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~   96 (662)
T 3azo_A           19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD--GAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF   96 (662)
T ss_dssp             HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT--SCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred             HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCC--CCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence            45789999999999887677777  56888999986322  23556677766665         566762124777 665


Q ss_pred             eeC-CCcEEEeecC--CCCceEEeEEeec-----CCCceeEEEeccCCCCeEEEEEeCC----------CcEEEEeecCC
Q 036510           75 CSF-DGTVIIWKEG--NSNEWIKDHVFED-----HKSSVNSIDWAPHELGLCLACGSSD----------GNISVFTARAD  136 (288)
Q Consensus        75 ~s~-d~~v~iwd~~--~~~~~~~~~~~~~-----h~~~v~~l~~~p~~~~~~l~sg~~d----------~~i~i~d~~~~  136 (288)
                      ++. +..|.+++..  ....   ...+..     |...+..++|+|+  +..+++++.+          ..|++|++...
T Consensus        97 ~~~~~~~l~~~~~~~~g~~~---~~~l~~~~~~~~~~~~~~~~~spD--g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  171 (662)
T 3azo_A           97 THFGDQRLYAFEPDAPGGAV---PRPLTPVSAVGGGLRWADPVLLPE--RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGS  171 (662)
T ss_dssp             EBTTTCCEEEECTTSTTCCC---CEECSCCCCSTTCEEEEEEEEETT--TTEEEEEEEEECSSSTTCEEEEEEEEETTST
T ss_pred             EECCCCeEEEEcCCCCCCCC---CEeccCCccCCCCccccCcEECCC--CCEEEEEEecccCCCCCCceeEEEEEECCCC
Confidence            543 5556665553  1022   123333     5667889999998  5566766665          57889988651


Q ss_pred             -----CCeeeEEeec-cCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecC--------CcEEEEEEe-CCceeeee
Q 036510          137 -----GGWDTSRIDQ-AHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCD--------NTVKVWKLY-NGIWKMDC  201 (288)
Q Consensus       137 -----~~~~~~~~~~-~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d--------~~i~iwd~~-~~~~~~~~  201 (288)
                           +..   .... .+...+..+.|+|++              +.|+..+.+        ..|.+||+. ++... +.
T Consensus       172 ~~~~~~~~---~~l~~~~~~~~~~~~~SpDG--------------~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~-~~  233 (662)
T 3azo_A          172 AAADRSAV---RELSDDAHRFVTGPRLSPDG--------------RQAVWLAWDHPRMPWEGTELKTARVTEDGRFA-DT  233 (662)
T ss_dssp             TTTCGGGS---EESSCSCSSEECCCEECTTS--------------SEEEEEEECTTCCTTTCEEEEEEEECTTSCEE-EE
T ss_pred             ccccCCce---eEEEecCCCcccCceECCCC--------------CEEEEEECCCCCCCCCCcEEEEEEECCCCccc-cc
Confidence                 111   2222 344567788999997              667766644        369999998 44110 11


Q ss_pred             eeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccc-cC--------eEEEEeecCCCE
Q 036510          202 FPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFK-TP--------VYRVSWSLTGNI  272 (288)
Q Consensus       202 ~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~-~~--------i~~~~~spdg~~  272 (288)
                      .....+|...+..+.|+|++    +++++++.|+..+||.+......  ...+..+. ..        +..++|+|+|++
T Consensus       234 ~~l~~~~~~~~~~~~~spdg----~l~~~~~~~~~~~l~~~~~~~~~--~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~  307 (662)
T 3azo_A          234 RTLLGGPEEAIAQAEWAPDG----SLIVATDRTGWWNLHRVDPATGA--ATQLCRREEEFAGPLWTPGMRWFAPLANGLI  307 (662)
T ss_dssp             EEEEEETTBCEEEEEECTTS----CEEEEECTTSSCEEEEECTTTCC--EEESSCCSSBSSCCCCSTTCCSEEECTTSCE
T ss_pred             EEeCCCCCceEcceEECCCC----eEEEEECCCCCeEEEEEECCCCc--eeecccccccccCccccccCceEeEeCCCEE
Confidence            12224456789999999985    57778888885555555432111  11121111 11        567899999999


Q ss_pred             EEEEeCCCcEEEeE
Q 036510          273 LAVADGNNNVTLWE  286 (288)
Q Consensus       273 l~s~~~d~~v~~w~  286 (288)
                      +++++. ++++||.
T Consensus       308 ~~~~~~-~~~~l~~  320 (662)
T 3azo_A          308 AVVHGK-GAAVLGI  320 (662)
T ss_dssp             EEEEBS-SSCEEEE
T ss_pred             EEEEEc-CccEEEE
Confidence            999998 9999994

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.66  E-value=1.8e-14  Score=134.65  Aligned_cols=238  Identities=12%  Similarity=0.023  Sum_probs=145.0

Q ss_pred             EEEEc--CCCCE-EEEeeC-CCcEEEEEeCCCCceeeEEEec-----cccCeEEEEecCCCCCCEEEEeeCC--------
Q 036510           16 DVAMD--YYGKR-LATASS-DYSIKIIGVGNNTSQHLAKLSG-----HKGAVWEVAWAHPKFGSILASCSFD--------   78 (288)
Q Consensus        16 ~~~~s--~~g~~-l~s~~~-d~~i~lwd~~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~~l~s~s~d--------   78 (288)
                      ...|+  |||++ |+.++. +..|.+++...........+..     |...+..++|+++  |+.|++++.|        
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spD--g~~l~~~~~~~~~~~~~~  158 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPE--RGEVWCMAEEFTGEGPSD  158 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETT--TTEEEEEEEEECSSSTTC
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCC--CCEEEEEEecccCCCCCC
Confidence            44454  99988 665543 4445555543001012344555     6778899999975  8899988887        


Q ss_pred             --CcEEEeecCCC-----CceEEeEEee-cCCCceeEEEeccCCCCeEEEEEeCC--------CcEEEEeecCCCCe-ee
Q 036510           79 --GTVIIWKEGNS-----NEWIKDHVFE-DHKSSVNSIDWAPHELGLCLACGSSD--------GNISVFTARADGGW-DT  141 (288)
Q Consensus        79 --~~v~iwd~~~~-----~~~~~~~~~~-~h~~~v~~l~~~p~~~~~~l~sg~~d--------~~i~i~d~~~~~~~-~~  141 (288)
                        .+|.+|++...     ..   ...+. .+...+..++|+||  ++.++..+.+        ..|++||+...+.. ..
T Consensus       159 ~~~~i~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~SpD--G~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~  233 (662)
T 3azo_A          159 VRRFLAAVPLDGSAAADRSA---VRELSDDAHRFVTGPRLSPD--GRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADT  233 (662)
T ss_dssp             EEEEEEEEETTSTTTTCGGG---SEESSCSCSSEECCCEECTT--SSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEE
T ss_pred             ceeEEEEEECCCCccccCCc---eeEEEecCCCcccCceECCC--CCEEEEEECCCCCCCCCCcEEEEEEECCCCccccc
Confidence              68999998751     22   12344 45567888999998  5666666544        37999999732211 22


Q ss_pred             EEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEe--CCceeeeeeeccccCCcc--------
Q 036510          142 SRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLY--NGIWKMDCFPALQMHTDW--------  211 (288)
Q Consensus       142 ~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~h~~~--------  211 (288)
                      ......|...+..+.|+|++              ++++++..++..+||.+.  ++..  +  ....++...        
T Consensus       234 ~~l~~~~~~~~~~~~~spdg--------------~l~~~~~~~~~~~l~~~~~~~~~~--~--~l~~~~~~~~~p~w~~~  295 (662)
T 3azo_A          234 RTLLGGPEEAIAQAEWAPDG--------------SLIVATDRTGWWNLHRVDPATGAA--T--QLCRREEEFAGPLWTPG  295 (662)
T ss_dssp             EEEEEETTBCEEEEEECTTS--------------CEEEEECTTSSCEEEEECTTTCCE--E--ESSCCSSBSSCCCCSTT
T ss_pred             EEeCCCCCceEcceEECCCC--------------eEEEEECCCCCeEEEEEECCCCce--e--ecccccccccCcccccc
Confidence            23334556779999999997              567777788855555543  3321  1  111222221        


Q ss_pred             eEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCC--EEEEEeCCCcEEEeE
Q 036510          212 VRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGN--ILAVADGNNNVTLWE  286 (288)
Q Consensus       212 V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~--~l~s~~~d~~v~~w~  286 (288)
                      +.++.|+|+.    .++++++. +.+++|.+......  ...+..+...+..+ ++++++  .+++++.+....||.
T Consensus       296 ~~~~~~~~~~----~~~~~~~~-~~~~l~~~d~~~~~--~~~l~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~  364 (662)
T 3azo_A          296 MRWFAPLANG----LIAVVHGK-GAAVLGILDPESGE--LVDAAGPWTEWAAT-LTVSGTRAVGVAASPRTAYEVVE  364 (662)
T ss_dssp             CCSEEECTTS----CEEEEEBS-SSCEEEEEETTTTE--EEECCSSCCEEEEE-EEEETTEEEEEEEETTEEEEEEE
T ss_pred             CceEeEeCCC----EEEEEEEc-CccEEEEEECCCCc--EEEecCCCCeEEEE-EecCCCEEEEEEcCCCCCCEEEE
Confidence            4578888863    67888888 99999976543221  23344444556655 145554  445556665555554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.65  E-value=1.3e-14  Score=123.49  Aligned_cols=205  Identities=13%  Similarity=0.114  Sum_probs=128.3

Q ss_pred             ceEEEEEcCCCCEE-EEeeCCCcEEEEEeCCCCceeeEEEec-c----ccCeEEEEecCCCCCCEEEEee----------
Q 036510           13 TVHDVAMDYYGKRL-ATASSDYSIKIIGVGNNTSQHLAKLSG-H----KGAVWEVAWAHPKFGSILASCS----------   76 (288)
Q Consensus        13 ~v~~~~~s~~g~~l-~s~~~d~~i~lwd~~~~~~~~~~~~~~-h----~~~v~~~~~~~~~~~~~l~s~s----------   76 (288)
                      .+..++|+|+|+++ ++++.++.|.+||+...  +.+..+.. +    ...+..++|+++  +++++.++          
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~d--g~~l~~~~~~~~~~~~~~  110 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTG--ETLGRIDLSTPEERVKSLFGAALSPD--GKTLAIYESPVRLELTHF  110 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTC--CEEEEEECCBTTEEEECTTCEEECTT--SSEEEEEEEEEEECSSCE
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCC--CeEeeEEcCCcccccccccceEECCC--CCEEEEEecccccccccc
Confidence            47789999999765 55666889999998543  44444432 2    235678899864  77887775          


Q ss_pred             --CCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccC-CCCee
Q 036510           77 --FDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAH-PVGVT  153 (288)
Q Consensus        77 --~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~-~~~v~  153 (288)
                        .++.|.+||+.++.   ....+.. ...+.++.|+|+  +..++++  ++.|.+||+..+....  .....+ ...  
T Consensus       111 ~~~~~~i~v~d~~~~~---~~~~~~~-~~~~~~~~~s~d--g~~l~~~--~~~i~~~d~~~~~~~~--~~~~~~~~~~--  178 (337)
T 1pby_B          111 EVQPTRVALYDAETLS---RRKAFEA-PRQITMLAWARD--GSKLYGL--GRDLHVMDPEAGTLVE--DKPIQSWEAE--  178 (337)
T ss_dssp             EECCCEEEEEETTTTE---EEEEEEC-CSSCCCEEECTT--SSCEEEE--SSSEEEEETTTTEEEE--EECSTTTTTT--
T ss_pred             cccCceEEEEECCCCc---EEEEEeC-CCCcceeEECCC--CCEEEEe--CCeEEEEECCCCcEee--eeeccccCCC--
Confidence              67999999987543   2233433 346788999998  4445555  6889999987542211  111111 011  


Q ss_pred             EEEeCCCCCCC-----------------------------------------------------ceecccccCCCceeEE
Q 036510          154 SVSWAPSTAPG-----------------------------------------------------ALVGSGFLDPVQKLCS  180 (288)
Q Consensus       154 ~i~~~p~~~~~-----------------------------------------------------~~~~~~~~~~~~~l~s  180 (288)
                       +.|+|++...                                                     ......+..+++++++
T Consensus       179 -~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  257 (337)
T 1pby_B          179 -TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFG  257 (337)
T ss_dssp             -TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred             -ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEE
Confidence             1223322100                                                     0001223344566776


Q ss_pred             eecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510          181 GGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE  245 (288)
Q Consensus       181 ~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~  245 (288)
                      +  ++.|.+||+.++.    .+..+.. ...+.++.|+|++    ++|++++.|+.|++||+...
T Consensus       258 ~--~~~v~~~d~~~~~----~~~~~~~-~~~~~~~~~s~dg----~~l~~~~~~~~i~v~d~~~~  311 (337)
T 1pby_B          258 A--YNVLESFDLEKNA----SIKRVPL-PHSYYSVNVSTDG----STVWLGGALGDLAAYDAETL  311 (337)
T ss_dssp             E--ESEEEEEETTTTE----EEEEEEC-SSCCCEEEECTTS----CEEEEESBSSEEEEEETTTC
T ss_pred             e--CCeEEEEECCCCc----CcceecC-CCceeeEEECCCC----CEEEEEcCCCcEEEEECcCC
Confidence            6  7899999987753    2223322 2347899999984    57888888999999998653

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.64  E-value=2.2e-13  Score=114.71  Aligned_cols=236  Identities=14%  Similarity=0.034  Sum_probs=152.6

Q ss_pred             ccccceEEEEEcCCCC-EEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecC
Q 036510            9 GHEDTVHDVAMDYYGK-RLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEG   87 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~-~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~   87 (288)
                      .+.....++.|+|+|+ +++++..++.|..|+....    ...+..+...+.+++++++  +.++++...++.|.+||..
T Consensus        25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~l~~~~d--g~l~v~~~~~~~i~~~d~~   98 (296)
T 3e5z_A           25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ----LSPEMHPSHHQNGHCLNKQ--GHLIACSHGLRRLERQREP   98 (296)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC----EEEEESSCSSEEEEEECTT--CCEEEEETTTTEEEEECST
T ss_pred             cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC----eEEEECCCCCcceeeECCC--CcEEEEecCCCeEEEEcCC
Confidence            3455667899999998 7788888999999997542    4556667788999999764  7888887778999999986


Q ss_pred             CCCceEEeEEeec-CCCceeEEEeccCCCCeEEEE----EeC-------------CCcEEEEeecCCCCeeeEEeeccCC
Q 036510           88 NSNEWIKDHVFED-HKSSVNSIDWAPHELGLCLAC----GSS-------------DGNISVFTARADGGWDTSRIDQAHP  149 (288)
Q Consensus        88 ~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~~l~s----g~~-------------d~~i~i~d~~~~~~~~~~~~~~~~~  149 (288)
                      ++........... ....++.++++|+  +.++++    |..             .+.|  |.+...+..   .....+.
T Consensus        99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~--G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l--~~~~~~g~~---~~~~~~~  171 (296)
T 3e5z_A           99 GGEWESIADSFEGKKLNSPNDVCLAPD--GSLWFSDPTYGIDKPEEGYGGEMELPGRWV--FRLAPDGTL---SAPIRDR  171 (296)
T ss_dssp             TCCEEEEECEETTEECCCCCCEEECTT--SCEEEEECSHHHHCGGGSSCCCCCSSSCEE--EEECTTSCE---EEEECCC
T ss_pred             CCcEEEEeeccCCCCCCCCCCEEECCC--CCEEEECCccccccccccccccccCCCcEE--EEECCCCCE---EEeecCC
Confidence            6542111111111 1234677899987  566665    321             2344  444332322   2222344


Q ss_pred             CCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEe-CCce-eeeeeeccccCCcceEEEEecCCCCCCCcE
Q 036510          150 VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLY-NGIW-KMDCFPALQMHTDWVRDVAWAPNLGLPKST  227 (288)
Q Consensus       150 ~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~  227 (288)
                      .....+.|+|++              +.+++.+.++.|.+||+. ++.. ...  ..+..+...+..+.+.+++    ++
T Consensus       172 ~~~~gi~~s~dg--------------~~lv~~~~~~~i~~~~~~~~g~~~~~~--~~~~~~~~~p~~i~~d~~G----~l  231 (296)
T 3e5z_A          172 VKPNGLAFLPSG--------------NLLVSDTGDNATHRYCLNARGETEYQG--VHFTVEPGKTDGLRVDAGG----LI  231 (296)
T ss_dssp             SSEEEEEECTTS--------------CEEEEETTTTEEEEEEECSSSCEEEEE--EEECCSSSCCCSEEEBTTS----CE
T ss_pred             CCCccEEECCCC--------------CEEEEeCCCCeEEEEEECCCCcCcCCC--eEeeCCCCCCCeEEECCCC----CE
Confidence            556789999987              556788888999999996 3321 101  1112344456788999874    45


Q ss_pred             EEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEe-ecCCCEEEEEeCCCcEEE
Q 036510          228 IASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSW-SLTGNILAVADGNNNVTL  284 (288)
Q Consensus       228 l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~-spdg~~l~s~~~d~~v~~  284 (288)
                      .++.  ++.|.+|+.+.  .  ....+..... +.+++| +||++.|++++.++..++
T Consensus       232 ~v~~--~~~v~~~~~~g--~--~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~  282 (296)
T 3e5z_A          232 WASA--GDGVHVLTPDG--D--ELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSI  282 (296)
T ss_dssp             EEEE--TTEEEEECTTS--C--EEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred             EEEc--CCeEEEECCCC--C--EEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence            5555  78999998752  1  1223333344 889999 599999999988754443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.64  E-value=1.4e-13  Score=129.91  Aligned_cols=251  Identities=11%  Similarity=-0.008  Sum_probs=152.1

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCC-----cEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCc
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDY-----SIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGT   80 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~-----~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~   80 (288)
                      +..+|+..+..++|||||++||.++.++     .|++||+..+  +.+.....+ ..+..++|+++  |+.|+.++.++.
T Consensus       119 l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg--~~~~~~~~~-~~~~~~~wspD--g~~l~~~~~~~~  193 (710)
T 2xdw_A          119 LSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA--KELPDVLER-VKFSCMAWTHD--GKGMFYNAYPQQ  193 (710)
T ss_dssp             GCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT--EEEEEEEEE-ECSCCEEECTT--SSEEEEEECCCC
T ss_pred             hccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCC--CCCcccccC-cccceEEEEeC--CCEEEEEEECCc
Confidence            3445666788899999999988765543     8999998654  333322222 23567999875  889998888776


Q ss_pred             ----------------EEEeecCCCCce-EEeEEeecCCCceeEEEeccCCCCeEEEEEeC-----CCcEEEEeecC---
Q 036510           81 ----------------VIIWKEGNSNEW-IKDHVFEDHKSSVNSIDWAPHELGLCLACGSS-----DGNISVFTARA---  135 (288)
Q Consensus        81 ----------------v~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~-----d~~i~i~d~~~---  135 (288)
                                      |++|++.++... ........|...+..+.|+|+  ++.++..+.     +..|++||+..   
T Consensus       194 ~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpD--g~~l~~~~~~~~~~~~~l~~~d~~~~~~  271 (710)
T 2xdw_A          194 DGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDD--GRYVLLSIREGCDPVNRLWYCDLQQESN  271 (710)
T ss_dssp             SSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT--SCEEEEEEECSSSSCCEEEEEEGGGSSS
T ss_pred             cccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCC--CCEEEEEEEccCCCccEEEEEECccccc
Confidence                            999998765321 121122224555789999998  455554443     56899999875   


Q ss_pred             ---CC-CeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecC---CcEEEEEEeCCceeeeeeeccccC
Q 036510          136 ---DG-GWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCD---NTVKVWKLYNGIWKMDCFPALQMH  208 (288)
Q Consensus       136 ---~~-~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~h  208 (288)
                         +. .+   .....+...+.. .|+|++.             .+++.+..+   ..|.+||+.++..  .....+..|
T Consensus       272 ~~~~~~~~---~~l~~~~~~~~~-~~s~dg~-------------~l~~~s~~~~~~~~l~~~d~~~~~~--~~~~~l~~~  332 (710)
T 2xdw_A          272 GITGILKW---VKLIDNFEGEYD-YVTNEGT-------------VFTFKTNRHSPNYRLINIDFTDPEE--SKWKVLVPE  332 (710)
T ss_dssp             SSCSSCCC---EEEECSSSSCEE-EEEEETT-------------EEEEEECTTCTTCEEEEEETTSCCG--GGCEEEECC
T ss_pred             ccCCccce---EEeeCCCCcEEE-EEeccCC-------------EEEEEECCCCCCCEEEEEeCCCCCc--ccceeccCC
Confidence               32 12   222233333433 4677652             233333322   3588888765421  011233334


Q ss_pred             Cc--ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEE-e---CCCcE
Q 036510          209 TD--WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVA-D---GNNNV  282 (288)
Q Consensus       209 ~~--~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~-~---~d~~v  282 (288)
                      ..  .+..+.|+++    +.++++...|+..+||-....... ....+..+...+..++++|+++.++.. +   ..++|
T Consensus       333 ~~~~~~~~~~~~~~----~~lv~~~~~~g~~~l~~~~~~~g~-~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i  407 (710)
T 2xdw_A          333 HEKDVLEWVACVRS----NFLVLCYLHDVKNTLQLHDLATGA-LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGII  407 (710)
T ss_dssp             CSSCEEEEEEEETT----TEEEEEEEETTEEEEEEEETTTCC-EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEE
T ss_pred             CCCCeEEEEEEEcC----CEEEEEEEECCEEEEEEEECCCCC-EEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEE
Confidence            33  6888999864    367888888986655544421111 112233335568889999999876644 2   24688


Q ss_pred             EEeEc
Q 036510          283 TLWEE  287 (288)
Q Consensus       283 ~~w~~  287 (288)
                      .+||+
T Consensus       408 ~~~d~  412 (710)
T 2xdw_A          408 YHCDL  412 (710)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            88885

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.61  E-value=1.1e-12  Score=112.65  Aligned_cols=221  Identities=13%  Similarity=0.148  Sum_probs=137.6

Q ss_pred             ceEEEEEcCCCCEEEEeeCC---Cc--EEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC---------
Q 036510           13 TVHDVAMDYYGKRLATASSD---YS--IKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD---------   78 (288)
Q Consensus        13 ~v~~~~~s~~g~~l~s~~~d---~~--i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---------   78 (288)
                      .+..++|+|||++|+.++.+   +.  |.+|++..  ++... +..+.. +..++|+++  |+.|+.++.+         
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~--g~~~~-l~~~~~-~~~~~wspd--g~~l~~~~~~~~~~~~~~~  133 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLET--LSSKK-ILEAKN-IRSLEWNED--SRKLLIVGFKRREDEDFIF  133 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTT--TEEEE-EEEESE-EEEEEECTT--SSEEEEEEECCCC------
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCC--CceEE-EEcCCC-ccceeECCC--CCEEEEEEccCCCcCCcEE
Confidence            46678999999999887754   34  55556543  23332 333334 899999875  7888877643         


Q ss_pred             ------------------CcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCC-------cEEEEee
Q 036510           79 ------------------GTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDG-------NISVFTA  133 (288)
Q Consensus        79 ------------------~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~-------~i~i~d~  133 (288)
                                        ..|.+|++.++..   ...+.. . .+..+.|+|+  + +++++..++       ...+|.+
T Consensus       134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~---~~~l~~-~-~~~~~~~spd--g-~~~~~~~~~~~~~~~~~~~l~~~  205 (347)
T 2gop_A          134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEEV---IEEFEK-P-RFSSGIWHRD--K-IVVNVPHREIIPQYFKFWDIYIW  205 (347)
T ss_dssp             ---CCCC---------CEEEEEEEETTTTEE---EEEEEE-E-TTCEEEEETT--E-EEEEEECCCSSCCSSCCEEEEEE
T ss_pred             EcccceeecCcccccCccceEEEEECCCCeE---EeeecC-C-CcccccCCCC--e-EEEEEecccccccccccccEEEe
Confidence                              5688888865432   122333 3 7889999998  4 566665442       4455555


Q ss_pred             cCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecC--------CcEEEEEEeCCceeeeeeecc
Q 036510          134 RADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCD--------NTVKVWKLYNGIWKMDCFPAL  205 (288)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~~~  205 (288)
                      . .+...  ... .+ ..+..+  +|++              +.|+..+.+        ..|.+||  ++.    .....
T Consensus       206 d-~~~~~--~l~-~~-~~~~~~--spdg--------------~~l~~~~~~~~~~~~~~~~l~~~d--~~~----~~~l~  258 (347)
T 2gop_A          206 E-DGKEE--KMF-EK-VSFYAV--DSDG--------------ERILLYGKPEKKYMSEHNKLYIYD--GKE----VMGIL  258 (347)
T ss_dssp             E-TTEEE--EEE-EE-ESEEEE--EECS--------------SCEEEEECCSSSCCCSSCEEEEEC--SSC----EEESS
T ss_pred             C-CCceE--Eec-cC-cceeeE--CCCC--------------CEEEEEEccccCCccccceEEEEC--CCc----eEecc
Confidence            4 32221  111 12 334443  7776              455554433        3577777  432    22233


Q ss_pred             ccCCcceEE-EEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcE-E
Q 036510          206 QMHTDWVRD-VAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNV-T  283 (288)
Q Consensus       206 ~~h~~~V~~-v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v-~  283 (288)
                      .+|...+.. +.|+ +    + ++++++.|+.+++| +. .+..   ..+......|.+++|+|  .++++++.+++. +
T Consensus       259 ~~~~~~~~~~~~~s-d----g-~~~~~~~~~~~~l~-~~-~g~~---~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~  325 (347)
T 2gop_A          259 DEVDRGVGQAKIKD-G----K-VYFTLFEEGSVNLY-IW-DGEI---KPIAKGRHWIMGFDVDE--IVVYLKETATRLRE  325 (347)
T ss_dssp             TTCCSEEEEEEEET-T----E-EEEEEEETTEEEEE-EE-SSSE---EEEECSSSEEEEEEESS--SEEEEEECSSSCCE
T ss_pred             ccCCcccCCccEEc-C----c-EEEEEecCCcEEEE-Ec-CCce---EEEecCCCeEEeeeeeC--cEEEEEcCCCChHH
Confidence            456677886 8998 6    3 78899999999999 87 3221   23333456789999999  677777777665 7


Q ss_pred             EeEc
Q 036510          284 LWEE  287 (288)
Q Consensus       284 ~w~~  287 (288)
                      ||..
T Consensus       326 l~~~  329 (347)
T 2gop_A          326 LFTW  329 (347)
T ss_dssp             EEEE
T ss_pred             heEe
Confidence            7753

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.60  E-value=6.8e-14  Score=119.77  Aligned_cols=209  Identities=7%  Similarity=-0.040  Sum_probs=126.5

Q ss_pred             ceEEEEEcCCCCEE-EEeeCCCcEEEEEeCCCCceeeEEEec-c-----ccCeEEEEecCCCCCCEEEEeeCC-------
Q 036510           13 TVHDVAMDYYGKRL-ATASSDYSIKIIGVGNNTSQHLAKLSG-H-----KGAVWEVAWAHPKFGSILASCSFD-------   78 (288)
Q Consensus        13 ~v~~~~~s~~g~~l-~s~~~d~~i~lwd~~~~~~~~~~~~~~-h-----~~~v~~~~~~~~~~~~~l~s~s~d-------   78 (288)
                      .+..++|+|+|+++ +++..++.|.+||....  +.+..+.. +     ...+..++|+++  |++|++++.+       
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~--~~~~~~~~~~~~~~~~~~~~~~~~spd--g~~l~~~~~~~~~~~~~  119 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC--KNTFHANLSSVPGEVGRSMYSFAISPD--GKEVYATVNPTQRLNDH  119 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEEEEESCCSTTEEEECSSCEEECTT--SSEEEEEEEEEEECSSC
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCC--cEEEEEEcccccccccccccceEECCC--CCEEEEEcccccccccc
Confidence            56788999999865 55667899999998543  44555542 2     233678899865  8888888865       


Q ss_pred             -----CcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccC---C-
Q 036510           79 -----GTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAH---P-  149 (288)
Q Consensus        79 -----~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~---~-  149 (288)
                           +.|.+||+.++........+. +...+.+++|+|++  .+++ ++  +.|.+||..++.....  .....   + 
T Consensus       120 ~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg--~l~~-~~--~~i~~~d~~~~~~~~~--~~~~~~~~~~  191 (349)
T 1jmx_B          120 YVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDG--SLYV-AG--PDIYKMDVKTGKYTVA--LPLRNWNRKG  191 (349)
T ss_dssp             EEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTS--CEEE-ES--SSEEEECTTTCCEEEE--ECSTTCCCTT
T ss_pred             cccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCC--cEEE-cc--CcEEEEeCCCCceecc--ccccccCCcc
Confidence                 999999987643221222333 33468899999985  4343 43  3499999876532211  11110   0 


Q ss_pred             ---------------C----CeeEEEeCCCCCCC------------------------------ceecccccC-CCceeE
Q 036510          150 ---------------V----GVTSVSWAPSTAPG------------------------------ALVGSGFLD-PVQKLC  179 (288)
Q Consensus       150 ---------------~----~v~~i~~~p~~~~~------------------------------~~~~~~~~~-~~~~l~  179 (288)
                                     .    ....+.+++++...                              ......+.. ++++++
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~  271 (349)
T 1jmx_B          192 YSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY  271 (349)
T ss_dssp             BCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEE
T ss_pred             ccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEE
Confidence                           0    11223333322100                              001112223 456777


Q ss_pred             EeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510          180 SGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR  244 (288)
Q Consensus       180 s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~  244 (288)
                      ++  ++.|.+||+.++.    .+..+.. ...+.+++|+|++    ++|++++.++.|++||+..
T Consensus       272 ~~--~~~v~~~d~~~~~----~~~~~~~-~~~~~~~~~s~dg----~~l~~~~~~~~v~v~d~~~  325 (349)
T 1jmx_B          272 GV--LNRLAKYDLKQRK----LIKAANL-DHTYYCVAFDKKG----DKLYLGGTFNDLAVFNPDT  325 (349)
T ss_dssp             EE--ESEEEEEETTTTE----EEEEEEC-SSCCCEEEECSSS----SCEEEESBSSEEEEEETTT
T ss_pred             EE--cCeEEEEECccCe----EEEEEcC-CCCccceEECCCC----CEEEEecCCCeEEEEeccc
Confidence            66  7899999987763    2222222 2346789999984    5677788899999999864

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.60  E-value=2.3e-13  Score=129.08  Aligned_cols=239  Identities=14%  Similarity=0.200  Sum_probs=142.2

Q ss_pred             EEEEEcCCCCEEEEeeCC---------CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510           15 HDVAMDYYGKRLATASSD---------YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus        15 ~~~~~s~~g~~l~s~~~d---------~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      ..++|||||++|+.++.+         +.+.+||+..+  + +..+..|...+...+|||+  |+.|+.++ |+.|.+|+
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~--~-~~~l~~~~~~~~~~~~SPd--G~~la~~~-~~~i~~~~  138 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR--Q-LITEERIPNNTQWVTWSPV--GHKLAYVW-NNDIYVKI  138 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT--E-ECCSSCCCTTEEEEEECSS--TTCEEEEE-TTEEEEES
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCC--c-EEEcccCCCcceeeEECCC--CCEEEEEE-CCeEEEEE
Confidence            347889999999999887         45569998643  2 3456778888999999975  88999885 68999999


Q ss_pred             cCCCCceEEeEEeecCCCc-----------------eeEEEeccCCCCeEEEEEeCCC----------------------
Q 036510           86 EGNSNEWIKDHVFEDHKSS-----------------VNSIDWAPHELGLCLACGSSDG----------------------  126 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~-----------------v~~l~~~p~~~~~~l~sg~~d~----------------------  126 (288)
                      ...+...  ..+..++...                 ..++.|+||  +..||.++.|.                      
T Consensus       139 ~~~~~~~--~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpD--g~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~  214 (740)
T 4a5s_A          139 EPNLPSY--RITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPN--GTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTV  214 (740)
T ss_dssp             STTSCCE--ECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTT--SSEEEEEEEECTTCCEEEEEECCSTTCSSCEEE
T ss_pred             CCCCceE--EEcCCCCccceecCcccccccchhcCCCcceEECCC--CCEEEEEEEcccCCceEEEEeecCCCCCCCcce
Confidence            8765421  1122222222                 235899998  56666664332                      


Q ss_pred             --------------cEEEEeecC---CCCeeeEEeec-----cCCCCeeEEEeCCCCCCCceecccccCCCceeEEe---
Q 036510          127 --------------NISVFTARA---DGGWDTSRIDQ-----AHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSG---  181 (288)
Q Consensus       127 --------------~i~i~d~~~---~~~~~~~~~~~-----~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~---  181 (288)
                                    .|++||+..   +..........     +|...+.++.|+|++              +.++..   
T Consensus       215 ~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg--------------~~~~~~~~r  280 (740)
T 4a5s_A          215 RVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQE--------------RISLQWLRR  280 (740)
T ss_dssp             EEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETT--------------EEEEEEEES
T ss_pred             eecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCC--------------eEEEEEeCC
Confidence                          366666655   32111111111     255668889999987              433332   


Q ss_pred             -ecCCcEEEEEEeCCceeeeee--ecc--ccCCcceE-----EEEecCCCCCCCcEEE-EEeC-CC--cEEEEEeecCCC
Q 036510          182 -GCDNTVKVWKLYNGIWKMDCF--PAL--QMHTDWVR-----DVAWAPNLGLPKSTIA-SASE-DG--KVIIWTVAREGD  247 (288)
Q Consensus       182 -~~d~~i~iwd~~~~~~~~~~~--~~~--~~h~~~V~-----~v~~sp~~~~~~~~l~-s~s~-D~--~i~iw~~~~~~~  247 (288)
                       +.+..|.+||+.++...-.+.  ..+  .+|..+|.     ++.|+||+    +.|+ ..+. ++  .|.+|++.... 
T Consensus       281 ~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG----~~l~~~~s~~~G~~~l~~~~~~~~~-  355 (740)
T 4a5s_A          281 IQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG----NSFYKIISNEEGYRHICYFQIDKKD-  355 (740)
T ss_dssp             STTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS----SEEEEEEECTTSCEEEEEEETTCSS-
T ss_pred             CCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCC----CEEEEEEEcCCCceEEEEEECCCCc-
Confidence             223469999998874100011  122  45666665     78999985    5565 6654 44  56667654321 


Q ss_pred             cccceEeeccccCeEEEEeecCCCEEEEEeCC-----CcEEEeE
Q 036510          248 QWEGKVLHDFKTPVYRVSWSLTGNILAVADGN-----NNVTLWE  286 (288)
Q Consensus       248 ~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d-----~~v~~w~  286 (288)
                         ...+....-.+..+. .+||+.|+..+..     +..+||.
T Consensus       356 ---~~~lT~g~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~  395 (740)
T 4a5s_A          356 ---CTFITKGTWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYK  395 (740)
T ss_dssp             ---CEESCCSSSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEE
T ss_pred             ---eEecccCCEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEE
Confidence               123333233454443 2557665544432     4456664

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.59  E-value=1.1e-13  Score=130.34  Aligned_cols=245  Identities=7%  Similarity=-0.078  Sum_probs=150.3

Q ss_pred             ccccccceEEEEEcCCCCEEE-----EeeCCCcEEEEEeCCCCceeeEEEeccccCe--EEEEecCCCCCCEEEEeeCCC
Q 036510            7 ETGHEDTVHDVAMDYYGKRLA-----TASSDYSIKIIGVGNNTSQHLAKLSGHKGAV--WEVAWAHPKFGSILASCSFDG   79 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~~l~-----s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v--~~~~~~~~~~~~~l~s~s~d~   79 (288)
                      ..+|+..+.+++|||||++||     +|+.+.+|++||+..+.  .+.  ..+...+  ..++|+++  |+.|+.++.|.
T Consensus       116 a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~--~~~--~~~~~~~~~~~~~wspD--g~~l~~~~~d~  189 (695)
T 2bkl_A          116 SKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGE--WSK--VDVIEGGKYATPKWTPD--SKGFYYEWLPT  189 (695)
T ss_dssp             SSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCC--BCS--SCCBSCCTTCCCEECTT--SSEEEEEECCC
T ss_pred             ccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCC--CcC--CcccCcccccceEEecC--CCEEEEEEecC
Confidence            346777888999999999988     56667899999996543  220  1122222  57899875  88999999887


Q ss_pred             c-------------EEEeecCCCCce-EEeEEeecCCCceeEEEeccCCCCeEEEEEeCCC----cEEEEeecCCCCeee
Q 036510           80 T-------------VIIWKEGNSNEW-IKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDG----NISVFTARADGGWDT  141 (288)
Q Consensus        80 ~-------------v~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~----~i~i~d~~~~~~~~~  141 (288)
                      .             |++|++.++..- .++.....|...+.++.|+|++  .+++..+.++    .|++++...+ .+. 
T Consensus       190 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG--~~l~~~~~~~~~~~~l~~~~~~~~-~~~-  265 (695)
T 2bkl_A          190 DPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG--KYLFVYILRGWSENDVYWKRPGEK-DFR-  265 (695)
T ss_dssp             CTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTS--CCEEEEEEETTTEEEEEEECTTCS-SCE-
T ss_pred             CCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCC--CEEEEEEeCCCCceEEEEEcCCCC-ceE-
Confidence            6             999998765421 1222223455678899999984  5555554444    5555543222 222 


Q ss_pred             EEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEee---cCCcEEEEEEeCCceeeeeeeccccC--CcceEEEE
Q 036510          142 SRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGG---CDNTVKVWKLYNGIWKMDCFPALQMH--TDWVRDVA  216 (288)
Q Consensus       142 ~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~h--~~~V~~v~  216 (288)
                        ....+...+....| |++              .+++++.   .+..|.+||+.++...  ....+..|  ...|..+.
T Consensus       266 --~l~~~~~~~~~~~~-~~g--------------~l~~~s~~~~~~~~l~~~d~~~~~~~--~~~~l~~~~~~~~l~~~~  326 (695)
T 2bkl_A          266 --LLVKGVGAKYEVHA-WKD--------------RFYVLTDEGAPRQRVFEVDPAKPARA--SWKEIVPEDSSASLLSVS  326 (695)
T ss_dssp             --EEEECSSCCEEEEE-ETT--------------EEEEEECTTCTTCEEEEEBTTBCSGG--GCEEEECCCSSCEEEEEE
T ss_pred             --EeecCCCceEEEEe-cCC--------------cEEEEECCCCCCCEEEEEeCCCCCcc--CCeEEecCCCCCeEEEEE
Confidence              22233334455555 444              3333333   3567888987654210  01122222  44588888


Q ss_pred             ecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeecc-ccCeEEEEeecCCCEEEEEe----CCCcEEEeEc
Q 036510          217 WAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDF-KTPVYRVSWSLTGNILAVAD----GNNNVTLWEE  287 (288)
Q Consensus       217 ~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~-~~~i~~~~~spdg~~l~s~~----~d~~v~~w~~  287 (288)
                      |+.     +.++++...|+..++|.+......  ...+..+ ...+..++++||++.++...    .+++|.+||+
T Consensus       327 ~~~-----~~lv~~~~~dg~~~l~~~~~~g~~--~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~  395 (695)
T 2bkl_A          327 IVG-----GHLSLEYLKDATSEVRVATLKGKP--VRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSV  395 (695)
T ss_dssp             EET-----TEEEEEEEETTEEEEEEEETTCCE--EEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEET
T ss_pred             EEC-----CEEEEEEEECCEEEEEEEeCCCCe--eEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence            883     368889999999999987642211  1222222 34577889999998777332    3478999985

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.59  E-value=4.5e-12  Score=108.23  Aligned_cols=237  Identities=9%  Similarity=0.031  Sum_probs=148.4

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC----CcEEEe
Q 036510            9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD----GTVIIW   84 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d----~~v~iw   84 (288)
                      ++...+.+++|+++|++++++..++.|.+||.....  .......+...+.+++++++  ++++++...+    +.|.+|
T Consensus        42 ~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~i~~~~d--g~l~v~~~~~~~~~~~i~~~  117 (333)
T 2dg1_A           42 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE--IKRPFVSHKANPAAIKIHKD--GRLFVCYLGDFKSTGGIFAA  117 (333)
T ss_dssp             SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC--EEEEEECSSSSEEEEEECTT--SCEEEEECTTSSSCCEEEEE
T ss_pred             ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc--EEEEeeCCCCCcceEEECCC--CcEEEEeCCCCCCCceEEEE
Confidence            455567889999999988888889999999875432  22223356678999999754  7788877766    789999


Q ss_pred             ecCCCCceEEeEEee--cCCCceeEEEeccCCCCeEEEEEeC------CCcEEEEeecCCCCeeeEEeeccCCCCeeEEE
Q 036510           85 KEGNSNEWIKDHVFE--DHKSSVNSIDWAPHELGLCLACGSS------DGNISVFTARADGGWDTSRIDQAHPVGVTSVS  156 (288)
Q Consensus        85 d~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~~~l~sg~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~  156 (288)
                      |.......   ..+.  .+...++.+.++|+  +.++++...      .+.|..++...+ ......   ........+.
T Consensus       118 d~~~~~~~---~~~~~~~~~~~~~~i~~d~~--g~l~v~~~~~~~~~~~~~l~~~~~~~~-~~~~~~---~~~~~~~~i~  188 (333)
T 2dg1_A          118 TENGDNLQ---DIIEDLSTAYCIDDMVFDSK--GGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPII---QNISVANGIA  188 (333)
T ss_dssp             CTTSCSCE---EEECSSSSCCCEEEEEECTT--SCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEE---EEESSEEEEE
T ss_pred             eCCCCEEE---EEEccCccCCcccceEECCC--CCEEEEeccccccCCCceEEEEeCCCC-EEEEee---cCCCcccceE
Confidence            98654321   1121  23456899999997  555555432      234444443321 222111   1123467889


Q ss_pred             eCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeC-Ccee--e--eeeeccccCCcceEEEEecCCCCCCCcEEEEE
Q 036510          157 WAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYN-GIWK--M--DCFPALQMHTDWVRDVAWAPNLGLPKSTIASA  231 (288)
Q Consensus       157 ~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~--~--~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~  231 (288)
                      |+|++.             .++++.+.++.|.+||+.+ +...  +  .....+.++ ..+..+.+++++    .+.++.
T Consensus       189 ~~~dg~-------------~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G----~l~v~~  250 (333)
T 2dg1_A          189 LSTDEK-------------VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDD----NLYVAM  250 (333)
T ss_dssp             ECTTSS-------------EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTC----CEEEEE
T ss_pred             ECCCCC-------------EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCC----CEEEEE
Confidence            999862             2445556678999999964 2111  0  111112223 357889999974    567777


Q ss_pred             eCCCcEEEEEeecCCCcccceEeecccc------CeEEEEeecCCCEEEEEeCCC
Q 036510          232 SEDGKVIIWTVAREGDQWEGKVLHDFKT------PVYRVSWSLTGNILAVADGNN  280 (288)
Q Consensus       232 s~D~~i~iw~~~~~~~~~~~~~~~~~~~------~i~~~~~spdg~~l~s~~~d~  280 (288)
                      ..++.|.+||.+.  ..  ...+.....      .+.+++|+|||+.|++++.++
T Consensus       251 ~~~~~v~~~d~~g--~~--~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          251 YGQGRVLVFNKRG--YP--IGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             ETTTEEEEECTTS--CE--EEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             cCCCEEEEECCCC--CE--EEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            7789999998632  11  122222221      578999999998877776653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.58  E-value=4e-13  Score=114.87  Aligned_cols=243  Identities=11%  Similarity=0.119  Sum_probs=156.6

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCc
Q 036510           12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNE   91 (288)
Q Consensus        12 ~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~   91 (288)
                      ..|.++.|++++..+++.+.++.++.|.   .  .....+.++...+.+++|+++  +++++++..++.|.+||..++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~--g~l~~~~~~~~~i~~~d~~~~~~   78 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTIT---A--EPWLEISKKGLQLEGLNFDRQ--GQLFLLDVFEGNIFKINPETKEI   78 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEE---C--EEEEEEESSCCCEEEEEECTT--SCEEEEETTTCEEEEECTTTCCE
T ss_pred             cccceeeecCCccceeEEeecccCcccc---c--ceeEEEeccCccccCcEECCC--CCEEEEECCCCEEEEEeCCCCcE
Confidence            4467788999888888888889999982   1  345667777777899999854  78888888999999999865541


Q ss_pred             eEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC----CcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCcee
Q 036510           92 WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD----GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV  167 (288)
Q Consensus        92 ~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~  167 (288)
                         ......+...+.++.++|+  +.++++...+    +.|.+||...... ........+...+..+.++|++      
T Consensus        79 ---~~~~~~~~~~~~~i~~~~d--g~l~v~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~i~~d~~g------  146 (333)
T 2dg1_A           79 ---KRPFVSHKANPAAIKIHKD--GRLFVCYLGDFKSTGGIFAATENGDNL-QDIIEDLSTAYCIDDMVFDSKG------  146 (333)
T ss_dssp             ---EEEEECSSSSEEEEEECTT--SCEEEEECTTSSSCCEEEEECTTSCSC-EEEECSSSSCCCEEEEEECTTS------
T ss_pred             ---EEEeeCCCCCcceEEECCC--CcEEEEeCCCCCCCceEEEEeCCCCEE-EEEEccCccCCcccceEECCCC------
Confidence               1222245678999999988  5666666555    6899998765432 1111111234568889999876      


Q ss_pred             cccccCCCceeEEeec----CCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEee
Q 036510          168 GSGFLDPVQKLCSGGC----DNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA  243 (288)
Q Consensus       168 ~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~  243 (288)
                              +++++...    +....||.+........   .+..+...+..+.|+|++   ..+.++.+.++.|.+|++.
T Consensus       147 --------~l~v~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~i~~~~dg---~~l~v~~~~~~~i~~~d~~  212 (333)
T 2dg1_A          147 --------GFYFTDFRGYSTNPLGGVYYVSPDFRTVT---PIIQNISVANGIALSTDE---KVLWVTETTANRLHRIALE  212 (333)
T ss_dssp             --------CEEEEECCCBTTBCCEEEEEECTTSCCEE---EEEEEESSEEEEEECTTS---SEEEEEEGGGTEEEEEEEC
T ss_pred             --------CEEEEeccccccCCCceEEEEeCCCCEEE---EeecCCCcccceEECCCC---CEEEEEeCCCCeEEEEEec
Confidence                    44554432    12345555543211111   111222347889999984   1244566678899999986


Q ss_pred             cCCCccc---ceEeeccc--cCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          244 REGDQWE---GKVLHDFK--TPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       244 ~~~~~~~---~~~~~~~~--~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      .......   ........  ..+..++++++|+++++...++.|.+|+.
T Consensus       213 ~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~  261 (333)
T 2dg1_A          213 DDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK  261 (333)
T ss_dssp             TTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             CCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence            3211110   01111111  35778999999998888878899999973

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.56  E-value=3.4e-14  Score=123.91  Aligned_cols=231  Identities=10%  Similarity=0.039  Sum_probs=136.8

Q ss_pred             eEEEEEcCCCCEEEEeeCC---CcEEEEEeCCCCceeeEEEeccccCe-EEEEecCCCCCCEEEEeeCCCcEEEeecCCC
Q 036510           14 VHDVAMDYYGKRLATASSD---YSIKIIGVGNNTSQHLAKLSGHKGAV-WEVAWAHPKFGSILASCSFDGTVIIWKEGNS   89 (288)
Q Consensus        14 v~~~~~s~~g~~l~s~~~d---~~i~lwd~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~   89 (288)
                      +..++|+|||++|+.....   ..+.+|++..+  +. ..+..+.... ..+.|+++  |+.|+.++.++.+.+|++..+
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~--~~-~~l~~~~~~~~~~~~~spd--g~~l~~~~~~~~l~~~d~~~~  112 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ--QA-VQLTEGKGDNTFGGFISTD--ERAFFYVKNELNLMKVDLETL  112 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT--EE-EECCCSSCBCTTTCEECTT--SSEEEEEETTTEEEEEETTTC
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCC--cE-EEeecCCCCccccceECCC--CCEEEEEEcCCcEEEEECCCC
Confidence            6678899999998776543   35777776543  32 2333333332 23678865  899999999999999998765


Q ss_pred             CceEEeEEeecCCCceeE-------------------EEeccCCCCeEEEEE-----eCCCcEEEEeecCCCCeeeEEee
Q 036510           90 NEWIKDHVFEDHKSSVNS-------------------IDWAPHELGLCLACG-----SSDGNISVFTARADGGWDTSRID  145 (288)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~-------------------l~~~p~~~~~~l~sg-----~~d~~i~i~d~~~~~~~~~~~~~  145 (288)
                      ..   ......+......                   +.|+|++  ..++..     ..+..|.+||+..+.. ..  . 
T Consensus       113 ~~---~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg--~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~--~-  183 (396)
T 3c5m_A          113 EE---QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT--SWEKFAEFYHTNPTCRLIKVDIETGEL-EV--I-  183 (396)
T ss_dssp             CE---EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC--SHHHHHHHHHTCCCEEEEEEETTTCCE-EE--E-
T ss_pred             Cc---EEEEecccccCCCCCEEEeccCCccccccccccccCCCC--cceeeeeeccCCCcceEEEEECCCCcE-Ee--e-
Confidence            42   1222223322222                   2455653  222222     3456788898875432 11  1 


Q ss_pred             ccCCCCeeEEEeCC-CCCCCceecccccCCCceeEEeecC------CcEEEEEEeCCceeeeeeeccccC--CcceEEEE
Q 036510          146 QAHPVGVTSVSWAP-STAPGALVGSGFLDPVQKLCSGGCD------NTVKVWKLYNGIWKMDCFPALQMH--TDWVRDVA  216 (288)
Q Consensus       146 ~~~~~~v~~i~~~p-~~~~~~~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~h--~~~V~~v~  216 (288)
                      ..+...+..+.|+| ++              +.|+..+.+      ..|.+||+..+.     ...+..+  ...+..+.
T Consensus       184 ~~~~~~~~~~~~sp~dg--------------~~l~~~~~~~~~~~~~~l~~~d~~~~~-----~~~l~~~~~~~~~~~~~  244 (396)
T 3c5m_A          184 HQDTAWLGHPIYRPFDD--------------STVGFCHEGPHDLVDARMWLVNEDGSN-----VRKIKEHAEGESCTHEF  244 (396)
T ss_dssp             EEESSCEEEEEEETTEE--------------EEEEEEECSCSSSCSCCCEEEETTSCC-----CEESSCCCTTEEEEEEE
T ss_pred             ccCCcccccceECCCCC--------------CEEEEEecCCCCCCCceEEEEECCCCc-----eeEeeccCCCccccceE
Confidence            23456688999999 54              434433332      357777765432     1112222  23588899


Q ss_pred             ecCCCCCCCcEEEEEeCC-----CcEEEEEeecCCCcccceEeeccccCeEEEEeec-CCCEEEEEe-------------
Q 036510          217 WAPNLGLPKSTIASASED-----GKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSL-TGNILAVAD-------------  277 (288)
Q Consensus       217 ~sp~~~~~~~~l~s~s~D-----~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~sp-dg~~l~s~~-------------  277 (288)
                      |+|++    ++|+.++.+     +.|++||+....    ...+..... .. +.|+| ||+++++++             
T Consensus       245 ~spdg----~~l~~~~~~~~~~~~~l~~~d~~~g~----~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~  314 (396)
T 3c5m_A          245 WIPDG----SAMAYVSYFKGQTDRVIYKANPETLE----NEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSY  314 (396)
T ss_dssp             ECTTS----SCEEEEEEETTTCCEEEEEECTTTCC----EEEEEECCS-EE-EEEECSSSSEEEEEECCC----------
T ss_pred             ECCCC----CEEEEEecCCCCccceEEEEECCCCC----eEEeeeCCC-CC-CCccCCCCceEEEecCCcceeecccccc
Confidence            99985    557666544     449999876432    122222222 23 89999 999988765             


Q ss_pred             ---CCCcEEEeEc
Q 036510          278 ---GNNNVTLWEE  287 (288)
Q Consensus       278 ---~d~~v~~w~~  287 (288)
                         .+..|.+||.
T Consensus       315 ~~~~~~~i~~~d~  327 (396)
T 3c5m_A          315 NIENDPFLYVLNT  327 (396)
T ss_dssp             CCCCCCEEEEEET
T ss_pred             ccCCCCcEEEEec
Confidence               3468999985

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.56  E-value=5.2e-14  Score=122.74  Aligned_cols=230  Identities=7%  Similarity=0.004  Sum_probs=136.0

Q ss_pred             EEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEE---E----------------EecCCCCCCEEEEe-
Q 036510           16 DVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWE---V----------------AWAHPKFGSILASC-   75 (288)
Q Consensus        16 ~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~---~----------------~~~~~~~~~~l~s~-   75 (288)
                      .+.|+|||++|+.++.++.+++|++..+..  ...+..+......   +                .|++  +++.++.. 
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp--dg~~~~~~~  160 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEE--QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP--LTSWEKFAE  160 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCE--EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC--CCSHHHHHH
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCc--EEEEecccccCCCCCEEEeccCCccccccccccccCC--CCcceeeee
Confidence            367999999999999999999999865432  2223323321111   2                3343  24554433 


Q ss_pred             ----eCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC------CcEEEEeecCCCCeeeEEee
Q 036510           76 ----SFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD------GNISVFTARADGGWDTSRID  145 (288)
Q Consensus        76 ----s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d------~~i~i~d~~~~~~~~~~~~~  145 (288)
                          ..+..|.+||+.++..    ..+..+...+..+.|+|++ +..++..+.+      ..|.+|++.... ..  ...
T Consensus       161 ~~~~~~~~~l~~~d~~~g~~----~~~~~~~~~~~~~~~sp~d-g~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~--~l~  232 (396)
T 3c5m_A          161 FYHTNPTCRLIKVDIETGEL----EVIHQDTAWLGHPIYRPFD-DSTVGFCHEGPHDLVDARMWLVNEDGSN-VR--KIK  232 (396)
T ss_dssp             HHHTCCCEEEEEEETTTCCE----EEEEEESSCEEEEEEETTE-EEEEEEEECSCSSSCSCCCEEEETTSCC-CE--ESS
T ss_pred             eccCCCcceEEEEECCCCcE----EeeccCCcccccceECCCC-CCEEEEEecCCCCCCCceEEEEECCCCc-ee--Eee
Confidence                4567899999876542    1222455678999999932 4434444333      357777765332 11  111


Q ss_pred             ccC-CCCeeEEEeCCCCCCCceecccccCCCceeEEeecC-----CcEEEEEEeCCceeeeeeeccccCCcceEEEEecC
Q 036510          146 QAH-PVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCD-----NTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAP  219 (288)
Q Consensus       146 ~~~-~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp  219 (288)
                      ... ...+..+.|+|++              +.|+..+.+     +.|.+||+.++..  +.+..+.+    .. +.|+|
T Consensus       233 ~~~~~~~~~~~~~spdg--------------~~l~~~~~~~~~~~~~l~~~d~~~g~~--~~l~~~~~----~~-~~~s~  291 (396)
T 3c5m_A          233 EHAEGESCTHEFWIPDG--------------SAMAYVSYFKGQTDRVIYKANPETLEN--EEVMVMPP----CS-HLMSN  291 (396)
T ss_dssp             CCCTTEEEEEEEECTTS--------------SCEEEEEEETTTCCEEEEEECTTTCCE--EEEEECCS----EE-EEEEC
T ss_pred             ccCCCccccceEECCCC--------------CEEEEEecCCCCccceEEEEECCCCCe--EEeeeCCC----CC-CCccC
Confidence            211 2247788999987              445544333     3499999876532  12222221    23 88999


Q ss_pred             -CCCCCCcEEEEEe----------------CCCcEEEEEeecCCCcccceEeecccc-----------CeEEEEeecCCC
Q 036510          220 -NLGLPKSTIASAS----------------EDGKVIIWTVAREGDQWEGKVLHDFKT-----------PVYRVSWSLTGN  271 (288)
Q Consensus       220 -~~~~~~~~l~s~s----------------~D~~i~iw~~~~~~~~~~~~~~~~~~~-----------~i~~~~~spdg~  271 (288)
                       ++    ++++.++                .+..|.+||+....    ...+..+..           .+..++|+|||+
T Consensus       292 ~dg----~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~  363 (396)
T 3c5m_A          292 FDG----SLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS----AQKLCKHSTSWDVLDGDRQITHPHPSFTPNDD  363 (396)
T ss_dssp             SSS----SEEEEEECCC----------CCCCCCEEEEEETTTTB----CCEEEECCCCCCCBTTBSSTTCCCCEECTTSS
T ss_pred             CCC----ceEEEecCCcceeeccccccccCCCCcEEEEecccCc----eEEccCCCCccccccccccCCCCCceEccCCC
Confidence             84    5676654                34689999876432    122233222           256689999999


Q ss_pred             EEEEEeC-CCcEEEeE
Q 036510          272 ILAVADG-NNNVTLWE  286 (288)
Q Consensus       272 ~l~s~~~-d~~v~~w~  286 (288)
                      .|+.++. ++...||.
T Consensus       364 ~l~~~s~~~~~~~l~~  379 (396)
T 3c5m_A          364 GVLFTSDFEGVPAIYI  379 (396)
T ss_dssp             EEEEEECTTSSCEEEE
T ss_pred             eEEEEecCCCCceEEE
Confidence            9887765 56666765

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.55  E-value=3.2e-12  Score=105.73  Aligned_cols=236  Identities=10%  Similarity=0.034  Sum_probs=151.3

Q ss_pred             ceEEEEEcCCCCEEE-EeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCc
Q 036510           13 TVHDVAMDYYGKRLA-TASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNE   91 (288)
Q Consensus        13 ~v~~~~~s~~g~~l~-s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~   91 (288)
                      ...+++++++|++++ +...++.|..|+.....  .......+...+.++++.++  +.++++.. ++.|.+|+......
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~p~~i~~~~~--g~l~v~~~-~~~i~~~d~~~~~~   99 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG--TTVLPFNGLYQPQGLAVDGA--GTVYVTDF-NNRVVTLAAGSNNQ   99 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-------EECCCCSCCSCCCEEECTT--CCEEEEET-TTEEEEECTTCSCC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcc--cceEeeCCcCCcceeEECCC--CCEEEEcC-CCEEEEEeCCCceE
Confidence            667899999999877 55778889998764321  11111233345778998753  67777666 88999998754321


Q ss_pred             eEEeEEee-cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceeccc
Q 036510           92 WIKDHVFE-DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG  170 (288)
Q Consensus        92 ~~~~~~~~-~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~  170 (288)
                          ..+. .....+.++.+.|+  +.++++...++.|.+|+......   .............+.++|++         
T Consensus       100 ----~~~~~~~~~~p~~i~~~~~--g~l~v~~~~~~~i~~~~~~~~~~---~~~~~~~~~~p~~i~~~~~g---------  161 (270)
T 1rwi_B          100 ----TVLPFDGLNYPEGLAVDTQ--GAVYVADRGNNRVVKLAAGSKTQ---TVLPFTGLNDPDGVAVDNSG---------  161 (270)
T ss_dssp             ----EECCCCSCSSEEEEEECTT--CCEEEEEGGGTEEEEECTTCCSC---EECCCCSCCSCCCEEECTTC---------
T ss_pred             ----eeeecCCcCCCcceEECCC--CCEEEEECCCCEEEEEECCCcee---EeeccccCCCceeEEEeCCC---------
Confidence                1122 22256889999987  55667666778898986543221   11111122345667777765         


Q ss_pred             ccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCccc
Q 036510          171 FLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWE  250 (288)
Q Consensus       171 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~  250 (288)
                           +++++...++.|.+||......    ......+...+.++.+.|++    .++++...++.|.+|+......   
T Consensus       162 -----~l~v~~~~~~~i~~~~~~~~~~----~~~~~~~~~~p~~i~~d~~g----~l~v~~~~~~~v~~~~~~~~~~---  225 (270)
T 1rwi_B          162 -----NVYVTDTDNNRVVKLEAESNNQ----VVLPFTDITAPWGIAVDEAG----TVYVTEHNTNQVVKLLAGSTTS---  225 (270)
T ss_dssp             -----CEEEEEGGGTEEEEECTTTCCE----EECCCSSCCSEEEEEECTTC----CEEEEETTTSCEEEECTTCSCC---
T ss_pred             -----CEEEEECCCCEEEEEecCCCce----EeecccCCCCceEEEECCCC----CEEEEECCCCcEEEEcCCCCcc---
Confidence                 5666666678899999765421    11112233557899999873    5677777788999998753211   


Q ss_pred             ceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          251 GKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       251 ~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ..........+.+++++|+|+++++...+++|++++.
T Consensus       226 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~  262 (270)
T 1rwi_B          226 TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  262 (270)
T ss_dssp             EECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             eeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcC
Confidence            1111111246889999999998888888999999974

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.49  E-value=1.4e-11  Score=105.66  Aligned_cols=219  Identities=12%  Similarity=0.079  Sum_probs=131.8

Q ss_pred             ccceEEEEEcCCCCEEEEee---------CCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC---
Q 036510           11 EDTVHDVAMDYYGKRLATAS---------SDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD---   78 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~---------~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---   78 (288)
                      -..+...++  ||++|+-..         .++.+.+|++..+.   ...+    ..+..++|+|+  |+.|+.++.+   
T Consensus        14 ~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~---~~~l----~~~~~~~~SpD--g~~la~~~~~~~~   82 (347)
T 2gop_A           14 FAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNA---RRFI----ENATMPRISPD--GKKIAFMRANEEK   82 (347)
T ss_dssp             SCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCC---EEEE----ESCEEEEECTT--SSEEEEEEEETTT
T ss_pred             eEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCc---eEEc----ccCCCeEECCC--CCEEEEEEeccCC
Confidence            356677778  898877642         35678888876543   2233    46788999975  8888887754   


Q ss_pred             Cc--EEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeC---------------------------CCcEE
Q 036510           79 GT--VIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSS---------------------------DGNIS  129 (288)
Q Consensus        79 ~~--v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~---------------------------d~~i~  129 (288)
                      +.  |.+|++..+.   ... +..+.. +..+.|+|+  +..++.++.                           ...|.
T Consensus        83 ~~~~l~~~~~~~g~---~~~-l~~~~~-~~~~~wspd--g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  155 (347)
T 2gop_A           83 KVSEIWVADLETLS---SKK-ILEAKN-IRSLEWNED--SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFW  155 (347)
T ss_dssp             TEEEEEEEETTTTE---EEE-EEEESE-EEEEEECTT--SSEEEEEEECCCC---------CCCC---------CEEEEE
T ss_pred             CcceEEEEECCCCc---eEE-EEcCCC-ccceeECCC--CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEE
Confidence            34  6666765443   112 222233 899999998  444555542                           24688


Q ss_pred             EEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecC------C-cEEEEEEeCCceeeeee
Q 036510          130 VFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCD------N-TVKVWKLYNGIWKMDCF  202 (288)
Q Consensus       130 i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d------~-~i~iwd~~~~~~~~~~~  202 (288)
                      +||+..+......   .. + .+..+.|+|++               +++++..+      . ...||.+.++.  .+  
T Consensus       156 ~~d~~~~~~~~~l---~~-~-~~~~~~~spdg---------------~~~~~~~~~~~~~~~~~~~l~~~d~~~--~~--  211 (347)
T 2gop_A          156 IFDTESEEVIEEF---EK-P-RFSSGIWHRDK---------------IVVNVPHREIIPQYFKFWDIYIWEDGK--EE--  211 (347)
T ss_dssp             EEETTTTEEEEEE---EE-E-TTCEEEEETTE---------------EEEEEECCCSSCCSSCCEEEEEEETTE--EE--
T ss_pred             EEECCCCeEEeee---cC-C-CcccccCCCCe---------------EEEEEecccccccccccccEEEeCCCc--eE--
Confidence            8887654210111   11 2 67788999874               24444333      1 45566555432  11  


Q ss_pred             eccccCCcceEEEEecCCCCCCCcEEEEEeCCC--------cEEEEEeecCCCcccceEeeccccCeEE-EEeecCCCEE
Q 036510          203 PALQMHTDWVRDVAWAPNLGLPKSTIASASEDG--------KVIIWTVAREGDQWEGKVLHDFKTPVYR-VSWSLTGNIL  273 (288)
Q Consensus       203 ~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~--------~i~iw~~~~~~~~~~~~~~~~~~~~i~~-~~~spdg~~l  273 (288)
                       .+..+ ..+..+  +|++    ++|+.++.+.        .|.+|| .  +.  ...+...+...+.. +.|+ || ++
T Consensus       212 -~l~~~-~~~~~~--spdg----~~l~~~~~~~~~~~~~~~~l~~~d-~--~~--~~~l~~~~~~~~~~~~~~s-dg-~~  276 (347)
T 2gop_A          212 -KMFEK-VSFYAV--DSDG----ERILLYGKPEKKYMSEHNKLYIYD-G--KE--VMGILDEVDRGVGQAKIKD-GK-VY  276 (347)
T ss_dssp             -EEEEE-ESEEEE--EECS----SCEEEEECCSSSCCCSSCEEEEEC-S--SC--EEESSTTCCSEEEEEEEET-TE-EE
T ss_pred             -EeccC-cceeeE--CCCC----CEEEEEEccccCCccccceEEEEC-C--Cc--eEeccccCCcccCCccEEc-Cc-EE
Confidence             22223 445554  8874    5677776543        577776 2  11  11222334456776 8999 99 99


Q ss_pred             EEEeCCCcEEEeEc
Q 036510          274 AVADGNNNVTLWEE  287 (288)
Q Consensus       274 ~s~~~d~~v~~w~~  287 (288)
                      ++++.++.++|| +
T Consensus       277 ~~~~~~~~~~l~-~  289 (347)
T 2gop_A          277 FTLFEEGSVNLY-I  289 (347)
T ss_dssp             EEEEETTEEEEE-E
T ss_pred             EEEecCCcEEEE-E
Confidence            999999999999 5

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.49  E-value=2.2e-11  Score=105.81  Aligned_cols=243  Identities=10%  Similarity=0.046  Sum_probs=141.2

Q ss_pred             EEEEcCCCCEEEEee----------CCCcEEEEEeCCCCceeeEEEecc------ccCeEEEEecCCCCCCEEEEeeC--
Q 036510           16 DVAMDYYGKRLATAS----------SDYSIKIIGVGNNTSQHLAKLSGH------KGAVWEVAWAHPKFGSILASCSF--   77 (288)
Q Consensus        16 ~~~~s~~g~~l~s~~----------~d~~i~lwd~~~~~~~~~~~~~~h------~~~v~~~~~~~~~~~~~l~s~s~--   77 (288)
                      .+.|+|||++|++++          .+++|.+||..  +.+.+.++..+      ......++++++  |++|+.+..  
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~--t~~~~~~i~~~~~~~~~g~~p~~i~~spd--g~~l~v~n~~~  129 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD--KLTFEKEISLPPKRVQGLNYDGLFRQTTD--GKFIVLQNASP  129 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT--TCCEEEEEEECTTBCCBCCCGGGEEECTT--SSEEEEEEESS
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc--CCcEEEEEEcCccccccCCCcceEEECCC--CCEEEEECCCC
Confidence            789999999998886          36789999974  33455555422      233567889865  888877763  


Q ss_pred             CCcEEEeecCCCCceEEeEE-eecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEE
Q 036510           78 DGTVIIWKEGNSNEWIKDHV-FEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVS  156 (288)
Q Consensus        78 d~~v~iwd~~~~~~~~~~~~-~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~  156 (288)
                      +++|.+||+.+..   .... +..  .....+.+.|++ ...+++.+.||.+.+|+....+.... ..   +..    ..
T Consensus       130 ~~~v~v~d~~~~~---~~~~~i~~--~~~~~v~~~p~~-~~~~~~~~~dg~~~~v~~~~~g~~~~-~~---~~~----~~  195 (361)
T 2oiz_A          130 ATSIGIVDVAKGD---YVEDVTAA--AGCWSVIPQPNR-PRSFMTICGDGGLLTINLGEDGKVAS-QS---RSK----QM  195 (361)
T ss_dssp             SEEEEEEETTTTE---EEEEEGGG--TTEEEEEECTTS-SSEEEEEETTSSEEEEEECTTSSEEE-EE---ECC----CC
T ss_pred             CCeEEEEECCCCc---EEEEEecC--CCcceeEEcCCC-CeeEEEECCCCcEEEEEECCCCcEee-ec---ccc----ce
Confidence            6899999997653   2333 321  122335567775 34567788999999998865433221 10   000    01


Q ss_pred             eCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceee-eeeeccc---cCCcc----eEEEEecCCCCCCCcEE
Q 036510          157 WAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKM-DCFPALQ---MHTDW----VRDVAWAPNLGLPKSTI  228 (288)
Q Consensus       157 ~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~---~h~~~----V~~v~~sp~~~~~~~~l  228 (288)
                      |.+....   +......++..++..+.++.+.++|+..+.... .......   .+..+    ..-+.|+|+.   ...+
T Consensus       196 ~~~~~~~---~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg---~~ly  269 (361)
T 2oiz_A          196 FSVKDDP---IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRAS---GRMY  269 (361)
T ss_dssp             SCTTTSC---BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTT---TEEE
T ss_pred             EcCCCCc---eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCC---CeEE
Confidence            1221110   000011112344555678889999986532110 0000000   01111    1126889985   2344


Q ss_pred             EEEe----------CCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEcC
Q 036510          229 ASAS----------EDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEA  288 (288)
Q Consensus       229 ~s~s----------~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~~  288 (288)
                      ++.+          ..++|.+||+...+   ....+... . +..++|+|||++|+++.. ++|.|||.+
T Consensus       270 v~~~~~~~~~~~~~~~~~v~viD~~t~~---~v~~i~~~-~-p~~ia~spdg~~l~v~n~-~~v~v~D~~  333 (361)
T 2oiz_A          270 VFMHPDGKEGTHKFPAAEIWVMDTKTKQ---RVARIPGR-D-ALSMTIDQQRNLMLTLDG-GNVNVYDIS  333 (361)
T ss_dssp             EEEESSCCTTCTTCCCSEEEEEETTTTE---EEEEEECT-T-CCEEEEETTTTEEEEECS-SCEEEEECS
T ss_pred             EEEccCCCcccccCCCceEEEEECCCCc---EEEEEecC-C-eeEEEECCCCCEEEEeCC-CeEEEEECC
Confidence            4443          13479999976532   12223333 3 889999999999998886 999999953

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.48  E-value=1.3e-11  Score=117.01  Aligned_cols=247  Identities=13%  Similarity=0.034  Sum_probs=142.8

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCC-----CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCc
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSD-----YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGT   80 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d-----~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~   80 (288)
                      +..+|+..+..++|||||++|+.++.+     .+|++||+..+.  .+. ...+...+..++|++  + +.|+.++.|+.
T Consensus       157 l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~--~~~-~~~~~~~~~~~~wsp--D-~~l~~~~~~~~  230 (741)
T 1yr2_A          157 WAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGK--PLA-DELKWVKFSGLAWLG--N-DALLYSRFAEP  230 (741)
T ss_dssp             CC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCC--EEE-EEEEEEESCCCEEST--T-SEEEEEECCCC
T ss_pred             hccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC--CCC-ccCCCceeccEEEEC--C-CEEEEEEecCc
Confidence            344555578889999999998876654     469999986543  222 111222235788986  3 67777776554


Q ss_pred             --------------EEEeecCCCCce-EEeEEeecCCCceeEEEeccCCCCeEEEEEeCC-----CcEEEEeecCCC-C-
Q 036510           81 --------------VIIWKEGNSNEW-IKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD-----GNISVFTARADG-G-  138 (288)
Q Consensus        81 --------------v~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d-----~~i~i~d~~~~~-~-  138 (288)
                                    |.+|++.++..- ........+...+..+.|+|+  ++.++..+.+     ..|++||+..+. . 
T Consensus       231 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpD--G~~l~~~~~~~~~~~~~l~~~d~~~~~~~~  308 (741)
T 1yr2_A          231 KEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSD--GRWVVITSSEGTDPVNTVHVARVTNGKIGP  308 (741)
T ss_dssp             --------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT--SCEEEEEEECTTCSCCEEEEEEEETTEECC
T ss_pred             ccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCC--CCEEEEEEEccCCCcceEEEEECCCCCCcc
Confidence                          888888654321 121111223335889999998  5555555433     489999987541 1 


Q ss_pred             eeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeec----CCcEEEEEEeCCceeeeeeeccccCCcceEE
Q 036510          139 WDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC----DNTVKVWKLYNGIWKMDCFPALQMHTDWVRD  214 (288)
Q Consensus       139 ~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~  214 (288)
                      +.   ....+...+.... +|++              +.|+..+.    +..|.+||+.++..  +....+..+...+..
T Consensus       309 ~~---~l~~~~~~~~~~~-~~dg--------------~~l~~~s~~~~~~~~l~~~d~~~~~~--~~~~l~~~~~~~l~~  368 (741)
T 1yr2_A          309 VT---ALIPDLKAQWDFV-DGVG--------------DQLWFVSGDGAPLKKIVRVDLSGSTP--RFDTVVPESKDNLES  368 (741)
T ss_dssp             CE---EEECSSSSCEEEE-EEET--------------TEEEEEECTTCTTCEEEEEECSSSSC--EEEEEECCCSSEEEE
T ss_pred             cE---EecCCCCceEEEE-eccC--------------CEEEEEECCCCCCCEEEEEeCCCCcc--ccEEEecCCCCeEEE
Confidence            22   2222333333332 3555              44444433    34588888766310  111112334455777


Q ss_pred             EEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeec-cccCeEEEEeecCCCEEEEE----eCCCcEEEeEc
Q 036510          215 VAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHD-FKTPVYRVSWSLTGNILAVA----DGNNNVTLWEE  287 (288)
Q Consensus       215 v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~-~~~~i~~~~~spdg~~l~s~----~~d~~v~~w~~  287 (288)
                      +.|+.     +.++++...|+..+||........  ...+.. ....+..++++||++.|+..    ...++|.+||+
T Consensus       369 ~~~~~-----~~lv~~~~~dg~~~l~~~~~~g~~--~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~  439 (741)
T 1yr2_A          369 VGIAG-----NRLFASYIHDAKSQVLAFDLDGKP--AGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP  439 (741)
T ss_dssp             EEEEB-----TEEEEEEEETTEEEEEEEETTSCE--EEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred             EEEEC-----CEEEEEEEECCEEEEEEEeCCCCc--eeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence            88873     357888899999888877632211  122221 23568889999999866633    23478888885

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.48  E-value=1.5e-11  Score=105.39  Aligned_cols=214  Identities=14%  Similarity=0.132  Sum_probs=144.7

Q ss_pred             cccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEE---------eccccCeEEEEecCCCCCCEEEEee-CCC
Q 036510           10 HEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKL---------SGHKGAVWEVAWAHPKFGSILASCS-FDG   79 (288)
Q Consensus        10 h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~---------~~h~~~v~~~~~~~~~~~~~l~s~s-~d~   79 (288)
                      +-....+++++++|+++++...++.|+.|+.++.. ..+..+         .++......++++++ ++.++++.+ .++
T Consensus        89 ~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~-~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~-~g~lyv~d~~~~~  166 (329)
T 3fvz_A           89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE-GPLLILGRSMQPGSDQNHFCQPTDVAVEPS-TGAVFVSDGYCNS  166 (329)
T ss_dssp             TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSS-CCSEEESBTTBCCCSTTCCSSEEEEEECTT-TCCEEEEECSSCC
T ss_pred             ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCe-EEEEEecccCCCCCCccccCCCcEEEEeCC-CCeEEEEeCCCCC
Confidence            33467889999999999998889999999975431 134444         345556889999862 478888887 799


Q ss_pred             cEEEeecCCCCceEEeEEee----------cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCC
Q 036510           80 TVIIWKEGNSNEWIKDHVFE----------DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHP  149 (288)
Q Consensus        80 ~v~iwd~~~~~~~~~~~~~~----------~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~  149 (288)
                      .|++|+. ++.   ....+.          .+......++++|+. +.++++...++.|++|+..++. .........+.
T Consensus       167 ~I~~~~~-~g~---~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~-g~l~v~d~~~~~I~~~~~~~G~-~~~~~~~~~~~  240 (329)
T 3fvz_A          167 RIVQFSP-SGK---FVTQWGEESSGSSPRPGQFSVPHSLALVPHL-DQLCVADRENGRIQCFKTDTKE-FVREIKHASFG  240 (329)
T ss_dssp             EEEEECT-TSC---EEEEECEECCSSSCCTTEESCEEEEEEETTT-TEEEEEETTTTEEEEEETTTCC-EEEEECCTTTT
T ss_pred             eEEEEcC-CCC---EEEEeccCCCCCCCCCcccCCCcEEEEECCC-CEEEEEECCCCEEEEEECCCCc-EEEEEeccccC
Confidence            9999984 333   122232          122347899999874 5677788888999999987443 22111123455


Q ss_pred             CCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEE
Q 036510          150 VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIA  229 (288)
Q Consensus       150 ~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~  229 (288)
                      ..+..+.|+| +   .++..    +++..++...+..|++||..++... ..+....++......|+++|++    .+++
T Consensus       241 ~~~~~~~~~p-g---~~~~~----~g~~~v~~~~~~~v~~~~~~~g~~~-~~~~~~~~~~~~p~~ia~~~dG----~lyv  307 (329)
T 3fvz_A          241 RNVFAISYIP-G---FLFAV----NGKPYFGDQEPVQGFVMNFSSGEII-DVFKPVRKHFDMPHDIVASEDG----TVYI  307 (329)
T ss_dssp             TCEEEEEEET-T---EEEEE----ECCCCTTCSCCCCEEEEETTTCCEE-EEECCSSSCCSSEEEEEECTTS----EEEE
T ss_pred             CCcceeeecC-C---EEEEe----CCCEEeccCCCcEEEEEEcCCCeEE-EEEcCCCCccCCeeEEEECCCC----CEEE
Confidence            6788899988 2   11111    1234445556778999998776321 1111114566678999999984    6888


Q ss_pred             EEeCCCcEEEEEeec
Q 036510          230 SASEDGKVIIWTVAR  244 (288)
Q Consensus       230 s~s~D~~i~iw~~~~  244 (288)
                      +...++.|++|++..
T Consensus       308 ad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          308 GDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EESSSCCEEEEEEEE
T ss_pred             EECCCCEEEEEeCCc
Confidence            889999999999874

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.46  E-value=5.4e-10  Score=93.25  Aligned_cols=241  Identities=9%  Similarity=-0.030  Sum_probs=157.3

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCC
Q 036510            9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN   88 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~   88 (288)
                      .+...+.++.++++|+++++...++.|..|+.. +... ...+..+...+.++++.+  ++.++++...++.|..|+.. 
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~-   86 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISS--DGEVWFTENAANKIGRITKK-   86 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECTT-
T ss_pred             CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECC--CCCEEEeCCCCCeEEEECCC-
Confidence            455678999999999988877778899999875 3221 112223456788999875  37888887778999999875 


Q ss_pred             CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceec
Q 036510           89 SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG  168 (288)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~  168 (288)
                      +. . ....++.....+.++.+.|+  +.++++...++.|..||. .+ ..... ........+..+.++|++       
T Consensus        87 g~-~-~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~d~-~g-~~~~~-~~~~~~~~~~~i~~~~~g-------  152 (299)
T 2z2n_A           87 GI-I-KEYTLPNPDSAPYGITEGPN--GDIWFTEMNGNRIGRITD-DG-KIREY-ELPNKGSYPSFITLGSDN-------  152 (299)
T ss_dssp             SC-E-EEEECSSTTCCEEEEEECTT--SCEEEEETTTTEEEEECT-TC-CEEEE-ECSSTTCCEEEEEECTTS-------
T ss_pred             Cc-E-EEEeCCCcCCCceeeEECCC--CCEEEEecCCceEEEECC-CC-CEEEe-cCCCCCCCCceEEEcCCC-------
Confidence            22 2 11222234456889999886  566666666788999987 32 22221 112233457788888775       


Q ss_pred             ccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCc
Q 036510          169 SGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ  248 (288)
Q Consensus       169 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~  248 (288)
                             ++.++...++.|..||. ++..  ... .+..+...+..+.+.+++    .+.++...++.|..|+. ... .
T Consensus       153 -------~l~v~~~~~~~i~~~~~-~g~~--~~~-~~~~~~~~~~~i~~~~~g----~l~v~~~~~~~i~~~~~-~g~-~  215 (299)
T 2z2n_A          153 -------ALWFTENQNNAIGRITE-SGDI--TEF-KIPTPASGPVGITKGNDD----ALWFVEIIGNKIGRITT-SGE-I  215 (299)
T ss_dssp             -------CEEEEETTTTEEEEECT-TCCE--EEE-ECSSTTCCEEEEEECTTS----SEEEEETTTTEEEEECT-TCC-E
T ss_pred             -------CEEEEeCCCCEEEEEcC-CCcE--EEe-eCCCCCCcceeEEECCCC----CEEEEccCCceEEEECC-CCc-E
Confidence                   55666656778989987 5421  111 122334457889999873    56766667889999987 321 1


Q ss_pred             ccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          249 WEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       249 ~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                       ...........+..++++|+|+.+++...++.|..||
T Consensus       216 -~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d  252 (299)
T 2z2n_A          216 -TEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLT  252 (299)
T ss_dssp             -EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEE
T ss_pred             -EEEECCCCCCCceeEEECCCCCEEEeccCCceEEEEC
Confidence             1111112235688999999999776665778888887

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.44  E-value=9.6e-11  Score=97.80  Aligned_cols=197  Identities=18%  Similarity=0.155  Sum_probs=132.8

Q ss_pred             ccccceEEEEE-cCCCCEEEEeeC-CCcEEEEEeCCCCceeeEEEe-ccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            9 GHEDTVHDVAM-DYYGKRLATASS-DYSIKIIGVGNNTSQHLAKLS-GHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         9 ~h~~~v~~~~~-s~~g~~l~s~~~-d~~i~lwd~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      +|...+.++++ .++|+++++... ++.|++|+.+   ++.+..+. .+...+.+++++++  ++++++.+.++.|.+|+
T Consensus        74 ~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~---g~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~  148 (286)
T 1q7f_A           74 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY---GQFVRKFGATILQHPRGVTVDNK--GRIIVVECKVMRVIIFD  148 (286)
T ss_dssp             TCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT---SCEEEEECTTTCSCEEEEEECTT--SCEEEEETTTTEEEEEC
T ss_pred             ccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC---CcEEEEecCccCCCceEEEEeCC--CCEEEEECCCCEEEEEc
Confidence            35567789999 577877776643 8899999843   23444453 34456889999764  78888888899999998


Q ss_pred             cCCCCceEEeEEee--cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEee-ccCCCCeeEEEeCCCCC
Q 036510           86 EGNSNEWIKDHVFE--DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRID-QAHPVGVTSVSWAPSTA  162 (288)
Q Consensus        86 ~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~v~~i~~~p~~~  162 (288)
                      .. +.   ....+.  .+...+.+++++|+  +.++++...++.|++|+...  .. ..... .++......+.++|++ 
T Consensus       149 ~~-g~---~~~~~~~~~~~~~p~~i~~~~~--g~l~v~~~~~~~i~~~~~~g--~~-~~~~~~~g~~~~p~~i~~d~~G-  218 (286)
T 1q7f_A          149 QN-GN---VLHKFGCSKHLEFPNGVVVNDK--QEIFISDNRAHCVKVFNYEG--QY-LRQIGGEGITNYPIGVGINSNG-  218 (286)
T ss_dssp             TT-SC---EEEEEECTTTCSSEEEEEECSS--SEEEEEEGGGTEEEEEETTC--CE-EEEESCTTTSCSEEEEEECTTC-
T ss_pred             CC-CC---EEEEeCCCCccCCcEEEEECCC--CCEEEEECCCCEEEEEcCCC--CE-EEEEccCCccCCCcEEEECCCC-
Confidence            64 33   222332  34456899999997  56777777889999999632  11 11111 1223457788888876 


Q ss_pred             CCceecccccCCCceeEEeecCC-cEEEEEEeCCceeeeeeeccccCC--cceEEEEecCCCCCCCcEEEEEeCCCcEEE
Q 036510          163 PGALVGSGFLDPVQKLCSGGCDN-TVKVWKLYNGIWKMDCFPALQMHT--DWVRDVAWAPNLGLPKSTIASASEDGKVII  239 (288)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~h~--~~V~~v~~sp~~~~~~~~l~s~s~D~~i~i  239 (288)
                                   +++++...++ .|.+||.. +.    .+..+..+.  ..+.+++++|++    +++++ +.|+.|++
T Consensus       219 -------------~l~v~~~~~~~~i~~~~~~-g~----~~~~~~~~~~~~~~~~i~~~~~g----~l~vs-~~~~~v~v  275 (286)
T 1q7f_A          219 -------------EILIADNHNNFNLTIFTQD-GQ----LISALESKVKHAQCFDVALMDDG----SVVLA-SKDYRLYI  275 (286)
T ss_dssp             -------------CEEEEECSSSCEEEEECTT-SC----EEEEEEESSCCSCEEEEEEETTT----EEEEE-ETTTEEEE
T ss_pred             -------------CEEEEeCCCCEEEEEECCC-CC----EEEEEcccCCCCcceeEEECCCC----cEEEE-CCCCeEEE
Confidence                         6677777775 99999953 32    222333332  247799999974    56666 67999999


Q ss_pred             EEee
Q 036510          240 WTVA  243 (288)
Q Consensus       240 w~~~  243 (288)
                      |+..
T Consensus       276 ~~~~  279 (286)
T 1q7f_A          276 YRYV  279 (286)
T ss_dssp             EECS
T ss_pred             EEcc
Confidence            9875

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.43  E-value=6e-10  Score=93.93  Aligned_cols=245  Identities=9%  Similarity=0.032  Sum_probs=146.5

Q ss_pred             cceEEEEEcCCCCEEEE-------eeCCCcEEEEEeCCCCceeeEE--EeccccCeEEEEecCCCCCCEEEEeeCCCcEE
Q 036510           12 DTVHDVAMDYYGKRLAT-------ASSDYSIKIIGVGNNTSQHLAK--LSGHKGAVWEVAWAHPKFGSILASCSFDGTVI   82 (288)
Q Consensus        12 ~~v~~~~~s~~g~~l~s-------~~~d~~i~lwd~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~   82 (288)
                      ....+++|+++|+++++       +..++.|.+|+...+....+..  ..++...+.+++++++ .+.++++.. ++.|.
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~-~g~l~v~~~-~~~l~   95 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRD-ANQLFVADM-RLGLL   95 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSS-SSEEEEEET-TTEEE
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecC-CCcEEEEEC-CCCEE
Confidence            45578899999988888       6778899999864432211110  0125567889998743 155555544 44788


Q ss_pred             EeecCCCCceEEe-EEe-e-cCCCceeEEEeccCCCCeEEEEEeCC---------------CcEEEEeecCCCCeeeEEe
Q 036510           83 IWKEGNSNEWIKD-HVF-E-DHKSSVNSIDWAPHELGLCLACGSSD---------------GNISVFTARADGGWDTSRI  144 (288)
Q Consensus        83 iwd~~~~~~~~~~-~~~-~-~h~~~v~~l~~~p~~~~~~l~sg~~d---------------~~i~i~d~~~~~~~~~~~~  144 (288)
                      +|+.. +. .... ... . .....+.++.+.|+  +.++++...+               +.|..|+..  +.....  
T Consensus        96 ~~d~~-g~-~~~~~~~~~~~~~~~~~~~i~~d~~--g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~--  167 (314)
T 1pjx_A           96 VVQTD-GT-FEEIAKKDSEGRRMQGCNDCAFDYE--GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQMIQV--  167 (314)
T ss_dssp             EEETT-SC-EEECCSBCTTSCBCBCCCEEEECTT--SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SCEEEE--
T ss_pred             EEeCC-CC-EEEEEeccCCCccccCCcCEEECCC--CCEEEEecCcccccccccccccCCCCeEEEECCC--CCEEEe--
Confidence            89876 43 2111 100 0 11235789999987  5555555443               455555543  222211  


Q ss_pred             eccCCCCeeEEEeC----CCCCCCceecccccCCCceeEEeecCCcEEEEEEe-CCce-eeeeeeccccCC-cceEEEEe
Q 036510          145 DQAHPVGVTSVSWA----PSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLY-NGIW-KMDCFPALQMHT-DWVRDVAW  217 (288)
Q Consensus       145 ~~~~~~~v~~i~~~----p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~-~~~~~~~~~~h~-~~V~~v~~  217 (288)
                       ..+......+.|+    |++.             .++++...++.|.+||.. .+.. ..+....+.++. .....+.+
T Consensus       168 -~~~~~~~~~i~~~~~~d~dg~-------------~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~  233 (314)
T 1pjx_A          168 -DTAFQFPNGIAVRHMNDGRPY-------------QLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDF  233 (314)
T ss_dssp             -EEEESSEEEEEEEECTTSCEE-------------EEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEE
T ss_pred             -ccCCCCcceEEEecccCCCCC-------------EEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEE
Confidence             1112235677777    7651             234555667899999986 3321 111223334443 55788999


Q ss_pred             cCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEe-CCCcEEEeEc
Q 036510          218 APNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVAD-GNNNVTLWEE  287 (288)
Q Consensus       218 sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~-~d~~v~~w~~  287 (288)
                      ++++    .+.++...++.|.+||.+....   ...+......+.+++|+|||+.|.+++ .++.|..|+.
T Consensus       234 d~~G----~l~v~~~~~~~i~~~d~~~g~~---~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~  297 (314)
T 1pjx_A          234 DEDN----NLLVANWGSSHIEVFGPDGGQP---KMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             BTTC----CEEEEEETTTEEEEECTTCBSC---SEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             CCCC----CEEEEEcCCCEEEEEcCCCCcE---eEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence            9974    6777777888999998753211   122233336789999999999655554 5678888874

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.41  E-value=3.1e-11  Score=113.70  Aligned_cols=233  Identities=10%  Similarity=-0.035  Sum_probs=140.2

Q ss_pred             cCCCCEEEEeeCCC---cEEEEEeC--CCCceeeEEE----eccccCeEEEEecCCCCCCEEE-----EeeCCCcEEEee
Q 036510           20 DYYGKRLATASSDY---SIKIIGVG--NNTSQHLAKL----SGHKGAVWEVAWAHPKFGSILA-----SCSFDGTVIIWK   85 (288)
Q Consensus        20 s~~g~~l~s~~~d~---~i~lwd~~--~~~~~~~~~~----~~h~~~v~~~~~~~~~~~~~l~-----s~s~d~~v~iwd   85 (288)
                      +|+|++++-...++   ...||-.+  .+..+.+...    .+|...+..++|||+  |++|+     +|+.+.+|++||
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPD--G~~la~~~~~~G~~~~~i~v~d  153 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWD--GKKVAFAQKPNAADEAVLHVID  153 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTT--SSEEEEEEEETTCSCCEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCC--CCEEEEEECCCCCceEEEEEEE
Confidence            47898887766654   34566543  2222222111    145567899999965  88888     555668999999


Q ss_pred             cCCCCceEEeEEeecCCCce--eEEEeccCCCCeEEEEEeCCCc-------------EEEEeecCCCCee-eEEeeccCC
Q 036510           86 EGNSNEWIKDHVFEDHKSSV--NSIDWAPHELGLCLACGSSDGN-------------ISVFTARADGGWD-TSRIDQAHP  149 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v--~~l~~~p~~~~~~l~sg~~d~~-------------i~i~d~~~~~~~~-~~~~~~~~~  149 (288)
                      +.++...   .  ..+...+  ..++|+|+  +..++.++.|..             |++|++.++..-. .......|+
T Consensus       154 l~tg~~~---~--~~~~~~~~~~~~~wspD--g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~  226 (695)
T 2bkl_A          154 VDSGEWS---K--VDVIEGGKYATPKWTPD--SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDP  226 (695)
T ss_dssp             TTTCCBC---S--SCCBSCCTTCCCEECTT--SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCT
T ss_pred             CCCCCCc---C--CcccCcccccceEEecC--CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCC
Confidence            9876521   0  1122222  68999998  566777777765             9999987653211 112223455


Q ss_pred             CCeeEEEeCCCCCCCceecccccCCCceeEEeecCC----cEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCC
Q 036510          150 VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDN----TVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPK  225 (288)
Q Consensus       150 ~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~  225 (288)
                      ..+..+.|+|++              ++|+.++.++    .|.+||..++.     ...+..+...+....| |++    
T Consensus       227 ~~~~~~~~SpDG--------------~~l~~~~~~~~~~~~l~~~~~~~~~-----~~~l~~~~~~~~~~~~-~~g----  282 (695)
T 2bkl_A          227 TTFLQSDLSRDG--------------KYLFVYILRGWSENDVYWKRPGEKD-----FRLLVKGVGAKYEVHA-WKD----  282 (695)
T ss_dssp             TCEEEEEECTTS--------------CCEEEEEEETTTEEEEEEECTTCSS-----CEEEEECSSCCEEEEE-ETT----
T ss_pred             EEEEEEEECCCC--------------CEEEEEEeCCCCceEEEEEcCCCCc-----eEEeecCCCceEEEEe-cCC----
Confidence            678899999998              4555554444    45555432221     2233445555566666 442    


Q ss_pred             cEEEEEeC---CCcEEEEEeecCCCcccceEeecc-ccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          226 STIASASE---DGKVIIWTVAREGDQWEGKVLHDF-KTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       226 ~~l~s~s~---D~~i~iw~~~~~~~~~~~~~~~~~-~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      .+++....   ++.|.+|++.......-..++... ...+..++|+ ++.++++...|+..+||.
T Consensus       283 ~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~  346 (695)
T 2bkl_A          283 RFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRV  346 (695)
T ss_dssp             EEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred             cEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEE
Confidence            44444442   578999987543210001232222 3457888998 788889999999998885

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.40  E-value=1.3e-10  Score=97.18  Aligned_cols=217  Identities=12%  Similarity=0.041  Sum_probs=135.9

Q ss_pred             CCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccc-cCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeec
Q 036510           22 YGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHK-GAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFED  100 (288)
Q Consensus        22 ~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~  100 (288)
                      .+++|++++.|+.|.+||..  +++.+.++..+. ..+.++.++++  |++|+  +.++.|..||. +++   .+..+..
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~--tG~~~w~~~~~~~~~~~~~~~~pd--G~ilv--s~~~~V~~~d~-~G~---~~W~~~~   73 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKD--TKEIVWEYPLEKGWECNSVAATKA--GEILF--SYSKGAKMITR-DGR---ELWNIAA   73 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETT--TTEEEEEEECCTTCCCCEEEECTT--SCEEE--ECBSEEEEECT-TSC---EEEEEEC
T ss_pred             CCcEEEeeCCCCEEEEEECC--CCeEEEEeCCCccCCCcCeEECCC--CCEEE--eCCCCEEEECC-CCC---EEEEEcC
Confidence            46799999999999999973  457788887766 46788888764  88888  45788999998 554   3344544


Q ss_pred             C-CCceeEEEeccCCCCeEEEEEeC-CCcEEEEeecCCCCeeeEEeec---cCCCCeeEEEeCCCCCCCceecccccCCC
Q 036510          101 H-KSSVNSIDWAPHELGLCLACGSS-DGNISVFTARADGGWDTSRIDQ---AHPVGVTSVSWAPSTAPGALVGSGFLDPV  175 (288)
Q Consensus       101 h-~~~v~~l~~~p~~~~~~l~sg~~-d~~i~i~d~~~~~~~~~~~~~~---~~~~~v~~i~~~p~~~~~~~~~~~~~~~~  175 (288)
                      + ...+.++.+.|+  +.++++.+. ++.|..++. ++..........   .+......+...++              +
T Consensus        74 ~~~~~~~~~~~~~d--G~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~--------------G  136 (276)
T 3no2_A           74 PAGCEMQTARILPD--GNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKK--------------G  136 (276)
T ss_dssp             CTTCEEEEEEECTT--SCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTT--------------S
T ss_pred             CCCccccccEECCC--CCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCC--------------C
Confidence            3 346788888887  666776665 555655553 222111111110   01011222333343              4


Q ss_pred             ceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEee
Q 036510          176 QKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLH  255 (288)
Q Consensus       176 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~  255 (288)
                      +++++...++.|..||.. +.    .+..+..+ ....++...++    +.++++++.++.|..+|....+..++... .
T Consensus       137 ~~lv~~~~~~~v~~~d~~-G~----~~w~~~~~-~~~~~~~~~~~----g~~~v~~~~~~~v~~~d~~tG~~~w~~~~-~  205 (276)
T 3no2_A          137 NYLVPLFATSEVREIAPN-GQ----LLNSVKLS-GTPFSSAFLDN----GDCLVACGDAHCFVQLNLESNRIVRRVNA-N  205 (276)
T ss_dssp             CEEEEETTTTEEEEECTT-SC----EEEEEECS-SCCCEEEECTT----SCEEEECBTTSEEEEECTTTCCEEEEEEG-G
T ss_pred             CEEEEecCCCEEEEECCC-CC----EEEEEECC-CCccceeEcCC----CCEEEEeCCCCeEEEEeCcCCcEEEEecC-C
Confidence            788999999999999976 52    33333332 23456677776    36788888888898888764322221110 1


Q ss_pred             ccc----cCeEEEEeecCCCEEEEE
Q 036510          256 DFK----TPVYRVSWSLTGNILAVA  276 (288)
Q Consensus       256 ~~~----~~i~~~~~spdg~~l~s~  276 (288)
                      +..    ..+..++..++|+.+++.
T Consensus       206 ~~~~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          206 DIEGVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             GSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred             CCCCccccccccceEcCCCCEEEEe
Confidence            111    236788888899888776

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.39  E-value=2e-11  Score=106.37  Aligned_cols=176  Identities=13%  Similarity=0.027  Sum_probs=124.7

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCC---------ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510           13 TVHDVAMDYYGKRLATASSDYSIKIIGVGNNT---------SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVII   83 (288)
Q Consensus        13 ~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i   83 (288)
                      .++.+++++...++++|+.+ .+.+|++..-.         .+... ...+.. |+.++|  +  +.+|+.+ .++.|++
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~-~~~lp~-V~~l~f--d--~~~L~v~-~~~~l~v  110 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKW-EKEIPD-VIFVCF--H--GDQVLVS-TRNALYS  110 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSE-EEECTT-EEEEEE--E--TTEEEEE-ESSEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceE-EeeCCC-eeEEEE--C--CCEEEEE-cCCcEEE
Confidence            57889999999999999998 55669763211         11112 234566 999999  3  7888888 8899999


Q ss_pred             eecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCC
Q 036510           84 WKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAP  163 (288)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~  163 (288)
                      ||+.+...   ......|..++.++.+.+.   . ++.+..||.|.+||++++...   .    +...|++++|+|.+  
T Consensus       111 ~dv~sl~~---~~~~~~~~~~v~~i~~~~p---~-~av~~~dG~L~v~dl~~~~~~---~----~~~~Vs~v~WSpkG--  174 (388)
T 1xip_A          111 LDLEELSE---FRTVTSFEKPVFQLKNVNN---T-LVILNSVNDLSALDLRTKSTK---Q----LAQNVTSFDVTNSQ--  174 (388)
T ss_dssp             EESSSTTC---EEEEEECSSCEEEEEECSS---E-EEEEETTSEEEEEETTTCCEE---E----EEESEEEEEECSSE--
T ss_pred             EEchhhhc---cCccceeecceeeEEecCC---C-EEEEECCCCEEEEEccCCccc---c----ccCCceEEEEcCCc--
Confidence            99876542   2234567778888877653   2 777899999999999865421   1    23479999999975  


Q ss_pred             CceecccccCCCceeEEeecCCcEEEEEEeCCce--e--eeeeeccc---cCCcceEEEEecCCCCCCCcEEEE
Q 036510          164 GALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIW--K--MDCFPALQ---MHTDWVRDVAWAPNLGLPKSTIAS  230 (288)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~--~~~~~~~~---~h~~~V~~v~~sp~~~~~~~~l~s  230 (288)
                                    ++.|..|+++++|+......  .  +.+...+.   +|...|.+|.|.++.    .++++
T Consensus       175 --------------~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~----~flv~  230 (388)
T 1xip_A          175 --------------LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ----DFLAV  230 (388)
T ss_dssp             --------------EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS----EEEEE
T ss_pred             --------------eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC----eEEEE
Confidence                          67788999999999877532  1  11111223   477889999999973    45555

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.38  E-value=1.2e-10  Score=109.87  Aligned_cols=234  Identities=13%  Similarity=0.021  Sum_probs=138.3

Q ss_pred             CCCCEEEEeeCCC---cEEEEEeC--CCCceeeEE----EeccccCeEEEEecCCCCCCEEEEeeCCC-----cEEEeec
Q 036510           21 YYGKRLATASSDY---SIKIIGVG--NNTSQHLAK----LSGHKGAVWEVAWAHPKFGSILASCSFDG-----TVIIWKE   86 (288)
Q Consensus        21 ~~g~~l~s~~~d~---~i~lwd~~--~~~~~~~~~----~~~h~~~v~~~~~~~~~~~~~l~s~s~d~-----~v~iwd~   86 (288)
                      |+|++++-...++   .-.||-.+  .+..+.+..    -.+|...+..++|||+  |++|+.++.++     +|++||+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPD--g~~la~~~~~~G~~~~~i~v~d~  158 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSED--GEYFAYGLSASGSDWVTIKFMKV  158 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTT--SSEEEEEEEETTCSCEEEEEEET
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCC--CCEEEEEEcCCCCceEEEEEEEC
Confidence            7888776544332   12455443  222222211    1134456889999965  88888665543     8999999


Q ss_pred             CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCc----------------EEEEeecCCCCeeeEE-eeccCC
Q 036510           87 GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGN----------------ISVFTARADGGWDTSR-IDQAHP  149 (288)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~----------------i~i~d~~~~~~~~~~~-~~~~~~  149 (288)
                      .++... . ..+..  ..+..++|+||  +..++.++.++.                |++|++.++....... ....|+
T Consensus       159 ~tg~~~-~-~~~~~--~~~~~~~wspD--g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~  232 (710)
T 2xdw_A          159 DGAKEL-P-DVLER--VKFSCMAWTHD--GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEP  232 (710)
T ss_dssp             TTTEEE-E-EEEEE--ECSCCEEECTT--SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCT
T ss_pred             CCCCCC-c-ccccC--cccceEEEEeC--CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCC
Confidence            776421 1 12221  23678999998  556666766655                9999986643211111 122355


Q ss_pred             CCeeEEEeCCCCCCCceecccccCCCceeEEeec-----CCcEEEEEEeC------CceeeeeeeccccCCcceEEEEec
Q 036510          150 VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC-----DNTVKVWKLYN------GIWKMDCFPALQMHTDWVRDVAWA  218 (288)
Q Consensus       150 ~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~~------~~~~~~~~~~~~~h~~~V~~v~~s  218 (288)
                      ..+..+.|+|++              ++|+..+.     +..|.+||+.+      +..   ....+..+...+.. .|+
T Consensus       233 ~~~~~~~~SpDg--------------~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~---~~~~l~~~~~~~~~-~~s  294 (710)
T 2xdw_A          233 KWMGGAELSDDG--------------RYVLLSIREGCDPVNRLWYCDLQQESNGITGIL---KWVKLIDNFEGEYD-YVT  294 (710)
T ss_dssp             TCEEEEEECTTS--------------CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC---CCEEEECSSSSCEE-EEE
T ss_pred             eEEEEEEEcCCC--------------CEEEEEEEccCCCccEEEEEECcccccccCCcc---ceEEeeCCCCcEEE-EEe
Confidence            567889999998              45554433     56799999875      321   12233445555554 477


Q ss_pred             CCCCCCCcEEEEEeC-C---CcEEEEEeecCCCcccceEeeccc--cCeEEEEeecCCCEEEEEeCCCcEEEe
Q 036510          219 PNLGLPKSTIASASE-D---GKVIIWTVAREGDQWEGKVLHDFK--TPVYRVSWSLTGNILAVADGNNNVTLW  285 (288)
Q Consensus       219 p~~~~~~~~l~s~s~-D---~~i~iw~~~~~~~~~~~~~~~~~~--~~i~~~~~spdg~~l~s~~~d~~v~~w  285 (288)
                      |++    ..|+..+. +   ..|.+|++..... .....+..+.  ..+..++|++++.++++...|+..+||
T Consensus       295 ~dg----~~l~~~s~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~  362 (710)
T 2xdw_A          295 NEG----TVFTFKTNRHSPNYRLINIDFTDPEE-SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQ  362 (710)
T ss_dssp             EET----TEEEEEECTTCTTCEEEEEETTSCCG-GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEE
T ss_pred             ccC----CEEEEEECCCCCCCEEEEEeCCCCCc-ccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEE
Confidence            874    44554443 3   3588888764321 0112333332  267889999888899999888865554

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.38  E-value=2.3e-09  Score=98.39  Aligned_cols=249  Identities=12%  Similarity=0.076  Sum_probs=154.6

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecC---CCCCCEEEE-eeCCCcEEEeecCC
Q 036510           13 TVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH---PKFGSILAS-CSFDGTVIIWKEGN   88 (288)
Q Consensus        13 ~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~~~l~s-~s~d~~v~iwd~~~   88 (288)
                      .+..+.|+|||++|++++.|+.|.+||+...+.+.+.++..... ...++|++   + +|++++. .-.++++.++|..+
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-P~~ia~s~~~~p-DGk~l~v~n~~~~~v~ViD~~t  275 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-ARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGET  275 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-EEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTT
T ss_pred             CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-CceeEEccccCC-CCCEEEEEEccCCeEEEEECCC
Confidence            45688999999999999999999999984223455666654333 47899983   2 3666654 45679999999766


Q ss_pred             CCceEEeEEeec----------CCC-ceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEe
Q 036510           89 SNEWIKDHVFED----------HKS-SVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSW  157 (288)
Q Consensus        89 ~~~~~~~~~~~~----------h~~-~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~  157 (288)
                      .+.   ...+..          |.. .+..+..+++. ...++....+|.|.++|...........+  ........+.|
T Consensus       276 ~~~---~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~-~~~vv~~~~~g~v~~vd~~~~~~~~v~~i--~~~~~~~d~~~  349 (567)
T 1qks_A          276 LEP---KKIQSTRGMTYDEQEYHPEPRVAAILASHYR-PEFIVNVKETGKILLVDYTDLNNLKTTEI--SAERFLHDGGL  349 (567)
T ss_dssp             CCE---EEEEECCEECTTTCCEESCCCEEEEEECSSS-SEEEEEETTTTEEEEEETTCSSEEEEEEE--ECCSSEEEEEE
T ss_pred             CcE---EEEEeccccccccccccCCCceEEEEEcCCC-CEEEEEecCCCeEEEEecCCCccceeeee--eccccccCceE
Confidence            542   222221          112 56777777764 44566667788999998765432222121  22334667889


Q ss_pred             CCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeec--cccCCcceEEEEecCCCCCCCcEEEEEe-CC
Q 036510          158 APSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPA--LQMHTDWVRDVAWAPNLGLPKSTIASAS-ED  234 (288)
Q Consensus       158 ~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~h~~~V~~v~~sp~~~~~~~~l~s~s-~D  234 (288)
                      +|++.             .++++...++.|.++|+.++... ..+..  -.-|...--.+ ++|+.   +...++.. .+
T Consensus       350 ~pdgr-------------~~~va~~~sn~V~ViD~~t~kl~-~~i~vgg~~Phpg~g~~~-~~p~~---g~v~~t~~~g~  411 (567)
T 1qks_A          350 DGSHR-------------YFITAANARNKLVVIDTKEGKLV-AIEDTGGQTPHPGRGANF-VHPTF---GPVWATSHMGD  411 (567)
T ss_dssp             CTTSC-------------EEEEEEGGGTEEEEEETTTTEEE-EEEECSSSSBCCTTCEEE-EETTT---EEEEEEEBSSS
T ss_pred             CCCCC-------------EEEEEeCCCCeEEEEECCCCcEE-EEEeccCcCCCCccceee-ECCCC---CcEEEeCCCCC
Confidence            99873             34566667889999999876311 11211  12243221122 57764   23445554 57


Q ss_pred             CcEEEEEeecCCCc---c-cceEeeccccCeEEEEeecCCCEEEEEeC-------CCcEEEeEc
Q 036510          235 GKVIIWTVAREGDQ---W-EGKVLHDFKTPVYRVSWSLTGNILAVADG-------NNNVTLWEE  287 (288)
Q Consensus       235 ~~i~iw~~~~~~~~---~-~~~~~~~~~~~i~~~~~spdg~~l~s~~~-------d~~v~~w~~  287 (288)
                      ++|.+++....+.+   + ....+......-..++.+||++++.+...       .++|.|+|+
T Consensus       412 ~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~  475 (567)
T 1qks_A          412 DSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDI  475 (567)
T ss_dssp             SEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEG
T ss_pred             CeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEEC
Confidence            89999998753211   1 11233322223356889999999988763       358999985

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.37  E-value=1.5e-10  Score=97.21  Aligned_cols=207  Identities=14%  Similarity=0.092  Sum_probs=131.3

Q ss_pred             eeEEEeccccCeEEEEecCCCCCC-EEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC
Q 036510           47 HLAKLSGHKGAVWEVAWAHPKFGS-ILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD  125 (288)
Q Consensus        47 ~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d  125 (288)
                      .+..+..+.....+++|+++  ++ +++++..++.|..|+...+  .   ..+..+...+.++.++|+  +.++++...+
T Consensus        19 ~~~~l~~~~~~~eg~~~d~~--g~~l~~~~~~~~~i~~~~~~~~--~---~~~~~~~~~~~~l~~~~d--g~l~v~~~~~   89 (296)
T 3e5z_A           19 EARRLADGFTWTEGPVYVPA--RSAVIFSDVRQNRTWAWSDDGQ--L---SPEMHPSHHQNGHCLNKQ--GHLIACSHGL   89 (296)
T ss_dssp             CCEEEECCCSSEEEEEEEGG--GTEEEEEEGGGTEEEEEETTSC--E---EEEESSCSSEEEEEECTT--CCEEEEETTT
T ss_pred             cEEEEecCCccccCCeEeCC--CCEEEEEeCCCCEEEEEECCCC--e---EEEECCCCCcceeeECCC--CcEEEEecCC
Confidence            34555566667788999864  66 7888899999999998654  2   234456678999999997  5666666667


Q ss_pred             CcEEEEeecCCCCeeeEE-eecc-CCCCeeEEEeCCCCCCCceecccccCCCceeEE----eec-----------CCcEE
Q 036510          126 GNISVFTARADGGWDTSR-IDQA-HPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCS----GGC-----------DNTVK  188 (288)
Q Consensus       126 ~~i~i~d~~~~~~~~~~~-~~~~-~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s----~~~-----------d~~i~  188 (288)
                      +.|.+||..++. ..... .... ....+..+.++|++              +++++    |+.           .+.-.
T Consensus        90 ~~i~~~d~~~g~-~~~~~~~~~~~~~~~~~~i~~d~~G--------------~l~vtd~~~g~~~~~~~~~~~~~~~~~~  154 (296)
T 3e5z_A           90 RRLERQREPGGE-WESIADSFEGKKLNSPNDVCLAPDG--------------SLWFSDPTYGIDKPEEGYGGEMELPGRW  154 (296)
T ss_dssp             TEEEEECSTTCC-EEEEECEETTEECCCCCCEEECTTS--------------CEEEEECSHHHHCGGGSSCCCCCSSSCE
T ss_pred             CeEEEEcCCCCc-EEEEeeccCCCCCCCCCCEEECCCC--------------CEEEECCccccccccccccccccCCCcE
Confidence            899999986543 22111 1111 11245678888876              55555    221           01224


Q ss_pred             EEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCc-ccceEeeccccCeEEEEee
Q 036510          189 VWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ-WEGKVLHDFKTPVYRVSWS  267 (288)
Q Consensus       189 iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~-~~~~~~~~~~~~i~~~~~s  267 (288)
                      ||.+.... .   ...+..+....+.++|+|++    +++++.+.++.|.+|++...... .....+......+..++++
T Consensus       155 l~~~~~~g-~---~~~~~~~~~~~~gi~~s~dg----~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d  226 (296)
T 3e5z_A          155 VFRLAPDG-T---LSAPIRDRVKPNGLAFLPSG----NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVD  226 (296)
T ss_dssp             EEEECTTS-C---EEEEECCCSSEEEEEECTTS----CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEB
T ss_pred             EEEECCCC-C---EEEeecCCCCCccEEECCCC----CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEEC
Confidence            55554321 1   11223445567899999984    55688888999999998632211 1112221223456789999


Q ss_pred             cCCCEEEEEeCCCcEEEeEc
Q 036510          268 LTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       268 pdg~~l~s~~~d~~v~~w~~  287 (288)
                      ++|+++++.  ++.|.+|+.
T Consensus       227 ~~G~l~v~~--~~~v~~~~~  244 (296)
T 3e5z_A          227 AGGLIWASA--GDGVHVLTP  244 (296)
T ss_dssp             TTSCEEEEE--TTEEEEECT
T ss_pred             CCCCEEEEc--CCeEEEECC
Confidence            999976655  788999973

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.35  E-value=8.5e-09  Score=85.90  Aligned_cols=238  Identities=9%  Similarity=-0.004  Sum_probs=151.1

Q ss_pred             cccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC
Q 036510           10 HEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS   89 (288)
Q Consensus        10 h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~   89 (288)
                      +...+.++.++++|+++++...++.|..|+.+. ... ...+......+..+++.+  ++.++++...++.|..|+. ++
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~-~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~d~-~g  129 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKKG-IIK-EYTLPNPDSAPYGITEGP--NGDIWFTEMNGNRIGRITD-DG  129 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEE-EEECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECT-TC
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-cEE-EEeCCCcCCCceeeEECC--CCCEEEEecCCceEEEECC-CC
Confidence            346688899999999888877788888888642 211 122223455688999875  3788888777899999987 43


Q ss_pred             CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecc
Q 036510           90 NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS  169 (288)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~  169 (288)
                      . . .......+...+.++.+.|+  +.+.++...++.|..||. ++ ..... ........+..+.+++++        
T Consensus       130 ~-~-~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~-~g-~~~~~-~~~~~~~~~~~i~~~~~g--------  194 (299)
T 2z2n_A          130 K-I-REYELPNKGSYPSFITLGSD--NALWFTENQNNAIGRITE-SG-DITEF-KIPTPASGPVGITKGNDD--------  194 (299)
T ss_dssp             C-E-EEEECSSTTCCEEEEEECTT--SCEEEEETTTTEEEEECT-TC-CEEEE-ECSSTTCCEEEEEECTTS--------
T ss_pred             C-E-EEecCCCCCCCCceEEEcCC--CCEEEEeCCCCEEEEEcC-CC-cEEEe-eCCCCCCcceeEEECCCC--------
Confidence            3 1 11222334456889999887  566666666788999987 33 22221 112233456778888775        


Q ss_pred             cccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcc
Q 036510          170 GFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQW  249 (288)
Q Consensus       170 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~  249 (288)
                            ++.++...++.|.+||. ++..  ... .+..+...+.++.+.|++    .+.++...++.|..|+.. .  ..
T Consensus       195 ------~l~v~~~~~~~i~~~~~-~g~~--~~~-~~~~~~~~~~~i~~~~~g----~l~v~~~~~~~i~~~d~~-g--~~  257 (299)
T 2z2n_A          195 ------ALWFVEIIGNKIGRITT-SGEI--TEF-KIPTPNARPHAITAGAGI----DLWFTEWGANKIGRLTSN-N--II  257 (299)
T ss_dssp             ------SEEEEETTTTEEEEECT-TCCE--EEE-ECSSTTCCEEEEEECSTT----CEEEEETTTTEEEEEETT-T--EE
T ss_pred             ------CEEEEccCCceEEEECC-CCcE--EEE-ECCCCCCCceeEEECCCC----CEEEeccCCceEEEECCC-C--ce
Confidence                  55555556788999987 5431  111 223344568899999874    566666678899999873 1  11


Q ss_pred             cceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          250 EGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       250 ~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      ...........+.++++ ++|+++++.. .+.|..++
T Consensus       258 ~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~  292 (299)
T 2z2n_A          258 EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLT  292 (299)
T ss_dssp             EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEE
T ss_pred             EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEE
Confidence            11111222356889999 9998877665 45554544

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.34  E-value=8.8e-10  Score=94.28  Aligned_cols=234  Identities=10%  Similarity=0.050  Sum_probs=141.7

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCce
Q 036510           13 TVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEW   92 (288)
Q Consensus        13 ~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~   92 (288)
                      ...++.+. +++++++...+++|.++|...  .+.+.++.. ......++++++  +.++++...++.|.+||..+..  
T Consensus        45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t--~~~~~~i~~-~~~p~~i~~~~~--g~lyv~~~~~~~v~~iD~~t~~--  116 (328)
T 3dsm_A           45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINT--FKEVGRITG-FTSPRYIHFLSD--EKAYVTQIWDYRIFIINPKTYE--  116 (328)
T ss_dssp             CEEEEEEE-TTEEEEEEGGGTEEEEEETTT--CCEEEEEEC-CSSEEEEEEEET--TEEEEEEBSCSEEEEEETTTTE--
T ss_pred             cceEEEEE-CCEEEEEEcCCCEEEEEECcc--cEEEEEcCC-CCCCcEEEEeCC--CeEEEEECCCCeEEEEECCCCe--
Confidence            45667664 456667777789999999853  455666643 456788998654  6666666689999999987653  


Q ss_pred             EEeEEeecCC-----CceeEEEeccCCCCeEEEEEe-CCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCce
Q 036510           93 IKDHVFEDHK-----SSVNSIDWAPHELGLCLACGS-SDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGAL  166 (288)
Q Consensus        93 ~~~~~~~~h~-----~~v~~l~~~p~~~~~~l~sg~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~  166 (288)
                       ....+....     .....+.+ ..  +.++++.. .++.|.++|+.++....  .. .. ......+.++|++     
T Consensus       117 -~~~~i~~g~~~~~~~~p~~i~~-~~--~~lyv~~~~~~~~v~viD~~t~~~~~--~i-~~-g~~p~~i~~~~dG-----  183 (328)
T 3dsm_A          117 -ITGYIECPDMDMESGSTEQMVQ-YG--KYVYVNCWSYQNRILKIDTETDKVVD--EL-TI-GIQPTSLVMDKYN-----  183 (328)
T ss_dssp             -EEEEEECTTCCTTTCBCCCEEE-ET--TEEEEEECTTCCEEEEEETTTTEEEE--EE-EC-SSCBCCCEECTTS-----
T ss_pred             -EEEEEEcCCccccCCCcceEEE-EC--CEEEEEcCCCCCEEEEEECCCCeEEE--EE-Ec-CCCccceEEcCCC-----
Confidence             222333222     14456666 22  55555554 48899999987653211  11 11 1223456666665     


Q ss_pred             ecccccCCCceeEEeecC----------CcEEEEEEeCCceeeeeeeccccC-CcceEEEEecCCCCCCCcEEEEEeCCC
Q 036510          167 VGSGFLDPVQKLCSGGCD----------NTVKVWKLYNGIWKMDCFPALQMH-TDWVRDVAWAPNLGLPKSTIASASEDG  235 (288)
Q Consensus       167 ~~~~~~~~~~~l~s~~~d----------~~i~iwd~~~~~~~~~~~~~~~~h-~~~V~~v~~sp~~~~~~~~l~s~s~D~  235 (288)
                               ++++++..+          +.|.++|..++.    ....+... ......++|+|+.    ++|..+..  
T Consensus       184 ---------~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~----v~~~~~~~~g~~p~~la~~~d~----~~lyv~~~--  244 (328)
T 3dsm_A          184 ---------KMWTITDGGYEGSPYGYEAPSLYRIDAETFT----VEKQFKFKLGDWPSEVQLNGTR----DTLYWINN--  244 (328)
T ss_dssp             ---------EEEEEBCCBCTTCSSCBCCCEEEEEETTTTE----EEEEEECCTTCCCEEEEECTTS----CEEEEESS--
T ss_pred             ---------CEEEEECCCccCCccccCCceEEEEECCCCe----EEEEEecCCCCCceeEEEecCC----CEEEEEcc--
Confidence                     555555444          789999987653    22222211 1246899999974    44544444  


Q ss_pred             cEEEEEeecCCCcccceEeeccccCeEEEEeecC-CCEEEEE----eCCCcEEEeEc
Q 036510          236 KVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLT-GNILAVA----DGNNNVTLWEE  287 (288)
Q Consensus       236 ~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spd-g~~l~s~----~~d~~v~~w~~  287 (288)
                      .|.+||+...... ....+.........++++|+ |+.+++.    ..+++|.+||.
T Consensus       245 ~v~~~d~~t~~~~-~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~  300 (328)
T 3dsm_A          245 DIWRMPVEADRVP-VRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP  300 (328)
T ss_dssp             SEEEEETTCSSCC-SSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred             EEEEEECCCCcee-eeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence            8889987643211 00111111356889999995 5555554    46889999984

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.33  E-value=4.7e-10  Score=97.38  Aligned_cols=225  Identities=12%  Similarity=0.051  Sum_probs=134.1

Q ss_pred             ceEEEEEcCCCCEEEEeeC--CCcEEEEEeCCCCceeeEE-EeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC
Q 036510           13 TVHDVAMDYYGKRLATASS--DYSIKIIGVGNNTSQHLAK-LSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS   89 (288)
Q Consensus        13 ~v~~~~~s~~g~~l~s~~~--d~~i~lwd~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~   89 (288)
                      ....+.|+|||++|++++.  +++|.+||+...  +.+.. +. + ...+.+.+.++ ....+++.+.||++.+|+....
T Consensus       109 ~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~--~~~~~~i~-~-~~~~~v~~~p~-~~~~~~~~~~dg~~~~v~~~~~  183 (361)
T 2oiz_A          109 YDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG--DYVEDVTA-A-AGCWSVIPQPN-RPRSFMTICGDGGLLTINLGED  183 (361)
T ss_dssp             CGGGEEECTTSSEEEEEEESSSEEEEEEETTTT--EEEEEEGG-G-TTEEEEEECTT-SSSEEEEEETTSSEEEEEECTT
T ss_pred             CcceEEECCCCCEEEEECCCCCCeEEEEECCCC--cEEEEEec-C-CCcceeEEcCC-CCeeEEEECCCCcEEEEEECCC
Confidence            3456889999999998874  589999998643  55555 33 2 12233455443 2478889999999999988653


Q ss_pred             CceE-EeE---EeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEee---c---c----CCCCeeEE
Q 036510           90 NEWI-KDH---VFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRID---Q---A----HPVGVTSV  155 (288)
Q Consensus        90 ~~~~-~~~---~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~---~---~----~~~~v~~i  155 (288)
                      .... ...   .+..+..++ .+.+.|+  +..++..+.++.+.++|+..+... .....   .   .    .+....-+
T Consensus       184 g~~~~~~~~~~~~~~~~~~~-~~~~~~~--g~~~~~~~~~~~v~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~p~g~~~~  259 (361)
T 2oiz_A          184 GKVASQSRSKQMFSVKDDPI-FIAPALD--KDKAHFVSYYGNVYSADFSGDEVK-VDGPWSLLNDEDKAKNWVPGGYNLV  259 (361)
T ss_dssp             SSEEEEEECCCCSCTTTSCB-CSCCEEC--SSEEEEEBTTSEEEEEECSSSSCE-EEEEEESCCHHHHHTTCEECCSSCE
T ss_pred             CcEeeeccccceEcCCCCce-EEEeccc--CCEEEEEeCCCeEEEEEecCCCce-ecccccccCccccccccccCCeeEE
Confidence            3221 110   111122222 2223454  333455567889999998644221 11110   0   0    01111125


Q ss_pred             EeCCCCCCCceecccccCCCceeEEee----------cCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCC
Q 036510          156 SWAPSTAPGALVGSGFLDPVQKLCSGG----------CDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPK  225 (288)
Q Consensus       156 ~~~p~~~~~~~~~~~~~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~  225 (288)
                      .++|++.             .++++.+          ..+.|.+||+.++    +.+..+..+.  +.++.|+|++    
T Consensus       260 a~~~dg~-------------~lyv~~~~~~~~~~~~~~~~~v~viD~~t~----~~v~~i~~~~--p~~ia~spdg----  316 (361)
T 2oiz_A          260 GLHRASG-------------RMYVFMHPDGKEGTHKFPAAEIWVMDTKTK----QRVARIPGRD--ALSMTIDQQR----  316 (361)
T ss_dssp             EEETTTT-------------EEEEEEESSCCTTCTTCCCSEEEEEETTTT----EEEEEEECTT--CCEEEEETTT----
T ss_pred             EEecCCC-------------eEEEEEccCCCcccccCCCceEEEEECCCC----cEEEEEecCC--eeEEEECCCC----
Confidence            5666652             3333333          1347999998776    4455666665  7999999984    


Q ss_pred             cEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCC
Q 036510          226 STIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGN  271 (288)
Q Consensus       226 ~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~  271 (288)
                      ++|.+++. ++|.+||...... .....+...+.....++++|||+
T Consensus       317 ~~l~v~n~-~~v~v~D~~t~~l-~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          317 NLMLTLDG-GNVNVYDISQPEP-KLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             TEEEEECS-SCEEEEECSSSSC-EEEEEETTSCSSEEEEEECCCSC
T ss_pred             CEEEEeCC-CeEEEEECCCCcc-eeeEEeccCCCCcEEEEecCCCC
Confidence            57777776 9999999875310 11223334566788999999986

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.31  E-value=1.5e-08  Score=84.38  Aligned_cols=240  Identities=9%  Similarity=-0.022  Sum_probs=153.9

Q ss_pred             cccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC
Q 036510           10 HEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS   89 (288)
Q Consensus        10 h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~   89 (288)
                      ....+.++.++++|+++++...++.|..++.. ..... ..+..+...+.++++.+  ++.++++...++.|..+|.. +
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~v~~~d~~-g   92 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSS--LGDIWFTENGANKIGKLSKK-G   92 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECTT-S
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECC--CCCEEEEecCCCeEEEECCC-C
Confidence            34577899999999988887788999999875 32221 22333446788999874  37788877778899999876 3


Q ss_pred             CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecc
Q 036510           90 NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS  169 (288)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~  169 (288)
                      . . ....+......+.++.+.++  +.++++...++.|..++.. + ...... .......+..+.+.|++        
T Consensus        93 ~-~-~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~~-g-~~~~~~-~~~~~~~~~~i~~d~~g--------  157 (300)
T 2qc5_A           93 G-F-TEYPLPQPDSGPYGITEGLN--GDIWFTQLNGDRIGKLTAD-G-TIYEYD-LPNKGSYPAFITLGSDN--------  157 (300)
T ss_dssp             C-E-EEEECSSTTCCEEEEEECST--TCEEEEETTTTEEEEECTT-S-CEEEEE-CSSTTCCEEEEEECTTS--------
T ss_pred             C-e-EEecCCCCCCCCccceECCC--CCEEEEccCCCeEEEECCC-C-CEEEcc-CCCCCCCceeEEECCCC--------
Confidence            3 2 11222323456889998876  5666666667788888865 2 222111 12223457788888775        


Q ss_pred             cccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcc
Q 036510          170 GFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQW  249 (288)
Q Consensus       170 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~  249 (288)
                            ++.++...++.|..+|. ++...  .. .+..+...+..+.+.+++    .+.++....+.|.+|+.. . .. 
T Consensus       158 ------~l~v~~~~~~~i~~~~~-~g~~~--~~-~~~~~~~~~~~i~~d~~g----~l~v~~~~~~~i~~~~~~-g-~~-  220 (300)
T 2qc5_A          158 ------ALWFTENQNNSIGRITN-TGKLE--EY-PLPTNAAAPVGITSGNDG----ALWFVEIMGNKIGRITTT-G-EI-  220 (300)
T ss_dssp             ------SEEEEETTTTEEEEECT-TCCEE--EE-ECSSTTCCEEEEEECTTS----SEEEEETTTTEEEEECTT-C-CE-
T ss_pred             ------CEEEEecCCCeEEEECC-CCcEE--Ee-eCCCCCCCcceEEECCCC----CEEEEccCCCEEEEEcCC-C-cE-
Confidence                  55555555678888887 43211  11 122334467899998863    566666667789999862 1 11 


Q ss_pred             cceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          250 EGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       250 ~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      ...........+.++++.++|+++++...++.|..|+
T Consensus       221 ~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~  257 (300)
T 2qc5_A          221 SEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRIT  257 (300)
T ss_dssp             EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEC
T ss_pred             EEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEEC
Confidence            1111112235688999999999777665678888876

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.31  E-value=3.6e-09  Score=93.33  Aligned_cols=241  Identities=9%  Similarity=-0.023  Sum_probs=149.8

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCC--cEEEeecCCC
Q 036510           12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDG--TVIIWKEGNS   89 (288)
Q Consensus        12 ~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~--~v~iwd~~~~   89 (288)
                      .....++|+++|+++++...++.|+.||.+..  ........ ..... ++|+++  ++.|+.+..++  .|.+++....
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g--~~~~~~~~-~~~~~-ia~~~~--g~~l~~~d~~~~~~I~~~d~~~~  204 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN--KVTTVHPG-FKGGK-PAVTKD--KQRVYSIGWEGTHTVYVYMKASG  204 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTT--EEEEEEET-CCBCB-CEECTT--SSEEEEEBSSTTCEEEEEEGGGT
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCC--EEEEeecc-CCCCc-eeEecC--CCcEEEEecCCCceEEEEEcCCC
Confidence            35678999999998888888899999998543  22222232 22233 888754  77777777765  7888877544


Q ss_pred             CceEEeEEeec-CCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEe--eccCCCCe--eEEEeCCCCCCC
Q 036510           90 NEWIKDHVFED-HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRI--DQAHPVGV--TSVSWAPSTAPG  164 (288)
Q Consensus        90 ~~~~~~~~~~~-h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~v--~~i~~~p~~~~~  164 (288)
                      ........+.. ....+.+++++|++ +.+++ +..++.|+.||..... ......  ..++...-  ..+.|+|++   
T Consensus       205 ~~~~~~g~~~~~~~~~p~~iav~p~~-g~lyv-~d~~~~I~~~d~~~~~-~~~~~~~~~~g~~~~~P~~~ia~~p~~---  278 (409)
T 3hrp_A          205 WAPTRIGQLGSTFSGKIGAVALDETE-EWLYF-VDSNKNFGRFNVKTQE-VTLIKQLELSGSLGTNPGPYLIYYFVD---  278 (409)
T ss_dssp             TCEEEEEECCTTSCSCCCBCEECTTS-SEEEE-ECTTCEEEEEETTTCC-EEEEEECCCCSCCCCSSCCEEEEETTT---
T ss_pred             ceeEEeeeccchhcCCcEEEEEeCCC-CeEEE-EECCCcEEEEECCCCC-EEEEecccccCCCCCCccccEEEeCCC---
Confidence            32111111112 34567889999953 55444 6667889999986542 211110  11111111  278888854   


Q ss_pred             ceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccC---------------CcceEEEEecCCCCCCCcEEE
Q 036510          165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMH---------------TDWVRDVAWAPNLGLPKSTIA  229 (288)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h---------------~~~V~~v~~sp~~~~~~~~l~  229 (288)
                                +.++++-..++.|..||.....   .   .+.++               -.....++++|++    .+++
T Consensus       279 ----------g~lyv~d~~~~~I~~~~~~g~~---~---~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG----~lyv  338 (409)
T 3hrp_A          279 ----------SNFYMSDQNLSSVYKITPDGEC---E---WFCGSATQKTVQDGLREEALFAQPNGMTVDEDG----NFYI  338 (409)
T ss_dssp             ----------TEEEEEETTTTEEEEECTTCCE---E---EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC----CEEE
T ss_pred             ----------CEEEEEeCCCCEEEEEecCCCE---E---EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC----CEEE
Confidence                      1566677777888888754321   1   11111               1346889999974    5777


Q ss_pred             EEe-CCCcEEEEEeecCCCcccceEeecc---------------ccCeEEEEeecCCCEEEEEeCCCcEEEeEcC
Q 036510          230 SAS-EDGKVIIWTVAREGDQWEGKVLHDF---------------KTPVYRVSWSLTGNILAVADGNNNVTLWEEA  288 (288)
Q Consensus       230 s~s-~D~~i~iw~~~~~~~~~~~~~~~~~---------------~~~i~~~~~spdg~~l~s~~~d~~v~~w~~~  288 (288)
                      +-+ .++.|+.|++...    ....+.+.               -.....++++|+|.++++-..++.|+.++++
T Consensus       339 ad~~~~~~I~~~~~~~G----~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          339 VDGFKGYCLRKLDILDG----YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             EETTTTCEEEEEETTTT----EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred             EeCCCCCEEEEEECCCC----EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence            877 8889999985322    11222221               1357899999998888887888899988754

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.27  E-value=2.1e-08  Score=84.32  Aligned_cols=240  Identities=8%  Similarity=-0.008  Sum_probs=142.6

Q ss_pred             ccccccccceEEEEEcCC-CCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510            5 KIETGHEDTVHDVAMDYY-GKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVII   83 (288)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~-g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i   83 (288)
                      .+...+..--.+..|+++ +.++++...++.|..||.....   ...+ .+...+.+++++++  ++++++.  +..|.+
T Consensus         6 ~~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~---~~~~-~~~~~~~~i~~~~d--G~l~v~~--~~~l~~   77 (297)
T 3g4e_A            6 CVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ---VQRV-TMDAPVSSVALRQS--GGYVATI--GTKFCA   77 (297)
T ss_dssp             EEECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC---EEEE-ECSSCEEEEEEBTT--SSEEEEE--TTEEEE
T ss_pred             EEeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCc---EEEE-eCCCceEEEEECCC--CCEEEEE--CCeEEE
Confidence            333334444557788885 5667777778999999975432   2222 23467899999764  6755553  578999


Q ss_pred             eecCCCCceEEeEEeec--CCCceeEEEeccCCCCeEEEEE-eC--------CCcEEEEeecCCCCeeeEEeeccCCCCe
Q 036510           84 WKEGNSNEWIKDHVFED--HKSSVNSIDWAPHELGLCLACG-SS--------DGNISVFTARADGGWDTSRIDQAHPVGV  152 (288)
Q Consensus        84 wd~~~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~~~l~sg-~~--------d~~i~i~d~~~~~~~~~~~~~~~~~~~v  152 (288)
                      ||..++. .........  ....++.+.+.|+  +.++++. ..        .....+|.+...+....  .. ......
T Consensus        78 ~d~~~g~-~~~~~~~~~~~~~~~~~di~~d~d--G~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~--~~-~~~~~p  151 (297)
T 3g4e_A           78 LNWKEQS-AVVLATVDNDKKNNRFNDGKVDPA--GRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK--YF-DQVDIS  151 (297)
T ss_dssp             EETTTTE-EEEEEECCTTCSSEEEEEEEECTT--SCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE--EE-EEESBE
T ss_pred             EECCCCc-EEEEEecCCCCCCCCCCCEEECCC--CCEEEecCCcccccccccCCCcEEEEEECCCCEEE--Ee-eccccc
Confidence            9986543 211111111  1234788999987  4544433 22        13345666654333221  11 112235


Q ss_pred             eEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEe--CCce-eeeeeeccccCCcceEEEEecCCCCCCCcEEE
Q 036510          153 TSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLY--NGIW-KMDCFPALQMHTDWVRDVAWAPNLGLPKSTIA  229 (288)
Q Consensus       153 ~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~  229 (288)
                      ..+.|+|++.             .++++.+.++.|.+||+.  ++.. ..+....+..+......+.+.+++    .+.+
T Consensus       152 ngi~~spdg~-------------~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G----~lwv  214 (297)
T 3g4e_A          152 NGLDWSLDHK-------------IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG----KLWV  214 (297)
T ss_dssp             EEEEECTTSC-------------EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS----CEEE
T ss_pred             cceEEcCCCC-------------EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC----CEEE
Confidence            6789999872             345667778899999984  3321 112222333344557888998873    5677


Q ss_pred             EEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEee-cCCCEEEEEeC
Q 036510          230 SASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWS-LTGNILAVADG  278 (288)
Q Consensus       230 s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~s-pdg~~l~s~~~  278 (288)
                      +...++.|..||....+   ....+......+++++|. ||++.|.+++.
T Consensus       215 a~~~~~~v~~~d~~tG~---~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          215 ACYNGGRVIRLDPVTGK---RLQTVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEETTTEEEEECTTTCC---EEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             EEcCCCEEEEEcCCCce---EEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence            77778889999875321   112333334578999999 99988776654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.26  E-value=4.4e-10  Score=105.83  Aligned_cols=247  Identities=12%  Similarity=0.021  Sum_probs=140.0

Q ss_pred             ccccccccceEEEEEcCCCCEEE-----EeeCCCcEEEEEeCCCCceeeE-EEeccccCeEEEEecCCCCCCEEEEeeCC
Q 036510            5 KIETGHEDTVHDVAMDYYGKRLA-----TASSDYSIKIIGVGNNTSQHLA-KLSGHKGAVWEVAWAHPKFGSILASCSFD   78 (288)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~g~~l~-----s~~~d~~i~lwd~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~l~s~s~d   78 (288)
                      .+..+|...+.+++|||||++||     +|+.+.+|+++|+..+.  .+. .+.+.  ....++|+ +  ++.|+.++.+
T Consensus       122 ~la~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~--~~~~~~~~~--k~~~~~Ws-D--g~~l~y~~~~  194 (693)
T 3iuj_A          122 TLSPDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ--PLETPLKDV--KFSGISWL-G--NEGFFYSSYD  194 (693)
T ss_dssp             GGSTTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS--EEEEEEEEE--ESCCCEEE-T--TTEEEEEESS
T ss_pred             hccCCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC--CCccccCCc--eeccEEEe-C--CCEEEEEEec
Confidence            34456777888999999999887     34444679999986543  222 22211  12467898 6  7888888877


Q ss_pred             Cc-------------EEEeecCCCCce-EEeEEeec-CCCceeEEEeccCCCCeEEEEEe---CCCcEEEEeecCCC-Ce
Q 036510           79 GT-------------VIIWKEGNSNEW-IKDHVFED-HKSSVNSIDWAPHELGLCLACGS---SDGNISVFTARADG-GW  139 (288)
Q Consensus        79 ~~-------------v~iwd~~~~~~~-~~~~~~~~-h~~~v~~l~~~p~~~~~~l~sg~---~d~~i~i~d~~~~~-~~  139 (288)
                      ..             |++|++.+.... .++..... |...+..+.|+|++. .++++..   ..+.|+++|+..+. .+
T Consensus       195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~i~~~d~~~~~~~~  273 (693)
T 3iuj_A          195 KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDR-FLLISAANSTSGNRLYVKDLSQENAPL  273 (693)
T ss_dssp             CCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSC-EEEEEEESSSSCCEEEEEETTSTTCCC
T ss_pred             CcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCC-EEEEEEccCCCCcEEEEEECCCCCCce
Confidence            43             899988654321 12211122 334577899999842 3333333   23588899886543 22


Q ss_pred             eeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecC---CcEEEEEEeCCceeeeeeeccccCCcceEEEE
Q 036510          140 DTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCD---NTVKVWKLYNGIWKMDCFPALQMHTDWVRDVA  216 (288)
Q Consensus       140 ~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~  216 (288)
                      .   ....+....... |++++.             .+++....+   ..|..+|+.++..  .....+..|...+.  .
T Consensus       274 ~---~l~~~~~~~~~~-~~~~g~-------------~l~~~t~~~~~~~~l~~~d~~~~~~--~~~~~l~~~~~~~~--~  332 (693)
T 3iuj_A          274 L---TVQGDLDADVSL-VDNKGS-------------TLYLLTNRDAPNRRLVTVDAANPGP--AHWRDLIPERQQVL--T  332 (693)
T ss_dssp             E---EEECSSSSCEEE-EEEETT-------------EEEEEECTTCTTCEEEEEETTSCCG--GGCEEEECCCSSCE--E
T ss_pred             E---EEeCCCCceEEE-EeccCC-------------EEEEEECCCCCCCEEEEEeCCCCCc--cccEEEecCCCCEE--E
Confidence            2   222333333333 455441             344444333   4577777765421  01123444555554  7


Q ss_pred             ecCCCCCCCcEEEEEe-CCC--cEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCC----CcEEEeEc
Q 036510          217 WAPNLGLPKSTIASAS-EDG--KVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGN----NNVTLWEE  287 (288)
Q Consensus       217 ~sp~~~~~~~~l~s~s-~D~--~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d----~~v~~w~~  287 (288)
                      |+|++    ++|+... .|+  .|++|++...  . ...+.......+..+.++|+++.|+....+    ++|..||+
T Consensus       333 ~s~~g----~~lv~~~~~~g~~~l~~~d~~g~--~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~  403 (693)
T 3iuj_A          333 VHSGS----GYLFAEYMVDATARVEQFDYEGK--R-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP  403 (693)
T ss_dssp             EEEET----TEEEEEEEETTEEEEEEECTTSC--E-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred             EEEEC----CEEEEEEEECCeeEEEEEECCCC--e-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence            88874    4555554 455  5777776421  1 111212223457778889999877666444    67888774

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.25  E-value=1.6e-10  Score=100.82  Aligned_cols=175  Identities=9%  Similarity=-0.035  Sum_probs=119.7

Q ss_pred             CeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC--------ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcE
Q 036510           57 AVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN--------EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNI  128 (288)
Q Consensus        57 ~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~--------~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i  128 (288)
                      .++.+++++.  ..+|++|+.+ .+++|+..+..        ........ .+.. |+.|+|  +  +.+|+++ .++.|
T Consensus        39 ~~nlLais~~--~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d--~~~L~v~-~~~~l  108 (388)
T 1xip_A           39 SLQNLDISNS--KSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--H--GDQVLVS-TRNAL  108 (388)
T ss_dssp             CCBCEEEETT--TTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--E--TTEEEEE-ESSEE
T ss_pred             cccEEEEcCC--CCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--C--CCEEEEE-cCCcE
Confidence            5788888864  6788888887 55569853211        01111223 3556 999999  4  4567777 78999


Q ss_pred             EEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccC
Q 036510          129 SVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMH  208 (288)
Q Consensus       129 ~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h  208 (288)
                      ++||++......   ....|...+.++.+.+.               + ++.++.||.+.+||+.++..    ..    +
T Consensus       109 ~v~dv~sl~~~~---~~~~~~~~v~~i~~~~p---------------~-~av~~~dG~L~v~dl~~~~~----~~----~  161 (388)
T 1xip_A          109 YSLDLEELSEFR---TVTSFEKPVFQLKNVNN---------------T-LVILNSVNDLSALDLRTKST----KQ----L  161 (388)
T ss_dssp             EEEESSSTTCEE---EEEECSSCEEEEEECSS---------------E-EEEEETTSEEEEEETTTCCE----EE----E
T ss_pred             EEEEchhhhccC---ccceeecceeeEEecCC---------------C-EEEEECCCCEEEEEccCCcc----cc----c
Confidence            999998654322   23356667777776543               2 77889999999999986531    11    3


Q ss_pred             CcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEe------e---ccccCeEEEEeecCCCEEEE
Q 036510          209 TDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVL------H---DFKTPVYRVSWSLTGNILAV  275 (288)
Q Consensus       209 ~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~------~---~~~~~i~~~~~spdg~~l~s  275 (288)
                      ...|.|++|||.+      ++.|..|+++++|++..... ..+..+      .   ++...|.++.|.++++++++
T Consensus       162 ~~~Vs~v~WSpkG------~~vg~~dg~i~~~~~~~~~~-~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          162 AQNVTSFDVTNSQ------LAVLLKDRSFQSFAWRNGEM-EKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EESEEEEEECSSE------EEEEETTSCEEEEEEETTEE-EEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             cCCceEEEEcCCc------eEEEEcCCcEEEEcCCCccc-cccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            4579999999962      78899999999998864310 002222      2   24567999999999999886

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.22  E-value=1.3e-08  Score=93.27  Aligned_cols=236  Identities=12%  Similarity=0.012  Sum_probs=144.6

Q ss_pred             cCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecC--CCCceEEeEE
Q 036510           20 DYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEG--NSNEWIKDHV   97 (288)
Q Consensus        20 s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~--~~~~~~~~~~   97 (288)
                      ++.+.++++...+++|.++|...  .+.+.++... ..+..+.++++  ++++..++.|+.|.+||+.  +..   ....
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t--~~v~~~i~~g-~~p~~v~~SpD--Gr~lyv~~~dg~V~viD~~~~t~~---~v~~  235 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGST--YEIKTVLDTG-YAVHISRLSAS--GRYLFVIGRDGKVNMIDLWMKEPT---TVAE  235 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTT--CCEEEEEECS-SCEEEEEECTT--SCEEEEEETTSEEEEEETTSSSCC---EEEE
T ss_pred             CCCceEEEEeCCCCeEEEEECCC--CeEEEEEeCC-CCccceEECCC--CCEEEEEcCCCeEEEEECCCCCCc---EeEE
Confidence            34456778888899999999854  3556666533 34678999875  8899989999999999985  333   2334


Q ss_pred             eecCCCceeEEEec----cCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeec-------cCCC-CeeEEEeCCCCCCCc
Q 036510           98 FEDHKSSVNSIDWA----PHELGLCLACGSSDGNISVFTARADGGWDTSRIDQ-------AHPV-GVTSVSWAPSTAPGA  165 (288)
Q Consensus        98 ~~~h~~~v~~l~~~----p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~-------~~~~-~v~~i~~~p~~~~~~  165 (288)
                      +.... ....++|+    |++ ..++++...++++.++|..+...........       .|+. .+..+..+++.+   
T Consensus       236 i~~G~-~P~~ia~s~~~~pDG-k~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~---  310 (567)
T 1qks_A          236 IKIGS-EARSIETSKMEGWED-KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP---  310 (567)
T ss_dssp             EECCS-EEEEEEECCSTTCTT-TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS---
T ss_pred             EecCC-CCceeEEccccCCCC-CEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCC---
Confidence            44322 35789999    573 3455566777999999976643322211111       1222 566777777652   


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE  245 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~  245 (288)
                                .++++...++.|.++|...... ++ +..+ .......++.|+|++   ..++++...+++|.++|+...
T Consensus       311 ----------~~vv~~~~~g~v~~vd~~~~~~-~~-v~~i-~~~~~~~d~~~~pdg---r~~~va~~~sn~V~ViD~~t~  374 (567)
T 1qks_A          311 ----------EFIVNVKETGKILLVDYTDLNN-LK-TTEI-SAERFLHDGGLDGSH---RYFITAANARNKLVVIDTKEG  374 (567)
T ss_dssp             ----------EEEEEETTTTEEEEEETTCSSE-EE-EEEE-ECCSSEEEEEECTTS---CEEEEEEGGGTEEEEEETTTT
T ss_pred             ----------EEEEEecCCCeEEEEecCCCcc-ce-eeee-eccccccCceECCCC---CEEEEEeCCCCeEEEEECCCC
Confidence                      4566667788899998754321 11 1111 123346788999985   224455556889999998753


Q ss_pred             CCcccceEeec-ccc--CeEEEE-eecCCCEEE-EEe-CCCcEEEeEc
Q 036510          246 GDQWEGKVLHD-FKT--PVYRVS-WSLTGNILA-VAD-GNNNVTLWEE  287 (288)
Q Consensus       246 ~~~~~~~~~~~-~~~--~i~~~~-~spdg~~l~-s~~-~d~~v~~w~~  287 (288)
                      +.   ...+.. ...  +-..+. ++|++..+. ++. .+++|.|+|.
T Consensus       375 kl---~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~  419 (567)
T 1qks_A          375 KL---VAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGT  419 (567)
T ss_dssp             EE---EEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEEC
T ss_pred             cE---EEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecC
Confidence            21   111111 111  111223 589855544 443 4689999985

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.20  E-value=2.9e-09  Score=87.77  Aligned_cols=197  Identities=10%  Similarity=0.019  Sum_probs=130.4

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEe-ccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510           12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLS-GHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN   90 (288)
Q Consensus        12 ~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~   90 (288)
                      ..+.+++++++|+++++.. ++.|..|+.+...   ...+. .....+.++++.++  +.++++...++.|.+|+.....
T Consensus        67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~---~~~~~~~~~~~p~~i~~~~~--g~l~v~~~~~~~i~~~~~~~~~  140 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNN---QTVLPFDGLNYPEGLAVDTQ--GAVYVADRGNNRVVKLAAGSKT  140 (270)
T ss_dssp             CSCCCEEECTTCCEEEEET-TTEEEEECTTCSC---CEECCCCSCSSEEEEEECTT--CCEEEEEGGGTEEEEECTTCCS
T ss_pred             CCcceeEECCCCCEEEEcC-CCEEEEEeCCCce---EeeeecCCcCCCcceEECCC--CCEEEEECCCCEEEEEECCCce
Confidence            4567899999999777666 8889999875432   22222 22356789999753  7888888888999999754432


Q ss_pred             ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceeccc
Q 036510           91 EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG  170 (288)
Q Consensus        91 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~  170 (288)
                      .   ..........+.+++++|+  +.++++...++.|.+|+......   ......+...+..+.++|++         
T Consensus       141 ~---~~~~~~~~~~p~~i~~~~~--g~l~v~~~~~~~i~~~~~~~~~~---~~~~~~~~~~p~~i~~d~~g---------  203 (270)
T 1rwi_B          141 Q---TVLPFTGLNDPDGVAVDNS--GNVYVTDTDNNRVVKLEAESNNQ---VVLPFTDITAPWGIAVDEAG---------  203 (270)
T ss_dssp             C---EECCCCSCCSCCCEEECTT--CCEEEEEGGGTEEEEECTTTCCE---EECCCSSCCSEEEEEECTTC---------
T ss_pred             e---EeeccccCCCceeEEEeCC--CCEEEEECCCCEEEEEecCCCce---EeecccCCCCceEEEECCCC---------
Confidence            1   1111122345788999987  45666666678999998764321   11111222457788888875         


Q ss_pred             ccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510          171 FLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR  244 (288)
Q Consensus       171 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~  244 (288)
                           .++++...++.|.+||......    ......+...+.++.++|++    .++++...++.|+++++..
T Consensus       204 -----~l~v~~~~~~~v~~~~~~~~~~----~~~~~~~~~~p~~i~~~~~g----~l~v~~~~~~~v~~~~~~~  264 (270)
T 1rwi_B          204 -----TVYVTEHNTNQVVKLLAGSTTS----TVLPFTGLNTPLAVAVDSDR----TVYVADRGNDRVVKLTSLE  264 (270)
T ss_dssp             -----CEEEEETTTSCEEEECTTCSCC----EECCCCSCSCEEEEEECTTC----CEEEEEGGGTEEEEECCCG
T ss_pred             -----CEEEEECCCCcEEEEcCCCCcc----eeeccCCCCCceeEEECCCC----CEEEEECCCCEEEEEcCCC
Confidence                 5666666788899998754321    11112233567899999974    6788888999999998764

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.19  E-value=5.7e-09  Score=98.93  Aligned_cols=235  Identities=13%  Similarity=0.040  Sum_probs=133.5

Q ss_pred             cCCCCEEEEeeCCCc---EEEEEeC-----CCCceeeEE----EeccccCeEEEEecCCCCCCEEEEeeCC-----CcEE
Q 036510           20 DYYGKRLATASSDYS---IKIIGVG-----NNTSQHLAK----LSGHKGAVWEVAWAHPKFGSILASCSFD-----GTVI   82 (288)
Q Consensus        20 s~~g~~l~s~~~d~~---i~lwd~~-----~~~~~~~~~----~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----~~v~   82 (288)
                      +|+|++++-...++.   ..||-.+     ++..+.+..    ..+|...+..++|||+  |++|+.++.+     .+|+
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPD--G~~la~~~~~~G~e~~~i~  192 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDD--GRLLAYSVQDGGSDWRTVK  192 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTT--SSEEEEEEEETTCSEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCC--CCEEEEEEcCCCCceEEEE
Confidence            488988877665543   5666543     222222211    1234446888999965  8888876654     4699


Q ss_pred             EeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCC--------------cEEEEeecCCCCeeeEE-eecc
Q 036510           83 IWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDG--------------NISVFTARADGGWDTSR-IDQA  147 (288)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~--------------~i~i~d~~~~~~~~~~~-~~~~  147 (288)
                      +||+.++... . ..+  +...+..++|+|+ . . ++.++.++              .|++|++.++....... ....
T Consensus       193 v~dl~tg~~~-~-~~~--~~~~~~~~~wspD-~-~-l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~  265 (741)
T 1yr2_A          193 FVGVADGKPL-A-DEL--KWVKFSGLAWLGN-D-A-LLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPE  265 (741)
T ss_dssp             EEETTTCCEE-E-EEE--EEEESCCCEESTT-S-E-EEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTT
T ss_pred             EEECCCCCCC-C-ccC--CCceeccEEEECC-C-E-EEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCC
Confidence            9999876531 1 111  1122467899998 3 3 44444444              38888876543211111 1223


Q ss_pred             CCCCeeEEEeCCCCCCCceecccccCCCceeEEeecC-----CcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCC
Q 036510          148 HPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCD-----NTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLG  222 (288)
Q Consensus       148 ~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~  222 (288)
                      ++..+..+.|+|++              ++|+..+.+     ..|.+||+.++...  +...+..+...+.... +|++ 
T Consensus       266 ~~~~~~~~~~SpDG--------------~~l~~~~~~~~~~~~~l~~~d~~~~~~~--~~~~l~~~~~~~~~~~-~~dg-  327 (741)
T 1yr2_A          266 LPKRGHGASVSSDG--------------RWVVITSSEGTDPVNTVHVARVTNGKIG--PVTALIPDLKAQWDFV-DGVG-  327 (741)
T ss_dssp             CTTCEEEEEECTTS--------------CEEEEEEECTTCSCCEEEEEEEETTEEC--CCEEEECSSSSCEEEE-EEET-
T ss_pred             CCeEEEEEEECCCC--------------CEEEEEEEccCCCcceEEEEECCCCCCc--ccEEecCCCCceEEEE-eccC-
Confidence            34458899999987              555544433     47999999875211  0122333444444443 3663 


Q ss_pred             CCCcEEEEEeCC----CcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          223 LPKSTIASASED----GKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       223 ~~~~~l~s~s~D----~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                         +.|+..+.+    +.|.+|++.... .....++......+..++|+ ++.++++...|+..+||.
T Consensus       328 ---~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~  390 (741)
T 1yr2_A          328 ---DQLWFVSGDGAPLKKIVRVDLSGST-PRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLA  390 (741)
T ss_dssp             ---TEEEEEECTTCTTCEEEEEECSSSS-CEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEE
T ss_pred             ---CEEEEEECCCCCCCEEEEEeCCCCc-cccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEE
Confidence               566666653    348888876421 11123333334456678887 667888888899888885

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.17  E-value=2e-08  Score=84.71  Aligned_cols=232  Identities=9%  Similarity=-0.035  Sum_probs=135.4

Q ss_pred             ccceEEEEEcCCCC-EEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC
Q 036510           11 EDTVHDVAMDYYGK-RLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS   89 (288)
Q Consensus        11 ~~~v~~~~~s~~g~-~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~   89 (288)
                      .....+..|+++|+ ++++...++.|..|+.++ .   ...+..+...+..++++++  |+++++...++.|.+|+.. +
T Consensus        44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-~---~~~~~~~~~~~~gl~~d~d--G~l~v~~~~~~~v~~~~~~-g  116 (305)
T 3dr2_A           44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-T---VDVLLDATAFTNGNAVDAQ--QRLVHCEHGRRAITRSDAD-G  116 (305)
T ss_dssp             CSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-C---EEEEEESCSCEEEEEECTT--SCEEEEETTTTEEEEECTT-S
T ss_pred             CcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-C---EEEEeCCCCccceeeECCC--CCEEEEECCCCEEEEECCC-C
Confidence            34556788999998 567777788999998632 2   3344556677899999764  7777766667889999874 3


Q ss_pred             CceEEeE-Eeec-CCCceeEEEeccCCCCeEEEE----EeC-------------CCcEEEEeecCCCCeeeEEeeccCCC
Q 036510           90 NEWIKDH-VFED-HKSSVNSIDWAPHELGLCLAC----GSS-------------DGNISVFTARADGGWDTSRIDQAHPV  150 (288)
Q Consensus        90 ~~~~~~~-~~~~-h~~~v~~l~~~p~~~~~~l~s----g~~-------------d~~i~i~d~~~~~~~~~~~~~~~~~~  150 (288)
                      . ..... ...+ ....++.+.+.|+  +.+.++    |..             .+.|..||...+. .....    ...
T Consensus       117 ~-~~~~~~~~~~~~~~~~~~i~~d~d--G~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~-~~~~~----~~~  188 (305)
T 3dr2_A          117 Q-AHLLVGRYAGKRLNSPNDLIVARD--GAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP-LQRMA----DLD  188 (305)
T ss_dssp             C-EEEEECEETTEECSCCCCEEECTT--SCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC-CEEEE----EES
T ss_pred             C-EEEEEeccCCCccCCCCCEEECCC--CCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc-EEEEe----cCC
Confidence            3 21111 1111 1134677899887  555554    321             2456666654332 22211    122


Q ss_pred             CeeEEEeCCCCCCCceecccccCCCceeEEeecC------CcEEEEEEeCCce-eeeeeeccccCCcceEEEEecCCCCC
Q 036510          151 GVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCD------NTVKVWKLYNGIW-KMDCFPALQMHTDWVRDVAWAPNLGL  223 (288)
Q Consensus       151 ~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~  223 (288)
                      ....+.|+|++              +.|+.+...      +.|.+||+..+.. ..+.....  .......+.+.+++  
T Consensus       189 ~p~gl~~spdg--------------~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~--~~~~pdgi~~d~~G--  250 (305)
T 3dr2_A          189 HPNGLAFSPDE--------------QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV--PDGLPDGFCVDRGG--  250 (305)
T ss_dssp             SEEEEEECTTS--------------SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC--SSSCCCSEEECTTS--
T ss_pred             CCcceEEcCCC--------------CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC--CCCCCCeEEECCCC--
Confidence            35678899987              444444443      6899999875421 01111111  12223556777763  


Q ss_pred             CCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEE
Q 036510          224 PKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTL  284 (288)
Q Consensus       224 ~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~  284 (288)
                        ++. .+..+ .|.+|+.+..    ....+.. ...+..++|+|+++.|..++.++..++
T Consensus       251 --~lw-v~~~~-gv~~~~~~g~----~~~~~~~-~~~~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          251 --WLW-SSSGT-GVCVFDSDGQ----LLGHIPT-PGTASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             --CEE-ECCSS-EEEEECTTSC----EEEEEEC-SSCCCEEEECTTSCEEEEEETTEEEEE
T ss_pred             --CEE-EecCC-cEEEECCCCC----EEEEEEC-CCceeEEEEeCCCCEEEEEcCCeEEEE
Confidence              434 34444 4888886421    1122222 235788999999999888887655444

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.17  E-value=1.4e-07  Score=78.37  Aligned_cols=237  Identities=7%  Similarity=-0.023  Sum_probs=147.7

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN   90 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~   90 (288)
                      ...+.++.++++|+++++...++.|..+|.. +.. ....+......+..+++.+  ++.++++...++.|..++.. +.
T Consensus        61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~  135 (300)
T 2qc5_A           61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-TEYPLPQPDSGPYGITEGL--NGDIWFTQLNGDRIGKLTAD-GT  135 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECS--TTCEEEEETTTTEEEEECTT-SC
T ss_pred             CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-EEecCCCCCCCCccceECC--CCCEEEEccCCCeEEEECCC-CC
Confidence            3567889999999988877777888888865 322 1222233346688999874  47888887778899999875 33


Q ss_pred             ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceeccc
Q 036510           91 EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG  170 (288)
Q Consensus        91 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~  170 (288)
                       . ....+......+.++.+.|+  +.+.++...++.|..|+. .+ ..... ....+...+..+.+++++         
T Consensus       136 -~-~~~~~~~~~~~~~~i~~d~~--g~l~v~~~~~~~i~~~~~-~g-~~~~~-~~~~~~~~~~~i~~d~~g---------  199 (300)
T 2qc5_A          136 -I-YEYDLPNKGSYPAFITLGSD--NALWFTENQNNSIGRITN-TG-KLEEY-PLPTNAAAPVGITSGNDG---------  199 (300)
T ss_dssp             -E-EEEECSSTTCCEEEEEECTT--SSEEEEETTTTEEEEECT-TC-CEEEE-ECSSTTCCEEEEEECTTS---------
T ss_pred             -E-EEccCCCCCCCceeEEECCC--CCEEEEecCCCeEEEECC-CC-cEEEe-eCCCCCCCcceEEECCCC---------
Confidence             2 11223333456889999887  455665555778888887 32 22221 112233456778887765         


Q ss_pred             ccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCccc
Q 036510          171 FLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWE  250 (288)
Q Consensus       171 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~  250 (288)
                           ++.++....+.|.++|. ++..  ... .+..+...+.++.+.+++    .+.++...++.|..|+.. . .. .
T Consensus       200 -----~l~v~~~~~~~i~~~~~-~g~~--~~~-~~~~~~~~~~~i~~d~~g----~l~v~~~~~~~i~~~~~~-g-~~-~  263 (300)
T 2qc5_A          200 -----ALWFVEIMGNKIGRITT-TGEI--SEY-DIPTPNARPHAITAGKNS----EIWFTEWGANQIGRITND-N-TI-Q  263 (300)
T ss_dssp             -----SEEEEETTTTEEEEECT-TCCE--EEE-ECSSTTCCEEEEEECSTT----CEEEEETTTTEEEEECTT-S-CE-E
T ss_pred             -----CEEEEccCCCEEEEEcC-CCcE--EEE-ECCCCCCCceEEEECCCC----CEEEeccCCCeEEEECCC-C-cE-E
Confidence                 45555555667888887 3321  111 122334567899999873    566666667899999863 1 11 1


Q ss_pred             ceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          251 GKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       251 ~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      ...+......+.++++.|+|+++++.. + .|..++
T Consensus       264 ~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~  297 (300)
T 2qc5_A          264 EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLN  297 (300)
T ss_dssp             EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEE
T ss_pred             EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeC
Confidence            111111234578899999999766554 4 665555

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.16  E-value=2.4e-09  Score=89.44  Aligned_cols=184  Identities=11%  Similarity=0.026  Sum_probs=118.9

Q ss_pred             CCEEEEeeCCCcEEEeecCCCCceEEeEEeecCC-CceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeecc
Q 036510           69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHK-SSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQA  147 (288)
Q Consensus        69 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~  147 (288)
                      +++|++++.|+.|.+||..+++   ....+..+. ..+.++.+.|+  +.+++  +.++.|..||. ++..  ..+....
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~---~~w~~~~~~~~~~~~~~~~pd--G~ilv--s~~~~V~~~d~-~G~~--~W~~~~~   74 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKE---IVWEYPLEKGWECNSVAATKA--GEILF--SYSKGAKMITR-DGRE--LWNIAAP   74 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTE---EEEEEECCTTCCCCEEEECTT--SCEEE--ECBSEEEEECT-TSCE--EEEEECC
T ss_pred             CcEEEeeCCCCEEEEEECCCCe---EEEEeCCCccCCCcCeEECCC--CCEEE--eCCCCEEEECC-CCCE--EEEEcCC
Confidence            7899999999999999987765   345565554 46889999997  56666  45778988887 4431  2222222


Q ss_pred             CCCCeeEEEeCCCCCCCceecccccCCCceeEEeec-CCcEEEEEEeCCce--eeeeeeccccCCcceEEEEecCCCCCC
Q 036510          148 HPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC-DNTVKVWKLYNGIW--KMDCFPALQMHTDWVRDVAWAPNLGLP  224 (288)
Q Consensus       148 ~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~--~~~~~~~~~~h~~~V~~v~~sp~~~~~  224 (288)
                      ....+.++.+.|++              +++++.+. ++.|..+|. ++..  .........++..+...+.+.++    
T Consensus        75 ~~~~~~~~~~~~dG--------------~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~----  135 (276)
T 3no2_A           75 AGCEMQTARILPDG--------------NALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKK----  135 (276)
T ss_dssp             TTCEEEEEEECTTS--------------CEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTT----
T ss_pred             CCccccccEECCCC--------------CEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCC----
Confidence            23457778888876              66777665 555655553 3321  11110011122223445566676    


Q ss_pred             CcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          225 KSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       225 ~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      ++++++...++.|..||.+ .+..+.    ......+.++.+.|+|+.++++..++.|..+|
T Consensus       136 G~~lv~~~~~~~v~~~d~~-G~~~w~----~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d  192 (276)
T 3no2_A          136 GNYLVPLFATSEVREIAPN-GQLLNS----VKLSGTPFSSAFLDNGDCLVACGDAHCFVQLN  192 (276)
T ss_dssp             SCEEEEETTTTEEEEECTT-SCEEEE----EECSSCCCEEEECTTSCEEEECBTTSEEEEEC
T ss_pred             CCEEEEecCCCEEEEECCC-CCEEEE----EECCCCccceeEcCCCCEEEEeCCCCeEEEEe
Confidence            4789999999999999975 322111    11124567788899999999888888887776

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.13  E-value=1.3e-08  Score=86.96  Aligned_cols=215  Identities=6%  Similarity=-0.110  Sum_probs=129.7

Q ss_pred             CCCcEEEEEeCCCCceeeEEEe------ccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCc
Q 036510           31 SDYSIKIIGVGNNTSQHLAKLS------GHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSS  104 (288)
Q Consensus        31 ~d~~i~lwd~~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~  104 (288)
                      .+++|.++|....  +....+.      ........+.+.   .+.++++...+++|.+||..+.+   ....++ ....
T Consensus        15 ~~~~l~~~d~~t~--~~~~~i~~~~n~~~lg~~~~~i~~~---~~~lyv~~~~~~~v~viD~~t~~---~~~~i~-~~~~   85 (328)
T 3dsm_A           15 SNATLSYYDPATC--EVENEVFYRANGFKLGDVAQSMVIR---DGIGWIVVNNSHVIFAIDINTFK---EVGRIT-GFTS   85 (328)
T ss_dssp             CCBEEEEEETTTT--EEECSHHHHHHSSCCBSCEEEEEEE---TTEEEEEEGGGTEEEEEETTTCC---EEEEEE-CCSS
T ss_pred             CCceEEEEECCCC--EEhhhhHhhhcCcccCccceEEEEE---CCEEEEEEcCCCEEEEEECcccE---EEEEcC-CCCC
Confidence            4889999997533  3222221      111335677774   25677777888999999998765   333444 2356


Q ss_pred             eeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccC----CCCeeEEEeCCCCCCCceecccccCCCceeEE
Q 036510          105 VNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAH----PVGVTSVSWAPSTAPGALVGSGFLDPVQKLCS  180 (288)
Q Consensus       105 v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~----~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s  180 (288)
                      ...++++|+  +.++++...++.|.+||..+.....  ....+.    ......+.+ .              .+.++++
T Consensus        86 p~~i~~~~~--g~lyv~~~~~~~v~~iD~~t~~~~~--~i~~g~~~~~~~~p~~i~~-~--------------~~~lyv~  146 (328)
T 3dsm_A           86 PRYIHFLSD--EKAYVTQIWDYRIFIINPKTYEITG--YIECPDMDMESGSTEQMVQ-Y--------------GKYVYVN  146 (328)
T ss_dssp             EEEEEEEET--TEEEEEEBSCSEEEEEETTTTEEEE--EEECTTCCTTTCBCCCEEE-E--------------TTEEEEE
T ss_pred             CcEEEEeCC--CeEEEEECCCCeEEEEECCCCeEEE--EEEcCCccccCCCcceEEE-E--------------CCEEEEE
Confidence            788999887  5555555578999999987642111  111111    002223333 1              1244455


Q ss_pred             ee-cCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCC----------CcEEEEEeecCCCcc
Q 036510          181 GG-CDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASED----------GKVIIWTVAREGDQW  249 (288)
Q Consensus       181 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D----------~~i~iw~~~~~~~~~  249 (288)
                      .. .++.|.++|..++.    ....+.... ....+.++|++    +++++...+          +.|.++|....+   
T Consensus       147 ~~~~~~~v~viD~~t~~----~~~~i~~g~-~p~~i~~~~dG----~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~---  214 (328)
T 3dsm_A          147 CWSYQNRILKIDTETDK----VVDELTIGI-QPTSLVMDKYN----KMWTITDGGYEGSPYGYEAPSLYRIDAETFT---  214 (328)
T ss_dssp             ECTTCCEEEEEETTTTE----EEEEEECSS-CBCCCEECTTS----EEEEEBCCBCTTCSSCBCCCEEEEEETTTTE---
T ss_pred             cCCCCCEEEEEECCCCe----EEEEEEcCC-CccceEEcCCC----CEEEEECCCccCCccccCCceEEEEECCCCe---
Confidence            43 48899999988763    222222222 23577888874    556666554          789999876421   


Q ss_pred             cceEee-ccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          250 EGKVLH-DFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       250 ~~~~~~-~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ....+. ........++|+|||++|.++..  +|.+||.
T Consensus       215 v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~  251 (328)
T 3dsm_A          215 VEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPV  251 (328)
T ss_dssp             EEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEET
T ss_pred             EEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEEC
Confidence            111121 11346889999999999988765  8888885

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.13  E-value=2.3e-07  Score=79.10  Aligned_cols=230  Identities=10%  Similarity=-0.028  Sum_probs=132.8

Q ss_pred             eEEEEEcCCC-CEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCce
Q 036510           14 VHDVAMDYYG-KRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEW   92 (288)
Q Consensus        14 v~~~~~s~~g-~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~   92 (288)
                      ..+..|++++ .++++...++.|..|+...+  + ...+. +...+.+++|+++  ++++++. .+ .|.+||..++. .
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~--~-~~~~~-~~~~v~~i~~~~d--g~l~v~~-~~-gl~~~d~~~g~-~  121 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASG--R-KTVHA-LPFMGSALAKISD--SKQLIAS-DD-GLFLRDTATGV-L  121 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTT--E-EEEEE-CSSCEEEEEEEET--TEEEEEE-TT-EEEEEETTTCC-E
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCC--c-EEEEE-CCCcceEEEEeCC--CeEEEEE-CC-CEEEEECCCCc-E
Confidence            4567899874 56666667888999987543  2 22222 3457899999754  6766654 43 48899986554 2


Q ss_pred             EEeEEeec--CCCceeEEEeccCCCCeEEEEEeCC----CcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCce
Q 036510           93 IKDHVFED--HKSSVNSIDWAPHELGLCLACGSSD----GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGAL  166 (288)
Q Consensus        93 ~~~~~~~~--h~~~v~~l~~~p~~~~~~l~sg~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~  166 (288)
                      ........  ....++.+.++|+  +.++++...+    +...||.+. .+....  .. .+......+.|+|++.    
T Consensus       122 ~~~~~~~~~~~~~~~~~i~~d~~--G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~--~~-~~~~~~~~i~~s~dg~----  191 (326)
T 2ghs_A          122 TLHAELESDLPGNRSNDGRMHPS--GALWIGTMGRKAETGAGSIYHVA-KGKVTK--LF-ADISIPNSICFSPDGT----  191 (326)
T ss_dssp             EEEECSSTTCTTEEEEEEEECTT--SCEEEEEEETTCCTTCEEEEEEE-TTEEEE--EE-EEESSEEEEEECTTSC----
T ss_pred             EEEeeCCCCCCCCCCCCEEECCC--CCEEEEeCCCcCCCCceEEEEEe-CCcEEE--ee-CCCcccCCeEEcCCCC----
Confidence            11111111  1235788999997  4444433211    233444443 222211  11 1122356788999872    


Q ss_pred             ecccccCCCceeEEeecCCcEEEEEEe--CC-cee-eeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEe
Q 036510          167 VGSGFLDPVQKLCSGGCDNTVKVWKLY--NG-IWK-MDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV  242 (288)
Q Consensus       167 ~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~-~~~-~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~  242 (288)
                               .+.++.+.++.|.+||+.  ++ ... .+....+.........+.+.+++    .+.++...++.|..|+.
T Consensus       192 ---------~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G----~lwva~~~~~~v~~~d~  258 (326)
T 2ghs_A          192 ---------TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG----HIWNARWGEGAVDRYDT  258 (326)
T ss_dssp             ---------EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS----CEEEEEETTTEEEEECT
T ss_pred             ---------EEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC----CEEEEEeCCCEEEEECC
Confidence                     234455567889999985  44 211 11222223333456788888863    56666666788999986


Q ss_pred             ecCCCcccceEeeccccCeEEEEee-cCCCEEEEEeCC
Q 036510          243 AREGDQWEGKVLHDFKTPVYRVSWS-LTGNILAVADGN  279 (288)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~i~~~~~s-pdg~~l~s~~~d  279 (288)
                      + . .  ....+......+.+++|+ ||++.|++++..
T Consensus       259 ~-g-~--~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          259 D-G-N--HIARYEVPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             T-C-C--EEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             C-C-C--EEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence            3 1 1  112233334568999999 998877666543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.12  E-value=3.1e-07  Score=79.93  Aligned_cols=236  Identities=11%  Similarity=0.047  Sum_probs=132.1

Q ss_pred             EEEEcCCCCEEEEee----------CCCcEEEEEeCCCCceeeEEEecc-------ccCeEEEEecCCCCCCEEEEeeC-
Q 036510           16 DVAMDYYGKRLATAS----------SDYSIKIIGVGNNTSQHLAKLSGH-------KGAVWEVAWAHPKFGSILASCSF-   77 (288)
Q Consensus        16 ~~~~s~~g~~l~s~~----------~d~~i~lwd~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~~l~s~s~-   77 (288)
                      .+.|+|||++|+.+.          .+++|.++|...  .+.+..+.--       ...-..+.++++  |++|..+.. 
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t--~~~~~~i~~~~~~~~~~g~~p~~~~~spD--G~~l~v~n~~  145 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT--FLPIADIELPDAPRFDVGPYSWMNANTPN--NADLLFFQFA  145 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC--CcEEEEEECCCccccccCCCccceEECCC--CCEEEEEecC
Confidence            788999999988876          367899999743  2334433211       112357888865  788877764 


Q ss_pred             -CCcEEEeecCCCCceEEeEE-eecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeec--cCCCCe-
Q 036510           78 -DGTVIIWKEGNSNEWIKDHV-FEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQ--AHPVGV-  152 (288)
Q Consensus        78 -d~~v~iwd~~~~~~~~~~~~-~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~v-  152 (288)
                       +++|.++| .+..   .... +...    .|+.+.|.+ ...+++.+.||.+.+++. .+..........  .....+ 
T Consensus       146 ~~~~v~viD-~t~~---~~~~~i~~~----~~~~~~~~~-~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~  215 (373)
T 2mad_H          146 AGPAVGLVV-QGGS---SDDQLLSSP----TCYHIHPGA-PSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLL  215 (373)
T ss_pred             CCCeEEEEE-CCCC---EEeEEcCCC----ceEEEEeCC-CceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCccee
Confidence             58899999 7654   2233 3211    234455654 334566778999999998 543221110000  000110 


Q ss_pred             eEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecccc----------CCcceEEEEecCCCC
Q 036510          153 TSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQM----------HTDWVRDVAWAPNLG  222 (288)
Q Consensus       153 ~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~----------h~~~V~~v~~sp~~~  222 (288)
                      ....+.+++             ..+++. +.++.+.+.|+..+...  .+..+..          ......-+.++|+. 
T Consensus       216 ~~~~~~~~~-------------~~~~~~-~~~~~v~vid~~~~~~~--v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~-  278 (373)
T 2mad_H          216 TQPAQANKS-------------GRIVWP-VYSGKILQADISAAGAT--NKAPIDALSGGRKADTWRPGGWQQVAYLKSS-  278 (373)
T ss_pred             ecceeEecC-------------CEEEEE-cCCceEEEEeccCCcce--EeeeeeecCCcccccceecCceEeEEECCCC-
Confidence            112223322             122333 25678888888653211  1111110          11223446788874 


Q ss_pred             CCCcEEEEEe---------CCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCC-EEEEEe-CCCcEEEeEcC
Q 036510          223 LPKSTIASAS---------EDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGN-ILAVAD-GNNNVTLWEEA  288 (288)
Q Consensus       223 ~~~~~l~s~s---------~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~-~l~s~~-~d~~v~~w~~~  288 (288)
                        ....++..         .++.|.+.|....+   ....+ ........++|+|||+ +++++. .+++|.++|.+
T Consensus       279 --~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~---vv~~i-~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~  349 (373)
T 2mad_H          279 --DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ---TSSQI-SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             --CEEEEEeccCCcccccCCCCeEEEEECCCCE---EEEEE-ECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence              23344432         13578888876432   11222 2334578999999999 777777 58999999963

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.09  E-value=2.8e-08  Score=85.42  Aligned_cols=234  Identities=9%  Similarity=0.054  Sum_probs=137.7

Q ss_pred             cceEEEEEcCCCCEEEEeeC--CCcEEEEEeCCCCceeeEEE-------eccccCeEEEEecCCCCCCEEEEeeC-----
Q 036510           12 DTVHDVAMDYYGKRLATASS--DYSIKIIGVGNNTSQHLAKL-------SGHKGAVWEVAWAHPKFGSILASCSF-----   77 (288)
Q Consensus        12 ~~v~~~~~s~~g~~l~s~~~--d~~i~lwd~~~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~~~l~s~s~-----   77 (288)
                      .....++++++|+++++...  ++.++||.++.  ++ +..+       .+|...+..++++++  ++++++-..     
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~--g~-~~~~p~~~~~~~~~~~~p~gv~~d~~--g~L~v~D~g~~~~~   91 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ--DG-LIPFPPQSGNAIITFDTVLGIKSDGN--GIVWMLDNGNQSKS   91 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET--TE-EEESCCCCSSCCCCCSCEEEEEECSS--SEEEEEECHHHHTS
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECC--CC-eecCCCcccCcccceeEeeEEEEcCC--CcEEEEcCCCCcCC
Confidence            56788999999999988642  34366776642  22 2211       235677899999754  666665443     


Q ss_pred             CCcEEEeecCCCCceEEeEEeec------CCCceeEEEeccCCCCeEEEEEe---CCCcEEEEeecCCCCeeeEEeeccC
Q 036510           78 DGTVIIWKEGNSNEWIKDHVFED------HKSSVNSIDWAPHELGLCLACGS---SDGNISVFTARADGGWDTSRIDQAH  148 (288)
Q Consensus        78 d~~v~iwd~~~~~~~~~~~~~~~------h~~~v~~l~~~p~~~~~~l~sg~---~d~~i~i~d~~~~~~~~~~~~~~~~  148 (288)
                      ++.|.+||+.++.   ....+..      +....+.+++.|++ +.++++..   .++.|.+||+..+..   .+....|
T Consensus        92 ~~~i~~~d~~tg~---~~~~~~~~~~~~~~~~~~~~v~vd~~~-g~~yvtd~~~~~~~~i~v~d~~~g~~---~r~~~~~  164 (343)
T 2qe8_A           92 VPKLVAWDTLNNQ---LSRVIYLPPPITLSNSFVNDLAVDLIH-NFVYISDPAPDDKAALIRVDLQTGLA---ARVLQGY  164 (343)
T ss_dssp             CCEEEEEETTTTE---EEEEEECCTTTSCTTCCCCEEEEETTT-TEEEEEECCSGGGCEEEEEETTTCCE---EEECTTC
T ss_pred             CCeEEEEECCCCe---EEEEEECChhhcccccccceEEEecCC-CEEEEEcCccCCCCeEEEEECCCCCE---EEEecCC
Confidence            5889999987654   1222321      22346889998763 45556655   678999999875432   1222221


Q ss_pred             C-----------------------------CCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCc---
Q 036510          149 P-----------------------------VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGI---  196 (288)
Q Consensus       149 ~-----------------------------~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---  196 (288)
                      .                             ..+..|.|+|++              +.|+.+..++. ++|.+....   
T Consensus       165 ~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg--------------~~ly~~~~~~~-~l~~~~~~~~~~  229 (343)
T 2qe8_A          165 PGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN--------------EWLYLSPMHST-SMYRIKSADLSN  229 (343)
T ss_dssp             TTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTS--------------CEEEEEESSCS-EEEEEEHHHHTC
T ss_pred             CcccccccceeECCEEEEeccCCCceeceecccceeEeccCC--------------CEEEEEeCCCC-eEEEEEHHHhcC
Confidence            1                             123445555554              56666655553 556553210   


Q ss_pred             ---eeeeeeec--cccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeecc-ccCeEEEEeecCC
Q 036510          197 ---WKMDCFPA--LQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDF-KTPVYRVSWSLTG  270 (288)
Q Consensus       197 ---~~~~~~~~--~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~-~~~i~~~~~spdg  270 (288)
                         ...+....  ..++......++++++    +.++++...++.|.+||.+..  . ........ ...+..++|.|+|
T Consensus       230 ~~~~~~~~~~~~~~~g~~g~pdgia~d~~----G~l~va~~~~~~V~~~d~~~G--~-~~~~~~~~~~~~p~~va~~~~g  302 (343)
T 2qe8_A          230 LQLTDAELGSKIERYSEKPICDGISIDKD----HNIYVGDLAHSAIGVITSADR--A-YKLLVTDEKLSWTDSFNFGSDG  302 (343)
T ss_dssp             TTCCHHHHHTTCEEEEECCSCSCEEECTT----CCEEEEEGGGTEEEEEETTTT--E-EEEEEECGGGSCEEEEEECTTS
T ss_pred             CCCChhhhhcceEecccCCCCceEEECCC----CCEEEEccCCCeEEEEECCCC--C-EEEEEECCceecCCeeEECCCC
Confidence               00000000  1123334566888887    468888888999999997221  1 11222211 3468899999999


Q ss_pred             CEEEEEeCC
Q 036510          271 NILAVADGN  279 (288)
Q Consensus       271 ~~l~s~~~d  279 (288)
                      +++++.+..
T Consensus       303 ~l~v~~~~~  311 (343)
T 2qe8_A          303 YLYFDCNQL  311 (343)
T ss_dssp             CEEEEECCG
T ss_pred             cEEEEeCcc
Confidence            988887643

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.07  E-value=3e-08  Score=83.41  Aligned_cols=203  Identities=9%  Similarity=0.102  Sum_probs=123.2

Q ss_pred             cccceEEEEEcCC-CCEEEEeeCCCcEEEEEeCCCCceee-EEE-ec-cccCeEEEEecCCCCCCEEEEeeCC-------
Q 036510           10 HEDTVHDVAMDYY-GKRLATASSDYSIKIIGVGNNTSQHL-AKL-SG-HKGAVWEVAWAHPKFGSILASCSFD-------   78 (288)
Q Consensus        10 h~~~v~~~~~s~~-g~~l~s~~~d~~i~lwd~~~~~~~~~-~~~-~~-h~~~v~~~~~~~~~~~~~l~s~s~d-------   78 (288)
                      +...+.++.++++ |+++++.. ...|.+|+.+ +....+ ... .+ +...++++++.++  ++++++...+       
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~--g~l~v~~~~~~~~~~~~  144 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYE--GNLWITAPAGEVAPADY  144 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTT--SCEEEEECBCBCTTSCC
T ss_pred             CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCC--CCEEEEecCcccccccc
Confidence            4567889999999 77666554 4478888875 322111 110 01 1235788998754  7777777655       


Q ss_pred             --------CcEEEeecCCCCceEEeEEeecCCCceeEEEec----cCCCCeEEEEEeCCCcEEEEeecCCCCeee---EE
Q 036510           79 --------GTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWA----PHELGLCLACGSSDGNISVFTARADGGWDT---SR  143 (288)
Q Consensus        79 --------~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~----p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~---~~  143 (288)
                              +.|..++.. +. ..  . +..+......++|+    |++ ..++++...++.|.+|+....+....   ..
T Consensus       145 ~~~~~~~~~~l~~~~~~-g~-~~--~-~~~~~~~~~~i~~~~~~d~dg-~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~  218 (314)
T 1pjx_A          145 TRSMQEKFGSIYCFTTD-GQ-MI--Q-VDTAFQFPNGIAVRHMNDGRP-YQLIVAETPTKKLWSYDIKGPAKIENKKVWG  218 (314)
T ss_dssp             CBTTSSSCEEEEEECTT-SC-EE--E-EEEEESSEEEEEEEECTTSCE-EEEEEEETTTTEEEEEEEEETTEEEEEEEEE
T ss_pred             cccccCCCCeEEEECCC-CC-EE--E-eccCCCCcceEEEecccCCCC-CEEEEEECCCCeEEEEECCCCCccccceEEE
Confidence                    456666553 22 21  1 11223456888999    873 13455556678999999762222211   11


Q ss_pred             eeccCC-CCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCC
Q 036510          144 IDQAHP-VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLG  222 (288)
Q Consensus       144 ~~~~~~-~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~  222 (288)
                      ....+. .....+.+++++              ++.++...++.|.+||..++.    ....+..+...+.++.|+|++ 
T Consensus       219 ~~~~~~~~~p~~i~~d~~G--------------~l~v~~~~~~~i~~~d~~~g~----~~~~~~~~~~~~~~i~~~~dg-  279 (314)
T 1pjx_A          219 HIPGTHEGGADGMDFDEDN--------------NLLVANWGSSHIEVFGPDGGQ----PKMRIRCPFEKPSNLHFKPQT-  279 (314)
T ss_dssp             ECCCCSSCEEEEEEEBTTC--------------CEEEEEETTTEEEEECTTCBS----CSEEEECSSSCEEEEEECTTS-
T ss_pred             ECCCCCCCCCCceEECCCC--------------CEEEEEcCCCEEEEEcCCCCc----EeEEEeCCCCCceeEEECCCC-
Confidence            112222 446677888775              566776678899999976442    222334455678999999874 


Q ss_pred             CCCc-EEEEEeCCCcEEEEEeec
Q 036510          223 LPKS-TIASASEDGKVIIWTVAR  244 (288)
Q Consensus       223 ~~~~-~l~s~s~D~~i~iw~~~~  244 (288)
                         . ++++...++.|..|++..
T Consensus       280 ---~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          280 ---KTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             ---SEEEEEETTTTEEEEEECSS
T ss_pred             ---CEEEEEeCCCCeEEEEeCCC
Confidence               4 556666778999998764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.01  E-value=1.6e-07  Score=78.94  Aligned_cols=194  Identities=12%  Similarity=0.098  Sum_probs=114.9

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEec--cccCeEEEEecCCCCCCEEEEeeC---------CC
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSG--HKGAVWEVAWAHPKFGSILASCSF---------DG   79 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~---------d~   79 (288)
                      ...+.++.++++|+++++.  +..|.+||...+..+.+.....  ....++.++++++  |+++++...         ..
T Consensus        53 ~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~d--G~l~~~~~~~~~~~~~~~~~  128 (297)
T 3g4e_A           53 DAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPA--GRYFAGTMAEETAPAVLERH  128 (297)
T ss_dssp             SSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTT--SCEEEEEEECCSBTTBCCTT
T ss_pred             CCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCC--CCEEEecCCcccccccccCC
Confidence            4578899999999966654  5678888875433222222211  1234788998754  777765432         23


Q ss_pred             cEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeec-CCCCeeeEEe---eccCCCCeeEE
Q 036510           80 TVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTAR-ADGGWDTSRI---DQAHPVGVTSV  155 (288)
Q Consensus        80 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~-~~~~~~~~~~---~~~~~~~v~~i  155 (288)
                      ...||.+........   +..+....+.++|+|++ ..++++.+.++.|..|++. ..+.....+.   ...+......+
T Consensus       129 ~~~l~~~d~~g~~~~---~~~~~~~pngi~~spdg-~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~  204 (297)
T 3g4e_A          129 QGALYSLFPDHHVKK---YFDQVDISNGLDWSLDH-KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGM  204 (297)
T ss_dssp             CEEEEEECTTSCEEE---EEEEESBEEEEEECTTS-CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEE
T ss_pred             CcEEEEEECCCCEEE---EeeccccccceEEcCCC-CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCee
Confidence            456666543332211   22223456899999984 3355666778899999974 2332221111   11122345667


Q ss_pred             EeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEec-CCCCCCCcEEEEEeC
Q 036510          156 SWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWA-PNLGLPKSTIASASE  233 (288)
Q Consensus       156 ~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~s-p~~~~~~~~l~s~s~  233 (288)
                      .+++++              ++.++....+.|..||..++.    .+..+..+...+.+++|. |+.   ..++++...
T Consensus       205 ~~d~~G--------------~lwva~~~~~~v~~~d~~tG~----~~~~i~~p~~~~t~~~f~g~d~---~~L~vt~~~  262 (297)
T 3g4e_A          205 CIDAEG--------------KLWVACYNGGRVIRLDPVTGK----RLQTVKLPVDKTTSCCFGGKNY---SEMYVTCAR  262 (297)
T ss_dssp             EEBTTS--------------CEEEEEETTTEEEEECTTTCC----EEEEEECSSSBEEEEEEESGGG---CEEEEEEBC
T ss_pred             EECCCC--------------CEEEEEcCCCEEEEEcCCCce----EEEEEECCCCCceEEEEeCCCC---CEEEEEcCC
Confidence            777765              556666667789999987652    334445555678999998 764   234455544

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.95  E-value=5.1e-07  Score=79.52  Aligned_cols=198  Identities=10%  Similarity=-0.042  Sum_probs=120.3

Q ss_pred             cCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCC--cEEEEee
Q 036510           56 GAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDG--NISVFTA  133 (288)
Q Consensus        56 ~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~--~i~i~d~  133 (288)
                      ...+.++|++  +++++++...++.|++||...+.   ....... ..... ++|+|+  +..++.+..++  .|..++.
T Consensus       131 ~~P~~la~d~--~g~lyv~d~~~~~I~~id~~~g~---~~~~~~~-~~~~~-ia~~~~--g~~l~~~d~~~~~~I~~~d~  201 (409)
T 3hrp_A          131 KYMWGIAAVG--NNTVLAYQRDDPRVRLISVDDNK---VTTVHPG-FKGGK-PAVTKD--KQRVYSIGWEGTHTVYVYMK  201 (409)
T ss_dssp             CCEEEEEECS--TTEEEEEETTTTEEEEEETTTTE---EEEEEET-CCBCB-CEECTT--SSEEEEEBSSTTCEEEEEEG
T ss_pred             CCceEEEEeC--CCCEEEEecCCCcEEEEECCCCE---EEEeecc-CCCCc-eeEecC--CCcEEEEecCCCceEEEEEc
Confidence            3568899975  37788888888999999986543   1122222 22333 889987  45566666655  6777776


Q ss_pred             cCCCCeeeEEeecc-CCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeec--cccCCc
Q 036510          134 RADGGWDTSRIDQA-HPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPA--LQMHTD  210 (288)
Q Consensus       134 ~~~~~~~~~~~~~~-~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~h~~  210 (288)
                      .............. .......+.++|+.              ..|+.+..++.|..||..++..  ..+..  ..++..
T Consensus       202 ~~~~~~~~~g~~~~~~~~~p~~iav~p~~--------------g~lyv~d~~~~I~~~d~~~~~~--~~~~~~~~~g~~~  265 (409)
T 3hrp_A          202 ASGWAPTRIGQLGSTFSGKIGAVALDETE--------------EWLYFVDSNKNFGRFNVKTQEV--TLIKQLELSGSLG  265 (409)
T ss_dssp             GGTTCEEEEEECCTTSCSCCCBCEECTTS--------------SEEEEECTTCEEEEEETTTCCE--EEEEECCCCSCCC
T ss_pred             CCCceeEEeeeccchhcCCcEEEEEeCCC--------------CeEEEEECCCcEEEEECCCCCE--EEEecccccCCCC
Confidence            54322111111111 33456677788743              2344456678899999766531  11110  122222


Q ss_pred             ce--EEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeecc---------------ccCeEEEEeecCCCEE
Q 036510          211 WV--RDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDF---------------KTPVYRVSWSLTGNIL  273 (288)
Q Consensus       211 ~V--~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~---------------~~~i~~~~~spdg~~l  273 (288)
                      .-  +.+.|+|+.   +.++++-..++.|+.|+....     ...+.+.               -.....++++|+|+++
T Consensus       266 ~~P~~~ia~~p~~---g~lyv~d~~~~~I~~~~~~g~-----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~ly  337 (409)
T 3hrp_A          266 TNPGPYLIYYFVD---SNFYMSDQNLSSVYKITPDGE-----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFY  337 (409)
T ss_dssp             CSSCCEEEEETTT---TEEEEEETTTTEEEEECTTCC-----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEE
T ss_pred             CCccccEEEeCCC---CEEEEEeCCCCEEEEEecCCC-----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEE
Confidence            22  389999953   457777777888999975421     1112111               1347899999999977


Q ss_pred             EEEe-CCCcEEEeE
Q 036510          274 AVAD-GNNNVTLWE  286 (288)
Q Consensus       274 ~s~~-~d~~v~~w~  286 (288)
                      ++-. .++.|+.|+
T Consensus       338 vad~~~~~~I~~~~  351 (409)
T 3hrp_A          338 IVDGFKGYCLRKLD  351 (409)
T ss_dssp             EEETTTTCEEEEEE
T ss_pred             EEeCCCCCEEEEEE
Confidence            7666 788999998

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.87  E-value=7.2e-07  Score=77.50  Aligned_cols=239  Identities=11%  Similarity=0.125  Sum_probs=131.1

Q ss_pred             EEEEcCCCCEEEEee----------CCCcEEEEEeCCCCceeeEEEeccc-------cCeEEEEecCCCCCCEEEEeeC-
Q 036510           16 DVAMDYYGKRLATAS----------SDYSIKIIGVGNNTSQHLAKLSGHK-------GAVWEVAWAHPKFGSILASCSF-   77 (288)
Q Consensus        16 ~~~~s~~g~~l~s~~----------~d~~i~lwd~~~~~~~~~~~~~~h~-------~~v~~~~~~~~~~~~~l~s~s~-   77 (288)
                      .+.++|||++|+.++          .+++|.+||...  .+.+..+.-..       ..-..++++++  |+++..+.. 
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t--~~v~~~I~v~~g~r~~~g~~P~~~a~spD--Gk~lyVan~~  157 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT--LLPTADIELPDAPRFLVGTYPWMTSLTPD--GKTLLFYQFS  157 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT--CCEEEEEEETTCCCCCBSCCGGGEEECTT--SSEEEEEECS
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCC--CeEEEEEECCCccccccCCCCceEEEcCC--CCEEEEEEcC
Confidence            388999999887665          367899999854  34455543111       12356888865  777766653 


Q ss_pred             -CCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEE
Q 036510           78 -DGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVS  156 (288)
Q Consensus        78 -d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~  156 (288)
                       +++|.++|..+.+   ...++... +   |..+.|.+ .+.+++.+.||++.+.++...+.... . ...+        
T Consensus       158 ~~~~VsVID~~t~~---vv~tI~v~-g---~~~~~P~g-~~~~~~~~~DG~~~~v~~~~~g~v~~-~-~~~~--------  219 (386)
T 3sjl_D          158 PAPAVGVVDLEGKA---FKRMLDVP-D---CYHIFPTA-PDTFFMHCRDGSLAKVAFGTEGTPEI-T-HTEV--------  219 (386)
T ss_dssp             SSCEEEEEETTTTE---EEEEEECC-S---EEEEEEEE-TTEEEEEETTSCEEEEECCSSSCCEE-E-ECCC--------
T ss_pred             CCCeEEEEECCCCc---EEEEEECC-C---cceeecCC-CceeEEECCCCCEEEEECCCCCeEEE-e-ecce--------
Confidence             7899999998754   33344321 1   22233443 34456778899998888875333211 1 1101        


Q ss_pred             eCCCCCCCceec-cccc-CCCceeEEeecCCcEEEEEEeCCceeeeeeeccc----------cCCcceEEEEecCCCCCC
Q 036510          157 WAPSTAPGALVG-SGFL-DPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQ----------MHTDWVRDVAWAPNLGLP  224 (288)
Q Consensus       157 ~~p~~~~~~~~~-~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----------~h~~~V~~v~~sp~~~~~  224 (288)
                      +.+...  .++. ..+. .+++++. .+.++.+.+.|+.++..  +....+.          -.......+.++|+.   
T Consensus       220 ~~~~~~--~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~--~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~---  291 (386)
T 3sjl_D          220 FHPEDE--FLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDA--KFLPAVEALTEAERADGWRPGGWQQVAYHRAL---  291 (386)
T ss_dssp             CSCTTS--CBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSC--EECCCEESSCHHHHHTTEEECSSSCEEEETTT---
T ss_pred             eccccc--cccccceeEcCCCcEEE-EeCCCEEEEEECCCCcc--eeecceeccccccccccccCCCcceeeECCCC---
Confidence            111110  0000 0111 1223333 45578999999865421  1111111          111223446777875   


Q ss_pred             CcEEEEEeC---------CCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCC-EEEEEe-CCCcEEEeEcC
Q 036510          225 KSTIASASE---------DGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGN-ILAVAD-GNNNVTLWEEA  288 (288)
Q Consensus       225 ~~~l~s~s~---------D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~-~l~s~~-~d~~v~~w~~~  288 (288)
                      ..+.++-..         .++|-+.|+...+.   ...+ .....+.+++|+|||+ +|+++. .+++|.++|.+
T Consensus       292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv---~~~i-~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~  362 (386)
T 3sjl_D          292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGER---LAKF-EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAE  362 (386)
T ss_dssp             TEEEEEEEECCTTCTTSCEEEEEEEETTTCCE---EEEE-EEEEEECEEEECSSSSCEEEEEETTTTEEEEEETT
T ss_pred             CeEEEEeccccccccCCCCCEEEEEECCCCeE---EEEE-ECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence            334444321         24677887765321   1111 1234678999999997 666654 58999999953

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.81  E-value=2.2e-06  Score=75.35  Aligned_cols=229  Identities=11%  Similarity=0.078  Sum_probs=128.5

Q ss_pred             CCCCEE-EEeeCCCcEEEEEeCCC--CceeeEEEe--------ccccCeEEEEecCCCCCCEEEEeeCC------CcEEE
Q 036510           21 YYGKRL-ATASSDYSIKIIGVGNN--TSQHLAKLS--------GHKGAVWEVAWAHPKFGSILASCSFD------GTVII   83 (288)
Q Consensus        21 ~~g~~l-~s~~~d~~i~lwd~~~~--~~~~~~~~~--------~h~~~v~~~~~~~~~~~~~l~s~s~d------~~v~i   83 (288)
                      +++++| +++-.+++|.+.|+...  ..+...++.        +. ..-..+...++  | +++++..+      +.+.+
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~-s~Ph~~~~~pd--G-i~Vs~~g~~~g~~~g~v~v  168 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGY-SRLHTVHCGPD--A-IYISALGNEEGEGPGGILM  168 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCE-EEEEEEEECSS--C-EEEEEEEETTSCSCCEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCC-CcccceeECCC--e-EEEEcCCCcCCCCCCeEEE
Confidence            777775 45667889999998422  234455552        11 12234555543  6 77777666      78999


Q ss_pred             eecCCCCceEEeEEeec--CC-CceeEEEeccCCCCeEEEEEe-------------------CCCcEEEEeecCCCCeee
Q 036510           84 WKEGNSNEWIKDHVFED--HK-SSVNSIDWAPHELGLCLACGS-------------------SDGNISVFTARADGGWDT  141 (288)
Q Consensus        84 wd~~~~~~~~~~~~~~~--h~-~~v~~l~~~p~~~~~~l~sg~-------------------~d~~i~i~d~~~~~~~~~  141 (288)
                      .|..+.+   ....++.  .. ..-+.+.|+|+.  +.+++..                   .+++|.+||+........
T Consensus       169 lD~~T~~---v~~~~~~~~~~~~~~Yd~~~~p~~--~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t  243 (462)
T 2ece_A          169 LDHYSFE---PLGKWEIDRGDQYLAYDFWWNLPN--EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS  243 (462)
T ss_dssp             ECTTTCC---EEEECCSBCTTCCCCCCEEEETTT--TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE
T ss_pred             EECCCCe---EEEEEccCCCCccccceEEECCCC--CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE
Confidence            9987654   2333431  11 223457789984  4555553                   368999999986422211


Q ss_pred             EEeeccCC-CCeeEEE--eCCCCCCCceecccccCCCceeEEee-----cCCcEEEEEEeCCceeeeeeecccc------
Q 036510          142 SRIDQAHP-VGVTSVS--WAPSTAPGALVGSGFLDPVQKLCSGG-----CDNTVKVWKLYNGIWKMDCFPALQM------  207 (288)
Q Consensus       142 ~~~~~~~~-~~v~~i~--~~p~~~~~~~~~~~~~~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~~~~------  207 (288)
                        +.-+.. .....+.  |+|++.             ..++++.     .+++|.+|....+.+....+..+..      
T Consensus       244 --I~vg~~g~~P~~i~f~~~Pdg~-------------~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~  308 (462)
T 2ece_A          244 --LTLGEENRMALELRPLHDPTKL-------------MGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGN  308 (462)
T ss_dssp             --EESCTTEEEEEEEEECSSTTCC-------------EEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSS
T ss_pred             --EecCCCCCccceeEeeECCCCC-------------EEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccc
Confidence              111111 1233344  488873             2344444     5667877766555433222110100      


Q ss_pred             ----------CCcceEEEEecCCCCCCCcEEEEEe-CCCcEEEEEeecCCCcccceEeeccc--------------cCeE
Q 036510          208 ----------HTDWVRDVAWAPNLGLPKSTIASAS-EDGKVIIWTVAREGDQWEGKVLHDFK--------------TPVY  262 (288)
Q Consensus       208 ----------h~~~V~~v~~sp~~~~~~~~l~s~s-~D~~i~iw~~~~~~~~~~~~~~~~~~--------------~~i~  262 (288)
                                -......+.+|||+    ++|-.+. ..+.|.+||+...........+...+              ....
T Consensus       309 lp~~~~~f~~~~~~pa~I~lS~DG----rfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr  384 (462)
T 2ece_A          309 LPEILKPFKAVPPLVTDIDISLDD----KFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQ  384 (462)
T ss_dssp             CCGGGGGGTEECCCCCCEEECTTS----CEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCC
T ss_pred             ccccccccccCCCceeEEEECCCC----CEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCC
Confidence                      01346788999985    4444444 47899999986432221112221110              1246


Q ss_pred             EEEeecCCCEEEEEe
Q 036510          263 RVSWSLTGNILAVAD  277 (288)
Q Consensus       263 ~~~~spdg~~l~s~~  277 (288)
                      .++++|||++|+++.
T Consensus       385 ~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          385 MLEISRDGRRVYVTN  399 (462)
T ss_dssp             CEEECTTSSEEEEEC
T ss_pred             EEEEcCCCCEEEEEc
Confidence            799999999999987

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.80  E-value=2.5e-07  Score=87.00  Aligned_cols=203  Identities=13%  Similarity=0.029  Sum_probs=116.6

Q ss_pred             ccccCeEEEEecCCCCCCEEEE-----eeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCC-
Q 036510           53 GHKGAVWEVAWAHPKFGSILAS-----CSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDG-  126 (288)
Q Consensus        53 ~h~~~v~~~~~~~~~~~~~l~s-----~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~-  126 (288)
                      +|...+..++||++  |++|+-     |+...+|++||+.++... . ..+..  .....++|+ |+  ..++.++.+. 
T Consensus       126 ~~~~~l~~~~~SpD--g~~lAy~~~~~G~~~~~i~v~dl~tg~~~-~-~~~~~--~k~~~~~Ws-Dg--~~l~y~~~~~~  196 (693)
T 3iuj_A          126 DGTTALDQLSFSRD--GRILAYSLSLAGSDWREIHLMDVESKQPL-E-TPLKD--VKFSGISWL-GN--EGFFYSSYDKP  196 (693)
T ss_dssp             TSCCEEEEEEECTT--SSEEEEEEECSSCCEEEEEEEETTTCSEE-E-EEEEE--EESCCCEEE-TT--TEEEEEESSCC
T ss_pred             CCcEEEEEEEECCC--CCEEEEEEecCCCceEEEEEEECCCCCCC-c-cccCC--ceeccEEEe-CC--CEEEEEEecCc
Confidence            35557888999875  888873     444468999999876522 1 12221  113577899 84  4456665553 


Q ss_pred             ------------cEEEEeecCCCCeeeEE-eecc-CCCCeeEEEeCCCCCCCceecccccCCCceeEEee---cCCcEEE
Q 036510          127 ------------NISVFTARADGGWDTSR-IDQA-HPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGG---CDNTVKV  189 (288)
Q Consensus       127 ------------~i~i~d~~~~~~~~~~~-~~~~-~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~---~d~~i~i  189 (288)
                                  .|++|++.++....... .... |+.....+.|+|++.             .++++.+   .++.|.+
T Consensus       197 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~-------------~l~~~~~~~~~~~~i~~  263 (693)
T 3iuj_A          197 DGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDR-------------FLLISAANSTSGNRLYV  263 (693)
T ss_dssp             C-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSC-------------EEEEEEESSSSCCEEEE
T ss_pred             ccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCC-------------EEEEEEccCCCCcEEEE
Confidence                        38888876543222211 1223 455578899999973             2333333   2357889


Q ss_pred             EEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCC---CcEEEEEeecCCCcccceEeeccccCeEEEEe
Q 036510          190 WKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASED---GKVIIWTVAREGDQWEGKVLHDFKTPVYRVSW  266 (288)
Q Consensus       190 wd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D---~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~  266 (288)
                      +|+.++...   ...+..+.+..... |++++   +.+++....|   +.|..+++.... ...-+.+..+...+.  .|
T Consensus       264 ~d~~~~~~~---~~~l~~~~~~~~~~-~~~~g---~~l~~~t~~~~~~~~l~~~d~~~~~-~~~~~~l~~~~~~~~--~~  333 (693)
T 3iuj_A          264 KDLSQENAP---LLTVQGDLDADVSL-VDNKG---STLYLLTNRDAPNRRLVTVDAANPG-PAHWRDLIPERQQVL--TV  333 (693)
T ss_dssp             EETTSTTCC---CEEEECSSSSCEEE-EEEET---TEEEEEECTTCTTCEEEEEETTSCC-GGGCEEEECCCSSCE--EE
T ss_pred             EECCCCCCc---eEEEeCCCCceEEE-EeccC---CEEEEEECCCCCCCEEEEEeCCCCC-ccccEEEecCCCCEE--EE
Confidence            998664211   12233444444444 55553   2445555544   467778776432 111123334444444  99


Q ss_pred             ecCCCEEEEEeCCC---cEEEeEc
Q 036510          267 SLTGNILAVADGNN---NVTLWEE  287 (288)
Q Consensus       267 spdg~~l~s~~~d~---~v~~w~~  287 (288)
                      +|+|+.|+....++   .|++|+.
T Consensus       334 s~~g~~lv~~~~~~g~~~l~~~d~  357 (693)
T 3iuj_A          334 HSGSGYLFAEYMVDATARVEQFDY  357 (693)
T ss_dssp             EEETTEEEEEEEETTEEEEEEECT
T ss_pred             EEECCEEEEEEEECCeeEEEEEEC
Confidence            99999888776544   5777764

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.80  E-value=9.2e-07  Score=78.02  Aligned_cols=237  Identities=9%  Similarity=0.053  Sum_probs=132.2

Q ss_pred             EEEEcCCCCEEEEee----------CCCcEEEEEeCCCCceeeEEEecc-------ccCeEEEEecCCCCCCEEEEeeC-
Q 036510           16 DVAMDYYGKRLATAS----------SDYSIKIIGVGNNTSQHLAKLSGH-------KGAVWEVAWAHPKFGSILASCSF-   77 (288)
Q Consensus        16 ~~~~s~~g~~l~s~~----------~d~~i~lwd~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~~l~s~s~-   77 (288)
                      .+.++|||++|+.+.          .++.|.++|...  .+.+..+.--       ...-..+.++++  |+++..+.. 
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t--~~vv~~I~v~g~~r~~~g~~P~~~~~spD--Gk~lyV~n~~  197 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT--FLPIADIELPDAPRFLVGTYQWMNALTPD--NKNLLFYQFS  197 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT--CCEEEEEEETTCCCCCBSCCGGGSEECTT--SSEEEEEECS
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC--CcEEEEEECCCccccccCCCcceEEEcCC--CCEEEEEecC
Confidence            688999998887776          367899998753  3445544311       112345788765  777777653 


Q ss_pred             -CCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEE--eeccCCCC-ee
Q 036510           78 -DGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSR--IDQAHPVG-VT  153 (288)
Q Consensus        78 -d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~-v~  153 (288)
                       +++|.+.|..+.+   ....+....    +....|++. ..+++.+.||++.+.+...+ ......  ........ ..
T Consensus       198 ~~~~VsVID~~t~k---vv~~I~v~g----~~~~~p~g~-~~~v~~~~dG~~~~V~~~~~-~v~~~~~~~~~v~~~p~~~  268 (426)
T 3c75_H          198 PAPAVGVVDLEGKT---FDRMLDVPD----CYHIFPASP-TVFYMNCRDGSLARVDFADG-ETKVTNTEVFHTEDELLIN  268 (426)
T ss_dssp             SSCEEEEEETTTTE---EEEEEECCS----EEEEEEEET-TEEEEEETTSSEEEEECCTT-CCEEEECCCCSCTTSCBCS
T ss_pred             CCCeEEEEECCCCe---EEEEEEcCC----ceeeccCCC-cEEEEEcCCCCEEEEECCCC-cEEEEeeeeeccCCCceee
Confidence             6899999987654   233343211    133345432 34556677888887777322 221100  00000000 01


Q ss_pred             EEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccc----------cCCcceEEEEecCCCCC
Q 036510          154 SVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQ----------MHTDWVRDVAWAPNLGL  223 (288)
Q Consensus       154 ~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----------~h~~~V~~v~~sp~~~~  223 (288)
                      .+.+.+++              ..++..+..+.+.+.|+..+...  .+..+.          ........+.++|++  
T Consensus       269 ~~~~~~dg--------------~~~~~~s~~g~V~ViD~~~~~~~--v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg--  330 (426)
T 3c75_H          269 HPAFSLRS--------------GRLVWPTYTGKIFQADLTAEGAT--FRAPIEALTEAERADDWRPGGWQQTAYHRQS--  330 (426)
T ss_dssp             CCEECTTT--------------CEEEEEBTTSEEEEEEECSSCEE--ECCCEESSCTTTGGGTEEECSSSCEEEEGGG--
T ss_pred             EeeecCCC--------------CEEEEEeCCCcEEEEeccCCceE--EeeeeeeccccccccccccCCceeeEEcCCC--
Confidence            12334443              34444456788999998654211  111100          011112236888875  


Q ss_pred             CCcEEEEEe---------CCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCC-EEEEEe-CCCcEEEeEcC
Q 036510          224 PKSTIASAS---------EDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGN-ILAVAD-GNNNVTLWEEA  288 (288)
Q Consensus       224 ~~~~l~s~s---------~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~-~l~s~~-~d~~v~~w~~~  288 (288)
                       ...+++-.         .+++|.+.|....+.   ...+ ........++|+|||+ +++++. .+++|.|+|.+
T Consensus       331 -~rlyVa~~~~~~gthk~~s~~VsVID~~T~kv---v~~I-~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~  401 (426)
T 3c75_H          331 -DRIYLLVDQRDEWKHKAASRFVVVLNAETGER---INKI-ELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAA  401 (426)
T ss_dssp             -TEEEEEEEECCTTCTTSCEEEEEEEETTTCCE---EEEE-EEEEEECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred             -CEEEEEecccccccccCCCCEEEEEECCCCeE---EEEE-ECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence             23444432         135799999865421   1121 1233578899999999 888888 58999999953

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.75  E-value=5.2e-06  Score=70.63  Aligned_cols=193  Identities=10%  Similarity=0.027  Sum_probs=107.6

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEec-c-ccCeEEEEecCCCCCCEEEEeeCC----CcEEEe
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSG-H-KGAVWEVAWAHPKFGSILASCSFD----GTVIIW   84 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~-h-~~~v~~~~~~~~~~~~~l~s~s~d----~~v~iw   84 (288)
                      ...+.++.++++|+++++. .+ .+.+||...+....+..... + ...+++++++++  |+++++...+    +...||
T Consensus        89 ~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~--G~l~v~~~~~~~~~~~~~l~  164 (326)
T 2ghs_A           89 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPS--GALWIGTMGRKAETGAGSIY  164 (326)
T ss_dssp             SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTT--SCEEEEEEETTCCTTCEEEE
T ss_pred             CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCC--CCEEEEeCCCcCCCCceEEE
Confidence            3568889999999887754 33 48888875433222221111 1 235788999764  7776655422    234555


Q ss_pred             ecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeec--CC-CCe--eeEEeeccCCCCeeEEEeCC
Q 036510           85 KEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTAR--AD-GGW--DTSRIDQAHPVGVTSVSWAP  159 (288)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~--~~-~~~--~~~~~~~~~~~~v~~i~~~p  159 (288)
                      .+.+ ...   ..+..+....+.++|+|++ ..++++.+.++.|.+|++.  .+ ...  ..+............+.+++
T Consensus       165 ~~~~-g~~---~~~~~~~~~~~~i~~s~dg-~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~  239 (326)
T 2ghs_A          165 HVAK-GKV---TKLFADISIPNSICFSPDG-TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA  239 (326)
T ss_dssp             EEET-TEE---EEEEEEESSEEEEEECTTS-CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT
T ss_pred             EEeC-CcE---EEeeCCCcccCCeEEcCCC-CEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC
Confidence            4433 222   1122223456789999984 2344555667899999985  22 111  11111111223345666666


Q ss_pred             CCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEec-CCCCCCCcEEEEEeCC
Q 036510          160 STAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWA-PNLGLPKSTIASASED  234 (288)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~s-p~~~~~~~~l~s~s~D  234 (288)
                      ++              ++.++...++.|.+||. ++.    .+..+..+...+.+++|+ |+.   ..++++...+
T Consensus       240 ~G--------------~lwva~~~~~~v~~~d~-~g~----~~~~i~~~~~~~~~~af~g~d~---~~L~vt~~~~  293 (326)
T 2ghs_A          240 EG--------------HIWNARWGEGAVDRYDT-DGN----HIARYEVPGKQTTCPAFIGPDA---SRLLVTSARE  293 (326)
T ss_dssp             TS--------------CEEEEEETTTEEEEECT-TCC----EEEEEECSCSBEEEEEEESTTS---CEEEEEEBCT
T ss_pred             CC--------------CEEEEEeCCCEEEEECC-CCC----EEEEEECCCCCcEEEEEecCCC---CEEEEEecCC
Confidence            64              55555555678999986 332    223344455568999998 764   2344444444

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.69  E-value=1.6e-08  Score=87.91  Aligned_cols=179  Identities=13%  Similarity=0.135  Sum_probs=90.1

Q ss_pred             CCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccC
Q 036510           69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAH  148 (288)
Q Consensus        69 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~  148 (288)
                      +..+++++.|+.+..||..+++.   ...+..  +.+.+..+.++  +.++++++.|+.|+.||.+++...-......  
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~---~W~~~~--~~~~s~p~~~~--g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~--   79 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSI---KWTLKE--DPVLQVPTHVE--EPAFLPDPNDGSLYTLGSKNNEGLTKLPFTI--   79 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCE---EEEEEC--CCSCCCC-------CCEEECTTTCCEEEC-----CCSEECSCCH--
T ss_pred             CCEEEEEcCCCEEEEEECCCCCE---EEEecC--CCceecceEcC--CCEEEEeCCCCEEEEEECCCCceeeeeeccC--
Confidence            67899999999999999988763   333433  34554444444  4456777899999999987654321111000  


Q ss_pred             CCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEE
Q 036510          149 PVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTI  228 (288)
Q Consensus       149 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l  228 (288)
                      +..+   .-+|           .......+++++.|+.+..||..++.    .+..+..+.    .+.++|+    +..|
T Consensus        80 ~~~~---~~sp-----------~~~~~~~v~~g~~dg~v~a~D~~tG~----~~w~~~~~~----~~~~~p~----~~~v  133 (369)
T 2hz6_A           80 PELV---QASP-----------CRSSDGILYMGKKQDIWYVIDLLTGE----KQQTLSSAF----ADSLSPS----TSLL  133 (369)
T ss_dssp             HHHH---TTCS-----------CC-----CCCCEEEEEEEEECCC----------------------------------E
T ss_pred             cccc---ccCc-----------eEecCCEEEEEeCCCEEEEEECCCCc----EEEEecCCC----ccccccc----CCEE
Confidence            0000   0011           11012456778889999999998873    333333332    2345664    3578


Q ss_pred             EEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCC---CEEEEEeCCCcEEEeEc
Q 036510          229 ASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTG---NILAVADGNNNVTLWEE  287 (288)
Q Consensus       229 ~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg---~~l~s~~~d~~v~~w~~  287 (288)
                      ++++.|+.|+.||.+..+..+.... ...    ....+++++   ..+++++.|+.|+.||.
T Consensus       134 ~~~~~dg~v~a~d~~tG~~~W~~~~-~~~----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~  190 (369)
T 2hz6_A          134 YLGRTEYTITMYDTKTRELRWNATY-FDY----AASLPEDDVDYKMSHFVSNGDGLVVTVDS  190 (369)
T ss_dssp             EEEEEEEEEECCCSSSSSCCCEEEE-EEE----CCBCCCCCTTCCCCEEEEETSCEEEEECT
T ss_pred             EEEecCCEEEEEECCCCCEEEeEec-ccc----cCccccCCccccceEEEECCCCEEEEEEC
Confidence            8999999999999876543333221 111    123334432   55677888999998884

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.68  E-value=1.2e-08  Score=88.70  Aligned_cols=207  Identities=14%  Similarity=0.087  Sum_probs=103.8

Q ss_pred             CCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecC
Q 036510           22 YGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDH  101 (288)
Q Consensus        22 ~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h  101 (288)
                      ++..+++++.|+.+..||...  ++.+.++..  +.+.+..+..  ++.++++++.|+.++.||..+++..   ..+..+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~t--G~~~W~~~~--~~~~s~p~~~--~g~~~v~~s~dg~l~a~d~~tG~~~---w~~~~~   78 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRT--GSIKWTLKE--DPVLQVPTHV--EEPAFLPDPNDGSLYTLGSKNNEGL---TKLPFT   78 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTT--CCEEEEEEC--CCSCCCC-------CCEEECTTTCCEEEC-----CCS---EECSCC
T ss_pred             eCCEEEEEcCCCEEEEEECCC--CCEEEEecC--CCceecceEc--CCCEEEEeCCCCEEEEEECCCCcee---eeeecc
Confidence            467899999999999999754  355655554  3444333332  3668888899999999998766531   122211


Q ss_pred             CC-ceeEEEeccCC-CCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeE
Q 036510          102 KS-SVNSIDWAPHE-LGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLC  179 (288)
Q Consensus       102 ~~-~v~~l~~~p~~-~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~  179 (288)
                      .. .+.+   +|-- .+..+++|+.|+.|+.||.+++...  ... ..+.    ...++|.+              ..++
T Consensus        79 ~~~~~~~---sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~--w~~-~~~~----~~~~~p~~--------------~~v~  134 (369)
T 2hz6_A           79 IPELVQA---SPCRSSDGILYMGKKQDIWYVIDLLTGEKQ--QTL-SSAF----ADSLSPST--------------SLLY  134 (369)
T ss_dssp             HHHHHTT---CSCC-----CCCCEEEEEEEEECCC-------------------------------------------EE
T ss_pred             Ccccccc---CceEecCCEEEEEeCCCEEEEEECCCCcEE--EEe-cCCC----cccccccC--------------CEEE
Confidence            11 1110   1110 1234667778899999998876432  111 1111    12334432              6688


Q ss_pred             EeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeecccc
Q 036510          180 SGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKT  259 (288)
Q Consensus       180 s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~  259 (288)
                      .++.|+.|..||..++.    .+..+..+.  .....+.++... ...+..++.|+.|+.||.+..+..+..    ...+
T Consensus       135 ~~~~dg~v~a~d~~tG~----~~W~~~~~~--~~~~~~~~~~~~-~~~v~~~~~dg~v~a~d~~tG~~~W~~----~~~~  203 (369)
T 2hz6_A          135 LGRTEYTITMYDTKTRE----LRWNATYFD--YAASLPEDDVDY-KMSHFVSNGDGLVVTVDSESGDVLWIQ----NYAS  203 (369)
T ss_dssp             EEEEEEEEECCCSSSSS----CCCEEEEEE--ECCBCCCCCTTC-CCCEEEEETSCEEEEECTTTCCEEEEE----ECSS
T ss_pred             EEecCCEEEEEECCCCC----EEEeEeccc--ccCccccCCccc-cceEEEECCCCEEEEEECCCCcEEEEe----cCCC
Confidence            88889999999998773    111111110  111222222111 145778899999999998654322221    2345


Q ss_pred             CeEE-EEeecCCCE
Q 036510          260 PVYR-VSWSLTGNI  272 (288)
Q Consensus       260 ~i~~-~~~spdg~~  272 (288)
                      ++.. ..++++|..
T Consensus       204 pv~~~~~~~~dg~~  217 (369)
T 2hz6_A          204 PVVAFYVWQREGLR  217 (369)
T ss_dssp             CEEEEEECTTSSCE
T ss_pred             ceEEEEEecCCceE
Confidence            5543 456667754

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.68  E-value=7e-05  Score=64.96  Aligned_cols=231  Identities=13%  Similarity=0.024  Sum_probs=125.9

Q ss_pred             EcCCCCEEEEeeC--CC---cEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEee----------CCCcEEE
Q 036510           19 MDYYGKRLATASS--DY---SIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCS----------FDGTVII   83 (288)
Q Consensus        19 ~s~~g~~l~s~~~--d~---~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s----------~d~~v~i   83 (288)
                      ..|+++++.....  ..   +|.++|...  ++.+.++..-..+  .++++++  ++.+..+.          .++.|.+
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t--~~~~~~i~~g~~p--~i~~spD--g~~lyv~n~~~~~~~rg~~~~~v~v  101 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGS--GSILGHVNGGFLP--NPVAAHS--GSEFALASTSFSRIAKGKRTDYVEV  101 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCC--CeEEEEecCCCCC--CeEECCC--CCEEEEEeccccccccCCCCCeEEE
Confidence            4578887776653  23   788888753  4556666543333  8999875  77666654          4788999


Q ss_pred             eecCCCCceEEeEEeecC-------CCceeEEEeccCCCCeEEEEEeC--CCcEEEEeecCCCCeeeEEeeccCCCCeeE
Q 036510           84 WKEGNSNEWIKDHVFEDH-------KSSVNSIDWAPHELGLCLACGSS--DGNISVFTARADGGWDTSRIDQAHPVGVTS  154 (288)
Q Consensus        84 wd~~~~~~~~~~~~~~~h-------~~~v~~l~~~p~~~~~~l~sg~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~  154 (288)
                      +|..+...   ...+...       ...-..+.|+|+  ++.|+.+..  ++.|.++| .++....  ... ..+.   +
T Consensus       102 iD~~t~~~---~~~i~~~~~~~~~~g~~p~~~~~spD--G~~l~v~n~~~~~~v~viD-~t~~~~~--~~i-~~~~---~  169 (373)
T 2mad_H          102 FDPVTFLP---IADIELPDAPRFDVGPYSWMNANTPN--NADLLFFQFAAGPAVGLVV-QGGSSDD--QLL-SSPT---C  169 (373)
T ss_pred             EECCCCcE---EEEEECCCccccccCCCccceEECCC--CCEEEEEecCCCCeEEEEE-CCCCEEe--EEc-CCCc---e
Confidence            99875442   2222211       122457899998  455555543  57899999 6543211  101 1111   2


Q ss_pred             EEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeee---ccccCCcceEEEEecCCCCCCCcEEEEE
Q 036510          155 VSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFP---ALQMHTDWVRDVAWAPNLGLPKSTIASA  231 (288)
Q Consensus       155 i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~h~~~V~~v~~sp~~~~~~~~l~s~  231 (288)
                      +.+.|++.             +.+++.+.|+.+..+|. ++... ....   .+.+.........|.++.    ..++..
T Consensus       170 ~~~~~~~~-------------~~~~~~~~dg~~~~vd~-~g~~~-~~~~~~~~~~~~~p~~~~~~~~~~~----~~~~~~  230 (373)
T 2mad_H          170 YHIHPGAP-------------STFYLLCAQGGLAKTDH-AGGAA-GAGLVGAMLTAAQNLLTQPAQANKS----GRIVWP  230 (373)
T ss_pred             EEEEeCCC-------------ceEEEEcCCCCEEEEEC-CCcEE-EEEeccccccCCcceeecceeEecC----CEEEEE
Confidence            33445442             44666778899999998 65211 0110   011111111223455543    223333


Q ss_pred             eCCCcEEEEEeecCCCcccceEee---c----c---ccCeEEEEeecCCCEEEEEeC----------CCcEEEeEc
Q 036510          232 SEDGKVIIWTVAREGDQWEGKVLH---D----F---KTPVYRVSWSLTGNILAVADG----------NNNVTLWEE  287 (288)
Q Consensus       232 s~D~~i~iw~~~~~~~~~~~~~~~---~----~---~~~i~~~~~spdg~~l~s~~~----------d~~v~~w~~  287 (288)
                      +..+.+.+.|....... ....+.   .    .   .....-++++|||+++.++..          .+.|.+.|.
T Consensus       231 ~~~~~v~vid~~~~~~~-v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~  305 (373)
T 2mad_H          231 VYSGKILQADISAAGAT-NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG  305 (373)
T ss_pred             cCCceEEEEeccCCcce-EeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEEC
Confidence            46778888887532110 001110   0    0   112334789999998888754          357888885

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.66  E-value=2.8e-06  Score=71.48  Aligned_cols=201  Identities=12%  Similarity=0.076  Sum_probs=114.6

Q ss_pred             eEEEeccccCeEEEEecCCCCCC-EEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCC
Q 036510           48 LAKLSGHKGAVWEVAWAHPKFGS-ILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDG  126 (288)
Q Consensus        48 ~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~  126 (288)
                      +..+........+..|+++  ++ ++++...++.|..|+. ++.    ...+..+...+..+.+.|+  +.++++...++
T Consensus        37 ~~~l~~~~~~~egp~~~~~--g~~l~~~d~~~~~i~~~~~-~g~----~~~~~~~~~~~~gl~~d~d--G~l~v~~~~~~  107 (305)
T 3dr2_A           37 LLTLYDQATWSEGPAWWEA--QRTLVWSDLVGRRVLGWRE-DGT----VDVLLDATAFTNGNAVDAQ--QRLVHCEHGRR  107 (305)
T ss_dssp             CEEEECCCSSEEEEEEEGG--GTEEEEEETTTTEEEEEET-TSC----EEEEEESCSCEEEEEECTT--SCEEEEETTTT
T ss_pred             eEEEecCCcCccCCeEeCC--CCEEEEEECCCCEEEEEeC-CCC----EEEEeCCCCccceeeECCC--CCEEEEECCCC
Confidence            4445545556678889764  55 6778888899999987 333    1233345567899999987  56666555567


Q ss_pred             cEEEEeecCCCCeeeEE-eeccC-CCCeeEEEeCCCCCCCceecccccCCCceeEE----eec-------------CCcE
Q 036510          127 NISVFTARADGGWDTSR-IDQAH-PVGVTSVSWAPSTAPGALVGSGFLDPVQKLCS----GGC-------------DNTV  187 (288)
Q Consensus       127 ~i~i~d~~~~~~~~~~~-~~~~~-~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s----~~~-------------d~~i  187 (288)
                      .|..|+.. + ...... ...+. ...+..+.++|++              ++.+|    |..             .+.|
T Consensus       108 ~v~~~~~~-g-~~~~~~~~~~~~~~~~~~~i~~d~dG--------------~l~~td~~~g~~~~~~~~~~~~~~~~~~v  171 (305)
T 3dr2_A          108 AITRSDAD-G-QAHLLVGRYAGKRLNSPNDLIVARDG--------------AIWFTDPPFGLRKPSQGCPADPELAHHSV  171 (305)
T ss_dssp             EEEEECTT-S-CEEEEECEETTEECSCCCCEEECTTS--------------CEEEECCSGGGSCGGGSCCCCCSSSCEEE
T ss_pred             EEEEECCC-C-CEEEEEeccCCCccCCCCCEEECCCC--------------CEEEeCcCCCccccccccccccccCCCeE
Confidence            88888864 2 222111 11111 1235678888876              33443    221             1345


Q ss_pred             EEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCC------CcEEEEEeecCCCcccceEeecc-ccC
Q 036510          188 KVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASED------GKVIIWTVAREGDQWEGKVLHDF-KTP  260 (288)
Q Consensus       188 ~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D------~~i~iw~~~~~~~~~~~~~~~~~-~~~  260 (288)
                      ..+|..++..  +.+   . .....+.++|+|++    +.|..+..+      +.|.+|++.... ......+... ...
T Consensus       172 ~~~d~~~g~~--~~~---~-~~~~p~gl~~spdg----~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~  240 (305)
T 3dr2_A          172 YRLPPDGSPL--QRM---A-DLDHPNGLAFSPDE----QTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGL  240 (305)
T ss_dssp             EEECSSSCCC--EEE---E-EESSEEEEEECTTS----SEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSC
T ss_pred             EEEcCCCCcE--EEE---e-cCCCCcceEEcCCC----CEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCC
Confidence            5555444421  111   1 22345789999985    445444443      789999986432 1111222111 223


Q ss_pred             eEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          261 VYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       261 i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      ...+++.++|++.+ ++.+ .|.+|+
T Consensus       241 pdgi~~d~~G~lwv-~~~~-gv~~~~  264 (305)
T 3dr2_A          241 PDGFCVDRGGWLWS-SSGT-GVCVFD  264 (305)
T ss_dssp             CCSEEECTTSCEEE-CCSS-EEEEEC
T ss_pred             CCeEEECCCCCEEE-ecCC-cEEEEC
Confidence            45688999999544 4444 477776

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.56  E-value=7.9e-06  Score=69.95  Aligned_cols=202  Identities=9%  Similarity=-0.033  Sum_probs=116.5

Q ss_pred             cCeEEEEecCCCCCCEEEEee--CCCcEEEeecCCCCceEEeEEe-------ecCCCceeEEEeccCCCCeEEEEEeC--
Q 036510           56 GAVWEVAWAHPKFGSILASCS--FDGTVIIWKEGNSNEWIKDHVF-------EDHKSSVNSIDWAPHELGLCLACGSS--  124 (288)
Q Consensus        56 ~~v~~~~~~~~~~~~~l~s~s--~d~~v~iwd~~~~~~~~~~~~~-------~~h~~~v~~l~~~p~~~~~~l~sg~~--  124 (288)
                      .....++++++  |++|++..  .++.++||.+.++.    ...+       ..|...+.++++.|+  +.++++-..  
T Consensus        17 ~~p~~va~~~~--g~~~v~~~~~~~~~~~l~~~~~g~----~~~~p~~~~~~~~~~~~p~gv~~d~~--g~L~v~D~g~~   88 (343)
T 2qe8_A           17 LAPGNITLTPD--GRLFLSLHQFYQPEMQVAELTQDG----LIPFPPQSGNAIITFDTVLGIKSDGN--GIVWMLDNGNQ   88 (343)
T ss_dssp             SCEEEEEECTT--SCEEEEECGGGCCSCSEEEEETTE----EEESCCCCSSCCCCCSCEEEEEECSS--SEEEEEECHHH
T ss_pred             CCcceEEECCC--CCEEEEeCCCCCCceEEEEECCCC----eecCCCcccCcccceeEeeEEEEcCC--CcEEEEcCCCC
Confidence            56788999754  88888864  23436677664321    1212       124567899999987  555554433  


Q ss_pred             ---CCcEEEEeecCCCCeeeEEeec---cCCCCeeEEEeCCCCCCCceecccccCCCceeEEee---cCCcEEEEEEeCC
Q 036510          125 ---DGNISVFTARADGGWDTSRIDQ---AHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGG---CDNTVKVWKLYNG  195 (288)
Q Consensus       125 ---d~~i~i~d~~~~~~~~~~~~~~---~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~  195 (288)
                         ++.|.+||+.++..........   .+......+.++|+.             +..+++..   .++.|.+||+.++
T Consensus        89 ~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~-------------g~~yvtd~~~~~~~~i~v~d~~~g  155 (343)
T 2qe8_A           89 SKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIH-------------NFVYISDPAPDDKAALIRVDLQTG  155 (343)
T ss_dssp             HTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTT-------------TEEEEEECCSGGGCEEEEEETTTC
T ss_pred             cCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCC-------------CEEEEEcCccCCCCeEEEEECCCC
Confidence               5789999987653221111111   112234667776643             13445555   6788999998655


Q ss_pred             ceeeeeeeccccC-----------------------------CcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC-
Q 036510          196 IWKMDCFPALQMH-----------------------------TDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE-  245 (288)
Q Consensus       196 ~~~~~~~~~~~~h-----------------------------~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~-  245 (288)
                      ...    ..+.+|                             ...++.++|+|++    ++|..+..++. ++|.+... 
T Consensus       156 ~~~----r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg----~~ly~~~~~~~-~l~~~~~~~  226 (343)
T 2qe8_A          156 LAA----RVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN----EWLYLSPMHST-SMYRIKSAD  226 (343)
T ss_dssp             CEE----EECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTS----CEEEEEESSCS-EEEEEEHHH
T ss_pred             CEE----EEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCC----CEEEEEeCCCC-eEEEEEHHH
Confidence            211    111111                             1236889999974    55666666553 55555321 


Q ss_pred             -CCc--ccce-----EeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          246 -GDQ--WEGK-----VLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       246 -~~~--~~~~-----~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                       ...  ....     ...+.......++++++|.++++...++.|.+||.
T Consensus       227 ~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          227 LSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             HTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred             hcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence             000  0000     00111224567999999999998888999999985

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.55  E-value=1.1e-05  Score=69.93  Aligned_cols=241  Identities=12%  Similarity=-0.001  Sum_probs=123.3

Q ss_pred             CEEEEeeCCC----cEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEee----------CCCcEEEeecCCC
Q 036510           24 KRLATASSDY----SIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCS----------FDGTVIIWKEGNS   89 (288)
Q Consensus        24 ~~l~s~~~d~----~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s----------~d~~v~iwd~~~~   89 (288)
                      +.+++...++    +|.+.|.+  +.+.+.++..-..+  .+.++++  ++++..+.          .+++|.+||..+.
T Consensus        33 ~~yV~~~~~~~~~d~vsvID~~--t~~v~~~i~vG~~P--~i~~spD--g~~lyVan~~~~r~~~G~~~~~VsviD~~T~  106 (368)
T 1mda_H           33 RSHITLPAYFAGTTENWVSCAG--CGVTLGHSLGAFLS--LAVAGHS--GSDFALASTSFARSAKGKRTDYVEVFDPVTF  106 (368)
T ss_dssp             EEEEEECTTTCSSEEEEEEETT--TTEEEEEEEECTTC--EEEECTT--SSCEEEEEEEETTTTSSSEEEEEEEECTTTC
T ss_pred             eEEEECCccCCccceEEEEECC--CCeEEEEEeCCCCC--ceEECCC--CCEEEEEcccccccccCCCCCEEEEEECCCC
Confidence            3455555555    77788874  44667777544455  7999875  55555543          4789999999876


Q ss_pred             CceEEeEEeecC-------CCceeEEEeccCCCCeEEEEEeC--CCcEEE--EeecCCCCeeeEEee-------cc----
Q 036510           90 NEWIKDHVFEDH-------KSSVNSIDWAPHELGLCLACGSS--DGNISV--FTARADGGWDTSRID-------QA----  147 (288)
Q Consensus        90 ~~~~~~~~~~~h-------~~~v~~l~~~p~~~~~~l~sg~~--d~~i~i--~d~~~~~~~~~~~~~-------~~----  147 (288)
                      ..   ...+..+       ......+.++|+  +++++.+..  ++.+.+  +|+.+   .......       .+    
T Consensus       107 ~v---v~~I~v~~~~~~~~g~~P~~ia~SpD--Gk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~  178 (368)
T 1mda_H          107 LP---IADIELPDAPRFSVGPRVHIIGNCAS--SACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATH  178 (368)
T ss_dssp             CE---EEEEEETTSCSCCBSCCTTSEEECTT--SSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEE
T ss_pred             CE---EEEEECCCccccccCCCcceEEEcCC--CCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEE
Confidence            52   3344322       123567899998  444454442  467888  88754   1110000       00    


Q ss_pred             ----CCCCeeEEEeCC----CCCCC----ceeccc----ccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccc-----
Q 036510          148 ----HPVGVTSVSWAP----STAPG----ALVGSG----FLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQ-----  206 (288)
Q Consensus       148 ----~~~~v~~i~~~p----~~~~~----~~~~~~----~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----  206 (288)
                          -...+..+....    ++...    ..+..+    ...++..++-.+. +.+.+.|...+..  +.+..+.     
T Consensus       179 ~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~--~v~~~~~~~~~~  255 (368)
T 1mda_H          179 YLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGA--TMKAAIDGNESG  255 (368)
T ss_dssp             ECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCC--EEECCCCSSCTH
T ss_pred             EEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcc--eEEEEEEecccc
Confidence                011111222211    00000    000000    0112223333334 7788888754321  1111110     


Q ss_pred             --cC---CcceEEEEecCCCCCCCcEEEEEe---C-----CCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCE-
Q 036510          207 --MH---TDWVRDVAWAPNLGLPKSTIASAS---E-----DGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNI-  272 (288)
Q Consensus       207 --~h---~~~V~~v~~sp~~~~~~~~l~s~s---~-----D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~-  272 (288)
                        .+   ......+.|+|++   ...+++..   .     ++.+.++|+...+.   ...+ ..+.....++|+|||++ 
T Consensus       256 ~~~~~~~p~g~~~v~~s~dg---~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v---v~~i-~vg~~p~gi~~s~Dg~~l  328 (368)
T 1mda_H          256 RKADNFRSAGFQMVAKLKNT---DGIMILTVEHSRSCLAAAENTSSVTASVGQT---SGPI-SNGHDSDAIIAAQDGASD  328 (368)
T ss_dssp             HHHTTEEECSSSCEEEETTT---TEEEEEEEECSSCTTSCEEEEEEEESSSCCE---EECC-EEEEEECEEEECCSSSCE
T ss_pred             ccccccccCcceeeEEcCCC---CEEEEEeccccCcccccCCCEEEEECCCCeE---EEEE-ECCCCcceEEECCCCCEE
Confidence              00   1111226799985   23454433   2     24566999875421   1111 11235788999999985 


Q ss_pred             EEEEe-CCCcEEEeEcC
Q 036510          273 LAVAD-GNNNVTLWEEA  288 (288)
Q Consensus       273 l~s~~-~d~~v~~w~~~  288 (288)
                      +++.. .+++|.++|.+
T Consensus       329 ~va~~~~~~~VsVID~~  345 (368)
T 1mda_H          329 NYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             EEEEETTTTEEEEEESS
T ss_pred             EEEccCCCCeEEEEECC
Confidence            55555 58999999964

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.34  E-value=0.00016  Score=62.77  Aligned_cols=233  Identities=10%  Similarity=0.027  Sum_probs=127.1

Q ss_pred             EEcCCCCEEEEeeC-----CCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEee----------CCCcEE
Q 036510           18 AMDYYGKRLATASS-----DYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCS----------FDGTVI   82 (288)
Q Consensus        18 ~~s~~g~~l~s~~~-----d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s----------~d~~v~   82 (288)
                      ...|+++.+.....     +++|.+.|..  +.+.+.++..-..+ . ++++++  |+++..+.          .++.|.
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~--t~~v~~~I~vG~~P-~-va~spD--G~~lyVan~~~~r~~~G~~~~~Vs  112 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGE--AGRVIGMIDGGFLP-N-PVVADD--GSFIAHASTVFSRIARGERTDYVE  112 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETT--TTEEEEEEEECSSC-E-EEECTT--SSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECC--CCeEEEEEECCCCC-c-EEECCC--CCEEEEEcccccccccCCCCCEEE
Confidence            35689988777765     6788888874  44667776644444 3 899875  66665443          467899


Q ss_pred             EeecCCCCceEEeEEeecC-------CCceeEEEeccCCCCeEEEEEe--CCCcEEEEeecCCCCeeeEEeeccCCCCee
Q 036510           83 IWKEGNSNEWIKDHVFEDH-------KSSVNSIDWAPHELGLCLACGS--SDGNISVFTARADGGWDTSRIDQAHPVGVT  153 (288)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h-------~~~v~~l~~~p~~~~~~l~sg~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~  153 (288)
                      +||..+...   ...+...       ...-..+.|+|++  +.+..+.  .++.|.++|+.+......  + .. +.  +
T Consensus       113 viD~~t~~v---~~~I~v~~g~r~~~g~~P~~~a~spDG--k~lyVan~~~~~~VsVID~~t~~vv~t--I-~v-~g--~  181 (386)
T 3sjl_D          113 VFDPVTLLP---TADIELPDAPRFLVGTYPWMTSLTPDG--KTLLFYQFSPAPAVGVVDLEGKAFKRM--L-DV-PD--C  181 (386)
T ss_dssp             EECTTTCCE---EEEEEETTCCCCCBSCCGGGEEECTTS--SEEEEEECSSSCEEEEEETTTTEEEEE--E-EC-CS--E
T ss_pred             EEECCCCeE---EEEEECCCccccccCCCCceEEEcCCC--CEEEEEEcCCCCeEEEEECCCCcEEEE--E-EC-CC--c
Confidence            999977552   2233211       1235678999984  4444443  378999999986532211  1 10 11  1


Q ss_pred             EEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeC-CceeeeeeeccccCCcceE-EEEec-CCCCCCCcEEEE
Q 036510          154 SVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYN-GIWKMDCFPALQMHTDWVR-DVAWA-PNLGLPKSTIAS  230 (288)
Q Consensus       154 ~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~h~~~V~-~v~~s-p~~~~~~~~l~s  230 (288)
                       .-..|.+             .+.+++.+.|+.+-+.++.. +.........+..-..++. ...|. ++     ..++-
T Consensus       182 -~~~~P~g-------------~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~d-----G~~~~  242 (386)
T 3sjl_D          182 -YHIFPTA-------------PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKA-----GRLVW  242 (386)
T ss_dssp             -EEEEEEE-------------TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTT-----TEEEE
T ss_pred             -ceeecCC-------------CceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCC-----CcEEE
Confidence             1112322             14566777788888888765 3211000000110111111 12443 33     24545


Q ss_pred             EeCCCcEEEEEeecCCCcccceEee---------cc-ccCeEEEEeecCCCEEEEEeC----------CCcEEEeEc
Q 036510          231 ASEDGKVIIWTVAREGDQWEGKVLH---------DF-KTPVYRVSWSLTGNILAVADG----------NNNVTLWEE  287 (288)
Q Consensus       231 ~s~D~~i~iw~~~~~~~~~~~~~~~---------~~-~~~i~~~~~spdg~~l~s~~~----------d~~v~~w~~  287 (288)
                      .+.+++|.+.|....... ....+.         +. ....-.++++|+++++.++..          .++|-+.|.
T Consensus       243 vs~~g~V~v~d~~~~~~~-v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~  318 (386)
T 3sjl_D          243 PTYTGKIHQIDLSSGDAK-FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA  318 (386)
T ss_dssp             EBTTSEEEEEECTTSSCE-ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred             EeCCCEEEEEECCCCcce-eecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEEC
Confidence            777899999998643210 011111         00 011224777999999888753          246777774

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.23  E-value=0.00014  Score=64.08  Aligned_cols=191  Identities=15%  Similarity=0.192  Sum_probs=106.2

Q ss_pred             CEEEEeeCCCcEEEeecCCC-CceEEeEEee------c-CCCceeEEEeccCCCCeEEEEEeCC------CcEEEEeecC
Q 036510           70 SILASCSFDGTVIIWKEGNS-NEWIKDHVFE------D-HKSSVNSIDWAPHELGLCLACGSSD------GNISVFTARA  135 (288)
Q Consensus        70 ~~l~s~s~d~~v~iwd~~~~-~~~~~~~~~~------~-h~~~v~~l~~~p~~~~~~l~sg~~d------~~i~i~d~~~  135 (288)
                      .+++++-.+++|.+.|..+. ......+++.      . ....-..+...|+  + +++++..+      +.|.++|..+
T Consensus        97 ~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pd--G-i~Vs~~g~~~g~~~g~v~vlD~~T  173 (462)
T 2ece_A           97 FLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPD--A-IYISALGNEEGEGPGGILMLDHYS  173 (462)
T ss_dssp             EEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSS--C-EEEEEEEETTSCSCCEEEEECTTT
T ss_pred             EEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCC--e-EEEEcCCCcCCCCCCeEEEEECCC
Confidence            45567888999999998633 2222334441      0 0112233455676  4 44444333      6788998876


Q ss_pred             CCCeeeEEeeccCC-CCeeEEEeCCCCCCCceecccccCCCceeEEee-------------------cCCcEEEEEEeCC
Q 036510          136 DGGWDTSRIDQAHP-VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGG-------------------CDNTVKVWKLYNG  195 (288)
Q Consensus       136 ~~~~~~~~~~~~~~-~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~-------------------~d~~i~iwd~~~~  195 (288)
                      .......... ..+ .--..+-|+|+.              +.++++.                   .+++|.+||+.++
T Consensus       174 ~~v~~~~~~~-~~~~~~~Yd~~~~p~~--------------~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~  238 (462)
T 2ece_A          174 FEPLGKWEID-RGDQYLAYDFWWNLPN--------------EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR  238 (462)
T ss_dssp             CCEEEECCSB-CTTCCCCCCEEEETTT--------------TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred             CeEEEEEccC-CCCccccceEEECCCC--------------CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC
Confidence            5322211111 111 112346667775              5666664                   4688999999875


Q ss_pred             ceeeeeeeccccC--CcceEEEEe--cCCCCCCCcEEEEEe-----CCCcEEEEEeecCCCcccc-eEe--e--------
Q 036510          196 IWKMDCFPALQMH--TDWVRDVAW--APNLGLPKSTIASAS-----EDGKVIIWTVAREGDQWEG-KVL--H--------  255 (288)
Q Consensus       196 ~~~~~~~~~~~~h--~~~V~~v~~--sp~~~~~~~~l~s~s-----~D~~i~iw~~~~~~~~~~~-~~~--~--------  255 (288)
                          +.+..+...  ...-..+.|  +|++.   ...++.-     .+++|.+|.... + .+.. ..+  .        
T Consensus       239 ----k~~~tI~vg~~g~~P~~i~f~~~Pdg~---~aYV~~e~~~~~Lss~V~v~~~d~-g-~~~~~~vIdi~~~~v~~~l  309 (462)
T 2ece_A          239 ----KRIHSLTLGEENRMALELRPLHDPTKL---MGFINMVVSLKDLSSSIWLWFYED-G-KWNAEKVIEIPAEPLEGNL  309 (462)
T ss_dssp             ----EEEEEEESCTTEEEEEEEEECSSTTCC---EEEEEEEEETTTCCEEEEEEEEET-T-EEEEEEEEEECCEECCSSC
T ss_pred             ----cEeeEEecCCCCCccceeEeeECCCCC---EEEEEEeeeccCCCceEEEEEecC-C-ceeEEEEEeCCCccccccc
Confidence                222333221  112345555  88852   3445555     677888776653 1 1111 111  0        


Q ss_pred             -----cc---ccCeEEEEeecCCCEEEEEeC-CCcEEEeEc
Q 036510          256 -----DF---KTPVYRVSWSLTGNILAVADG-NNNVTLWEE  287 (288)
Q Consensus       256 -----~~---~~~i~~~~~spdg~~l~s~~~-d~~v~~w~~  287 (288)
                           ++   .+....+.+||||++|.++.. .+.|.++|+
T Consensus       310 p~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV  350 (462)
T 2ece_A          310 PEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDI  350 (462)
T ss_dssp             CGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEEC
T ss_pred             cccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence                 00   134678999999999988864 689999985

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.22  E-value=0.00074  Score=55.49  Aligned_cols=201  Identities=6%  Similarity=0.001  Sum_probs=118.4

Q ss_pred             ceEEEEEcCCCCEEEEeeC--CCcEEEEEeCCCCceeeEEEec-cccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC
Q 036510           13 TVHDVAMDYYGKRLATASS--DYSIKIIGVGNNTSQHLAKLSG-HKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS   89 (288)
Q Consensus        13 ~v~~~~~s~~g~~l~s~~~--d~~i~lwd~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~   89 (288)
                      ...++.|+++|+++++.+.  +++|++.|...+  +.+..+.- .....-.+++.   .+.+.++.-.++.+.++|..+.
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg--~v~~~i~l~~~~fgeGi~~~---g~~lyv~t~~~~~v~viD~~t~   96 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTG--KVENIHKMDDSYFGEGLTLL---NEKLYQVVWLKNIGFIYDRRTL   96 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTC--CEEEEEECCTTCCEEEEEEE---TTEEEEEETTCSEEEEEETTTT
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCC--CEEEEEecCCCcceEEEEEe---CCEEEEEEecCCEEEEEECCCC
Confidence            4578999998876666653  578999998543  45555431 11222345654   2466677778999999998765


Q ss_pred             CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeec-cCC-CCeeEEEeCCCCCCCcee
Q 036510           90 NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQ-AHP-VGVTSVSWAPSTAPGALV  167 (288)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~-~~~-~~v~~i~~~p~~~~~~~~  167 (288)
                      .   ...+++.....-+.+  ++++ ..+++ +..+++|.++|..+........... +.+ .....+.|. ++      
T Consensus        97 ~---v~~~i~~g~~~g~gl--t~Dg-~~l~v-s~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg------  162 (266)
T 2iwa_A           97 S---NIKNFTHQMKDGWGL--ATDG-KILYG-SDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG------  162 (266)
T ss_dssp             E---EEEEEECCSSSCCEE--EECS-SSEEE-ECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT------
T ss_pred             c---EEEEEECCCCCeEEE--EECC-CEEEE-ECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC------
Confidence            4   333443211222344  4553 34444 4468899999987643222211111 111 123445544 22      


Q ss_pred             cccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecccc---------C--CcceEEEEecCCCCCCCcEEEEEeCCCc
Q 036510          168 GSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQM---------H--TDWVRDVAWAPNLGLPKSTIASASEDGK  236 (288)
Q Consensus       168 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---------h--~~~V~~v~~sp~~~~~~~~l~s~s~D~~  236 (288)
                              .+.+....++.|.+.|..++... ..+. +.+         +  ....+.++|+|+.   ...++++....+
T Consensus       163 --------~lyvn~~~~~~V~vID~~tg~V~-~~I~-~~g~~~~~~~~~~~~~~v~nGIa~~~~~---~~lfVTgk~~~~  229 (266)
T 2iwa_A          163 --------EVWANIWQTDCIARISAKDGTLL-GWIL-LPNLRKKLIDEGFRDIDVLNGIAWDQEN---KRIFVTGKLWPK  229 (266)
T ss_dssp             --------EEEEEETTSSEEEEEETTTCCEE-EEEE-CHHHHHHHHHTTCTTCCCEEEEEEETTT---TEEEEEETTCSE
T ss_pred             --------EEEEecCCCCeEEEEECCCCcEE-EEEE-CCCcccccccccccccCceEEEEEcCCC---CEEEEECCCCCe
Confidence                    44555556788999998876321 1111 111         1  1245889999985   468899988999


Q ss_pred             EEEEEeecC
Q 036510          237 VIIWTVARE  245 (288)
Q Consensus       237 i~iw~~~~~  245 (288)
                      +..-++...
T Consensus       230 v~~i~l~~~  238 (266)
T 2iwa_A          230 LFEIKLHLV  238 (266)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEecc
Confidence            999888753

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.17  E-value=0.00041  Score=61.12  Aligned_cols=231  Identities=11%  Similarity=0.027  Sum_probs=121.8

Q ss_pred             CCCCEEEEeeC-C----CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEee----------CCCcEEEee
Q 036510           21 YYGKRLATASS-D----YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCS----------FDGTVIIWK   85 (288)
Q Consensus        21 ~~g~~l~s~~~-d----~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s----------~d~~v~iwd   85 (288)
                      +++++++.... +    ++|.+.|..  +.+.+.++.--..+  .+.++++  ++.+..+.          .++.|.++|
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~--t~~vv~~I~vG~~P--gia~SpD--gk~lyVan~~~~~~~~G~~~~~VsviD  155 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGS--TGRILGMTDGGFLP--HPVAAED--GSFFAQASTVFERIARGKRTDYVEVFD  155 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETT--TTEEEEEEEECSSC--EEEECTT--SSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECC--CCEEEEEEECCCCC--ceEECCC--CCEEEEEeccccccccCCCCCEEEEEE
Confidence            46666555444 3    689998875  34666666543444  7999875  66555443          477999999


Q ss_pred             cCCCCceEEeEEeecC-------CCceeEEEeccCCCCeEEEEEe--CCCcEEEEeecCCCCeeeEEeeccCCCCeeEEE
Q 036510           86 EGNSNEWIKDHVFEDH-------KSSVNSIDWAPHELGLCLACGS--SDGNISVFTARADGGWDTSRIDQAHPVGVTSVS  156 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h-------~~~v~~l~~~p~~~~~~l~sg~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~  156 (288)
                      ..+...   ...+...       ......+.|+|+  ++.+..+.  .++.|.+.|+.+.........    +. .  ..
T Consensus       156 ~~t~~v---v~~I~v~g~~r~~~g~~P~~~~~spD--Gk~lyV~n~~~~~~VsVID~~t~kvv~~I~v----~g-~--~~  223 (426)
T 3c75_H          156 PVTFLP---IADIELPDAPRFLVGTYQWMNALTPD--NKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV----PD-C--YH  223 (426)
T ss_dssp             TTTCCE---EEEEEETTCCCCCBSCCGGGSEECTT--SSEEEEEECSSSCEEEEEETTTTEEEEEEEC----CS-E--EE
T ss_pred             CCCCcE---EEEEECCCccccccCCCcceEEEcCC--CCEEEEEecCCCCeEEEEECCCCeEEEEEEc----CC-c--ee
Confidence            877652   2223211       123457789998  44455544  268899999876532111111    00 0  11


Q ss_pred             eCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcc-eEEEEecCCCCCCCcEEEEEeCCC
Q 036510          157 WAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDW-VRDVAWAPNLGLPKSTIASASEDG  235 (288)
Q Consensus       157 ~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~-V~~v~~sp~~~~~~~~l~s~s~D~  235 (288)
                      ..|++.             ..+++.+.|+.+.+.+...+.........+.....+ ...+.|.++.    ..++..+..+
T Consensus       224 ~~p~g~-------------~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg----~~~~~~s~~g  286 (426)
T 3c75_H          224 IFPASP-------------TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRS----GRLVWPTYTG  286 (426)
T ss_dssp             EEEEET-------------TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTT----CEEEEEBTTS
T ss_pred             eccCCC-------------cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCC----CEEEEEeCCC
Confidence            122221             345556667777777763331110000111111111 1123566763    3455556778


Q ss_pred             cEEEEEeecCCCcccceEee-------cc---ccCeEEEEeecCCCEEEEEeC----------CCcEEEeEc
Q 036510          236 KVIIWTVAREGDQWEGKVLH-------DF---KTPVYRVSWSLTGNILAVADG----------NNNVTLWEE  287 (288)
Q Consensus       236 ~i~iw~~~~~~~~~~~~~~~-------~~---~~~i~~~~~spdg~~l~s~~~----------d~~v~~w~~  287 (288)
                      ++.+.|....... ......       ..   ......++|+|||+++.++..          .++|.+.|.
T Consensus       287 ~V~ViD~~~~~~~-v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~  357 (426)
T 3c75_H          287 KIFQADLTAEGAT-FRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNA  357 (426)
T ss_dssp             EEEEEEECSSCEE-ECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred             cEEEEeccCCceE-EeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEEC
Confidence            8999988542100 000000       00   011123689999998777743          357888885

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.09  E-value=0.0014  Score=53.44  Aligned_cols=193  Identities=9%  Similarity=0.038  Sum_probs=106.0

Q ss_pred             eEEEeccccCe--EEEEecCCCCCCEEEEeeCCC--cEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEe
Q 036510           48 LAKLSGHKGAV--WEVAWAHPKFGSILASCSFDG--TVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGS  123 (288)
Q Consensus        48 ~~~~~~h~~~v--~~~~~~~~~~~~~l~s~s~d~--~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~  123 (288)
                      +.++ .|....  ..|.|+ +  +.++.|.+.+|  +|+.+|+.+++.   ...+... .........+++ ..+.+..-
T Consensus        34 v~~~-phd~~~ftqGL~~~-~--~~LyestG~~g~S~v~~vD~~Tgkv---~~~~~l~-~~~FgeGit~~g-~~ly~ltw  104 (262)
T 3nol_A           34 VHSY-PHDTKAFTEGFFYR-N--GYFYESTGLNGRSSIRKVDIESGKT---LQQIELG-KRYFGEGISDWK-DKIVGLTW  104 (262)
T ss_dssp             EEEE-ECCTTCEEEEEEEE-T--TEEEEEEEETTEEEEEEECTTTCCE---EEEEECC-TTCCEEEEEEET-TEEEEEES
T ss_pred             EEEe-cCCCCcccceEEEE-C--CEEEEECCCCCCceEEEEECCCCcE---EEEEecC-CccceeEEEEeC-CEEEEEEe
Confidence            4444 455443  778886 3  67888888877  999999987763   2223222 223332222332 34455555


Q ss_pred             CCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeee
Q 036510          124 SDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFP  203 (288)
Q Consensus       124 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  203 (288)
                      .++.+.+||..+......             +...+.+       .++..+++.|+.+..++.|.++|..+.... ..+.
T Consensus       105 ~~~~v~v~D~~t~~~~~t-------------i~~~~eG-------~glt~dg~~L~~SdGs~~i~~iDp~T~~v~-~~I~  163 (262)
T 3nol_A          105 KNGLGFVWNIRNLRQVRS-------------FNYDGEG-------WGLTHNDQYLIMSDGTPVLRFLDPESLTPV-RTIT  163 (262)
T ss_dssp             SSSEEEEEETTTCCEEEE-------------EECSSCC-------CCEEECSSCEEECCSSSEEEEECTTTCSEE-EEEE
T ss_pred             eCCEEEEEECccCcEEEE-------------EECCCCc-------eEEecCCCEEEEECCCCeEEEEcCCCCeEE-EEEE
Confidence            688999999876432221             1111111       111222355665555778999987664211 1111


Q ss_pred             c-cccCC-cceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEee------------ccccCeEEEEeecC
Q 036510          204 A-LQMHT-DWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLH------------DFKTPVYRVSWSLT  269 (288)
Q Consensus       204 ~-~~~h~-~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~------------~~~~~i~~~~~spd  269 (288)
                      . ..+.. ..++.+.|. +    +...|..-.++.|.+.|+++.+..   ..+.            ......+.++|+|+
T Consensus       164 V~~~g~~~~~lNELe~~-~----G~lyan~w~~~~I~vIDp~tG~V~---~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~  235 (262)
T 3nol_A          164 VTAHGEELPELNELEWV-D----GEIFANVWQTNKIVRIDPETGKVT---GIIDLNGILAEAGPLPSPIDVLNGIAWDKE  235 (262)
T ss_dssp             CEETTEECCCEEEEEEE-T----TEEEEEETTSSEEEEECTTTCBEE---EEEECTTGGGGSCSCCSSCCCEEEEEEETT
T ss_pred             eccCCccccccceeEEE-C----CEEEEEEccCCeEEEEECCCCcEE---EEEECCcCccccccccCcCCceEEEEEcCC
Confidence            1 11111 235667776 3    345555556778888887654211   1111            11235689999999


Q ss_pred             CCEEEEEeC
Q 036510          270 GNILAVADG  278 (288)
Q Consensus       270 g~~l~s~~~  278 (288)
                      ++.|.+.+.
T Consensus       236 ~~~lfVTGK  244 (262)
T 3nol_A          236 HHRLFVTGK  244 (262)
T ss_dssp             TTEEEEEET
T ss_pred             CCEEEEECC
Confidence            988777764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.02  E-value=0.00031  Score=65.48  Aligned_cols=115  Identities=12%  Similarity=0.106  Sum_probs=68.8

Q ss_pred             EEEEcC-CCCEEEEeeCCC-----------cEEEEEeCCCCceeeEEEec-cccCeEEEEecCCCCCCEEEEee-CCCcE
Q 036510           16 DVAMDY-YGKRLATASSDY-----------SIKIIGVGNNTSQHLAKLSG-HKGAVWEVAWAHPKFGSILASCS-FDGTV   81 (288)
Q Consensus        16 ~~~~s~-~g~~l~s~~~d~-----------~i~lwd~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s-~d~~v   81 (288)
                      .+++.+ +|+.++.|+.+.           .+.+||........+..+.. +.....++++..  ++.+++.|+ .+..+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~--~g~lyv~GG~~~~~v  267 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG--NGQIVVTGGNDAKKT  267 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT--TSCEEEECSSSTTCE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC--CCCEEEeCCCCCCce
Confidence            445666 888888888653           57788876555444444432 222223455544  378888888 45689


Q ss_pred             EEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEe-CC-----CcEEEEeecCC
Q 036510           82 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGS-SD-----GNISVFTARAD  136 (288)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~-~d-----~~i~i~d~~~~  136 (288)
                      .+||..+. .|.....+...+ .-.++...++  +++++.|+ .+     +.+.+||..++
T Consensus       268 ~~yd~~t~-~W~~~~~~~~~R-~~~s~~~~~d--g~iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          268 SLYDSSSD-SWIPGPDMQVAR-GYQSSATMSD--GRVFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             EEEEGGGT-EEEECCCCSSCC-SSCEEEECTT--SCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             EEecCcCC-ceeECCCCCccc-cccceEEecC--CeEEEEeCcccCCcccccceEeCCCCC
Confidence            99998753 454433332222 1234444455  56777777 44     56888998653

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.01  E-value=0.0005  Score=64.38  Aligned_cols=49  Identities=12%  Similarity=0.409  Sum_probs=34.3

Q ss_pred             CcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          235 GKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       235 ~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      +.|..||+...+..+..    .+..++....+..+|..+++++.|+.+++||.
T Consensus       457 g~l~A~D~~tG~~~W~~----~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~  505 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSV----EHVSPWNGGTLTTAGNVVFQGTADGRLVAYHA  505 (677)
T ss_dssp             EEEEEEETTTTEEEEEE----EESSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             cEEEEEeCCCCcEEeec----CCCCCCcCcceEeCCCEEEEECCCCcEEEEEC
Confidence            67888987654322221    22344555667788889999999999999995

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.01  E-value=0.00021  Score=61.82  Aligned_cols=69  Identities=12%  Similarity=0.003  Sum_probs=48.3

Q ss_pred             EEEEcCCCCEEEEee----------CCCcEEEEEeCCCCceeeEEEecc-------ccCeEEEEecCCCCCCEEEEeeC-
Q 036510           16 DVAMDYYGKRLATAS----------SDYSIKIIGVGNNTSQHLAKLSGH-------KGAVWEVAWAHPKFGSILASCSF-   77 (288)
Q Consensus        16 ~~~~s~~g~~l~s~~----------~d~~i~lwd~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~~l~s~s~-   77 (288)
                      .+.|+|||++|..+.          .+++|.++|...  .+.+.++.-+       ...-..++++++  |+++..+.. 
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T--~~vv~~I~v~~~~~~~~g~~P~~ia~SpD--Gk~lyVan~~  144 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT--FLPIADIELPDAPRFSVGPRVHIIGNCAS--SACLLFFLFG  144 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT--CCEEEEEEETTSCSCCBSCCTTSEEECTT--SSCEEEEECS
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC--CCEEEEEECCCccccccCCCcceEEEcCC--CCEEEEEccC
Confidence            689999998888776          368899999853  3556666432       012356888875  777776654 


Q ss_pred             -CCcEEE--eecCC
Q 036510           78 -DGTVII--WKEGN   88 (288)
Q Consensus        78 -d~~v~i--wd~~~   88 (288)
                       +..+.+  +|..+
T Consensus       145 ~~~~v~V~~iD~~t  158 (368)
T 1mda_H          145 SSAAAGLSVPGASD  158 (368)
T ss_dssp             SSCEEEEEETTTEE
T ss_pred             CCCeEEEEEEchhh
Confidence             467888  88754

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.97  E-value=0.00064  Score=63.80  Aligned_cols=50  Identities=22%  Similarity=0.437  Sum_probs=34.0

Q ss_pred             CCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          234 DGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       234 D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ++.|+.||+...+..+..    .+..+...-.++..|..+.+|+.|+.|+.||.
T Consensus       454 ~g~l~A~D~~tG~~~W~~----~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~  503 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEV----PYVTIFNGGTLSTAGNLVFEGSADGRVIAYAA  503 (689)
T ss_dssp             EEEEEEEETTTTEEEEEE----EESSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             ceeEEEEECCCCCeEeEc----cCCCCccCccceECCCEEEEECCCCcEEEEEC
Confidence            477888988654322221    12234444567778889999999999999994

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.96  E-value=0.0019  Score=61.16  Aligned_cols=119  Identities=18%  Similarity=0.172  Sum_probs=65.8

Q ss_pred             cccc-ceEEEEEc-CCCCEEEEe-eCC----CcEEEEEeCCC-CceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC--
Q 036510            9 GHED-TVHDVAMD-YYGKRLATA-SSD----YSIKIIGVGNN-TSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD--   78 (288)
Q Consensus         9 ~h~~-~v~~~~~s-~~g~~l~s~-~~d----~~i~lwd~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d--   78 (288)
                      +|+- .+...+|| |||++||=+ +.+    .+|+++|++.+ .. ....+..   ....++|+++  ++.|+..+.|  
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-l~~~~~~---~~~~~~WspD--g~~l~y~~~d~~  243 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-IADKVSG---TNGEIVWGPD--HTSLFYVTKDET  243 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-CCCCEEE---ECSCCEECSS--TTEEEEEEECTT
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-CCccccC---ceeeEEEecC--CCEEEEEEECCC
Confidence            4443 67788999 999987633 222    35888898654 21 1111211   1245789865  7777766665  


Q ss_pred             ---CcEEEeecCCCCceEEeEEee-cCCCceeEEEeccCCCCeEEEEEe---CCCcEEEEeecCC
Q 036510           79 ---GTVIIWKEGNSNEWIKDHVFE-DHKSSVNSIDWAPHELGLCLACGS---SDGNISVFTARAD  136 (288)
Q Consensus        79 ---~~v~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~~l~sg~---~d~~i~i~d~~~~  136 (288)
                         ..|.++++.++... ....+. ........+.|+|++  +.|+...   ....|.++|+..+
T Consensus       244 ~~~~~v~~~~lgt~~~~-~~lv~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          244 LRENKVWRHVMGKLQSE-DVCLYEEHNPLFSAFMYKAADT--NTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             CCEEEEEEEETTSCGGG-CEEEEECCCTTCEEEEEECTTS--SEEEEEEECSSCEEEEEEESSSC
T ss_pred             CCCCEEEEEECCCCchh-cEEEEecCCCceEEEEEECCCC--CEEEEEecCCCCceEEEEECCCC
Confidence               25667777554211 111222 222345678999984  4444332   2335667777653

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.95  E-value=0.0025  Score=54.64  Aligned_cols=179  Identities=8%  Similarity=-0.008  Sum_probs=92.7

Q ss_pred             CEEEEeeCCCcEEEeecCCCCceEEeEEeecCC--Cc--eeE---EEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeE
Q 036510           70 SILASCSFDGTVIIWKEGNSNEWIKDHVFEDHK--SS--VNS---IDWAPHELGLCLACGSSDGNISVFTARADGGWDTS  142 (288)
Q Consensus        70 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~--~~--v~~---l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~  142 (288)
                      ..+..++.++.+..+|..++..   ........  ..  +..   +.-.|.-.+..+..++.++.+..+|.+++..  ..
T Consensus       189 ~~v~~g~~~g~l~~~d~~tG~~---~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~--~w  263 (376)
T 3q7m_A          189 GAAVVGGDNGRVSAVLMEQGQM---IWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQI--MW  263 (376)
T ss_dssp             TEEEECCTTTEEEEEETTTCCE---EEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCE--EE
T ss_pred             CEEEEEcCCCEEEEEECCCCcE---EEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcE--Ee
Confidence            4667778889999999877652   22222110  00  000   1011110123466677888999999876532  11


Q ss_pred             EeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccc-cCCcceEEEEecCCC
Q 036510          143 RIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQ-MHTDWVRDVAWAPNL  221 (288)
Q Consensus       143 ~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~~  221 (288)
                      ...   ......+...                ...++.++.++.+..+|..++..    ..... .....+......   
T Consensus       264 ~~~---~~~~~~~~~~----------------~~~l~~~~~~g~l~~~d~~tG~~----~w~~~~~~~~~~~~~~~~---  317 (376)
T 3q7m_A          264 KRE---LGSVNDFIVD----------------GNRIYLVDQNDRVMALTIDGGVT----LWTQSDLLHRLLTSPVLY---  317 (376)
T ss_dssp             EEC---CCCEEEEEEE----------------TTEEEEEETTCCEEEEETTTCCE----EEEECTTTTSCCCCCEEE---
T ss_pred             ecc---CCCCCCceEE----------------CCEEEEEcCCCeEEEEECCCCcE----EEeecccCCCcccCCEEE---
Confidence            111   1112222211                24567777888999999887732    11111 111111111221   


Q ss_pred             CCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          222 GLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       222 ~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                         +..|..++.++.|..+|.+..+..+..   ......+.+.-. ..+..|++++.+|.|..|+
T Consensus       318 ---~~~l~v~~~~g~l~~~d~~tG~~~~~~---~~~~~~~~~~~~-~~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          318 ---NGNLVVGDSEGYLHWINVEDGRFVAQQ---KVDSSGFQTEPV-AADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             ---TTEEEEECTTSEEEEEETTTCCEEEEE---ECCTTCBCSCCE-EETTEEEEEBTTSCEEEEE
T ss_pred             ---CCEEEEEeCCCeEEEEECCCCcEEEEE---ecCCCcceeCCE-EECCEEEEEeCCCEEEEEe
Confidence               246888999999999997654321111   111122211100 1356778889999999987

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.92  E-value=0.0011  Score=55.58  Aligned_cols=215  Identities=12%  Similarity=0.020  Sum_probs=116.2

Q ss_pred             CCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCC
Q 036510           23 GKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHK  102 (288)
Q Consensus        23 g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~  102 (288)
                      +..|..++.++.+..+|.. +  +.......+...+..+...+  ++. +..++.++.+..+|.. +..   ...+....
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g--~~~~~~~~~~~~~~~~~~~~--~g~-l~vgt~~~~l~~~d~~-g~~---~~~~~~~~  176 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-G--TEKWRFKTKKAIYATPIVSE--DGT-IYVGSNDNYLYAINPD-GTE---KWRFKTND  176 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-S--CEEEEEECSSCCCSCCEECT--TSC-EEEECTTSEEEEECTT-SCE---EEEEECSS
T ss_pred             CCEEEEEecCCEEEEEcCC-C--CEEEEEcCCCceeeeeEEcC--CCE-EEEEcCCCEEEEECCC-CCE---eEEEecCC
Confidence            3356667778888888764 2  34444444444445555432  244 5557778999999886 432   22333334


Q ss_pred             CceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEee
Q 036510          103 SSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGG  182 (288)
Q Consensus       103 ~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~  182 (288)
                      ..+.++...++  +. +..++  +.|..+| .++..  .... ......+.++...++               ..+..++
T Consensus       177 ~~~~~~~~d~~--g~-l~v~t--~~l~~~d-~~g~~--~~~~-~~~~~~~~~~~~~~~---------------g~l~v~t  232 (330)
T 3hxj_A          177 AITSAASIGKD--GT-IYFGS--DKVYAIN-PDGTE--KWNF-YAGYWTVTRPAISED---------------GTIYVTS  232 (330)
T ss_dssp             CCCSCCEECTT--CC-EEEES--SSEEEEC-TTSCE--EEEE-CCSSCCCSCCEECTT---------------SCEEEEE
T ss_pred             CceeeeEEcCC--CE-EEEEe--CEEEEEC-CCCcE--EEEE-ccCCcceeceEECCC---------------CeEEEEc
Confidence            45666666554  44 33444  7788888 43321  1111 112223444444443               2466677


Q ss_pred             cCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeE
Q 036510          183 CDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVY  262 (288)
Q Consensus       183 ~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~  262 (288)
                      .++.+..+|. ++.    .+..+......+.++...++     ..|..++.++.|..+|.+ . ..  ..........+.
T Consensus       233 ~~~gl~~~~~-~g~----~~~~~~~~~~~~~~~~~~~~-----g~l~v~t~~ggl~~~d~~-g-~~--~~~~~~~~~~~~  298 (330)
T 3hxj_A          233 LDGHLYAINP-DGT----EKWRFKTGKRIESSPVIGNT-----DTIYFGSYDGHLYAINPD-G-TE--KWNFETGSWIIA  298 (330)
T ss_dssp             TTTEEEEECT-TSC----EEEEEECSSCCCSCCEECTT-----SCEEEECTTCEEEEECTT-S-CE--EEEEECSSCCCS
T ss_pred             CCCeEEEECC-CCC----EeEEeeCCCCccccceEcCC-----CeEEEecCCCCEEEECCC-C-cE--EEEEEcCCcccc
Confidence            7777877763 321    11122222222233333333     357788888889888752 1 11  111111233456


Q ss_pred             EEEeecCCCEEEEEeCCCcEEEeE
Q 036510          263 RVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       263 ~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      ++...++|+++ .++.+|.+++..
T Consensus       299 ~~~~d~~g~l~-~gt~~G~~~~~~  321 (330)
T 3hxj_A          299 TPVIDENGTIY-FGTRNGKFYALF  321 (330)
T ss_dssp             CCEECTTCCEE-EECTTSCEEEEE
T ss_pred             ceEEcCCCEEE-EEcCCCeEEEEe
Confidence            67777888764 588899998876

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.88  E-value=0.0023  Score=52.19  Aligned_cols=189  Identities=9%  Similarity=0.068  Sum_probs=104.8

Q ss_pred             cceEEEEEcCCCCEEEEeeCCC--cEEEEEeCCCCceeeEEEeccccC-eEEEEecCCCCCCEEEEeeCCCcEEEeecCC
Q 036510           12 DTVHDVAMDYYGKRLATASSDY--SIKIIGVGNNTSQHLAKLSGHKGA-VWEVAWAHPKFGSILASCSFDGTVIIWKEGN   88 (288)
Q Consensus        12 ~~v~~~~~s~~g~~l~s~~~d~--~i~lwd~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~   88 (288)
                      ....++.|+ ++.++.|++.++  .|+.+|...  ++.+.++.-.... --.+...   .+.+.+....++.+.++|..+
T Consensus        43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~T--gkv~~~~~l~~~~FgeGit~~---g~~ly~ltw~~~~v~v~D~~t  116 (262)
T 3nol_A           43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIES--GKTLQQIELGKRYFGEGISDW---KDKIVGLTWKNGLGFVWNIRN  116 (262)
T ss_dssp             CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTT--CCEEEEEECCTTCCEEEEEEE---TTEEEEEESSSSEEEEEETTT
T ss_pred             cccceEEEE-CCEEEEECCCCCCceEEEEECCC--CcEEEEEecCCccceeEEEEe---CCEEEEEEeeCCEEEEEECcc
Confidence            345788998 678888888876  888888754  3555555432221 1235543   245666677799999999877


Q ss_pred             CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEee-ccCC-CCeeEEEeCCCCCCCce
Q 036510           89 SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRID-QAHP-VGVTSVSWAPSTAPGAL  166 (288)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~-~~~~-~~v~~i~~~p~~~~~~~  166 (288)
                      ..   ...+++- ...-+.++  +++ ..++. ...+++|.++|..+.......... .+.+ ..+..+.|. ++     
T Consensus       117 ~~---~~~ti~~-~~eG~glt--~dg-~~L~~-SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G-----  182 (262)
T 3nol_A          117 LR---QVRSFNY-DGEGWGLT--HND-QYLIM-SDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG-----  182 (262)
T ss_dssp             CC---EEEEEEC-SSCCCCEE--ECS-SCEEE-CCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT-----
T ss_pred             Cc---EEEEEEC-CCCceEEe--cCC-CEEEE-ECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC-----
Confidence            65   3344442 12224444  453 33444 344778999998765432222221 1111 123345553 22     


Q ss_pred             ecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeec--ccc-----C--CcceEEEEecCCCCCCCcEEEEEeC
Q 036510          167 VGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPA--LQM-----H--TDWVRDVAWAPNLGLPKSTIASASE  233 (288)
Q Consensus       167 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~-----h--~~~V~~v~~sp~~~~~~~~l~s~s~  233 (288)
                               .+.+..-.++.|.+.|..++.-... +..  +..     +  .+--+.++|+|+.   ..++++|-.
T Consensus       183 ---------~lyan~w~~~~I~vIDp~tG~V~~~-Id~~~L~~~~~~~~~~~~vlNGIA~dp~~---~~lfVTGK~  245 (262)
T 3nol_A          183 ---------EIFANVWQTNKIVRIDPETGKVTGI-IDLNGILAEAGPLPSPIDVLNGIAWDKEH---HRLFVTGKL  245 (262)
T ss_dssp             ---------EEEEEETTSSEEEEECTTTCBEEEE-EECTTGGGGSCSCCSSCCCEEEEEEETTT---TEEEEEETT
T ss_pred             ---------EEEEEEccCCeEEEEECCCCcEEEE-EECCcCccccccccCcCCceEEEEEcCCC---CEEEEECCC
Confidence                     4444444567788888877632111 110  110     1  1235789999975   467777743

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.88  E-value=0.0069  Score=49.31  Aligned_cols=229  Identities=12%  Similarity=0.017  Sum_probs=123.5

Q ss_pred             CEEEEeeCCCcEEEEEeCCCCcee---eEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeec
Q 036510           24 KRLATASSDYSIKIIGVGNNTSQH---LAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFED  100 (288)
Q Consensus        24 ~~l~s~~~d~~i~lwd~~~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~  100 (288)
                      ++|+-+.. +.|+.++++......   ...+........+++|.+. .+.++++-..++.|..+++.....   ...+..
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~-~~~ly~~d~~~~~I~~~~~~g~~~---~~~~~~   76 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCV-DKVVYWTDISEPSIGRASLHGGEP---TTIIRQ   76 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETT-TTEEEEEETTTTEEEEEESSSCCC---EEEECT
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecC-CCEEEEEECCCCEEEEEecCCCCc---EEEEEC
Confidence            34444443 367777775432110   1112222334678899753 356777777789999998854321   112222


Q ss_pred             CCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEE
Q 036510          101 HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCS  180 (288)
Q Consensus       101 h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s  180 (288)
                      .......++++|++ +.++++-...+.|.++++..... .  ............+.++|++.             .++++
T Consensus        77 ~~~~p~~ia~d~~~-~~lyv~d~~~~~I~~~~~~g~~~-~--~~~~~~~~~P~~i~vd~~~g-------------~lyv~  139 (267)
T 1npe_A           77 DLGSPEGIALDHLG-RTIFWTDSQLDRIEVAKMDGTQR-R--VLFDTGLVNPRGIVTDPVRG-------------NLYWT  139 (267)
T ss_dssp             TCCCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSC-E--EEECSSCSSEEEEEEETTTT-------------EEEEE
T ss_pred             CCCCccEEEEEecC-CeEEEEECCCCEEEEEEcCCCCE-E--EEEECCCCCccEEEEeeCCC-------------EEEEE
Confidence            22467889998863 45566666677898888753211 1  11111113456777887541             33444


Q ss_pred             eec--CCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccc
Q 036510          181 GGC--DNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFK  258 (288)
Q Consensus       181 ~~~--d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~  258 (288)
                      ...  .+.|..+++....  .+.+.  ......-..++++|+.   +.+.++-...+.|..+++....   ....+... 
T Consensus       140 ~~~~~~~~I~~~~~dg~~--~~~~~--~~~~~~P~gia~d~~~---~~lyv~d~~~~~I~~~~~~g~~---~~~~~~~~-  208 (267)
T 1npe_A          140 DWNRDNPKIETSHMDGTN--RRILA--QDNLGLPNGLTFDAFS---SQLCWVDAGTHRAECLNPAQPG---RRKVLEGL-  208 (267)
T ss_dssp             ECCSSSCEEEEEETTSCC--CEEEE--CTTCSCEEEEEEETTT---TEEEEEETTTTEEEEEETTEEE---EEEEEECC-
T ss_pred             ECCCCCcEEEEEecCCCC--cEEEE--ECCCCCCcEEEEcCCC---CEEEEEECCCCEEEEEecCCCc---eEEEecCC-
Confidence            332  3567666654321  11111  1112245789999964   3456666677889999875321   11222222 


Q ss_pred             cCeEEEEeecCCCEEEEEe-CCCcEEEeEc
Q 036510          259 TPVYRVSWSLTGNILAVAD-GNNNVTLWEE  287 (288)
Q Consensus       259 ~~i~~~~~spdg~~l~s~~-~d~~v~~w~~  287 (288)
                      .....++.  ++..|.++. .++.|..+|.
T Consensus       209 ~~P~gi~~--d~~~lyva~~~~~~v~~~d~  236 (267)
T 1npe_A          209 QYPFAVTS--YGKNLYYTDWKTNSVIAMDL  236 (267)
T ss_dssp             CSEEEEEE--ETTEEEEEETTTTEEEEEET
T ss_pred             CCceEEEE--eCCEEEEEECCCCeEEEEeC
Confidence            23456654  456666665 4578887773

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.85  E-value=0.0021  Score=60.31  Aligned_cols=84  Identities=15%  Similarity=0.240  Sum_probs=47.4

Q ss_pred             CCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEE
Q 036510          184 DNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYR  263 (288)
Q Consensus       184 d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~  263 (288)
                      ++.|+.||+.++.    .+..+..+.. +..-.+...    +.++..|+.|+.++.||.+..+..++..+-.+.  ...-
T Consensus       454 ~g~l~A~D~~tG~----~~W~~~~~~~-~~~g~~~ta----gglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~--~~~p  522 (689)
T 1yiq_A          454 SGKLIAWDPVKQQ----AAWEVPYVTI-FNGGTLSTA----GNLVFEGSADGRVIAYAADTGEKLWEQPAASGV--MAAP  522 (689)
T ss_dssp             EEEEEEEETTTTE----EEEEEEESSS-CCCCEEEET----TTEEEEECTTSEEEEEETTTCCEEEEEECSSCC--CSCC
T ss_pred             ceeEEEEECCCCC----eEeEccCCCC-ccCccceEC----CCEEEEECCCCcEEEEECCCCccceeeeCCCCc--ccCc
Confidence            4779999998873    3333333322 222233333    357888999999999998765333222211111  1233


Q ss_pred             EEeecCCCE-EEEEeC
Q 036510          264 VSWSLTGNI-LAVADG  278 (288)
Q Consensus       264 ~~~spdg~~-l~s~~~  278 (288)
                      +.|.+||++ +++.+.
T Consensus       523 ~ty~~~G~qyv~~~~G  538 (689)
T 1yiq_A          523 VTYSVDGEQYVTFMAG  538 (689)
T ss_dssp             EEEEETTEEEEEEEEC
T ss_pred             eEEEECCEEEEEEEec
Confidence            677899975 444433

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.84  E-value=0.002  Score=52.60  Aligned_cols=192  Identities=8%  Similarity=0.020  Sum_probs=106.5

Q ss_pred             eEEEeccccC--eEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC
Q 036510           48 LAKLSGHKGA--VWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD  125 (288)
Q Consensus        48 ~~~~~~h~~~--v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d  125 (288)
                      +.++ .|...  ...|.|+   .+.++.+.+.+|.|+++|+.+++.....  +.. ....-.+.+.  + ..+.+..-.+
T Consensus        46 v~~~-phd~~~ftqGL~~~---~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~-~~FgeGit~~--g-~~Ly~ltw~~  115 (268)
T 3nok_A           46 IREY-PHATNAFTQGLVFH---QGHFFESTGHQGTLRQLSLESAQPVWME--RLG-NIFAEGLASD--G-ERLYQLTWTE  115 (268)
T ss_dssp             EEEE-ECCTTCCEEEEEEE---TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT-TCCEEEEEEC--S-SCEEEEESSS
T ss_pred             EEEE-cCCCccccceEEEE---CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC-CcceeEEEEe--C-CEEEEEEccC
Confidence            4444 45543  3678886   2678889999999999999887643222  332 1122335443  3 3445556678


Q ss_pred             CcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecc
Q 036510          126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPAL  205 (288)
Q Consensus       126 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  205 (288)
                      +.+.+||..+....             ..+...+.+       .++..+++.|+.+..++.|.++|..+.... ..+.. 
T Consensus       116 ~~v~V~D~~Tl~~~-------------~ti~~~~eG-------wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~-~~I~V-  173 (268)
T 3nok_A          116 GLLFTWSGMPPQRE-------------RTTRYSGEG-------WGLCYWNGKLVRSDGGTMLTFHEPDGFALV-GAVQV-  173 (268)
T ss_dssp             CEEEEEETTTTEEE-------------EEEECSSCC-------CCEEEETTEEEEECSSSEEEEECTTTCCEE-EEEEC-
T ss_pred             CEEEEEECCcCcEE-------------EEEeCCCce-------eEEecCCCEEEEECCCCEEEEEcCCCCeEE-EEEEe-
Confidence            89999998764321             122221111       111122355665556888999997664211 11111 


Q ss_pred             ccCC---cceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceE-ee-----------ccccCeEEEEeecCC
Q 036510          206 QMHT---DWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKV-LH-----------DFKTPVYRVSWSLTG  270 (288)
Q Consensus       206 ~~h~---~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~-~~-----------~~~~~i~~~~~spdg  270 (288)
                      ..+.   ..++.+.|. +    +...|..-.+..|.+-|+++.+-.  ... +.           ...+..+.++|+|++
T Consensus       174 ~~~g~~v~~lNeLe~~-d----G~lyanvw~s~~I~vIDp~TG~V~--~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~  246 (268)
T 3nok_A          174 KLRGQPVELINELECA-N----GVIYANIWHSSDVLEIDPATGTVV--GVIDASALTRAVAGQVTNPEAVLNGIAVEPGS  246 (268)
T ss_dssp             EETTEECCCEEEEEEE-T----TEEEEEETTCSEEEEECTTTCBEE--EEEECHHHHHHHTTTCCCTTCCEEEEEECTTT
T ss_pred             CCCCcccccccccEEe-C----CEEEEEECCCCeEEEEeCCCCcEE--EEEECCCCcccccccccCcCCceEEEEEcCCC
Confidence            1121   235677776 3    345655556778888887654211  010 01           112467899999987


Q ss_pred             CEEEEEeC
Q 036510          271 NILAVADG  278 (288)
Q Consensus       271 ~~l~s~~~  278 (288)
                      +.|.+.+.
T Consensus       247 ~rlfVTGK  254 (268)
T 3nok_A          247 GRIFMTGK  254 (268)
T ss_dssp             CCEEEEET
T ss_pred             CEEEEeCC
Confidence            76666543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.78  E-value=0.012  Score=49.11  Aligned_cols=229  Identities=11%  Similarity=-0.003  Sum_probs=119.5

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCC--cEEEeecCCC
Q 036510           12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDG--TVIIWKEGNS   89 (288)
Q Consensus        12 ~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~--~v~iwd~~~~   89 (288)
                      ....+++++++|+++++-..++.|..+|.+..   ....+. -......+++.++  ++++++.....  .|..++..++
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~---~~~~~~-~~~~p~gia~~~d--G~l~vad~~~~~~~v~~~d~~~g  105 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN---QQIHAT-VEGKVSGLAFTSN--GDLVATGWNADSIPVVSLVKSDG  105 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC---EEEEEE-CSSEEEEEEECTT--SCEEEEEECTTSCEEEEEECTTS
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc---eEEEEe-CCCCceeEEEcCC--CcEEEEeccCCcceEEEEcCCCC
Confidence            34567899999998777767888888876432   222222 1245788998754  67666654433  3555565544


Q ss_pred             CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeec--------cCCCCeeEEEeCCCC
Q 036510           90 NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQ--------AHPVGVTSVSWAPST  161 (288)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~--------~~~~~v~~i~~~p~~  161 (288)
                      . ......+. .......+...+.  +..+++-...+.|..+|...+. ........        ..-.....|  +|++
T Consensus       106 ~-~~~~~~~~-~~~~~~g~~~~~~--~~~~v~d~~~g~i~~~d~~~~~-~~v~~~~~~~~~~~~~~~~~~pngi--s~dg  178 (306)
T 2p4o_A          106 T-VETLLTLP-DAIFLNGITPLSD--TQYLTADSYRGAIWLIDVVQPS-GSIWLEHPMLARSNSESVFPAANGL--KRFG  178 (306)
T ss_dssp             C-EEEEEECT-TCSCEEEEEESSS--SEEEEEETTTTEEEEEETTTTE-EEEEEECGGGSCSSTTCCSCSEEEE--EEET
T ss_pred             e-EEEEEeCC-CccccCcccccCC--CcEEEEECCCCeEEEEeCCCCc-EeEEEECCccccccccCCCCcCCCc--CcCC
Confidence            3 21111111 1122344443333  4445554457778777764321 01110000        000011112  2322


Q ss_pred             CCCceecccccCCCceeEEeecCCcEEEEEEeC-Cce-eeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEE
Q 036510          162 APGALVGSGFLDPVQKLCSGGCDNTVKVWKLYN-GIW-KMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVII  239 (288)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~i  239 (288)
                                   ..++++-...+.|..+|+.. +.. ..+....+    ..-..+++.+++    ++.++-...+.|.+
T Consensus       179 -------------~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~----~~P~gi~vd~dG----~l~va~~~~~~V~~  237 (306)
T 2p4o_A          179 -------------NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ----TNIDDFAFDVEG----NLYGATHIYNSVVR  237 (306)
T ss_dssp             -------------TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES----CCCSSEEEBTTC----CEEEECBTTCCEEE
T ss_pred             -------------CEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc----CCCCCeEECCCC----CEEEEeCCCCeEEE
Confidence                         13455666678899999864 211 11111111    123556777763    56666666788999


Q ss_pred             EEeecCCCcccceEeecc---ccCeEEEEee---cCCCEEEEEeCC
Q 036510          240 WTVAREGDQWEGKVLHDF---KTPVYRVSWS---LTGNILAVADGN  279 (288)
Q Consensus       240 w~~~~~~~~~~~~~~~~~---~~~i~~~~~s---pdg~~l~s~~~d  279 (288)
                      ++..  ...   ..+...   -....+++|.   ||++.|++++..
T Consensus       238 ~~~~--G~~---~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          238 IAPD--RST---TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             ECTT--CCE---EEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             ECCC--CCE---EEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence            8753  111   112111   2457899999   898887777653

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.78  E-value=0.013  Score=49.21  Aligned_cols=239  Identities=10%  Similarity=-0.003  Sum_probs=121.6

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEe-----------------ccccCeEEEEecCCCCCCEEEEe
Q 036510           13 TVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLS-----------------GHKGAVWEVAWAHPKFGSILASC   75 (288)
Q Consensus        13 ~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~-----------------~h~~~v~~~~~~~~~~~~~l~s~   75 (288)
                      ...+++++++|+++.++..++.|..|+.............                 .......++++.++ +++++++ 
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~-~g~l~v~-   97 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQ-NNQLYIV-   97 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETT-TTEEEEE-
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCC-CCcEEEE-
Confidence            3466788999987888888888888876433221111100                 01134688888642 2555554 


Q ss_pred             eCCCcEEEeecCCCCceEEeE-Eeec-CCCceeEEEecc-CCCCeEEEEEeC-----------------CCcEEEEeecC
Q 036510           76 SFDGTVIIWKEGNSNEWIKDH-VFED-HKSSVNSIDWAP-HELGLCLACGSS-----------------DGNISVFTARA  135 (288)
Q Consensus        76 s~d~~v~iwd~~~~~~~~~~~-~~~~-h~~~v~~l~~~p-~~~~~~l~sg~~-----------------d~~i~i~d~~~  135 (288)
                      ...+.+..+|...+. ..... ...+ .....+.+.+.| +  +.+.++-..                 ++.|..||...
T Consensus        98 d~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~d~~~--G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  174 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGH-ATQLATSVDGVPFKWLYAVTVDQRT--GIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST  174 (322)
T ss_dssp             ETTTEEEEECTTCEE-CEEEESEETTEECSCEEEEEECTTT--CCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred             ECCCCEEEEeCCCCE-EEEecccCCCCcccccceEEEecCC--CEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence            344557777764321 11111 1111 112457788887 6  444443321                 24566666543


Q ss_pred             CCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCc-eeEEeecCCcEEEEEEeCCce-eeeeeeccccCCcceE
Q 036510          136 DGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQ-KLCSGGCDNTVKVWKLYNGIW-KMDCFPALQMHTDWVR  213 (288)
Q Consensus       136 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~h~~~V~  213 (288)
                      +. ...  .... -.....|.|+|++              + ++++-...+.|..+|+..... ..+....+.+    -.
T Consensus       175 ~~-~~~--~~~~-~~~p~gia~~~dg--------------~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g----P~  232 (322)
T 2fp8_A          175 KE-TTL--LLKE-LHVPGGAEVSADS--------------SFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN----PG  232 (322)
T ss_dssp             TE-EEE--EEEE-ESCCCEEEECTTS--------------SEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS----EE
T ss_pred             CE-EEE--eccC-CccCcceEECCCC--------------CEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC----CC
Confidence            21 111  1111 0123457777775              4 344545668899998764210 1111112222    46


Q ss_pred             EEEecCCCCCCCcEEEEEeC----------CCcEEEEEeecCCCcccceEeecc----ccCeEEEEeecCCCEEEEEeCC
Q 036510          214 DVAWAPNLGLPKSTIASASE----------DGKVIIWTVAREGDQWEGKVLHDF----KTPVYRVSWSLTGNILAVADGN  279 (288)
Q Consensus       214 ~v~~sp~~~~~~~~l~s~s~----------D~~i~iw~~~~~~~~~~~~~~~~~----~~~i~~~~~spdg~~l~s~~~d  279 (288)
                      .+.+.+++    .+.++...          .+.|..+|..  ..  ....+...    -..+..+++ .+|+++++...+
T Consensus       233 gi~~d~~G----~l~va~~~~~~~~~~~~~~~~v~~~d~~--G~--~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~  303 (322)
T 2fp8_A          233 NIKRNADG----HFWVSSSEELDGNMHGRVDPKGIKFDEF--GN--ILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFH  303 (322)
T ss_dssp             EEEECTTS----CEEEEEEEETTSSTTSCEEEEEEEECTT--SC--EEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSC
T ss_pred             CeEECCCC----CEEEEecCcccccccCCCccEEEEECCC--CC--EEEEEECCCCCccccceEEEE-eCCEEEEeecCC
Confidence            67888864    45555443          3456666543  11  11222221    134666766 466666655567


Q ss_pred             CcEEEeEc
Q 036510          280 NNVTLWEE  287 (288)
Q Consensus       280 ~~v~~w~~  287 (288)
                      +.|..++.
T Consensus       304 ~~i~~~~~  311 (322)
T 2fp8_A          304 GSVGILVY  311 (322)
T ss_dssp             SEEEEEEC
T ss_pred             CceEEEec
Confidence            88888874

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.76  E-value=0.0016  Score=59.37  Aligned_cols=227  Identities=13%  Similarity=0.047  Sum_probs=120.0

Q ss_pred             CCCEEEEeeCC-CcEEEEEeCCCCceeeEEEec-cccCeEEEEecC-CCCCCEEEEee------------------CCCc
Q 036510           22 YGKRLATASSD-YSIKIIGVGNNTSQHLAKLSG-HKGAVWEVAWAH-PKFGSILASCS------------------FDGT   80 (288)
Q Consensus        22 ~g~~l~s~~~d-~~i~lwd~~~~~~~~~~~~~~-h~~~v~~~~~~~-~~~~~~l~s~s------------------~d~~   80 (288)
                      ||++|.....+ ..|.+-|++.  .++...+.- .......+++.. + ++.++..++                  .++.
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t--~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~  176 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDV--MKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNV  176 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTT--TEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCC--ceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCce
Confidence            78887776665 5588888753  355553321 123467788743 3 467776663                  3557


Q ss_pred             EEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEe-CC--------------CcEEEE--------------
Q 036510           81 VIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGS-SD--------------GNISVF--------------  131 (288)
Q Consensus        81 v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~-~d--------------~~i~i~--------------  131 (288)
                      +.+.|..+..   ...++.--. .-..++++|+  ++.+.+.+ ..              ..|.+.              
T Consensus       177 vtvID~~t~~---v~~qI~Vgg-~pd~~~~spd--Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~  250 (595)
T 1fwx_A          177 FTAVDADKWE---VAWQVLVSG-NLDNCDADYE--GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  250 (595)
T ss_dssp             EEEEETTTTE---EEEEEEESS-CCCCEEECSS--SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             EEEEECCCCe---EEEEEEeCC-CccceEECCC--CCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCe
Confidence            8888876532   222332111 2355667887  44444333 22              123333              


Q ss_pred             ---------eecC--CCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCce---
Q 036510          132 ---------TARA--DGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIW---  197 (288)
Q Consensus       132 ---------d~~~--~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---  197 (288)
                               |.++  +... ...+.  -......+.++|++.             ..++++..+.+|.++|+.+...   
T Consensus       251 ~~i~~V~VID~~~~~~~~~-~~~Ip--vg~~PhGv~~sPDGk-------------~v~V~~~~s~~VsVid~~~~~~~~~  314 (595)
T 1fwx_A          251 QELNGVKVVDGRKEASSLF-TRYIP--IANNPHGCNMAPDKK-------------HLCVAGKLSPTVTVLDVTRFDAVFY  314 (595)
T ss_dssp             EEETTEEEEECSGGGCCSS-EEEEE--EESSCCCEEECTTSS-------------EEEEECTTSSBEEEEEGGGHHHHHH
T ss_pred             eEECcEEEEeCcccCCcee-EEEEe--cCCCceEEEEcCCCC-------------EEEEeCCCCCeEEEEECcccccccc
Confidence                     3332  1110 00000  011234566677662             4577888899999999874310   


Q ss_pred             -ee----eeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCC-----C--cccceEeeccccCe----
Q 036510          198 -KM----DCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG-----D--QWEGKVLHDFKTPV----  261 (288)
Q Consensus       198 -~~----~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~-----~--~~~~~~~~~~~~~i----  261 (288)
                       ++    .....+.... .-+-+.|+|++    ...++.--|++|..||+....     +  ......+..+..+-    
T Consensus       315 ~~l~~~~~v~~~v~vG~-gP~h~aF~~dG----~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~  389 (595)
T 1fwx_A          315 ENADPRSAVVAEPELGL-GPLHTAFDGRG----NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKT  389 (595)
T ss_dssp             SCCCGGGGEEECCBCCS-CEEEEEECTTS----EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEE
T ss_pred             cccCcccceEEEcCCCC-CcceEEECCCC----eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccccccee
Confidence             00    0112222222 24778999974    345566679999999987520     0  00111222222221    


Q ss_pred             -EEEEeecCCCEEEEEeC
Q 036510          262 -YRVSWSLTGNILAVADG  278 (288)
Q Consensus       262 -~~~~~spdg~~l~s~~~  278 (288)
                       ..+.++|||++|+++..
T Consensus       390 ~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          390 VMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             TTTTSTTCCSSEEEEEES
T ss_pred             ccceEeCCCCCEEEEcCC
Confidence             22366899999999853

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.73  E-value=0.012  Score=47.51  Aligned_cols=194  Identities=9%  Similarity=-0.043  Sum_probs=103.8

Q ss_pred             eeEEEeccccC--eEEEEecCCCCCCEEEEeeCCC--cEEEeecCCCCceEEeEEeecCCC-ceeEEEeccCCCCeEEEE
Q 036510           47 HLAKLSGHKGA--VWEVAWAHPKFGSILASCSFDG--TVIIWKEGNSNEWIKDHVFEDHKS-SVNSIDWAPHELGLCLAC  121 (288)
Q Consensus        47 ~~~~~~~h~~~--v~~~~~~~~~~~~~l~s~s~d~--~v~iwd~~~~~~~~~~~~~~~h~~-~v~~l~~~p~~~~~~l~s  121 (288)
                      .+..+ .|...  .-.+.|+.   +.++.|.+.+|  +|+..|+.++..   ...+..... ..-.+.+..   +.+...
T Consensus        11 v~~~~-phd~~~ftqGL~~~~---~~LyestG~~g~S~v~~vD~~tgkv---~~~~~l~~~~fgeGi~~~~---~~ly~l   80 (243)
T 3mbr_X           11 VVKRY-PHDTTAFTEGLFYLR---GHLYESTGETGRSSVRKVDLETGRI---LQRAEVPPPYFGAGIVAWR---DRLIQL   80 (243)
T ss_dssp             EEEEE-ECCTTCCEEEEEEET---TEEEEEECCTTSCEEEEEETTTCCE---EEEEECCTTCCEEEEEEET---TEEEEE
T ss_pred             EEEEc-CCCCccccccEEEEC---CEEEEECCCCCCceEEEEECCCCCE---EEEEeCCCCcceeEEEEeC---CEEEEE
Confidence            34444 56543  45888863   57777878764  999999987753   222222111 123344332   455555


Q ss_pred             EeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeee
Q 036510          122 GSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDC  201 (288)
Q Consensus       122 g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  201 (288)
                      .-.++.+.+||..+........ ..++.   ..+.                .+++.|+.+..++.|.++|..+.... ..
T Consensus        81 tw~~~~v~v~D~~tl~~~~ti~-~~~~G---wglt----------------~dg~~L~vSdgs~~l~~iDp~t~~~~-~~  139 (243)
T 3mbr_X           81 TWRNHEGFVYDLATLTPRARFR-YPGEG---WALT----------------SDDSHLYMSDGTAVIRKLDPDTLQQV-GS  139 (243)
T ss_dssp             ESSSSEEEEEETTTTEEEEEEE-CSSCC---CEEE----------------ECSSCEEEECSSSEEEEECTTTCCEE-EE
T ss_pred             EeeCCEEEEEECCcCcEEEEEe-CCCCc---eEEe----------------eCCCEEEEECCCCeEEEEeCCCCeEE-EE
Confidence            6678899999987643221111 01111   1121                12244555556888999997664211 11


Q ss_pred             eeccccCC---cceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEee-----------ccccCeEEEEee
Q 036510          202 FPALQMHT---DWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLH-----------DFKTPVYRVSWS  267 (288)
Q Consensus       202 ~~~~~~h~---~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~-----------~~~~~i~~~~~s  267 (288)
                      +.. ..+.   ..++.+.|..     +...|..-.+..|.+.|+++.+.... -.+.           ...+..+.++|+
T Consensus       140 I~V-~~~g~~~~~lNeLe~~~-----G~lyanvw~s~~I~vIDp~tG~V~~~-idl~~l~~~~~~~~~~~~~vlNGIA~d  212 (243)
T 3mbr_X          140 IKV-TAGGRPLDNLNELEWVN-----GELLANVWLTSRIARIDPASGKVVAW-IDLQALVPDADALTDSTNDVLNGIAFD  212 (243)
T ss_dssp             EEC-EETTEECCCEEEEEEET-----TEEEEEETTTTEEEEECTTTCBEEEE-EECGGGSTTTTSCCCTTSSCEEEEEEE
T ss_pred             EEE-ccCCcccccceeeEEeC-----CEEEEEECCCCeEEEEECCCCCEEEE-EECCcCccccccccCCcCCceEEEEEc
Confidence            111 1111   2356677653     34555554577888888765421100 0001           112367899999


Q ss_pred             cCCCEEEEEeC
Q 036510          268 LTGNILAVADG  278 (288)
Q Consensus       268 pdg~~l~s~~~  278 (288)
                      |+++.|.+.+.
T Consensus       213 ~~~~~lfVTGK  223 (243)
T 3mbr_X          213 AEHDRLFVTGK  223 (243)
T ss_dssp             TTTTEEEEEET
T ss_pred             CCCCEEEEECC
Confidence            99887776654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.72  E-value=0.018  Score=49.31  Aligned_cols=225  Identities=12%  Similarity=0.089  Sum_probs=114.1

Q ss_pred             CCEEEEeeCCCcEEEEEeCCCCceeeEEEecc---------ccCe-EEEEecCCCCCCEEEEeeCCCcEEEeecCCCCce
Q 036510           23 GKRLATASSDYSIKIIGVGNNTSQHLAKLSGH---------KGAV-WEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEW   92 (288)
Q Consensus        23 g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h---------~~~v-~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~   92 (288)
                      +..+..++.++.+..+|...+  +.+......         ...+ ..+..    .+..+..++.++.+..+|..+++. 
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG--~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~~g~l~a~d~~tG~~-  125 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDG--KEIWSVSLAEKDGWFSKEPALLSGGVTV----SGGHVYIGSEKAQVYALNTSDGTV-  125 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTC--CEEEEEECCC---CCSCCCCCEEEEEEE----ETTEEEEEETTSEEEEEETTTCCE-
T ss_pred             CCEEEEEcCCCeEEEEEccCC--ceeeeecCccccccccccCcccccCceE----eCCEEEEEcCCCEEEEEECCCCCE-
Confidence            456777888888988887533  334333321         1222 22222    145777788999999999987753 


Q ss_pred             EEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceeccccc
Q 036510           93 IKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFL  172 (288)
Q Consensus        93 ~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~  172 (288)
                        .................    +..+..++.++.|..+|.+++...  ......  ..+..+  ....  .     ...
T Consensus       126 --~W~~~~~~~~~~~p~~~----~~~v~v~~~~g~l~~~d~~tG~~~--W~~~~~--~~~~~~--~~~~--~-----~~~  186 (376)
T 3q7m_A          126 --AWQTKVAGEALSRPVVS----DGLVLIHTSNGQLQALNEADGAVK--WTVNLD--MPSLSL--RGES--A-----PTT  186 (376)
T ss_dssp             --EEEEECSSCCCSCCEEE----TTEEEEECTTSEEEEEETTTCCEE--EEEECC--C-------CCCC--C-----CEE
T ss_pred             --EEEEeCCCceEcCCEEE----CCEEEEEcCCCeEEEEECCCCcEE--EEEeCC--CCceee--cCCC--C-----cEE
Confidence              22222221111111222    234667888999999998765421  111111  111000  0000  0     001


Q ss_pred             CCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCC-------cceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510          173 DPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHT-------DWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE  245 (288)
Q Consensus       173 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~-------~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~  245 (288)
                      . ...++.+..++.+..+|..++...    .......       ..+..+.-.|..  .+..+..++.++.+..+|.+..
T Consensus       187 ~-~~~v~~g~~~g~l~~~d~~tG~~~----w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG  259 (376)
T 3q7m_A          187 A-FGAAVVGGDNGRVSAVLMEQGQMI----WQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSG  259 (376)
T ss_dssp             E-TTEEEECCTTTEEEEEETTTCCEE----EEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTC
T ss_pred             E-CCEEEEEcCCCEEEEEECCCCcEE----EEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCC
Confidence            1 145677788889999998776321    1111000       000001111210  1246777888999999987654


Q ss_pred             CCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          246 GDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       246 ~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      +..+..    .. .....+.  .++..+.+++.++.|..+|.
T Consensus       260 ~~~w~~----~~-~~~~~~~--~~~~~l~~~~~~g~l~~~d~  294 (376)
T 3q7m_A          260 QIMWKR----EL-GSVNDFI--VDGNRIYLVDQNDRVMALTI  294 (376)
T ss_dssp             CEEEEE----CC-CCEEEEE--EETTEEEEEETTCCEEEEET
T ss_pred             cEEeec----cC-CCCCCce--EECCEEEEEcCCCeEEEEEC
Confidence            222211    11 1222222  34667777778888888773

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.69  E-value=0.0047  Score=58.50  Aligned_cols=197  Identities=14%  Similarity=0.143  Sum_probs=94.6

Q ss_pred             CeEEEEec-CCCCCCEEEEee-CC----CcEEEeecCCC-CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC----
Q 036510           57 AVWEVAWA-HPKFGSILASCS-FD----GTVIIWKEGNS-NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD----  125 (288)
Q Consensus        57 ~v~~~~~~-~~~~~~~l~s~s-~d----~~v~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d----  125 (288)
                      .+...+|| ++  |++|+-+. .+    .+|+++|+.++ ...  ...+.   .....+.|+|++  ..++....+    
T Consensus       175 ~~~~~~~S~PD--G~~lAy~~~~~G~~~~~l~v~dl~~g~~~l--~~~~~---~~~~~~~WspDg--~~l~y~~~d~~~~  245 (751)
T 2xe4_A          175 DVMEVKPAPPE--HDLVAFSVDMSGNEVYTIEFKRISDPSQTI--ADKVS---GTNGEIVWGPDH--TSLFYVTKDETLR  245 (751)
T ss_dssp             EEEEEEECTTT--TCEEEEEEESSSSSCEEEEEEETTCTTCCC--CCCEE---EECSCCEECSST--TEEEEEEECTTCC
T ss_pred             EEeeeEecCCC--CCEEEEEEeCCCCceEEEEEEECCCCCEeC--Ccccc---CceeeEEEecCC--CEEEEEEECCCCC
Confidence            57788998 65  77777433 23    35999998776 411  11111   123568899985  333333333    


Q ss_pred             -CcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeE-Eee--cCCcEEEEEEeCCceee--
Q 036510          126 -GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLC-SGG--CDNTVKVWKLYNGIWKM--  199 (288)
Q Consensus       126 -~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~-s~~--~d~~i~iwd~~~~~~~~--  199 (288)
                       ..|.++++..+..................+.|+|++              +.|+ +..  ....|.++|+.++....  
T Consensus       246 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg--------------~~l~~~~~~~~~~~l~~~d~~~~~~~~~~  311 (751)
T 2xe4_A          246 ENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADT--------------NTLCIGSQSPETAEVHLLDLRKGNAHNTL  311 (751)
T ss_dssp             EEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTS--------------SEEEEEEECSSCEEEEEEESSSCTTCCCE
T ss_pred             CCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCC--------------CEEEEEecCCCCceEEEEECCCCCCCcee
Confidence             246666665432111122112223345678899987              3443 322  23347777876542111  


Q ss_pred             eeeeccccCCcceEEEEecCCCCCCCcEEEEEeCC--CcEEEEEeecCC-Ccccce-Eeecc-ccCeEEEEeecCCCE-E
Q 036510          200 DCFPALQMHTDWVRDVAWAPNLGLPKSTIASASED--GKVIIWTVAREG-DQWEGK-VLHDF-KTPVYRVSWSLTGNI-L  273 (288)
Q Consensus       200 ~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D--~~i~iw~~~~~~-~~~~~~-~~~~~-~~~i~~~~~spdg~~-l  273 (288)
                      +.  ..........++.|+..    +.++.....+  +.-+||.+.... ..+. . ++... ...+..+.+  ++.. +
T Consensus       312 ~~--l~~~~~~~~~s~~~~~g----~~l~~~t~~~~a~~~~L~~~d~~~~~~~~-~~li~~~~~~~l~~~~~--~~~~lv  382 (751)
T 2xe4_A          312 EI--VRPREKGVRYDVQMHGT----SHLVILTNEGGAVNHKLLIAPRGQPSDWS-HVLVDHSEDVFMESIAV--RSNYLV  382 (751)
T ss_dssp             EE--SSCCCTTCCEEEEEETT----TEEEEEECTTTCTTCEEEEEETTSTTCCC-CEEECCCSSEEEEEEEE--CSSEEE
T ss_pred             EE--eecCCCCceEEEeeeeC----CEEEEEeCCCCCCCcEEEEEcCCCcccce-eeEECCCCCcEEEEEEE--ECCEEE
Confidence            11  11223344556665543    2334444444  444555443221 1111 2 22211 113444444  4544 5


Q ss_pred             EEEeCCCcEEEe
Q 036510          274 AVADGNNNVTLW  285 (288)
Q Consensus       274 ~s~~~d~~v~~w  285 (288)
                      ++...|+..+||
T Consensus       383 ~~~~~~g~~~l~  394 (751)
T 2xe4_A          383 VAGRRAGLTRIW  394 (751)
T ss_dssp             EEEEETTEEEEE
T ss_pred             EEEEeCCEEEEE
Confidence            555667765554

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.69  E-value=0.004  Score=58.30  Aligned_cols=80  Identities=10%  Similarity=0.190  Sum_probs=44.4

Q ss_pred             CcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEE
Q 036510          185 NTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRV  264 (288)
Q Consensus       185 ~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~  264 (288)
                      +.|..||+.++.    .+..+. +..++....+...    +.++..++.|+.+++||.+..+..+....  +......-+
T Consensus       457 g~l~A~D~~tG~----~~W~~~-~~~~~~~g~~~~~----g~~v~~g~~dg~l~a~D~~tG~~lw~~~~--~~~~~~~p~  525 (677)
T 1kb0_A          457 GRLLAWDPVAQK----AAWSVE-HVSPWNGGTLTTA----GNVVFQGTADGRLVAYHAATGEKLWEAPT--GTGVVAAPS  525 (677)
T ss_dssp             EEEEEEETTTTE----EEEEEE-ESSSCCCCEEEET----TTEEEEECTTSEEEEEETTTCCEEEEEEC--SSCCCSCCE
T ss_pred             cEEEEEeCCCCc----EEeecC-CCCCCcCcceEeC----CCEEEEECCCCcEEEEECCCCceeeeeeC--CCCcccCCE
Confidence            678899988773    222222 1122233334443    34677889999999999876432221111  111122346


Q ss_pred             EeecCCCEEEE
Q 036510          265 SWSLTGNILAV  275 (288)
Q Consensus       265 ~~spdg~~l~s  275 (288)
                      .|.++|+++++
T Consensus       526 ~y~~~G~~~v~  536 (677)
T 1kb0_A          526 TYMVDGRQYVS  536 (677)
T ss_dssp             EEEETTEEEEE
T ss_pred             EEEeCCEEEEE
Confidence            67899975443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.68  E-value=0.0016  Score=60.67  Aligned_cols=76  Identities=11%  Similarity=0.160  Sum_probs=45.8

Q ss_pred             eEEEEEcCCCCEEEEeeC-CCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEee-CC-----CcEEEeec
Q 036510           14 VHDVAMDYYGKRLATASS-DYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCS-FD-----GTVIIWKE   86 (288)
Q Consensus        14 v~~~~~s~~g~~l~s~~~-d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~d-----~~v~iwd~   86 (288)
                      ..++++..+|++++.|+. +..+.+||........+..+...... .+++..+  ++++++.|+ .+     ..+.+||.
T Consensus       245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~-~s~~~~~--dg~iyv~GG~~~~~~~~~~~e~yd~  321 (656)
T 1k3i_A          245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGY-QSSATMS--DGRVFTIGGSWSGGVFEKNGEVYSP  321 (656)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSS-CEEEECT--TSCEEEECCCCCSSSCCCCEEEEET
T ss_pred             cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccc-cceEEec--CCeEEEEeCcccCCcccccceEeCC
Confidence            334667789999999985 46799999754433333222211111 1233322  378888888 44     57899998


Q ss_pred             CCCCceE
Q 036510           87 GNSNEWI   93 (288)
Q Consensus        87 ~~~~~~~   93 (288)
                      .+. .|.
T Consensus       322 ~t~-~W~  327 (656)
T 1k3i_A          322 SSK-TWT  327 (656)
T ss_dssp             TTT-EEE
T ss_pred             CCC-cce
Confidence            653 453

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.65  E-value=0.016  Score=47.04  Aligned_cols=224  Identities=14%  Similarity=0.052  Sum_probs=121.1

Q ss_pred             cceEEEEEcCCCCE-EEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510           12 DTVHDVAMDYYGKR-LATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN   90 (288)
Q Consensus        12 ~~v~~~~~s~~g~~-l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~   90 (288)
                      ....++++++++.. +++-...+.|..++.++...  ...+.........+++.+. .+.++++-...+.|.++++....
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~--~~~~~~~~~~p~~ia~d~~-~~~lyv~d~~~~~I~~~~~~g~~  112 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP--TTIIRQDLGSPEGIALDHL-GRTIFWTDSQLDRIEVAKMDGTQ  112 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC--EEEECTTCCCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCS
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc--EEEEECCCCCccEEEEEec-CCeEEEEECCCCEEEEEEcCCCC
Confidence            34568889986544 45555578899888764322  1122222245688898753 35667777778899999875322


Q ss_pred             ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeC--CCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceec
Q 036510           91 EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSS--DGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG  168 (288)
Q Consensus        91 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~  168 (288)
                      .  . ............++++|++ +.++++...  .+.|..+++... ...  ......-.....+.++|++.      
T Consensus       113 ~--~-~~~~~~~~~P~~i~vd~~~-g~lyv~~~~~~~~~I~~~~~dg~-~~~--~~~~~~~~~P~gia~d~~~~------  179 (267)
T 1npe_A          113 R--R-VLFDTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIETSHMDGT-NRR--ILAQDNLGLPNGLTFDAFSS------  179 (267)
T ss_dssp             C--E-EEECSSCSSEEEEEEETTT-TEEEEEECCSSSCEEEEEETTSC-CCE--EEECTTCSCEEEEEEETTTT------
T ss_pred             E--E-EEEECCCCCccEEEEeeCC-CEEEEEECCCCCcEEEEEecCCC-CcE--EEEECCCCCCcEEEEcCCCC------
Confidence            1  1 1122222456889999864 454444433  357777766422 111  11111122456777877651      


Q ss_pred             ccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCc
Q 036510          169 SGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ  248 (288)
Q Consensus       169 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~  248 (288)
                             .+.++-...+.|..+|..... .....   .+... -..++...     +..+++-...+.|..+|....+  
T Consensus       180 -------~lyv~d~~~~~I~~~~~~g~~-~~~~~---~~~~~-P~gi~~d~-----~~lyva~~~~~~v~~~d~~~g~--  240 (267)
T 1npe_A          180 -------QLCWVDAGTHRAECLNPAQPG-RRKVL---EGLQY-PFAVTSYG-----KNLYYTDWKTNSVIAMDLAISK--  240 (267)
T ss_dssp             -------EEEEEETTTTEEEEEETTEEE-EEEEE---ECCCS-EEEEEEET-----TEEEEEETTTTEEEEEETTTTE--
T ss_pred             -------EEEEEECCCCEEEEEecCCCc-eEEEe---cCCCC-ceEEEEeC-----CEEEEEECCCCeEEEEeCCCCC--
Confidence                   445566667789888875321 11111   11111 23454432     3455555567889888865321  


Q ss_pred             ccceEeeccc-cCeEEEEeecCCC
Q 036510          249 WEGKVLHDFK-TPVYRVSWSLTGN  271 (288)
Q Consensus       249 ~~~~~~~~~~-~~i~~~~~spdg~  271 (288)
                       ....+.... .....+++.|++-
T Consensus       241 -~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          241 -EMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             -EEEEECCSSCCCCCCEEEECSCC
T ss_pred             -ceEEEccccccccceeeecCccC
Confidence             112222211 1366788888764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.65  E-value=0.017  Score=47.18  Aligned_cols=188  Identities=7%  Similarity=-0.020  Sum_probs=106.0

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCc
Q 036510           12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNE   91 (288)
Q Consensus        12 ~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~   91 (288)
                      ....++.|+ ++.++.|.+.++.|+.+|...+  +.+.++.+.....-.+...   .+.+++....++.+.++|..+.. 
T Consensus        55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tg--kv~~~~l~~~~FgeGit~~---g~~Ly~ltw~~~~v~V~D~~Tl~-  127 (268)
T 3nok_A           55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESA--QPVWMERLGNIFAEGLASD---GERLYQLTWTEGLLFTWSGMPPQ-  127 (268)
T ss_dssp             CCEEEEEEE-TTEEEEEETTTTEEEECCSSCS--SCSEEEECTTCCEEEEEEC---SSCEEEEESSSCEEEEEETTTTE-
T ss_pred             cccceEEEE-CCEEEEEcCCCCEEEEEECCCC--cEEeEECCCCcceeEEEEe---CCEEEEEEccCCEEEEEECCcCc-
Confidence            445788887 4678888999999999988544  4444441111112335653   24677777789999999987654 


Q ss_pred             eEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCC---CeeEEEeCCCCCCCceec
Q 036510           92 WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV---GVTSVSWAPSTAPGALVG  168 (288)
Q Consensus        92 ~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~---~v~~i~~~p~~~~~~~~~  168 (288)
                        ...+++. ...-+.++  +++ .. |.....+++|.++|..+.......... .++.   .+..+.|. +        
T Consensus       128 --~~~ti~~-~~eGwGLt--~Dg-~~-L~vSdGs~~l~~iDp~T~~v~~~I~V~-~~g~~v~~lNeLe~~-d--------  190 (268)
T 3nok_A          128 --RERTTRY-SGEGWGLC--YWN-GK-LVRSDGGTMLTFHEPDGFALVGAVQVK-LRGQPVELINELECA-N--------  190 (268)
T ss_dssp             --EEEEEEC-SSCCCCEE--EET-TE-EEEECSSSEEEEECTTTCCEEEEEECE-ETTEECCCEEEEEEE-T--------
T ss_pred             --EEEEEeC-CCceeEEe--cCC-CE-EEEECCCCEEEEEcCCCCeEEEEEEeC-CCCcccccccccEEe-C--------
Confidence              3344442 22335555  342 34 444445889999998765432222211 1211   23444444 2        


Q ss_pred             ccccCCCceeEEeecCCcEEEEEEeCCceeeee-eeccc------c--CCcceEEEEecCCCCCCCcEEEEEe
Q 036510          169 SGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDC-FPALQ------M--HTDWVRDVAWAPNLGLPKSTIASAS  232 (288)
Q Consensus       169 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~------~--h~~~V~~v~~sp~~~~~~~~l~s~s  232 (288)
                            +.+.+..-.++.|.+.|..++.-.... ...+.      .  -.+--+.++|+|+.   ..+++||-
T Consensus       191 ------G~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~---~rlfVTGK  254 (268)
T 3nok_A          191 ------GVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGS---GRIFMTGK  254 (268)
T ss_dssp             ------TEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTT---CCEEEEET
T ss_pred             ------CEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCC---CEEEEeCC
Confidence                  244444445678888888776321110 00010      1  11245789999975   46788774

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.57  E-value=0.0016  Score=54.53  Aligned_cols=221  Identities=14%  Similarity=0.061  Sum_probs=108.2

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCce
Q 036510           13 TVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEW   92 (288)
Q Consensus        13 ~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~   92 (288)
                      .+.++...++|++++ +..+  +..+|.+   ++.+..+..+..........    +..+..++.++.+..+|.. +.. 
T Consensus        61 ~~~~~~~~~~g~l~v-~t~~--l~~~d~~---g~~~~~~~~~~~~~~~~~~~----~~~l~v~t~~~~l~~~d~~-g~~-  128 (330)
T 3hxj_A           61 IECRPSIGKDGTIYF-GSDK--VYAINPD---GTEKWRFDTKKAIVSDFTIF----EDILYVTSMDGHLYAINTD-GTE-  128 (330)
T ss_dssp             EEECCEETTTTEECC-SSCE--EEEECCC---GGGGGGSCC-----CCEEEE----TTEEEEECTTSEEEEECTT-SCE-
T ss_pred             cccceEEecCCcEEE-ecCc--EEEECCC---CcEEEEEECCCCcccCceEE----CCEEEEEecCCEEEEEcCC-CCE-
Confidence            345556666675443 4434  6666642   22222222112112222222    3456667788999999876 432 


Q ss_pred             EEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceeccccc
Q 036510           93 IKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFL  172 (288)
Q Consensus        93 ~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~  172 (288)
                        ......+...+.++...++  +. +..|+.++.|..+|.. +..  .... ......+.++...++            
T Consensus       129 --~~~~~~~~~~~~~~~~~~~--g~-l~vgt~~~~l~~~d~~-g~~--~~~~-~~~~~~~~~~~~d~~------------  187 (330)
T 3hxj_A          129 --KWRFKTKKAIYATPIVSED--GT-IYVGSNDNYLYAINPD-GTE--KWRF-KTNDAITSAASIGKD------------  187 (330)
T ss_dssp             --EEEEECSSCCCSCCEECTT--SC-EEEECTTSEEEEECTT-SCE--EEEE-ECSSCCCSCCEECTT------------
T ss_pred             --EEEEcCCCceeeeeEEcCC--CE-EEEEcCCCEEEEECCC-CCE--eEEE-ecCCCceeeeEEcCC------------
Confidence              2233334444556655554  34 5567778889999876 321  1111 111222333333333            


Q ss_pred             CCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccce
Q 036510          173 DPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGK  252 (288)
Q Consensus       173 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~  252 (288)
                         ..+..++  +.|..+| .++.    ...........+.++...+++     .|..++.++.|..++.+. ...   .
T Consensus       188 ---g~l~v~t--~~l~~~d-~~g~----~~~~~~~~~~~~~~~~~~~~g-----~l~v~t~~~gl~~~~~~g-~~~---~  248 (330)
T 3hxj_A          188 ---GTIYFGS--DKVYAIN-PDGT----EKWNFYAGYWTVTRPAISEDG-----TIYVTSLDGHLYAINPDG-TEK---W  248 (330)
T ss_dssp             ---CCEEEES--SSEEEEC-TTSC----EEEEECCSSCCCSCCEECTTS-----CEEEEETTTEEEEECTTS-CEE---E
T ss_pred             ---CEEEEEe--CEEEEEC-CCCc----EEEEEccCCcceeceEECCCC-----eEEEEcCCCeEEEECCCC-CEe---E
Confidence               2344454  7788888 5542    112222233446666666652     466677788888876321 111   1


Q ss_pred             EeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          253 VLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       253 ~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      ........+..+...++|+ |..++.++.|..+|
T Consensus       249 ~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d  281 (330)
T 3hxj_A          249 RFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAIN  281 (330)
T ss_dssp             EEECSSCCCSCCEECTTSC-EEEECTTCEEEEEC
T ss_pred             EeeCCCCccccceEcCCCe-EEEecCCCCEEEEC
Confidence            1111112223344445554 45566777777665

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.56  E-value=0.023  Score=46.53  Aligned_cols=203  Identities=7%  Similarity=0.001  Sum_probs=111.0

Q ss_pred             eeEEEeccccC--eEEEEecCCCCCCEEEEeeC--CCcEEEeecCCCCceEEeEEeec-CCCceeEEEeccCCCCeEEEE
Q 036510           47 HLAKLSGHKGA--VWEVAWAHPKFGSILASCSF--DGTVIIWKEGNSNEWIKDHVFED-HKSSVNSIDWAPHELGLCLAC  121 (288)
Q Consensus        47 ~~~~~~~h~~~--v~~~~~~~~~~~~~l~s~s~--d~~v~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~~l~s  121 (288)
                      .+.++ .|...  ...+.|+++  +.++++.+.  +++|.+.|+.++..   ...+.. .......+.+..   +.+.++
T Consensus        11 vv~~~-p~~~~~f~~Gl~~~~d--g~Lyvstg~~~~s~v~~iD~~tg~v---~~~i~l~~~~fgeGi~~~g---~~lyv~   81 (266)
T 2iwa_A           11 VLNEF-PHDPYAFTQGLVYAEN--DTLFESTGLYGRSSVRQVALQTGKV---ENIHKMDDSYFGEGLTLLN---EKLYQV   81 (266)
T ss_dssp             EEEEE-ECCTTCCEEEEEECST--TEEEEEECSTTTCEEEEEETTTCCE---EEEEECCTTCCEEEEEEET---TEEEEE
T ss_pred             EEEEE-ECCCCCCcccEEEeCC--CeEEEECCCCCCCEEEEEECCCCCE---EEEEecCCCcceEEEEEeC---CEEEEE
Confidence            34444 34432  478999754  666666654  68999999987652   223321 112233455543   355666


Q ss_pred             EeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeee
Q 036510          122 GSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDC  201 (288)
Q Consensus       122 g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  201 (288)
                      .-.++.+.++|..+......  +.-+.+.+ ..+.  +++              +.++.+..+++|.++|..+.... ..
T Consensus        82 t~~~~~v~viD~~t~~v~~~--i~~g~~~g-~glt--~Dg--------------~~l~vs~gs~~l~viD~~t~~v~-~~  141 (266)
T 2iwa_A           82 VWLKNIGFIYDRRTLSNIKN--FTHQMKDG-WGLA--TDG--------------KILYGSDGTSILYEIDPHTFKLI-KK  141 (266)
T ss_dssp             ETTCSEEEEEETTTTEEEEE--EECCSSSC-CEEE--ECS--------------SSEEEECSSSEEEEECTTTCCEE-EE
T ss_pred             EecCCEEEEEECCCCcEEEE--EECCCCCe-EEEE--ECC--------------CEEEEECCCCeEEEEECCCCcEE-EE
Confidence            67788999999875422111  11110111 1122  222              44444556889999997664211 11


Q ss_pred             eeccccCC---cceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceE-eecc-----------ccCeEEEEe
Q 036510          202 FPALQMHT---DWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKV-LHDF-----------KTPVYRVSW  266 (288)
Q Consensus       202 ~~~~~~h~---~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~-~~~~-----------~~~i~~~~~  266 (288)
                      +. ...+.   ...+.+.|. +    +...++...++.|.+-|+...+.  .... +.+.           ....+.++|
T Consensus       142 I~-Vg~~~~p~~~~nele~~-d----g~lyvn~~~~~~V~vID~~tg~V--~~~I~~~g~~~~~~~~~~~~~~v~nGIa~  213 (266)
T 2iwa_A          142 HN-VKYNGHRVIRLNELEYI-N----GEVWANIWQTDCIARISAKDGTL--LGWILLPNLRKKLIDEGFRDIDVLNGIAW  213 (266)
T ss_dssp             EE-CEETTEECCCEEEEEEE-T----TEEEEEETTSSEEEEEETTTCCE--EEEEECHHHHHHHHHTTCTTCCCEEEEEE
T ss_pred             EE-ECCCCcccccceeEEEE-C----CEEEEecCCCCeEEEEECCCCcE--EEEEECCCcccccccccccccCceEEEEE
Confidence            11 11111   135677877 4    24556665678999999875421  1111 1111           124689999


Q ss_pred             ecCCCEEEEEe-CCCcEEEeE
Q 036510          267 SLTGNILAVAD-GNNNVTLWE  286 (288)
Q Consensus       267 spdg~~l~s~~-~d~~v~~w~  286 (288)
                      +|+++.|.+++ ..+++.+-+
T Consensus       214 ~~~~~~lfVTgk~~~~v~~i~  234 (266)
T 2iwa_A          214 DQENKRIFVTGKLWPKLFEIK  234 (266)
T ss_dssp             ETTTTEEEEEETTCSEEEEEE
T ss_pred             cCCCCEEEEECCCCCeEEEEE
Confidence            99997655554 566776655

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.50  E-value=0.026  Score=45.50  Aligned_cols=192  Identities=7%  Similarity=0.027  Sum_probs=106.3

Q ss_pred             ccc--cceEEEEEcCCCCEEEEeeCC--CcEEEEEeCCCCceeeEEEeccccC-eEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510            9 GHE--DTVHDVAMDYYGKRLATASSD--YSIKIIGVGNNTSQHLAKLSGHKGA-VWEVAWAHPKFGSILASCSFDGTVII   83 (288)
Q Consensus         9 ~h~--~~v~~~~~s~~g~~l~s~~~d--~~i~lwd~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~l~s~s~d~~v~i   83 (288)
                      .|.  ...+++.|+. +.++.|.+.+  +.|+..|...+  +.+.++.-.... --.+...   .+.++.....++.+.+
T Consensus        16 phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tg--kv~~~~~l~~~~fgeGi~~~---~~~ly~ltw~~~~v~v   89 (243)
T 3mbr_X           16 PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETG--RILQRAEVPPPYFGAGIVAW---RDRLIQLTWRNHEGFV   89 (243)
T ss_dssp             ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTC--CEEEEEECCTTCCEEEEEEE---TTEEEEEESSSSEEEE
T ss_pred             CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCC--CEEEEEeCCCCcceeEEEEe---CCEEEEEEeeCCEEEE
Confidence            454  5677899986 6777887775  48999998544  445554322221 1234443   2566777778999999


Q ss_pred             eecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCC---CCeeEEEeCCC
Q 036510           84 WKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHP---VGVTSVSWAPS  160 (288)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~---~~v~~i~~~p~  160 (288)
                      +|..+..   ...+++. ...-+.++  +++ +.+++ ...++.|.++|..+........+. .++   ..+..+.|. +
T Consensus        90 ~D~~tl~---~~~ti~~-~~~Gwglt--~dg-~~L~v-Sdgs~~l~~iDp~t~~~~~~I~V~-~~g~~~~~lNeLe~~-~  159 (243)
T 3mbr_X           90 YDLATLT---PRARFRY-PGEGWALT--SDD-SHLYM-SDGTAVIRKLDPDTLQQVGSIKVT-AGGRPLDNLNELEWV-N  159 (243)
T ss_dssp             EETTTTE---EEEEEEC-SSCCCEEE--ECS-SCEEE-ECSSSEEEEECTTTCCEEEEEECE-ETTEECCCEEEEEEE-T
T ss_pred             EECCcCc---EEEEEeC-CCCceEEe--eCC-CEEEE-ECCCCeEEEEeCCCCeEEEEEEEc-cCCcccccceeeEEe-C
Confidence            9987654   3444542 22335555  443 34444 445889999998765432222211 111   123344443 1


Q ss_pred             CCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeee-eeccc--------cCCcceEEEEecCCCCCCCcEEEEE
Q 036510          161 TAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDC-FPALQ--------MHTDWVRDVAWAPNLGLPKSTIASA  231 (288)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~--------~h~~~V~~v~~sp~~~~~~~~l~s~  231 (288)
                                    +.+.+..-.++.|.+.|..++.-.-.. ...+.        .-.+--+.++|+|+.   ..+++||
T Consensus       160 --------------G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~---~~lfVTG  222 (243)
T 3mbr_X          160 --------------GELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEH---DRLFVTG  222 (243)
T ss_dssp             --------------TEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTT---TEEEEEE
T ss_pred             --------------CEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCC---CEEEEEC
Confidence                          234444434667888888776321110 00010        011245789999974   4677777


Q ss_pred             eC
Q 036510          232 SE  233 (288)
Q Consensus       232 s~  233 (288)
                      -.
T Consensus       223 K~  224 (243)
T 3mbr_X          223 KR  224 (243)
T ss_dssp             TT
T ss_pred             CC
Confidence            53

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.43  E-value=0.034  Score=45.21  Aligned_cols=211  Identities=12%  Similarity=0.165  Sum_probs=120.7

Q ss_pred             EEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEE
Q 036510           50 KLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNIS  129 (288)
Q Consensus        50 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~  129 (288)
                      .+.+-...+.+++|.++ .+.+++....++.|...|.. +. ......+.+. ...-.|++.++  +.++++...++.+.
T Consensus        21 ~l~g~~~~lSGla~~~~-~~~L~aV~d~~~~I~~ld~~-g~-v~~~i~l~g~-~D~EGIa~~~~--g~~~vs~E~~~~l~   94 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQ-SNTLFSTINKPAAIVEMTTN-GD-LIRTIPLDFV-KDLETIEYIGD--NQFVISDERDYAIY   94 (255)
T ss_dssp             ECTTCCSCEEEEEEETT-TTEEEEEEETTEEEEEEETT-CC-EEEEEECSSC-SSEEEEEECST--TEEEEEETTTTEEE
T ss_pred             ECCCcccCcceeEEeCC-CCEEEEEECCCCeEEEEeCC-CC-EEEEEecCCC-CChHHeEEeCC--CEEEEEECCCCcEE
Confidence            34455567999999864 35566667778888888875 43 2222222222 45778888765  56666666678899


Q ss_pred             EEeecCCCCeeeEEee------ccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCce--eeee
Q 036510          130 VFTARADGGWDTSRID------QAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIW--KMDC  201 (288)
Q Consensus       130 i~d~~~~~~~~~~~~~------~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~  201 (288)
                      ++++............      ...+.....++|+|.+              +.|.++.+.....||....-..  .+..
T Consensus        95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~--------------~~L~va~E~~p~~i~~~~g~~~~~~l~i  160 (255)
T 3qqz_A           95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQD--------------HTFWFFKEKNPIEVYKVNGLLSSNELHI  160 (255)
T ss_dssp             EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTT--------------TEEEEEEESSSEEEEEEESTTCSSCCEE
T ss_pred             EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCC--------------CEEEEEECcCCceEEEEcccccCCceee
Confidence            9988665432111111      1234456788888876              4555555555666776652100  1111


Q ss_pred             eec--c--ccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEee-ccc------cCeEEEEeecCC
Q 036510          202 FPA--L--QMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLH-DFK------TPVYRVSWSLTG  270 (288)
Q Consensus       202 ~~~--~--~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~-~~~------~~i~~~~~spdg  270 (288)
                      ...  +  ..+.....++.++|..   +.+++.....+.+.++|.+..  ......+. +..      ...-.++|.|+|
T Consensus       161 ~~~~~~~~~~~~~d~S~l~~dp~t---g~lliLS~~s~~L~~~d~~g~--~~~~~~L~~g~~~l~~~~~qpEGia~d~~G  235 (255)
T 3qqz_A          161 SKDKALQRQFTLDDVSGAEFNQQK---NTLLVLSHESRALQEVTLVGE--VIGEMSLTKGSRGLSHNIKQAEGVAMDASG  235 (255)
T ss_dssp             EECHHHHHTCCSSCCCEEEEETTT---TEEEEEETTTTEEEEECTTCC--EEEEEECSTTGGGCSSCCCSEEEEEECTTC
T ss_pred             ecchhhccccccCCceeEEEcCCC---CeEEEEECCCCeEEEEcCCCC--EEEEEEcCCccCCcccccCCCCeeEECCCC
Confidence            110  1  1122246889999974   456666666778888876532  11111111 111      145789999999


Q ss_pred             CEEEEEeCCCcEEEeE
Q 036510          271 NILAVADGNNNVTLWE  286 (288)
Q Consensus       271 ~~l~s~~~d~~v~~w~  286 (288)
                      ++.++ ++.+.+..++
T Consensus       236 ~lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          236 NIYIV-SEPNRFYRFT  250 (255)
T ss_dssp             CEEEE-ETTTEEEEEE
T ss_pred             CEEEE-cCCceEEEEE
Confidence            86665 5666555443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.30  E-value=0.056  Score=44.89  Aligned_cols=209  Identities=11%  Similarity=0.054  Sum_probs=106.2

Q ss_pred             eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeC-
Q 036510           46 QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSS-  124 (288)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~-  124 (288)
                      +.+.++... ....+++|.++  ++++++-..++.|..||... . .  ...+. .......+++.|+  +.++++... 
T Consensus        23 ~~~~~~p~~-~~pegia~~~~--g~lyv~d~~~~~I~~~d~~g-~-~--~~~~~-~~~~p~gia~~~d--G~l~vad~~~   92 (306)
T 2p4o_A           23 KIITSFPVN-TFLENLASAPD--GTIFVTNHEVGEIVSITPDG-N-Q--QIHAT-VEGKVSGLAFTSN--GDLVATGWNA   92 (306)
T ss_dssp             EEEEEECTT-CCEEEEEECTT--SCEEEEETTTTEEEEECTTC-C-E--EEEEE-CSSEEEEEEECTT--SCEEEEEECT
T ss_pred             eEeEeCCCC-CCcceEEECCC--CCEEEEeCCCCeEEEECCCC-c-e--EEEEe-CCCCceeEEEcCC--CcEEEEeccC
Confidence            344455332 34577899753  77778777889999998753 2 1  11222 2346788999887  444444432 


Q ss_pred             CC-cEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeee
Q 036510          125 DG-NISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFP  203 (288)
Q Consensus       125 d~-~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  203 (288)
                      ++ .|..++...+ ........ ........+...+.              ...+++-..++.|..+|...+........
T Consensus        93 ~~~~v~~~d~~~g-~~~~~~~~-~~~~~~~g~~~~~~--------------~~~~v~d~~~g~i~~~d~~~~~~~v~~~~  156 (306)
T 2p4o_A           93 DSIPVVSLVKSDG-TVETLLTL-PDAIFLNGITPLSD--------------TQYLTADSYRGAIWLIDVVQPSGSIWLEH  156 (306)
T ss_dssp             TSCEEEEEECTTS-CEEEEEEC-TTCSCEEEEEESSS--------------SEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             CcceEEEEcCCCC-eEEEEEeC-CCccccCcccccCC--------------CcEEEEECCCCeEEEEeCCCCcEeEEEEC
Confidence            22 3555555433 22111110 01011111211111              13344544567777777543211110000


Q ss_pred             ------ccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEe
Q 036510          204 ------ALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVAD  277 (288)
Q Consensus       204 ------~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~  277 (288)
                            .....-..-+.+  +|+.   ..+.++-...+.|..+++...........+... .....+++.++|+++++..
T Consensus       157 ~~~~~~~~~~~~~~pngi--s~dg---~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~vd~dG~l~va~~  230 (306)
T 2p4o_A          157 PMLARSNSESVFPAANGL--KRFG---NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFDVEGNLYGATH  230 (306)
T ss_dssp             GGGSCSSTTCCSCSEEEE--EEET---TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEBTTCCEEEECB
T ss_pred             CccccccccCCCCcCCCc--CcCC---CEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CCCCCeEECCCCCEEEEeC
Confidence                  001111123445  6763   245667677889999998642111111222222 2345689999998776666


Q ss_pred             CCCcEEEeE
Q 036510          278 GNNNVTLWE  286 (288)
Q Consensus       278 ~d~~v~~w~  286 (288)
                      ..+.|.+++
T Consensus       231 ~~~~V~~~~  239 (306)
T 2p4o_A          231 IYNSVVRIA  239 (306)
T ss_dssp             TTCCEEEEC
T ss_pred             CCCeEEEEC
Confidence            677888876

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.27  E-value=0.084  Score=46.38  Aligned_cols=157  Identities=9%  Similarity=0.051  Sum_probs=86.0

Q ss_pred             ceEEEEEcC-CCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCC-EEEEeeCCC----cEEEeec
Q 036510           13 TVHDVAMDY-YGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGS-ILASCSFDG----TVIIWKE   86 (288)
Q Consensus        13 ~v~~~~~s~-~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s~d~----~v~iwd~   86 (288)
                      ....++++| ++..|..+...+.|+.+|.+..   .+..+.........++|+++  ++ ++++-..++    .+.+.+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~---~v~~~~~~~~~P~~ia~d~~--G~~lyvad~~~~~~~~~v~~~~~  212 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE---YVSTVYSGLSKVRTICWTHE--ADSMIITNDQNNNDRPNNYILTR  212 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT---EEEEEECCCSCEEEEEECTT--SSEEEEEECCSCTTSEEEEEEEG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC---EEEEEecCCCCcceEEEeCC--CCEEEEEeCCCCcccceEEEEeC
Confidence            346788997 3445555555477777776533   23333334455788999754  66 555544333    2333332


Q ss_pred             CCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCce
Q 036510           87 GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGAL  166 (288)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~  166 (288)
                       .+. +.....+.. ......++++|++ +.++++-...+.|..++..... ..... .......-..|.|+|++     
T Consensus       213 -~g~-~~~~~~l~~-~~~p~giavdp~~-g~lyv~d~~~~~V~~~~~~~~~-~~~~~-~~~~~~~P~gia~~pdG-----  281 (430)
T 3tc9_A          213 -ESG-FKVITELTK-GQNCNGAETHPIN-GELYFNSWNAGQVFRYDFTTQE-TTPLF-TIQDSGWEFHIQFHPSG-----  281 (430)
T ss_dssp             -GGT-SCSEEEEEE-CSSCCCEEECTTT-CCEEEEETTTTEEEEEETTTTE-EEEEE-ECSSSSCCEEEEECTTS-----
T ss_pred             -CCc-eeeeeeecc-CCCceEEEEeCCC-CEEEEEECCCCEEEEEECCCCc-EEEEE-EcCCCCcceeEEEcCCC-----
Confidence             222 111122222 2345778888843 5656665566788888875331 10111 11111235678888887     


Q ss_pred             ecccccCCCc-eeEEeecCCcEEEEEEeC
Q 036510          167 VGSGFLDPVQ-KLCSGGCDNTVKVWKLYN  194 (288)
Q Consensus       167 ~~~~~~~~~~-~l~s~~~d~~i~iwd~~~  194 (288)
                               + ++++-...+.|..++...
T Consensus       282 ---------~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          282 ---------NYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             ---------SEEEEEETTTTEEEEEEEET
T ss_pred             ---------CEEEEEECCCCEEEEEeCCc
Confidence                     4 555666677888888764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.04  E-value=0.065  Score=48.85  Aligned_cols=96  Identities=15%  Similarity=0.097  Sum_probs=56.9

Q ss_pred             CcEEEEEEeC--CceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCC------cccceEeec
Q 036510          185 NTVKVWKLYN--GIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGD------QWEGKVLHD  256 (288)
Q Consensus       185 ~~i~iwd~~~--~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~------~~~~~~~~~  256 (288)
                      +.|.+.|.++  +..   .+..+.... ...++.++||++   ..++++..+.+|.++|+.+.+.      .........
T Consensus       254 ~~V~VID~~~~~~~~---~~~~Ipvg~-~PhGv~~sPDGk---~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~  326 (595)
T 1fwx_A          254 NGVKVVDGRKEASSL---FTRYIPIAN-NPHGCNMAPDKK---HLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE  326 (595)
T ss_dssp             TTEEEEECSGGGCCS---SEEEEEEES-SCCCEEECTTSS---EEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred             CcEEEEeCcccCCce---eEEEEecCC-CceEEEEcCCCC---EEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence            4588888876  211   011111111 235689999862   3555666799999999984310      000111222


Q ss_pred             --cccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          257 --FKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       257 --~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                        .+....-++|+|||....+.-.|+.|.+|++
T Consensus       327 v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi  359 (595)
T 1fwx_A          327 PELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNI  359 (595)
T ss_dssp             CBCCSCEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred             cCCCCCcceEEECCCCeEEEEEecCCcEEEEEh
Confidence              2345778999999944445557999999985

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.02  E-value=0.036  Score=51.74  Aligned_cols=51  Identities=14%  Similarity=0.346  Sum_probs=33.6

Q ss_pred             CCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          233 EDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       233 ~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      .++.|.-||+...+..+...    ...+.....+...|.++.+++.|+.|+.||.
T Consensus       436 ~~g~l~A~D~~tG~~~W~~~----~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~  486 (668)
T 1kv9_A          436 VSGALLAWDPVKQKAAWKVP----YPTHWNGGTLSTAGNLVFQGTAAGQMHAYSA  486 (668)
T ss_dssp             CEEEEEEEETTTTEEEEEEE----ESSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             ccceEEEEeCCCCcEEEEcc----CCCCCcCceeEeCCCEEEEECCcccchhhhh
Confidence            35789999886543222221    1233444455667888888999999999984

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.01  E-value=0.12  Score=43.18  Aligned_cols=200  Identities=10%  Similarity=0.105  Sum_probs=99.0

Q ss_pred             ceEEEEEcC-CCCEEEEeeCCCcEEEEEeCCCCceeeEEE-ec-cccCeEEEEecCCCCCCEEEEeeC------------
Q 036510           13 TVHDVAMDY-YGKRLATASSDYSIKIIGVGNNTSQHLAKL-SG-HKGAVWEVAWAHPKFGSILASCSF------------   77 (288)
Q Consensus        13 ~v~~~~~s~-~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~-~~-h~~~v~~~~~~~~~~~~~l~s~s~------------   77 (288)
                      ...++++.+ +|++++ +...+.+..++......+.+... .+ .....+.+++.+. +|.+.++-..            
T Consensus        81 ~p~gi~~~~~~g~l~v-~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~-~G~l~v~d~~~~~~~~~~~~~~  158 (322)
T 2fp8_A           81 RTYDISYNLQNNQLYI-VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQR-TGIVYFTDVSTLYDDRGVQQIM  158 (322)
T ss_dssp             CEEEEEEETTTTEEEE-EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTT-TCCEEEEESCSSCCTTCHHHHH
T ss_pred             CCceEEEcCCCCcEEE-EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecC-CCEEEEECCcccccccccceeh
Confidence            467889997 676555 44445566666532211112111 11 1124677888651 3677766432            


Q ss_pred             -----CCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCC--CeeeEEeeccCCC
Q 036510           78 -----DGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADG--GWDTSRIDQAHPV  150 (288)
Q Consensus        78 -----d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~--~~~~~~~~~~~~~  150 (288)
                           ++.|..+|..++..    ..+.......+.++|+|++ ..++++-...+.|..|++....  ......  . .+.
T Consensus       159 ~~~~~~g~v~~~d~~~~~~----~~~~~~~~~p~gia~~~dg-~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~--~-~~g  230 (322)
T 2fp8_A          159 DTSDKTGRLIKYDPSTKET----TLLLKELHVPGGAEVSADS-SFVLVAEFLSHQIVKYWLEGPKKGTAEVLV--K-IPN  230 (322)
T ss_dssp             HHTCCCEEEEEEETTTTEE----EEEEEEESCCCEEEECTTS-SEEEEEEGGGTEEEEEESSSTTTTCEEEEE--E-CSS
T ss_pred             cccCCCceEEEEeCCCCEE----EEeccCCccCcceEECCCC-CEEEEEeCCCCeEEEEECCCCcCCccceEE--e-CCC
Confidence                 36677777654321    1111111245678999984 2344555666889999876421  111111  1 112


Q ss_pred             CeeEEEeCCCCCCCceecccccCCCceeEEeec----------CCcEEEEEEeCCceeeeeeeccccC-CcceEEEEecC
Q 036510          151 GVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC----------DNTVKVWKLYNGIWKMDCFPALQMH-TDWVRDVAWAP  219 (288)
Q Consensus       151 ~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~~~h-~~~V~~v~~sp  219 (288)
                       ...+..++++              ++.++...          .+.|..+|.. +. .+..+..-.+. -..+.++.+. 
T Consensus       231 -P~gi~~d~~G--------------~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~-~~~~~~~~~g~~~~~~~~~~~~-  292 (322)
T 2fp8_A          231 -PGNIKRNADG--------------HFWVSSSEELDGNMHGRVDPKGIKFDEF-GN-ILEVIPLPPPFAGEHFEQIQEH-  292 (322)
T ss_dssp             -EEEEEECTTS--------------CEEEEEEEETTSSTTSCEEEEEEEECTT-SC-EEEEEECCTTTTTSCCCEEEEE-
T ss_pred             -CCCeEECCCC--------------CEEEEecCcccccccCCCccEEEEECCC-CC-EEEEEECCCCCccccceEEEEe-
Confidence             4556666654              44443322          2445556542 21 11111111111 2235566553 


Q ss_pred             CCCCCCcEEEEEeCCCcEEEEEeec
Q 036510          220 NLGLPKSTIASASEDGKVIIWTVAR  244 (288)
Q Consensus       220 ~~~~~~~~l~s~s~D~~i~iw~~~~  244 (288)
                      +    +.+.++....+.|..+++..
T Consensus       293 ~----g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          293 D----GLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             T----TEEEEECSSCSEEEEEEC--
T ss_pred             C----CEEEEeecCCCceEEEeccc
Confidence            2    35666666778888888764

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.88  E-value=0.18  Score=43.46  Aligned_cols=219  Identities=7%  Similarity=-0.041  Sum_probs=113.8

Q ss_pred             CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEecc
Q 036510           33 YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAP  112 (288)
Q Consensus        33 ~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p  112 (288)
                      ..|+..+++....   ..+..-.....+++|.+. .+.++.+-...+.|..+++....   ....+.........+++.+
T Consensus        96 ~~I~~i~~~~~~~---~~~~~~~~~~~gl~~d~~-~~~ly~~D~~~~~I~r~~~~g~~---~~~~~~~~~~~p~glavd~  168 (386)
T 3v65_B           96 IDIRQVLPHRSEY---TLLLNNLENAIALDFHHR-RELVFWSDVTLDRILRANLNGSN---VEEVVSTGLESPGGLAVDW  168 (386)
T ss_dssp             SCEEEECTTSCCC---EEEECSCSCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCC---EEEEECSSCSCCCCEEEET
T ss_pred             ccceeeccCCCcE---EEEecCCCccEEEEEecC-CCeEEEEeCCCCcEEEEecCCCC---cEEEEeCCCCCccEEEEEe
Confidence            4566666644322   222222345788999753 36677776778889888875432   1112222223456777776


Q ss_pred             CCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecC-CcEEEEE
Q 036510          113 HELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCD-NTVKVWK  191 (288)
Q Consensus       113 ~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d-~~i~iwd  191 (288)
                      .. +.++.+-...+.|.+.++....  .. ......-.....|+.+|...             .++++-... +.|...+
T Consensus       169 ~~-g~lY~~d~~~~~I~~~~~dg~~--~~-~l~~~~l~~P~giavdp~~g-------------~ly~td~~~~~~I~r~~  231 (386)
T 3v65_B          169 VH-DKLYWTDSGTSRIEVANLDGAH--RK-VLLWQSLEKPRAIALHPMEG-------------TIYWTDWGNTPRIEASS  231 (386)
T ss_dssp             TT-TEEEEEETTTTEEEECBTTSCS--CE-EEECSSCSCEEEEEEETTTT-------------EEEEEECSSSCEEEEEE
T ss_pred             CC-CeEEEEcCCCCeEEEEeCCCCc--eE-EeecCCCCCCcEEEEEcCCC-------------eEEEeccCCCCEEEEEe
Confidence            53 4555555566777776654221  11 11122223456677777541             334444334 5666666


Q ss_pred             EeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCC
Q 036510          192 LYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGN  271 (288)
Q Consensus       192 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~  271 (288)
                      +.....  +.+  ....-..-+.++|+|+.   +.+.++=+..+.|..+++....   ....+.........+++ ..+.
T Consensus       232 ~dG~~~--~~~--~~~~~~~PnGlavd~~~---~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~~P~giav-~~~~  300 (386)
T 3v65_B          232 MDGSGR--RII--ADTHLFWPNGLTIDYAG---RRMYWVDAKHHVIERANLDGSH---RKAVISQGLPHPFAITV-FEDS  300 (386)
T ss_dssp             TTSCSC--EEE--ECSSCSCEEEEEEEGGG---TEEEEEETTTTEEEEECTTSCS---CEEEECSSCSSEEEEEE-ETTE
T ss_pred             CCCCCc--EEE--EECCCCCeeeEEEeCCC---CEEEEEECCCCEEEEEeCCCCe---eEEEEECCCCCceEEEE-ECCE
Confidence            543211  111  11122235789999864   3455666667778888764221   11222222234567777 3444


Q ss_pred             EEEEEeCCCcEEEeE
Q 036510          272 ILAVADGNNNVTLWE  286 (288)
Q Consensus       272 ~l~s~~~d~~v~~w~  286 (288)
                      .+++-...+.|..++
T Consensus       301 ly~td~~~~~V~~~~  315 (386)
T 3v65_B          301 LYWTDWHTKSINSAN  315 (386)
T ss_dssp             EEEEETTTTEEEEEE
T ss_pred             EEEeeCCCCeEEEEE
Confidence            444444556666654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.86  E-value=0.16  Score=42.59  Aligned_cols=234  Identities=10%  Similarity=0.141  Sum_probs=116.6

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCC-CCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecC-C
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGN-NTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEG-N   88 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~-~   88 (288)
                      ...+..+.|++ ++.++ ++.++.+..- .+. .+.+.+.....+...++.+.+..+  +..++.+ .++.+  |... .
T Consensus        79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~S-~DgG~tW~~~~~~~~~~~~~~~i~~~~~--~~~~~~~-~~g~v--~~S~Dg  150 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWI-VGEPPIMLHT-TDGGQSWSQIPLDPKLPGSPRLIKALGN--GSAEMIT-NVGAI--YRTKDS  150 (327)
T ss_dssp             CCEEEEEEEET-TEEEE-EEETTEEEEE-SSTTSSCEECCCCTTCSSCEEEEEEEET--TEEEEEE-TTCCE--EEESST
T ss_pred             CccEEEEEecC-CeEEE-EECCCeEEEE-CCCCCCceECccccCCCCCeEEEEEECC--CCEEEEe-CCccE--EEEcCC
Confidence            34678888875 44444 4556644332 222 223322211123345777877543  5555554 45544  3222 3


Q ss_pred             CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceec
Q 036510           89 SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG  168 (288)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~  168 (288)
                      +.+|....  ..+...+..+.+.|+  +.+++.+ ..+.+..-+-..+..|....  ......+..+.+.|++       
T Consensus       151 G~tW~~~~--~~~~~~~~~~~~~~~--~~~~~~g-~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g-------  216 (327)
T 2xbg_A          151 GKNWQALV--QEAIGVMRNLNRSPS--GEYVAVS-SRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDG-------  216 (327)
T ss_dssp             TSSEEEEE--CSCCCCEEEEEECTT--SCEEEEE-TTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTS-------
T ss_pred             CCCCEEee--cCCCcceEEEEEcCC--CcEEEEE-CCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCC-------
Confidence            45665432  234557889999886  5556555 45555332211133454432  2344567788777764       


Q ss_pred             ccccCCCceeEEeecCCcEEEEEEeCC-ceeeeeeecc-ccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCC
Q 036510          169 SGFLDPVQKLCSGGCDNTVKVWKLYNG-IWKMDCFPAL-QMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG  246 (288)
Q Consensus       169 ~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~  246 (288)
                             . ++..+.++.+.+.+...+ .+.  .+..- ..+...+.++.+.|+.    . +..++.++.| .+. ....
T Consensus       217 -------~-~~~~~~~G~~~~s~~D~G~tW~--~~~~~~~~~~~~~~~v~~~~~~----~-~~~~g~~g~i-~~S-~DgG  279 (327)
T 2xbg_A          217 -------R-LWMIVNGGKIAFSDPDNSENWG--ELLSPLRRNSVGFLDLAYRTPN----E-VWLAGGAGAL-LCS-QDGG  279 (327)
T ss_dssp             -------C-EEEEETTTEEEEEETTEEEEEC--CCBCTTSSCCSCEEEEEESSSS----C-EEEEESTTCE-EEE-SSTT
T ss_pred             -------C-EEEEeCCceEEEecCCCCCeeE--eccCCcccCCcceEEEEecCCC----E-EEEEeCCCeE-EEe-CCCC
Confidence                   3 344455676665531111 111  11100 0122347888888752    3 4444556766 332 2222


Q ss_pred             CcccceEee---ccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          247 DQWEGKVLH---DFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       247 ~~~~~~~~~---~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      ..+.  .+.   .....++++.|.++++. ++++.+|+|.-++
T Consensus       280 ~tW~--~~~~~~~~~~~~~~v~~~~~~~~-~~~G~~G~i~~~~  319 (327)
T 2xbg_A          280 QTWQ--QDVDVKKVPSNFYKILFFSPDQG-FILGQKGILLRYV  319 (327)
T ss_dssp             SSCE--ECGGGTTSSSCCCEEEEEETTEE-EEECSTTEEEEEC
T ss_pred             cccE--EcCccCCCCCCeEEEEEECCCce-EEEcCCceEEEEc
Confidence            2222  111   12345788999866664 4555788776554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.83  E-value=0.28  Score=46.35  Aligned_cols=239  Identities=17%  Similarity=0.116  Sum_probs=126.2

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEE-------eccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKL-------SGHKGAVWEVAWAHPKFGSILASCSFDGTVII   83 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i   83 (288)
                      ...|.++...++|.+.+ |..++-+..++............       .-....|.++...+  ++. |-.|+.++-+..
T Consensus       312 ~~~v~~i~~D~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~--~g~-lWigt~~~Gl~~  387 (781)
T 3v9f_A          312 NASARYIFQDSFNNIWI-GTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG--QGK-LWIGTDGGGINV  387 (781)
T ss_dssp             SSCEEEEEECSSCCEEE-EEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT--TSC-EEEEEBSSCEEE
T ss_pred             CCeEEEEEEeCCCCEEE-EecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC--CCC-EEEEeCCCcEEE
Confidence            46788888888887655 55566677777543322221100       01235688888653  354 445565566788


Q ss_pred             eecCCCCceEEeE-EeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCC
Q 036510           84 WKEGNSNEWIKDH-VFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTA  162 (288)
Q Consensus        84 wd~~~~~~~~~~~-~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~  162 (288)
                      ++..+.. +.... .-......|.++...++  +. +-.|+.++-|..++.+++ .+.......-....|.++...+++ 
T Consensus       388 ~~~~~~~-~~~~~~~~~~~~~~v~~i~~d~~--g~-lWigt~~~Gl~~~~~~~~-~~~~~~~~~~~~~~v~~i~~d~~g-  461 (781)
T 3v9f_A          388 FENGKRV-AIYNKENRELLSNSVLCSLKDSE--GN-LWFGTYLGNISYYNTRLK-KFQIIELEKNELLDVRVFYEDKNK-  461 (781)
T ss_dssp             EETTEEE-EECC-----CCCSBEEEEEECTT--SC-EEEEETTEEEEEECSSSC-EEEECCSTTTCCCCEEEEEECTTS-
T ss_pred             EECCCCe-EEEccCCCCCCCcceEEEEECCC--CC-EEEEeccCCEEEEcCCCC-cEEEeccCCCCCCeEEEEEECCCC-
Confidence            8764321 11000 00123456888876554  44 444666666888876543 111110001123457777666543 


Q ss_pred             CCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccc---cCCcceEEEEecCCCCCCCcEEEEEeCCCcEEE
Q 036510          163 PGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQ---MHTDWVRDVAWAPNLGLPKSTIASASEDGKVII  239 (288)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~i  239 (288)
                                    .|..|+. +-+.++|..++...  ......   .....|.++...+++     .|-.|+.++-+..
T Consensus       462 --------------~lwigt~-~Gl~~~~~~~~~~~--~~~~~~~~~~~~~~i~~i~~d~~g-----~lWigt~~~Gl~~  519 (781)
T 3v9f_A          462 --------------KIWIGTH-AGVFVIDLASKKVI--HHYDTSNSQLLENFVRSIAQDSEG-----RFWIGTFGGGVGI  519 (781)
T ss_dssp             --------------EEEEEET-TEEEEEESSSSSCC--EEECTTTSSCSCSCEEEEEECTTC-----CEEEEESSSCEEE
T ss_pred             --------------CEEEEEC-CceEEEeCCCCeEE--ecccCcccccccceeEEEEEcCCC-----CEEEEEcCCCEEE
Confidence                          3555555 55778887654321  111111   113568888877653     3555565444666


Q ss_pred             EEeecCCCcccceEee---cc-ccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          240 WTVAREGDQWEGKVLH---DF-KTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       240 w~~~~~~~~~~~~~~~---~~-~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      ++....  .  ...+.   +. ...|.++...++|++.++. .+|.|..||
T Consensus       520 ~~~~~~--~--~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d  565 (781)
T 3v9f_A          520 YTPDMQ--L--VRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPS  565 (781)
T ss_dssp             ECTTCC--E--EEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESC
T ss_pred             EeCCCC--e--EEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEEC
Confidence            765421  1  11111   11 2468899988999876654 456546655

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.75  E-value=0.2  Score=42.05  Aligned_cols=233  Identities=9%  Similarity=0.128  Sum_probs=117.2

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCC-CceeeEE-EeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCC
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNN-TSQHLAK-LSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN   88 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~-~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~   88 (288)
                      ...+.+|.|.+.+..++ ++.++.|. ...+++ +.+.+.. .......+..+.|.+   +..++ ++.++.|.. ....
T Consensus        35 ~~~~~~v~~~~~~~~~~-~G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~---~~~~~-~g~~g~i~~-S~Dg  107 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWL-VGVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG---NEGWI-VGEPPIMLH-TTDG  107 (327)
T ss_dssp             SSCEEEEEESSSSCEEE-EETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET---TEEEE-EEETTEEEE-ESST
T ss_pred             CCcEEEEEECCCCcEEE-EcCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC---CeEEE-EECCCeEEE-ECCC
Confidence            45688888887777777 45666542 223322 2222211 112244678888852   44444 455665433 2223


Q ss_pred             CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecC-CCCeeeEEeeccCCCCeeEEEeCCCCCCCcee
Q 036510           89 SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA-DGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV  167 (288)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~  167 (288)
                      +.+|........+...+..+.+.++  +.+++.+ .++.|  |-... +..|....  ......+..+.+.|++      
T Consensus       108 G~tW~~~~~~~~~~~~~~~i~~~~~--~~~~~~~-~~g~v--~~S~DgG~tW~~~~--~~~~~~~~~~~~~~~~------  174 (327)
T 2xbg_A          108 GQSWSQIPLDPKLPGSPRLIKALGN--GSAEMIT-NVGAI--YRTKDSGKNWQALV--QEAIGVMRNLNRSPSG------  174 (327)
T ss_dssp             TSSCEECCCCTTCSSCEEEEEEEET--TEEEEEE-TTCCE--EEESSTTSSEEEEE--CSCCCCEEEEEECTTS------
T ss_pred             CCCceECccccCCCCCeEEEEEECC--CCEEEEe-CCccE--EEEcCCCCCCEEee--cCCCcceEEEEEcCCC------
Confidence            4566543221123345677776654  4555555 45544  33332 44565432  2344567888888764      


Q ss_pred             cccccCCCceeEEeecCCcEE-EEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCC
Q 036510          168 GSGFLDPVQKLCSGGCDNTVK-VWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREG  246 (288)
Q Consensus       168 ~~~~~~~~~~l~s~~~d~~i~-iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~  246 (288)
                              .+++.+ .++.+. -+|-....+.  .+.  ......+..+.+.|+.     .+..++.++.+...+.. ..
T Consensus       175 --------~~~~~g-~~G~~~~S~d~gG~tW~--~~~--~~~~~~~~~~~~~~~g-----~~~~~~~~G~~~~s~~D-~G  235 (327)
T 2xbg_A          175 --------EYVAVS-SRGSFYSTWEPGQTAWE--PHN--RTTSRRLHNMGFTPDG-----RLWMIVNGGKIAFSDPD-NS  235 (327)
T ss_dssp             --------CEEEEE-TTSSEEEEECTTCSSCE--EEE--CCSSSCEEEEEECTTS-----CEEEEETTTEEEEEETT-EE
T ss_pred             --------cEEEEE-CCCcEEEEeCCCCCcee--ECC--CCCCCccceeEECCCC-----CEEEEeCCceEEEecCC-CC
Confidence                    344444 344332 2221011121  111  1234457888888863     35566677877765311 01


Q ss_pred             CcccceEee--ccccCeEEEEeecCCCEEEEEeCCCcEE
Q 036510          247 DQWEGKVLH--DFKTPVYRVSWSLTGNILAVADGNNNVT  283 (288)
Q Consensus       247 ~~~~~~~~~--~~~~~i~~~~~spdg~~l~s~~~d~~v~  283 (288)
                      ..+.....-  .....+..+.|.|+++.++++ .++.|.
T Consensus       236 ~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i~  273 (327)
T 2xbg_A          236 ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGALL  273 (327)
T ss_dssp             EEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCEE
T ss_pred             CeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeEE
Confidence            111111000  011347889999988887766 466663

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.70  E-value=0.43  Score=45.19  Aligned_cols=238  Identities=8%  Similarity=0.016  Sum_probs=130.7

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEe----ccccCeEEEEecCCCCCCEEEEeeCCCcEEEeec
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLS----GHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE   86 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~   86 (288)
                      ...|.++..+++|++.+ |..++-+..++.............    -....|.++...+  +|. |-.|+.++-+..|+.
T Consensus       309 ~~~i~~i~~D~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~--~g~-lWiGt~~~Gl~~~~~  384 (795)
T 4a2l_A          309 QRSVRSIFMDSQGGMWL-GTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK--DKN-LWIGTNDGGLNLYNP  384 (795)
T ss_dssp             SSCEEEEEECTTSCEEE-EESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT--TSC-EEEEESSSCEEEECT
T ss_pred             CCcEEEEEEeCCcCEEE-EECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC--CCC-EEEEECCCCeEEEcC
Confidence            45788998898897655 666667777765322211111100    0234588888754  354 445677777888887


Q ss_pred             CCCCceEEeEEe------ecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEee--ccCCCCeeEEEeC
Q 036510           87 GNSNEWIKDHVF------EDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRID--QAHPVGVTSVSWA  158 (288)
Q Consensus        87 ~~~~~~~~~~~~------~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~v~~i~~~  158 (288)
                      .++. +.....-      ......|.++...++  +.++-.|+.++-|..|+.+.+. +......  .-....|.++...
T Consensus       385 ~~~~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~--g~~lWigt~~~Gl~~~d~~~~~-~~~~~~~~~~l~~~~v~~i~~d  460 (795)
T 4a2l_A          385 ITQR-FTSYTLQEDESARGIGSNNIKAVYVDEK--KSLVYIGTHAGGLSILHRNSGQ-VENFNQRNSQLVNENVYAILPD  460 (795)
T ss_dssp             TTCC-EEEECCC------CCSCSCEEEEEEETT--TTEEEEEETTTEEEEEETTTCC-EEEECTTTSCCSCSCEEEEEEC
T ss_pred             CCCc-EEEEecCCCCcccCCCCccEEEEEEcCC--CCEEEEEeCcCceeEEeCCCCc-EEEeecCCCCcCCCeeEEEEEC
Confidence            5432 2111100      012356888876655  4435567777778899876542 2211100  0123457777766


Q ss_pred             CCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecc----ccCCcceEEEEecCCCCCCCcEEEEEeCC
Q 036510          159 PSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPAL----QMHTDWVRDVAWAPNLGLPKSTIASASED  234 (288)
Q Consensus       159 p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----~~h~~~V~~v~~sp~~~~~~~~l~s~s~D  234 (288)
                      +++               .|..|+. +-+.+||..++...  .....    ......|.++...+++    . |-.|+. 
T Consensus       461 ~~g---------------~lwigt~-~Gl~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~i~~d~~g----~-lWigt~-  516 (795)
T 4a2l_A          461 GEG---------------NLWLGTL-SALVRFNPEQRSFT--TIEKEKDGTPVVSKQITTLFRDSHK----R-LWIGGE-  516 (795)
T ss_dssp             SSS---------------CEEEEES-SCEEEEETTTTEEE--ECCBCTTCCBCCCCCEEEEEECTTC----C-EEEEES-
T ss_pred             CCC---------------CEEEEec-CceeEEeCCCCeEE--EccccccccccCCceEEEEEECCCC----C-EEEEeC-
Confidence            554               3455555 45778886654321  11111    1123568888877653    3 444444 


Q ss_pred             CcEEEEEeecCCCcccceEe-----ec-cccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          235 GKVIIWTVAREGDQWEGKVL-----HD-FKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       235 ~~i~iw~~~~~~~~~~~~~~-----~~-~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      +.|..|+.....  .  ...     .. ....|.++...++|++.+... . -+..||
T Consensus       517 ~Gl~~~~~~~~~--~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d  568 (795)
T 4a2l_A          517 EGLSVFKQEGLD--I--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFN  568 (795)
T ss_dssp             SCEEEEEEETTE--E--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEE
T ss_pred             CceEEEeCCCCe--E--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeEC
Confidence            568888876421  1  110     01 134688999999999766543 3 455555

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.67  E-value=0.25  Score=41.98  Aligned_cols=236  Identities=7%  Similarity=-0.052  Sum_probs=121.7

Q ss_pred             eEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceE
Q 036510           14 VHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWI   93 (288)
Q Consensus        14 v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~   93 (288)
                      ..+....+++.++++-  ...|+..++++..   ...+........+++|.+. .+.++.+-...+.|..+++.....  
T Consensus        36 ~~C~~~~~~~~ll~~~--~~~I~~i~~~g~~---~~~~~~~~~~~~~l~~d~~-~~~ly~~D~~~~~I~r~~~~g~~~--  107 (349)
T 3v64_C           36 RSCKALGPEPVLLFAN--RIDIRQVLPHRSE---YTLLLNNLENAIALDFHHR-RELVFWSDVTLDRILRANLNGSNV--  107 (349)
T ss_dssp             SCEEESSSCCEEEEEC--BSCEEEECTTSCC---EEEEECSCSCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSC--
T ss_pred             CcccccccCceeEeec--ccceEEEeCCCCe---eEEeecCCCceEEEEEecc-ccEEEEEeccCCceEEEecCCCCc--
Confidence            3444444444333332  3346655654332   2222222344688999753 356667766788898888754331  


Q ss_pred             EeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccC
Q 036510           94 KDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLD  173 (288)
Q Consensus        94 ~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~  173 (288)
                       ...+.........+++.+.. +.++.+-...+.|.+.++.....  . ......-.....|+++|...           
T Consensus       108 -~~~~~~~~~~p~glavd~~~-g~ly~~d~~~~~I~~~~~dG~~~--~-~l~~~~l~~P~~iavdp~~g-----------  171 (349)
T 3v64_C          108 -EEVVSTGLESPGGLAVDWVH-DKLYWTDSGTSRIEVANLDGAHR--K-VLLWQSLEKPRAIALHPMEG-----------  171 (349)
T ss_dssp             -EEEECSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSCSC--E-EEECTTCSCEEEEEEETTTT-----------
T ss_pred             -eEEEeCCCCCccEEEEecCC-CeEEEEcCCCCeEEEEcCCCCce--E-EEEeCCCCCcceEEEecCcC-----------
Confidence             11122222345678887653 45556666667888887653211  1 11222223456777777541           


Q ss_pred             CCceeEEeecC-CcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccce
Q 036510          174 PVQKLCSGGCD-NTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGK  252 (288)
Q Consensus       174 ~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~  252 (288)
                        .++++-... +.|...++.....  +.+  ....-..-+.++++|+.   +.+.++=+..+.|..+++.-..   ...
T Consensus       172 --~ly~td~~~~~~I~r~~~dG~~~--~~~--~~~~~~~PnGla~d~~~---~~lY~aD~~~~~I~~~~~dG~~---~~~  239 (349)
T 3v64_C          172 --TIYWTDWGNTPRIEASSMDGSGR--RII--ADTHLFWPNGLTIDYAG---RRMYWVDAKHHVIERANLDGSH---RKA  239 (349)
T ss_dssp             --EEEEEECSSSCEEEEEETTSCSC--EES--CCSSCSCEEEEEEETTT---TEEEEEETTTTEEEEEETTSCS---CEE
T ss_pred             --eEEEeccCCCCEEEEEeCCCCCc--EEE--EECCCCCcceEEEeCCC---CEEEEEECCCCEEEEEeCCCCc---eEE
Confidence              344454444 6676666543211  111  11122335789999864   3456666667788888865321   112


Q ss_pred             EeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          253 VLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       253 ~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      .+.........+++ ..+..+++-...+.|...+
T Consensus       240 ~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~  272 (349)
T 3v64_C          240 VISQGLPHPFAITV-FEDSLYWTDWHTKSINSAN  272 (349)
T ss_dssp             EECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred             EEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEE
Confidence            22222234567777 3444444443456665554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.67  E-value=0.46  Score=45.03  Aligned_cols=226  Identities=13%  Similarity=0.069  Sum_probs=125.8

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEE------eccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKL------SGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW   84 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~------~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw   84 (288)
                      ...|.++...++|++.+ |..++-+..|+...........-      .-....|.++...+  ++.+|-.|+.++-+..+
T Consensus       356 ~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~--~g~~lWigt~~~Gl~~~  432 (795)
T 4a2l_A          356 DNVVSCIVEDKDKNLWI-GTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE--KKSLVYIGTHAGGLSIL  432 (795)
T ss_dssp             CSSEEEEEECTTSCEEE-EESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET--TTTEEEEEETTTEEEEE
T ss_pred             CCeeEEEEECCCCCEEE-EECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC--CCCEEEEEeCcCceeEE
Confidence            45688888888887665 66666677887643322111100      01235688888754  36636666777778899


Q ss_pred             ecCCCCceEEeEEee-----cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEee----ccCCCCeeEE
Q 036510           85 KEGNSNEWIKDHVFE-----DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRID----QAHPVGVTSV  155 (288)
Q Consensus        85 d~~~~~~~~~~~~~~-----~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~----~~~~~~v~~i  155 (288)
                      +..++. .   ..+.     .....|.++...++  +.+.+ |+. +-|..|+..++ .+......    .-....|.++
T Consensus       433 d~~~~~-~---~~~~~~~~~l~~~~v~~i~~d~~--g~lwi-gt~-~Gl~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~i  503 (795)
T 4a2l_A          433 HRNSGQ-V---ENFNQRNSQLVNENVYAILPDGE--GNLWL-GTL-SALVRFNPEQR-SFTTIEKEKDGTPVVSKQITTL  503 (795)
T ss_dssp             ETTTCC-E---EEECTTTSCCSCSCEEEEEECSS--SCEEE-EES-SCEEEEETTTT-EEEECCBCTTCCBCCCCCEEEE
T ss_pred             eCCCCc-E---EEeecCCCCcCCCeeEEEEECCC--CCEEE-Eec-CceeEEeCCCC-eEEEccccccccccCCceEEEE
Confidence            876543 1   1121     12456888876654  45443 444 45888886543 22111110    0122457777


Q ss_pred             EeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeee---eccccCCcceEEEEecCCCCCCCcEEEEEe
Q 036510          156 SWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCF---PALQMHTDWVRDVAWAPNLGLPKSTIASAS  232 (288)
Q Consensus       156 ~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s  232 (288)
                      ...+++               .+..|+. +-+..||..++..  ...   ..-......|.++...+++    . |-.|+
T Consensus       504 ~~d~~g---------------~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g----~-lWigT  560 (795)
T 4a2l_A          504 FRDSHK---------------RLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNG----I-IWVGT  560 (795)
T ss_dssp             EECTTC---------------CEEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTS----C-EEEEE
T ss_pred             EECCCC---------------CEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCC----C-EEEEe
Confidence            766654               3455555 4588889876532  111   0111234568898877753    3 44444


Q ss_pred             CCCcEEEEEeecCCCcccceEee---cc-ccCeEEEEeecCCCEEEEE
Q 036510          233 EDGKVIIWTVAREGDQWEGKVLH---DF-KTPVYRVSWSLTGNILAVA  276 (288)
Q Consensus       233 ~D~~i~iw~~~~~~~~~~~~~~~---~~-~~~i~~~~~spdg~~l~s~  276 (288)
                      .. -|..||....  .  ...+.   +. ...|.++...++|++.+++
T Consensus       561 ~~-Gl~~~d~~~~--~--~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t  603 (795)
T 4a2l_A          561 RE-GFYCFNEKDK--Q--IKRYNTTNGLPNNVVYGILEDSFGRLWLST  603 (795)
T ss_dssp             SS-CEEEEETTTT--E--EEEECGGGTCSCSCEEEEEECTTSCEEEEE
T ss_pred             CC-CceeECCCCC--c--EEEeCCCCCCchhheEEEEECCCCCEEEEc
Confidence            44 5777876432  1  11111   12 2468889988999887665

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.55  E-value=0.36  Score=42.36  Aligned_cols=243  Identities=7%  Similarity=0.006  Sum_probs=121.0

Q ss_pred             ceEEEEEcCC---CCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC---Cc-EEEee
Q 036510           13 TVHDVAMDYY---GKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD---GT-VIIWK   85 (288)
Q Consensus        13 ~v~~~~~s~~---g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---~~-v~iwd   85 (288)
                      ....++++|+   |+++++ ...+.|+.++....  . +..+.+.......++++++  ++++++-...   .. +...+
T Consensus       140 ~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g--~-v~~~~~~~~~P~giavd~d--G~lyVad~~~~~~~~gv~~~~  213 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQ--Y-VDIKTTNIGQCADVNFTLN--GDMVVVDDQSSDTNTGIYLFT  213 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEE-CBTSCEEEEETTTT--E-EEEECCCCSCEEEEEECTT--CCEEEEECCSCTTSEEEEEEC
T ss_pred             CCceEEEccccCCCEEEEE-eCCCCEEEEECCCC--E-EEEeecCCCCccEEEECCC--CCEEEEcCCCCcccceEEEEE
Confidence            3467889984   555544 43378888876432  2 3333334455789999764  6666655422   22 22222


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      .. .. +.....+.. ......++++|++ +.++++-...+.|+.++...+...... ...+....-..+.|+|++.   
T Consensus       214 ~~-~~-~~~~~~~~~-~~~P~giavd~~~-G~lyv~d~~~~~V~~~d~~~g~~~~~~-~~~~~~~~~~~ia~dpdG~---  285 (433)
T 4hw6_A          214 RA-SG-FTERLSLCN-ARGAKTCAVHPQN-GKIYYTRYHHAMISSYDPATGTLTEEE-VMMDTKGSNFHIVWHPTGD---  285 (433)
T ss_dssp             GG-GT-TCCEEEEEE-CSSBCCCEECTTT-CCEEECBTTCSEEEEECTTTCCEEEEE-EECSCCSSCEEEEECTTSS---
T ss_pred             CC-CC-eeccccccc-cCCCCEEEEeCCC-CeEEEEECCCCEEEEEECCCCeEEEEE-eccCCCCCcccEEEeCCCC---
Confidence            21 11 111112221 2345667888842 555555555677888876533210111 1111111223588888761   


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccC---------------CcceEEEEe---------cCCC
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMH---------------TDWVRDVAW---------APNL  221 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h---------------~~~V~~v~~---------sp~~  221 (288)
                                .+.++-...+.|..+|.......+.....+.+.               -..-..+++         .++ 
T Consensus       286 ----------~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~-  354 (433)
T 4hw6_A          286 ----------WAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDE-  354 (433)
T ss_dssp             ----------EEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCC-
T ss_pred             ----------EEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCC-
Confidence                      245565666778887764211000000011110               112345777         333 


Q ss_pred             CCCCcEEEEEeCCCcEEEEEeecCCCcccceEeecc------------------ccCeEEEEee-cCCCEEEEEeCCCcE
Q 036510          222 GLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDF------------------KTPVYRVSWS-LTGNILAVADGNNNV  282 (288)
Q Consensus       222 ~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~------------------~~~i~~~~~s-pdg~~l~s~~~d~~v  282 (288)
                         +.+.++=.....|+.++..-     ....+.+.                  -.....++++ ++|.++++=..++.|
T Consensus       355 ---g~lyvaD~~n~~I~~~~~~G-----~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rI  426 (433)
T 4hw6_A          355 ---YDFYFCDRDSHTVRVLTPEG-----RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRV  426 (433)
T ss_dssp             ---EEEEEEETTTTEEEEECTTS-----EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEE
T ss_pred             ---CcEEEEECCCCEEEEECCCC-----CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEE
Confidence               34556656667788876421     01111110                  0236789999 556555544567788


Q ss_pred             EEeEcC
Q 036510          283 TLWEEA  288 (288)
Q Consensus       283 ~~w~~~  288 (288)
                      +..+.+
T Consensus       427 r~i~~e  432 (433)
T 4hw6_A          427 RKIAPE  432 (433)
T ss_dssp             EEEEEC
T ss_pred             EEEecC
Confidence            887753

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.49  E-value=0.26  Score=45.00  Aligned_cols=50  Identities=10%  Similarity=0.164  Sum_probs=29.1

Q ss_pred             CCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          234 DGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       234 D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ++.|..||+...+..+...    ...++.+......+..+.+++.|+.|+.||.
T Consensus       443 ~g~l~a~D~~tG~~~W~~~----~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~  492 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKW----EKFAAWGGTLYTKGGLVWYATLDGYLKALDN  492 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEE----ESSCCCSBCEEETTTEEEEECTTSEEEEEET
T ss_pred             CCeEEEEECCCCCEEEEec----CCCCccceeEEECCCEEEEEcCCCeEEEEEC
Confidence            4678888776543222211    1122222333445667777889999999984

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.49  E-value=0.36  Score=41.60  Aligned_cols=180  Identities=7%  Similarity=-0.029  Sum_probs=93.9

Q ss_pred             eCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEE
Q 036510           76 SFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSV  155 (288)
Q Consensus        76 s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i  155 (288)
                      +....|+..++.... ..  ..+. .......++|++.+ +.++.+-...+.|..+++.... ..  ............+
T Consensus        93 ~~~~~I~~i~~~~~~-~~--~~~~-~~~~~~gl~~d~~~-~~ly~~D~~~~~I~r~~~~g~~-~~--~~~~~~~~~p~gl  164 (386)
T 3v65_B           93 ANRIDIRQVLPHRSE-YT--LLLN-NLENAIALDFHHRR-ELVFWSDVTLDRILRANLNGSN-VE--EVVSTGLESPGGL  164 (386)
T ss_dssp             ECBSCEEEECTTSCC-CE--EEEC-SCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCC-EE--EEECSSCSCCCCE
T ss_pred             ecCccceeeccCCCc-EE--EEec-CCCccEEEEEecCC-CeEEEEeCCCCcEEEEecCCCC-cE--EEEeCCCCCccEE
Confidence            344677777775433 11  1122 23457889999764 5555555566777777765321 11  1111111112334


Q ss_pred             EeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCC-
Q 036510          156 SWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASED-  234 (288)
Q Consensus       156 ~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D-  234 (288)
                      ++++..             +.+.++-...+.|.+.++.....  +.+  +......-+.+++.|..   +.++++-... 
T Consensus       165 avd~~~-------------g~lY~~d~~~~~I~~~~~dg~~~--~~l--~~~~l~~P~giavdp~~---g~ly~td~~~~  224 (386)
T 3v65_B          165 AVDWVH-------------DKLYWTDSGTSRIEVANLDGAHR--KVL--LWQSLEKPRAIALHPME---GTIYWTDWGNT  224 (386)
T ss_dssp             EEETTT-------------TEEEEEETTTTEEEECBTTSCSC--EEE--ECSSCSCEEEEEEETTT---TEEEEEECSSS
T ss_pred             EEEeCC-------------CeEEEEcCCCCeEEEEeCCCCce--EEe--ecCCCCCCcEEEEEcCC---CeEEEeccCCC
Confidence            444332             14455555566777766543321  111  11122335788888864   3455554444 


Q ss_pred             CcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeC-CCcEEEeE
Q 036510          235 GKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADG-NNNVTLWE  286 (288)
Q Consensus       235 ~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~-d~~v~~w~  286 (288)
                      +.|...++.-.   ....++...-.....++|+|++..|..++. .+.|..++
T Consensus       225 ~~I~r~~~dG~---~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d  274 (386)
T 3v65_B          225 PRIEASSMDGS---GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN  274 (386)
T ss_dssp             CEEEEEETTSC---SCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEEC
T ss_pred             CEEEEEeCCCC---CcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEe
Confidence            56666665421   111222222345789999998888877765 45676665

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.25  E-value=0.36  Score=39.13  Aligned_cols=204  Identities=9%  Similarity=0.037  Sum_probs=112.3

Q ss_pred             cccccceEEEEEcCCCCEEE-EeeCCCcEEEEEeCCCCceeeEEE--eccccCeEEEEecCCCCCCEEEEeeCCCcEEEe
Q 036510            8 TGHEDTVHDVAMDYYGKRLA-TASSDYSIKIIGVGNNTSQHLAKL--SGHKGAVWEVAWAHPKFGSILASCSFDGTVIIW   84 (288)
Q Consensus         8 ~~h~~~v~~~~~s~~g~~l~-s~~~d~~i~lwd~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iw   84 (288)
                      .|-.+.+.+++++|+++.|. ....++.|...|.+   ++.+..+  .+. ...-+|++..  ++.++++.-.++.+.++
T Consensus        23 ~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~---g~v~~~i~l~g~-~D~EGIa~~~--~g~~~vs~E~~~~l~~~   96 (255)
T 3qqz_A           23 AGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN---GDLIRTIPLDFV-KDLETIEYIG--DNQFVISDERDYAIYVI   96 (255)
T ss_dssp             TTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT---CCEEEEEECSSC-SSEEEEEECS--TTEEEEEETTTTEEEEE
T ss_pred             CCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC---CCEEEEEecCCC-CChHHeEEeC--CCEEEEEECCCCcEEEE
Confidence            34556799999999765554 46666766666664   3444444  332 4567788864  36666665567888888


Q ss_pred             ecCCCCceEEeEEe--e----cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecC---CCCeeeEEe----eccCCCC
Q 036510           85 KEGNSNEWIKDHVF--E----DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA---DGGWDTSRI----DQAHPVG  151 (288)
Q Consensus        85 d~~~~~~~~~~~~~--~----~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~---~~~~~~~~~----~~~~~~~  151 (288)
                      ++............  .    ..+.....|+|+|.. +.++++...+ ...+|.++.   .........    ...+...
T Consensus        97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~-~~L~va~E~~-p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d  174 (255)
T 3qqz_A           97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQD-HTFWFFKEKN-PIEVYKVNGLLSSNELHISKDKALQRQFTLDD  174 (255)
T ss_dssp             EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTT-TEEEEEEESS-SEEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred             EcCCCCeeeeeeeeccccccccccCCcceEEEeCCC-CEEEEEECcC-CceEEEEcccccCCceeeecchhhccccccCC
Confidence            87554421111111  1    133456899999974 3555544444 445555431   111111110    0112234


Q ss_pred             eeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccc-cC------CcceEEEEecCCCCCC
Q 036510          152 VTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQ-MH------TDWVRDVAWAPNLGLP  224 (288)
Q Consensus       152 v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~h------~~~V~~v~~sp~~~~~  224 (288)
                      ...+.++|...             ++++.+...+.+-.+|.....   .....+. +.      -..=..|+|.|++   
T Consensus       175 ~S~l~~dp~tg-------------~lliLS~~s~~L~~~d~~g~~---~~~~~L~~g~~~l~~~~~qpEGia~d~~G---  235 (255)
T 3qqz_A          175 VSGAEFNQQKN-------------TLLVLSHESRALQEVTLVGEV---IGEMSLTKGSRGLSHNIKQAEGVAMDASG---  235 (255)
T ss_dssp             CCEEEEETTTT-------------EEEEEETTTTEEEEECTTCCE---EEEEECSTTGGGCSSCCCSEEEEEECTTC---
T ss_pred             ceeEEEcCCCC-------------eEEEEECCCCeEEEEcCCCCE---EEEEEcCCccCCcccccCCCCeeEECCCC---
Confidence            67788888752             567777777778888854321   1122232 11      1124778999874   


Q ss_pred             CcEEEEEeCCCcEEEE
Q 036510          225 KSTIASASEDGKVIIW  240 (288)
Q Consensus       225 ~~~l~s~s~D~~i~iw  240 (288)
                       ++.++ |..+.+..+
T Consensus       236 -~lyIv-sE~n~~y~f  249 (255)
T 3qqz_A          236 -NIYIV-SEPNRFYRF  249 (255)
T ss_dssp             -CEEEE-ETTTEEEEE
T ss_pred             -CEEEE-cCCceEEEE
Confidence             44444 666544444

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.25  E-value=0.34  Score=42.32  Aligned_cols=117  Identities=17%  Similarity=0.212  Sum_probs=71.7

Q ss_pred             CeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCcee---------eeee-eccc----cCCcceEEEE
Q 036510          151 GVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWK---------MDCF-PALQ----MHTDWVRDVA  216 (288)
Q Consensus       151 ~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---------~~~~-~~~~----~h~~~V~~v~  216 (288)
                      .+..+..+|++              ++||..+ +..|.|..+-.+...         +++. ..+.    ....+|..|.
T Consensus        67 ~i~qlvlSpsG--------------~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVl  131 (452)
T 3pbp_A           67 DTFHVISSTSG--------------DLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVL  131 (452)
T ss_dssp             TTCEEEECTTS--------------SEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEE
T ss_pred             ceeEEEECCCC--------------CEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEE
Confidence            46778888876              5666553 567888777522110         1110 1111    1356799999


Q ss_pred             ecCCCCCCCcEEEEEeCCCcEEEEEeecCCC-cc-cceEeeccc-----cCeEEEEeecCCCEEEEEe--CCCcEE
Q 036510          217 WAPNLGLPKSTIASASEDGKVIIWTVAREGD-QW-EGKVLHDFK-----TPVYRVSWSLTGNILAVAD--GNNNVT  283 (288)
Q Consensus       217 ~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~-~~-~~~~~~~~~-----~~i~~~~~spdg~~l~s~~--~d~~v~  283 (288)
                      |+|-+. .+..||+-..|++||+||+..... +. .++....++     ..|.+++|.++|=.|...+  ..|.|.
T Consensus       132 WHPl~~-~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIY  206 (452)
T 3pbp_A          132 FHPKSY-RDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIF  206 (452)
T ss_dssp             ECTTBG-GGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEE
T ss_pred             eccccC-CCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEE
Confidence            999642 356899999999999999986221 11 000001112     4688999999887677655  666664

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.87  E-value=0.72  Score=39.32  Aligned_cols=178  Identities=11%  Similarity=0.032  Sum_probs=91.1

Q ss_pred             CCCcEEEeecCCCCceEEeEEeec-----CCCceeEEEeccC--CCCeEEEEEeC--CCcEEEEeecCCCCeee-EEeec
Q 036510           77 FDGTVIIWKEGNSNEWIKDHVFED-----HKSSVNSIDWAPH--ELGLCLACGSS--DGNISVFTARADGGWDT-SRIDQ  146 (288)
Q Consensus        77 ~d~~v~iwd~~~~~~~~~~~~~~~-----h~~~v~~l~~~p~--~~~~~l~sg~~--d~~i~i~d~~~~~~~~~-~~~~~  146 (288)
                      .+|.|.++|+.+.+.......+.+     .......+++.++  +...++++...  +..+.+|++..+..... ....+
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            689999999864321111112222     1235667777664  22345555544  56788888876433221 11222


Q ss_pred             cCC-CCeeEEEeCCCCCCCceecccccCCCceeEEee---------------cCCcEEEEEEeCCceeeeeeeccccCCc
Q 036510          147 AHP-VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGG---------------CDNTVKVWKLYNGIWKMDCFPALQMHTD  210 (288)
Q Consensus       147 ~~~-~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~---------------~d~~i~iwd~~~~~~~~~~~~~~~~h~~  210 (288)
                      +.. .....+...+++              ++.++..               ....=++|-+..+.  .+.   +...-.
T Consensus       161 g~~~~~pND~~v~~~G--------------~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~--~~~---~~~~l~  221 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPE--------------HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND--VRV---VAEGFD  221 (355)
T ss_dssp             CTTCSSEEEEEEEETT--------------EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTC--CEE---EEEEES
T ss_pred             cCCCCCCceEEEeCCC--------------CEEecCCcEeCCcccccchhhccCCccEEEEEECCe--EEE---eecCCc
Confidence            221 345667666665              2222221               01223344443331  111   111112


Q ss_pred             ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeec-CCCEEEEEe
Q 036510          211 WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSL-TGNILAVAD  277 (288)
Q Consensus       211 ~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~sp-dg~~l~s~~  277 (288)
                      .-+.++|+||.   ..+.++-+..+.|..|++.........+.+ ......-.++..+ +|++.+++.
T Consensus       222 ~pNGia~spDg---~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          222 FANGINISPDG---KYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             SEEEEEECTTS---SEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEE
T ss_pred             ccCcceECCCC---CEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEec
Confidence            34889999985   245566667889999998743222122222 3344566788888 588877553

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.78  E-value=0.64  Score=38.03  Aligned_cols=227  Identities=14%  Similarity=0.202  Sum_probs=105.3

Q ss_pred             CCCEEEEee-CC-----CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC-----CcEEEeecCCCC
Q 036510           22 YGKRLATAS-SD-----YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD-----GTVIIWKEGNSN   90 (288)
Q Consensus        22 ~g~~l~s~~-~d-----~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----~~v~iwd~~~~~   90 (288)
                      ++.+++.|+ .+     ..+.+||........+..+.........+..    ++.+++.|+.+     ..+.++|+.+..
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~l~v~GG~~~~~~~~~~~~~d~~~~~   89 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL----HDRIYVIGGYDGRSRLSSVECLDYTADE   89 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCCEEEEETTCCT
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE----CCEEEEEcCCCCCccCceEEEEECCCCC
Confidence            456667676 33     3577777654333332222211111122222    25777877765     468888886543


Q ss_pred             --ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC-----CcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCC
Q 036510           91 --EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD-----GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAP  163 (288)
Q Consensus        91 --~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~  163 (288)
                        .|.....++..+..-.++.+  +  +.+++.|+.+     +.+.+||+.++ .|............-..+..      
T Consensus        90 ~~~W~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~------  158 (301)
T 2vpj_A           90 DGVWYSVAPMNVRRGLAGATTL--G--DMIYVSGGFDGSRRHTSMERYDPNID-QWSMLGDMQTAREGAGLVVA------  158 (301)
T ss_dssp             TCCCEEECCCSSCCBSCEEEEE--T--TEEEEECCBCSSCBCCEEEEEETTTT-EEEEEEECSSCCBSCEEEEE------
T ss_pred             CCeeEECCCCCCCccceeEEEE--C--CEEEEEcccCCCcccceEEEEcCCCC-eEEECCCCCCCcccceEEEE------
Confidence              15444333322222222222  2  4566667644     35777877643 34332211100000011111      


Q ss_pred             CceecccccCCCceeEEeecC-----CcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCC----
Q 036510          164 GALVGSGFLDPVQKLCSGGCD-----NTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASED----  234 (288)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D----  234 (288)
                                ++.+++.|+.+     +.+.++|..+..|...  ..+......-..+.+  +    +.+++.|+.+    
T Consensus       159 ----------~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~--~~~p~~r~~~~~~~~--~----~~i~v~GG~~~~~~  220 (301)
T 2vpj_A          159 ----------SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV--TPMATKRSGAGVALL--N----DHIYVVGGFDGTAH  220 (301)
T ss_dssp             ----------TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE--CCCSSCCBSCEEEEE--T----TEEEEECCBCSSSB
T ss_pred             ----------CCEEEEECCCCCCcccceEEEEeCCCCcEEeC--CCCCcccccceEEEE--C----CEEEEEeCCCCCcc
Confidence                      12456666654     4577888877665421  122111111122232  1    3567777764    


Q ss_pred             -CcEEEEEeecCCCcccceEeeccc---cCeEEEEeecCCCEEEEEeCC-----CcEEEeEc
Q 036510          235 -GKVIIWTVAREGDQWEGKVLHDFK---TPVYRVSWSLTGNILAVADGN-----NNVTLWEE  287 (288)
Q Consensus       235 -~~i~iw~~~~~~~~~~~~~~~~~~---~~i~~~~~spdg~~l~s~~~d-----~~v~~w~~  287 (288)
                       ..+.+||+...  .+..  +....   ..-..+.  -++++++.|+.+     +.|.+||.
T Consensus       221 ~~~v~~yd~~~~--~W~~--~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~  276 (301)
T 2vpj_A          221 LSSVEAYNIRTD--SWTT--VTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDP  276 (301)
T ss_dssp             CCCEEEEETTTT--EEEE--ECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEET
T ss_pred             cceEEEEeCCCC--cEEE--CCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcC
Confidence             45888887643  2221  11111   1111222  377888888765     35666663

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=95.74  E-value=0.36  Score=44.96  Aligned_cols=62  Identities=15%  Similarity=0.190  Sum_probs=36.9

Q ss_pred             CCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCc----------e-eEEEeccCCCCeEEEEEeCCCcEEEEeecCCC
Q 036510           69 GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSS----------V-NSIDWAPHELGLCLACGSSDGNISVFTARADG  137 (288)
Q Consensus        69 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~----------v-~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~  137 (288)
                      +..+..++.++.|.-+|..+++.   ...+......          + ..+.+.    +..++.++.|+.|..+|.+++.
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~---~W~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~v~~~dg~l~alD~~tG~  138 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKE---LWRYDPEVAKVKARTSCCDAVNRGVALW----GDKVYVGTLDGRLIALDAKTGK  138 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCE---EEEECCCCCGGGGGGCTTCSCCCCCEEE----BTEEEEECTTSEEEEEETTTCC
T ss_pred             CCEEEEECCCCeEEEEECCCChh---ceEECCCCCccccccccccCCccceEEE----CCEEEEEcCCCEEEEEECCCCC
Confidence            34666677788899999887763   2222211110          0 112221    2346677889999999988764

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=95.71  E-value=0.74  Score=38.29  Aligned_cols=181  Identities=10%  Similarity=-0.079  Sum_probs=95.3

Q ss_pred             CcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCC-eeeEEeeccCCCCeeEEEe
Q 036510           79 GTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGG-WDTSRIDQAHPVGVTSVSW  157 (288)
Q Consensus        79 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~v~~i~~  157 (288)
                      ..|+..++..... .  ..+. ......+++|++.+ +.++.+-...+.|..+++..... ..........-.....+++
T Consensus        10 ~~I~~i~~~~~~~-~--~~~~-~~~~p~g~~~d~~~-~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glav   84 (316)
T 1ijq_A           10 HEVRKMTLDRSEY-T--SLIP-NLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV   84 (316)
T ss_dssp             SSEEEEETTSCCC-E--EEEC-SCSSEEEEEEETTT-TEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEE
T ss_pred             CeEEEEECCCcce-E--ehhc-CCCceEEEEEEeCC-CEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEE
Confidence            5688888765432 1  1222 23467899999864 55566666678888887753100 0011111111112344554


Q ss_pred             CCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCC-Cc
Q 036510          158 APSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASED-GK  236 (288)
Q Consensus       158 ~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D-~~  236 (288)
                      ++.+             +++.++-...+.|.+.|+...... ..+   ......-+.+++.|..   +.++++-... +.
T Consensus        85 d~~~-------------~~ly~~d~~~~~I~~~~~~g~~~~-~~~---~~~~~~P~~iavdp~~---g~ly~~d~~~~~~  144 (316)
T 1ijq_A           85 DWIH-------------SNIYWTDSVLGTVSVADTKGVKRK-TLF---RENGSKPRAIVVDPVH---GFMYWTDWGTPAK  144 (316)
T ss_dssp             ETTT-------------TEEEEEETTTTEEEEEETTSSSEE-EEE---ECTTCCEEEEEEETTT---TEEEEEECSSSCE
T ss_pred             eecC-------------CeEEEEECCCCEEEEEeCCCCceE-EEE---ECCCCCcceEEeCCCC---CEEEEEccCCCCe
Confidence            4332             144556566778888886543211 111   1122235788998864   3455554433 56


Q ss_pred             EEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeC-CCcEEEeEc
Q 036510          237 VIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADG-NNNVTLWEE  287 (288)
Q Consensus       237 i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~-d~~v~~w~~  287 (288)
                      |...++.-.   .........-.....++++|++..|..++. .+.|..+|.
T Consensus       145 I~~~~~dG~---~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~  193 (316)
T 1ijq_A          145 IKKGGLNGV---DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV  193 (316)
T ss_dssp             EEEEETTSC---CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEEEcCCCC---CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEec
Confidence            666665321   111122222246789999999888887764 457777763

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.55  E-value=0.79  Score=37.52  Aligned_cols=227  Identities=15%  Similarity=0.231  Sum_probs=102.3

Q ss_pred             CCEEEEeeCC----CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC-----CcEEEeecCCCCceE
Q 036510           23 GKRLATASSD----YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD-----GTVIIWKEGNSNEWI   93 (288)
Q Consensus        23 g~~l~s~~~d----~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----~~v~iwd~~~~~~~~   93 (288)
                      +..++.|+.+    ..+.+||........+..+......-..+..    ++.+++.|+.+     ..+.++|..+ .+|.
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~-~~W~   90 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM----AGLVFAVGGFNGSLRVRTVDSYDPVK-DQWT   90 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE----TTEEEEESCBCSSSBCCCEEEEETTT-TEEE
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE----CCEEEEEeCcCCCccccceEEECCCC-Ccee
Confidence            4566666654    3577787754433322222111111112222    26777887755     3577888765 3454


Q ss_pred             EeEEeecCCCceeEEEeccCCCCeEEEEEeCCC-----cEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceec
Q 036510           94 KDHVFEDHKSSVNSIDWAPHELGLCLACGSSDG-----NISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG  168 (288)
Q Consensus        94 ~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~  168 (288)
                      ....++..+..-..+.+  +  +.+++.|+.++     .+..||+.++ .|...............+..           
T Consensus        91 ~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~-----------  154 (302)
T 2xn4_A           91 SVANMRDRRSTLGAAVL--N--GLLYAVGGFDGSTGLSSVEAYNIKSN-EWFHVAPMNTRRSSVGVGVV-----------  154 (302)
T ss_dssp             EECCCSSCCBSCEEEEE--T--TEEEEEEEECSSCEEEEEEEEETTTT-EEEEECCCSSCCBSCEEEEE-----------
T ss_pred             eCCCCCccccceEEEEE--C--CEEEEEcCCCCCccCceEEEEeCCCC-eEeecCCCCCcccCceEEEE-----------
Confidence            44333322222222222  2  45666666553     4667776543 34322111000000011111           


Q ss_pred             ccccCCCceeEEeecC-------CcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCC-----c
Q 036510          169 SGFLDPVQKLCSGGCD-------NTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG-----K  236 (288)
Q Consensus       169 ~~~~~~~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~-----~  236 (288)
                           ++.+++.|+.+       ..+-+||..+..|...  ..+......-..+.+ .     +.+++.|+.++     .
T Consensus       155 -----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~--~~~p~~r~~~~~~~~-~-----~~iyv~GG~~~~~~~~~  221 (302)
T 2xn4_A          155 -----GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYI--AEMSTRRSGAGVGVL-N-----NLLYAVGGHDGPLVRKS  221 (302)
T ss_dssp             -----TTEEEEECCEETTTTEECCCEEEEETTTTEEEEE--CCCSSCCBSCEEEEE-T-----TEEEEECCBSSSSBCCC
T ss_pred             -----CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEEC--CCCccccccccEEEE-C-----CEEEEECCCCCCcccce
Confidence                 12445555542       3477888877655421  111111111122222 2     35777777643     5


Q ss_pred             EEEEEeecCCCcccceEeeccccC-eEEEEeecCCCEEEEEeCCC-----cEEEeEc
Q 036510          237 VIIWTVAREGDQWEGKVLHDFKTP-VYRVSWSLTGNILAVADGNN-----NVTLWEE  287 (288)
Q Consensus       237 i~iw~~~~~~~~~~~~~~~~~~~~-i~~~~~spdg~~l~s~~~d~-----~v~~w~~  287 (288)
                      +.+||+...  .+..  +.....+ -.......++++++.|+.++     .|.+||.
T Consensus       222 ~~~yd~~~~--~W~~--~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~  274 (302)
T 2xn4_A          222 VEVYDPTTN--AWRQ--VADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNP  274 (302)
T ss_dssp             EEEEETTTT--EEEE--ECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEET
T ss_pred             EEEEeCCCC--CEee--CCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcC
Confidence            788887643  2221  1111110 00111223788888887653     4777774

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=95.43  E-value=1  Score=38.07  Aligned_cols=179  Identities=7%  Similarity=-0.012  Sum_probs=95.2

Q ss_pred             CCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEE
Q 036510           77 FDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVS  156 (288)
Q Consensus        77 ~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~  156 (288)
                      ....|+..++.... .  ...+. .......++|++.+ +.++.+-...+.|..+++..... .  ............++
T Consensus        51 ~~~~I~~i~~~g~~-~--~~~~~-~~~~~~~l~~d~~~-~~ly~~D~~~~~I~r~~~~g~~~-~--~~~~~~~~~p~gla  122 (349)
T 3v64_C           51 NRIDIRQVLPHRSE-Y--TLLLN-NLENAIALDFHHRR-ELVFWSDVTLDRILRANLNGSNV-E--EVVSTGLESPGGLA  122 (349)
T ss_dssp             CBSCEEEECTTSCC-E--EEEEC-SCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSC-E--EEECSSCSCCCEEE
T ss_pred             cccceEEEeCCCCe-e--EEeec-CCCceEEEEEeccc-cEEEEEeccCCceEEEecCCCCc-e--EEEeCCCCCccEEE
Confidence            34557776664332 2  11222 23457899999864 55555555667787777653321 1  11111111233455


Q ss_pred             eCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCC-C
Q 036510          157 WAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASED-G  235 (288)
Q Consensus       157 ~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D-~  235 (288)
                      +.+..             +.+.++-...+.|.+.++.....  +.+  +......-+.+++.|..   +.++.+-... +
T Consensus       123 vd~~~-------------g~ly~~d~~~~~I~~~~~dG~~~--~~l--~~~~l~~P~~iavdp~~---g~ly~td~~~~~  182 (349)
T 3v64_C          123 VDWVH-------------DKLYWTDSGTSRIEVANLDGAHR--KVL--LWQSLEKPRAIALHPME---GTIYWTDWGNTP  182 (349)
T ss_dssp             EETTT-------------TEEEEEETTTTEEEEEETTSCSC--EEE--ECTTCSCEEEEEEETTT---TEEEEEECSSSC
T ss_pred             EecCC-------------CeEEEEcCCCCeEEEEcCCCCce--EEE--EeCCCCCcceEEEecCc---CeEEEeccCCCC
Confidence            54433             14455666667788887654321  111  11122334788999864   3455555554 6


Q ss_pred             cEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeC-CCcEEEeE
Q 036510          236 KVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADG-NNNVTLWE  286 (288)
Q Consensus       236 ~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~-d~~v~~w~  286 (288)
                      .|...++.-..   ....+...-.....++++|++..|..++. .+.|..++
T Consensus       183 ~I~r~~~dG~~---~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~  231 (349)
T 3v64_C          183 RIEASSMDGSG---RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN  231 (349)
T ss_dssp             EEEEEETTSCS---CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEEEeCCCCC---cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEe
Confidence            67666654211   11111222235789999998888877765 45677665

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.40  E-value=0.54  Score=39.57  Aligned_cols=157  Identities=8%  Similarity=0.038  Sum_probs=87.4

Q ss_pred             ceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeecc----CC--CCeeEEEe---CCCCCCCceecccccCC
Q 036510          104 SVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQA----HP--VGVTSVSW---APSTAPGALVGSGFLDP  174 (288)
Q Consensus       104 ~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~----~~--~~v~~i~~---~p~~~~~~~~~~~~~~~  174 (288)
                      --.+++|++.. +.++++.-..+.|..|+...+... ... ...    .+  ..+..|.|   .|++             
T Consensus        14 yPE~~~wd~~~-g~~~vs~l~~g~V~~~~~~~~~~~-~~~-~~~~s~~g~~~~~~sGl~~~~~D~~g-------------   77 (334)
T 2p9w_A           14 TPEDTIYDRTR-QVFYQSNLYKGRIEVYNPKTQSHF-NVV-IDGASSNGDGEQQMSGLSLLTHDNSK-------------   77 (334)
T ss_dssp             CCSCEEEETTT-TEEEEEETTTTEEEEECTTTCCEE-EEC-CTTTCCSSCCSEEEEEEEESSSSSCC-------------
T ss_pred             CCcCccCcCCC-CEEEEEeccCCEEEEEcCCCCeEE-EEe-cCCccccCCCcceeeEEEEeccCCCC-------------
Confidence            34578998753 565555557899999987533211 111 111    11  12456777   5654             


Q ss_pred             CceeEEee-------------cCCcEEEEEEe---CCceeeeeeeccc----c------CC-cceEEEEecCCCCCCCcE
Q 036510          175 VQKLCSGG-------------CDNTVKVWKLY---NGIWKMDCFPALQ----M------HT-DWVRDVAWAPNLGLPKST  227 (288)
Q Consensus       175 ~~~l~s~~-------------~d~~i~iwd~~---~~~~~~~~~~~~~----~------h~-~~V~~v~~sp~~~~~~~~  227 (288)
                       ++++...             .++.+..+|+.   ++...  ....|.    +      .. ...+.+...+++    +.
T Consensus        78 -rL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~--~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G----na  150 (334)
T 2p9w_A           78 -RLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPV--WSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG----NS  150 (334)
T ss_dssp             -EEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCS--EEEESHHHHHHHHHHHSSCCEEEEEEEECTTS----CE
T ss_pred             -cEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEE--EEecCccccccccccccccccCCceeEECCCC----CE
Confidence             4444322             36778889987   44211  011111    1      11 237888888874    55


Q ss_pred             EEEEeCC-CcEEEEEeecCCCcccceEee-cc-----ccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          228 IASASED-GKVIIWTVAREGDQWEGKVLH-DF-----KTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       228 l~s~s~D-~~i~iw~~~~~~~~~~~~~~~-~~-----~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      -|+++.- +.|...+..-  ..  ..... ..     .--.+.++++|||+.|++....+.+.-+|+
T Consensus       151 YVt~s~~~~~I~rV~pdG--~~--~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~  213 (334)
T 2p9w_A          151 YVAFALGMPAIARVSADG--KT--VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDV  213 (334)
T ss_dssp             EEEEEESSCEEEEECTTS--CC--EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEEC
T ss_pred             EEeCCCCCCeEEEEeCCC--CE--EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcC
Confidence            6667766 5544443321  11  11110 11     112568999999999999877888887775

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.28  E-value=1.5  Score=39.10  Aligned_cols=161  Identities=13%  Similarity=0.114  Sum_probs=85.8

Q ss_pred             ceEEEEEcCC--CCEEEEeeCCCcEEEEEeCCCCceeeEEEec----cccCeEEEEe-------cCCCCCCEEEEeeCCC
Q 036510           13 TVHDVAMDYY--GKRLATASSDYSIKIIGVGNNTSQHLAKLSG----HKGAVWEVAW-------AHPKFGSILASCSFDG   79 (288)
Q Consensus        13 ~v~~~~~s~~--g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~----h~~~v~~~~~-------~~~~~~~~l~s~s~d~   79 (288)
                      ....++|+|.  ++++++-...+.|++.|....   .+.++..    .......|+|       +++  +..|..+...+
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~---~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~--G~~lyvad~~~  214 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR---MLSSPLNINTIPTNRIRSIAFNKKIEGYADE--AEYMIVAIDYD  214 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT---EEEEEECCTTSSCSBEEEEEECCCBTTTBCT--TCEEEEEECCC
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC---EEEEEEccCccccCCCcEEEEeecccccCCC--CCEEEEEeCCC
Confidence            3467899983  455555444456777776432   2333321    1234788999       754  66444444332


Q ss_pred             -------cEEEeecCCCCceEE---eEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeec-------CCCCeee-
Q 036510           80 -------TVIIWKEGNSNEWIK---DHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTAR-------ADGGWDT-  141 (288)
Q Consensus        80 -------~v~iwd~~~~~~~~~---~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~-------~~~~~~~-  141 (288)
                             .|.+.+......+..   ...+... .....++++|++ +.++++--..+.|..+|+.       .+..+.+ 
T Consensus       215 ~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~-g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~  292 (496)
T 3kya_A          215 GKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPIN-GELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI  292 (496)
T ss_dssp             TTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTT-CCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred             CCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCC-CeEEEEECCCCEEEEEecccccccccCceeeccc
Confidence                   255555333122210   0122211 234677888864 5666666677889999987       3332100 


Q ss_pred             --------EEee-ccCCCCeeEEEeCCCCCCCceecccccCCCc-eeEEeecCCcEEEEEEeC
Q 036510          142 --------SRID-QAHPVGVTSVSWAPSTAPGALVGSGFLDPVQ-KLCSGGCDNTVKVWKLYN  194 (288)
Q Consensus       142 --------~~~~-~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~  194 (288)
                              .... ......-..|+|+|++              + +.++-.....|+.+|...
T Consensus       293 ~~~~~g~~~~l~~~~~~~~p~~ia~~p~G--------------~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          293 VKNNPNTFKQLFTIADPSWEFQIFIHPTG--------------KYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             GGGCTTTEEEEEECSSSSCCEEEEECTTS--------------SEEEEEETTTTEEEEEEEET
T ss_pred             ccccccccceeEecCCCCCceEEEEcCCC--------------CEEEEEeCCCCEEEEEecCC
Confidence                    0111 1112234678888887              4 345555667788877643

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=94.83  E-value=2.8  Score=39.79  Aligned_cols=183  Identities=10%  Similarity=-0.074  Sum_probs=94.7

Q ss_pred             eCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCC-eeeEEeeccCCCCeeE
Q 036510           76 SFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGG-WDTSRIDQAHPVGVTS  154 (288)
Q Consensus        76 s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~v~~  154 (288)
                      +....|+..++.... +   ..+......+..|+|++.. +.++.+-...+.|+.+++..... .....+....-.....
T Consensus       401 an~~~Ir~i~l~~~~-~---~~l~~~~~~~~gl~~d~~~-~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~G  475 (791)
T 3m0c_C          401 TNRHEVRKMTLDRSE-Y---TSLIPNLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG  475 (791)
T ss_dssp             ECBSSEEEECTTSCC-C---EEEECSCSSEEEEEEETTT-TEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             ccccceeEeeccCCc-c---eeeecCCCceEEEeecccC-CeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcce
Confidence            445667777665432 2   1122234567889998854 55555656667787777653210 0011111111122334


Q ss_pred             EEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCC
Q 036510          155 VSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASED  234 (288)
Q Consensus       155 i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D  234 (288)
                      |++.+.+             .++.++-...+.|.+.++...... .++   ......-+.|++.|..   +.++++-...
T Consensus       476 LAvD~~~-------------~~LY~tD~~~~~I~v~~ldG~~~~-~l~---~~~l~~P~gIaVDp~~---g~LYwtD~g~  535 (791)
T 3m0c_C          476 LAVDWIH-------------SNIYWTDSVLGTVSVADTKGVKRK-TLF---RENGSKPRAIVVDPVH---GFMYWTDWGT  535 (791)
T ss_dssp             EEEETTT-------------TEEEEEETTTTEEEEEETTSSSEE-EEE---ECTTCCEEEEEEETTT---TEEEEEECSS
T ss_pred             eeeeecC-------------CcEEEEecCCCeEEEEeCCCCeEE-EEE---eCCCCCcceEEEecCC---CCEEEecCCC
Confidence            4444333             145566667778888887543211 111   1222335788998864   3344444333


Q ss_pred             -CcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeC-CCcEEEeE
Q 036510          235 -GKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADG-NNNVTLWE  286 (288)
Q Consensus       235 -~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~-d~~v~~w~  286 (288)
                       ..|...++.-.   ....++..--.....|++.|.+..|+.++. .+.|...+
T Consensus       536 ~~~I~~~~~dG~---~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d  586 (791)
T 3m0c_C          536 PAKIKKGGLNGV---DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSID  586 (791)
T ss_dssp             SCEEEEEETTSC---CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCeEEEEecCCC---ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEe
Confidence             56666655321   111222222246789999998888888865 34566655

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=94.81  E-value=1.6  Score=38.99  Aligned_cols=158  Identities=11%  Similarity=0.095  Sum_probs=83.5

Q ss_pred             eeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeecc---CCCCeeEEEe-------CCCCCCCceecccccCC
Q 036510          105 VNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQA---HPVGVTSVSW-------APSTAPGALVGSGFLDP  174 (288)
Q Consensus       105 v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~---~~~~v~~i~~-------~p~~~~~~~~~~~~~~~  174 (288)
                      ...|+|.|.+.+.++++-...+.|++.|+..+. ..  .....   .......|.|       ++++             
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~-v~--~l~~~~~~~~~~p~~ia~~~~~~~~d~~G-------------  204 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM-LS--SPLNINTIPTNRIRSIAFNKKIEGYADEA-------------  204 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTE-EE--EEECCTTSSCSBEEEEEECCCBTTTBCTT-------------
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCE-EE--EEEccCccccCCCcEEEEeecccccCCCC-------------
Confidence            457888884224555555545677777776432 11  11111   1224677888       7765             


Q ss_pred             Cc-eeEEeecCC------cEEEEEEeC-Cceee----eeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEe
Q 036510          175 VQ-KLCSGGCDN------TVKVWKLYN-GIWKM----DCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV  242 (288)
Q Consensus       175 ~~-~l~s~~~d~------~i~iwd~~~-~~~~~----~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~  242 (288)
                       . ++++--.++      .|.+.+... +.+..    ..+..+ .|   ...++.+|+.   +.++++-..++.|..+|+
T Consensus       205 -~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~---p~giavdp~~---g~LYvtd~~~g~V~r~d~  276 (496)
T 3kya_A          205 -EYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQ---CNGATIHPIN---GELYFNSYEKGQVFRLDL  276 (496)
T ss_dssp             -CEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SC---CCCEEECTTT---CCEEEEETTTTEEEEECH
T ss_pred             -CEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CC---ceEEEEcCCC---CeEEEEECCCCEEEEEec
Confidence             4 344433321      255555332 12210    111111 12   3566788853   356777778888999998


Q ss_pred             e-------cCCC-----cc----cceEee-ccccCeEEEEeecCCCEEEEEeC-CCcEEEeE
Q 036510          243 A-------REGD-----QW----EGKVLH-DFKTPVYRVSWSLTGNILAVADG-NNNVTLWE  286 (288)
Q Consensus       243 ~-------~~~~-----~~----~~~~~~-~~~~~i~~~~~spdg~~l~s~~~-d~~v~~w~  286 (288)
                      .       ....     +.    ...+.. +.....+.++|+|+|++|..++. ...|+.++
T Consensus       277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid  338 (496)
T 3kya_A          277 VDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSD  338 (496)
T ss_dssp             HHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             ccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEe
Confidence            6       2211     00    001111 11245689999999997666654 55676644

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=94.69  E-value=1.5  Score=35.93  Aligned_cols=105  Identities=10%  Similarity=0.097  Sum_probs=53.2

Q ss_pred             CCEEEEeeCC--CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC----CcEEEeecCCCCceEEeE
Q 036510           23 GKRLATASSD--YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD----GTVIIWKEGNSNEWIKDH   96 (288)
Q Consensus        23 g~~l~s~~~d--~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d----~~v~iwd~~~~~~~~~~~   96 (288)
                      +.+++-|+.+  ..+.+||........+..+......-..+..    ++.+++.|+.+    ..+.++|+.+ +.|....
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~d~~~-~~W~~~~   86 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW----DNVVYILGGSQLFPIKRMDCYNVVK-DSWYSKL   86 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE----TTEEEEECCBSSSBCCEEEEEETTT-TEEEEEE
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE----CCEEEEEeCCCCCCcceEEEEeCCC-CeEEECC
Confidence            3455556653  5677888754433333222211111122222    25677888765    6777888765 3454443


Q ss_pred             EeecCCCceeEEEeccCCCCeEEEEEeCC------CcEEEEeecCC
Q 036510           97 VFEDHKSSVNSIDWAPHELGLCLACGSSD------GNISVFTARAD  136 (288)
Q Consensus        97 ~~~~h~~~v~~l~~~p~~~~~~l~sg~~d------~~i~i~d~~~~  136 (288)
                      .++..+..-..+.+  +  +.+++.|+.+      +.+.+||+.++
T Consensus        87 ~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~~d~~~~  128 (306)
T 3ii7_A           87 GPPTPRDSLAACAA--E--GKIYTSGGSEVGNSALYLFECYDTRTE  128 (306)
T ss_dssp             CCSSCCBSCEEEEE--T--TEEEEECCBBTTBSCCCCEEEEETTTT
T ss_pred             CCCccccceeEEEE--C--CEEEEECCCCCCCcEeeeEEEEeCCCC
Confidence            33322222222222  2  4566777655      45778887653

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=94.58  E-value=1.9  Score=36.69  Aligned_cols=103  Identities=14%  Similarity=0.110  Sum_probs=59.4

Q ss_pred             eeEEeec--CCcEEEEEEeCCceeeeeeeccccCC-cceEEEEecCCCCCCCcEEEEEeC---C------------CcEE
Q 036510          177 KLCSGGC--DNTVKVWKLYNGIWKMDCFPALQMHT-DWVRDVAWAPNLGLPKSTIASASE---D------------GKVI  238 (288)
Q Consensus       177 ~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~h~-~~V~~v~~sp~~~~~~~~l~s~s~---D------------~~i~  238 (288)
                      +++.-..  +.+|-+|++..+......+..+.+.. ...+++.+.+++    ...++..-   |            ..=+
T Consensus       129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G----~fyvt~~~~ftd~~~~~~e~~~~~~~g~  204 (355)
T 3sre_A          129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE----HFYATNDHYFIDPYLKSWEMHLGLAWSF  204 (355)
T ss_dssp             EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT----EEEEEESCSCSSHHHHHHHHHTTCCCEE
T ss_pred             EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCC----CEEecCCcEeCCcccccchhhccCCccE
Confidence            4454444  56788999876433334444444332 247888888873    44554431   1            2334


Q ss_pred             EEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeC-CCcEEEeEc
Q 036510          239 IWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADG-NNNVTLWEE  287 (288)
Q Consensus       239 iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~-d~~v~~w~~  287 (288)
                      +|.+...    +.+.+.+.-...+.++|||||+.|++++. .+.|+.|++
T Consensus       205 vyr~d~~----~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~  250 (355)
T 3sre_A          205 VTYYSPN----DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEK  250 (355)
T ss_dssp             EEEECTT----CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             EEEEECC----eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEE
Confidence            5544321    12222222234688999999998888864 577888774

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=94.45  E-value=1.2  Score=38.89  Aligned_cols=117  Identities=17%  Similarity=0.154  Sum_probs=73.2

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCC---c-------eeeEEEec------cccCeEEEEecCCC-CCCEEEEe
Q 036510           13 TVHDVAMDYYGKRLATASSDYSIKIIGVGNNT---S-------QHLAKLSG------HKGAVWEVAWAHPK-FGSILASC   75 (288)
Q Consensus        13 ~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~---~-------~~~~~~~~------h~~~v~~~~~~~~~-~~~~l~s~   75 (288)
                      .|..+..||+|++||-. .+.+|.|-.+..+.   .       ...+++.-      ...+|..+.|.|-. .+..|+.-
T Consensus        67 ~i~qlvlSpsG~lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLF-NDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEE-CSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEe-cCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            57789999999988866 45688888875221   0       01223321      24679999996532 35689999


Q ss_pred             eCCCcEEEeecCCCCceEE-e-E---Ee--ecCCCceeEEEeccCCCCeEEEEEeCCCcEEE
Q 036510           76 SFDGTVIIWKEGNSNEWIK-D-H---VF--EDHKSSVNSIDWAPHELGLCLACGSSDGNISV  130 (288)
Q Consensus        76 s~d~~v~iwd~~~~~~~~~-~-~---~~--~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i  130 (288)
                      -.|++|++||+......+. . +   .+  ......|.+++|.+++-..++++....|-|+-
T Consensus       146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence            9999999999875321111 0 0   11  12335788899988644444444446666643

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=94.41  E-value=2.4  Score=37.08  Aligned_cols=201  Identities=7%  Similarity=0.030  Sum_probs=97.8

Q ss_pred             eEEEEecCC-CCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC---Cc-EEEEe
Q 036510           58 VWEVAWAHP-KFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD---GN-ISVFT  132 (288)
Q Consensus        58 v~~~~~~~~-~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d---~~-i~i~d  132 (288)
                      ...++|.++ ..+.++++-.. +.|+.++..++.    ...+.........+++++++  .++++....   .. +..++
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~----v~~~~~~~~~P~giavd~dG--~lyVad~~~~~~~~gv~~~~  213 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQY----VDIKTTNIGQCADVNFTLNG--DMVVVDDQSSDTNTGIYLFT  213 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBT-SCEEEEETTTTE----EEEECCCCSCEEEEEECTTC--CEEEEECCSCTTSEEEEEEC
T ss_pred             CceEEEccccCCCEEEEEeCC-CCEEEEECCCCE----EEEeecCCCCccEEEECCCC--CEEEEcCCCCcccceEEEEE
Confidence            457888652 23555555443 888888876543    22333334457899999884  444443211   11 22222


Q ss_pred             ecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcce
Q 036510          133 ARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWV  212 (288)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V  212 (288)
                      ..  ..+....... .-.....+.++|..             +.+.++-..++.|..+|..++... ..+... +....-
T Consensus       214 ~~--~~~~~~~~~~-~~~~P~giavd~~~-------------G~lyv~d~~~~~V~~~d~~~g~~~-~~~~~~-~~~~~~  275 (433)
T 4hw6_A          214 RA--SGFTERLSLC-NARGAKTCAVHPQN-------------GKIYYTRYHHAMISSYDPATGTLT-EEEVMM-DTKGSN  275 (433)
T ss_dssp             GG--GTTCCEEEEE-ECSSBCCCEECTTT-------------CCEEECBTTCSEEEEECTTTCCEE-EEEEEC-SCCSSC
T ss_pred             CC--CCeecccccc-ccCCCCEEEEeCCC-------------CeEEEEECCCCEEEEEECCCCeEE-EEEecc-CCCCCc
Confidence            21  1111000000 01112334445522             244445555667877776544221 111111 111223


Q ss_pred             EEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCc-ccceEeecc---------------ccCeEEEEe---------e
Q 036510          213 RDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ-WEGKVLHDF---------------KTPVYRVSW---------S  267 (288)
Q Consensus       213 ~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~-~~~~~~~~~---------------~~~i~~~~~---------s  267 (288)
                      ..++|+|++   ..+.++-.....|+.++....... .....+.+.               -.....+++         .
T Consensus       276 ~~ia~dpdG---~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd  352 (433)
T 4hw6_A          276 FHIVWHPTG---DWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE  352 (433)
T ss_dssp             EEEEECTTS---SEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS
T ss_pred             ccEEEeCCC---CEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccC
Confidence            469999984   225666667788888876532111 000111110               023567888         5


Q ss_pred             cCCCEEEEEeCCCcEEEeE
Q 036510          268 LTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       268 pdg~~l~s~~~d~~v~~w~  286 (288)
                      ++|.++++=..++.|+.++
T Consensus       353 ~~g~lyvaD~~n~~I~~~~  371 (433)
T 4hw6_A          353 DEYDFYFCDRDSHTVRVLT  371 (433)
T ss_dssp             CCEEEEEEETTTTEEEEEC
T ss_pred             CCCcEEEEECCCCEEEEEC
Confidence            6666665555567777765

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=94.28  E-value=1.8  Score=35.29  Aligned_cols=189  Identities=19%  Similarity=0.255  Sum_probs=87.1

Q ss_pred             CCCEEEEeeCC-----CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCC-----cEEEeecCCCCc
Q 036510           22 YGKRLATASSD-----YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDG-----TVIIWKEGNSNE   91 (288)
Q Consensus        22 ~g~~l~s~~~d-----~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~-----~v~iwd~~~~~~   91 (288)
                      ++++++.|+.+     ..+.+||........+..+......-..+.+    ++.+++.|+.++     .+.+||+.+ +.
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~-~~  135 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKS-NE  135 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTT-TE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCC-Ce
Confidence            56677777755     3467777654433333222211111122222    257777777653     466777754 44


Q ss_pred             eEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC-------CcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510           92 WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD-------GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG  164 (288)
Q Consensus        92 ~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d-------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~  164 (288)
                      |.....++..+....++.+  +  +.+++.|+.+       +.+..||+.++ .|...............+..       
T Consensus       136 W~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~~~~~~-------  203 (302)
T 2xn4_A          136 WFHVAPMNTRRSSVGVGVV--G--GLLYAVGGYDVASRQCLSTVECYNATTN-EWTYIAEMSTRRSGAGVGVL-------  203 (302)
T ss_dssp             EEEECCCSSCCBSCEEEEE--T--TEEEEECCEETTTTEECCCEEEEETTTT-EEEEECCCSSCCBSCEEEEE-------
T ss_pred             EeecCCCCCcccCceEEEE--C--CEEEEEeCCCCCCCccccEEEEEeCCCC-cEEECCCCccccccccEEEE-------
Confidence            5443333322222222222  2  4556666542       34777887643 34322111000000011111       


Q ss_pred             ceecccccCCCceeEEeecC-----CcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCC----
Q 036510          165 ALVGSGFLDPVQKLCSGGCD-----NTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG----  235 (288)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~----  235 (288)
                               ++.+++.|+.+     +.+.+||..+..|..  +..+......-..+.+  +    +.+++.|+.++    
T Consensus       204 ---------~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~--~~~~~~~r~~~~~~~~--~----~~i~v~GG~~~~~~~  266 (302)
T 2xn4_A          204 ---------NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQ--VADMNMCRRNAGVCAV--N----GLLYVVGGDDGSCNL  266 (302)
T ss_dssp             ---------TTEEEEECCBSSSSBCCCEEEEETTTTEEEE--ECCCSSCCBSCEEEEE--T----TEEEEECCBCSSSBC
T ss_pred             ---------CCEEEEECCCCCCcccceEEEEeCCCCCEee--CCCCCCccccCeEEEE--C----CEEEEECCcCCCccc
Confidence                     12556666654     357788887766542  1122111111122222  2    35677777653    


Q ss_pred             -cEEEEEeec
Q 036510          236 -KVIIWTVAR  244 (288)
Q Consensus       236 -~i~iw~~~~  244 (288)
                       .+.+||+..
T Consensus       267 ~~v~~yd~~~  276 (302)
T 2xn4_A          267 ASVEYYNPTT  276 (302)
T ss_dssp             CCEEEEETTT
T ss_pred             ccEEEEcCCC
Confidence             478888764

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=94.23  E-value=1.9  Score=35.27  Aligned_cols=189  Identities=14%  Similarity=0.149  Sum_probs=89.3

Q ss_pred             CCCEEEEeeCC----CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC------CcEEEeecCCCCc
Q 036510           22 YGKRLATASSD----YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD------GTVIIWKEGNSNE   91 (288)
Q Consensus        22 ~g~~l~s~~~d----~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------~~v~iwd~~~~~~   91 (288)
                      +++.++.|+.+    ..+.+||........+..+.........+..    ++.+++.|+.+      ..+.+||..+ +.
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~d~~~-~~  129 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA----EGKIYTSGGSEVGNSALYLFECYDTRT-ES  129 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE----TTEEEEECCBBTTBSCCCCEEEEETTT-TE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE----CCEEEEECCCCCCCcEeeeEEEEeCCC-Cc
Confidence            56677777755    5677777654433333332211111122222    26777888765      4678888765 34


Q ss_pred             eEEeEEeecCCCceeEEEeccCCCCeEEEEEeC---------CCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCC
Q 036510           92 WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSS---------DGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTA  162 (288)
Q Consensus        92 ~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~  162 (288)
                      |.....++..+..-.++.+  +  +.+++.|+.         -+.+..||+.++ .|............-..+..     
T Consensus       130 W~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~~~~~~-----  199 (306)
T 3ii7_A          130 WHTKPSMLTQRCSHGMVEA--N--GLIYVCGGSLGNNVSGRVLNSCEVYDPATE-TWTELCPMIEARKNHGLVFV-----  199 (306)
T ss_dssp             EEEECCCSSCCBSCEEEEE--T--TEEEEECCEESCTTTCEECCCEEEEETTTT-EEEEECCCSSCCBSCEEEEE-----
T ss_pred             eEeCCCCcCCcceeEEEEE--C--CEEEEECCCCCCCCcccccceEEEeCCCCC-eEEECCCccchhhcceEEEE-----
Confidence            5443333222222222222  2  455555643         344778887654 34322110000000011111     


Q ss_pred             CCceecccccCCCceeEEeecC-----CcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCC---
Q 036510          163 PGALVGSGFLDPVQKLCSGGCD-----NTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASED---  234 (288)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D---  234 (288)
                                 ++++++.|+.+     ..+.+||+.+..|..  +..+........++.+  +    +.+++.|+.+   
T Consensus       200 -----------~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~--~~~~p~~r~~~~~~~~--~----~~i~v~GG~~~~~  260 (306)
T 3ii7_A          200 -----------KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKM--VSPMPWKGVTVKCAAV--G----SIVYVLAGFQGVG  260 (306)
T ss_dssp             -----------TTEEEEECCEETTEEBCCEEEEETTTTEEEE--CCCCSCCBSCCEEEEE--T----TEEEEEECBCSSS
T ss_pred             -----------CCEEEEEeCCCCCCCCceEEEeeCCCCcEEE--CCCCCCCccceeEEEE--C----CEEEEEeCcCCCe
Confidence                       12456666553     357788887765542  1222111111223333  2    3577778754   


Q ss_pred             --CcEEEEEeec
Q 036510          235 --GKVIIWTVAR  244 (288)
Q Consensus       235 --~~i~iw~~~~  244 (288)
                        ..+.+||+..
T Consensus       261 ~~~~~~~yd~~~  272 (306)
T 3ii7_A          261 RLGHILEYNTET  272 (306)
T ss_dssp             BCCEEEEEETTT
T ss_pred             eeeeEEEEcCCC
Confidence              4577787764

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=94.19  E-value=3.8  Score=38.59  Aligned_cols=240  Identities=13%  Similarity=0.029  Sum_probs=124.6

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEE-------E-----eccccCeEEEEecCCCCCCEEEEeeCC
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAK-------L-----SGHKGAVWEVAWAHPKFGSILASCSFD   78 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~-------~-----~~h~~~v~~~~~~~~~~~~~l~s~s~d   78 (288)
                      ...|.++...++|++.+ |...+-+.+++...........       .     .-....|.++...+  +|. |-.|+.+
T Consensus       257 ~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~--~g~-lWigt~~  332 (781)
T 3v9f_A          257 SSYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS--FNN-IWIGTWG  332 (781)
T ss_dssp             CCCEEEEEECTTSEEEE-EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECS--SCC-EEEEEBS
T ss_pred             CceEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC--CCC-EEEEecC
Confidence            35688888888887655 4443456677764332111111       0     01235688888654  354 4456666


Q ss_pred             CcEEEeecCCCCceEEeEE-------eecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEe-eccCCC
Q 036510           79 GTVIIWKEGNSNEWIKDHV-------FEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRI-DQAHPV  150 (288)
Q Consensus        79 ~~v~iwd~~~~~~~~~~~~-------~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~-~~~~~~  150 (288)
                      +-|..++..... +.....       -......|.++...++  +. +-.|+.++-|..|+..... +..... ......
T Consensus       333 ~Gl~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~v~~i~~d~~--g~-lWigt~~~Gl~~~~~~~~~-~~~~~~~~~~~~~  407 (781)
T 3v9f_A          333 GGINFISNAPPT-FHTWSYSPTQMNESSLSNKVVSSVCDDGQ--GK-LWIGTDGGGINVFENGKRV-AIYNKENRELLSN  407 (781)
T ss_dssp             SCEEEECSSCCS-CEEEC----CCCSSCCSSSCEEEEEECTT--SC-EEEEEBSSCEEEEETTEEE-EECC-----CCCS
T ss_pred             CeEEEeCCCCCc-ceeeccCccccccCCCCCcceEEEEEcCC--CC-EEEEeCCCcEEEEECCCCe-EEEccCCCCCCCc
Confidence            778888765432 111110       0112346888876654  44 4456656668888764321 110000 011224


Q ss_pred             CeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEE
Q 036510          151 GVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIAS  230 (288)
Q Consensus       151 ~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s  230 (288)
                      .|.++...+++               .|..|+.++-+..+|..++..  +...........|.++...+++     .|-.
T Consensus       408 ~v~~i~~d~~g---------------~lWigt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~v~~i~~d~~g-----~lwi  465 (781)
T 3v9f_A          408 SVLCSLKDSEG---------------NLWFGTYLGNISYYNTRLKKF--QIIELEKNELLDVRVFYEDKNK-----KIWI  465 (781)
T ss_dssp             BEEEEEECTTS---------------CEEEEETTEEEEEECSSSCEE--EECCSTTTCCCCEEEEEECTTS-----EEEE
T ss_pred             ceEEEEECCCC---------------CEEEEeccCCEEEEcCCCCcE--EEeccCCCCCCeEEEEEECCCC-----CEEE
Confidence            56666655543               355677666687787655422  1111101234568888776652     3545


Q ss_pred             EeCCCcEEEEEeecCCCcccceEeec-----cccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          231 ASEDGKVIIWTVAREGDQWEGKVLHD-----FKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       231 ~s~D~~i~iw~~~~~~~~~~~~~~~~-----~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      |.. +.|..++.....-  . .....     ....|.++...++|++.+....+| +..|+
T Consensus       466 gt~-~Gl~~~~~~~~~~--~-~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~  521 (781)
T 3v9f_A          466 GTH-AGVFVIDLASKKV--I-HHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYT  521 (781)
T ss_dssp             EET-TEEEEEESSSSSC--C-EEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEEC
T ss_pred             EEC-CceEEEeCCCCeE--E-ecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEe
Confidence            555 5688888654311  1 11111     135788999989998766543344 44444

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=94.10  E-value=0.44  Score=44.61  Aligned_cols=199  Identities=11%  Similarity=-0.007  Sum_probs=94.2

Q ss_pred             eEEEEEcCCCCEEEEe-eCCCcEEEEEeCCCC--ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510           14 VHDVAMDYYGKRLATA-SSDYSIKIIGVGNNT--SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN   90 (288)
Q Consensus        14 v~~~~~s~~g~~l~s~-~~d~~i~lwd~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~   90 (288)
                      +.+++|++.+..|.-+ ...+.|+.++++...  ......+.........|++... .+.++++-...+.|.+.++....
T Consensus       408 p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~-~g~LY~tD~~~~~I~v~d~dg~~  486 (699)
T 1n7d_A          408 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVK  486 (699)
T ss_dssp             CCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS-SSBCEECCTTTSCEEEEBSSSCC
T ss_pred             eEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee-CCcEEEEeccCCeEEEEecCCCc
Confidence            4466777755444433 345677777765310  0111111111112345666432 35667776677889888875332


Q ss_pred             ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeC-CCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecc
Q 036510           91 EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSS-DGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS  169 (288)
Q Consensus        91 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~  169 (288)
                         ....+.........+++.|.+ +.++.+-.. .+.|..+++.....  . .+....-.....|+|+|++.       
T Consensus       487 ---~~~l~~~~~~~P~giavDp~~-g~ly~td~~~~~~I~~~~~dG~~~--~-~l~~~~l~~PnGlavd~~~~-------  552 (699)
T 1n7d_A          487 ---RKTLFREQGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDI--Y-SLVTENIQWPNGITLDLLSG-------  552 (699)
T ss_dssp             ---EEEECCCSSCCCCCEECCSSS-SCCEECCCSSSCCEEBCCSSSCCC--C-EESCSSCSSCCCEEECTTTC-------
T ss_pred             ---eEEEEeCCCCCcceEEEccCC-CcEEEcccCCCCeEEEEeCCCCCe--e-EEEeCCCCCccEEEEeccCC-------
Confidence               111222222345778888864 343333322 25666655432111  1 11111111234567776642       


Q ss_pred             cccCCCceeEEeecCCcEEEEEEeCCceeeeeeec--cccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEe
Q 036510          170 GFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPA--LQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV  242 (288)
Q Consensus       170 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~  242 (288)
                            .++++-+..+.|..+|+.... ....+..  ...|.   ..+.+..+     .++++....+.|..++.
T Consensus       553 ------~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P---~glavd~~-----~lywtd~~~~~V~~~d~  612 (699)
T 1n7d_A          553 ------RLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHP---FSLAVFED-----KVFWTDIINEAIFSANR  612 (699)
T ss_dssp             ------CEEEEETTTTEEEEECSSSSC-CEEECCCSSSCSSC---CCCEEETT-----EEEEECSTTTCEEEEET
T ss_pred             ------EEEEEecCCCeEEEEccCCCc-eEEEEecCCcCCCc---eEeEEECC-----EEEEEeCCCCeEEEEEc
Confidence                  445555566778888875421 1111111  01122   23333332     45666666778888875

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=94.08  E-value=3.4  Score=37.57  Aligned_cols=49  Identities=14%  Similarity=0.115  Sum_probs=27.7

Q ss_pred             cEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEE
Q 036510          226 STIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVA  276 (288)
Q Consensus       226 ~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~  276 (288)
                      .++..++.|+.|+.+|.+..+..++...-.....  ..+.|.++|++++..
T Consensus       476 g~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~--~p~~~~~~G~~yv~~  524 (571)
T 2ad6_A          476 GLVWYATLDGYLKALDNKDGKELWNFKMPSGGIG--SPMTYSFKGKQYIGS  524 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS--CCEEEEETTEEEEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEe--eeEEEEECCEEEEEE
Confidence            4677789999999999875433222111111111  223467888765543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=94.07  E-value=1.6  Score=36.68  Aligned_cols=117  Identities=11%  Similarity=0.140  Sum_probs=70.5

Q ss_pred             ceEEEEE---cCCCCEEEEee-------------CCCcEEEEEeC---CCCceeeEEEeccc-----------cCeEEEE
Q 036510           13 TVHDVAM---DYYGKRLATAS-------------SDYSIKIIGVG---NNTSQHLAKLSGHK-----------GAVWEVA   62 (288)
Q Consensus        13 ~v~~~~~---s~~g~~l~s~~-------------~d~~i~lwd~~---~~~~~~~~~~~~h~-----------~~v~~~~   62 (288)
                      .+.+|.+   .++|+++++..             .+..+..+|+.   .+.......|.+..           .....++
T Consensus        64 ~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDva  143 (334)
T 2p9w_A           64 QMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSA  143 (334)
T ss_dssp             EEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEE
T ss_pred             eeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeE
Confidence            4578899   68887777543             25778888986   22222223333222           2377888


Q ss_pred             ecCCCCCCEEEEeeCC-CcEEEeecCCCCceEEeEEee----cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecC
Q 036510           63 WAHPKFGSILASCSFD-GTVIIWKEGNSNEWIKDHVFE----DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA  135 (288)
Q Consensus        63 ~~~~~~~~~l~s~s~d-~~v~iwd~~~~~~~~~~~~~~----~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~  135 (288)
                      ..+  +|+..++++.. +.|...+.. +... ....+.    ...-..+.+.++|+  +.+|+.....+.|.-+|++.
T Consensus       144 vD~--~GnaYVt~s~~~~~I~rV~pd-G~~~-~~~~~~~~~~~~~~G~nGIv~~pd--g~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          144 QDR--DGNSYVAFALGMPAIARVSAD-GKTV-STFAWESGNGGQRPGYSGITFDPH--SNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             ECT--TSCEEEEEEESSCEEEEECTT-SCCE-EEEEECCCCSSSCCSCSEEEEETT--TTEEEEESSSSSEEEEECSS
T ss_pred             ECC--CCCEEEeCCCCCCeEEEEeCC-CCEE-eeeeecCCCcccccCcceEEEeCC--CCEEEEEcCCCeEEEEcCCC
Confidence            764  48999988887 776655543 2211 111111    11223679999998  44555554499999999874

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=93.79  E-value=0.42  Score=44.77  Aligned_cols=199  Identities=9%  Similarity=-0.057  Sum_probs=93.2

Q ss_pred             CeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC---CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEee
Q 036510           57 AVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS---NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTA  133 (288)
Q Consensus        57 ~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~  133 (288)
                      .+.+++|.+. .+.++++-...+.|..+++...   ..  ....+.........|++.+.. +.++++-...+.|.++++
T Consensus       407 ~p~gla~d~~-~~~Ly~sD~~~~~I~~~~~~g~~~~~~--~~~~i~~~~~~P~glavD~~~-g~LY~tD~~~~~I~v~d~  482 (699)
T 1n7d_A          407 NVVALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVSS--YDTVISRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVADT  482 (699)
T ss_dssp             TCCCCEEETT-TTEEEECCTTTTSBEEEESCCCCC-CC--CCCBCCSCC--CCCEECCCSS-SBCEECCTTTSCEEEEBS
T ss_pred             ceEEEccccc-cCeEEEEecCCCeEEEEecCCCCCCcc--eEEEEeCCCCCcceEEEEeeC-CcEEEEeccCCeEEEEec
Confidence            4567788643 3455566566788888887531   11  111111111234567776543 444454455677888776


Q ss_pred             cCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecC-CcEEEEEEeCCceeeeeeeccccCCcce
Q 036510          134 RADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCD-NTVKVWKLYNGIWKMDCFPALQMHTDWV  212 (288)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~h~~~V  212 (288)
                      ...  ... .+..........|+++|...             .++++-... +.|...++.....  +.+.  ...-..-
T Consensus       483 dg~--~~~-~l~~~~~~~P~giavDp~~g-------------~ly~td~~~~~~I~~~~~dG~~~--~~l~--~~~l~~P  542 (699)
T 1n7d_A          483 KGV--KRK-TLFREQGSKPRAIVVDPVHG-------------FMYWTDWGTPAKIKKGGLNGVDI--YSLV--TENIQWP  542 (699)
T ss_dssp             SSC--CEE-EECCCSSCCCCCEECCSSSS-------------CCEECCCSSSCCEEBCCSSSCCC--CEES--CSSCSSC
T ss_pred             CCC--ceE-EEEeCCCCCcceEEEccCCC-------------cEEEcccCCCCeEEEEeCCCCCe--eEEE--eCCCCCc
Confidence            432  111 11111112234556666541             223332222 5566655533211  1110  1111234


Q ss_pred             EEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeec--cccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          213 RDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHD--FKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       213 ~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~--~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      +.|+|+|+.   +.+.++=+..+.|..+++....   ....+..  .-.....+++..+ .++++....+.|..++
T Consensus       543 nGlavd~~~---~~LY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d  611 (699)
T 1n7d_A          543 NGITLDLLS---GRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSAN  611 (699)
T ss_dssp             CCEEECTTT---CCEEEEETTTTEEEEECSSSSC---CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEE
T ss_pred             cEEEEeccC---CEEEEEecCCCeEEEEccCCCc---eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEE
Confidence            678999864   3456666677788888875321   1112111  1122344555333 3333334456777665

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=93.77  E-value=2.7  Score=35.50  Aligned_cols=76  Identities=18%  Similarity=0.209  Sum_probs=41.6

Q ss_pred             ceEEEEecCCCC---CCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          211 WVRDVAWAPNLG---LPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       211 ~V~~v~~sp~~~---~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ....+.|.+...   +.++++++--..+.|...++.......+...+......+..+++.|||.++++.+ +..=+||++
T Consensus       272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td-~~~g~I~ri  350 (353)
T 2g8s_A          272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTD-ESSGELLKV  350 (353)
T ss_dssp             CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEEC-STTEEEEEE
T ss_pred             CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEe-CCCCEEEEE
Confidence            356667754211   1246777766777787777763210001112222234789999999999766543 222345553

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=93.74  E-value=2.4  Score=34.76  Aligned_cols=227  Identities=15%  Similarity=0.175  Sum_probs=103.0

Q ss_pred             CCCCEEEEeeCC----CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeC----C-----CcEEEeecC
Q 036510           21 YYGKRLATASSD----YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSF----D-----GTVIIWKEG   87 (288)
Q Consensus        21 ~~g~~l~s~~~d----~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~----d-----~~v~iwd~~   87 (288)
                      -++..++-|+.+    ..+.+||........+..+......-..+..    ++.+++.|+.    +     ..+.++|+.
T Consensus        23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~~~~~d~~   98 (308)
T 1zgk_A           23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV----GGLLYAVGGRNNSPDGNTDSSALDCYNPM   98 (308)
T ss_dssp             CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE----TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred             CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE----CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence            356777777742    4577787654333322222111111111222    2567777765    2     457778876


Q ss_pred             CCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC-----CcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCC
Q 036510           88 NSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD-----GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTA  162 (288)
Q Consensus        88 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~  162 (288)
                      + +.|.....++..+..-..+.+  +  +.+++.|+.+     +.+..||+.++ .|............-..+.+     
T Consensus        99 ~-~~W~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~~~~~~-----  167 (308)
T 1zgk_A           99 T-NQWSPCAPMSVPRNRIGVGVI--D--GHIYAVGGSHGCIHHNSVERYEPERD-EWHLVAPMLTRRIGVGVAVL-----  167 (308)
T ss_dssp             T-TEEEECCCCSSCCBTCEEEEE--T--TEEEEECCEETTEECCCEEEEETTTT-EEEECCCCSSCCBSCEEEEE-----
T ss_pred             C-CeEeECCCCCcCccccEEEEE--C--CEEEEEcCCCCCcccccEEEECCCCC-eEeECCCCCccccceEEEEE-----
Confidence            5 345443333222222222222  2  4566666543     35777777643 23221110000000011111     


Q ss_pred             CCceecccccCCCceeEEeecC-----CcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCC---
Q 036510          163 PGALVGSGFLDPVQKLCSGGCD-----NTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASED---  234 (288)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D---  234 (288)
                                 +..+++.|+.+     +.+.+||..+..|..  +..+......-..+.+  +    +.+++.|+.+   
T Consensus       168 -----------~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~--~~~~p~~r~~~~~~~~--~----~~iyv~GG~~~~~  228 (308)
T 1zgk_A          168 -----------NRLLYAVGGFDGTNRLNSAECYYPERNEWRM--ITAMNTIRSGAGVCVL--H----NCIYAAGGYDGQD  228 (308)
T ss_dssp             -----------TTEEEEECCBCSSCBCCCEEEEETTTTEEEE--CCCCSSCCBSCEEEEE--T----TEEEEECCBCSSS
T ss_pred             -----------CCEEEEEeCCCCCCcCceEEEEeCCCCeEee--CCCCCCccccceEEEE--C----CEEEEEeCCCCCC
Confidence                       12455666554     457788887765542  1121111111122333  2    3567777765   


Q ss_pred             --CcEEEEEeecCCCcccceEeeccc---cCeEEEEeecCCCEEEEEeCC-----CcEEEeEc
Q 036510          235 --GKVIIWTVAREGDQWEGKVLHDFK---TPVYRVSWSLTGNILAVADGN-----NNVTLWEE  287 (288)
Q Consensus       235 --~~i~iw~~~~~~~~~~~~~~~~~~---~~i~~~~~spdg~~l~s~~~d-----~~v~~w~~  287 (288)
                        ..+.+||+...  .+..  +....   ..-..+.  -++++++.|+.+     ..|.+||.
T Consensus       229 ~~~~v~~yd~~~~--~W~~--~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~  285 (308)
T 1zgk_A          229 QLNSVERYDVETE--TWTF--VAPMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDP  285 (308)
T ss_dssp             BCCCEEEEETTTT--EEEE--CCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEET
T ss_pred             ccceEEEEeCCCC--cEEE--CCCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcC
Confidence              45888887643  2221  11111   1111222  377888888754     35677764

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=93.50  E-value=2.6  Score=34.31  Aligned_cols=106  Identities=11%  Similarity=0.166  Sum_probs=54.7

Q ss_pred             CCCEEEEeeCC-----CcEEEEEeCCCC---ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC-----CcEEEeecCC
Q 036510           22 YGKRLATASSD-----YSIKIIGVGNNT---SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD-----GTVIIWKEGN   88 (288)
Q Consensus        22 ~g~~l~s~~~d-----~~i~lwd~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----~~v~iwd~~~   88 (288)
                      ++++++.|+.+     ..+.+||.....   .+.+..+.........+..    ++.+++.|+.+     ..+.++|+.+
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~  137 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL----GDMIYVSGGFDGSRRHTSMERYDPNI  137 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE----CCEEEEEcccCCCcccceEEEEcCCC
Confidence            46677777765     457788875544   4333332211111122222    26677777654     3577888764


Q ss_pred             CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC-----CcEEEEeecCC
Q 036510           89 SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD-----GNISVFTARAD  136 (288)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d-----~~i~i~d~~~~  136 (288)
                       +.|.....++..+..-.++.+  +  +.+++.|+.+     +.+..||+.++
T Consensus       138 -~~W~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~d~~~~  185 (301)
T 2vpj_A          138 -DQWSMLGDMQTAREGAGLVVA--S--GVIYCLGGYDGLNILNSVEKYDPHTG  185 (301)
T ss_dssp             -TEEEEEEECSSCCBSCEEEEE--T--TEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred             -CeEEECCCCCCCcccceEEEE--C--CEEEEECCCCCCcccceEEEEeCCCC
Confidence             445544333322222222222  2  4566666654     45777887653

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=93.46  E-value=3.1  Score=35.12  Aligned_cols=98  Identities=13%  Similarity=0.046  Sum_probs=53.3

Q ss_pred             eEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEe---ccccCeEEEEecCC--CCCCEEEEeeCC-----CcEEE
Q 036510           14 VHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLS---GHKGAVWEVAWAHP--KFGSILASCSFD-----GTVII   83 (288)
Q Consensus        14 v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~---~h~~~v~~~~~~~~--~~~~~l~s~s~d-----~~v~i   83 (288)
                      -.+++|.|+|+++++ ..++.|++++ + ...+.+..+.   .-......++++++  ..+.++++-+..     +.|..
T Consensus        33 P~~ia~~pdG~l~V~-e~~g~I~~i~-~-g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r  109 (352)
T 2ism_A           33 PWALAFLPDGGMLIA-ERPGRIRLFR-E-GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR  109 (352)
T ss_dssp             EEEEEECTTSCEEEE-ETTTEEEEEE-T-TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred             ceEEEEcCCCeEEEE-eCCCeEEEEE-C-CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence            357899999986665 5668888887 3 2222232221   12345788999753  024555555533     56777


Q ss_pred             eecCCCCc--e-EEeEEee---cCCCceeEEEeccCC
Q 036510           84 WKEGNSNE--W-IKDHVFE---DHKSSVNSIDWAPHE  114 (288)
Q Consensus        84 wd~~~~~~--~-~~~~~~~---~h~~~v~~l~~~p~~  114 (288)
                      ++......  . .....++   ........+.|.|++
T Consensus       110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG  146 (352)
T 2ism_A          110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG  146 (352)
T ss_dssp             EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS
T ss_pred             EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC
Confidence            77653210  0 1111132   111134688898874

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=93.07  E-value=3.3  Score=34.29  Aligned_cols=220  Identities=8%  Similarity=-0.037  Sum_probs=114.2

Q ss_pred             CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC---CceEEeEEeecCCCceeEEE
Q 036510           33 YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS---NEWIKDHVFEDHKSSVNSID  109 (288)
Q Consensus        33 ~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~~~~h~~~v~~l~  109 (288)
                      ..|+..+++....  ...+. ......++.|.+. .+.++.+-..++.|..+++...   ..  ....+.........++
T Consensus        10 ~~I~~i~~~~~~~--~~~~~-~~~~p~g~~~d~~-~~~ly~~D~~~~~I~~~~~~g~~~~~~--~~~~~~~~~~~p~gla   83 (316)
T 1ijq_A           10 HEVRKMTLDRSEY--TSLIP-NLRNVVALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVSS--YDTVISRDIQAPDGLA   83 (316)
T ss_dssp             SSEEEEETTSCCC--EEEEC-SCSSEEEEEEETT-TTEEEEEETTTTEEEEEEC----------CEEEECSSCSCCCEEE
T ss_pred             CeEEEEECCCcce--Eehhc-CCCceEEEEEEeC-CCEEEEEECCCCcEEEEECCCCCCCcc--cEEEEeCCCCCcCEEE
Confidence            4577777754322  22222 3445678999753 3567777777899999887541   11  1112222223457888


Q ss_pred             eccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecC-CcEE
Q 036510          110 WAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCD-NTVK  188 (288)
Q Consensus       110 ~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d-~~i~  188 (288)
                      +.+.+ +.++.+-...+.|.++++... . .. ......-.....++.+|.+.             .++++.... +.|.
T Consensus        84 vd~~~-~~ly~~d~~~~~I~~~~~~g~-~-~~-~~~~~~~~~P~~iavdp~~g-------------~ly~~d~~~~~~I~  146 (316)
T 1ijq_A           84 VDWIH-SNIYWTDSVLGTVSVADTKGV-K-RK-TLFRENGSKPRAIVVDPVHG-------------FMYWTDWGTPAKIK  146 (316)
T ss_dssp             EETTT-TEEEEEETTTTEEEEEETTSS-S-EE-EEEECTTCCEEEEEEETTTT-------------EEEEEECSSSCEEE
T ss_pred             EeecC-CeEEEEECCCCEEEEEeCCCC-c-eE-EEEECCCCCcceEEeCCCCC-------------EEEEEccCCCCeEE
Confidence            87643 455555566778888876532 1 11 11121223456777777541             334444332 5666


Q ss_pred             EEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeec--cccCeEEEEe
Q 036510          189 VWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHD--FKTPVYRVSW  266 (288)
Q Consensus       189 iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~--~~~~i~~~~~  266 (288)
                      ..++.... . +.+.  ...-..-+.++++|+.   +.+.++-+..+.|..+++.... .  ......  .-.....+++
T Consensus       147 ~~~~dG~~-~-~~~~--~~~~~~P~gla~d~~~---~~lY~~D~~~~~I~~~d~dg~~-~--~~~~~~~~~~~~P~giav  216 (316)
T 1ijq_A          147 KGGLNGVD-I-YSLV--TENIQWPNGITLDLLS---GRLYWVDSKLHSISSIDVNGGN-R--KTILEDEKRLAHPFSLAV  216 (316)
T ss_dssp             EEETTSCC-E-EEEE--CSSCSCEEEEEEETTT---TEEEEEETTTTEEEEEETTSCS-C--EEEEECTTTTSSEEEEEE
T ss_pred             EEcCCCCC-e-EEEE--ECCCCCceEEEEeccC---CEEEEEECCCCeEEEEecCCCc-e--EEEeecCCccCCcEEEEE
Confidence            66654321 1 1111  1122345789999864   3455666667788888875321 1  112111  1134567777


Q ss_pred             ecCCCEEEEEeCCCcEEEeE
Q 036510          267 SLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       267 spdg~~l~s~~~d~~v~~w~  286 (288)
                      . .+..+++-...+.|..++
T Consensus       217 ~-~~~ly~~d~~~~~V~~~~  235 (316)
T 1ijq_A          217 F-EDKVFWTDIINEAIFSAN  235 (316)
T ss_dssp             E-TTEEEEEETTTTEEEEEE
T ss_pred             E-CCEEEEEECCCCeEEEEe
Confidence            4 344444444556676665

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=92.91  E-value=5.5  Score=36.45  Aligned_cols=60  Identities=8%  Similarity=0.072  Sum_probs=32.6

Q ss_pred             EEEeeCCCcEEEEEeCCCCceeeEEEe--cccc--CeEE-EEecCCCCCCEEEEee-----CCCcEEEeecCCCC
Q 036510           26 LATASSDYSIKIIGVGNNTSQHLAKLS--GHKG--AVWE-VAWAHPKFGSILASCS-----FDGTVIIWKEGNSN   90 (288)
Q Consensus        26 l~s~~~d~~i~lwd~~~~~~~~~~~~~--~h~~--~v~~-~~~~~~~~~~~l~s~s-----~d~~v~iwd~~~~~   90 (288)
                      |+.++.|+.+..+|...  ++.+-...  .+..  .+.+ ....   ++.+++.++     .++.|..+|..+++
T Consensus       124 V~v~t~dg~l~AlDa~T--G~~~W~~~~~~~~~~~~~~ssP~v~---~g~V~vg~~g~e~g~~g~v~A~D~~TG~  193 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAET--GETVWKVENSDIKVGSTLTIAPYVV---KDKVIIGSSGAELGVRGYLTAYDVKTGE  193 (599)
T ss_dssp             EEEECTTSEEEEEETTT--CCEEEEEECCCGGGTCBCCSCCEEE---TTEEEECCBCGGGTCCCEEEEEETTTCC
T ss_pred             EEEEcCCCEEEEEECCC--CCEEEeecCCCCCccceeecCCEEE---CCEEEEEecccccCCCCeEEEEECCCCc
Confidence            77788888887777643  34443332  2211  1111 0111   244444333     48999999998876

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=92.59  E-value=4.3  Score=34.42  Aligned_cols=203  Identities=16%  Similarity=0.264  Sum_probs=107.1

Q ss_pred             EEecCCC--CCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCC--CC----eEEEEEeC--CCcEEE
Q 036510           61 VAWAHPK--FGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHE--LG----LCLACGSS--DGNISV  130 (288)
Q Consensus        61 ~~~~~~~--~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~--~~----~~l~sg~~--d~~i~i  130 (288)
                      ..|.++.  ...+++.....+-+.++|+ +++   ....++.  +.++.+++-|.-  .+    ..+++...  +++|++
T Consensus        30 avw~~~~dp~~s~ii~t~k~~gL~Vydl-~G~---~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~v  103 (355)
T 3amr_A           30 AIWLDPKTPQNSKLITTNKKSGLVVYSL-DGK---MLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEI  103 (355)
T ss_dssp             EEECCSSCGGGCEEEEEETTTEEEEEET-TSC---EEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEE
T ss_pred             cEecCCCCCCccEEEEEcCCCCEEEEcC-CCc---EEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEE
Confidence            4465432  2345666677789999999 555   2333432  567888776631  01    23444444  689999


Q ss_pred             EeecC-CCCeeeEEee--c-cCC-CCeeEEEe--CCCCCCCceecccccCCCceeEEeecCCcEEEEEEeC---Cceeee
Q 036510          131 FTARA-DGGWDTSRID--Q-AHP-VGVTSVSW--APSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYN---GIWKMD  200 (288)
Q Consensus       131 ~d~~~-~~~~~~~~~~--~-~~~-~~v~~i~~--~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~  200 (288)
                      |++.. ...+......  . ... ..+.-++.  +|...            ..++.....++.+..|++..   +....+
T Consensus       104 f~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g------------~~yafV~~k~G~~~q~~l~~~~~g~~~~~  171 (355)
T 3amr_A          104 YAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTG------------KYYAMVTGKEGEFEQYELKADKNGYISGK  171 (355)
T ss_dssp             EEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTC------------CEEEEEECSSSEEEEEEEEECTTSCEEEE
T ss_pred             EEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCC------------cEEEEEECCCCeEEEEEEEeCCCCcccce
Confidence            98842 2222111000  0 000 11222222  34321            12455667789999999853   222334


Q ss_pred             eeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeec-----cccCeEEEEe--ecCCC-E
Q 036510          201 CFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHD-----FKTPVYRVSW--SLTGN-I  272 (288)
Q Consensus       201 ~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~-----~~~~i~~~~~--spdg~-~  272 (288)
                      .+..+... +.+..+...+..    .+|-.+-.|..|..++.+.... .....+..     +...+-.++.  .++|+ +
T Consensus       172 lVR~f~lg-sq~EgcvvDd~~----g~Lyv~eEd~GIw~~da~p~~~-~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gy  245 (355)
T 3amr_A          172 KVRAFKMN-SQTEGMAADDEY----GRLYIAEEDEAIWKFSAEPDGG-SNGTVIDRADGRHLTRDIEGLTIYYAADGKGY  245 (355)
T ss_dssp             EEEEEECS-SCEEEEEEETTT----TEEEEEETTTEEEEEECSTTSC-SCCEEEEEBSSSSBCSCEEEEEEEECGGGCEE
T ss_pred             EEEEecCC-CCcceEEEcCCC----CeEEEecccceEEEEeCCcCCC-CCceEEEEecCCccccCcceEEEEecCCCCEE
Confidence            55555433 346777777753    4677788886644444322110 11122221     1235667776  56666 5


Q ss_pred             EEEEe-CCCcEEEeEc
Q 036510          273 LAVAD-GNNNVTLWEE  287 (288)
Q Consensus       273 l~s~~-~d~~v~~w~~  287 (288)
                      |++++ .+++..|||.
T Consensus       246 LivSsQG~~s~~Vydr  261 (355)
T 3amr_A          246 LMASSQGNSSYAIYDR  261 (355)
T ss_dssp             EEEEEGGGTEEEEEES
T ss_pred             EEEEcCCCCEEEEEEC
Confidence            55555 7889999985

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=92.56  E-value=3.7  Score=33.60  Aligned_cols=106  Identities=16%  Similarity=0.112  Sum_probs=51.9

Q ss_pred             CCCEEEEeeC----C-----CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC-----CcEEEeecC
Q 036510           22 YGKRLATASS----D-----YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD-----GTVIIWKEG   87 (288)
Q Consensus        22 ~g~~l~s~~~----d-----~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----~~v~iwd~~   87 (288)
                      ++++++.|+.    +     ..+.+||......+.+..+.........+..    ++.+++.|+.+     ..+.++|+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~  145 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPE  145 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCC
Confidence            5667777765    2     3567777654333333222211111122222    25677777643     357778876


Q ss_pred             CCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC-----CcEEEEeecCC
Q 036510           88 NSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD-----GNISVFTARAD  136 (288)
Q Consensus        88 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d-----~~i~i~d~~~~  136 (288)
                      + +.|.....++..+..-.++.+  +  +.+++.|+.+     +.+..||+.++
T Consensus       146 ~-~~W~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~yd~~~~  194 (308)
T 1zgk_A          146 R-DEWHLVAPMLTRRIGVGVAVL--N--RLLYAVGGFDGTNRLNSAECYYPERN  194 (308)
T ss_dssp             T-TEEEECCCCSSCCBSCEEEEE--T--TEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred             C-CeEeECCCCCccccceEEEEE--C--CEEEEEeCCCCCCcCceEEEEeCCCC
Confidence            4 345443333322222222222  2  4566666654     45777887643

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=92.44  E-value=5.1  Score=34.88  Aligned_cols=160  Identities=8%  Similarity=0.027  Sum_probs=81.0

Q ss_pred             eEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCc---EEEEeec
Q 036510           58 VWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGN---ISVFTAR  134 (288)
Q Consensus        58 v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~---i~i~d~~  134 (288)
                      ...+++++...+.++++ ...+.|+.+|+....    ...+.........++|++++ ..++++....+.   ..+|..+
T Consensus       139 P~~lavdp~~~g~Lyv~-d~~~~I~~id~~~~~----v~~~~~~~~~P~~ia~d~~G-~~lyvad~~~~~~~~~v~~~~~  212 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLV-GEQHPTRLIDFEKEY----VSTVYSGLSKVRTICWTHEA-DSMIITNDQNNNDRPNNYILTR  212 (430)
T ss_dssp             CCEEEEETTEEEEEEEE-EBTEEEEEEETTTTE----EEEEECCCSCEEEEEECTTS-SEEEEEECCSCTTSEEEEEEEG
T ss_pred             CCEEEECCCCCCeEEEE-eCCCcEEEEECCCCE----EEEEecCCCCcceEEEeCCC-CEEEEEeCCCCcccceEEEEeC
Confidence            35677764112344443 333788888875432    12232234457889999874 224444432221   1222222


Q ss_pred             CCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEE
Q 036510          135 ADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRD  214 (288)
Q Consensus       135 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~  214 (288)
                      .+ .+........ ......+.++|+.             +.++++-..++.|..+|...+..  ..+..+.. ...-+.
T Consensus       213 ~g-~~~~~~~l~~-~~~p~giavdp~~-------------g~lyv~d~~~~~V~~~~~~~~~~--~~~~~~~~-~~~P~g  274 (430)
T 3tc9_A          213 ES-GFKVITELTK-GQNCNGAETHPIN-------------GELYFNSWNAGQVFRYDFTTQET--TPLFTIQD-SGWEFH  274 (430)
T ss_dssp             GG-TSCSEEEEEE-CSSCCCEEECTTT-------------CCEEEEETTTTEEEEEETTTTEE--EEEEECSS-SSCCEE
T ss_pred             CC-ceeeeeeecc-CCCceEEEEeCCC-------------CEEEEEECCCCEEEEEECCCCcE--EEEEEcCC-CCccee
Confidence            22 1211111111 1123455666632             24555655677888888765421  11111111 123478


Q ss_pred             EEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510          215 VAWAPNLGLPKSTIASASEDGKVIIWTVAR  244 (288)
Q Consensus       215 v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~  244 (288)
                      ++|+|++   ..+.++-...+.|..++...
T Consensus       275 ia~~pdG---~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          275 IQFHPSG---NYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             EEECTTS---SEEEEEETTTTEEEEEEEET
T ss_pred             EEEcCCC---CEEEEEECCCCEEEEEeCCc
Confidence            9999985   22566666788899988763

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=92.29  E-value=4.7  Score=34.18  Aligned_cols=200  Identities=12%  Similarity=0.095  Sum_probs=106.2

Q ss_pred             CCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCC--CCC---E-EEEeeC--CCcEEEeecCCC-Cce
Q 036510           22 YGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPK--FGS---I-LASCSF--DGTVIIWKEGNS-NEW   92 (288)
Q Consensus        22 ~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~---~-l~s~s~--d~~v~iwd~~~~-~~~   92 (288)
                      ..++++...+.+-+.+||+++   +.++.+..  +.++.+...+..  .++   + +++.-.  ++++++|++... .++
T Consensus        39 ~~s~ii~t~k~~gL~Vydl~G---~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l  113 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSLDG---KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL  113 (355)
T ss_dssp             GGCEEEEEETTTEEEEEETTS---CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE
T ss_pred             CccEEEEEcCCCCEEEEcCCC---cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce
Confidence            346677788888999999953   55666653  456665543210  122   1 333334  689999976321 221


Q ss_pred             EEeEE----eecCCCceeEEEe--ccCCCCeEEEEEeCCCcEEEEeecCC--CCeeeEEee-ccCCCCeeEEEeCCCCCC
Q 036510           93 IKDHV----FEDHKSSVNSIDW--APHELGLCLACGSSDGNISVFTARAD--GGWDTSRID-QAHPVGVTSVSWAPSTAP  163 (288)
Q Consensus        93 ~~~~~----~~~h~~~v~~l~~--~p~~~~~~l~sg~~d~~i~i~d~~~~--~~~~~~~~~-~~~~~~v~~i~~~p~~~~  163 (288)
                      .....    +......++.+++  +|.....++.....++.+..|.+...  +......+. -....++..+...+..  
T Consensus       114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~--  191 (355)
T 3amr_A          114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEY--  191 (355)
T ss_dssp             EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTT--
T ss_pred             eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCC--
Confidence            11100    0011145677777  66432345667778899999988532  112111111 1123456666666554  


Q ss_pred             CceecccccCCCceeEEeecCCcEEEEEEe--CCc-eeeeeeecc-ccCC-cceEEEEecCCCCCCCcEEEEEe-CCCcE
Q 036510          164 GALVGSGFLDPVQKLCSGGCDNTVKVWKLY--NGI-WKMDCFPAL-QMHT-DWVRDVAWAPNLGLPKSTIASAS-EDGKV  237 (288)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~-~~~~~~~~~-~~h~-~~V~~v~~sp~~~~~~~~l~s~s-~D~~i  237 (288)
                                  ..|..+-++.-  ||.+.  ... ...+.+..+ .++- ..+..+.+-+.... ..+|++.+ .+++.
T Consensus       192 ------------g~Lyv~eEd~G--Iw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g-~gyLivSsQG~~s~  256 (355)
T 3amr_A          192 ------------GRLYIAEEDEA--IWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADG-KGYLMASSQGNSSY  256 (355)
T ss_dssp             ------------TEEEEEETTTE--EEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGG-CEEEEEEEGGGTEE
T ss_pred             ------------CeEEEecccce--EEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCC-CEEEEEEcCCCCEE
Confidence                        57888888754  56654  211 011233222 1222 24777777432110 12555555 57899


Q ss_pred             EEEEee
Q 036510          238 IIWTVA  243 (288)
Q Consensus       238 ~iw~~~  243 (288)
                      .+||.+
T Consensus       257 ~Vydr~  262 (355)
T 3amr_A          257 AIYDRQ  262 (355)
T ss_dssp             EEEESS
T ss_pred             EEEECC
Confidence            999986

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=91.91  E-value=7.2  Score=35.48  Aligned_cols=50  Identities=16%  Similarity=0.300  Sum_probs=28.3

Q ss_pred             CCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          234 DGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       234 D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ++.|.-||+...+..++...    ..++..-.....|..+..|+.|+.++.||.
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~----~~~~~~g~~~tagglvf~g~~dg~l~A~D~  514 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKE----HLPLWAGVLATAGNLVFTGTGDGYFKAFDA  514 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEE----SSCCCSCCEEETTTEEEEECTTSEEEEEET
T ss_pred             cceEEEEECCCCCEEEEecC----CCCCcccceEeCCCEEEEECCCCcEEEEEC
Confidence            56788888765433333221    112221122234666777889999999884

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=91.75  E-value=5.4  Score=33.70  Aligned_cols=99  Identities=13%  Similarity=0.059  Sum_probs=52.9

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEe---ccccCeEEEEecCC--CCCCEEEEeeC---C----Cc
Q 036510           13 TVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLS---GHKGAVWEVAWAHP--KFGSILASCSF---D----GT   80 (288)
Q Consensus        13 ~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~---~h~~~v~~~~~~~~--~~~~~l~s~s~---d----~~   80 (288)
                      .-.+++|.|+|++++ +..++.|++++.+ +. +.+..+.   .-......|++.++  .++.++++-+.   +    ..
T Consensus        30 ~P~~ia~~pdG~l~V-~e~~g~I~~~d~~-G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLV-TERPGRLVLISPS-GK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             CEEEEEEEETTEEEE-EETTTEEEEECSS-CE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCeEEEEcCCCeEEE-EeCCCEEEEEeCC-Cc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            346788999997555 4566888887632 22 2333221   12345788999753  13556665543   3    56


Q ss_pred             EEEeecCCCC-ceE----EeEEeec-CCCceeEEEeccCC
Q 036510           81 VIIWKEGNSN-EWI----KDHVFED-HKSSVNSIDWAPHE  114 (288)
Q Consensus        81 v~iwd~~~~~-~~~----~~~~~~~-h~~~v~~l~~~p~~  114 (288)
                      |..++..... ...    ....++. .......+.|.|++
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG  146 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG  146 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC
Confidence            6666654321 110    1111221 11134678899984

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=91.60  E-value=5.2  Score=33.22  Aligned_cols=180  Identities=11%  Similarity=-0.009  Sum_probs=92.8

Q ss_pred             CCcEEEeecCCCC-ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEE
Q 036510           78 DGTVIIWKEGNSN-EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVS  156 (288)
Q Consensus        78 d~~v~iwd~~~~~-~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~  156 (288)
                      ...|+..++.... ....  .+. ....+..++|++.+ +.++.+-...+.|..+++........ ....+ -.....++
T Consensus        12 ~~~I~~i~l~~~~~~~~~--~~~-~~~~~~~ld~d~~~-~~lyw~D~~~~~I~r~~~~g~~~~~~-~~~~~-l~~p~gla   85 (318)
T 3sov_A           12 RRDLRLVDATNGKENATI--VVG-GLEDAAAVDFVFSH-GLIYWSDVSEEAIKRTEFNKTESVQN-VVVSG-LLSPDGLA   85 (318)
T ss_dssp             EEEEEEEETTCTTSCCEE--EEE-EEEEEEEEEEEGGG-TEEEEEETTTTEEEEEETTSSSCCCE-EEEEC-CSCCCEEE
T ss_pred             cCeEEEEECCCCceEEEE--Eec-CCCccEEEEEEeCC-CEEEEEECCCCcEEEEEccCCCceEE-EEcCC-CCCccEEE
Confidence            4678888876542 1111  111 12346788998864 55555556667787777653321111 11111 11233444


Q ss_pred             eCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEe-CCC
Q 036510          157 WAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASAS-EDG  235 (288)
Q Consensus       157 ~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s-~D~  235 (288)
                      +.+..             +.+.++-...+.|.++++.....  +.+  +......-+.+++.|..   +.++.+-. ..+
T Consensus        86 vd~~~-------------g~ly~~d~~~~~I~~~~~dG~~~--~~l--~~~~~~~P~giavdp~~---g~ly~td~~~~~  145 (318)
T 3sov_A           86 CDWLG-------------EKLYWTDSETNRIEVSNLDGSLR--KVL--FWQELDQPRAIALDPSS---GFMYWTDWGEVP  145 (318)
T ss_dssp             EETTT-------------TEEEEEETTTTEEEEEETTSCSC--EEE--ECSSCSSEEEEEEEGGG---TEEEEEECSSSC
T ss_pred             EEcCC-------------CeEEEEECCCCEEEEEECCCCcE--EEE--EeCCCCCccEEEEeCCC---CEEEEEecCCCC
Confidence            44432             14455656667788888654321  111  11222234788888853   23444432 245


Q ss_pred             cEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeC-CCcEEEeE
Q 036510          236 KVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADG-NNNVTLWE  286 (288)
Q Consensus       236 ~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~-d~~v~~w~  286 (288)
                      .|...+..-.   ....++..--...+.++++|++..|..++. .+.|..++
T Consensus       146 ~I~r~~~dG~---~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d  194 (318)
T 3sov_A          146 KIERAGMDGS---SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN  194 (318)
T ss_dssp             EEEEEETTSC---SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEEEEcCCC---CeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEc
Confidence            5666554311   111222222235689999998888888765 45677665

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=91.55  E-value=7.9  Score=35.22  Aligned_cols=21  Identities=14%  Similarity=0.173  Sum_probs=17.9

Q ss_pred             CEEEEeeCCCcEEEeecCCCC
Q 036510           70 SILASCSFDGTVIIWKEGNSN   90 (288)
Q Consensus        70 ~~l~s~s~d~~v~iwd~~~~~   90 (288)
                      .+++.++.+|.+.++|..+++
T Consensus       337 ~~v~~~~~~G~l~~lD~~tG~  357 (582)
T 1flg_A          337 KATAHADRNGFFYVVDRSNGK  357 (582)
T ss_dssp             EEEEEECTTSEEEEEETTTCC
T ss_pred             EEEEEECCCceEEEEECCCCC
Confidence            378889999999999988765

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=91.28  E-value=5.7  Score=33.12  Aligned_cols=53  Identities=8%  Similarity=-0.022  Sum_probs=26.9

Q ss_pred             CCCEEEEeeC-C---------CcEEEEEeCCCCceeeEEEe-ccccCeEEEEecCCCCCCEEEEeeCC
Q 036510           22 YGKRLATASS-D---------YSIKIIGVGNNTSQHLAKLS-GHKGAVWEVAWAHPKFGSILASCSFD   78 (288)
Q Consensus        22 ~g~~l~s~~~-d---------~~i~lwd~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d   78 (288)
                      ++++++.|+. +         ..+.+||........+..+. ........+..    ++.+++.|+.+
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~  128 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVH----NGKAYVTGGVN  128 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEE----TTEEEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEE----CCEEEEEeCcC
Confidence            4677777776 2         45777777544333333222 11111122222    26788888765

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=91.10  E-value=11  Score=35.86  Aligned_cols=162  Identities=11%  Similarity=-0.015  Sum_probs=83.5

Q ss_pred             cceEEEEEcCC-CCEEEEeeCCCcEEEEEeCCCC--ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCC
Q 036510           12 DTVHDVAMDYY-GKRLATASSDYSIKIIGVGNNT--SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN   88 (288)
Q Consensus        12 ~~v~~~~~s~~-g~~l~s~~~d~~i~lwd~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~   88 (288)
                      ..+..+.|++. ++++++-...+.|+.+++++..  ......+........+|++... .++++++-...+.|.+.++..
T Consensus       424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~-~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTS
T ss_pred             CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec-CCcEEEEecCCCeEEEEeCCC
Confidence            34567788774 4455555556777777765321  0112222222334566777543 256777777888999988753


Q ss_pred             CCceEEeEEeecCCCceeEEEeccCCCCeEEEEE-eCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCcee
Q 036510           89 SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACG-SSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV  167 (288)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~  167 (288)
                      ..   ....+.........|++.|.. +.++.+- +..+.|...++.-  ... .......-.....|+++|...     
T Consensus       503 ~~---~~~l~~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I~~~~~dG--~~~-~~lv~~~l~~P~GLavD~~~~-----  570 (791)
T 3m0c_C          503 VK---RKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNG--VDI-YSLVTENIQWPNGITLDLLSG-----  570 (791)
T ss_dssp             SS---EEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTS--CCE-EEEECSSCSCEEEEEEETTTT-----
T ss_pred             Ce---EEEEEeCCCCCcceEEEecCC-CCEEEecCCCCCeEEEEecCC--Cce-EEEEeCCCCCceEEEEecCCC-----
Confidence            32   112223334457899999864 4444443 2225666666532  111 112111112345666665541     


Q ss_pred             cccccCCCceeEEeecCCcEEEEEEeC
Q 036510          168 GSGFLDPVQKLCSGGCDNTVKVWKLYN  194 (288)
Q Consensus       168 ~~~~~~~~~~l~s~~~d~~i~iwd~~~  194 (288)
                              .+.++-...+.|...|+..
T Consensus       571 --------~LYwaD~~~~~I~~~d~dG  589 (791)
T 3m0c_C          571 --------RLYWVDSKLHSISSIDVNG  589 (791)
T ss_dssp             --------EEEEEETTTTEEEEEETTS
T ss_pred             --------eEEEEeCCCCcEEEEecCC
Confidence                    3344444456677777644

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=89.14  E-value=10  Score=32.59  Aligned_cols=229  Identities=9%  Similarity=-0.044  Sum_probs=114.8

Q ss_pred             EEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCc-eEEeEEeecCCC
Q 036510           25 RLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNE-WIKDHVFEDHKS  103 (288)
Q Consensus        25 ~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~-~~~~~~~~~h~~  103 (288)
                      +|+-+. ...|+..+++.....   .+......+.+++|.+. .+.++.+-...+.|..+++..... ......+.....
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~---~~~~~~~~~~~l~~d~~-~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~  159 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYT---SLIPNLRNVVALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ  159 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCE---EEECSCSCEEEEEEETT-TTEEEEEETTTTEEEEEEC------CCCEEEECSSCS
T ss_pred             eeEEec-cceeEEEccCCccee---EeccccCcceEEeeeec-cCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCC
Confidence            444333 356777776543222   22334556789999753 356667766778888888753110 001122222334


Q ss_pred             ceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeec
Q 036510          104 SVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC  183 (288)
Q Consensus       104 ~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~  183 (288)
                      ....+++.+.. +.++.+-...+.|.+.++...  ... ......-.....|+..|...             .++++-..
T Consensus       160 ~p~glavD~~~-~~lY~~d~~~~~I~~~~~~g~--~~~-~l~~~~~~~P~~iavdp~~g-------------~ly~td~~  222 (400)
T 3p5b_L          160 APDGLAVDWIH-SNIYWTDSVLGTVSVADTKGV--KRK-TLFRENGSKPRAIVVDPVHG-------------FMYWTDWG  222 (400)
T ss_dssp             CEEEEEEETTT-TEEEEEETTTTEEEEECTTTC--SEE-EEEECSSCCEEEEEEETTTT-------------EEEEEECS
T ss_pred             CcccEEEEecC-CceEEEECCCCeEEEEeCCCC--ceE-EEEeCCCCCcceEEEecccC-------------eEEEEeCC
Confidence            56778877643 455555566677877776432  111 11111223356777777541             33344322


Q ss_pred             -CCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeecc--ccC
Q 036510          184 -DNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDF--KTP  260 (288)
Q Consensus       184 -d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~--~~~  260 (288)
                       .+.|...++..... ...+   ...-..-+.++++|+.   +.+.++=+..+.|...++.-..   ....+...  -..
T Consensus       223 ~~~~I~~~~~dG~~~-~~~~---~~~l~~P~glavd~~~---~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~l~~  292 (400)
T 3p5b_L          223 TPAKIKKGGLNGVDI-YSLV---TENIQWPNGITLDLLS---GRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAH  292 (400)
T ss_dssp             SSCCEEEEETTSCSC-EEEE---CSSCSCEEEEEEETTT---TEEEEEETTTTEEEEEETTSCC---CEEEEECSSTTSS
T ss_pred             CCCEEEEEeCCCCcc-EEEE---ECCCCceEEEEEEeCC---CEEEEEECCCCEEEEEeCCCCc---cEEEEeCCCCCCC
Confidence             35666666543211 1111   1122345789999864   3455555566778888765321   11222211  123


Q ss_pred             eEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          261 VYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       261 i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      ...++. ..+..+.+-...+.|..++
T Consensus       293 P~gl~v-~~~~lywtd~~~~~V~~~~  317 (400)
T 3p5b_L          293 PFSLAV-FEDKVFWTDIINEAIFSAN  317 (400)
T ss_dssp             EEEEEE-ETTEEEEEESSSCSEEEEE
T ss_pred             CEEEEE-eCCEEEEecCCCCeEEEEE
Confidence            456665 2333444444556666655

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=88.80  E-value=8.6  Score=31.40  Aligned_cols=106  Identities=7%  Similarity=0.008  Sum_probs=52.1

Q ss_pred             CCCEEEEeeCC--------CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeC------CCcEEEeecC
Q 036510           22 YGKRLATASSD--------YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSF------DGTVIIWKEG   87 (288)
Q Consensus        22 ~g~~l~s~~~d--------~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~------d~~v~iwd~~   87 (288)
                      +++.++.|+.+        ..+.+||......+.+..+......-..+..    ++.+++.|+.      -..+.++|+.
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~yd~~  173 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH----MDLVYVIGGKGSDRKCLNKMCVYDPK  173 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE----TTEEEEECCBCTTSCBCCCEEEEETT
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE----CCEEEEEeCCCCCCcccceEEEEeCC
Confidence            46666667642        3477777654333333222211111122222    2567777776      2467888876


Q ss_pred             CCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCC-----cEEEEeecCC
Q 036510           88 NSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDG-----NISVFTARAD  136 (288)
Q Consensus        88 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~-----~i~i~d~~~~  136 (288)
                      + +.|.....++..+..-.++.+  +  +.+++.|+.++     .+..||+.++
T Consensus       174 ~-~~W~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          174 K-FEWKELAPMQTARSLFGATVH--D--GRIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             T-TEEEECCCCSSCCBSCEEEEE--T--TEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             C-CeEEECCCCCCchhceEEEEE--C--CEEEEEeccCCCCccceEEEEECCCC
Confidence            5 445443333322222222222  2  45666666544     4677777643

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=88.60  E-value=10  Score=32.02  Aligned_cols=75  Identities=12%  Similarity=0.116  Sum_probs=43.4

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEE----eccccCeEEEEecCC--CCCCEEEEee--CCCcEEEe
Q 036510           13 TVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKL----SGHKGAVWEVAWAHP--KFGSILASCS--FDGTVIIW   84 (288)
Q Consensus        13 ~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~----~~h~~~v~~~~~~~~--~~~~~l~s~s--~d~~v~iw   84 (288)
                      .-..++|.|+|+++++--..+.|++++........+..+    .........|++.++  .++.+.++-+  .+..|.-|
T Consensus        33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~  112 (347)
T 3das_A           33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM  112 (347)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred             CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence            336789999999777665588888776433222222222    123456789999753  2355555433  34455555


Q ss_pred             ecC
Q 036510           85 KEG   87 (288)
Q Consensus        85 d~~   87 (288)
                      ...
T Consensus       113 ~~~  115 (347)
T 3das_A          113 LYD  115 (347)
T ss_dssp             EBC
T ss_pred             EeC
Confidence            443

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=88.29  E-value=9.4  Score=31.18  Aligned_cols=63  Identities=11%  Similarity=0.176  Sum_probs=33.2

Q ss_pred             CCEEEEeeCC--------CcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeC-C-----CcEEEEeec
Q 036510           69 GSILASCSFD--------GTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSS-D-----GNISVFTAR  134 (288)
Q Consensus        69 ~~~l~s~s~d--------~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~-d-----~~i~i~d~~  134 (288)
                      +.+++.|+.+        ..+.++|..+ +.|.....++..+..-.++. . +  +.+++.|+. +     +.+..||+.
T Consensus        99 ~~lyv~GG~~~~~~~~~~~~~~~~d~~~-~~W~~~~~~p~~r~~~~~~~-~-~--~~iyv~GG~~~~~~~~~~~~~yd~~  173 (315)
T 4asc_A           99 NSIYVVGGREIKDGERCLDSVMCYDRLS-FKWGESDPLPYVVYGHTVLS-H-M--DLVYVIGGKGSDRKCLNKMCVYDPK  173 (315)
T ss_dssp             TEEEEECCEESSTTCCBCCCEEEEETTT-TEEEECCCCSSCCBSCEEEE-E-T--TEEEEECCBCTTSCBCCCEEEEETT
T ss_pred             CEEEEEeCCcCCCCCcccceEEEECCCC-CcEeECCCCCCcccceeEEE-E-C--CEEEEEeCCCCCCcccceEEEEeCC
Confidence            5677777743        4577888765 34544333332222222222 2 2  456666765 2     357778876


Q ss_pred             CC
Q 036510          135 AD  136 (288)
Q Consensus       135 ~~  136 (288)
                      +.
T Consensus       174 ~~  175 (315)
T 4asc_A          174 KF  175 (315)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=88.18  E-value=15  Score=33.50  Aligned_cols=65  Identities=8%  Similarity=0.010  Sum_probs=35.6

Q ss_pred             CEEEEeeC-CCcEEEeec-CCCCceEEeEEeecCCC-----------ceeEEEeccCCC--CeEEEEEeCCCcEEEEeec
Q 036510           70 SILASCSF-DGTVIIWKE-GNSNEWIKDHVFEDHKS-----------SVNSIDWAPHEL--GLCLACGSSDGNISVFTAR  134 (288)
Q Consensus        70 ~~l~s~s~-d~~v~iwd~-~~~~~~~~~~~~~~h~~-----------~v~~l~~~p~~~--~~~l~sg~~d~~i~i~d~~  134 (288)
                      ..+..++. ++.|.-+|. .+++.   ...+.....           ....+.+.|.+.  ..++..++.|+.|.-+|.+
T Consensus        63 g~vyv~~~~~~~v~AlD~~~tG~~---lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~  139 (599)
T 1w6s_A           63 GKMYIHTSFPNNTFALGLDDPGTI---LWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAE  139 (599)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSE---EEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETT
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCcE---EEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECC
Confidence            34555555 788888888 77653   222221110           012244433321  1226677889999888887


Q ss_pred             CCC
Q 036510          135 ADG  137 (288)
Q Consensus       135 ~~~  137 (288)
                      ++.
T Consensus       140 TG~  142 (599)
T 1w6s_A          140 TGE  142 (599)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=87.26  E-value=13  Score=31.80  Aligned_cols=203  Identities=10%  Similarity=-0.024  Sum_probs=103.2

Q ss_pred             cceEEEEEcCCC-CEEEEeeCCCcEEEEEeCCCC--ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCC
Q 036510           12 DTVHDVAMDYYG-KRLATASSDYSIKIIGVGNNT--SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN   88 (288)
Q Consensus        12 ~~v~~~~~s~~g-~~l~s~~~d~~i~lwd~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~   88 (288)
                      ..+..++|++.+ +++.+-...+.|+.++.++..  ......+.........+++... .+.++++-...+.|.+.++..
T Consensus       112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~-~~~lY~~d~~~~~I~~~~~~g  190 (400)
T 3p5b_L          112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKG  190 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETT-TTEEEEEETTTTEEEEECTTT
T ss_pred             CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEec-CCceEEEECCCCeEEEEeCCC
Confidence            455678888754 444444456777777765311  0111122223345567777642 366777777788898888753


Q ss_pred             CCceEEeEEeecCCCceeEEEeccCCCCeEEEEE-eCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCcee
Q 036510           89 SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACG-SSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV  167 (288)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~  167 (288)
                      ..   ....+.........|++.|.. +.++.+- +..+.|...++.-...   .......-.....|+++|...     
T Consensus       191 ~~---~~~l~~~~~~~P~~iavdp~~-g~ly~td~~~~~~I~~~~~dG~~~---~~~~~~~l~~P~glavd~~~~-----  258 (400)
T 3p5b_L          191 VK---RKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDI---YSLVTENIQWPNGITLDLLSG-----  258 (400)
T ss_dssp             CS---EEEEEECSSCCEEEEEEETTT-TEEEEEECSSSCCEEEEETTSCSC---EEEECSSCSCEEEEEEETTTT-----
T ss_pred             Cc---eEEEEeCCCCCcceEEEeccc-CeEEEEeCCCCCEEEEEeCCCCcc---EEEEECCCCceEEEEEEeCCC-----
Confidence            32   112223233457889999864 4444443 2235676666542211   111111112356677777652     


Q ss_pred             cccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEe
Q 036510          168 GSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV  242 (288)
Q Consensus       168 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~  242 (288)
                              .+.++-...+.|...|+.... ....+ ...+.-..-..+....     +..+++-...+.|..++.
T Consensus       259 --------~lY~aD~~~~~I~~~d~dG~~-~~~~~-~~~~~l~~P~gl~v~~-----~~lywtd~~~~~V~~~~~  318 (400)
T 3p5b_L          259 --------RLYWVDSKLHSISSIDVNGGN-RKTIL-EDEKRLAHPFSLAVFE-----DKVFWTDIINEAIFSANR  318 (400)
T ss_dssp             --------EEEEEETTTTEEEEEETTSCC-CEEEE-ECSSTTSSEEEEEEET-----TEEEEEESSSCSEEEEES
T ss_pred             --------EEEEEECCCCEEEEEeCCCCc-cEEEE-eCCCCCCCCEEEEEeC-----CEEEEecCCCCeEEEEEc
Confidence                    344454556678888865431 11111 1111111223555533     245666666677777774

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=87.18  E-value=8.9  Score=32.23  Aligned_cols=106  Identities=12%  Similarity=0.172  Sum_probs=54.6

Q ss_pred             eeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecc---ccCCcceEEEEecCCCCCCCcEE
Q 036510          152 VTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPAL---QMHTDWVRDVAWAPNLGLPKSTI  228 (288)
Q Consensus       152 v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---~~h~~~V~~v~~sp~~~~~~~~l  228 (288)
                      -..+.|.|++              +++++ ..++.|.+++  .+..  +.+..+   .........++|+|+....+...
T Consensus        33 P~~ia~~pdG--------------~l~V~-e~~g~I~~i~--~g~~--~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lY   93 (352)
T 2ism_A           33 PWALAFLPDG--------------GMLIA-ERPGRIRLFR--EGRL--STYAELSVYHRGESGLLGLALHPRFPQEPYVY   93 (352)
T ss_dssp             EEEEEECTTS--------------CEEEE-ETTTEEEEEE--TTEE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEE
T ss_pred             ceEEEEcCCC--------------eEEEE-eCCCeEEEEE--CCCc--cEeecceEeecCCCCceeEEECCCCCCCCEEE
Confidence            4678888886              44444 4568888887  4321  111111   11223468899999732112444


Q ss_pred             EEEeCC-----CcEEEEEeecCCCcccceEeeccc------cCeEEEEeecCCCEEEEE
Q 036510          229 ASASED-----GKVIIWTVAREGDQWEGKVLHDFK------TPVYRVSWSLTGNILAVA  276 (288)
Q Consensus       229 ~s~s~D-----~~i~iw~~~~~~~~~~~~~~~~~~------~~i~~~~~spdg~~l~s~  276 (288)
                      ++-..+     ..|..++...........++....      .....++|.|||.+.++-
T Consensus        94 v~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A           94 AYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred             EEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence            554433     556667665211000111121111      123589999999765553

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=84.55  E-value=24  Score=32.33  Aligned_cols=220  Identities=8%  Similarity=-0.028  Sum_probs=114.2

Q ss_pred             CCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEe
Q 036510           31 SDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDW  110 (288)
Q Consensus        31 ~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~  110 (288)
                      ....|+.-+++.........+.+ -..+.+++|.+. .+.++.+-..++.|..+++.... .  ...+.........+++
T Consensus        13 ~~~~I~~i~l~~~~~~~~~~~~~-~~~~~~l~~d~~-~~~lywtD~~~~~I~r~~~~g~~-~--~~v~~~g~~~P~GlAv   87 (628)
T 4a0p_A           13 RRADIRRISLETNNNNVAIPLTG-VKEASALDFDVT-DNRIYWTDISLKTISRAFMNGSA-L--EHVVEFGLDYPEGMAV   87 (628)
T ss_dssp             ETTEEEEEESSCTTCEEECCCCS-CSCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCS-C--EEEECSSCSCCCEEEE
T ss_pred             eCCcEEEEECCCCCcceEEEcCC-CCceEEEEEECC-CCEEEEEECCCCeEEEEECCCCC-c--EEEEeCCCCCcceEEE
Confidence            45677777776432222212222 345788999754 46777777788999888875332 1  1122222234667777


Q ss_pred             ccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEe-ecCCcEEE
Q 036510          111 APHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSG-GCDNTVKV  189 (288)
Q Consensus       111 ~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~-~~d~~i~i  189 (288)
                      .+.. +.++.+-...+.|.+.++.....  . ......-.....|+..|...             .++++- +....|..
T Consensus        88 D~~~-~~LY~tD~~~~~I~v~~~dG~~~--~-~l~~~~l~~P~~iavdp~~G-------------~lY~tD~g~~~~I~r  150 (628)
T 4a0p_A           88 DWLG-KNLYWADTGTNRIEVSKLDGQHR--Q-VLVWKDLDSPRALALDPAEG-------------FMYWTEWGGKPKIDR  150 (628)
T ss_dssp             ETTT-TEEEEEETTTTEEEEEETTSTTC--E-EEECSSCCCEEEEEEETTTT-------------EEEEEECSSSCEEEE
T ss_pred             EeCC-CEEEEEECCCCEEEEEecCCCcE--E-EEEeCCCCCcccEEEccCCC-------------eEEEeCCCCCCEEEE
Confidence            6653 45555556667788877643211  1 11112223456777777541             333332 22345555


Q ss_pred             EEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecC
Q 036510          190 WKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLT  269 (288)
Q Consensus       190 wd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spd  269 (288)
                      .++....  .+.+.  . .-.+-+.+.+.++.   +.+.++=...+.|...++.... .   +.+...-.....+++.. 
T Consensus       151 ~~~dG~~--~~~l~--~-~~~~P~GlalD~~~---~~LY~aD~~~~~I~~~d~dG~~-~---~v~~~~l~~P~glav~~-  217 (628)
T 4a0p_A          151 AAMDGSE--RTTLV--P-NVGRANGLTIDYAK---RRLYWTDLDTNLIESSNMLGLN-R---EVIADDLPHPFGLTQYQ-  217 (628)
T ss_dssp             EETTSCS--CEEEE--C-SCSSEEEEEEETTT---TEEEEEETTTTEEEEEETTSCS-C---EEEEECCSCEEEEEEET-
T ss_pred             EeCCCCc--eEEEE--C-CCCCcceEEEcccc---CEEEEEECCCCEEEEEcCCCCc-e---EEeeccCCCceEEEEEC-
Confidence            5543321  11111  1 22345788998864   3455555566778888765321 1   22222223445677654 


Q ss_pred             CCEEEEEe-CCCcEEEeE
Q 036510          270 GNILAVAD-GNNNVTLWE  286 (288)
Q Consensus       270 g~~l~s~~-~d~~v~~w~  286 (288)
                       ..+..++ ..+.|...|
T Consensus       218 -~~ly~tD~~~~~I~~~d  234 (628)
T 4a0p_A          218 -DYIYWTDWSRRSIERAN  234 (628)
T ss_dssp             -TEEEEEETTTTEEEEEE
T ss_pred             -CEEEEecCCCCEEEEEE
Confidence             3444444 356666554

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=84.42  E-value=26  Score=32.55  Aligned_cols=111  Identities=11%  Similarity=0.114  Sum_probs=58.0

Q ss_pred             CCCEEEEeeCCC------cEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCC--cEEEeecCCCCceE
Q 036510           22 YGKRLATASSDY------SIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDG--TVIIWKEGNSNEWI   93 (288)
Q Consensus        22 ~g~~l~s~~~d~------~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~--~v~iwd~~~~~~~~   93 (288)
                      +++.++.||.++      .+.+||........+..+......-..+.+ .  ++.+++.|+.++  .+.+||..+ +.|.
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~-~--~~~iyv~GG~~~~~~v~~yd~~t-~~W~  526 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSL-P--DGNVLILGGVTEGPAMLLYNVTE-EIFK  526 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEEC-T--TSCEEEECCBCSSCSEEEEETTT-TEEE
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEE-c--CCEEEEECCCCCCCCEEEEECCC-CceE
Confidence            677778777543      466777654333333222211111122222 2  367888887655  688888865 4464


Q ss_pred             EeEE---eecCCCceeEEEeccCCCCeEEEEEeC--C-----CcEEEEeecCCC
Q 036510           94 KDHV---FEDHKSSVNSIDWAPHELGLCLACGSS--D-----GNISVFTARADG  137 (288)
Q Consensus        94 ~~~~---~~~h~~~v~~l~~~p~~~~~~l~sg~~--d-----~~i~i~d~~~~~  137 (288)
                      ....   ++..+..-.++.+... .+.+++.|+.  +     +.+..||+.++.
T Consensus       527 ~~~~~g~~p~~r~~~~a~v~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          527 DVTPKDEFFQNSLVSAGLEFDPV-SKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             ECCCSSGGGGSCCBSCEEEEETT-TTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             EccCCCCCCCcccceeEEEEeCC-CCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            4332   2222222233444433 2456666765  2     457888887654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=83.20  E-value=23  Score=31.00  Aligned_cols=55  Identities=13%  Similarity=0.224  Sum_probs=30.1

Q ss_pred             CceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEee-cc-----CCCCeeEEEeCCC
Q 036510          103 SSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRID-QA-----HPVGVTSVSWAPS  160 (288)
Q Consensus       103 ~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~-~~-----~~~~v~~i~~~p~  160 (288)
                      ...+.++|.|+  +.++++-...+.|++++...+ ........ ..     .......|+|+|+
T Consensus        27 ~~P~~~a~~pd--G~l~V~e~~gg~I~~~~~~~g-~~~~~~~~~~~~~~~~g~~Gllgia~~Pd   87 (454)
T 1cru_A           27 NKPHALLWGPD--NQIWLTERATGKILRVNPESG-SVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (454)
T ss_dssp             SSEEEEEECTT--SCEEEEETTTCEEEEECTTTC-CEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEcCC--CcEEEEEcCCCEEEEEECCCC-cEeEEecCCccccccCCCCceeEEEECCC
Confidence            45679999998  565555433346777764322 22222111 11     1234668888886

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=82.45  E-value=20  Score=29.64  Aligned_cols=223  Identities=7%  Similarity=-0.019  Sum_probs=111.0

Q ss_pred             CCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEec
Q 036510           32 DYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWA  111 (288)
Q Consensus        32 d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~  111 (288)
                      ...|+..+++.........+.+ .....++.|.+. .+.++.+-...+.|..+++......  ...+.........+++.
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~-~~~~~~ld~d~~-~~~lyw~D~~~~~I~r~~~~g~~~~--~~~~~~~l~~p~glavd   87 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGG-LEDAAAVDFVFS-HGLIYWSDVSEEAIKRTEFNKTESV--QNVVVSGLLSPDGLACD   87 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEE-EEEEEEEEEEGG-GTEEEEEETTTTEEEEEETTSSSCC--CEEEEECCSCCCEEEEE
T ss_pred             cCeEEEEECCCCceEEEEEecC-CCccEEEEEEeC-CCEEEEEECCCCcEEEEEccCCCce--EEEEcCCCCCccEEEEE
Confidence            3567777776432111111222 234568888753 3567777777888988887543211  11122222345677777


Q ss_pred             cCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEe-ecCCcEEEE
Q 036510          112 PHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSG-GCDNTVKVW  190 (288)
Q Consensus       112 p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~-~~d~~i~iw  190 (288)
                      +.. +.++.+-...+.|.++++.....  . ......-.....|+..|...             .++++- +..+.|...
T Consensus        88 ~~~-g~ly~~d~~~~~I~~~~~dG~~~--~-~l~~~~~~~P~giavdp~~g-------------~ly~td~~~~~~I~r~  150 (318)
T 3sov_A           88 WLG-EKLYWTDSETNRIEVSNLDGSLR--K-VLFWQELDQPRAIALDPSSG-------------FMYWTDWGEVPKIERA  150 (318)
T ss_dssp             TTT-TEEEEEETTTTEEEEEETTSCSC--E-EEECSSCSSEEEEEEEGGGT-------------EEEEEECSSSCEEEEE
T ss_pred             cCC-CeEEEEECCCCEEEEEECCCCcE--E-EEEeCCCCCccEEEEeCCCC-------------EEEEEecCCCCEEEEE
Confidence            643 45555555667888887653211  1 11112223345666666531             233333 224556666


Q ss_pred             EEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCC
Q 036510          191 KLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTG  270 (288)
Q Consensus       191 d~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg  270 (288)
                      ++..... ...+   ...-..-+.++++|+.   +.+.++=+..+.|..+++.-..   ....+.+.......+++. .+
T Consensus       151 ~~dG~~~-~~~~---~~~l~~Pnglavd~~~---~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~~P~glav~-~~  219 (318)
T 3sov_A          151 GMDGSSR-FIII---NSEIYWPNGLTLDYEE---QKLYWADAKLNFIHKSNLDGTN---RQAVVKGSLPHPFALTLF-ED  219 (318)
T ss_dssp             ETTSCSC-EEEE---CSSCSCEEEEEEETTT---TEEEEEETTTTEEEEEETTSCS---CEEEECSCCSCEEEEEEE-TT
T ss_pred             EcCCCCe-EEEE---ECCCCCccEEEEeccC---CEEEEEECCCCEEEEEcCCCCc---eEEEecCCCCCceEEEEe-CC
Confidence            6543211 1111   1112234789999864   3455565667788888865221   112222122345566663 22


Q ss_pred             CEEEEEeCCCcEEEeE
Q 036510          271 NILAVADGNNNVTLWE  286 (288)
Q Consensus       271 ~~l~s~~~d~~v~~w~  286 (288)
                      ..+.+-...+.|..++
T Consensus       220 ~lywtd~~~~~V~~~~  235 (318)
T 3sov_A          220 ILYWTDWSTHSILACN  235 (318)
T ss_dssp             EEEEEETTTTEEEEEE
T ss_pred             EEEEEecCCCeEEEEE
Confidence            3333333455666554

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=82.22  E-value=19  Score=29.33  Aligned_cols=109  Identities=14%  Similarity=0.166  Sum_probs=51.6

Q ss_pred             CCCEEEEeeCC-------CcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeC------CCcEEEeecCC
Q 036510           22 YGKRLATASSD-------YSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSF------DGTVIIWKEGN   88 (288)
Q Consensus        22 ~g~~l~s~~~d-------~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~------d~~v~iwd~~~   88 (288)
                      ++++++.|+.+       ..+.+||......+.+..+......-..+..    ++.+++.|+.      -..+.++|+.+
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~yd~~~  184 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISH----NGMIYCLGGKTDDKKCTNRVFIYNPKK  184 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEE----TTEEEEECCEESSSCBCCCEEEEETTT
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEE----CCEEEEEcCCCCCCCccceEEEEcCCC
Confidence            46677777754       2366666644333332222111111112222    2567777764      24588888865


Q ss_pred             CCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC-----CcEEEEeecCCCCee
Q 036510           89 SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD-----GNISVFTARADGGWD  140 (288)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d-----~~i~i~d~~~~~~~~  140 (288)
                       +.|.....++..+....++.+  +  +.+++.|+.+     +.+.+||+.++ .|.
T Consensus       185 -~~W~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~  235 (318)
T 2woz_A          185 -GDWKDLAPMKTPRSMFGVAIH--K--GKIVIAGGVTEDGLSASVEAFDLKTN-KWE  235 (318)
T ss_dssp             -TEEEEECCCSSCCBSCEEEEE--T--TEEEEEEEEETTEEEEEEEEEETTTC-CEE
T ss_pred             -CEEEECCCCCCCcccceEEEE--C--CEEEEEcCcCCCCccceEEEEECCCC-eEE
Confidence             446544333222222222222  2  4556666543     24667777653 353

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=80.14  E-value=22  Score=28.86  Aligned_cols=63  Identities=10%  Similarity=0.212  Sum_probs=31.7

Q ss_pred             CCEEEEeeCC-------CcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeC------CCcEEEEeecC
Q 036510           69 GSILASCSFD-------GTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSS------DGNISVFTARA  135 (288)
Q Consensus        69 ~~~l~s~s~d-------~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~------d~~i~i~d~~~  135 (288)
                      +.+++.|+.+       ..+.++|..+ +.|.....++..+..- ++.. .+  +.+++.|+.      -+.+..||+.+
T Consensus       110 ~~iyv~GG~~~~~~~~~~~~~~yd~~~-~~W~~~~~~p~~r~~~-~~~~-~~--~~iyv~GG~~~~~~~~~~~~~yd~~~  184 (318)
T 2woz_A          110 DKIYVVAGKDLQTEASLDSVLCYDPVA-AKWSEVKNLPIKVYGH-NVIS-HN--GMIYCLGGKTDDKKCTNRVFIYNPKK  184 (318)
T ss_dssp             TEEEEEEEEBTTTCCEEEEEEEEETTT-TEEEEECCCSSCEESC-EEEE-ET--TEEEEECCEESSSCBCCCEEEEETTT
T ss_pred             CEEEEEcCccCCCCcccceEEEEeCCC-CCEeECCCCCCccccc-EEEE-EC--CEEEEEcCCCCCCCccceEEEEcCCC
Confidence            5677777754       3466777754 3454433222111111 1222 12  455666653      23578888765


Q ss_pred             C
Q 036510          136 D  136 (288)
Q Consensus       136 ~  136 (288)
                      +
T Consensus       185 ~  185 (318)
T 2woz_A          185 G  185 (318)
T ss_dssp             T
T ss_pred             C
Confidence            3

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	288
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-20
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-17
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.002
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-11
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-14
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-13
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	9e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-08
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.001
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.001
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-06
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.6 bits (210), Expect = 8e-20
 Identities = 63/331 (19%), Positives = 108/331 (32%), Gaps = 67/331 (20%)

Query: 2   PPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEV 61
           P +   +GH   V  V        + +AS D +IK+      T      L GH  +V ++
Sbjct: 8   PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDY--ETGDFERTLKGHTDSVQDI 65

Query: 62  AWAHPKF----------------------------------------GSILASCSFDGTV 81
           ++ H                                           G  + S S D T+
Sbjct: 66  SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI 125

Query: 82  IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDT 141
            +W             F  H+  V  +       G  +A  S+D  + V+        + 
Sbjct: 126 KMW---EVQTGYCVKTFTGHREWVRMVRPNQD--GTLIASCSNDQTVRVWVVA---TKEC 177

Query: 142 SRIDQAHPVGVTSVSWAPSTAPGALVG------SGFLDPVQKLCSGGCDNTVKVWKLYNG 195
               + H   V  +SWAP ++  ++             P   L SG  D T+K+W +  G
Sbjct: 178 KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 237

Query: 196 IWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLH 255
                C   L  H +WVR V +          I S ++D  + +W      ++   K L+
Sbjct: 238 ----MCLMTLVGHDNWVRGVLFHSG----GKFILSCADDKTLRVWDYK---NKRCMKTLN 286

Query: 256 DFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286
             +  V  + +  T   +     +  V +WE
Sbjct: 287 AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.0 bits (128), Expect = 5e-09
 Identities = 50/284 (17%), Positives = 80/284 (28%), Gaps = 51/284 (17%)

Query: 42  NNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDH 101
                    LSGH+  V  V + HP   S++ S S D T+ +W   +      +   + H
Sbjct: 4   IPRPPEKYALSGHRSPVTRVIF-HPV-FSVMVSASEDATIKVW---DYETGDFERTLKGH 58

Query: 102 KSSVNSIDWAPHELGLCLACGSSDGNISVFTARAD-----GGWDTSRIDQAHPVGVTSVS 156
             SV  I +      L          +  F          G           P G   VS
Sbjct: 59  TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVS 118

Query: 157 WAPSTA------------------PGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWK 198
            +                         +           + S   D TV+VW     +  
Sbjct: 119 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV----VAT 174

Query: 199 MDCFPALQMHTDWVRDVAWAPN----------------LGLPKSTIASASEDGKVIIWTV 242
            +C   L+ H   V  ++WAP                  G P   + S S D  + +W V
Sbjct: 175 KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 234

Query: 243 AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286
           +          L      V  V +   G  +     +  + +W+
Sbjct: 235 S---TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 275

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.4 bits (191), Expect = 4e-17
 Identities = 39/310 (12%), Positives = 83/310 (26%), Gaps = 36/310 (11%)

Query: 9   GHEDTVHDVAMDYYGKRLATASSDYSIKI---------IGVGNNTSQHLAKLSGHKGAVW 59
            H+  +  V+         + S D  +K+              + S  + K   H   V 
Sbjct: 12  AHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69

Query: 60  EVAWAHPKFGSILASCSFDGTVIIWKEGNS-------NEWIKDHVFEDHKSSVNSIDWAP 112
           +          ++A+ SF G ++ ++            E +     +  K S  ++ W  
Sbjct: 70  QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129

Query: 113 HELGLC---LACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS 169
               L    L      G   ++          S      P      +      P     S
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189

Query: 170 GFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIA 229
             +     + +G  + TV++ +L       +     Q       +   +       S +A
Sbjct: 190 VDISERGLIATGFNNGTVQISELSTLRPLYNFES--QHSMINNSNSIRSVKFSPQGSLLA 247

Query: 230 SASEDGKVIIWTV-------------AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVA 276
            A +       T+                             + V  +S++ +G  L  A
Sbjct: 248 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA 307

Query: 277 DGNNNVTLWE 286
             +  +  W+
Sbjct: 308 GWDGKLRFWD 317

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 2e-07
 Identities = 33/246 (13%), Positives = 65/246 (26%), Gaps = 25/246 (10%)

Query: 43  NTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHK 102
                +            V  +      ++A+   +GTV I +                 
Sbjct: 172 ELQGTVESPMTPSQFATSVDISE---RGLIATGFNNGTVQISELSTLRPLYNFESQHSMI 228

Query: 103 SSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTA 162
           ++ NSI          L   + D N        +  +       + P   +  S      
Sbjct: 229 NNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH 288

Query: 163 PGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLG 222
              ++   F D  + LCS G D  ++ W +       +    L MH D +        + 
Sbjct: 289 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK----ERITTLNMHCDDIEIEEDILAVD 344

Query: 223 LPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNV 282
               ++A         ++ V      W   +  D                L     + ++
Sbjct: 345 EHGDSLAEPG------VFDVKFLKKGWRSGMGAD------------LNESLCCVCLDRSI 386

Query: 283 TLWEEA 288
             + EA
Sbjct: 387 RWFREA 392

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 19/112 (16%), Positives = 32/112 (28%), Gaps = 21/112 (18%)

Query: 141 TSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNG----- 195
           T+   +AH   + SVS   S                   S   D  +KVW          
Sbjct: 6   TANAGKAHDADIFSVSACNSF----------------TVSCSGDGYLKVWDNKLLDNENP 49

Query: 196 IWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGD 247
             K       +     V  +            +A+ S  G ++ + + RE +
Sbjct: 50  KDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDE 101

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.8 bits (169), Expect = 3e-14
 Identities = 40/192 (20%), Positives = 65/192 (33%), Gaps = 17/192 (8%)

Query: 59  WEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIK----DHVFEDHKSSVNSIDWAPHE 114
                  P  G  +A+ S D  V +W         +    +     HK SV S+ +    
Sbjct: 207 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD- 265

Query: 115 LGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDP 174
            G  +  GS D ++ ++  +       S+   +    VT +         A   +     
Sbjct: 266 -GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND---- 320

Query: 175 VQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPK--STIASAS 232
            + + SG  D  V  W   +G    +    LQ H + V  VA A    L    +  A+ S
Sbjct: 321 -EYILSGSKDRGVLFWDKKSG----NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 375

Query: 233 EDGKVIIWTVAR 244
            D K  IW   +
Sbjct: 376 GDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.2 bits (144), Expect = 5e-11
 Identities = 35/197 (17%), Positives = 66/197 (33%), Gaps = 29/197 (14%)

Query: 10  HEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQH-----LAKLSGHKGAVWEVAWA 64
            +           GK +A  S D ++++                   +GHK +V+ V + 
Sbjct: 204 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT 263

Query: 65  HPKFGSILASCSFDGTVIIWKEGNSNE---------WIKDHVFEDHKSSVNSIDWAPHEL 115
               G  + S S D +V +W   N+N             +  +  HK  V S+    +  
Sbjct: 264 RD--GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN-- 319

Query: 116 GLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPV 175
              +  GS D  +  +  ++    +   + Q H   V SV+ A  ++             
Sbjct: 320 DEYILSGSKDRGVLFWDKKS---GNPLLMLQGHRNSVISVAVANGSS--------LGPEY 368

Query: 176 QKLCSGGCDNTVKVWKL 192
               +G  D   ++WK 
Sbjct: 369 NVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.0 bits (141), Expect = 1e-10
 Identities = 51/300 (17%), Positives = 85/300 (28%), Gaps = 54/300 (18%)

Query: 8   TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPK 67
              +  +  V     GK LAT + D  I+         ++   +   +G   ++      
Sbjct: 118 PSSDLYIRSVCFSPDGKFLATGAEDRLIR-----IWDIENRKIVMILQGHEQDIYSLDYF 172

Query: 68  FGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGN 127
                         +   +  + +       ED      +        G  +A GS D  
Sbjct: 173 PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG----VTTVAVSPGDGKYIAAGSLDRA 228

Query: 128 ISVFTARADGGWDT----SRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC 183
           + V+ +      +     +     H   V SV +                  Q + SG  
Sbjct: 229 VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG--------------QSVVSGSL 274

Query: 184 DNTVKVWKLYNG--------IWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG 235
           D +VK+W L N              C      H D+V  VA   N       I S S+D 
Sbjct: 275 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN----DEYILSGSKDR 330

Query: 236 KVIIWTVAREGDQWEGKVLHDFK---------TPVYRVSWSLTGNILAVADGNNNVTLWE 286
            V+ W      D+  G  L   +               S     N+ A   G+    +W+
Sbjct: 331 GVLFW------DKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.5 bits (137), Expect = 5e-10
 Identities = 34/157 (21%), Positives = 56/157 (35%), Gaps = 27/157 (17%)

Query: 2   PPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQ----------HLAKL 51
              +  TGH+D+V+ V     G+ + + S D S+K+  + N  ++               
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 304

Query: 52  SGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWA 111
            GHK  V  VA         + S S D  V+ W   +        + + H++SV S+  A
Sbjct: 305 IGHKDFVLSVATTQN--DEYILSGSKDRGVLFW---DKKSGNPLLMLQGHRNSVISVAVA 359

Query: 112 P----HELGLCLACGSSDGNISVFTARADGGWDTSRI 144
                       A GS D    +        W   +I
Sbjct: 360 NGSSLGPEYNVFATGSGDCKARI--------WKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.2 bits (131), Expect = 3e-09
 Identities = 44/290 (15%), Positives = 78/290 (26%), Gaps = 25/290 (8%)

Query: 9   GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKF 68
            H   V  V     G+ LAT   + + ++  V  +    +A+LS    A  +    +   
Sbjct: 60  DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRV--SDGSLVARLSDDSAANKDPENLNT-- 114

Query: 69  GSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNI 128
            S   S       + +                    + +        G      S D   
Sbjct: 115 -SSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP 173

Query: 129 SVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVK 188
           S     +  G  T RI        +             V  G     + + +G  D  V+
Sbjct: 174 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD---GKYIAAGSLDRAVR 230

Query: 189 VWKLYNGIWKMDCFPALQM---HTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE 245
           VW    G          +    H D V  V +  +      ++ S S D  V +W +   
Sbjct: 231 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD----GQSVVSGSLDRSVKLWNLQNA 286

Query: 246 GDQ---------WEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286
            ++                  K  V  V+ +     +     +  V  W+
Sbjct: 287 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 336

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.5 bits (168), Expect = 3e-14
 Identities = 36/278 (12%), Positives = 80/278 (28%), Gaps = 11/278 (3%)

Query: 8   TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPK 67
           +   + +   A +    ++A   +++ + I     N    + +L  H G V  V WA   
Sbjct: 4   SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD- 62

Query: 68  FGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGN 127
             + + +C  D    +W            +   ++++         +     +       
Sbjct: 63  -SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 121

Query: 128 ISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTV 187
                      W    I +     V S+ W P++   A     F   +        +   
Sbjct: 122 CYFEQEN--DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERP 179

Query: 188 KVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGD 247
                 + +   +          WV  V ++ N     S +A  S D  V +    +   
Sbjct: 180 APTPWGSKMPFGELMFESSSSCGWVHGVCFSAN----GSRVAWVSHDSTVCLADADK--- 232

Query: 248 QWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLW 285
           +     L     P+  V++    +++A       V   
Sbjct: 233 KMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFT 270

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.5 bits (90), Expect = 3e-04
 Identities = 29/193 (15%), Positives = 47/193 (24%), Gaps = 30/193 (15%)

Query: 50  KLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSID 109
           + S   G V  V ++     S +A  S D TV +                          
Sbjct: 196 ESSSSCGWVHGVCFSANG--SRVAWVSHDSTVCLADADKKMAVATLASETLPLL-----A 248

Query: 110 WAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS 169
                    +A G  D    +FT      +D++   +    G   V    S         
Sbjct: 249 VTFITESSLVAAGH-DCFPVLFT------YDSAA-GKLSFGGRLDVPKQSSQRGLTARER 300

Query: 170 GFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIA 229
                 +    G       +  L               H + V  ++         S   
Sbjct: 301 FQNLDKKASSEGSAAAGAGLDSL---------------HKNSVSQISVLSGGKAKCSQFC 345

Query: 230 SASEDGKVIIWTV 242
           +   DG + IW V
Sbjct: 346 TTGMDGGMSIWDV 358

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.2 bits (165), Expect = 1e-13
 Identities = 43/286 (15%), Positives = 83/286 (29%), Gaps = 32/286 (11%)

Query: 1   MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWE 60
           M  ++   GH   ++ +      + L +AS D  + I      T+  +  +      V  
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDS--YTTNKVHAIPLRSSWVMT 102

Query: 61  VAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLA 120
            A+A           +  G   I    N      +       +           L     
Sbjct: 103 CAYAPSG-----NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQI 157

Query: 121 CGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCS 180
             SS            G   T+       V   S++                       S
Sbjct: 158 VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF----------------VS 201

Query: 181 GGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIW 240
           G CD + K+W +  G     C      H   +  + + PN     +  A+ S+D    ++
Sbjct: 202 GACDASAKLWDVREG----MCRQTFTGHESDINAICFFPN----GNAFATGSDDATCRLF 253

Query: 241 TVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286
            +  + +        +    +  VS+S +G +L     + N  +W+
Sbjct: 254 DLRADQELMTYSH-DNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.7 bits (161), Expect = 3e-13
 Identities = 22/129 (17%), Positives = 51/129 (39%), Gaps = 7/129 (5%)

Query: 3   PQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVA 62
            ++  TGHE  ++ +     G   AT S D + ++  +  +              +  V+
Sbjct: 218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277

Query: 63  WAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACG 122
           ++    G +L +   D    +W   ++ +  +  V   H + V+ +       G+ +A G
Sbjct: 278 FSKS--GRLLLAGYDDFNCNVW---DALKADRAGVLAGHDNRVSCLGVTDD--GMAVATG 330

Query: 123 SSDGNISVF 131
           S D  + ++
Sbjct: 331 SWDSFLKIW 339

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.3 bits (139), Expect = 2e-10
 Identities = 35/333 (10%), Positives = 76/333 (22%), Gaps = 58/333 (17%)

Query: 1   MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNT-SQHLAKLSGHKGAVW 59
           M   +IE   +D + D+ +      L   S D S+ +        +  L +   +K  + 
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60

Query: 60  EVAWAHPKFGSILASCSFDGTVIIWKEG-------------------------------- 87
              +       I         + +   G                                
Sbjct: 61  CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW 120

Query: 88  -----------NSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARAD 136
                        +  I       + + V +  +        L  G ++  +  F  R  
Sbjct: 121 DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWF--RLP 178

Query: 137 GGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGI 196
              D +   +   +       A             +D    +                  
Sbjct: 179 LCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238

Query: 197 WKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHD 256
                          V  + ++P        + +A  DG +  W      +    K + +
Sbjct: 239 RCHRLNLKDTNLAYPVNSIEFSPR----HKFLYTAGSDGIISCW------NLQTRKKIKN 288

Query: 257 FKT--PVYRVSWSLTGNILAVADGNNNVTLWEE 287
           F        V  + + NIL +A  ++       
Sbjct: 289 FAKFNEDSVVKIACSDNILCLATSDDTFKTNAA 321

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 7e-10
 Identities = 50/294 (17%), Positives = 90/294 (30%), Gaps = 25/294 (8%)

Query: 3   PQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVA 62
             K+  GH+D V    + + G R+ + S D ++K+      T + L  L GH G VW   
Sbjct: 8   SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSA--VTGKCLRTLVGHTGGVWSSQ 64

Query: 63  W-----AHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGL 117
                         L   + +    I         ++     + +    S D       +
Sbjct: 65  MRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI 124

Query: 118 CLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQK 177
                       V   R         +  A+   V        T    L G        +
Sbjct: 125 ETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ 184

Query: 178 -----LCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASAS 232
                + SG  D +++VW +       +C   L  H      +    N+      + S +
Sbjct: 185 FDGIHVVSGSLDTSIRVWDV----ETGNCIHTLTGHQSLTSGMELKDNI------LVSGN 234

Query: 233 EDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286
            D  V IW +         +  +  ++ V  + ++    I +  DG   V LW+
Sbjct: 235 ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDG--TVKLWD 286

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 6e-09
 Identities = 40/245 (16%), Positives = 81/245 (33%), Gaps = 38/245 (15%)

Query: 1   MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWE 60
              Q +            + Y G+R+ + + D+ +K+      T   L  L GH   V+ 
Sbjct: 125 ETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET--CLHTLQGHTNRVYS 182

Query: 61  VAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLA 120
           + +     G  + S S D ++ +W   +       H    H+S  + ++   +     L 
Sbjct: 183 LQF----DGIHVVSGSLDTSIRVW---DVETGNCIHTLTGHQSLTSGMELKDN----ILV 231

Query: 121 CGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCS 180
            G++D  + ++  +      T +    H   VT + +  +                   +
Sbjct: 232 SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFV----------------IT 275

Query: 181 GGCDNTVKVWKLYNG-IWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG---- 235
              D TVK+W L  G   +             V  +  +      K   A  S +G    
Sbjct: 276 SSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT----KLVCAVGSRNGTEET 331

Query: 236 KVIIW 240
           K+++ 
Sbjct: 332 KLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 2e-06
 Identities = 43/230 (18%), Positives = 76/230 (33%), Gaps = 47/230 (20%)

Query: 59  WEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLC 118
                     G  + S ++D  V +W   +       H  + H + V S+ +     G+ 
Sbjct: 137 VAAVRCVQYDGRRVVSGAYDFMVKVW---DPETETCLHTLQGHTNRVYSLQFD----GIH 189

Query: 119 LACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKL 178
           +  GS D +I V+        +       H    + +    +                 L
Sbjct: 190 VVSGSLDTSIRVWDVE---TGNCIHTLTGHQSLTSGMELKDNI----------------L 230

Query: 179 CSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVI 238
            SG  D+TVK+W +  G            H   V  + +  N       + ++S+DG V 
Sbjct: 231 VSGNADSTVKIWDIKTGQCLQTLQGP-NKHQSAVTCLQFNKNF------VITSSDDGTVK 283

Query: 239 IWTVAREGDQWEGKVLHDFKT--------PVYRVSWSLTGNILAVADGNN 280
           +W      D   G+ + +  T         V+R+  S T  + AV   N 
Sbjct: 284 LW------DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG 327

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.1 bits (133), Expect = 9e-10
 Identities = 35/296 (11%), Positives = 68/296 (22%), Gaps = 19/296 (6%)

Query: 4   QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAW 63
            ++  GH   +  ++    GK L +A ++  I    +    S        H   +  +  
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNR-VFPDVHATMITGIKT 63

Query: 64  AHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGS 123
                   L + S+D  + +   G S       V     S    +  +        AC  
Sbjct: 64  TSKGD---LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 120

Query: 124 SDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC 183
                S            S                  +       SG      K      
Sbjct: 121 HIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA 180

Query: 184 DNTVKVWKLYNGIWK--------------MDCFPALQMHTDWVRDVAWAPNLGLPKSTIA 229
           + T   +                       +   A      +        +       +A
Sbjct: 181 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA 240

Query: 230 SASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLW 285
           + S D  VI+W +  +       +              L    +  A  ++N+  W
Sbjct: 241 TGSLDNSVIVWNM-NKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (131), Expect = 2e-09
 Identities = 28/297 (9%), Positives = 67/297 (22%), Gaps = 30/297 (10%)

Query: 9   GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQH---LAKLSGHKGAVWEVAWAH 65
            H + V  V +    + + T      +K+  + +  ++              +       
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 66  PKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125
              G  L       T+ IW        IK  +     +          ++        + 
Sbjct: 108 D--GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165

Query: 126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDN 185
               +        +       +        +   +      V S  L   ++L      +
Sbjct: 166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS 225

Query: 186 TV----------------KVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIA 229
            +                +   +            L +H   V  + +A           
Sbjct: 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYC----GKWFV 281

Query: 230 SASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286
           S  +D  +  W                  + V     S+    +    G+   T++E
Sbjct: 282 STGKDNLLNAWRT----PYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 4e-05
 Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 9/67 (13%)

Query: 176 QKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG 235
           +   S G DN +  W+   G             +  V     + +       I + S D 
Sbjct: 278 KWFVSTGKDNLLNAWRTPYG-----ASIFQSKESSSVLSCDISVD----DKYIVTGSGDK 328

Query: 236 KVIIWTV 242
           K  ++ V
Sbjct: 329 KATVYEV 335

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 51.4 bits (121), Expect = 4e-08
 Identities = 24/257 (9%), Positives = 56/257 (21%), Gaps = 33/257 (12%)

Query: 1   MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWE 60
             P  IE   E  + D  +    + +A        +  G                 A   
Sbjct: 117 GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT 176

Query: 61  VAWA-----HPKFGSILASCSFDGTVIIW----KEGNSNEWIKDHVFEDHKSSVNSIDWA 111
                           L   S+              +     K  V      S N     
Sbjct: 177 ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLV 236

Query: 112 PHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGF 171
           P  +         +  +   ++  +      R+       +   S        A      
Sbjct: 237 PRSMTSEAGEYDLND-MYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAY----- 290

Query: 172 LDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASA 231
                          +  + +            +    + + D+  + +    + T+   
Sbjct: 291 ------YQGAPEKGVLLKYDVKTR--------KVTEVKNNLTDLRLSAD----RKTVMVR 332

Query: 232 SEDGKVIIWTVAREGDQ 248
            +DGK+  + + +  D+
Sbjct: 333 KDDGKIYTFPLEKPEDE 349

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 45.6 bits (106), Expect = 3e-06
 Identities = 19/284 (6%), Positives = 55/284 (19%), Gaps = 19/284 (6%)

Query: 6   IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAH 65
           ++      +  V      K      +      +G+ +  +    K   + G V+ +    
Sbjct: 37  LKVPEPLRIRYVRRGGDTKVAFIHGTR-EGDFLGIYDYRTGKAEKFEENLGNVFAMGVDR 95

Query: 66  PKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125
                                 +        +    ++ +     + +   +        
Sbjct: 96  NGKF-----AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKH 150

Query: 126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDN 185
           G    +  +A   +D             S  +AP+               + L      +
Sbjct: 151 GETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDA----------DSKNLYYLSYRS 200

Query: 186 TVKVWKLYNG---IWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV 242
                           +     + +           P     ++     ++  K      
Sbjct: 201 LDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPIN 260

Query: 243 AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286
              GD      L                     A     +  ++
Sbjct: 261 VDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYD 304

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.2 bits (97), Expect = 4e-05
 Identities = 21/237 (8%), Positives = 60/237 (25%), Gaps = 20/237 (8%)

Query: 51  LSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDW 110
               +  + +   +              G    +     + +  +       ++ NS D+
Sbjct: 123 ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDY 182

Query: 111 APHEL--GLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG 168
           AP        L   S                + S    + P  +  +  +P+        
Sbjct: 183 APAFDADSKNLYYLSYRSLDPSPDRV---VLNFSFEVVSKPFVIPLIPGSPNPT------ 233

Query: 169 SGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTI 228
              +       +G  D      +          +  +      +   +   + G   +  
Sbjct: 234 -KLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVH-GEFAAYY 291

Query: 229 ASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLW 285
             A E G ++ + V       + + + + K  +  +  S     + V   +  +  +
Sbjct: 292 QGAPEKGVLLKYDV-------KTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTF 341

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.9 bits (117), Expect = 1e-07
 Identities = 36/307 (11%), Positives = 69/307 (22%), Gaps = 34/307 (11%)

Query: 13  TVHDVAMDYYGKRLATASSD-YSIKIIGVGNNTSQHLAKLSGHKG-AVWEVAWAHPKFGS 70
               ++ D     +A        ++ +  G++    + + +GH    V  V ++  K   
Sbjct: 19  FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ 78

Query: 71  ILASCSFDGTVIIWKEGNSNEWIK-----DHVFEDHKSSVNSIDWAPHELGLCLACGSSD 125
            L S    G VI+W      E           F+     ++ I W      LC+     D
Sbjct: 79  YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD 138

Query: 126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSG---- 181
                 +  +                       P  +         +             
Sbjct: 139 NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD 198

Query: 182 ---------------------GCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPN 220
                                         K+     K   F                  
Sbjct: 199 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 258

Query: 221 LGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGN-ILAVADGN 279
             L     A+   D  + +W V       +   L   +    +V    TGN  +     +
Sbjct: 259 SWLDSQKFATVGADATIRVWDV-TTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 317

Query: 280 NNVTLWE 286
             +  +E
Sbjct: 318 GTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 8e-06
 Identities = 23/163 (14%), Positives = 52/163 (31%), Gaps = 8/163 (4%)

Query: 52  SGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSS-VNSIDW 110
           S  +     +++  P   + +A        +   +   ++      F  H SS V ++ +
Sbjct: 14  STQRNFTTHLSY-DPT-TNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKF 71

Query: 111 APHELGLCLACGSSDGNISVFTARADGGWDT-----SRIDQAHPVGVTSVSWAPSTAPGA 165
           +P +    L  G   G + V+    D   ++         Q     ++ +SW        
Sbjct: 72  SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLC 131

Query: 166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMH 208
           +VG G  +    +     ++  +V      I       +  M 
Sbjct: 132 VVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMR 174

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (92), Expect = 1e-04
 Identities = 12/131 (9%), Positives = 32/131 (24%), Gaps = 2/131 (1%)

Query: 1   MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWE 60
               +        V DV                       G +           +     
Sbjct: 195 SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGG 254

Query: 61  VAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLA 120
           +           A+   D T+ +W +  +++ ++    +  +     +       G  + 
Sbjct: 255 IFALSWLDSQKFATVGADATIRVW-DVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR-II 312

Query: 121 CGSSDGNISVF 131
             S DG ++ +
Sbjct: 313 SLSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 2e-04
 Identities = 12/85 (14%), Positives = 28/85 (32%), Gaps = 1/85 (1%)

Query: 1   MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWE 60
           +   + +                ++ AT  +D +I++  V  +       L   +    +
Sbjct: 241 LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 300

Query: 61  VAWAHPKFGSILASCSFDGTVIIWK 85
           V          + S S DGT+  ++
Sbjct: 301 VGVVATG-NGRIISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 8e-04
 Identities = 35/242 (14%), Positives = 75/242 (30%), Gaps = 21/242 (8%)

Query: 1   MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWE 60
           +  +         + D++ D+ G+RL           + +  ++   L ++SGH   +  
Sbjct: 105 VNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINA 164

Query: 61  VAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLA 120
                        +   DG+V+ ++         D       S V  ++++P      + 
Sbjct: 165 CHL-KQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVIT 223

Query: 121 CGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCS 180
            GS            +         +    G+ ++SW  S               QK  +
Sbjct: 224 VGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDS---------------QKFAT 268

Query: 181 GGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIW 240
            G D T++VW +        C     +    + +      +      I S S DG +  +
Sbjct: 269 VGADATIRVWDVTTS----KCVQKWTLDKQQLGNQQVGV-VATGNGRIISLSLDGTLNFY 323

Query: 241 TV 242
            +
Sbjct: 324 EL 325

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 3e-07
 Identities = 41/302 (13%), Positives = 95/302 (31%), Gaps = 33/302 (10%)

Query: 4   QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAW 63
           Q+I    E +     + Y  +++ +   D +IKI     NT +    L+GH G+V  + +
Sbjct: 6   QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDK--NTLECKRILTGHTGSVLCLQY 63

Query: 64  AHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCL---- 119
                 +  +  +     +   E  +            + +   +     +  + +    
Sbjct: 64  DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 123

Query: 120 --ACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPV-- 175
                +    +    A  +      +   +     T   W  ST       +G    +  
Sbjct: 124 SPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC 183

Query: 176 -----QKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIAS 230
                + + SG  DNT+++W +  G          ++      D             I S
Sbjct: 184 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR----------IVS 233

Query: 231 ASEDGKVIIWTVAREGDQWEGKVLHDFKT------PVYRVSWSLTGNILAVADGNNNVTL 284
            + DGK+ +W +    D          +T       V+R+ +      +  +  ++ + +
Sbjct: 234 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILI 291

Query: 285 WE 286
           W+
Sbjct: 292 WD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 28/266 (10%), Positives = 64/266 (24%), Gaps = 42/266 (15%)

Query: 41  GNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFED 100
           G ++ Q +   S     V+ + +        + S   D T+ IW   + N      +   
Sbjct: 1   GRHSLQRIHCRSETSKGVYCLQYD----DQKIVSGLRDNTIKIW---DKNTLECKRILTG 53

Query: 101 HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPS 160
           H  SV  + +    +    +  +            +                  +     
Sbjct: 54  HTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSK 113

Query: 161 TAPGALVGSGFLDPVQK--------------------LCSGGCDNTVKVWKLYNGIWKMD 200
               A+        +                      + S   D T+KVW         +
Sbjct: 114 DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTC----E 169

Query: 201 CFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTP 260
               L  H   +  + +   L      + S S D  + +W +     +    +       
Sbjct: 170 FVRTLNGHKRGIACLQYRDRL------VVSGSSDNTIRLWDI-----ECGACLRVLEGHE 218

Query: 261 VYRVSWSLTGNILAVADGNNNVTLWE 286
                       +     +  + +W+
Sbjct: 219 ELVRCIRFDNKRIVSGAYDGKIKVWD 244

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 5e-07
 Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 9/159 (5%)

Query: 1   MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWE 60
           +P +    GH  +V    + +    + T + D  I++        + L +LSGH G VW 
Sbjct: 2   VPQRTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDS--INKKFLLQLSGHDGGVWA 58

Query: 61  VAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLA 120
           + +AH   G IL S S   T    +  +  +    HVFE H S+V  +D   ++    + 
Sbjct: 59  LKYAH---GGILVSGS---TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIV 112

Query: 121 CGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAP 159
            GS D  + V+    +        +  +P+   +    P
Sbjct: 113 TGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP 151

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 3e-04
 Identities = 19/182 (10%), Positives = 37/182 (20%), Gaps = 12/182 (6%)

Query: 59  WEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLC 118
             +          L   S     I     +           D    +  ++       L 
Sbjct: 181 NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ 240

Query: 119 LACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKL 178
                                D S             S   S     L           +
Sbjct: 241 GHTALVGLLRLSDKFLVSAAADGSIRGWDAND----YSRKFSYHHTNLSAITTFYVSDNI 296

Query: 179 CSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVI 238
              G +N   ++ L +G              D +  V +        + +A+  +DG+  
Sbjct: 297 LVSGSENQFNIYNLRSGKLVHANILK---DADQIWSVNFKGK-----TLVAAVEKDGQSF 348

Query: 239 IW 240
           + 
Sbjct: 349 LE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 26/174 (14%), Positives = 52/174 (29%), Gaps = 24/174 (13%)

Query: 49  AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSI 108
             L GH  +V         +   + + + D  + ++   +S           H   V ++
Sbjct: 6   TTLRGHMTSVITCLQFEDNY---VITGADDKMIRVY---DSINKKFLLQLSGHDGGVWAL 59

Query: 109 DWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG 168
            +A    G  L  GS+D  + V+  +            +    +  V +           
Sbjct: 60  KYAH---GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY----------- 105

Query: 169 SGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLG 222
                 ++ + +G  DNT+ VWKL       D          +         +G
Sbjct: 106 ----KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG 155

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.1 bits (107), Expect = 2e-06
 Identities = 39/294 (13%), Positives = 85/294 (28%), Gaps = 25/294 (8%)

Query: 3   PQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVA 62
             K  +GH   +  + ++     L + S D  I      +           H   +  + 
Sbjct: 5   VLKTISGHNKGITALTVN----PLISGSYDGRIMEWSSSS-------MHQDHSNLIVSLD 53

Query: 63  WAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPH--------- 113
            +  +  S ++         I K    ++        D  ++V + D             
Sbjct: 54  NSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDI 113

Query: 114 -ELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG-ALVGSGF 171
            +     + GS+      + A      +T ++ +   + V+     P  A    +  S  
Sbjct: 114 IKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPS 173

Query: 172 LDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASA 231
              +      G      +        +     +      W      A    + +  +A+ 
Sbjct: 174 ETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG 233

Query: 232 SEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLW 285
           S D  + I++V R       K L+  K  V  + W  T + L  +  +  +  W
Sbjct: 234 SLDTNIFIYSVKRPMKII--KALNAHKDGVNNLLWE-TPSTLVSSGADACIKRW 284

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.3 bits (97), Expect = 3e-05
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 8/64 (12%)

Query: 179 CSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVI 238
            +G  D  + ++ +      M    AL  H D V ++ W        ST+ S+  D  + 
Sbjct: 231 ATGSLDTNIFIYSVKRP---MKIIKALNAHKDGVNNLLWETP-----STLVSSGADACIK 282

Query: 239 IWTV 242
            W V
Sbjct: 283 RWNV 286

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.7 bits (106), Expect = 3e-06
 Identities = 34/298 (11%), Positives = 67/298 (22%), Gaps = 31/298 (10%)

Query: 13  TVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSIL 72
           T   +     G ++   +   S+  + VG+ T   +   + H         +    G   
Sbjct: 19  TAVVLGNTPAGDKIQYCNGT-SVYTVPVGSLTDTEI--YTEHSHQTTVAKTSP--SGYYC 73

Query: 73  ASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFT 132
           AS    G V IW    +   +K  +        +    +  +    +  G          
Sbjct: 74  ASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLF 133

Query: 133 ARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKL 192
                  + +   +A        S       G+   +  +                 +  
Sbjct: 134 DTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVH 193

Query: 193 YNGIWKMDCFPALQMHTDWVR------------------------DVAWAPNLGLPKSTI 228
                      A       +                            +        + I
Sbjct: 194 SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI 253

Query: 229 ASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE 286
           ASAS D  + IW VA    +    V    +     + W+     L     N  +    
Sbjct: 254 ASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT--KQALVSISANGFINFVN 309

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.9 bits (100), Expect = 2e-05
 Identities = 33/264 (12%), Positives = 70/264 (26%), Gaps = 23/264 (8%)

Query: 4   QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKL---SGHKGAVWE 60
             ++TG+   VH   +   G+ L     D  + +I +       +A++   S  +     
Sbjct: 56  TVLDTGYA--VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS 113

Query: 61  VAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLA 120
                 +    +A   +    +I    +        +      + +  ++ P      + 
Sbjct: 114 KMEG-WEDKYAIAGAYWPPQYVIM---DGETLEPKKIQSTRGMTYDEQEYHPEPRVAAIL 169

Query: 121 CGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCS 180
             S      +   +  G          + +  T +S          +  G LD   +   
Sbjct: 170 -ASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS------AERFLHDGGLDGSHRYFI 222

Query: 181 GGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKS---TIASASEDGKV 237
              +   K+  +     K     A++             N   P        S   D  V
Sbjct: 223 TAANARNKLVVID---TKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSV 279

Query: 238 -IIWTVAREGDQWEGKVLHDFKTP 260
            +I T          K+L  F   
Sbjct: 280 ALIGTDPEGHPDNAWKILDSFPAL 303

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 32/266 (12%), Positives = 77/266 (28%), Gaps = 16/266 (6%)

Query: 4   QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKL---SGHKGAVWE 60
           + I+TG+   VH   M   G+ L     D  I +I +       +A++      +     
Sbjct: 56  KVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESS 113

Query: 61  VAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLA 120
                 +    +A   +     I    +        +      +V++  +   E  +   
Sbjct: 114 KFK-GYEDRYTIAGAYWPPQFAIM---DGETLEPKQIVSTRGMTVDTQTY-HPEPRVAAI 168

Query: 121 CGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCS 180
             S +    +   +  G            + VTS+           +  G  D   +   
Sbjct: 169 IASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI------GAAPFLADGGWDSSHRYFM 222

Query: 181 GGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIW 240
              +N+ KV  + +   ++     +       R   +      P  + +   +    +I 
Sbjct: 223 TAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIG 282

Query: 241 TVAREGDQWEGKVLHDFKTPVYRVSW 266
           T  +   Q+  K + + +       +
Sbjct: 283 TDPKNHPQYAWKKVAELQGQGGGSLF 308

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 33/302 (10%), Positives = 70/302 (23%), Gaps = 35/302 (11%)

Query: 4   QKIETGHEDTVHDVAMDYYGKRL-ATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVA 62
           +      +       M    +      +    I  I +    +   A LS   G V    
Sbjct: 32  KSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSM 91

Query: 63  W--AHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLA 120
           +  A    G  + +       +          ++     D       +   P    + L 
Sbjct: 92  YSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE-AKPVRTFPMPRQVYLM 150

Query: 121 CGSSDGNISVFTAR-----ADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG----- 170
             + DG++ V            G  T  +   +       +                   
Sbjct: 151 RAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 210

Query: 171 -----FLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPK 225
                F D  Q   +           L  G      F      T+       +P      
Sbjct: 211 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF---ADLTELYFTGLRSP----KD 263

Query: 226 STIASASEDGKVIIWTVAREGDQWEGKVLHDFKTP--VYRVSWSLTGNILAVADGNNNVT 283
                     ++  +      D  + K++         Y V++   G+ L +    N++ 
Sbjct: 264 PNQIYGV-LNRLAKY------DLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLA 316

Query: 284 LW 285
           ++
Sbjct: 317 VF 318

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 21/265 (7%), Positives = 55/265 (20%), Gaps = 15/265 (5%)

Query: 1   MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWE 60
                +      +++  A+   GK +    +              +     +        
Sbjct: 78  ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP 137

Query: 61  VAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDH-VFEDHKSSVNSIDWAPHELGLCL 119
           V          L   + DG++ +         +K             +         L  
Sbjct: 138 VRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYF 197

Query: 120 ACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLC 179
               S  +            D  +      +    +S    T          L  +    
Sbjct: 198 WPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTG 257

Query: 180 SGGCDNTVKVWKLYNGIWKMDC----FPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG 235
                +  +++ + N + K D                  VA+          +       
Sbjct: 258 LRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKK----GDKLYLGGTFN 313

Query: 236 KVIIWTVAREGDQWEGKVLHDFKTP 260
            + ++           + + + K P
Sbjct: 314 DLAVFNPDT------LEKVKNIKLP 332

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 23/261 (8%), Positives = 58/261 (22%), Gaps = 14/261 (5%)

Query: 26  LATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK 85
           +   +    + +I         +  ++           A P      A+ +   +++   
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVA-PGGRIAYATVNKSESLVKID 62

Query: 86  EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWD----- 140
                   +  +    +   +    A    G  LA   S   + +               
Sbjct: 63  LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122

Query: 141 ---TSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIW 197
              + R     P  +T ++WA       L G G    V    +G       +       +
Sbjct: 123 ETLSRRKAFEAPRQITMLAWARD--GSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETY 180

Query: 198 K-MDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHD 256
              D       H                       +    ++   +  E  +   + +  
Sbjct: 181 AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL--ETGEMAMREVRI 238

Query: 257 FKTPVYRVSWSLTGNILAVAD 277
                +  + +        A 
Sbjct: 239 MDVFYFSTAVNPAKTRAFGAY 259

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	288
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.98
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.87
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.86
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.83
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.83
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.83
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.81
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.78
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.76
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.74
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.69
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.65
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.63
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.5
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.41
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.36
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.34
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.32
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.13
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.09
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.02
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.02
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.92
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.91
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.9
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.89
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.85
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.77
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.69
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.36
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.36
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.31
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.79
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.64
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.64
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.63
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.38
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.29
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.2
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.66
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	95.11
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	92.36
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	92.29
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	92.27
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	81.07

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.8e-40  Score=276.86  Aligned_cols=263  Identities=23%  Similarity=0.360  Sum_probs=211.9

Q ss_pred             CCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCC---------------
Q 036510            3 PQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPK---------------   67 (288)
Q Consensus         3 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~---------------   67 (288)
                      ++..+.||++.|++++|+|++++|+||+.|++|+|||+..  ++.+.++.+|...|++++|+++.               
T Consensus         9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~--~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~   86 (317)
T d1vyhc1           9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET--GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW   86 (317)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT--CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred             ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC--CCEEEEEeCCCCcEEEEeeecccccccccccccccccc
Confidence            3445779999999999999999999999999999999853  35677788888888887776531               


Q ss_pred             -------------------------CCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEE
Q 036510           68 -------------------------FGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACG  122 (288)
Q Consensus        68 -------------------------~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg  122 (288)
                                               ++..+++++.|+.+++||+.++.   ....+..|...+.+++|+|+  +.++++|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~l~~~  161 (317)
T d1vyhc1          87 DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY---CVKTFTGHREWVRMVRPNQD--GTLIASC  161 (317)
T ss_dssp             ETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC---EEEEEECCSSCEEEEEECTT--SSEEEEE
T ss_pred             cccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccce---eeeEEccCCCcceeeecccC--CCEEEEE
Confidence                                     14567888899999999987655   34567789999999999997  6789999


Q ss_pred             eCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCcee------cccccCCCceeEEeecCCcEEEEEEeCCc
Q 036510          123 SSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV------GSGFLDPVQKLCSGGCDNTVKVWKLYNGI  196 (288)
Q Consensus       123 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~------~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  196 (288)
                      +.|+.|++|+.+....   .....+|...+.++.|+|+.......      ......++.++++++.|+.|++||+.++ 
T Consensus       162 ~~d~~v~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~-  237 (317)
T d1vyhc1         162 SNDQTVRVWVVATKEC---KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-  237 (317)
T ss_dssp             ETTSCEEEEETTTCCE---EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-
T ss_pred             eCCCeEEEEeecccee---eEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC-
Confidence            9999999999986532   34456788899999999987432211      1112334567999999999999999876 


Q ss_pred             eeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEE
Q 036510          197 WKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVA  276 (288)
Q Consensus       197 ~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~  276 (288)
                         +++..+.+|...|.++.|+|++    .+|++|+.|+.|++||+...+   ....+..|.++|++++|+|++++|++|
T Consensus       238 ---~~~~~~~~~~~~v~~~~~~~~~----~~l~s~~~dg~i~iwd~~~~~---~~~~~~~h~~~V~~~~~s~~~~~l~s~  307 (317)
T d1vyhc1         238 ---MCLMTLVGHDNWVRGVLFHSGG----KFILSCADDKTLRVWDYKNKR---CMKTLNAHEHFVTSLDFHKTAPYVVTG  307 (317)
T ss_dssp             ---EEEEEEECCSSCEEEEEECSSS----SCEEEEETTTEEEEECCTTSC---CCEEEECCSSCEEEEEECSSSSCEEEE
T ss_pred             ---cEEEEEeCCCCCEEEEEECCCC----CEEEEEECCCeEEEEECCCCc---EEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence               4566778999999999999984    689999999999999987542   234566788899999999999999999


Q ss_pred             eCCCcEEEeE
Q 036510          277 DGNNNVTLWE  286 (288)
Q Consensus       277 ~~d~~v~~w~  286 (288)
                      +.|++|+|||
T Consensus       308 s~Dg~i~iWd  317 (317)
T d1vyhc1         308 SVDQTVKVWE  317 (317)
T ss_dssp             ETTSEEEEEC
T ss_pred             eCCCeEEEeC
Confidence            9999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-38  Score=270.82  Aligned_cols=253  Identities=15%  Similarity=0.210  Sum_probs=202.9

Q ss_pred             CCCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcE
Q 036510            2 PPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTV   81 (288)
Q Consensus         2 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v   81 (288)
                      .+++.+.||++.|++++|+|++++|+||+.|++|+|||+..  ++.+..+.+|...|.+++|+++  +.++++++.|+.+
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~--~~~~~~~~~~~~~v~~v~~~~~--~~~l~~~~~d~~i  121 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYT--TNKVHAIPLRSSWVMTCAYAPS--GNYVACGGLDNIC  121 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT--TEEEEEEECSCSCEEEEEECTT--SSEEEEEETTCCE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeeccc--ceeEEEEecccccEEeeEeecc--ceeeeeeccccee
Confidence            34566789999999999999999999999999999999853  4778899999999999999864  8999999999999


Q ss_pred             EEeecCCCCce-EEeE-----------------------------------------EeecCCCceeEEEeccCCCCeEE
Q 036510           82 IIWKEGNSNEW-IKDH-----------------------------------------VFEDHKSSVNSIDWAPHELGLCL  119 (288)
Q Consensus        82 ~iwd~~~~~~~-~~~~-----------------------------------------~~~~h~~~v~~l~~~p~~~~~~l  119 (288)
                      ++|+....... ....                                         ....+...+....+.+.  ..++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  199 (340)
T d1tbga_         122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD--TRLF  199 (340)
T ss_dssp             EEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTT--SSEE
T ss_pred             ecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccc--ccee
Confidence            99986432110 0000                                         11124445666666665  5678


Q ss_pred             EEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceee
Q 036510          120 ACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKM  199 (288)
Q Consensus       120 ~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  199 (288)
                      ++|+.|+.|++||++++.   ......+|...|.+++|+|++              .+|++|+.|+.|++||+...... 
T Consensus       200 ~~~~~d~~v~i~d~~~~~---~~~~~~~h~~~i~~v~~~p~~--------------~~l~s~s~d~~i~~~~~~~~~~~-  261 (340)
T d1tbga_         200 VSGACDASAKLWDVREGM---CRQTFTGHESDINAICFFPNG--------------NAFATGSDDATCRLFDLRADQEL-  261 (340)
T ss_dssp             EEEETTTEEEEEETTTTE---EEEEECCCSSCEEEEEECTTS--------------SEEEEEETTSCEEEEETTTTEEE-
T ss_pred             EEeecCceEEEEECCCCc---EEEEEeCCCCCeEEEEECCCC--------------CEEEEEeCCCeEEEEeecccccc-
Confidence            999999999999998653   334556899999999999987              78999999999999998765311 


Q ss_pred             eeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCC
Q 036510          200 DCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGN  279 (288)
Q Consensus       200 ~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d  279 (288)
                       .......|...|.++.|+|++    .+|++|+.|+.|++||+....   ....+.+|.++|++++|+|||++|++|+.|
T Consensus       262 -~~~~~~~~~~~i~~~~~s~~~----~~l~~g~~dg~i~iwd~~~~~---~~~~~~~H~~~V~~l~~s~d~~~l~s~s~D  333 (340)
T d1tbga_         262 -MTYSHDNIICGITSVSFSKSG----RLLLAGYDDFNCNVWDALKAD---RAGVLAGHDNRVSCLGVTDDGMAVATGSWD  333 (340)
T ss_dssp             -EEECCTTCCSCEEEEEECSSS----CEEEEEETTSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             -cccccccccCceEEEEECCCC----CEEEEEECCCEEEEEECCCCc---EEEEEcCCCCCEEEEEEeCCCCEEEEEccC
Confidence             122335667789999999974    789999999999999987532   234456788899999999999999999999


Q ss_pred             CcEEEeE
Q 036510          280 NNVTLWE  286 (288)
Q Consensus       280 ~~v~~w~  286 (288)
                      |+|+|||
T Consensus       334 g~v~iWd  340 (340)
T d1tbga_         334 SFLKIWN  340 (340)
T ss_dssp             SCEEEEC
T ss_pred             CEEEEeC
Confidence            9999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.5e-39  Score=271.55  Aligned_cols=255  Identities=18%  Similarity=0.219  Sum_probs=200.7

Q ss_pred             CccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeC--CCcE
Q 036510            4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSF--DGTV   81 (288)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~--d~~v   81 (288)
                      .+++.+|...|.+++|+|+|++|++|+.|++|+|||+..........+.+|..+|.+++|+++  +.+|++++.  +..+
T Consensus        51 ~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d--~~~l~~~~~~~~~~~  128 (311)
T d1nr0a1          51 TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE--SKRIAAVGEGRERFG  128 (311)
T ss_dssp             CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTT--SCEEEEEECCSSCSE
T ss_pred             eEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccc--ccccccccccccccc
Confidence            345679999999999999999999999999999999976544445678899999999999864  788988886  5669


Q ss_pred             EEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCC
Q 036510           82 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPST  161 (288)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~  161 (288)
                      ++|+..+..   ....+.+|.+.|++++|+|++ ..++++|+.|+.|++||++..   ........|...|.++.|+|++
T Consensus       129 ~v~~~~~~~---~~~~l~~h~~~v~~v~~~~~~-~~~l~sgs~d~~i~i~d~~~~---~~~~~~~~~~~~i~~v~~~p~~  201 (311)
T d1nr0a1         129 HVFLFDTGT---SNGNLTGQARAMNSVDFKPSR-PFRIISGSDDNTVAIFEGPPF---KFKSTFGEHTKFVHSVRYNPDG  201 (311)
T ss_dssp             EEEETTTCC---BCBCCCCCSSCEEEEEECSSS-SCEEEEEETTSCEEEEETTTB---EEEEEECCCSSCEEEEEECTTS
T ss_pred             ccccccccc---ccccccccccccccccccccc-eeeeccccccccccccccccc---ccccccccccccccccccCccc
Confidence            999987654   345677899999999999985 346889999999999999864   2344566889999999999987


Q ss_pred             CCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeee---eeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEE
Q 036510          162 APGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDC---FPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVI  238 (288)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~  238 (288)
                                    +++++++.|+.|++||+.++......   .....+|..+|.+++|+|++    ++|++|+.|++|+
T Consensus       202 --------------~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~----~~l~tgs~Dg~v~  263 (311)
T d1nr0a1         202 --------------SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG----TKIASASADKTIK  263 (311)
T ss_dssp             --------------SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS----SEEEEEETTSEEE
T ss_pred             --------------cccccccccccccccccccccccccccccccccccccccccccccCCCC----CEEEEEeCCCeEE
Confidence                          78999999999999998775321111   11235799999999999984    7899999999999


Q ss_pred             EEEeecCCCcccceEeecccc-CeEEEEeecCCCEEEEEeCCCcEEEeEcC
Q 036510          239 IWTVAREGDQWEGKVLHDFKT-PVYRVSWSLTGNILAVADGNNNVTLWEEA  288 (288)
Q Consensus       239 iw~~~~~~~~~~~~~~~~~~~-~i~~~~~spdg~~l~s~~~d~~v~~w~~~  288 (288)
                      |||++..+   ....+..+.. ....+.+.++++.|++++.||.|++||.+
T Consensus       264 iwd~~t~~---~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         264 IWNVATLK---VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEETTTTE---EEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             EEECCCCc---EEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            99987532   1122222221 22234455567789999999999999964

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-38  Score=268.87  Aligned_cols=242  Identities=17%  Similarity=0.254  Sum_probs=204.2

Q ss_pred             cccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecC
Q 036510            8 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEG   87 (288)
Q Consensus         8 ~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~   87 (288)
                      .+|++.|.+++|+|+|++|++|+.|++|++||+.....+....+.+|...+..++|+++  +.++++++.|+.+++|++.
T Consensus        94 ~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~d~~i~~~~~~  171 (337)
T d1gxra_          94 LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD--SKVCFSCCSDGNIAVWDLH  171 (337)
T ss_dssp             SCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTT--SSEEEEEETTSCEEEEETT
T ss_pred             cCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccc--ccccccccccccccccccc
Confidence            47999999999999999999999999999999876666677888999999999999864  7899999999999999997


Q ss_pred             CCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCcee
Q 036510           88 NSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV  167 (288)
Q Consensus        88 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~  167 (288)
                      +..   .......|...|.+++|+|+  +..+++|+.|+.+++||++++....    ...|+..|.++.|+|++      
T Consensus       172 ~~~---~~~~~~~~~~~v~~l~~s~~--~~~~~~~~~d~~v~i~d~~~~~~~~----~~~~~~~i~~l~~~~~~------  236 (337)
T d1gxra_         172 NQT---LVRQFQGHTDGASCIDISND--GTKLWTGGLDNTVRSWDLREGRQLQ----QHDFTSQIFSLGYCPTG------  236 (337)
T ss_dssp             TTE---EEEEECCCSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEECTTS------
T ss_pred             ccc---cccccccccccccccccccc--ccccccccccccccccccccceeec----ccccccceEEEEEcccc------
Confidence            654   34456679999999999997  5678999999999999998753221    23477889999999987      


Q ss_pred             cccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCC
Q 036510          168 GSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGD  247 (288)
Q Consensus       168 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~  247 (288)
                              ++|++++.|+.+++||+..+.     ......|...|.+++|+|++    ++|++|+.|+.|++||+.....
T Consensus       237 --------~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~i~~v~~s~~g----~~l~s~s~Dg~i~iwd~~~~~~  299 (337)
T d1gxra_         237 --------EWLAVGMESSNVEVLHVNKPD-----KYQLHLHESCVLSLKFAYCG----KWFVSTGKDNLLNAWRTPYGAS  299 (337)
T ss_dssp             --------SEEEEEETTSCEEEEETTSSC-----EEEECCCSSCEEEEEECTTS----SEEEEEETTSEEEEEETTTCCE
T ss_pred             --------cccceeccccccccccccccc-----cccccccccccceEEECCCC----CEEEEEeCCCeEEEEECCCCCE
Confidence                    789999999999999997753     12346789999999999984    6899999999999999865321


Q ss_pred             cccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          248 QWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       248 ~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                          ....++.+.|.+++|+|||++|++|+.|++|+|||+
T Consensus       300 ----~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         300 ----IFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             ----EEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             ----EEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence                122346789999999999999999999999999995

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.7e-38  Score=273.10  Aligned_cols=249  Identities=20%  Similarity=0.337  Sum_probs=204.0

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN   90 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~   90 (288)
                      .++|++++|+|+|++||+|+.|+.|+||+.+.+....+..+.+|.++|.+++|+|+  +++|++|+.|++|+|||+....
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~--~~~l~s~s~D~~i~vWd~~~~~   84 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD--SNRIVTCGTDRNAYVWTLKGRT   84 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT--TTEEEEEETTSCEEEEEEETTE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCC--CCEEEEEECCCeEEEEeecccc
Confidence            47899999999999999999999999999976555678889999999999999865  8899999999999999997543


Q ss_pred             ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCee-eEEeeccCCCCeeEEEeCCCCCCCceecc
Q 036510           91 EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWD-TSRIDQAHPVGVTSVSWAPSTAPGALVGS  169 (288)
Q Consensus        91 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~v~~i~~~p~~~~~~~~~~  169 (288)
                       +.....+..|...|.+++|+|+  +..+++|+.|++|++|++....... .......|...|.+++|+|++        
T Consensus        85 -~~~~~~~~~~~~~v~~i~~~p~--~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~--------  153 (371)
T d1k8kc_          85 -WKPTLVILRINRAARCVRWAPN--EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS--------  153 (371)
T ss_dssp             -EEEEEECCCCSSCEEEEEECTT--SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS--------
T ss_pred             -cccccccccccccccccccccc--cccceeecccCcceeeeeecccccccccccccccccccccccccccc--------
Confidence             3344456678899999999998  6789999999999999987755432 233456788899999999987        


Q ss_pred             cccCCCceeEEeecCCcEEEEEEeCCcee--------------eeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCC
Q 036510          170 GFLDPVQKLCSGGCDNTVKVWKLYNGIWK--------------MDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG  235 (288)
Q Consensus       170 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--------------~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~  235 (288)
                            .+|++|+.|++|++||+......              .+......+|...|.+++|+|++    ++|++++.|+
T Consensus       154 ------~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g----~~l~s~~~d~  223 (371)
T d1k8kc_         154 ------VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG----SRVAWVSHDS  223 (371)
T ss_dssp             ------SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS----SEEEEEETTT
T ss_pred             ------cceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccc----ccccccccCC
Confidence                  78999999999999998643210              12334557899999999999984    6899999999


Q ss_pred             cEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          236 KVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       236 ~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      +|++||++...   ....+..+..+|.+++|+|||++|++| .|+.+++|.
T Consensus       224 ~i~iwd~~~~~---~~~~~~~~~~~v~s~~fs~d~~~la~g-~d~~~~~~~  270 (371)
T d1k8kc_         224 TVCLADADKKM---AVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFT  270 (371)
T ss_dssp             EEEEEEGGGTT---EEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEE
T ss_pred             cceEEeeeccc---ceeeeecccccceeeeecCCCCEEEEE-cCCceEEEE
Confidence            99999987642   234455677899999999999988866 577777765

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2e-37  Score=260.23  Aligned_cols=254  Identities=18%  Similarity=0.249  Sum_probs=192.5

Q ss_pred             CccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEE-eccccCeEEEEecCCCCCCEEEEeeCCCcEE
Q 036510            4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKL-SGHKGAVWEVAWAHPKFGSILASCSFDGTVI   82 (288)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~   82 (288)
                      .+++.||++.|++++|+|+|++|+||+.|++|++||+..+  +.+..+ .+|...|++++|+++  + .+++++.|+.++
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~--~~~~~~~~~h~~~v~~v~~~~~--g-~~~~~~~d~~v~   79 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG--ISNRVFPDVHATMITGIKTTSK--G-DLFTVSWDDHLK   79 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEECSSCSCSSCEEEEEECTT--S-CEEEEETTTEEE
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCC--cEEEEEcCCCCCcEEEEEeecc--c-eeecccceeeEE
Confidence            4678899999999999999999999999999999998543  455555 479999999999864  4 467778899999


Q ss_pred             EeecCCCCc-----e-------E-Ee-----------------EE-------eecCCCceeEEEeccCCCCeEEEEEeCC
Q 036510           83 IWKEGNSNE-----W-------I-KD-----------------HV-------FEDHKSSVNSIDWAPHELGLCLACGSSD  125 (288)
Q Consensus        83 iwd~~~~~~-----~-------~-~~-----------------~~-------~~~h~~~v~~l~~~p~~~~~~l~sg~~d  125 (288)
                      +|+......     .       . ..                 ..       .......+.+++|+|+  +.++++|+.|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~~g~~d  157 (299)
T d1nr0a2          80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSND--KQFVAVGGQD  157 (299)
T ss_dssp             EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTT--SCEEEEEETT
T ss_pred             EeccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccc
Confidence            998642110     0       0 00                 00       0013345778888887  5788999999


Q ss_pred             CcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecc
Q 036510          126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPAL  205 (288)
Q Consensus       126 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  205 (288)
                      +.|++||++....  .......|+..|.++.|+|++              .+|++++.|+.|++||+.++.. ......+
T Consensus       158 g~i~~~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~--------------~~l~~~~~d~~i~~~~~~~~~~-~~~~~~~  220 (299)
T d1nr0a2         158 SKVHVYKLSGASV--SEVKTIVHPAEITSVAFSNNG--------------AFLVATDQSRKVIPYSVANNFE-LAHTNSW  220 (299)
T ss_dssp             SEEEEEEEETTEE--EEEEEEECSSCEEEEEECTTS--------------SEEEEEETTSCEEEEEGGGTTE-ESCCCCC
T ss_pred             ccccccccccccc--ccccccccccccccccccccc--------------cccccccccccccccccccccc-ccccccc
Confidence            9999999976431  122334688899999999987              7899999999999999876532 2334566


Q ss_pred             ccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccc-cCeEEEEeecCCCEEEEEeCCCcEEE
Q 036510          206 QMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFK-TPVYRVSWSLTGNILAVADGNNNVTL  284 (288)
Q Consensus       206 ~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~-~~i~~~~~spdg~~l~s~~~d~~v~~  284 (288)
                      .+|...|.+++|+|++    .+|++|+.|+.|++||++...... ......+. ..+..+ ++|++++|++|+.|++|+|
T Consensus       221 ~~h~~~v~~l~~s~~~----~~l~sgs~dg~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~-~~~~~~~l~s~s~D~~i~i  294 (299)
T d1nr0a2         221 TFHTAKVACVSWSPDN----VRLATGSLDNSVIVWNMNKPSDHP-IIIKGAHAMSSVNSV-IWLNETTIVSAGQDSNIKF  294 (299)
T ss_dssp             CCCSSCEEEEEECTTS----SEEEEEETTSCEEEEETTCTTSCC-EEETTSSTTSCEEEE-EEEETTEEEEEETTSCEEE
T ss_pred             cccccccccccccccc----cceEEEcCCCEEEEEECCCCCcce-EEEecCCCCCcEEEE-EECCCCEEEEEeCCCEEEE
Confidence            7899999999999984    789999999999999987643221 12222333 455555 5567889999999999999


Q ss_pred             eEc
Q 036510          285 WEE  287 (288)
Q Consensus       285 w~~  287 (288)
                      ||+
T Consensus       295 Wdl  297 (299)
T d1nr0a2         295 WNV  297 (299)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            996

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-36  Score=258.69  Aligned_cols=243  Identities=18%  Similarity=0.265  Sum_probs=200.6

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCc-ee--eEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTS-QH--LAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~-~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      +|...|.+++|+|+|++|++|+ |++|+|||+..... ..  .....+|...|.+++|+++  +++|++++.|++|++||
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~d--g~~l~s~~~dg~i~iwd  125 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD--GCTLIVGGEASTLSIWD  125 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT--SSEEEEEESSSEEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCC--CCEEEEeeccccccccc
Confidence            7999999999999999999987 89999999864321 12  2334579999999999865  89999999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCc
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~  165 (288)
                      +..... .....+..|...+.++.|+|+  +.++++++.|+.|++|+++...   .......|...+.++.|+|++    
T Consensus       126 ~~~~~~-~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~d~~i~~~~~~~~~---~~~~~~~~~~~v~~l~~s~~~----  195 (337)
T d1gxra_         126 LAAPTP-RIKAELTSSAPACYALAISPD--SKVCFSCCSDGNIAVWDLHNQT---LVRQFQGHTDGASCIDISNDG----  195 (337)
T ss_dssp             CCCC---EEEEEEECSSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTTE---EEEEECCCSSCEEEEEECTTS----
T ss_pred             cccccc-ccccccccccccccccccccc--cccccccccccccccccccccc---ccccccccccccccccccccc----
Confidence            865432 234556789999999999997  6788999999999999997653   334556788999999999987    


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE  245 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~  245 (288)
                                ..+++++.|+.+++||++++.    .+.. ..|...|.+++|+|+.    .+|++|+.|+.|++||++..
T Consensus       196 ----------~~~~~~~~d~~v~i~d~~~~~----~~~~-~~~~~~i~~l~~~~~~----~~l~~~~~d~~i~i~d~~~~  256 (337)
T d1gxra_         196 ----------TKLWTGGLDNTVRSWDLREGR----QLQQ-HDFTSQIFSLGYCPTG----EWLAVGMESSNVEVLHVNKP  256 (337)
T ss_dssp             ----------SEEEEEETTSEEEEEETTTTE----EEEE-EECSSCEEEEEECTTS----SEEEEEETTSCEEEEETTSS
T ss_pred             ----------cccccccccccccccccccce----eecc-cccccceEEEEEcccc----cccceecccccccccccccc
Confidence                      789999999999999998763    2333 3478889999999974    78999999999999998754


Q ss_pred             CCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          246 GDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       246 ~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      .    ......|...|.+++|+|+|++|++|+.|++|+|||.
T Consensus       257 ~----~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~  294 (337)
T d1gxra_         257 D----KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT  294 (337)
T ss_dssp             C----EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             c----cccccccccccceEEECCCCCEEEEEeCCCeEEEEEC
Confidence            2    2334567789999999999999999999999999985

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.3e-36  Score=258.23  Aligned_cols=246  Identities=19%  Similarity=0.264  Sum_probs=197.3

Q ss_pred             cccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC
Q 036510           10 HEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS   89 (288)
Q Consensus        10 h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~   89 (288)
                      +.+.+..++++|+|+.|+.++ ++.+.+|+++..  .....+.+|...|.+++|+|+  +++|++|+.||+|+|||+...
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~--~~~~~~~~H~~~v~~~~~sp~--g~~latg~~dg~i~iwd~~~~   90 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSL--TDTEIYTEHSHQTTVAKTSPS--GYYCASGDVHGNVRIWDTTQT   90 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCS--SCCEEECCCSSCEEEEEECTT--SSEEEEEETTSEEEEEESSST
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCC--ceeEEEcCCCCCEEEEEEeCC--CCeEeccccCceEeeeeeecc
Confidence            344556789999999998875 667999998643  456678999999999999864  899999999999999999765


Q ss_pred             CceEEeEEeecCCCceeEEEeccCCCCeEEEEEeC--CCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCcee
Q 036510           90 NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSS--DGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV  167 (288)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~  167 (288)
                      ... ....+..|..+|.+++|+|+  +.++++++.  +..+++|+++....   .....+|...|.++.|+|++.     
T Consensus        91 ~~~-~~~~~~~~~~~v~~v~~s~d--~~~l~~~~~~~~~~~~v~~~~~~~~---~~~l~~h~~~v~~v~~~~~~~-----  159 (311)
T d1nr0a1          91 THI-LKTTIPVFSGPVKDISWDSE--SKRIAAVGEGRERFGHVFLFDTGTS---NGNLTGQARAMNSVDFKPSRP-----  159 (311)
T ss_dssp             TCC-EEEEEECSSSCEEEEEECTT--SCEEEEEECCSSCSEEEEETTTCCB---CBCCCCCSSCEEEEEECSSSS-----
T ss_pred             ccc-cccccccccCcccccccccc--ccccccccccccccccccccccccc---cccccccccccccccccccce-----
Confidence            432 33457789999999999998  556666654  56799999876532   234567889999999999873     


Q ss_pred             cccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCC
Q 036510          168 GSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGD  247 (288)
Q Consensus       168 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~  247 (288)
                              ..|++|+.|+.|++||++++    ++...+.+|...|.++.|+|++    ++|++++.|+.|++||......
T Consensus       160 --------~~l~sgs~d~~i~i~d~~~~----~~~~~~~~~~~~i~~v~~~p~~----~~l~~~~~d~~v~~~d~~~~~~  223 (311)
T d1nr0a1         160 --------FRIISGSDDNTVAIFEGPPF----KFKSTFGEHTKFVHSVRYNPDG----SLFASTGGDGTIVLYNGVDGTK  223 (311)
T ss_dssp             --------CEEEEEETTSCEEEEETTTB----EEEEEECCCSSCEEEEEECTTS----SEEEEEETTSCEEEEETTTCCE
T ss_pred             --------eeeccccccccccccccccc----ccccccccccccccccccCccc----cccccccccccccccccccccc
Confidence                    45889999999999998875    4556678899999999999984    7899999999999999875321


Q ss_pred             cc----cceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          248 QW----EGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       248 ~~----~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ..    ......+|.++|++++|+|+|++|++|+.|++|+|||.
T Consensus       224 ~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~  267 (311)
T d1nr0a1         224 TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV  267 (311)
T ss_dssp             EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             cccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEEC
Confidence            10    01112346678999999999999999999999999995

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.5e-35  Score=253.63  Aligned_cols=255  Identities=19%  Similarity=0.192  Sum_probs=199.0

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      .+.+|+++|.+++|+|++++|++|+.|++|++||+..........+.+|...|.+++|+++  ++.|++++.|+++++|+
T Consensus        46 ~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~--~~~l~~~s~d~~i~i~~  123 (371)
T d1k8kc_          46 ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN--EKKFAVGSGSRVISICY  123 (371)
T ss_dssp             EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTT--SSEEEEEETTSSEEEEE
T ss_pred             EecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccc--cccceeecccCcceeee
Confidence            4569999999999999999999999999999999976555566677889999999999864  89999999999999999


Q ss_pred             cCCCCce-EEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCC---------------eeeEEeeccCC
Q 036510           86 EGNSNEW-IKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGG---------------WDTSRIDQAHP  149 (288)
Q Consensus        86 ~~~~~~~-~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~---------------~~~~~~~~~~~  149 (288)
                      ....... ........|...|.+++|+|+  +.++++|+.|++|++|+......               .........|.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~--~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (371)
T d1k8kc_         124 FEQENDWWVCKHIKKPIRSTVLSLDWHPN--SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC  201 (371)
T ss_dssp             EETTTTEEEEEEECTTCCSCEEEEEECTT--SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS
T ss_pred             eeccccccccccccccccccccccccccc--ccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCcc
Confidence            8665432 223345578899999999997  67899999999999999864211               01123345688


Q ss_pred             CCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEE
Q 036510          150 VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIA  229 (288)
Q Consensus       150 ~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~  229 (288)
                      ..|.+++|+|++              ++|++++.|++|++||+.++    ..+..+..|..+|.++.|+|++    .+|+
T Consensus       202 ~~v~~~~~s~~g--------------~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~s~~fs~d~----~~la  259 (371)
T d1k8kc_         202 GWVHGVCFSANG--------------SRVAWVSHDSTVCLADADKK----MAVATLASETLPLLAVTFITES----SLVA  259 (371)
T ss_dssp             SCEEEEEECSSS--------------SEEEEEETTTEEEEEEGGGT----TEEEEEECSSCCEEEEEEEETT----EEEE
T ss_pred             CcEEEEEeeccc--------------ccccccccCCcceEEeeecc----cceeeeecccccceeeeecCCC----CEEE
Confidence            889999999987              78999999999999999876    3456678899999999999973    4555


Q ss_pred             EEeCCCcEEEEEeecCCCccc----------ce----------------------------EeeccccCeEEEEeecCC-
Q 036510          230 SASEDGKVIIWTVAREGDQWE----------GK----------------------------VLHDFKTPVYRVSWSLTG-  270 (288)
Q Consensus       230 s~s~D~~i~iw~~~~~~~~~~----------~~----------------------------~~~~~~~~i~~~~~spdg-  270 (288)
                       ++.|+.+++|..........          ..                            ....|.+.|+++++.|.+ 
T Consensus       260 -~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~  338 (371)
T d1k8kc_         260 -AGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGK  338 (371)
T ss_dssp             -EETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTT
T ss_pred             -EEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCC
Confidence             55577777877654211000          00                            001256789999998865 


Q ss_pred             ---CEEEEEeCCCcEEEeEc
Q 036510          271 ---NILAVADGNNNVTLWEE  287 (288)
Q Consensus       271 ---~~l~s~~~d~~v~~w~~  287 (288)
                         ..|++++.||+|+|||+
T Consensus       339 ~~~~~~~T~g~Dg~v~iW~~  358 (371)
T d1k8kc_         339 AKCSQFCTTGMDGGMSIWDV  358 (371)
T ss_dssp             TSCSEEEEEETTSEEEEEEH
T ss_pred             cceEEEEEEcCCCeEEEEeC
Confidence               36999999999999995

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.1e-35  Score=252.27  Aligned_cols=250  Identities=26%  Similarity=0.352  Sum_probs=197.4

Q ss_pred             cccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecC
Q 036510            8 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEG   87 (288)
Q Consensus         8 ~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~   87 (288)
                      .+|...|.+++|+|+|++|++|+.|++|++|+...  .+.+..+.+|...|.++.|+++  +..+++++.++.+++||..
T Consensus       118 ~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~--~~~~~~~~~h~~~v~~~~~~~~--~~~~~~~~~~~~i~~~d~~  193 (388)
T d1erja_         118 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIEN--RKIVMILQGHEQDIYSLDYFPS--GDKLVSGSGDRTVRIWDLR  193 (388)
T ss_dssp             -CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTT--SSEEEEEETTSEEEEEETT
T ss_pred             cCCCCCEEEEEECCCCCcceecccccccccccccc--cccccccccccccccccccccc--cccccccccceeeeeeecc
Confidence            46888999999999999999999999999999853  4678888999999999999864  7899999999999999987


Q ss_pred             CCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeE----EeeccCCCCeeEEEeCCCCCC
Q 036510           88 NSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTS----RIDQAHPVGVTSVSWAPSTAP  163 (288)
Q Consensus        88 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~----~~~~~~~~~v~~i~~~p~~~~  163 (288)
                      ...   ...... +.....++.++|.+ +.++++|+.|+.|++|+.+.+......    ....+|...|.++.|+|++  
T Consensus       194 ~~~---~~~~~~-~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~--  266 (388)
T d1erja_         194 TGQ---CSLTLS-IEDGVTTVAVSPGD-GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG--  266 (388)
T ss_dssp             TTE---EEEEEE-CSSCEEEEEECSTT-CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS--
T ss_pred             ccc---cccccc-cccccccccccCCC-CCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCC--
Confidence            643   222333 44566677777653 678999999999999999865432221    1234688899999999987  


Q ss_pred             CceecccccCCCceeEEeecCCcEEEEEEeCCcee--------eeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCC
Q 036510          164 GALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWK--------MDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG  235 (288)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--------~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~  235 (288)
                                  .+|++++.|+.|++||+..+...        ..+......|...|.+++|+|++    .+|++|+.|+
T Consensus       267 ------------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~sg~~dg  330 (388)
T d1erja_         267 ------------QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND----EYILSGSKDR  330 (388)
T ss_dssp             ------------SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG----CEEEEEETTS
T ss_pred             ------------CEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCC----CEEEEEeCCC
Confidence                        78999999999999998754211        12233456789999999999974    6899999999


Q ss_pred             cEEEEEeecCCCcccceEeeccccCeEEEE------eecCCCEEEEEeCCCcEEEeEc
Q 036510          236 KVIIWTVAREGDQWEGKVLHDFKTPVYRVS------WSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       236 ~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~------~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      +|++||++..+   ....+.+|.+.|++++      |+|||++|++|+.|++|+|||+
T Consensus       331 ~i~vwd~~~~~---~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~  385 (388)
T d1erja_         331 GVLFWDKKSGN---PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY  385 (388)
T ss_dssp             EEEEEETTTCC---EEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             EEEEEECCCCc---EEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEee
Confidence            99999987542   2345567888998886      5789999999999999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-34  Score=250.85  Aligned_cols=248  Identities=22%  Similarity=0.327  Sum_probs=189.2

Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEE------------------eccccCeEEEEecCCCCCC
Q 036510            9 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKL------------------SGHKGAVWEVAWAHPKFGS   70 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~------------------~~h~~~v~~~~~~~~~~~~   70 (288)
                      +|++.|++++|+|+|++|++|+ |++|+|||+..+  +.+..+                  .+|...|++++|+++  ++
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~--~~  134 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDG--SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD--GK  134 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTC--CEEEEECC-----------------CCCCBEEEEEECTT--SS
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEeccc--ceEeeecccccccccccccccccccCCCCCEEEEEECCC--CC
Confidence            6999999999999999999987 899999998543  333333                  357777999999864  89


Q ss_pred             EEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCC
Q 036510           71 ILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV  150 (288)
Q Consensus        71 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~  150 (288)
                      +|++|+.|++|++|+...+.   ....+.+|...|.++.|+++  +..+++|+.++.+++||.+....   .... .+..
T Consensus       135 ~l~s~~~dg~v~i~~~~~~~---~~~~~~~h~~~v~~~~~~~~--~~~~~~~~~~~~i~~~d~~~~~~---~~~~-~~~~  205 (388)
T d1erja_         135 FLATGAEDRLIRIWDIENRK---IVMILQGHEQDIYSLDYFPS--GDKLVSGSGDRTVRIWDLRTGQC---SLTL-SIED  205 (388)
T ss_dssp             EEEEEETTSCEEEEETTTTE---EEEEECCCSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTTEE---EEEE-ECSS
T ss_pred             cceecccccccccccccccc---cccccccccccccccccccc--cccccccccceeeeeeecccccc---cccc-cccc
Confidence            99999999999999987654   34556789999999999987  56788999999999999876422   1222 2334


Q ss_pred             CeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeee---eeccccCCcceEEEEecCCCCCCCcE
Q 036510          151 GVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDC---FPALQMHTDWVRDVAWAPNLGLPKST  227 (288)
Q Consensus       151 ~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~h~~~V~~v~~sp~~~~~~~~  227 (288)
                      ...++.++|..             +.+|++++.|+.|++||+.++......   .....+|...|.++.|+|++    .+
T Consensus       206 ~~~~~~~~~~~-------------~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~----~~  268 (388)
T d1erja_         206 GVTTVAVSPGD-------------GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG----QS  268 (388)
T ss_dssp             CEEEEEECSTT-------------CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS----SE
T ss_pred             ccccccccCCC-------------CCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCC----CE
Confidence            45666666644             278999999999999998776422111   12345789999999999974    78


Q ss_pred             EEEEeCCCcEEEEEeecCCCcc---------cceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          228 IASASEDGKVIIWTVAREGDQW---------EGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       228 l~s~s~D~~i~iw~~~~~~~~~---------~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      |++|+.|+.|++||+.......         .......|...|.+++|+|+|++|++|+.||+|+|||+
T Consensus       269 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~  337 (388)
T d1erja_         269 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK  337 (388)
T ss_dssp             EEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred             EEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            9999999999999987542110         11122345678999999999999999999999999995

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-34  Score=247.05  Aligned_cols=252  Identities=13%  Similarity=0.166  Sum_probs=186.8

Q ss_pred             cccc-ccceEEEEEcC--CCCEEEEeeCCCcEEEEEeCCCC------ceeeEEEeccccCeEEEEecCCCCCCEEEEeeC
Q 036510            7 ETGH-EDTVHDVAMDY--YGKRLATASSDYSIKIIGVGNNT------SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSF   77 (288)
Q Consensus         7 ~~~h-~~~v~~~~~s~--~g~~l~s~~~d~~i~lwd~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~   77 (288)
                      +.+| ...|++++|+|  +|++|+||+.|++|+|||+....      ......+..|..+|.+++|+++  ++++++++.
T Consensus        58 ~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~  135 (325)
T d1pgua1          58 FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE--GRRLCVVGE  135 (325)
T ss_dssp             ECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTT--SSEEEEEEC
T ss_pred             EeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCC--CCccceeec
Confidence            4466 57899999997  57899999999999999985321      1122345678999999999864  788877654


Q ss_pred             --CCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEE
Q 036510           78 --DGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSV  155 (288)
Q Consensus        78 --d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i  155 (288)
                        ++.+++|+..++.   ....+.+|...|++++|+|++ ..++++++.|+.+++|+.+.............|...|.++
T Consensus       136 ~~~~~~~~~~~~~~~---~~~~~~~h~~~v~~~~~~~~~-~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v  211 (325)
T d1pgua1         136 GRDNFGVFISWDSGN---SLGEVSGHSQRINACHLKQSR-PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDV  211 (325)
T ss_dssp             CSSCSEEEEETTTCC---EEEECCSCSSCEEEEEECSSS-SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEE
T ss_pred             cccceEEEEeecccc---cceeeeecccccccccccccc-cceEEEeecccccccccccccccceecccccCCCCccEEe
Confidence              7789999987654   455678899999999999985 4567889999999999987543222222345677889999


Q ss_pred             EeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEec---CCCCCCCcEEEEEe
Q 036510          156 SWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWA---PNLGLPKSTIASAS  232 (288)
Q Consensus       156 ~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~s---p~~~~~~~~l~s~s  232 (288)
                      .|+|+..             .+|++++.|+.|++||++++    +++..+.+|..+|.++.|+   |+    +++|++++
T Consensus       212 ~~~pd~~-------------~~l~s~~~d~~i~iwd~~~~----~~~~~l~~~~~~v~~~~~s~~~~d----g~~l~s~s  270 (325)
T d1pgua1         212 EFSPDSG-------------EFVITVGSDRKISCFDGKSG----EFLKYIEDDQEPVQGGIFALSWLD----SQKFATVG  270 (325)
T ss_dssp             EECSTTC-------------CEEEEEETTCCEEEEETTTC----CEEEECCBTTBCCCSCEEEEEESS----SSEEEEEE
T ss_pred             eeccccc-------------eeccccccccceeeeeeccc----cccccccccccccccceeeeeccC----CCEEEEEe
Confidence            9999752             67999999999999998876    3556777888777666665   44    46899999


Q ss_pred             CCCcEEEEEeecCCCcccceEeeccccCeE--EEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          233 EDGKVIIWTVAREGDQWEGKVLHDFKTPVY--RVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       233 ~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~--~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      .|++|+|||++..+ ....-..+.+...+.  ++.++++ .+|++++.|++|+|||+
T Consensus       271 ~D~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         271 ADATIRVWDVTTSK-CVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TTSEEEEEETTTTE-EEEEEECCTTCGGGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred             CCCeEEEEECCCCC-EEEEEEecCCcccCeEEEEEECCC-CEEEEEECCCEEEEEEC
Confidence            99999999987532 111111223322333  4444443 47889999999999995

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-33  Score=239.27  Aligned_cols=249  Identities=23%  Similarity=0.368  Sum_probs=184.5

Q ss_pred             CCCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcE
Q 036510            2 PPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTV   81 (288)
Q Consensus         2 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v   81 (288)
                      .+.+++.||++.|.+ +++++|++|+|||.|++|+|||+..  ++++.++.+|...|++++|++    .+|++++.|+++
T Consensus         7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~--~~~~~~~~~h~~~V~~v~~~~----~~l~s~s~D~~~   79 (342)
T d2ovrb2           7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVT--GKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTL   79 (342)
T ss_dssp             CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTT--CCEEEECCCCSSCEEEEEEET----TEEEEEETTSCE
T ss_pred             CcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCC--CCEEEEEeCCCCCEEEEEeCC----Cccccceecccc
Confidence            456778899999865 4677899999999999999999853  477899999999999999973    599999999999


Q ss_pred             EEeecCCCCceE--------------------------------------------------------------------
Q 036510           82 IIWKEGNSNEWI--------------------------------------------------------------------   93 (288)
Q Consensus        82 ~iwd~~~~~~~~--------------------------------------------------------------------   93 (288)
                      ++|+........                                                                    
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  159 (342)
T d2ovrb2          80 KVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV  159 (342)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCE
T ss_pred             cccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeE
Confidence            999864211000                                                                    


Q ss_pred             ---------EeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510           94 ---------KDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG  164 (288)
Q Consensus        94 ---------~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~  164 (288)
                               ....+.+|...+.++.+  +  +..+++|+.|+.|++||++....   .....+|...+.++.+++     
T Consensus       160 ~~~d~~~~~~~~~~~~~~~~~~~~~~--~--~~~l~s~~~dg~i~~~d~~~~~~---~~~~~~~~~~v~~~~~~~-----  227 (342)
T d2ovrb2         160 KVWDPETETCLHTLQGHTNRVYSLQF--D--GIHVVSGSLDTSIRVWDVETGNC---IHTLTGHQSLTSGMELKD-----  227 (342)
T ss_dssp             EEEEGGGTEEEEEECCCSSCEEEEEE--C--SSEEEEEETTSCEEEEETTTCCE---EEEECCCCSCEEEEEEET-----
T ss_pred             EEeecccceeeEEEcCcccccccccC--C--CCEEEEEeCCCeEEEeeccccee---eeEecccccceeEEecCC-----
Confidence                     00011223333333333  3  45688999999999999876532   345567888888888765     


Q ss_pred             ceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510          165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR  244 (288)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~  244 (288)
                                 ++|++++.|+.|++||+...... ..+.....|...+.++.++|+      ++++|+.|++|++||++.
T Consensus       228 -----------~~l~s~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~s~s~Dg~i~iwd~~t  289 (342)
T d2ovrb2         228 -----------NILVSGNADSTVKIWDIKTGQCL-QTLQGPNKHQSAVTCLQFNKN------FVITSSDDGTVKLWDLKT  289 (342)
T ss_dssp             -----------TEEEEEETTSCEEEEETTTCCEE-EEECSTTSCSSCEEEEEECSS------EEEEEETTSEEEEEETTT
T ss_pred             -----------CEEEEEcCCCEEEEEeccccccc-ccccccceeeeceeecccCCC------eeEEEcCCCEEEEEECCC
Confidence                       56999999999999998765322 233344567788899988764      799999999999999875


Q ss_pred             CCCcccceE--eeccccCeEEEEeecCCCEEEEEeCCCc----EEEeEc
Q 036510          245 EGDQWEGKV--LHDFKTPVYRVSWSLTGNILAVADGNNN----VTLWEE  287 (288)
Q Consensus       245 ~~~~~~~~~--~~~~~~~i~~~~~spdg~~l~s~~~d~~----v~~w~~  287 (288)
                      .+.......  ..++.+.|++++|+|++.+||+|+.||+    |++||+
T Consensus       290 g~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df  338 (342)
T d2ovrb2         290 GEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF  338 (342)
T ss_dssp             CCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred             CCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeC
Confidence            421111111  1235568999999999999999999986    999995

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-33  Score=237.09  Aligned_cols=261  Identities=22%  Similarity=0.313  Sum_probs=177.4

Q ss_pred             CCCccccccccce-EEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCc
Q 036510            2 PPQKIETGHEDTV-HDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGT   80 (288)
Q Consensus         2 ~~~~~~~~h~~~v-~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~   80 (288)
                      |++..+.||++.| ++++  ++|++|+||+.|++|+|||+.  +++++.++.+|.+.|++++|++   +.+|++|+.|++
T Consensus         3 p~~~tL~GH~~~vitc~~--~~~~~l~tgs~Dg~i~vWd~~--~~~~~~~l~~H~~~V~~l~~s~---~~~l~s~s~D~~   75 (355)
T d1nexb2           3 PQRTTLRGHMTSVITCLQ--FEDNYVITGADDKMIRVYDSI--NKKFLLQLSGHDGGVWALKYAH---GGILVSGSTDRT   75 (355)
T ss_dssp             CEEEEEECCSSSCEEEEE--EETTEEEEEETTTEEEEEETT--TTEEEEEEECCSSCEEEEEEET---TTEEEEEETTCC
T ss_pred             CCcEEECCcCCCcEEEEE--ECCCEEEEEeCCCeEEEEECC--CCcEEEEEECCCCCEEEEEEcC---CCEEEEEecccc
Confidence            3455678998886 5554  468999999999999999985  3578999999999999999975   468999999999


Q ss_pred             EEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeee-------------------
Q 036510           81 VIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDT-------------------  141 (288)
Q Consensus        81 v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~-------------------  141 (288)
                      |++|+....... .......+...+....++++  +.++++++.|+.|++|+++.......                   
T Consensus        76 i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (355)
T d1nexb2          76 VRVWDIKKGCCT-HVFEGHNSTVRCLDIVEYKN--IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPY  152 (355)
T ss_dssp             EEEEETTTTEEE-EEECCCSSCEEEEEEEEETT--EEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTT
T ss_pred             cccccccccccc-cccccccccccccccccccc--cceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccc
Confidence            999998765421 11112223333445556665  67889999999999999865321100                   


Q ss_pred             -EEeeccCCCCeeEEEeCCC-----------------C---------CCCceecccccCCCceeEEeecCCcEEEEEEeC
Q 036510          142 -SRIDQAHPVGVTSVSWAPS-----------------T---------APGALVGSGFLDPVQKLCSGGCDNTVKVWKLYN  194 (288)
Q Consensus       142 -~~~~~~~~~~v~~i~~~p~-----------------~---------~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  194 (288)
                       ......|...+........                 .         .........+......+++++.|++|++||+.+
T Consensus       153 ~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~  232 (355)
T d1nexb2         153 FVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN  232 (355)
T ss_dssp             EEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred             eeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccc
Confidence             0011112222222111110                 0         000011112234457899999999999999987


Q ss_pred             CceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEE-EEeecCCCEE
Q 036510          195 GIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYR-VSWSLTGNIL  273 (288)
Q Consensus       195 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~-~~~spdg~~l  273 (288)
                      +    .++..+.+|...|.++.|+|      ++|++|+.|++|++||++...     ..+..+...+.+ +.|+|+++++
T Consensus       233 ~----~~~~~~~~h~~~v~~~~~~~------~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l  297 (355)
T d1nexb2         233 G----ELMYTLQGHTALVGLLRLSD------KFLVSAAADGSIRGWDANDYS-----RKFSYHHTNLSAITTFYVSDNIL  297 (355)
T ss_dssp             C----CEEEEECCCSSCCCEEEECS------SEEEEECTTSEEEEEETTTCC-----EEEEEECTTCCCCCEEEECSSEE
T ss_pred             c----cccccccccccccccccccc------ceeeeeecccccccccccccc-----eecccccCCceEEEEEcCCCCEE
Confidence            6    35567789999999999986      479999999999999987532     233344455555 4567888877


Q ss_pred             EEEeCCCcEEEeEcC
Q 036510          274 AVADGNNNVTLWEEA  288 (288)
Q Consensus       274 ~s~~~d~~v~~w~~~  288 (288)
                      ++| .|++|+|||++
T Consensus       298 ~~g-~d~~i~vwd~~  311 (355)
T d1nexb2         298 VSG-SENQFNIYNLR  311 (355)
T ss_dssp             EEE-ETTEEEEEETT
T ss_pred             EEE-eCCEEEEEECC
Confidence            766 58999999953

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.2e-33  Score=237.61  Aligned_cols=250  Identities=16%  Similarity=0.192  Sum_probs=188.2

Q ss_pred             ceEEEEEcCCCCEEEEeeCCC-cEEEEEeCCCCceeeEEEeccc-cCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510           13 TVHDVAMDYYGKRLATASSDY-SIKIIGVGNNTSQHLAKLSGHK-GAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN   90 (288)
Q Consensus        13 ~v~~~~~s~~g~~l~s~~~d~-~i~lwd~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~   90 (288)
                      .+.+++|+|+|+.|+.++.+. .++.|+........+..+.+|. ..|++++|+|..++.+|++|+.||+|+|||.....
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            457889999999999887654 3566665444445577888885 67999999876678999999999999999986433


Q ss_pred             ce-----EEeEEeecCCCceeEEEeccCCCCeEEEEE--eCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCC
Q 036510           91 EW-----IKDHVFEDHKSSVNSIDWAPHELGLCLACG--SSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAP  163 (288)
Q Consensus        91 ~~-----~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg--~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~  163 (288)
                      ..     .....+..|.++|.+++|+|++  ..++++  +.++.+.+|+...+.   ......+|...|.++.|+|++. 
T Consensus        99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~--~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~-  172 (325)
T d1pgua1          99 ESNSVEVNVKSEFQVLAGPISDISWDFEG--RRLCVVGEGRDNFGVFISWDSGN---SLGEVSGHSQRINACHLKQSRP-  172 (325)
T ss_dssp             GGTEEEEEEEEEEECCSSCEEEEEECTTS--SEEEEEECCSSCSEEEEETTTCC---EEEECCSCSSCEEEEEECSSSS-
T ss_pred             ceeeeecccccccccccCcEEEEEECCCC--CccceeeccccceEEEEeecccc---cceeeeeccccccccccccccc-
Confidence            21     1122345788999999999984  444444  457789999987653   2344568999999999999873 


Q ss_pred             CceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEee
Q 036510          164 GALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA  243 (288)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~  243 (288)
                                  .++++++.|+.+++||+...... ........|...|.+++|+|+.   +.+|++++.|+.|++||++
T Consensus       173 ------------~~~~~~~~d~~v~~~d~~~~~~~-~~~~~~~~~~~~v~~v~~~pd~---~~~l~s~~~d~~i~iwd~~  236 (325)
T d1pgua1         173 ------------MRSMTVGDDGSVVFYQGPPFKFS-ASDRTHHKQGSFVRDVEFSPDS---GEFVITVGSDRKISCFDGK  236 (325)
T ss_dssp             ------------CEEEEEETTTEEEEEETTTBEEE-EEECSSSCTTCCEEEEEECSTT---CCEEEEEETTCCEEEEETT
T ss_pred             ------------ceEEEeecccccccccccccccc-eecccccCCCCccEEeeecccc---ceeccccccccceeeeeec
Confidence                        45789999999999998654322 2334556788899999999974   4689999999999999986


Q ss_pred             cCCCcccceEeeccccCeEEEEee---cCCCEEEEEeCCCcEEEeEc
Q 036510          244 REGDQWEGKVLHDFKTPVYRVSWS---LTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       244 ~~~~~~~~~~~~~~~~~i~~~~~s---pdg~~l~s~~~d~~v~~w~~  287 (288)
                      ...   ....+..|..++..+.|+   |||++|++++.|++|+|||+
T Consensus       237 ~~~---~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~  280 (325)
T d1pgua1         237 SGE---FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV  280 (325)
T ss_dssp             TCC---EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEET
T ss_pred             ccc---ccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEEC
Confidence            532   223445555566555555   78999999999999999995

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-32  Score=225.11  Aligned_cols=238  Identities=21%  Similarity=0.415  Sum_probs=181.7

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      ....|...|++++  ++|++|||||.|++|+|||+..  ++++.++.+|.+.|++++|.    +++|++|+.|++|++|+
T Consensus        10 ~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~--~~~~~~l~~H~~~V~~v~~~----~~~l~s~s~D~~i~~~~   81 (293)
T d1p22a2          10 CRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNT--LECKRILTGHTGSVLCLQYD----ERVIITGSSDSTVRVWD   81 (293)
T ss_dssp             CCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSS--CCEEEEECCCSSCEEEEECC----SSEEEEEETTSCEEEEE
T ss_pred             ccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCC--CcEEEEEecCCCCEeeeecc----cceeecccccccccccc
Confidence            3457888998765  5799999999999999999853  47789999999999999973    67999999999999999


Q ss_pred             cCCCCceE----------------------------------------EeEEeecCCCceeEEEeccCCCCeEEEEEeCC
Q 036510           86 EGNSNEWI----------------------------------------KDHVFEDHKSSVNSIDWAPHELGLCLACGSSD  125 (288)
Q Consensus        86 ~~~~~~~~----------------------------------------~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d  125 (288)
                      +..+....                                        ....+..|...+.++.+.+.    .+++++.|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~s~d  157 (293)
T d1p22a2          82 VNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK----YIVSASGD  157 (293)
T ss_dssp             SSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT----EEEEEETT
T ss_pred             cccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceeccc----ccccccCC
Confidence            75432100                                        01122346666777766543    46788999


Q ss_pred             CcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeecc
Q 036510          126 GNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPAL  205 (288)
Q Consensus       126 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  205 (288)
                      +.|++||.+....   .....++...+..+.+++                ..+++++.|++|++||+++.    +.+...
T Consensus       158 ~~i~~~d~~~~~~---~~~~~~~~~~v~~~~~~~----------------~~l~~~~~dg~i~i~d~~~~----~~~~~~  214 (293)
T d1p22a2         158 RTIKVWNTSTCEF---VRTLNGHKRGIACLQYRD----------------RLVVSGSSDNTIRLWDIECG----ACLRVL  214 (293)
T ss_dssp             SEEEEEETTTCCE---EEEEECCSSCEEEEEEET----------------TEEEEEETTSCEEEEETTTC----CEEEEE
T ss_pred             CceeeecCCCCcE---EEEEcccccccccccCCC----------------CeEEEecCCCEEEEEecccc----eeeeee
Confidence            9999999986542   334457777788887764                46899999999999999875    344556


Q ss_pred             ccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCc------ccceEeeccccCeEEEEeecCCCEEEEEeCC
Q 036510          206 QMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ------WEGKVLHDFKTPVYRVSWSLTGNILAVADGN  279 (288)
Q Consensus       206 ~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~------~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d  279 (288)
                      .+|...|..+.+.      ..+|++|+.|+.|++||+......      .....+..|.++|++++|  |+++|++|+.|
T Consensus       215 ~~~~~~v~~~~~~------~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~D  286 (293)
T d1p22a2         215 EGHEELVRCIRFD------NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHD  286 (293)
T ss_dssp             CCCSSCEEEEECC------SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSS
T ss_pred             cccceeeeecccc------ceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecC
Confidence            7788888775543      358999999999999998653211      122345677889999998  57889999999


Q ss_pred             CcEEEeE
Q 036510          280 NNVTLWE  286 (288)
Q Consensus       280 ~~v~~w~  286 (288)
                      ++|+|||
T Consensus       287 g~i~iWD  293 (293)
T d1p22a2         287 DTILIWD  293 (293)
T ss_dssp             SEEEEEC
T ss_pred             CEEEEeC
Confidence            9999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-32  Score=228.47  Aligned_cols=243  Identities=16%  Similarity=0.192  Sum_probs=177.7

Q ss_pred             CccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510            4 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVII   83 (288)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i   83 (288)
                      .+.+.||+++|++++|+|    |+||+.|++|++||+..       ...+|...|.++.+++   +..+++++.|+++++
T Consensus         6 i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~-------~~~~h~~~V~~~~~~~---~~~~~s~s~D~~v~~   71 (287)
T d1pgua2           6 LKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS-------MHQDHSNLIVSLDNSK---AQEYSSISWDDTLKV   71 (287)
T ss_dssp             EEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTE-------EECCCCSCEEEEECCS---TTCCEEEETTTEEEE
T ss_pred             eEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCC-------CCCCCCCCEEEEEecC---CCeEEEEeecccccc
Confidence            456789999999999987    99999999999998732       1357999999999864   567899999999999


Q ss_pred             eecCCCC---ceE----------------------------EeEEeecCCCceeEEEeccCCCCeEEEEEeCC-CcEEEE
Q 036510           84 WKEGNSN---EWI----------------------------KDHVFEDHKSSVNSIDWAPHELGLCLACGSSD-GNISVF  131 (288)
Q Consensus        84 wd~~~~~---~~~----------------------------~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d-~~i~i~  131 (288)
                      |+.....   ...                            ....+. +...+  .+++|+  +..+++++.+ +.+++|
T Consensus        72 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~--~~~~~v~~~~~~~v~~~  146 (287)
T d1pgua2          72 NGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPG--SAVSLS--QNYVAVGLEEGNTIQVF  146 (287)
T ss_dssp             TTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCE--EEEEEC--SSEEEEEETTTSCEEEE
T ss_pred             ccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeecc-cccee--eeeecc--Ccceeeeccccceeeee
Confidence            9863210   000                            000111 11222  334555  3345555555 579999


Q ss_pred             eecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcc
Q 036510          132 TARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDW  211 (288)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~  211 (288)
                      ++....  ........|...+.++.|+|++              .+|++|+.|+.|++||+.++..   ....+.+|..+
T Consensus       147 ~~~~~~--~~~~~~~~~~~~v~~~~~s~~~--------------~~l~~g~~dg~i~i~d~~~~~~---~~~~~~~h~~~  207 (287)
T d1pgua2         147 KLSDLE--VSFDLKTPLRAKPSYISISPSE--------------TYIAAGDVMGKILLYDLQSREV---KTSRWAFRTSK  207 (287)
T ss_dssp             ETTEEE--EEEECSSCCSSCEEEEEECTTS--------------SEEEEEETTSCEEEEETTTTEE---EECCSCCCSSC
T ss_pred             eccccc--eeeeeeeccCCceeEEEeccCc--------------cccccccccccccceeeccccc---ccccccccccc
Confidence            975421  1122233567789999999987              7899999999999999877631   22345789999


Q ss_pred             eEEEEecCCCC------CCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEe
Q 036510          212 VRDVAWAPNLG------LPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLW  285 (288)
Q Consensus       212 V~~v~~sp~~~------~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w  285 (288)
                      |.+++|+|...      ..+.+||+|+.|++|++||++....  .......|...|++++|+|++ .|++++.|++|++|
T Consensus       208 v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~--~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW  284 (287)
T d1pgua2         208 INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK--IIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRW  284 (287)
T ss_dssp             EEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC--CEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEE
T ss_pred             cceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCe--EEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEE
Confidence            99999999642      2357899999999999999875322  224445678899999999987 57889999999999


Q ss_pred             Ec
Q 036510          286 EE  287 (288)
Q Consensus       286 ~~  287 (288)
                      ++
T Consensus       285 ~i  286 (287)
T d1pgua2         285 NV  286 (287)
T ss_dssp             EE
T ss_pred             EE
Confidence            95

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.9e-31  Score=223.36  Aligned_cols=227  Identities=20%  Similarity=0.220  Sum_probs=172.0

Q ss_pred             eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEe-ecCCCceeEEEeccCCCCeEEEEEeC
Q 036510           46 QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVF-EDHKSSVNSIDWAPHELGLCLACGSS  124 (288)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~~l~sg~~  124 (288)
                      +..+.+.||...|++++|+++  +++|+||+.|++|++||+.++.   ....+ ..|...|++++|+|+  +. +++++.
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~d--g~~l~s~s~Dg~v~vWd~~~~~---~~~~~~~~h~~~v~~v~~~~~--g~-~~~~~~   74 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSAD--GKTLFSADAEGHINSWDISTGI---SNRVFPDVHATMITGIKTTSK--GD-LFTVSW   74 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTCC---EEECSSCSCSSCEEEEEECTT--SC-EEEEET
T ss_pred             ccceEcCCCCCCcEEEEECCC--CCEEEEEcCCCeEEEEECCCCc---EEEEEcCCCCCcEEEEEeecc--ce-eecccc
Confidence            567889999999999999864  8999999999999999998765   23344 468999999999997  44 556778


Q ss_pred             CCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCce-----------------------ecccccCCCceeEEe
Q 036510          125 DGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGAL-----------------------VGSGFLDPVQKLCSG  181 (288)
Q Consensus       125 d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~-----------------------~~~~~~~~~~~l~s~  181 (288)
                      |+.+++|+...............+...+.++.|+|++.....                       ....+..++++|++|
T Consensus        75 d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g  154 (299)
T d1nr0a2          75 DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVG  154 (299)
T ss_dssp             TTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEE
T ss_pred             eeeEEEeccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999997643211111222346667888888887642110                       001223456789999


Q ss_pred             ecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCe
Q 036510          182 GCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPV  261 (288)
Q Consensus       182 ~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i  261 (288)
                      +.|+.|++||+.++...   ......|..+|.+++|+|+.    .+|++++.|+.|++||+..............|..+|
T Consensus       155 ~~dg~i~~~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~----~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v  227 (299)
T d1nr0a2         155 GQDSKVHVYKLSGASVS---EVKTIVHPAEITSVAFSNNG----AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKV  227 (299)
T ss_dssp             ETTSEEEEEEEETTEEE---EEEEEECSSCEEEEEECTTS----SEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCE
T ss_pred             ccccccccccccccccc---cccccccccccccccccccc----cccccccccccccccccccccccccccccccccccc
Confidence            99999999999876311   11235688999999999974    789999999999999987643222223334567899


Q ss_pred             EEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          262 YRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       262 ~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ++++|+|+|++|++|+.|++|+|||+
T Consensus       228 ~~l~~s~~~~~l~sgs~dg~i~iwd~  253 (299)
T d1nr0a2         228 ACVSWSPDNVRLATGSLDNSVIVWNM  253 (299)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             ccccccccccceEEEcCCCEEEEEEC
Confidence            99999999999999999999999995

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-31  Score=233.61  Aligned_cols=261  Identities=14%  Similarity=0.147  Sum_probs=178.8

Q ss_pred             ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCC----ceeeEEEeccccCeEEEEe-----cCCCCCCEEEEeeC
Q 036510            7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNT----SQHLAKLSGHKGAVWEVAW-----AHPKFGSILASCSF   77 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~----~~~~~~~~~h~~~v~~~~~-----~~~~~~~~l~s~s~   77 (288)
                      ..+|++.|++++++  +++|+|+|.|++|+|||.....    .........|...+..+..     ....++.++++++.
T Consensus        10 ~~~H~~~I~~v~~~--~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~   87 (393)
T d1sq9a_          10 GKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF   87 (393)
T ss_dssp             SSCSSSCEEEEEEC--SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred             CCcccCccEEEEEe--CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeC
Confidence            45999999999987  4799999999999999964321    1123333445444332221     11113457889999


Q ss_pred             CCcEEEeecCCCCce--EEeEEe-----ecCCCceeEEEeccCCC---CeEEEEEeCCCcEEEEeecCCCC---------
Q 036510           78 DGTVIIWKEGNSNEW--IKDHVF-----EDHKSSVNSIDWAPHEL---GLCLACGSSDGNISVFTARADGG---------  138 (288)
Q Consensus        78 d~~v~iwd~~~~~~~--~~~~~~-----~~h~~~v~~l~~~p~~~---~~~l~sg~~d~~i~i~d~~~~~~---------  138 (288)
                      ||+|++|++......  ......     ..+...+..++|.++..   +.++++++.|+++++|++.....         
T Consensus        88 dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~  167 (393)
T d1sq9a_          88 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW  167 (393)
T ss_dssp             TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred             CCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeee
Confidence            999999987543221  111111     12455678888877642   46789999999999999853211         


Q ss_pred             --e-ee---EEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCce--eeeeeeccccCCc
Q 036510          139 --W-DT---SRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIW--KMDCFPALQMHTD  210 (288)
Q Consensus       139 --~-~~---~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~h~~  210 (288)
                        . ..   ......+...+.+++|+|+               .+|++|+.|++|+|||+.++..  ..+....+.+|..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~v~~s~d---------------g~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~  232 (393)
T d1sq9a_         168 SPTLELQGTVESPMTPSQFATSVDISER---------------GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN  232 (393)
T ss_dssp             CCEEEEEEEECCSSSSCCCCCEEEECTT---------------SEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCC
T ss_pred             ccceecccceecccCCCCcEEEEEECCC---------------CEEEEEeCCCcEEEEeecccccccccccccccccccc
Confidence              0 00   0111234556788888886               3689999999999999987632  2234456678999


Q ss_pred             ceEEEEecCCCCCCCcEEEEEeCCCc---EEEEEeecCCCcc----------cceEeeccccCeEEEEeecCCCEEEEEe
Q 036510          211 WVRDVAWAPNLGLPKSTIASASEDGK---VIIWTVAREGDQW----------EGKVLHDFKTPVYRVSWSLTGNILAVAD  277 (288)
Q Consensus       211 ~V~~v~~sp~~~~~~~~l~s~s~D~~---i~iw~~~~~~~~~----------~~~~~~~~~~~i~~~~~spdg~~l~s~~  277 (288)
                      +|++++|+|++    ++|++|+.|++   |++||++......          ......+|.+.|++++|+|||++|++|+
T Consensus       233 ~V~~l~~spdg----~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s  308 (393)
T d1sq9a_         233 SIRSVKFSPQG----SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG  308 (393)
T ss_dssp             CEEEEEECSST----TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE
T ss_pred             eEEEccccccc----ceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEEC
Confidence            99999999984    78999999985   8999987532110          0112246788999999999999999999


Q ss_pred             CCCcEEEeEcC
Q 036510          278 GNNNVTLWEEA  288 (288)
Q Consensus       278 ~d~~v~~w~~~  288 (288)
                      .|++|+|||++
T Consensus       309 ~D~~v~vWd~~  319 (393)
T d1sq9a_         309 WDGKLRFWDVK  319 (393)
T ss_dssp             TTSEEEEEETT
T ss_pred             CCCEEEEEECC
Confidence            99999999963

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-31  Score=225.03  Aligned_cols=263  Identities=17%  Similarity=0.132  Sum_probs=181.3

Q ss_pred             CCCCccccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCc-eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCC
Q 036510            1 MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTS-QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDG   79 (288)
Q Consensus         1 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~   79 (288)
                      |..-++..+|++.|++|+|+|+|++||+||.|++|+|||+..... ..+....+|..+|.+++|+++ .+.+|++|+.|+
T Consensus         1 ~~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~-~~~~l~sg~~d~   79 (342)
T d1yfqa_           1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN-TDLQIYVGTVQG   79 (342)
T ss_dssp             CEEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES-SSEEEEEEETTS
T ss_pred             CCeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCC-CCCEEEEccccc
Confidence            445567889999999999999999999999999999999864322 234445579999999999864 467899999999


Q ss_pred             cEEEeecCCCCceEEeEEeecCCCc-eeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeee-EEeeccC--CCCeeEE
Q 036510           80 TVIIWKEGNSNEWIKDHVFEDHKSS-VNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDT-SRIDQAH--PVGVTSV  155 (288)
Q Consensus        80 ~v~iwd~~~~~~~~~~~~~~~h~~~-v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~-~~~~~~~--~~~v~~i  155 (288)
                      +|++|+.......   .....+... .....+.++  ...+++++.|+.+++||++....... ......+  ......+
T Consensus        80 ~v~~w~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (342)
T d1yfqa_          80 EILKVDLIGSPSF---QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIF  154 (342)
T ss_dssp             CEEEECSSSSSSE---EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEE
T ss_pred             ceeeeeccccccc---ccccccccccccccccccc--cccccccccccccceeeccccccceeeecccccccccceeeee
Confidence            9999998765532   222223333 334444444  45688999999999999875432211 1111122  1122233


Q ss_pred             EeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCC
Q 036510          156 SWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDG  235 (288)
Q Consensus       156 ~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~  235 (288)
                      .+.+..              ..+++++.|+.|++||+........ ......+...+.++.+.|..   +..+++++.|+
T Consensus       155 ~~~~~~--------------~~~~~~~~d~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg  216 (342)
T d1yfqa_         155 TMDTNS--------------SRLIVGMNNSQVQWFRLPLCEDDNG-TIEESGLKYQIRDVALLPKE---QEGYACSSIDG  216 (342)
T ss_dssp             EEEECS--------------SEEEEEESTTEEEEEESSCCTTCCC-EEEECSCSSCEEEEEECSGG---GCEEEEEETTS
T ss_pred             eeeccC--------------CceeeecCCCcEEEEecccCcccce-eeeecccccceeeeEeecCC---CCEEEeecCCC
Confidence            333333              6789999999999999876532111 11223344456666666653   46899999999


Q ss_pred             cEEEEEeecCCCcc---cceEe---------eccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          236 KVIIWTVAREGDQW---EGKVL---------HDFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       236 ~i~iw~~~~~~~~~---~~~~~---------~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      .+.+|+........   .....         ..+...|++++|+|++++||+|+.||+|+|||.
T Consensus       217 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~  280 (342)
T d1yfqa_         217 RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL  280 (342)
T ss_dssp             EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred             eEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEEC
Confidence            99999986542111   00111         123357899999999999999999999999995

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.98  E-value=2.6e-30  Score=218.73  Aligned_cols=224  Identities=23%  Similarity=0.431  Sum_probs=168.3

Q ss_pred             eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC
Q 036510           46 QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD  125 (288)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d  125 (288)
                      +..++|.||.+.|++++|+++  +.+|+||+.||+|+|||+.++.   ....+..|..+|.+++|+|+  +.++++|+.|
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~--~~~l~sgs~Dg~v~iWd~~~~~---~~~~~~~~~~~v~~v~~~~~--~~~l~~~~~d  118 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTD--SRLLVSASQDGKLIIWDSYTTN---KVHAIPLRSSWVMTCAYAPS--GNYVACGGLD  118 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTT--SSEEEEEETTTEEEEEETTTTE---EEEEEECSCSCEEEEEECTT--SSEEEEEETT
T ss_pred             eeeEEECCCCCCEEEEEECCC--CCEEEEEECCCceeeeecccce---eEEEEecccccEEeeEeecc--ceeeeeeccc
Confidence            456789999999999999864  8999999999999999997664   45678889999999999998  6789999999


Q ss_pred             CcEEEEeecCCCCe-eeEEeeccCCCCeeEEEeCCCCCC---------------------------CceecccccCCCce
Q 036510          126 GNISVFTARADGGW-DTSRIDQAHPVGVTSVSWAPSTAP---------------------------GALVGSGFLDPVQK  177 (288)
Q Consensus       126 ~~i~i~d~~~~~~~-~~~~~~~~~~~~v~~i~~~p~~~~---------------------------~~~~~~~~~~~~~~  177 (288)
                      +.+++|+....... .......+|..........+....                           .............+
T Consensus       119 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (340)
T d1tbga_         119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL  198 (340)
T ss_dssp             CCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSE
T ss_pred             ceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccce
Confidence            99999997653221 112223344433332222211100                           00011112334578


Q ss_pred             eEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEe--e
Q 036510          178 LCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVL--H  255 (288)
Q Consensus       178 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~--~  255 (288)
                      +++++.|+.|++||++++    +++..+.+|...|.+++|+|++    .+|++|+.|+.|++|++.....   ....  .
T Consensus       199 ~~~~~~d~~v~i~d~~~~----~~~~~~~~h~~~i~~v~~~p~~----~~l~s~s~d~~i~~~~~~~~~~---~~~~~~~  267 (340)
T d1tbga_         199 FVSGACDASAKLWDVREG----MCRQTFTGHESDINAICFFPNG----NAFATGSDDATCRLFDLRADQE---LMTYSHD  267 (340)
T ss_dssp             EEEEETTTEEEEEETTTT----EEEEEECCCSSCEEEEEECTTS----SEEEEEETTSCEEEEETTTTEE---EEEECCT
T ss_pred             eEEeecCceEEEEECCCC----cEEEEEeCCCCCeEEEEECCCC----CEEEEEeCCCeEEEEeeccccc---ccccccc
Confidence            899999999999999876    4566778999999999999974    7899999999999999875321   1111  2


Q ss_pred             ccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          256 DFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       256 ~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      .+...|.+++|+|+|++|++|+.|++|+|||.
T Consensus       268 ~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~  299 (340)
T d1tbga_         268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDA  299 (340)
T ss_dssp             TCCSCEEEEEECSSSCEEEEEETTSCEEEEET
T ss_pred             cccCceEEEEECCCCCEEEEEECCCEEEEEEC
Confidence            33467999999999999999999999999995

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=7.8e-29  Score=206.55  Aligned_cols=204  Identities=26%  Similarity=0.425  Sum_probs=175.6

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      ...+|...+.++.|+++++.+++++.|+.+++||+..+  +.+..+.+|...+..++|+++  +.+|++++.|+.|++|+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~d~~v~~~~  171 (317)
T d1vyhc1          96 TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG--YCVKTFTGHREWVRMVRPNQD--GTLIASCSNDQTVRVWV  171 (317)
T ss_dssp             CCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC--CEEEEEECCSSCEEEEEECTT--SSEEEEEETTSCEEEEE
T ss_pred             ccccccccceeeeccCCCceEEeeccCcceeEeecccc--eeeeEEccCCCcceeeecccC--CCEEEEEeCCCeEEEEe
Confidence            34578899999999999999999999999999998543  568889999999999999864  88999999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCC------------------CeEEEEEeCCCcEEEEeecCCCCeeeEEeecc
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHEL------------------GLCLACGSSDGNISVFTARADGGWDTSRIDQA  147 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~------------------~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~  147 (288)
                      ..+..   ....+..|...+.++.|+|+..                  +.++++|+.|+.|++|+.+++.   ......+
T Consensus       172 ~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~---~~~~~~~  245 (317)
T d1vyhc1         172 VATKE---CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM---CLMTLVG  245 (317)
T ss_dssp             TTTCC---EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE---EEEEEEC
T ss_pred             eccce---eeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCc---EEEEEeC
Confidence            97765   3456778999999999988632                  2468899999999999998653   2344568


Q ss_pred             CCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcE
Q 036510          148 HPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKST  227 (288)
Q Consensus       148 ~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~  227 (288)
                      |...|.++.|+|++              ++|++|+.|+.|++||+.++    +++..+.+|...|++++|+|++    .+
T Consensus       246 ~~~~v~~~~~~~~~--------------~~l~s~~~dg~i~iwd~~~~----~~~~~~~~h~~~V~~~~~s~~~----~~  303 (317)
T d1vyhc1         246 HDNWVRGVLFHSGG--------------KFILSCADDKTLRVWDYKNK----RCMKTLNAHEHFVTSLDFHKTA----PY  303 (317)
T ss_dssp             CSSCEEEEEECSSS--------------SCEEEEETTTEEEEECCTTS----CCCEEEECCSSCEEEEEECSSS----SC
T ss_pred             CCCCEEEEEECCCC--------------CEEEEEECCCeEEEEECCCC----cEEEEEcCCCCCEEEEEEcCCC----CE
Confidence            99999999999987              78999999999999999876    4567788999999999999984    68


Q ss_pred             EEEEeCCCcEEEEE
Q 036510          228 IASASEDGKVIIWT  241 (288)
Q Consensus       228 l~s~s~D~~i~iw~  241 (288)
                      |++|+.|++|+|||
T Consensus       304 l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         304 VVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEEETTSEEEEEC
T ss_pred             EEEEeCCCeEEEeC
Confidence            99999999999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=9.5e-29  Score=209.48  Aligned_cols=241  Identities=12%  Similarity=0.131  Sum_probs=169.0

Q ss_pred             cccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEec--cccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510            6 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSG--HKGAVWEVAWAHPKFGSILASCSFDGTVII   83 (288)
Q Consensus         6 ~~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i   83 (288)
                      .+.+|++.|.+++|+++ ++|+||+.|++|++|+....  +.......  +........+.+  ++.++++++.|++|++
T Consensus        48 ~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~i  122 (355)
T d1nexb2          48 QLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKG--CCTHVFEGHNSTVRCLDIVEYK--NIKYIVTGSRDNTLHV  122 (355)
T ss_dssp             EEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTT--EEEEEECCCSSCEEEEEEEEET--TEEEEEEEETTSEEEE
T ss_pred             EEECCCCCEEEEEEcCC-CEEEEEeccccccccccccc--cccccccccccccccccccccc--ccceeeeecCCCcEEE
Confidence            45689999999999985 58999999999999998643  33323222  223333444443  3677888888888888


Q ss_pred             eecCCCCc------------------------------------------------------------eEEeEEeecCCC
Q 036510           84 WKEGNSNE------------------------------------------------------------WIKDHVFEDHKS  103 (288)
Q Consensus        84 wd~~~~~~------------------------------------------------------------~~~~~~~~~h~~  103 (288)
                      |++.....                                                            .........+..
T Consensus       123 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~  202 (355)
T d1nexb2         123 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD  202 (355)
T ss_dssp             EECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             EEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeecccc
Confidence            88643210                                                            001112334666


Q ss_pred             ceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeec
Q 036510          104 SVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC  183 (288)
Q Consensus       104 ~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~  183 (288)
                      .+.++.|+|+  +.++++++.|+.|++|+.+++.   .....++|...|.++.|++                ++|++|+.
T Consensus       203 ~~~~~~~~~~--~~~~~~~~~d~~i~i~d~~~~~---~~~~~~~h~~~v~~~~~~~----------------~~l~~~~~  261 (355)
T d1nexb2         203 RIYSTIYDHE--RKRCISASMDTTIRIWDLENGE---LMYTLQGHTALVGLLRLSD----------------KFLVSAAA  261 (355)
T ss_dssp             CEEEEEEETT--TTEEEEEETTSCEEEEETTTCC---EEEEECCCSSCCCEEEECS----------------SEEEEECT
T ss_pred             cccccccccc--ceeeecccccceEEeeeccccc---ccccccccccccccccccc----------------ceeeeeec
Confidence            7788888887  5678899999999999998653   2345678999999999875                56999999


Q ss_pred             CCcEEEEEEeCCceeeeeeeccccCCcceEEEEe-cCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeE
Q 036510          184 DNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAW-APNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVY  262 (288)
Q Consensus       184 d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~-sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~  262 (288)
                      |++|++||+.+..      ..+..|...+.++.+ +|+    +.+| +++.|++|++||++..+.  ....+.+|..+|.
T Consensus       262 dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~----~~~l-~~g~d~~i~vwd~~tg~~--~~~~~~~~~~~V~  328 (355)
T d1nexb2         262 DGSIRGWDANDYS------RKFSYHHTNLSAITTFYVS----DNIL-VSGSENQFNIYNLRSGKL--VHANILKDADQIW  328 (355)
T ss_dssp             TSEEEEEETTTCC------EEEEEECTTCCCCCEEEEC----SSEE-EEEETTEEEEEETTTCCB--CCSCTTTTCSEEE
T ss_pred             ccccccccccccc------eecccccCCceEEEEEcCC----CCEE-EEEeCCEEEEEECCCCCE--EEEEecCCCCCEE
Confidence            9999999987653      223456666666644 454    3445 455689999999875421  1123345678899


Q ss_pred             EEEeecCCCEEEEEeCCCcEEEeE
Q 036510          263 RVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       263 ~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      +++|+|+ .++++++.||+++||.
T Consensus       329 ~v~~~~~-~~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         329 SVNFKGK-TLVAAVEKDGQSFLEI  351 (355)
T ss_dssp             EEEEETT-EEEEEEESSSCEEEEE
T ss_pred             EEEEcCC-eEEEEEECCCcEEEEE
Confidence            9999997 5788889999966654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.3e-28  Score=213.19  Aligned_cols=242  Identities=18%  Similarity=0.218  Sum_probs=168.9

Q ss_pred             CCEEEEeeCCCcEEEEEeCCCCc-eeeE--E-----EeccccCeEEEEecCCC---CCCEEEEeeCCCcEEEeecCCCC-
Q 036510           23 GKRLATASSDYSIKIIGVGNNTS-QHLA--K-----LSGHKGAVWEVAWAHPK---FGSILASCSFDGTVIIWKEGNSN-   90 (288)
Q Consensus        23 g~~l~s~~~d~~i~lwd~~~~~~-~~~~--~-----~~~h~~~v~~~~~~~~~---~~~~l~s~s~d~~v~iwd~~~~~-   90 (288)
                      +.++++++.|++|++|++..... ..+.  .     ...+...++.++|.+..   .+.++++++.|+++++|++.... 
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~  158 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  158 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             CcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCc
Confidence            45788999999999998743221 1111  1     12355678888887532   25789999999999999974211 


Q ss_pred             ----------ce-EE---eEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeE---EeeccCCCCee
Q 036510           91 ----------EW-IK---DHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTS---RIDQAHPVGVT  153 (288)
Q Consensus        91 ----------~~-~~---~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~---~~~~~~~~~v~  153 (288)
                                .. ..   ......+...+++++|+|+  + ++++|+.|++|++||++++......   ..+.+|...|.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d--g-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~  235 (393)
T d1sq9a_         159 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER--G-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR  235 (393)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT--S-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEE
T ss_pred             ccceeeeeeccceecccceecccCCCCcEEEEEECCC--C-EEEEEeCCCcEEEEeecccccccccccccccccccceEE
Confidence                      00 00   1112235566899999997  4 6899999999999999875433222   23457899999


Q ss_pred             EEEeCCCCCCCceecccccCCCceeEEeecCCc---EEEEEEeCCceee---------eeeeccccCCcceEEEEecCCC
Q 036510          154 SVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNT---VKVWKLYNGIWKM---------DCFPALQMHTDWVRDVAWAPNL  221 (288)
Q Consensus       154 ~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~---i~iwd~~~~~~~~---------~~~~~~~~h~~~V~~v~~sp~~  221 (288)
                      +++|+|++              ++|++|+.|++   |++||+.++....         .....+.+|..+|++++|+|++
T Consensus       236 ~l~~spdg--------------~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~  301 (393)
T d1sq9a_         236 SVKFSPQG--------------SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG  301 (393)
T ss_dssp             EEEECSST--------------TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSS
T ss_pred             Eccccccc--------------ceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCC
Confidence            99999987              78999999985   8999987763211         1122346899999999999984


Q ss_pred             CCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccc---------------------cCeEEEEeecCC----------
Q 036510          222 GLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFK---------------------TPVYRVSWSLTG----------  270 (288)
Q Consensus       222 ~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~---------------------~~i~~~~~spdg----------  270 (288)
                          .+|+|||.|++|++||++..+   ....+.+|.                     ..+..+.|.+++          
T Consensus       302 ----~~l~S~s~D~~v~vWd~~~g~---~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (393)
T d1sq9a_         302 ----ETLCSAGWDGKLRFWDVKTKE---RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLN  374 (393)
T ss_dssp             ----SEEEEEETTSEEEEEETTTTE---EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTS
T ss_pred             ----CeeEEECCCCEEEEEECCCCC---EEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCC
Confidence                789999999999999987532   112222222                     246677777654          


Q ss_pred             CEEEEEeCCCcEEEeEcC
Q 036510          271 NILAVADGNNNVTLWEEA  288 (288)
Q Consensus       271 ~~l~s~~~d~~v~~w~~~  288 (288)
                      +.|++++.|+.||+|+.|
T Consensus       375 ~~~~~~~~d~~ir~~~~~  392 (393)
T d1sq9a_         375 ESLCCVCLDRSIRWFREA  392 (393)
T ss_dssp             CEEEEEETTTEEEEEEEE
T ss_pred             CEEEEEEcCCeEEEEeCC
Confidence            348899999999999865

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=7.8e-27  Score=196.56  Aligned_cols=215  Identities=19%  Similarity=0.300  Sum_probs=148.0

Q ss_pred             ceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeC
Q 036510           45 SQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSS  124 (288)
Q Consensus        45 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~  124 (288)
                      .++...|.||++.|.+ +++++  |++|+|||.|++|+|||+.++.   ...++.+|...|.+++|+|+    ++++|+.
T Consensus         6 ~~~~~~l~GH~~~V~s-~~~~~--g~~l~sgs~Dg~i~vWd~~~~~---~~~~~~~h~~~V~~v~~~~~----~l~s~s~   75 (342)
T d2ovrb2           6 LKSPKVLKGHDDHVIT-CLQFC--GNRIVSGSDDNTLKVWSAVTGK---CLRTLVGHTGGVWSSQMRDN----IIISGST   75 (342)
T ss_dssp             CCCCEEEECSTTSCEE-EEEEE--TTEEEEEETTSCEEEEETTTCC---EEEECCCCSSCEEEEEEETT----EEEEEET
T ss_pred             CCcCEEECCcCCceEE-EEEEC--CCEEEEEeCCCeEEEEECCCCC---EEEEEeCCCCCEEEEEeCCC----cccccee
Confidence            3567789999999865 23332  7899999999999999998765   45678899999999999874    6899999


Q ss_pred             CCcEEEEeecCCCCeeeEEeeccCCCCeeEEE-----------------eC---------------------CCCC----
Q 036510          125 DGNISVFTARADGGWDTSRIDQAHPVGVTSVS-----------------WA---------------------PSTA----  162 (288)
Q Consensus       125 d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~-----------------~~---------------------p~~~----  162 (288)
                      |+.+++|+........   ....+...+....                 |.                     +...    
T Consensus        76 D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (342)
T d2ovrb2          76 DRTLKVWNAETGECIH---TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVS  152 (342)
T ss_dssp             TSCEEEEETTTTEEEE---EECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEE
T ss_pred             ccccccccccccccee---cccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeee
Confidence            9999999876432100   0000000000000                 00                     0000    


Q ss_pred             ---CCce--e-----------------cccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCC
Q 036510          163 ---PGAL--V-----------------GSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPN  220 (288)
Q Consensus       163 ---~~~~--~-----------------~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~  220 (288)
                         .+.+  .                 ......++..+++++.|+.|++||++.+    +++..+.+|...|.++.+++ 
T Consensus       153 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~----~~~~~~~~~~~~v~~~~~~~-  227 (342)
T d2ovrb2         153 GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETG----NCIHTLTGHQSLTSGMELKD-  227 (342)
T ss_dssp             EETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTC----CEEEEECCCCSCEEEEEEET-
T ss_pred             ecCCCeEEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccc----eeeeEecccccceeEEecCC-
Confidence               0000  0                 0001124567999999999999998775    35566788999999999886 


Q ss_pred             CCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeec---cccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          221 LGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHD---FKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       221 ~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~---~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                           ++|++|+.|+.|++||......   ...+..   +...+.++.|  +++++++|+.||+|+|||+
T Consensus       228 -----~~l~s~s~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~  287 (342)
T d2ovrb2         228 -----NILVSGNADSTVKIWDIKTGQC---LQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDL  287 (342)
T ss_dssp             -----TEEEEEETTSCEEEEETTTCCE---EEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEET
T ss_pred             -----CEEEEEcCCCEEEEEecccccc---cccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEEC
Confidence                 4799999999999999875422   122222   3345665555  5679999999999999995

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=1.4e-26  Score=197.40  Aligned_cols=245  Identities=8%  Similarity=-0.004  Sum_probs=175.6

Q ss_pred             cccccceEEEEEcCCCCEEEEeeCCC--cEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            8 TGHEDTVHDVAMDYYGKRLATASSDY--SIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         8 ~~h~~~v~~~~~s~~g~~l~s~~~d~--~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      .+|...|.+++|+|||++|++++.+.  .+++||...+   ....+.+|...|.+++|+++  +++|++++.++.+++|+
T Consensus        39 ~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~---~~~~~~~~~~~v~~~~~spd--g~~l~~~~~~~~~~~~~  113 (360)
T d1k32a3          39 VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG---KAEKFEENLGNVFAMGVDRN--GKFAVVANDRFEIMTVD  113 (360)
T ss_dssp             CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTC---CEEECCCCCCSEEEEEECTT--SSEEEEEETTSEEEEEE
T ss_pred             ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCC---cEEEeeCCCceEEeeeeccc--ccccceecccccccccc
Confidence            37999999999999999998877664  7999998543   35567889999999999875  89999999999999999


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEE----------eCCCcEEEEeecCCCCeeeEEeeccCCCCeeEE
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACG----------SSDGNISVFTARADGGWDTSRIDQAHPVGVTSV  155 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg----------~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i  155 (288)
                      .....   ....+..|...+.+++|+|+  +.+++.+          ..++.+++|+.+.+..    .....+...+..+
T Consensus       114 ~~~~~---~~~~~~~~~~~~~~~~~spd--g~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~----~~~~~~~~~~~~~  184 (360)
T d1k32a3         114 LETGK---PTVIERSREAMITDFTISDN--SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI----FAATTENSHDYAP  184 (360)
T ss_dssp             TTTCC---EEEEEECSSSCCCCEEECTT--SCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE----EECSCSSSBEEEE
T ss_pred             ccccc---eeeeeecccccccchhhccc--eeeeeeeccccccceeeccccceeeeccccCce----eeecccccccccc
Confidence            97665   34456678889999999998  5556543          3345688999875421    2223455668889


Q ss_pred             EeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCcee------eee----------------------------
Q 036510          156 SWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWK------MDC----------------------------  201 (288)
Q Consensus       156 ~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~------~~~----------------------------  201 (288)
                      .|+|++              +.|++++.|+.+++||.......      ...                            
T Consensus       185 ~~spdg--------------~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  250 (360)
T d1k32a3         185 AFDADS--------------KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLN  250 (360)
T ss_dssp             EECTTS--------------CEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCT
T ss_pred             cccCCC--------------CEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeec
Confidence            999987              67888888999988875321000      000                            


Q ss_pred             ---------------eeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEe
Q 036510          202 ---------------FPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSW  266 (288)
Q Consensus       202 ---------------~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~  266 (288)
                                     ...+..+.+.+..+.+.+... ...++++++.|+.|++||+...+       ...+.+.|.+++|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~-------~~~~~~~v~~~~~  322 (360)
T d1k32a3         251 DMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGE-FAAYYQGAPEKGVLLKYDVKTRK-------VTEVKNNLTDLRL  322 (360)
T ss_dssp             TGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCS-HHHHHHCCCCCEEEEEEETTTCC-------EEEEEEEEEEEEE
T ss_pred             ccccceeecccCcCceeEeeecCCCceEEEEEecCC-CeeEEEecCCCCEEEEEECCCCe-------EEEecCCcCEEEE
Confidence                           000111222233333333211 12356777889999999976431       2234467999999


Q ss_pred             ecCCCEEEEEeCCCcEEEeEcC
Q 036510          267 SLTGNILAVADGNNNVTLWEEA  288 (288)
Q Consensus       267 spdg~~l~s~~~d~~v~~w~~~  288 (288)
                      ||||++|++++.||+|++||++
T Consensus       323 SpDG~~l~~~~~Dg~i~v~d~~  344 (360)
T d1k32a3         323 SADRKTVMVRKDDGKIYTFPLE  344 (360)
T ss_dssp             CTTSCEEEEEETTSCEEEEESS
T ss_pred             CCCCCEEEEEECCCeEEEEECC
Confidence            9999999999999999999953

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.2e-25  Score=188.63  Aligned_cols=252  Identities=12%  Similarity=0.065  Sum_probs=171.4

Q ss_pred             cccccceEEEEEcCC-CCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCe-EEEEecCCCCCCEEEEeeCCCcEEEee
Q 036510            8 TGHEDTVHDVAMDYY-GKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAV-WEVAWAHPKFGSILASCSFDGTVIIWK   85 (288)
Q Consensus         8 ~~h~~~v~~~~~s~~-g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~s~d~~v~iwd   85 (288)
                      .+|+.+|.+++|+|+ +.+|++|+.|++|++|+.....  .......+.... ....+.+  ....+++++.|+++++||
T Consensus        53 ~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~wd  128 (342)
T d1yfqa_          53 LRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP--SFQALTNNEANLGICRICKY--GDDKLIAASWDGLIEVID  128 (342)
T ss_dssp             EECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS--SEEECBSCCCCSCEEEEEEE--TTTEEEEEETTSEEEEEC
T ss_pred             cCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccc--cccccccccccccccccccc--ccccccccccccccceee
Confidence            379999999999986 5689999999999999986432  233333333333 3333332  367999999999999999


Q ss_pred             cCCCCce-EEeEEeecC--CCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCC
Q 036510           86 EGNSNEW-IKDHVFEDH--KSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTA  162 (288)
Q Consensus        86 ~~~~~~~-~~~~~~~~h--~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~  162 (288)
                      ++..... ........+  ........+.+.  ...+++++.|+.|++|+++.............+...+.+..+.|.. 
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  205 (342)
T d1yfqa_         129 PRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN--SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKE-  205 (342)
T ss_dssp             HHHHTTBCEEEEESCSSSSSSCCCEEEEEEC--SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGG-
T ss_pred             ccccccceeeecccccccccceeeeeeeecc--CCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCC-
Confidence            8543221 111222222  223344555555  4568899999999999998755433333334455556666666554 


Q ss_pred             CCceecccccCCCceeEEeecCCcEEEEEEeCCce--------eee---eeeccccCCcceEEEEecCCCCCCCcEEEEE
Q 036510          163 PGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIW--------KMD---CFPALQMHTDWVRDVAWAPNLGLPKSTIASA  231 (288)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--------~~~---~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~  231 (288)
                                  ...+++++.|+.+.+|+......        ...   ......+|...|++++|+|+.    .+||||
T Consensus       206 ------------~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~----~~lasg  269 (342)
T d1yfqa_         206 ------------QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH----KFLYTA  269 (342)
T ss_dssp             ------------GCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT----CCEEEE
T ss_pred             ------------CCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCc----cEEEEE
Confidence                        26788999999999999854311        011   112235677789999999984    689999


Q ss_pred             eCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          232 SEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       232 s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      +.||.|++||++..+   ....+.. ...+..++|+|+|++|++|++|+++++|.
T Consensus       270 ~~Dg~v~vWD~~~~~---~l~~~~~-~~~~~~~~~s~~~~~l~~a~sdd~~~~~~  320 (342)
T d1yfqa_         270 GSDGIISCWNLQTRK---KIKNFAK-FNEDSVVKIACSDNILCLATSDDTFKTNA  320 (342)
T ss_dssp             ETTSCEEEEETTTTE---EEEECCC-CSSSEEEEEEECSSEEEEEEECTHHHHCS
T ss_pred             CCCCEEEEEECCCCc---EEEEecC-CCCCEEEEEEeCCCEEEEEEcCCcEEEee
Confidence            999999999987532   1111211 23566789999999999999999887775

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.6e-24  Score=178.34  Aligned_cols=213  Identities=17%  Similarity=0.271  Sum_probs=148.2

Q ss_pred             eeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC
Q 036510           46 QHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD  125 (288)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d  125 (288)
                      +.+....+|...|+++.|.    +++|+|||.||+|+|||+.++.   ...++.+|...|.+++|++    .++++|+.|
T Consensus         6 ~~i~~~~~~~~~V~c~~~d----~~~l~sgs~Dg~i~vWd~~~~~---~~~~l~~H~~~V~~v~~~~----~~l~s~s~D   74 (293)
T d1p22a2           6 QRIHCRSETSKGVYCLQYD----DQKIVSGLRDNTIKIWDKNTLE---CKRILTGHTGSVLCLQYDE----RVIITGSSD   74 (293)
T ss_dssp             CCEECCCSSCCCEEEEECC----SSEEEEEESSSCEEEEESSSCC---EEEEECCCSSCEEEEECCS----SEEEEEETT
T ss_pred             EEEeccCCCCCCEEEEEEc----CCEEEEEeCCCeEEEEECCCCc---EEEEEecCCCCEeeeeccc----ceeeccccc
Confidence            3456667889999988762    7899999999999999997765   5567889999999998753    479999999


Q ss_pred             CcEEEEeecCCCCeeeEEeeccCCCCeeEE-----------------EeCCCCCCCceec----------ccccCCCcee
Q 036510          126 GNISVFTARADGGWDTSRIDQAHPVGVTSV-----------------SWAPSTAPGALVG----------SGFLDPVQKL  178 (288)
Q Consensus       126 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i-----------------~~~p~~~~~~~~~----------~~~~~~~~~l  178 (288)
                      +.|++|+++.+......   ..+.......                 .|...........          .........+
T Consensus        75 ~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  151 (293)
T d1p22a2          75 STVRVWDVNTGEMLNTL---IHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYI  151 (293)
T ss_dssp             SCEEEEESSSCCEEEEE---CCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEE
T ss_pred             ccccccccccccccccc---cccccccccccccccceeecccccceeEeeccccccccccccccccccccccceeccccc
Confidence            99999999765321111   0010000000                 0111100000000          0001123467


Q ss_pred             EEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccc
Q 036510          179 CSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFK  258 (288)
Q Consensus       179 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~  258 (288)
                      ++++.|+.|++||++++    +++..+.+|...|..+.+++      .++++++.|++|++||++...   .......+.
T Consensus       152 ~~~s~d~~i~~~d~~~~----~~~~~~~~~~~~v~~~~~~~------~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~  218 (293)
T d1p22a2         152 VSASGDRTIKVWNTSTC----EFVRTLNGHKRGIACLQYRD------RLVVSGSSDNTIRLWDIECGA---CLRVLEGHE  218 (293)
T ss_dssp             EEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEEET------TEEEEEETTSCEEEEETTTCC---EEEEECCCS
T ss_pred             ccccCCCceeeecCCCC----cEEEEEcccccccccccCCC------CeEEEecCCCEEEEEecccce---eeeeecccc
Confidence            88999999999999876    45566788888899998876      479999999999999987532   123334445


Q ss_pred             cCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          259 TPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       259 ~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ..+.  .+++++.+|++|+.|++|+|||+
T Consensus       219 ~~v~--~~~~~~~~l~sg~~dg~i~iwd~  245 (293)
T d1p22a2         219 ELVR--CIRFDNKRIVSGAYDGKIKVWDL  245 (293)
T ss_dssp             SCEE--EEECCSSEEEEEETTSCEEEEEH
T ss_pred             eeee--eccccceEEEEEcCCCEEEEEEC
Confidence            5554  46788999999999999999984

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=8.5e-25  Score=181.54  Aligned_cols=213  Identities=16%  Similarity=0.243  Sum_probs=150.1

Q ss_pred             ccccccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCC----c---------e--------eeEEEec----------cc
Q 036510            7 ETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNT----S---------Q--------HLAKLSG----------HK   55 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~----~---------~--------~~~~~~~----------h~   55 (288)
                      ..+|...|.++.+++++ .+++++.|+++++|++....    .         .        .+..+..          +.
T Consensus        42 ~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (287)
T d1pgua2          42 HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLN  120 (287)
T ss_dssp             ECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred             CCCCCCCEEEEEecCCC-eEEEEeeccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeecccc
Confidence            45899999999998754 68999999999999763210    0         0        0011111          11


Q ss_pred             cCeEEEEecCCCCCCEEEEeeCC-CcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeec
Q 036510           56 GAVWEVAWAHPKFGSILASCSFD-GTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTAR  134 (288)
Q Consensus        56 ~~v~~~~~~~~~~~~~l~s~s~d-~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~  134 (288)
                      ..+..+.  ++  +..++.++.| +.+++|++....  ........|..++++++|+|+  +.+|++|+.||.|++||++
T Consensus       121 ~~~~~~~--~~--~~~~~v~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~--~~~l~~g~~dg~i~i~d~~  192 (287)
T d1pgua2         121 SPGSAVS--LS--QNYVAVGLEEGNTIQVFKLSDLE--VSFDLKTPLRAKPSYISISPS--ETYIAAGDVMGKILLYDLQ  192 (287)
T ss_dssp             SCEEEEE--EC--SSEEEEEETTTSCEEEEETTEEE--EEEECSSCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETT
T ss_pred             ceeeeee--cc--Ccceeeeccccceeeeeeccccc--eeeeeeeccCCceeEEEeccC--ccccccccccccccceeec
Confidence            2222222  22  4566666655 579999975432  122223457889999999998  6789999999999999987


Q ss_pred             CCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEE
Q 036510          135 ADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRD  214 (288)
Q Consensus       135 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~  214 (288)
                      +..  .......+|...|.+++|+|.....    .....+..+|++|+.|++|++||+..+.   +++..+.+|...|++
T Consensus       193 ~~~--~~~~~~~~h~~~v~~~~~~p~~~~~----~~~~~~~~~l~sgs~D~~i~iw~~~~~~---~~~~~~~~h~~~V~~  263 (287)
T d1pgua2         193 SRE--VKTSRWAFRTSKINAISWKPAEKGA----NEEEIEEDLVATGSLDTNIFIYSVKRPM---KIIKALNAHKDGVNN  263 (287)
T ss_dssp             TTE--EEECCSCCCSSCEEEEEECCCC----------CCSCCEEEEEETTSCEEEEESSCTT---CCEEETTSSTTCEEE
T ss_pred             ccc--cccccccccccccceeeeccccccc----ccccCCCCeeEeecCCCeEEEEECCCCC---eEEEEeCCCCCCeEE
Confidence            642  2223456789999999999986421    1123345789999999999999987643   345567899999999


Q ss_pred             EEecCCCCCCCcEEEEEeCCCcEEEEEe
Q 036510          215 VAWAPNLGLPKSTIASASEDGKVIIWTV  242 (288)
Q Consensus       215 v~~sp~~~~~~~~l~s~s~D~~i~iw~~  242 (288)
                      +.|+|+     .+|+|++.|++|++|++
T Consensus       264 v~~~~~-----~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         264 LLWETP-----STLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEET-----TEEEEEETTSCEEEEEE
T ss_pred             EEECCC-----CEEEEEECCCeEEEEEE
Confidence            999996     36999999999999985

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=1.2e-22  Score=178.56  Aligned_cols=266  Identities=11%  Similarity=0.072  Sum_probs=164.4

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEE---EeccccCeEEEEecCCCCCCEE-EEeeCCCcEEEeecC
Q 036510           12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAK---LSGHKGAVWEVAWAHPKFGSIL-ASCSFDGTVIIWKEG   87 (288)
Q Consensus        12 ~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~~l-~s~s~d~~v~iwd~~   87 (288)
                      ..+.+++|||||++|++++.|+++++||+..........   ..+|...+.+++|+++  |+++ +++..++++++||..
T Consensus        62 ~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spD--G~~l~v~~~~~~~v~i~d~~  139 (426)
T d1hzua2          62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYE--DRYTIAGAYWPPQFAIMDGE  139 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCT--TTEEEEEEEESSEEEEEETT
T ss_pred             CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCC--CCEEEEeecCCCeEEEEcCC
Confidence            458999999999999999999999999986544333333   3467777777788765  7765 666789999999987


Q ss_pred             CCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCe---------eeEEeeccCCCCeeEEEeC
Q 036510           88 NSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGW---------DTSRIDQAHPVGVTSVSWA  158 (288)
Q Consensus        88 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~---------~~~~~~~~~~~~v~~i~~~  158 (288)
                      ...   ....+..|...+....+.+++ ....+..+.|+...++.....+..         ........+...+..+.|+
T Consensus       140 ~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (426)
T d1hzua2         140 TLE---PKQIVSTRGMTVDTQTYHPEP-RVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWD  215 (426)
T ss_dssp             TCC---EEEEEECCEECSSSCCEESCC-CEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEEC
T ss_pred             ccc---eeEEeeccCCCccceeecCCC-ceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeEC
Confidence            654   233444454444444444442 222334444444444433321110         0111122455667888898


Q ss_pred             CCCCCCceecc---------------------cc----------cCCC---ceeEEeecCCcEEEEEEeCCce---eeee
Q 036510          159 PSTAPGALVGS---------------------GF----------LDPV---QKLCSGGCDNTVKVWKLYNGIW---KMDC  201 (288)
Q Consensus       159 p~~~~~~~~~~---------------------~~----------~~~~---~~l~s~~~d~~i~iwd~~~~~~---~~~~  201 (288)
                      |++........                     +.          ..+.   ...++.+.|+.+.+|+......   .-++
T Consensus       216 ~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~  295 (426)
T d1hzua2         216 SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKK  295 (426)
T ss_dssp             TTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSE
T ss_pred             CCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceE
Confidence            88742111000                     00          0000   1123445677888888654321   1234


Q ss_pred             eeccccCCcceEEEEecCCCCCCCcEEE-------EEeCCCcEEEEEeecCCCcccceE------eeccccCeEEEEeec
Q 036510          202 FPALQMHTDWVRDVAWAPNLGLPKSTIA-------SASEDGKVIIWTVAREGDQWEGKV------LHDFKTPVYRVSWSL  268 (288)
Q Consensus       202 ~~~~~~h~~~V~~v~~sp~~~~~~~~l~-------s~s~D~~i~iw~~~~~~~~~~~~~------~~~~~~~i~~~~~sp  268 (288)
                      ...+.+|...+..++|+|++    .+|+       +++.|++|++||++......+...      +.++...|..++|||
T Consensus       296 ~~~l~g~~~~v~~v~~sPdg----~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp  371 (426)
T d1hzua2         296 VAELQGQGGGSLFIKTHPKS----SHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK  371 (426)
T ss_dssp             EEEEECSSSCCCCEECCTTC----SEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECS
T ss_pred             eEEEecCCCceeEEEcCCCC----ceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECC
Confidence            56778999999999999985    6777       456789999999875432111111      123345689999999


Q ss_pred             CCCEEEEE-----eCCCcEEEeEc
Q 036510          269 TGNILAVA-----DGNNNVTLWEE  287 (288)
Q Consensus       269 dg~~l~s~-----~~d~~v~~w~~  287 (288)
                      ||++++++     +.+++|+|||.
T Consensus       372 DGk~i~vs~~~~~~~~~~i~v~D~  395 (426)
T d1hzua2         372 RGDEVWFSVWNGKNDSSALVVVDD  395 (426)
T ss_dssp             SSSEEEEEECCCTTSCCEEEEEET
T ss_pred             CCCEEEEEEecCCCCCCeEEEEEC
Confidence            99987543     35788999995

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.87  E-value=7.9e-22  Score=167.58  Aligned_cols=199  Identities=11%  Similarity=-0.022  Sum_probs=146.7

Q ss_pred             EEEcC-CCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCC--cEEEeecCCCCceE
Q 036510           17 VAMDY-YGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDG--TVIIWKEGNSNEWI   93 (288)
Q Consensus        17 ~~~s~-~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~--~v~iwd~~~~~~~~   93 (288)
                      -.||| ||+++|+++. +.|++||+..+  + +.++ +|...|.+++|+++  |+.|++++.+.  .|++||...+.   
T Consensus         8 ~~fSP~dG~~~a~~~~-g~v~v~d~~~~--~-~~~~-~~~~~v~~~~~spD--g~~l~~~~~~~g~~v~v~d~~~~~---   77 (360)
T d1k32a3           8 EDFSPLDGDLIAFVSR-GQAFIQDVSGT--Y-VLKV-PEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGK---   77 (360)
T ss_dssp             EEEEECGGGCEEEEET-TEEEEECTTSS--B-EEEC-SCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCC---
T ss_pred             ccccCCCCCEEEEEEC-CeEEEEECCCC--c-EEEc-cCCCCEEEEEECCC--CCEEEEEEcCCCCEEEEEECCCCc---
Confidence            35999 9999998774 69999998543  2 3333 79999999999975  88888777654  79999987654   


Q ss_pred             EeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccC
Q 036510           94 KDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLD  173 (288)
Q Consensus        94 ~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~  173 (288)
                       ...+..|...|.+++|+|+  +.++++++.++.+++|+......   ......|...+.++.|+|++...+...    .
T Consensus        78 -~~~~~~~~~~v~~~~~spd--g~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~spdg~~la~~~----~  147 (360)
T d1k32a3          78 -AEKFEENLGNVFAMGVDRN--GKFAVVANDRFEIMTVDLETGKP---TVIERSREAMITDFTISDNSRFIAYGF----P  147 (360)
T ss_dssp             -EEECCCCCCSEEEEEECTT--SSEEEEEETTSEEEEEETTTCCE---EEEEECSSSCCCCEEECTTSCEEEEEE----E
T ss_pred             -EEEeeCCCceEEeeeeccc--ccccceeccccccccccccccce---eeeeecccccccchhhccceeeeeeec----c
Confidence             3446679999999999998  67899999999999999976532   344556778889999999973110000    0


Q ss_pred             CCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510          174 PVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR  244 (288)
Q Consensus       174 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~  244 (288)
                      .....+.+..++.+++||+.++.     ...+..|...+..+.|+|++    ++|++++.|+.+++|+...
T Consensus       148 ~~~~~~~~~~~~~~~v~d~~~~~-----~~~~~~~~~~~~~~~~spdg----~~l~~~s~~~~~~~~d~~~  209 (360)
T d1k32a3         148 LKHGETDGYVMQAIHVYDMEGRK-----IFAATTENSHDYAPAFDADS----KNLYYLSYRSLDPSPDRVV  209 (360)
T ss_dssp             ECSSTTCSCCEEEEEEEETTTTE-----EEECSCSSSBEEEEEECTTS----CEEEEEESCCCCCEECSSS
T ss_pred             ccccceeeccccceeeeccccCc-----eeeecccccccccccccCCC----CEEEEEeCCCceEcccccc
Confidence            00111234556679999987752     22334566678999999984    7899999999999998653

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=7.9e-21  Score=167.43  Aligned_cols=143  Identities=10%  Similarity=0.000  Sum_probs=100.7

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCcee---eEEEeccccCeEEEEecCCCCCCEE-EEeeCCCcEEEeecC
Q 036510           12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQH---LAKLSGHKGAVWEVAWAHPKFGSIL-ASCSFDGTVIIWKEG   87 (288)
Q Consensus        12 ~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~d~~v~iwd~~   87 (288)
                      ..+..++|||||++|++++.|+++++||+.....+.   +....+|.+.+.+..|+++  |++| ++++.++++++||..
T Consensus        62 ~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpD--G~~l~vs~~~~~~v~i~d~~  139 (432)
T d1qksa2          62 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWE--DKYAIAGAYWPPQYVIMDGE  139 (432)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCT--TTEEEEEEEETTEEEEEETT
T ss_pred             CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCC--CCEEEEEcCCCCeEEEEeCc
Confidence            358999999999999999999999999986443332   3333467777777777754  7765 789999999999997


Q ss_pred             CCCceEEeEEeec-----------CCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEE
Q 036510           88 NSNEWIKDHVFED-----------HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVS  156 (288)
Q Consensus        88 ~~~~~~~~~~~~~-----------h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~  156 (288)
                      ++..   ...+..           +......+.++|++ ..++++...++.|.+|+...........  -.+......+.
T Consensus       140 t~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~~~vs~~~~~~i~~~d~~~~~~~~~~~--i~~g~~~~~~~  213 (432)
T d1qksa2         140 TLEP---KKIQSTRGMTYDEQEYHPEPRVAAILASHYR-PEFIVNVKETGKILLVDYTDLNNLKTTE--ISAERFLHDGG  213 (432)
T ss_dssp             TCCE---EEEEECCEECTTTCCEESCCCEEEEEECSSS-SEEEEEETTTTEEEEEETTCSSEEEEEE--EECCSSEEEEE
T ss_pred             cccc---eeeeccCCccccceeccCCCceeEEEECCCC-CEEEEEEccCCeEEEEEccCCCcceEEE--EcccCccccce
Confidence            7652   222222           34456677888874 4556777888999999876543222111  23445678899


Q ss_pred             eCCCCC
Q 036510          157 WAPSTA  162 (288)
Q Consensus       157 ~~p~~~  162 (288)
                      |+|++.
T Consensus       214 ~spdg~  219 (432)
T d1qksa2         214 LDGSHR  219 (432)
T ss_dssp             ECTTSC
T ss_pred             ECCCCC
Confidence            999984

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.86  E-value=1.7e-18  Score=143.13  Aligned_cols=237  Identities=10%  Similarity=0.073  Sum_probs=159.9

Q ss_pred             cceEEEEEcCCCCEE-EEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCC
Q 036510           12 DTVHDVAMDYYGKRL-ATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN   90 (288)
Q Consensus        12 ~~v~~~~~s~~g~~l-~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~   90 (288)
                      ..+..++|+|||++| ++++.+++|++||+..  .+.+.++..|.. +..+.|+++ ....++++..++.+.+|+..+..
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t--~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  107 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTAT--NNVIATVPAGSS-PQGVAVSPD-GKQVYVTNMASSTLSVIDTTSNT  107 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTT--TEEEEEEECSSS-EEEEEECTT-SSEEEEEETTTTEEEEEETTTTE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCC--Cceeeeeecccc-ccccccccc-cccccccccccceeeecccccce
Confidence            456789999999987 5677899999999853  467778877764 588999865 23466677888999999987654


Q ss_pred             ceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceeccc
Q 036510           91 EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG  170 (288)
Q Consensus        91 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~  170 (288)
                         ....+. +.....++.|+|++ ..+++++..++.+.+|+........   .. .+......+.++|+.         
T Consensus       108 ---~~~~~~-~~~~~~~~~~~~dg-~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~---------  169 (301)
T d1l0qa2         108 ---VAGTVK-TGKSPLGLALSPDG-KKLYVTNNGDKTVSVINTVTKAVIN---TV-SVGRSPKGIAVTPDG---------  169 (301)
T ss_dssp             ---EEEEEE-CSSSEEEEEECTTS-SEEEEEETTTTEEEEEETTTTEEEE---EE-ECCSSEEEEEECTTS---------
T ss_pred             ---eeeecc-ccccceEEEeecCC-Ceeeeeeccccceeeeeccccceee---ec-ccCCCceEEEeeccc---------
Confidence               233344 34567889999985 4456677888899999987653221   11 233457888899887         


Q ss_pred             ccCCCceeEEeecC-CcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEE-EE--eCCCcEEEEEeecCC
Q 036510          171 FLDPVQKLCSGGCD-NTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIA-SA--SEDGKVIIWTVAREG  246 (288)
Q Consensus       171 ~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~-s~--s~D~~i~iw~~~~~~  246 (288)
                           ..++++..+ +.+.+|+....    +....+. +......+.|+++.    ..++ ++  ..++.|++||+...+
T Consensus       170 -----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~g----~~~~v~~~~~~~~~v~v~D~~t~~  235 (301)
T d1l0qa2         170 -----TKVYVANFDSMSISVIDTVTN----SVIDTVK-VEAAPSGIAVNPEG----TKAYVTNVDKYFNTVSMIDTGTNK  235 (301)
T ss_dssp             -----SEEEEEETTTTEEEEEETTTT----EEEEEEE-CSSEEEEEEECTTS----SEEEEEEECSSCCEEEEEETTTTE
T ss_pred             -----cceeeecccccccccccccce----eeeeccc-ccCCcceeeccccc----cccccccccceeeeeeeeecCCCe
Confidence                 445555544 55666665443    2222222 23346788999975    3343 33  235789999986531


Q ss_pred             CcccceEeeccccCeEEEEeecCCCEE-EEEeCCCcEEEeEcC
Q 036510          247 DQWEGKVLHDFKTPVYRVSWSLTGNIL-AVADGNNNVTLWEEA  288 (288)
Q Consensus       247 ~~~~~~~~~~~~~~i~~~~~spdg~~l-~s~~~d~~v~~w~~~  288 (288)
                         ....+ .....+..++|+|||++| ++++.|++|++||.+
T Consensus       236 ---~~~~~-~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~  274 (301)
T d1l0qa2         236 ---ITARI-PVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTA  274 (301)
T ss_dssp             ---EEEEE-ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             ---EEEEE-cCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence               11111 234568999999999986 566779999999953

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=5.9e-18  Score=142.00  Aligned_cols=259  Identities=14%  Similarity=0.232  Sum_probs=164.7

Q ss_pred             ccccceEEEEEcCCCCEEEEee-CCCcEEEEEeCCCCcee-eEEEeccccCeEEEEecCCCCCCEEEEee-CCCcEEEee
Q 036510            9 GHEDTVHDVAMDYYGKRLATAS-SDYSIKIIGVGNNTSQH-LAKLSGHKGAVWEVAWAHPKFGSILASCS-FDGTVIIWK   85 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l~s~~-~d~~i~lwd~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~d~~v~iwd   85 (288)
                      .|.+.|.+++|+|||++|++++ .|+.|++|+++...... ......+...+..++|+++  |++|++++ .++++.+|+
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spD--g~~l~v~~~~~~~v~~~~  111 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQ--GQFVFVGSYNAGNVSVTR  111 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTT--SSEEEEEETTTTEEEEEE
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCC--CCEEeecccCCCceeeec
Confidence            6778899999999999985544 58999999986443222 1122234455678999875  88887776 577899998


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEE---eeccCCCCeeEEEeCCCCC
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSR---IDQAHPVGVTSVSWAPSTA  162 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~---~~~~~~~~v~~i~~~p~~~  162 (288)
                      ....... .......+...+.++.++|++ ..++.....+..|.+|+...........   ...........+.|++++.
T Consensus       112 ~~~~~~~-~~~~~~~~~~~~~~v~~s~d~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~  189 (333)
T d1ri6a_         112 LEDGLPV-GVVDVVEGLDGCHSANISPDN-RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQ  189 (333)
T ss_dssp             EETTEEE-EEEEEECCCTTBCCCEECTTS-SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSS
T ss_pred             cccccce-ecccccCCCccceEEEeeecc-eeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccce
Confidence            7654322 223344566778899999985 3344444566789999987654332211   1122334567888888762


Q ss_pred             CCceecccccCCCceeEEeecCCcEEEEEEeCCceeeee---eec---cccCCcceEEEEecCCCCCCCcEEEEEeCCCc
Q 036510          163 PGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDC---FPA---LQMHTDWVRDVAWAPNLGLPKSTIASASEDGK  236 (288)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~~---~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~  236 (288)
                                   ...++....+...+|+..........   +..   -.........+.++|+.   ...++++..++.
T Consensus       190 -------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~---~~~~~~~~~~~~  253 (333)
T d1ri6a_         190 -------------YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG---RHLYACDRTASL  253 (333)
T ss_dssp             -------------EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS---SEEEEEETTTTE
T ss_pred             -------------eEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEeccc---CceeeecccCCe
Confidence                         23445555666777775432211111   111   11233456778899985   345666777899


Q ss_pred             EEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeC-CCcEEEeEc
Q 036510          237 VIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADG-NNNVTLWEE  287 (288)
Q Consensus       237 i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~-d~~v~~w~~  287 (288)
                      +.+|++..................+..++|+|||++|++++. +++|+||++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~i  305 (333)
T d1ri6a_         254 ITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEI  305 (333)
T ss_dssp             EEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred             EEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            999998754332222222233456778999999999877764 589999963

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.83  E-value=2.3e-19  Score=157.38  Aligned_cols=237  Identities=10%  Similarity=-0.028  Sum_probs=146.4

Q ss_pred             CEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEE--eEEeecC
Q 036510           24 KRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIK--DHVFEDH  101 (288)
Q Consensus        24 ~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~--~~~~~~h  101 (288)
                      -++++.+.|++|+|||+.  +++.+.++..|. .+..++|+|+  |++|++++.|+++++||+.+++....  +....+|
T Consensus        33 ~~~V~~~~dg~v~vwD~~--t~~~~~~l~~g~-~~~~vafSPD--Gk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~  107 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGD--SKKIVKVIDTGY-AVHISRMSAS--GRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEA  107 (426)
T ss_dssp             EEEEEETTTTEEEEEETT--TCSEEEEEECCS-SEEEEEECTT--SCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEE
T ss_pred             EEEEEEcCCCEEEEEECC--CCcEEEEEeCCC-CeeEEEECCC--CCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCC
Confidence            356888899999999985  457788888875 5899999975  89999999999999999977653211  1122345


Q ss_pred             CCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCC-----------eeEEEeCCCCCCCceeccc
Q 036510          102 KSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVG-----------VTSVSWAPSTAPGALVGSG  170 (288)
Q Consensus       102 ~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-----------v~~i~~~p~~~~~~~~~~~  170 (288)
                      .+.+.+++|+||+ ..+++++..++.+++||.......   .....|...           ...+..++++.        
T Consensus       108 ~~~~~s~~~spDG-~~l~v~~~~~~~v~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~--------  175 (426)
T d1hzua2         108 RSVESSKFKGYED-RYTIAGAYWPPQFAIMDGETLEPK---QIVSTRGMTVDTQTYHPEPRVAAIIASHEHP--------  175 (426)
T ss_dssp             EEEEECCSTTCTT-TEEEEEEEESSEEEEEETTTCCEE---EEEECCEECSSSCCEESCCCEEEEEECSSSS--------
T ss_pred             cceEEeeeecCCC-CEEEEeecCCCeEEEEcCCcccee---EEeeccCCCccceeecCCCceeEEEECCCCC--------
Confidence            5667778888884 344566678999999998765422   222223222           23333444331        


Q ss_pred             ccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCC---
Q 036510          171 FLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGD---  247 (288)
Q Consensus       171 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~---  247 (288)
                           .++++....+.+.+++......   .......+...+..+.|+|+.   ..++++...+..+.+++......   
T Consensus       176 -----~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g---~~~~~a~~~~~~~~~~~~~~~~~~~~  244 (426)
T d1hzua2         176 -----EFIVNVKETGKVLLVNYKDIDN---LTVTSIGAAPFLADGGWDSSH---RYFMTAANNSNKVAVIDSKDRRLSAL  244 (426)
T ss_dssp             -----EEEEEETTTTEEEEEECSSSSS---CEEEEEECCSSEEEEEECTTS---CEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred             -----EEEEecCCCCeEEEEEeccccc---eeeEEeccCCccEeeeECCCC---cEEEeeeecccceeeeecccccEEEE
Confidence                 2233333344454444433211   111223456667888888874   12333333455555555432110   


Q ss_pred             --------------------------------------------c----ccceEeeccccCeEEEEeecCCCEEEE----
Q 036510          248 --------------------------------------------Q----WEGKVLHDFKTPVYRVSWSLTGNILAV----  275 (288)
Q Consensus       248 --------------------------------------------~----~~~~~~~~~~~~i~~~~~spdg~~l~s----  275 (288)
                                                                  .    .....+.+|...+..++|||||++|++    
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~  324 (426)
T d1hzua2         245 VDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTF  324 (426)
T ss_dssp             EECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTT
T ss_pred             eccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecC
Confidence                                                        0    011122345566889999999999995    


Q ss_pred             ---EeCCCcEEEeEcC
Q 036510          276 ---ADGNNNVTLWEEA  288 (288)
Q Consensus       276 ---~~~d~~v~~w~~~  288 (288)
                         ++.|++|+|||++
T Consensus       325 ~~s~~~~~tv~vwd~~  340 (426)
T d1hzua2         325 NPDARISQSVAVFDLK  340 (426)
T ss_dssp             CSSHHHHTCEEEEETT
T ss_pred             CCCcccCCEEEEEECC
Confidence               5568999999953

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=1.3e-18  Score=145.83  Aligned_cols=239  Identities=10%  Similarity=0.061  Sum_probs=144.3

Q ss_pred             CEEEEeeCCCcEEEEEeCCCCceeeEEEecc--ccCeEEEEecCCCCCCEE-EEeeCCCcEEEeecCCCCceEEeEEeec
Q 036510           24 KRLATASSDYSIKIIGVGNNTSQHLAKLSGH--KGAVWEVAWAHPKFGSIL-ASCSFDGTVIIWKEGNSNEWIKDHVFED  100 (288)
Q Consensus        24 ~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l-~s~s~d~~v~iwd~~~~~~~~~~~~~~~  100 (288)
                      +||++++.|++|++||+..  .+.+.++..+  ...+.+++|+++  |+++ ++++.++.|.+||+.+++.   ...+..
T Consensus         2 ~~~vt~~~d~~v~v~D~~s--~~~~~~i~~~~~~~~~~~i~~spD--g~~l~v~~~~~~~v~v~D~~t~~~---~~~~~~   74 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEK--MAVDKVITIADAGPTPMVPMVAPG--GRIAYATVNKSESLVKIDLVTGET---LGRIDL   74 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT--TEEEEEEECTTCTTCCCCEEECTT--SSEEEEEETTTTEEEEEETTTCCE---EEEEEC
T ss_pred             eEEEEEcCCCEEEEEECCC--CeEEEEEECCCCCCCccEEEECCC--CCEEEEEECCCCeEEEEECCCCcE---EEEEec
Confidence            4899999999999999854  4667777643  345778999865  7766 6778899999999987653   223332


Q ss_pred             C-----CCceeEEEeccCCCCeEEEEEe------------CCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCC
Q 036510          101 H-----KSSVNSIDWAPHELGLCLACGS------------SDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAP  163 (288)
Q Consensus       101 h-----~~~v~~l~~~p~~~~~~l~sg~------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~  163 (288)
                      +     ...+..++|+|++  ..++++.            .++.+.+||......   .... .+...+..+.|+|++..
T Consensus        75 ~~~~~~~~~~~~v~~s~dg--~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~-~~~~~~~~~~~s~dg~~  148 (337)
T d1pbyb_          75 STPEERVKSLFGAALSPDG--KTLAIYESPVRLELTHFEVQPTRVALYDAETLSR---RKAF-EAPRQITMLAWARDGSK  148 (337)
T ss_dssp             CBTTEEEECTTCEEECTTS--SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE---EEEE-ECCSSCCCEEECTTSSC
T ss_pred             CCCcccccceeeEEEcCCC--cEEEEeecCCcceeeeccccccceeeccccCCeE---EEec-cccCCceEEEEcCCCCE
Confidence            2     2345678999984  4444443            456778888765422   1111 23345677888888732


Q ss_pred             Cceeccc-------------------------ccCCCc------------------------eeEEeecCCcEEEEEEeC
Q 036510          164 GALVGSG-------------------------FLDPVQ------------------------KLCSGGCDNTVKVWKLYN  194 (288)
Q Consensus       164 ~~~~~~~-------------------------~~~~~~------------------------~l~s~~~d~~i~iwd~~~  194 (288)
                      ....+..                         +..+..                        ....+..++.+.+||...
T Consensus       149 l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (337)
T d1pbyb_         149 LYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET  228 (337)
T ss_dssp             EEEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT
T ss_pred             EEEEcCCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCC
Confidence            1110000                         000000                        000011122244444333


Q ss_pred             CceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEE
Q 036510          195 GIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILA  274 (288)
Q Consensus       195 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~  274 (288)
                      +...   ...+..+...+....++|+.    .++..  .|+.|++||+...+.   ... ..+...+.+++|+|||++|+
T Consensus       229 ~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~i~v~d~~~~~~---~~~-~~~~~~~~~~~~s~dG~~l~  295 (337)
T d1pbyb_         229 GEMA---MREVRIMDVFYFSTAVNPAK----TRAFG--AYNVLESFDLEKNAS---IKR-VPLPHSYYSVNVSTDGSTVW  295 (337)
T ss_dssp             CCEE---EEEEEECSSCEEEEEECTTS----SEEEE--EESEEEEEETTTTEE---EEE-EECSSCCCEEEECTTSCEEE
T ss_pred             CcEE---EEEecCCCcceEEEEecccc----eEEEE--ccccEEEEECCCCcE---EEE-EcCCCCEEEEEECCCCCEEE
Confidence            3111   11223445556667777763    44433  368999999875321   111 23456688999999999999


Q ss_pred             EEeCCCcEEEeEcC
Q 036510          275 VADGNNNVTLWEEA  288 (288)
Q Consensus       275 s~~~d~~v~~w~~~  288 (288)
                      +++.|++|+|||.+
T Consensus       296 v~~~~~~i~v~D~~  309 (337)
T d1pbyb_         296 LGGALGDLAAYDAE  309 (337)
T ss_dssp             EESBSSEEEEEETT
T ss_pred             EEeCCCcEEEEECC
Confidence            99999999999953

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.81  E-value=1.1e-18  Score=146.84  Aligned_cols=250  Identities=10%  Similarity=0.010  Sum_probs=150.2

Q ss_pred             EEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEe-ccccCeEEEEecCCCCCCEE-EEeeCCCcEEEeecCCCCceEE
Q 036510           17 VAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLS-GHKGAVWEVAWAHPKFGSIL-ASCSFDGTVIIWKEGNSNEWIK   94 (288)
Q Consensus        17 ~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l-~s~s~d~~v~iwd~~~~~~~~~   94 (288)
                      ++|+++++||++++.|++|.+||+..  .+.+.++. .|...+.+++|+++  |+++ ++++.++.|++||+.+++.   
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t--~~~~~t~~~~~~~~p~~l~~spD--G~~l~v~~~~~~~v~~~d~~t~~~---   74 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVAS--DTVYKSCVMPDKFGPGTAMMAPD--NRTAYVLNNHYGDIYGIDLDTCKN---   74 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTT--TEEEEEEECSSCCSSCEEEECTT--SSEEEEEETTTTEEEEEETTTTEE---
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCC--CCEEEEEEcCCCCCcceEEECCC--CCEEEEEECCCCcEEEEeCccCee---
Confidence            56899999999999999999999954  47777776 45667789999875  7765 6777899999999987642   


Q ss_pred             eEEeec------CCCceeEEEeccCCCCeEEEEEe------------CCCcEEEEeecCCCCeeeEEeeccCCCCeeEEE
Q 036510           95 DHVFED------HKSSVNSIDWAPHELGLCLACGS------------SDGNISVFTARADGGWDTSRIDQAHPVGVTSVS  156 (288)
Q Consensus        95 ~~~~~~------h~~~v~~l~~~p~~~~~~l~sg~------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~  156 (288)
                      ...+..      +...+..++|+|++  ..+++++            .++.+.+|+...+......... ..+..+..+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~v~~s~DG--~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~  151 (346)
T d1jmxb_          75 TFHANLSSVPGEVGRSMYSFAISPDG--KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMR  151 (346)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECTTS--SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEE
T ss_pred             eeeecccccccccCCceEEEEEecCC--CEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEee-eccCceEEEE
Confidence            222221      11245678999984  4444332            4677888887643211111100 0111112222


Q ss_pred             eCCCCCC--------------Ccee----------cccccCC--------------------------CceeEEeecCCc
Q 036510          157 WAPSTAP--------------GALV----------GSGFLDP--------------------------VQKLCSGGCDNT  186 (288)
Q Consensus       157 ~~p~~~~--------------~~~~----------~~~~~~~--------------------------~~~l~s~~~d~~  186 (288)
                      +++++..              +...          ...+..+                          ...+.++..+..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (346)
T d1jmxb_         152 AADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG  231 (346)
T ss_dssp             ECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred             ecCCCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCce
Confidence            2222100              0000          0000001                          111223333445


Q ss_pred             EEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEe
Q 036510          187 VKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSW  266 (288)
Q Consensus       187 i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~  266 (288)
                      +.+||..++.   .....+..|...+..+.++|+.    .+++.+.. +.|++||....+   .... ......+.+++|
T Consensus       232 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~v~v~d~~~~~---~~~~-~~~~~~~~~va~  299 (346)
T d1jmxb_         232 YLSVDLKTGK---THTQEFADLTELYFTGLRSPKD----PNQIYGVL-NRLAKYDLKQRK---LIKA-ANLDHTYYCVAF  299 (346)
T ss_dssp             EEEEETTTCC---EEEEEEEECSSCEEEEEECSSC----TTEEEEEE-SEEEEEETTTTE---EEEE-EECSSCCCEEEE
T ss_pred             EEEEECCCCc---eEEEEeecccceeEEEEEeCCC----CEEEEecC-CeEEEEECCCCc---EEEE-EcCCCCEEEEEE
Confidence            6666665542   1122345677778888998874    34665554 579999976431   1111 223457889999


Q ss_pred             ecCCCEEEEEeCCCcEEEeEcC
Q 036510          267 SLTGNILAVADGNNNVTLWEEA  288 (288)
Q Consensus       267 spdg~~l~s~~~d~~v~~w~~~  288 (288)
                      ||||+++++++.|++|++||.+
T Consensus       300 s~DG~~l~v~~~d~~v~v~D~~  321 (346)
T d1jmxb_         300 DKKGDKLYLGGTFNDLAVFNPD  321 (346)
T ss_dssp             CSSSSCEEEESBSSEEEEEETT
T ss_pred             cCCCCEEEEEeCCCcEEEEECc
Confidence            9999999999999999999953

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=1.1e-17  Score=147.09  Aligned_cols=237  Identities=12%  Similarity=-0.015  Sum_probs=155.7

Q ss_pred             EEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceE--EeEEeecCC
Q 036510           25 RLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWI--KDHVFEDHK  102 (288)
Q Consensus        25 ~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~--~~~~~~~h~  102 (288)
                      .+++.+.|++|.|||..  +++.+..+..|. .+..++|||+  |+++++++.|+++++||+.+++...  .+.....|.
T Consensus        34 ~~v~~~d~g~v~v~D~~--t~~v~~~~~~g~-~~~~v~fSpD--G~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~  108 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGS--TYEIKTVLDTGY-AVHISRLSAS--GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR  108 (432)
T ss_dssp             EEEEETTTTEEEEEETT--TCCEEEEEECSS-CEEEEEECTT--SCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred             EEEEEcCCCEEEEEECC--CCcEEEEEeCCC-CeeEEEECCC--CCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCC
Confidence            35899999999999985  457788888774 6899999975  9999999999999999987654321  112223455


Q ss_pred             CceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEe--------eccCCCCeeEEEeCCCCCCCceecccccCC
Q 036510          103 SSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRI--------DQAHPVGVTSVSWAPSTAPGALVGSGFLDP  174 (288)
Q Consensus       103 ~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~--------~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~  174 (288)
                      +.+.+..|+||+ ..+++++..++.|++||...+........        .-.+......+.++|++.            
T Consensus       109 ~~~~s~~~SpDG-~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~------------  175 (432)
T d1qksa2         109 SIETSKMEGWED-KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP------------  175 (432)
T ss_dssp             EEEECCSTTCTT-TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS------------
T ss_pred             CeEEecccCCCC-CEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCC------------
Confidence            566677778884 34568889999999999986543222111        001233455667777652            


Q ss_pred             CceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEe-CCCcEEEEEeecCCCc-----
Q 036510          175 VQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASAS-EDGKVIIWTVAREGDQ-----  248 (288)
Q Consensus       175 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s-~D~~i~iw~~~~~~~~-----  248 (288)
                       .++++.+.++.|.+||....... + +.. ..+......+.|+|++    +++++++ .++.+.+++.......     
T Consensus       176 -~~~vs~~~~~~i~~~d~~~~~~~-~-~~~-i~~g~~~~~~~~spdg----~~~~va~~~~~~v~v~d~~~~~~~~~~~~  247 (432)
T d1qksa2         176 -EFIVNVKETGKILLVDYTDLNNL-K-TTE-ISAERFLHDGGLDGSH----RYFITAANARNKLVVIDTKEGKLVAIEDT  247 (432)
T ss_dssp             -EEEEEETTTTEEEEEETTCSSEE-E-EEE-EECCSSEEEEEECTTS----CEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             -EEEEEEccCCeEEEEEccCCCcc-e-EEE-EcccCccccceECCCC----CEEEEeccccceEEEeecccceEEEEecc
Confidence             45678888899999997654211 1 111 1244567899999985    4555555 4667888887532100     


Q ss_pred             -------c-c--------ceEe---e-----------------ccccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          249 -------W-E--------GKVL---H-----------------DFKTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       249 -------~-~--------~~~~---~-----------------~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                             . .        ....   +                 .+...+....++|+|..+++++.+++.++|..
T Consensus       248 g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~  322 (432)
T d1qksa2         248 GGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVD  322 (432)
T ss_dssp             SSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEE
T ss_pred             CccccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeec
Confidence                   0 0        0000   0                 01124667788888888888888888888863

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.76  E-value=1.1e-15  Score=125.90  Aligned_cols=222  Identities=11%  Similarity=0.085  Sum_probs=152.9

Q ss_pred             EEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEE-EEeeCCCcEEEeecCCCCceEEeEEeecCCCc
Q 036510           26 LATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSIL-ASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSS  104 (288)
Q Consensus        26 l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~  104 (288)
                      .++++.|++|.+||+..  ++.+.++... .....++|+++  |++| ++++.+++|++||+.+..   ....+..+. .
T Consensus         5 yV~~~~~~~v~v~D~~t--~~~~~~i~~g-~~p~~va~spd--G~~l~v~~~~~~~i~v~d~~t~~---~~~~~~~~~-~   75 (301)
T d1l0qa2           5 YIANSESDNISVIDVTS--NKVTATIPVG-SNPMGAVISPD--GTKVYVANAHSNDVSIIDTATNN---VIATVPAGS-S   75 (301)
T ss_dssp             EEEETTTTEEEEEETTT--TEEEEEEECS-SSEEEEEECTT--SSEEEEEEGGGTEEEEEETTTTE---EEEEEECSS-S
T ss_pred             EEEECCCCEEEEEECCC--CeEEEEEECC-CCceEEEEeCC--CCEEEEEECCCCEEEEEECCCCc---eeeeeeccc-c
Confidence            45678899999999854  4667777643 45688999875  7765 688899999999997654   345566554 5


Q ss_pred             eeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecC
Q 036510          105 VNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCD  184 (288)
Q Consensus       105 v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d  184 (288)
                      +..+.|++++ ..+++++..++.+.+|+...+..   .... .+......+.|+|++.             ..++++..+
T Consensus        76 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~dg~-------------~~~~~~~~~  137 (301)
T d1l0qa2          76 PQGVAVSPDG-KQVYVTNMASSTLSVIDTTSNTV---AGTV-KTGKSPLGLALSPDGK-------------KLYVTNNGD  137 (301)
T ss_dssp             EEEEEECTTS-SEEEEEETTTTEEEEEETTTTEE---EEEE-ECSSSEEEEEECTTSS-------------EEEEEETTT
T ss_pred             cccccccccc-ccccccccccceeeeccccccee---eeec-cccccceEEEeecCCC-------------eeeeeeccc
Confidence            6889999985 45667778888999999875422   1222 2334577889999873             455677788


Q ss_pred             CcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeC-CCcEEEEEeecCCCcccceEeeccccCeEE
Q 036510          185 NTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE-DGKVIIWTVAREGDQWEGKVLHDFKTPVYR  263 (288)
Q Consensus       185 ~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~-D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~  263 (288)
                      +.+.+|+..+..    ....+. +...+..+.++|+.    .++++++. ++.+.+|+....    ...........+..
T Consensus       138 ~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  204 (301)
T d1l0qa2         138 KTVSVINTVTKA----VINTVS-VGRSPKGIAVTPDG----TKVYVANFDSMSISVIDTVTN----SVIDTVKVEAAPSG  204 (301)
T ss_dssp             TEEEEEETTTTE----EEEEEE-CCSSEEEEEECTTS----SEEEEEETTTTEEEEEETTTT----EEEEEEECSSEEEE
T ss_pred             cceeeeeccccc----eeeecc-cCCCceEEEeeccc----cceeeecccccccccccccce----eeeecccccCCcce
Confidence            899999987752    233333 23347889999984    45555555 456666664422    11112223455788


Q ss_pred             EEeecCCCEEEEEeC---CCcEEEeEc
Q 036510          264 VSWSLTGNILAVADG---NNNVTLWEE  287 (288)
Q Consensus       264 ~~~spdg~~l~s~~~---d~~v~~w~~  287 (288)
                      ++|+++|+.+++++.   +++|++||.
T Consensus       205 ~~~~~~g~~~~v~~~~~~~~~v~v~D~  231 (301)
T d1l0qa2         205 IAVNPEGTKAYVTNVDKYFNTVSMIDT  231 (301)
T ss_dssp             EEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred             eeccccccccccccccceeeeeeeeec
Confidence            999999998877654   468999995

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.74  E-value=3.2e-15  Score=127.44  Aligned_cols=159  Identities=12%  Similarity=0.013  Sum_probs=104.0

Q ss_pred             cccccceEEEEEcCCCCEEEEee-----CCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEee------
Q 036510            8 TGHEDTVHDVAMDYYGKRLATAS-----SDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCS------   76 (288)
Q Consensus         8 ~~h~~~v~~~~~s~~g~~l~s~~-----~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s------   76 (288)
                      ..++.++..++++|||++++...     .++.+.+||.  .+++.+.++.++...  .++|+++  |++|+.++      
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~--~tg~~~~~~~~~~~~--~~a~SpD--G~~l~va~~~~~~~   90 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDA--GSGSILGHVNGGFLP--NPVAAHS--GSEFALASTSFSRI   90 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEEC--CCCCEEEEEeCCCCc--cEEEcCC--CCEEEEEeecCCcc
Confidence            36788999999999999876542     3355777775  445778888776654  6899875  88887764      


Q ss_pred             ----CCCcEEEeecCCCCceEEeEEeecCCCce-------eEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEee
Q 036510           77 ----FDGTVIIWKEGNSNEWIKDHVFEDHKSSV-------NSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRID  145 (288)
Q Consensus        77 ----~d~~v~iwd~~~~~~~~~~~~~~~h~~~v-------~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~  145 (288)
                          .++.|.+||..++.   ....+..+....       ..+.|+|++...++.....++.+.+|+......       
T Consensus        91 ~~~~~~~~v~v~D~~t~~---~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~-------  160 (373)
T d2madh_          91 AKGKRTDYVEVFDPVTFL---PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSD-------  160 (373)
T ss_pred             cccccceEEEEEECCCCc---EEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeE-------
Confidence                46889999998765   233344444333       345666664333333334556677776543211       


Q ss_pred             ccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCC
Q 036510          146 QAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNG  195 (288)
Q Consensus       146 ~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  195 (288)
                      ..+.....++.++|++.             ..+++.+.|+++.+||...+
T Consensus       161 ~~~~~~~~~~~~s~~g~-------------~~~v~~~~dg~~~~~~~~~~  197 (373)
T d2madh_         161 DQLLSSPTCYHIHPGAP-------------STFYLLCAQGGLAKTDHAGG  197 (373)
T ss_pred             EEEeccceeEEEecCCC-------------cEEEEEcCCCeEEEEEcCCc
Confidence            11223356777888763             56788889999999997543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=4.6e-14  Score=117.78  Aligned_cols=241  Identities=12%  Similarity=0.086  Sum_probs=150.3

Q ss_pred             EEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEE-EEeeCCCcEEEeecCCCCceEEeEEeecCCC
Q 036510           25 RLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSIL-ASCSFDGTVIIWKEGNSNEWIKDHVFEDHKS  103 (288)
Q Consensus        25 ~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~  103 (288)
                      .+++++.|++|++|+++....-.+.+...|.+.+..|+|+|+  |++| +++..|+.|++|++...+..........+..
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spD--G~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~   83 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPD--KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG   83 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTT--SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCC--CCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCC
Confidence            357888999999999964322223333467888999999975  8877 5566699999999875442222222223455


Q ss_pred             ceeEEEeccCCCCeEEEEEe-CCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeE-Ee
Q 036510          104 SVNSIDWAPHELGLCLACGS-SDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLC-SG  181 (288)
Q Consensus       104 ~v~~l~~~p~~~~~~l~sg~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~-s~  181 (288)
                      .+..++|+|+  ++++++++ .++.+.+|+........ ......+...+.++.++|++              ++++ ..
T Consensus        84 ~p~~l~~spD--g~~l~v~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~v~~s~d~--------------~~~~~~~  146 (333)
T d1ri6a_          84 SLTHISTDHQ--GQFVFVGSYNAGNVSVTRLEDGLPVG-VVDVVEGLDGCHSANISPDN--------------RTLWVPA  146 (333)
T ss_dssp             CCSEEEECTT--SSEEEEEETTTTEEEEEEEETTEEEE-EEEEECCCTTBCCCEECTTS--------------SEEEEEE
T ss_pred             CceEEEEcCC--CCEEeecccCCCceeeecccccccee-cccccCCCccceEEEeeecc--------------eeeeccc
Confidence            6788999998  55555554 57789999876543221 22233455667788889887              4444 44


Q ss_pred             ecCCcEEEEEEeCCceeee--eeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcc-cceEee---
Q 036510          182 GCDNTVKVWKLYNGIWKMD--CFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQW-EGKVLH---  255 (288)
Q Consensus       182 ~~d~~i~iwd~~~~~~~~~--~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~-~~~~~~---  255 (288)
                      ..+..|.+|+.........  ..............+.|+++.   ....++....+...+|+........ ....+.   
T Consensus       147 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  223 (333)
T d1ri6a_         147 LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE---QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMP  223 (333)
T ss_dssp             GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTS---SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSC
T ss_pred             cccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccc---eeEEeeccccCceEEEeecccccceeeeeeeeeee
Confidence            4566799999866421111  111112233446789999975   2344555567788888875432211 111111   


Q ss_pred             ---ccccCeEEEEeecCCCEEEEE-eCCCcEEEeEc
Q 036510          256 ---DFKTPVYRVSWSLTGNILAVA-DGNNNVTLWEE  287 (288)
Q Consensus       256 ---~~~~~i~~~~~spdg~~l~s~-~~d~~v~~w~~  287 (288)
                         ........++++|||++++.+ ..++++.+|+.
T Consensus       224 ~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~  259 (333)
T d1ri6a_         224 ENFSDTRWAADIHITPDGRHLYACDRTASLITVFSV  259 (333)
T ss_dssp             TTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             cCCCccccceeEEEecccCceeeecccCCeEEEEEE
Confidence               112356788999999976655 45778999874

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.65  E-value=2e-15  Score=127.68  Aligned_cols=253  Identities=11%  Similarity=0.055  Sum_probs=145.3

Q ss_pred             EEEcCCCCEEEEee-----CCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEe----------eCCCcE
Q 036510           17 VAMDYYGKRLATAS-----SDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASC----------SFDGTV   81 (288)
Q Consensus        17 ~~~s~~g~~l~s~~-----~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----------s~d~~v   81 (288)
                      .+.+|||++++...     .+.++.+||..  +++.+.++..+..+  .++|+++  |++|+..          +.|+.|
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~--tg~~~~~~~~g~~~--~~a~SpD--g~~l~v~~~~~~~~~~g~~d~~v   80 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGE--AGRVIGMIDGGFLP--NPVVADD--GSFIAHASTVFSRIARGERTDYV   80 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETT--TTEEEEEEEECSSC--EEEECTT--SSCEEEEEEEEEETTEEEEEEEE
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECC--CCcEEEEEECCCCC--ceEEcCC--CCEEEEEeCCCccccccCCCCEE
Confidence            35689999887653     45679999974  45777777766544  6899975  7766543          458899


Q ss_pred             EEeecCCCCceEEeEEeecCC-------CceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeecc----CCC
Q 036510           82 IIWKEGNSNEWIKDHVFEDHK-------SSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQA----HPV  150 (288)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~-------~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~----~~~  150 (288)
                      ++||..++..   ...+..+.       .....+.|+|++...+++..+.+..+.+|+...+...........    -..
T Consensus        81 ~v~D~~t~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (355)
T d2bbkh_          81 EVFDPVTLLP---TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTA  157 (355)
T ss_dssp             EEECTTTCCE---EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEE
T ss_pred             EEEECCCCCE---EEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecC
Confidence            9999987652   22222221       223567899985322333335667889998875432111110000    001


Q ss_pred             CeeEEEeCCCCCCCce----------e--------------cccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccc
Q 036510          151 GVTSVSWAPSTAPGAL----------V--------------GSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQ  206 (288)
Q Consensus       151 ~v~~i~~~p~~~~~~~----------~--------------~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  206 (288)
                      ....+.+++++....+          .              ...+..+...++.++.++.+.+|++..+..  ..+....
T Consensus       158 ~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~  235 (355)
T d2bbkh_         158 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA--KFLPAVE  235 (355)
T ss_dssp             TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC--EECCCEE
T ss_pred             CcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcE--EEEeccC
Confidence            1223444554421100          0              011233456678888999999999876521  1111111


Q ss_pred             cCC----------cceEEEEecCCCCCCCcEEEEEeCC----------CcEEEEEeecCCCcccceEeeccccCeEEEEe
Q 036510          207 MHT----------DWVRDVAWAPNLGLPKSTIASASED----------GKVIIWTVAREGDQWEGKVLHDFKTPVYRVSW  266 (288)
Q Consensus       207 ~h~----------~~V~~v~~sp~~~~~~~~l~s~s~D----------~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~  266 (288)
                      .+.          .....+.++|+.    ..+...+.+          ..|.+||....+.   ...+ .....+.+++|
T Consensus       236 ~~~~~~~~~~~~p~~~~~~~~~~d~----~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~---~~~~-~~~~~~~~~a~  307 (355)
T d2bbkh_         236 ALTEAERADGWRPGGWQQVAYHRAL----DRIYLLVDQRDEWRHKTASRFVVVLDAKTGER---LAKF-EMGHEIDSINV  307 (355)
T ss_dssp             SSCHHHHHTTEEECSSSCEEEETTT----TEEEEEEEECCTTCTTSCEEEEEEEETTTCCE---EEEE-EEEEEECEEEE
T ss_pred             CcccceEeeeeeccceEEEEEeCCC----CeEEEEeccCCceeecCCCCeEEEEeCCCCcE---EEEe-cCCCCEEEEEE
Confidence            111          122346777764    334433322          3688998765321   1111 22356789999


Q ss_pred             ecCCC--EEEEEeCCCcEEEeEcC
Q 036510          267 SLTGN--ILAVADGNNNVTLWEEA  288 (288)
Q Consensus       267 spdg~--~l~s~~~d~~v~~w~~~  288 (288)
                      +|||+  +++++..|++|+|||.+
T Consensus       308 spDG~~~l~v~~~~d~~i~v~D~~  331 (355)
T d2bbkh_         308 SQDEKPLLYALSTGDKTLYIHDAE  331 (355)
T ss_dssp             CCSSSCEEEEEETTTTEEEEEETT
T ss_pred             cCCCCeEEEEEECCCCEEEEEECC
Confidence            99998  35666779999999953

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.63  E-value=4.8e-14  Score=117.50  Aligned_cols=210  Identities=13%  Similarity=0.105  Sum_probs=127.5

Q ss_pred             ccceEEEEEcCCCCEE-EEeeCCCcEEEEEeCCCCceeeEEEeccc-----cCeEEEEecCCCCCCEEEEee--------
Q 036510           11 EDTVHDVAMDYYGKRL-ATASSDYSIKIIGVGNNTSQHLAKLSGHK-----GAVWEVAWAHPKFGSILASCS--------   76 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l-~s~~~d~~i~lwd~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~~l~s~s--------   76 (288)
                      ...+.+++|+|||++| ++++.++.|.+||+..  ++.+..+..+.     ..+..++|+++  +.+++.+.        
T Consensus        33 ~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t--~~~~~~~~~~~~~~~~~~~~~v~~s~d--g~~l~~~~~~~~~~~~  108 (337)
T d1pbyb_          33 GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT--GETLGRIDLSTPEERVKSLFGAALSPD--GKTLAIYESPVRLELT  108 (337)
T ss_dssp             TTCCCCEEECTTSSEEEEEETTTTEEEEEETTT--CCEEEEEECCBTTEEEECTTCEEECTT--SSEEEEEEEEEEECSS
T ss_pred             CCCccEEEECCCCCEEEEEECCCCeEEEEECCC--CcEEEEEecCCCcccccceeeEEEcCC--CcEEEEeecCCcceee
Confidence            3556789999999987 5677899999999864  35566665543     33456888864  77777665        


Q ss_pred             ----CCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEee-------
Q 036510           77 ----FDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRID-------  145 (288)
Q Consensus        77 ----~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~-------  145 (288)
                          .+..+.+||..+..   ....+. +...+.+++|+|+  +.++++++.  .+.+||...+.........       
T Consensus       109 ~~~~~~~~~~~~d~~~~~---~~~~~~-~~~~~~~~~~s~d--g~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~  180 (337)
T d1pbyb_         109 HFEVQPTRVALYDAETLS---RRKAFE-APRQITMLAWARD--GSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETY  180 (337)
T ss_dssp             CEEECCCEEEEEETTTTE---EEEEEE-CCSSCCCEEECTT--SSCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTB
T ss_pred             eccccccceeeccccCCe---EEEecc-ccCCceEEEEcCC--CCEEEEEcC--CcceeeeecCcEEEEeecCCccccce
Confidence                46778888876543   333444 3456889999998  556666654  4667887543211000000       


Q ss_pred             ----------c----------------------------------cCCCCeeEEEeCCCCCCCceecccccCCCceeEEe
Q 036510          146 ----------Q----------------------------------AHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSG  181 (288)
Q Consensus       146 ----------~----------------------------------~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~  181 (288)
                                .                                  .+...+....+.|...  ......+..+..+++..
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  258 (337)
T d1pbyb_         181 AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV--FYFSTAVNPAKTRAFGA  258 (337)
T ss_dssp             CCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSS--CEEEEEECTTSSEEEEE
T ss_pred             ecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCc--ceEEEEecccceEEEEc
Confidence                      0                                  0000011111111100  00011112233444433


Q ss_pred             ecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC
Q 036510          182 GCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE  245 (288)
Q Consensus       182 ~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~  245 (288)
                        ++.|++||+.++.    .+..+ .+...+.++.|+|++    ++|++++.|++|++||.+..
T Consensus       259 --~~~i~v~d~~~~~----~~~~~-~~~~~~~~~~~s~dG----~~l~v~~~~~~i~v~D~~t~  311 (337)
T d1pbyb_         259 --YNVLESFDLEKNA----SIKRV-PLPHSYYSVNVSTDG----STVWLGGALGDLAAYDAETL  311 (337)
T ss_dssp             --ESEEEEEETTTTE----EEEEE-ECSSCCCEEEECTTS----CEEEEESBSSEEEEEETTTC
T ss_pred             --cccEEEEECCCCc----EEEEE-cCCCCEEEEEECCCC----CEEEEEeCCCcEEEEECCCC
Confidence              6899999998763    33332 245568999999984    78999999999999998753

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.50  E-value=1.2e-11  Score=104.72  Aligned_cols=231  Identities=11%  Similarity=-0.020  Sum_probs=130.5

Q ss_pred             EEEEcCCCCEEEEeeC----------CCcEEEEEeCCCCceeeEEEeccccCe-------EEEEecCCCCCCEE--EEee
Q 036510           16 DVAMDYYGKRLATASS----------DYSIKIIGVGNNTSQHLAKLSGHKGAV-------WEVAWAHPKFGSIL--ASCS   76 (288)
Q Consensus        16 ~~~~s~~g~~l~s~~~----------d~~i~lwd~~~~~~~~~~~~~~h~~~v-------~~~~~~~~~~~~~l--~s~s   76 (288)
                      .+.|+|||++|+.++.          ++.|++||...  .+.+..+..+....       ..+.|+++  ++.+  ....
T Consensus        70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t--~~~~~~~~~~~~~~~~~~~~~~~~~~s~d--g~~~~v~~~~  145 (373)
T d2madh_          70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT--FLPIADIELPDAPRFDVGPYSWMNANTPN--NADLLFFQFA  145 (373)
T ss_pred             cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCC--CcEEEEEecCCcceeEeccCCCcEEEEeC--CCcEEEEEEc
Confidence            5789999999988753          57899999854  35566666555443       33555544  3333  3334


Q ss_pred             CCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEee---ccCCCCee
Q 036510           77 FDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRID---QAHPVGVT  153 (288)
Q Consensus        77 ~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~v~  153 (288)
                      .++.+.+|+.....       ...+.....++.++|++ ...+++.+.|+.+.+|+.............   ..+.....
T Consensus       146 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~s~~g-~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (373)
T d2madh_         146 AGPAVGLVVQGGSS-------DDQLLSSPTCYHIHPGA-PSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQ  217 (373)
T ss_pred             CCCceEEeeccCCe-------EEEEeccceeEEEecCC-CcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceee
Confidence            56677777765432       11233456788888885 345677888999999987543211110000   00000000


Q ss_pred             EEEeC-------------------------------------------CCCCCCcee------cccccCCCceeEEeecC
Q 036510          154 SVSWA-------------------------------------------PSTAPGALV------GSGFLDPVQKLCSGGCD  184 (288)
Q Consensus       154 ~i~~~-------------------------------------------p~~~~~~~~------~~~~~~~~~~l~s~~~d  184 (288)
                      .+.+.                                           |........      ......+...+++...+
T Consensus       218 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  297 (373)
T d2madh_         218 PAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAA  297 (373)
T ss_pred             eEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCC
Confidence            11111                                           100000000      00011223455666777


Q ss_pred             CcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEE
Q 036510          185 NTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRV  264 (288)
Q Consensus       185 ~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~  264 (288)
                      +.+.+||..++.    .+..+ .+...+.++.|+||+.  ..++++++.|++|++||+...+   ....+..++.....+
T Consensus       298 ~~v~~~d~~t~~----~~~~~-~~~~~~~~~a~spDG~--~~l~vt~~~d~~v~v~D~~tg~---~~~~~~~~g~~P~~l  367 (373)
T d2madh_         298 KEVTSVTGLVGQ----TSSQI-SLGHDVDAISVAQDGG--PDLYALSAGTEVLHIYDAGAGD---QDQSTVELGSGPQVL  367 (373)
T ss_pred             CeEEEEECCCCc----EEEEe-cCCCCeeEEEECCCCC--EEEEEEeCCCCeEEEEECCCCC---EEEEECCCCCCCcEE
Confidence            889999988763    23332 2455689999999852  1246789999999999997643   224444555555666


Q ss_pred             Eeec
Q 036510          265 SWSL  268 (288)
Q Consensus       265 ~~sp  268 (288)
                      ++-+
T Consensus       368 ~~~~  371 (373)
T d2madh_         368 SVMN  371 (373)
T ss_pred             EEec
Confidence            6544

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.41  E-value=1.8e-11  Score=101.89  Aligned_cols=212  Identities=9%  Similarity=-0.050  Sum_probs=117.9

Q ss_pred             ccccceEEEEEcCCCCEE-EEeeCCCcEEEEEeCCCCceeeEEEecc------ccCeEEEEecCCCCCCEEEEee-----
Q 036510            9 GHEDTVHDVAMDYYGKRL-ATASSDYSIKIIGVGNNTSQHLAKLSGH------KGAVWEVAWAHPKFGSILASCS-----   76 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~l-~s~~~d~~i~lwd~~~~~~~~~~~~~~h------~~~v~~~~~~~~~~~~~l~s~s-----   76 (288)
                      .|...+.+++|+|||++| ++++.++.|.+||+..  ++.+..+...      ...+..++|+++  |++++.++     
T Consensus        37 ~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t--~~~~~~~~~~~~~~~~~~~~~~v~~s~D--G~~l~v~~~~~~~  112 (346)
T d1jmxb_          37 PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT--CKNTFHANLSSVPGEVGRSMYSFAISPD--GKEVYATVNPTQR  112 (346)
T ss_dssp             SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT--TEEEEEEESCCSTTEEEECSSCEEECTT--SSEEEEEEEEEEE
T ss_pred             CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCcc--CeeeeeecccccccccCCceEEEEEecC--CCEEEEEecCCcc
Confidence            456667899999999886 5666889999999854  3445444322      233567888865  77776554     


Q ss_pred             -------CCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCC
Q 036510           77 -------FDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHP  149 (288)
Q Consensus        77 -------~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~  149 (288)
                             .++.+.+|+..++......... .....+..+.++++  +.+++++   +.+.+|+..++......   ..+.
T Consensus       113 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~  183 (346)
T d1jmxb_         113 LNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAADD--GSLYVAG---PDIYKMDVKTGKYTVAL---PLRN  183 (346)
T ss_dssp             CSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECTT--SCEEEES---SSEEEECTTTCCEEEEE---CSTT
T ss_pred             eeeeeccCcceEEEEecccceeeeEEEee-eccCceEEEEecCC--CEEEEeC---CcceEEEccCCCEEEEE---ecCC
Confidence                   5778888887654321111111 11233455555554  3433332   34667766543211100   0000


Q ss_pred             CCeeEEEeCCCCCC-------------------------------------------------------CceecccccCC
Q 036510          150 VGVTSVSWAPSTAP-------------------------------------------------------GALVGSGFLDP  174 (288)
Q Consensus       150 ~~v~~i~~~p~~~~-------------------------------------------------------~~~~~~~~~~~  174 (288)
                       ....+.++|++..                                                       ..........+
T Consensus       184 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (346)
T d1jmxb_         184 -WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPK  262 (346)
T ss_dssp             -CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSS
T ss_pred             -CccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCC
Confidence             0000011111000                                                       00001111223


Q ss_pred             CceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510          175 VQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR  244 (288)
Q Consensus       175 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~  244 (288)
                      +..++... ++.|++||..++.    .+..+. +...+.+++|+||+    ++|++++.|+.|++||+++
T Consensus       263 ~~~~~~~~-~~~v~v~d~~~~~----~~~~~~-~~~~~~~va~s~DG----~~l~v~~~d~~v~v~D~~t  322 (346)
T d1jmxb_         263 DPNQIYGV-LNRLAKYDLKQRK----LIKAAN-LDHTYYCVAFDKKG----DKLYLGGTFNDLAVFNPDT  322 (346)
T ss_dssp             CTTEEEEE-ESEEEEEETTTTE----EEEEEE-CSSCCCEEEECSSS----SCEEEESBSSEEEEEETTT
T ss_pred             CCEEEEec-CCeEEEEECCCCc----EEEEEc-CCCCEEEEEEcCCC----CEEEEEeCCCcEEEEECcc
Confidence            34455444 4579999987763    333332 33458999999984    6799999999999999875

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.36  E-value=1.6e-10  Score=101.28  Aligned_cols=118  Identities=15%  Similarity=0.239  Sum_probs=80.6

Q ss_pred             ccccccceEEEEEcCCCCEEEEeeC---------CCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeC
Q 036510            7 ETGHEDTVHDVAMDYYGKRLATASS---------DYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSF   77 (288)
Q Consensus         7 ~~~h~~~v~~~~~s~~g~~l~s~~~---------d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~   77 (288)
                      +..|...|.+++|||||++|+.++.         ++.+.|||+..+   .+..+..|...+..+.|||+  |+.+|.. .
T Consensus        57 ~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~---~~~~l~~~~~~~~~~~~SPD--G~~ia~~-~  130 (470)
T d2bgra1          57 FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR---QLITEERIPNNTQWVTWSPV--GHKLAYV-W  130 (470)
T ss_dssp             TTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT---EECCSSCCCTTEEEEEECSS--TTCEEEE-E
T ss_pred             hhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCC---cccccccCCccccccccccC--cceeeEe-e
Confidence            4467788999999999999998753         567889998643   35567888999999999975  8899985 4


Q ss_pred             CCcEEEeecCCCCceEEeEE------ee---------cCCCceeEEEeccCCCCeEEEEEeCCCc-EEEEe
Q 036510           78 DGTVIIWKEGNSNEWIKDHV------FE---------DHKSSVNSIDWAPHELGLCLACGSSDGN-ISVFT  132 (288)
Q Consensus        78 d~~v~iwd~~~~~~~~~~~~------~~---------~h~~~v~~l~~~p~~~~~~l~sg~~d~~-i~i~d  132 (288)
                      ++.+.+|+...+........      +.         .+.+....+.|+||  +..++....|.. +..|.
T Consensus       131 ~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPD--Gk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         131 NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPN--GTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTT--SSEEEEEEEECTTCCEEE
T ss_pred             cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCC--CCccceeEecCCcCceEE
Confidence            67899998866543211100      00         12234566889998  556666654432 44443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.34  E-value=2.8e-11  Score=102.84  Aligned_cols=235  Identities=9%  Similarity=-0.031  Sum_probs=126.6

Q ss_pred             EEEEcCCCCEEEEee----------CCCcEEEEEeCCCCceeeEEEeccccC-------eEEEEecCCCCCCEEEEee-C
Q 036510           16 DVAMDYYGKRLATAS----------SDYSIKIIGVGNNTSQHLAKLSGHKGA-------VWEVAWAHPKFGSILASCS-F   77 (288)
Q Consensus        16 ~~~~s~~g~~l~s~~----------~d~~i~lwd~~~~~~~~~~~~~~h~~~-------v~~~~~~~~~~~~~l~s~s-~   77 (288)
                      .+.|+|||+.|+.++          .|++|++||...  .+.+..+..|...       ...++|+++  |++|+.+. .
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t--~~~~~~i~~p~~~~~~~g~~p~~~a~SpD--Gk~l~va~~~  144 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT--FLPIADIELPDAPRFSVGPRVHIIGNCAS--SACLLFFLFG  144 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT--CCEEEEEEETTSCSCCBSCCTTSEEECTT--SSCEEEEECS
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCC--CcEeeeecCCccceecccCCccceEECCC--CCEEEEEeCC
Confidence            478999999887754          478899999753  3555555543321       235889875  77777665 6


Q ss_pred             CCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEE---eeccCCCCeeE
Q 036510           78 DGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSR---IDQAHPVGVTS  154 (288)
Q Consensus        78 d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~---~~~~~~~~v~~  154 (288)
                      ++++.+||+.+..   ....+..+....    +.|.+ ...++..+.||.+.+++...........   ....+...+..
T Consensus       145 ~~~v~~~d~~~~~---~~~~~~~~~~~~----~~~~~-~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (368)
T d1mdah_         145 SSAAAGLSVPGAS---DDQLTKSASCFH----IHPGA-AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQA  216 (368)
T ss_dssp             SSCEEEEEETTTE---EEEEEECSSCCC----CEEEE-TTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCC
T ss_pred             CCeEEEEECCCCc---EeEEeeccCcce----EccCC-CceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceee
Confidence            7999999998754   233343333221    12222 2345667788888888876543221111   11122233334


Q ss_pred             EEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccc----------cCCcceEEEEecCCCCCC
Q 036510          155 VSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQ----------MHTDWVRDVAWAPNLGLP  224 (288)
Q Consensus       155 i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----------~h~~~V~~v~~sp~~~~~  224 (288)
                      ..+.+++              ..+.+.  .+.+.+++...+...  ......          ........+.++|+.   
T Consensus       217 ~~~~~~g--------------~~~~~~--~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~---  275 (368)
T d1mdah_         217 AQANYPG--------------MLVWAV--ASSILQGDIPAAGAT--MKAAIDGNESGRKADNFRSAGFQMVAKLKNT---  275 (368)
T ss_dssp             EEETTTT--------------EEEECB--SSCCEEEECCSSCCE--EECCCCSSCTHHHHTTEEECSSSCEEEETTT---
T ss_pred             cccccCc--------------EEEEec--CCCEEEEeecCCceE--EEeecccccceeeeeeecCCCceeEEEcCCC---
Confidence            4455443              222222  233444443322100  000000          011112346677764   


Q ss_pred             CcEEEEEeCC--------CcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCE--EEEEeCCCcEEEeEc
Q 036510          225 KSTIASASED--------GKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNI--LAVADGNNNVTLWEE  287 (288)
Q Consensus       225 ~~~l~s~s~D--------~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~--l~s~~~d~~v~~w~~  287 (288)
                      ...+++...+        ..|.+||....+..   .. -.....+.+++|+|||+.  ++++..|++|+|||.
T Consensus       276 ~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~---~~-~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~  344 (368)
T d1mdah_         276 DGIMILTVEHSRSCLAAAENTSSVTASVGQTS---GP-ISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDA  344 (368)
T ss_dssp             TEEEEEEEECSSCTTSCEEEEEEEESSSCCEE---EC-CEEEEEECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred             CEEEEEecCCCceeecCCceEEEEECCCCcEe---EE-ecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEEC
Confidence            2233332222        35888887654211   11 122356888999999973  456677899999995

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.32  E-value=1.2e-11  Score=103.87  Aligned_cols=222  Identities=11%  Similarity=0.035  Sum_probs=121.2

Q ss_pred             EEEEEcCCCCEEEEee----------CCCcEEEEEeCCCCceeeEEEecccc-------CeEEEEecCCCCCCEEEEe--
Q 036510           15 HDVAMDYYGKRLATAS----------SDYSIKIIGVGNNTSQHLAKLSGHKG-------AVWEVAWAHPKFGSILASC--   75 (288)
Q Consensus        15 ~~~~~s~~g~~l~s~~----------~d~~i~lwd~~~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~~~l~s~--   75 (288)
                      ..++|||||++|+.++          .|+.|++||....  +.+..+..+..       ....++|+++  +..++.+  
T Consensus        50 ~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~--~~~~~~~~~~~~~~~~~~~~~~~~~s~d--g~~~~v~~~  125 (355)
T d2bbkh_          50 PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL--LPTADIELPDAPRFLVGTYPWMTSLTPD--GKTLLFYQF  125 (355)
T ss_dssp             CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--CEEEEEEETTCCCCCBSCCGGGEEECTT--SSEEEEEEC
T ss_pred             CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCC--CEEEEEecCCcceeecCCCCceEEEecC--CCeeEEecC
Confidence            3679999999887643          4789999998543  44444443322       2245788865  6665544  


Q ss_pred             eCCCcEEEeecCCCCceEEeEEeec---------------------------------------------CCCceeEEEe
Q 036510           76 SFDGTVIIWKEGNSNEWIKDHVFED---------------------------------------------HKSSVNSIDW  110 (288)
Q Consensus        76 s~d~~v~iwd~~~~~~~~~~~~~~~---------------------------------------------h~~~v~~l~~  110 (288)
                      +.+..+.+|+..+....   ..+..                                             +...+....+
T Consensus       126 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (355)
T d2bbkh_         126 SPAPAVGVVDLEGKAFK---RMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAY  202 (355)
T ss_dssp             SSSCEEEEEETTTTEEE---EEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEE
T ss_pred             CCCceeeeeecCCCcEe---eEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccc
Confidence            56778899988654311   11110                                             1111222233


Q ss_pred             ccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCC----------CCeeEEEeCCCCCCCceecccccCCCceeEE
Q 036510          111 APHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHP----------VGVTSVSWAPSTAPGALVGSGFLDPVQKLCS  180 (288)
Q Consensus       111 ~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~----------~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s  180 (288)
                      .++  +..++.++.++.+.+|+...+... .......+.          .....+.++|++              ..++.
T Consensus       203 ~~~--~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~--------------~~~~~  265 (355)
T d2bbkh_         203 SQK--AGRLVWPTYTGKIHQIDLSSGDAK-FLPAVEALTEAERADGWRPGGWQQVAYHRAL--------------DRIYL  265 (355)
T ss_dssp             ETT--TTEEEEEBTTSEEEEEECTTSSCE-ECCCEESSCHHHHHTTEEECSSSCEEEETTT--------------TEEEE
T ss_pred             cCC--CCeEEEecCCCeEEEEecCCCcEE-EEeccCCcccceEeeeeeccceEEEEEeCCC--------------CeEEE
Confidence            332  234566677778888877654321 111111111          112234445544              22222


Q ss_pred             ee----------cCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCccc
Q 036510          181 GG----------CDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWE  250 (288)
Q Consensus       181 ~~----------~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~  250 (288)
                      .+          ..+.|.+||..++.    .+..+. +...+.++.|+||+.  ..++++++.|++|++||++..+   .
T Consensus       266 ~~~~~~~~~~~~~~~~v~v~d~~t~~----~~~~~~-~~~~~~~~a~spDG~--~~l~v~~~~d~~i~v~D~~tg~---~  335 (355)
T d2bbkh_         266 LVDQRDEWRHKTASRFVVVLDAKTGE----RLAKFE-MGHEIDSINVSQDEK--PLLYALSTGDKTLYIHDAESGE---E  335 (355)
T ss_dssp             EEEECCTTCTTSCEEEEEEEETTTCC----EEEEEE-EEEEECEEEECCSSS--CEEEEEETTTTEEEEEETTTCC---E
T ss_pred             EeccCCceeecCCCCeEEEEeCCCCc----EEEEec-CCCCEEEEEEcCCCC--eEEEEEECCCCEEEEEECCCCC---E
Confidence            21          12468999987763    222332 234578999999852  1256778889999999987542   1


Q ss_pred             ceEeeccccCeEEEEeecCC
Q 036510          251 GKVLHDFKTPVYRVSWSLTG  270 (288)
Q Consensus       251 ~~~~~~~~~~i~~~~~spdg  270 (288)
                      ...+..++.....+.+.++|
T Consensus       336 ~~~i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         336 LRSVNQLGHGPQVITTADMG  355 (355)
T ss_dssp             EEEECCCCSSCCEEECCCCC
T ss_pred             EEEEeCcCCCccEEEeCCCC
Confidence            23344444444455554443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.13  E-value=3.8e-08  Score=80.99  Aligned_cols=232  Identities=11%  Similarity=-0.011  Sum_probs=139.2

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCce
Q 036510           13 TVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEW   92 (288)
Q Consensus        13 ~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~   92 (288)
                      .+..++++|||+++++...+++|..++.+..    ...+......+.+++|.++  |+++++...++.+..++.......
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~----~~~~~~~~~~~~gla~~~d--G~l~v~~~~~~~~~~~~~~~~~~~  102 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN----QQIHATVEGKVSGLAFTSN--GDLVATGWNADSIPVVSLVKSDGT  102 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC----EEEEEECSSEEEEEEECTT--SCEEEEEECTTSCEEEEEECTTSC
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC----EEEEEcCCCCcceEEEcCC--CCeEEEecCCceEEEEEecccccc
Confidence            5778999999999999998998777664322    2334445667899999864  889998888888888876443211


Q ss_pred             EEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeec--------cCCCCeeEEEeCCCCCCC
Q 036510           93 IKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQ--------AHPVGVTSVSWAPSTAPG  164 (288)
Q Consensus        93 ~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~--------~~~~~v~~i~~~p~~~~~  164 (288)
                      .............+.+.+.++  +.++++-+.++.+..++...+.. .......        ........+.++.     
T Consensus       103 ~~~~~~~~~~~~~n~i~~~~~--g~~~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ngi~~~~-----  174 (302)
T d2p4oa1         103 VETLLTLPDAIFLNGITPLSD--TQYLTADSYRGAIWLIDVVQPSG-SIWLEHPMLARSNSESVFPAANGLKRFG-----  174 (302)
T ss_dssp             EEEEEECTTCSCEEEEEESSS--SEEEEEETTTTEEEEEETTTTEE-EEEEECGGGSCSSTTCCSCSEEEEEEET-----
T ss_pred             eeeccccCCccccceeEEccC--CCEEeeccccccceeeeccCCcc-eeEecCCccceeeccCcccccccccccC-----
Confidence            111111123456788888887  67777777777777777654311 1111000        0001122233322     


Q ss_pred             ceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeec
Q 036510          165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAR  244 (288)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~  244 (288)
                                ..++++.+..+.|..++....... ....... .......++|.+++    ++.++...++.|..++...
T Consensus       175 ----------~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~~~-~~~~pdgia~d~dG----~l~va~~~~~~V~~i~p~G  238 (302)
T d2p4oa1         175 ----------NFLYVSNTEKMLLLRIPVDSTDKP-GEPEIFV-EQTNIDDFAFDVEG----NLYGATHIYNSVVRIAPDR  238 (302)
T ss_dssp             ----------TEEEEEETTTTEEEEEEBCTTSCB-CCCEEEE-ESCCCSSEEEBTTC----CEEEECBTTCCEEEECTTC
T ss_pred             ----------CceeeecCCCCeEEeccccccccc-ccccccc-CCCCCcceEECCCC----CEEEEEcCCCcEEEECCCC
Confidence                      245667777888887776543211 1111111 12224568888874    6777777888888886542


Q ss_pred             CCCcccceEeecc---ccCeEEEEe---ecCCCEEEEEeCC
Q 036510          245 EGDQWEGKVLHDF---KTPVYRVSW---SLTGNILAVADGN  279 (288)
Q Consensus       245 ~~~~~~~~~~~~~---~~~i~~~~~---spdg~~l~s~~~d  279 (288)
                      .     ...+.+.   -...++++|   +||++.|.+++..
T Consensus       239 ~-----~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         239 S-----TTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             C-----EEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             C-----EEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            1     1222222   234789999   7899988776543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.09  E-value=1.2e-07  Score=80.20  Aligned_cols=255  Identities=9%  Similarity=-0.025  Sum_probs=135.1

Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEE-eccccCeEEEEecCCCCCC--EEEEee-CCCcEEEeec
Q 036510           11 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKL-SGHKGAVWEVAWAHPKFGS--ILASCS-FDGTVIIWKE   86 (288)
Q Consensus        11 ~~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~--~l~s~s-~d~~v~iwd~   86 (288)
                      ...+..++|++++++|.+++. +.+..|.++... ..+... .........+.++++  ++  +++++. ..++|..+..
T Consensus        39 ~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~-~~~~~~~~~~~~~p~~v~~~~~--~~~~~v~~a~~~~~~v~~~~~  114 (365)
T d1jofa_          39 DEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPT-EIVHEASHPIGGHPRANDADTN--TRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETT-EEEEEEEEECCSSGGGGCTTSC--CEEEEEEECSSTTCCEEEEEE
T ss_pred             CCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCC-CeEEEeeecCCCCcEEEEECCC--CCEEEEEEecCCCCEEEEeEc
Confidence            344566899999999988765 467778775332 222111 111122334555443  44  233322 2344444332


Q ss_pred             CCCC------------ceE-EeEEe-ecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEee--ccCCC
Q 036510           87 GNSN------------EWI-KDHVF-EDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRID--QAHPV  150 (288)
Q Consensus        87 ~~~~------------~~~-~~~~~-~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~--~~~~~  150 (288)
                      ....            ... ..... ......+.++.|+|++ ..++++......|.+|+....+........  .....
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG-~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~  193 (365)
T d1jofa_         115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD  193 (365)
T ss_dssp             SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred             cCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCC-CEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCC
Confidence            1111            000 00000 0122236799999984 233444444568888887655433222211  12345


Q ss_pred             CeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCcee-eeeeec--------------cccCCcceEEE
Q 036510          151 GVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWK-MDCFPA--------------LQMHTDWVRDV  215 (288)
Q Consensus       151 ~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~--------------~~~h~~~V~~v  215 (288)
                      ....+.|+|+++             .+.++...+++|.+||+..+... ......              ...+......+
T Consensus       194 gPr~i~f~pdg~-------------~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  260 (365)
T d1jofa_         194 HPRWVAMHPTGN-------------YLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVC  260 (365)
T ss_dssp             CEEEEEECTTSS-------------EEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEE
T ss_pred             ceEEEEECCCCc-------------eEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccce
Confidence            678899999873             34466777889999998664211 001110              01222345678


Q ss_pred             EecCCCCCCCcEEEEEe-CCCc-----EEEEEeecCCCcccceEee---ccccCeEEEEeec-CCCEEEEEe-CCCcEEE
Q 036510          216 AWAPNLGLPKSTIASAS-EDGK-----VIIWTVAREGDQWEGKVLH---DFKTPVYRVSWSL-TGNILAVAD-GNNNVTL  284 (288)
Q Consensus       216 ~~sp~~~~~~~~l~s~s-~D~~-----i~iw~~~~~~~~~~~~~~~---~~~~~i~~~~~sp-dg~~l~s~~-~d~~v~~  284 (288)
                      .++|++    ++|.++. .+..     |..|++...........+.   ........++|+| +|++|+++. .+++|.+
T Consensus       261 ~~spdG----~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v  336 (365)
T d1jofa_         261 ALTFSG----KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEI  336 (365)
T ss_dssp             EECTTS----SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEE
T ss_pred             EECCCC----CEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEE
Confidence            999985    4555543 2333     7777765432211111111   1234567799998 899887774 6789999


Q ss_pred             eEc
Q 036510          285 WEE  287 (288)
Q Consensus       285 w~~  287 (288)
                      |++
T Consensus       337 ~~~  339 (365)
T d1jofa_         337 YRW  339 (365)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            974

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.02  E-value=4.9e-09  Score=91.62  Aligned_cols=221  Identities=10%  Similarity=0.058  Sum_probs=131.2

Q ss_pred             EEEEcCCCCEEEEeeCCCcEEEEEeCCCCceee---EEEeccccCeEEEEecCCCCCCEEEEeeC---------CCcEEE
Q 036510           16 DVAMDYYGKRLATASSDYSIKIIGVGNNTSQHL---AKLSGHKGAVWEVAWAHPKFGSILASCSF---------DGTVII   83 (288)
Q Consensus        16 ~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~---~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---------d~~v~i   83 (288)
                      .+.|.++++++..  .|+.+.+||+..+....+   .++..|...|.++.||||  +++|+.++.         ++.+.|
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpD--g~~i~~~~~~~~~~r~s~~~~~~l   96 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPD--GQFILLEYNYVKQWRHSYTASYDI   96 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTT--SSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCC--CCEEEEEECCcceeeeccCceEEE
Confidence            4678999987764  478899999865432221   123445578999999975  899988754         567889


Q ss_pred             eecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEee---------------ccC
Q 036510           84 WKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRID---------------QAH  148 (288)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~---------------~~~  148 (288)
                      ||+.++.    ...+..|...+..+.|+||  +..+|.. .++.+.+|+...+.........               +..
T Consensus        97 ~d~~~~~----~~~l~~~~~~~~~~~~SPD--G~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~  169 (470)
T d2bgra1          97 YDLNKRQ----LITEERIPNNTQWVTWSPV--GHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV  169 (470)
T ss_dssp             EETTTTE----ECCSSCCCTTEEEEEECSS--TTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred             EECCCCc----ccccccCCccccccccccC--cceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeee
Confidence            9997653    3346678888999999999  5556664 5678999988765433221100               011


Q ss_pred             CCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCc-EEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcE
Q 036510          149 PVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNT-VKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKST  227 (288)
Q Consensus       149 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~  227 (288)
                      ......+.|||++              +.|+....|.+ ++.|.+....       ........+..+.+...+      
T Consensus       170 ~~~~~~~~wSPDG--------------k~ia~~~~d~~~v~~~~~~~~~-------~~~~~~~~~~~~~~~~~g------  222 (470)
T d2bgra1         170 FSAYSALWWSPNG--------------TFLAYAQFNDTEVPLIEYSFYS-------DESLQYPKTVRVPYPKAG------  222 (470)
T ss_dssp             SSSSBCEEECTTS--------------SEEEEEEEECTTCCEEEEEECC-------STTCSSCEEEEEECCBTT------
T ss_pred             cCCccccEECCCC--------------CccceeEecCCcCceEEEEeec-------cCCCCCCeeeeecccccc------
Confidence            2234557799987              67777766654 6666653210       001111122333332211      


Q ss_pred             EEEEeCCCcEEEEEeecCCCcccceEe--------eccccCeEEEEeecCCCEEEEE
Q 036510          228 IASASEDGKVIIWTVAREGDQWEGKVL--------HDFKTPVYRVSWSLTGNILAVA  276 (288)
Q Consensus       228 l~s~s~D~~i~iw~~~~~~~~~~~~~~--------~~~~~~i~~~~~spdg~~l~s~  276 (288)
                        +.+.+.++.+|++............        ......+..+.|.++++.++..
T Consensus       223 --~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  277 (470)
T d2bgra1         223 --AVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQW  277 (470)
T ss_dssp             --SCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred             --ccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEE
Confidence              1223446788888754321111110        0111246788999998866653

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.02  E-value=7.9e-10  Score=95.43  Aligned_cols=256  Identities=11%  Similarity=0.009  Sum_probs=126.0

Q ss_pred             cccceEEEEEcCCCCEEEEe-eCCCcEEEEEeCCCCceeeEEEe-ccccCeEEEEecCCCCCCEEEEeeCCCc-------
Q 036510           10 HEDTVHDVAMDYYGKRLATA-SSDYSIKIIGVGNNTSQHLAKLS-GHKGAVWEVAWAHPKFGSILASCSFDGT-------   80 (288)
Q Consensus        10 h~~~v~~~~~s~~g~~l~s~-~~d~~i~lwd~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d~~-------   80 (288)
                      |........++|||++|+.+ ..++.|.++|++.  .+....+. .+......++|+++..-.+++..+.+..       
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t--~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~  147 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDI--MKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGT  147 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTT--TEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSS
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCC--CcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccc
Confidence            44455555567999998555 4678899999853  35555543 4567789999987632225554444322       


Q ss_pred             ----------EEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC-CcEEEEeecCCCCeeeEEe-----
Q 036510           81 ----------VIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD-GNISVFTARADGGWDTSRI-----  144 (288)
Q Consensus        81 ----------v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d-~~i~i~d~~~~~~~~~~~~-----  144 (288)
                                +..+|..+..   ....+.. ......++|+|++  +.+.+.+.+ +.+...+..+.........     
T Consensus       148 ~~~~~~~~~~~~~iD~~t~~---v~~qI~v-~~~p~~v~~spdG--k~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~  221 (441)
T d1qnia2         148 DFSLDNSYTMFTAIDAETMD---VAWQVIV-DGNLDNTDADYTG--KYATSTCYNSERAVDLAGTMRNDRDWVVVFNVER  221 (441)
T ss_dssp             CCCGGGEEEEEEEEETTTCS---EEEEEEE-SSCCCCEEECSSS--SEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHH
T ss_pred             ccccccccceEEeecCccce---eeEEEec-CCCccceEECCCC--CEEEEEecCCCceEEEeccCcceEEEEEeCCccc
Confidence                      1234444322   1122222 2346778899984  444444332 2222222111100000000     


Q ss_pred             ----------eccCCCCeeEEEeCCCCCCCc-------eecccccCCCce-eEEeecCCcEEEEEEeCCce----eeeee
Q 036510          145 ----------DQAHPVGVTSVSWAPSTAPGA-------LVGSGFLDPVQK-LCSGGCDNTVKVWKLYNGIW----KMDCF  202 (288)
Q Consensus       145 ----------~~~~~~~v~~i~~~p~~~~~~-------~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~----~~~~~  202 (288)
                                .......+..+.-........       -.+.....++++ ++++..+++|.+||+.+-..    .++..
T Consensus       222 ~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~  301 (441)
T d1qnia2         222 IAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELR  301 (441)
T ss_dssp             HHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGG
T ss_pred             eEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcc
Confidence                      000000111111100000000       011223333454 56889999999999854110    00101


Q ss_pred             eccccCCc---ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecC-----CCcc--cceEe-----eccccCeEEEEee
Q 036510          203 PALQMHTD---WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVARE-----GDQW--EGKVL-----HDFKTPVYRVSWS  267 (288)
Q Consensus       203 ~~~~~h~~---~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~-----~~~~--~~~~~-----~~~~~~i~~~~~s  267 (288)
                      ..+.++..   ...-.+|.++    +....|..-|..|.-|++...     .+..  ....+     -+|...+.+.+|+
T Consensus       302 ~~~~~~~~~glgplh~~fd~~----g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~  377 (441)
T d1qnia2         302 DTIVAEPELGLGPLHTTFDGR----GNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRD  377 (441)
T ss_dssp             GGEEECCBCCSCEEEEEECSS----SEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTT
T ss_pred             eEEEeecccccCcccceecCC----ceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccC
Confidence            11111111   1233477776    356788888999999998531     1100  00111     1344456678999


Q ss_pred             cCCCEEEEEe
Q 036510          268 LTGNILAVAD  277 (288)
Q Consensus       268 pdg~~l~s~~  277 (288)
                      |||++|++++
T Consensus       378 pdGk~l~s~~  387 (441)
T d1qnia2         378 ADGKWLVVLS  387 (441)
T ss_dssp             CCCCEEEEEE
T ss_pred             CCCcEEEecC
Confidence            9999999994

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.92  E-value=6e-08  Score=83.48  Aligned_cols=242  Identities=9%  Similarity=0.023  Sum_probs=135.1

Q ss_pred             EEEeeCCCcEEEEEeCCCCceeeEEEe------------------------------ccccCeEEEEecCCCCCCEE-EE
Q 036510           26 LATASSDYSIKIIGVGNNTSQHLAKLS------------------------------GHKGAVWEVAWAHPKFGSIL-AS   74 (288)
Q Consensus        26 l~s~~~d~~i~lwd~~~~~~~~~~~~~------------------------------~h~~~v~~~~~~~~~~~~~l-~s   74 (288)
                      ++|++.+|.|++|++..  ++.+.++.                              .|.........++  ||++| ++
T Consensus        14 f~Sgg~sG~V~V~dlpS--~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtp--DGr~lfV~   89 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPS--MRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRY--DGKYLFIN   89 (441)
T ss_dssp             EEECBTTCCEEEEEETT--TEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEE--EEEEEEEE
T ss_pred             EEeCCCCCcEEEEeCCC--CcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccC--CCCEEEEE
Confidence            67888999999999853  33343331                              1333233333333  47766 56


Q ss_pred             eeCCCcEEEeecCCCCceEEeEEee-cCCCceeEEEeccCCCCeEEEEEeCCCc-----------------EEEEeecCC
Q 036510           75 CSFDGTVIIWKEGNSNEWIKDHVFE-DHKSSVNSIDWAPHELGLCLACGSSDGN-----------------ISVFTARAD  136 (288)
Q Consensus        75 ~s~d~~v~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~~l~sg~~d~~-----------------i~i~d~~~~  136 (288)
                      ...+.+|.++|+.+..+   ..++. .+......++|+|++...+++.++.+..                 +..+|..+.
T Consensus        90 d~~~~rVavIDl~t~k~---~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~  166 (441)
T d1qnia2          90 DKANTRVARIRLDIMKT---DKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETM  166 (441)
T ss_dssp             ETTTTEEEEEETTTTEE---EEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTC
T ss_pred             cCCCCEEEEEECCCCcE---eeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccc
Confidence            67899999999987542   22232 2456788999999864445555544321                 122444332


Q ss_pred             CCeeeEEeeccCCCCeeEEEeCCCCCCCceeccc----------------------------ccCCCceeEEeecCCcEE
Q 036510          137 GGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG----------------------------FLDPVQKLCSGGCDNTVK  188 (288)
Q Consensus       137 ~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~----------------------------~~~~~~~l~s~~~d~~i~  188 (288)
                      ..  ..++.-  ......+.|+|++...++...+                            +..+++++.. +.++.+.
T Consensus       167 ~v--~~qI~v--~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v-~~~~v~v  241 (441)
T d1qnia2         167 DV--AWQVIV--DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTI-GDSKVPV  241 (441)
T ss_dssp             SE--EEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCC-TTCCCCE
T ss_pred             ee--eEEEec--CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEe-CCCCcEE
Confidence            11  111111  1235677888887532221110                            0123333333 2345555


Q ss_pred             EEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCc------ccceEeecc--ccC
Q 036510          189 VWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ------WEGKVLHDF--KTP  260 (288)
Q Consensus       189 iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~------~~~~~~~~~--~~~  260 (288)
                      +++....    +.+..+..+..+ ..+.++||++   ..++++..|++|.+||+++..+.      .......+.  .-.
T Consensus       242 vd~~~~~----~v~~~IPvgksP-hGv~vSPDGk---yl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glg  313 (441)
T d1qnia2         242 VDGRGES----EFTRYIPVPKNP-HGLNTSPDGK---YFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLG  313 (441)
T ss_dssp             EECSSSC----SSEEEECCBSSC-CCEEECTTSC---EEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSC
T ss_pred             EEcccCC----ceEEEEeCCCCc-cCceECCCCC---EEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccC
Confidence            5543332    122233333333 5689999962   34677788999999998753210      011111111  112


Q ss_pred             eEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          261 VYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       261 i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                      ..-.+|.++|..+.+...|+.|..|++
T Consensus       314 plh~~fd~~g~~yts~~~ds~v~kw~~  340 (441)
T d1qnia2         314 PLHTTFDGRGNAYTTLFIDSQVCKWNI  340 (441)
T ss_dssp             EEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred             cccceecCCceEEEcccccceEEEecc
Confidence            345699999999999999999999984

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.91  E-value=2.5e-07  Score=77.81  Aligned_cols=244  Identities=11%  Similarity=-0.005  Sum_probs=132.0

Q ss_pred             ccccceEEEEEcCCCCE---EEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEee---------
Q 036510            9 GHEDTVHDVAMDYYGKR---LATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCS---------   76 (288)
Q Consensus         9 ~h~~~v~~~~~s~~g~~---l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---------   76 (288)
                      .+.+....++..++|+.   .+.+..+++.++|-++...++.+..+.++...  .++|+++  |+.|+..+         
T Consensus        17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spD--g~~i~~~~~~~~~~~~g   92 (368)
T d1mdah_          17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHS--GSDFALASTSFARSAKG   92 (368)
T ss_dssp             CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTT--SSCEEEEEEEETTTTSS
T ss_pred             ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCC--CCEEEEEcccCcccccc
Confidence            44555555667788875   23355667766665444556777777777655  5888875  77776543         


Q ss_pred             -CCCcEEEeecCCCCceEEeEEeecCCC-------ceeEEEeccCCCCeEEEEE-eCCCcEEEEeecCCCCeeeEEeecc
Q 036510           77 -FDGTVIIWKEGNSNEWIKDHVFEDHKS-------SVNSIDWAPHELGLCLACG-SSDGNISVFTARADGGWDTSRIDQA  147 (288)
Q Consensus        77 -~d~~v~iwd~~~~~~~~~~~~~~~h~~-------~v~~l~~~p~~~~~~l~sg-~~d~~i~i~d~~~~~~~~~~~~~~~  147 (288)
                       .|++|.+||..+...   ...+..+..       ....+.|+||+  ++++.+ ..++.+.+||+......   .....
T Consensus        93 ~~d~~v~v~D~~t~~~---~~~i~~p~~~~~~~g~~p~~~a~SpDG--k~l~va~~~~~~v~~~d~~~~~~~---~~~~~  164 (368)
T d1mdah_          93 KRTDYVEVFDPVTFLP---IADIELPDAPRFSVGPRVHIIGNCASS--ACLLFFLFGSSAAAGLSVPGASDD---QLTKS  164 (368)
T ss_dssp             SEEEEEEEECTTTCCE---EEEEEETTSCSCCBSCCTTSEEECTTS--SCEEEEECSSSCEEEEEETTTEEE---EEEEC
T ss_pred             ccCCeEEEEECCCCcE---eeeecCCccceecccCCccceEECCCC--CEEEEEeCCCCeEEEEECCCCcEe---EEeec
Confidence             478899999977652   223332221       23468999984  444444 56799999999765321   11111


Q ss_pred             CCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCcee--eeeeeccccCCcceEEEEecCCCCCCC
Q 036510          148 HPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWK--MDCFPALQMHTDWVRDVAWAPNLGLPK  225 (288)
Q Consensus       148 ~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~h~~~V~~v~~sp~~~~~~  225 (288)
                      +....    ..|.+             ...++..+.|+.+..++.......  .........+...+..+.+.++.    
T Consensus       165 ~~~~~----~~~~~-------------~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----  223 (368)
T d1mdah_         165 ASCFH----IHPGA-------------AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPG----  223 (368)
T ss_dssp             SSCCC----CEEEE-------------TTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTT----
T ss_pred             cCcce----EccCC-------------CceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCc----
Confidence            11110    11111             134666777888888876543211  11111223344445556666653    


Q ss_pred             cEEEEEeCCCcEEEEEeecCCCcc----cceE---eec-c-ccCeEEEEeecCCCEEEEEeCC---------CcEEEeEc
Q 036510          226 STIASASEDGKVIIWTVAREGDQW----EGKV---LHD-F-KTPVYRVSWSLTGNILAVADGN---------NNVTLWEE  287 (288)
Q Consensus       226 ~~l~s~s~D~~i~iw~~~~~~~~~----~~~~---~~~-~-~~~i~~~~~spdg~~l~s~~~d---------~~v~~w~~  287 (288)
                      ..+  .+.++.+.+++........    ....   ... . ......++++|++..+.+...+         ..|++||.
T Consensus       224 ~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~  301 (368)
T d1mdah_         224 MLV--WAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTA  301 (368)
T ss_dssp             EEE--ECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEES
T ss_pred             EEE--EecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEEC
Confidence            223  3344556666654321100    0000   000 0 0112347899999887766332         35888874

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.90  E-value=6.7e-06  Score=65.30  Aligned_cols=219  Identities=12%  Similarity=0.106  Sum_probs=117.8

Q ss_pred             cEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCC-c--EEEeecCCCCceEEeEEeecCCCceeEEEe
Q 036510           34 SIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDG-T--VIIWKEGNSNEWIKDHVFEDHKSSVNSIDW  110 (288)
Q Consensus        34 ~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~-~--v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~  110 (288)
                      .|.|.|.++..   ...+..+...+...+|||+  |+.||-.+... .  +.+.+.....    ...+..+........|
T Consensus        20 ~l~i~d~dG~~---~~~l~~~~~~~~sP~wSPD--Gk~IAf~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~   90 (269)
T d2hqsa1          20 ELRVSDYDGYN---QFVVHRSPQPLMSPAWSPD--GSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAF   90 (269)
T ss_dssp             EEEEEETTSCS---CEEEEEESSCEEEEEECTT--SSEEEEEECTTSSCEEEEEETTTCC----EEEEECCSSCEEEEEE
T ss_pred             EEEEEcCCCCC---cEEEecCCCceeeeEECCC--CCEEEEEEeeccCcceeeeecccCc----eeEEeeeeccccccee
Confidence            46666765433   3344455677889999976  88888665433 2  4444443332    2234456778889999


Q ss_pred             ccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEE
Q 036510          111 APHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVW  190 (288)
Q Consensus       111 ~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  190 (288)
                      +|++. .++.....++...++....... .. ..............++++..             ..+++...++...+|
T Consensus        91 spdg~-~i~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~g~~~i~  154 (269)
T d2hqsa1          91 SPDGS-KLAFALSKTGSLNLYVMDLASG-QI-RQVTDGRSNNTEPTWFPDSQ-------------NLAFTSDQAGRPQVY  154 (269)
T ss_dssp             CTTSS-EEEEEECTTSSCEEEEEETTTC-CE-EECCCCSSCEEEEEECTTSS-------------EEEEEECTTSSCEEE
T ss_pred             cCCCC-eeeEeeecCCccceeecccccc-cc-eeeeeccccccccccccccc-------------cceecccccCCceEe
Confidence            99852 3333333444444433322211 11 11112223333445555542             345555556665555


Q ss_pred             EEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeC-CCcEEEEEeecCCCcccceEeeccccCeEEEEeecC
Q 036510          191 KLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE-DGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLT  269 (288)
Q Consensus       191 d~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~-D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spd  269 (288)
                      ........   ...+..+........|+|++    ..++..+. .+...+|........   ..............||||
T Consensus       155 ~~~~~~~~---~~~~~~~~~~~~~~~~spdg----~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~p~~SPD  224 (269)
T d2hqsa1         155 KVNINGGA---PQRITWEGSQNQDADVSSDG----KFMVMVSSNGGQQHIAKQDLATGG---VQVLSSTFLDETPSLAPN  224 (269)
T ss_dssp             EEETTSSC---CEECCCSSSEEEEEEECTTS----SEEEEEEECSSCEEEEEEETTTCC---EEECCCSSSCEEEEECTT
T ss_pred             eeeccccc---ceeeeccccccccccccccc----ceeEEEeecCCceeeeEeeccccc---ceEeecCccccceEECCC
Confidence            55432211   11223345556778999985    45555554 556666665543221   222223345677899999


Q ss_pred             CCEEEEEeCC---CcEEEeEc
Q 036510          270 GNILAVADGN---NNVTLWEE  287 (288)
Q Consensus       270 g~~l~s~~~d---~~v~~w~~  287 (288)
                      |+.|+..+..   ..+.++++
T Consensus       225 G~~i~f~s~~~~~~~l~~~~~  245 (269)
T d2hqsa1         225 GTMVIYSSSQGMGSVLNLVST  245 (269)
T ss_dssp             SSEEEEEEEETTEEEEEEEET
T ss_pred             CCEEEEEEcCCCCcEEEEEEC
Confidence            9998866543   35666663

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.89  E-value=2.9e-06  Score=68.57  Aligned_cols=238  Identities=13%  Similarity=0.085  Sum_probs=137.2

Q ss_pred             ceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEec------cccCeEEEEecCCCCCCEEE-EeeCCCcEEEee
Q 036510           13 TVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSG------HKGAVWEVAWAHPKFGSILA-SCSFDGTVIIWK   85 (288)
Q Consensus        13 ~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~------h~~~v~~~~~~~~~~~~~l~-s~s~d~~v~iwd   85 (288)
                      .-..|+++++|+++++-.....|++||.++   ..+..+..      ....-..+.+... .+..++ ..+.++.|..++
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G---~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~i~~~~   99 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG---RFKFQFGECGKRDSQLLYPNRVAVVRN-SGDIIVTERSPTHQIQIYN   99 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTS---CEEEEECCBSSSTTCBSSEEEEEEETT-TTEEEEEECGGGCEEEEEC
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCC---CEEEEecccCCCccccccccccccccc-ccccceeccCCcccccccc
Confidence            357899999999888877778899998643   33433321      1112345555433 244444 445566777776


Q ss_pred             cCCCCceEEeEEee-cCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510           86 EGNSNEWIKDHVFE-DHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPG  164 (288)
Q Consensus        86 ~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~  164 (288)
                      .. +.   ....+. ........+++.++  +.++++....+.+.+++..  +......-...+......+.+.+++   
T Consensus       100 ~~-g~---~~~~~~~~~~~~p~~~avd~~--G~i~v~~~~~~~~~~~~~~--g~~~~~~g~~~~~~~~~~i~~d~~g---  168 (279)
T d1q7fa_         100 QY-GQ---FVRKFGATILQHPRGVTVDNK--GRIIVVECKVMRVIIFDQN--GNVLHKFGCSKHLEFPNGVVVNDKQ---  168 (279)
T ss_dssp             TT-SC---EEEEECTTTCSCEEEEEECTT--SCEEEEETTTTEEEEECTT--SCEEEEEECTTTCSSEEEEEECSSS---
T ss_pred             cc-cc---ceeecCCCcccccceeccccC--CcEEEEeeccceeeEeccC--Cceeecccccccccccceeeeccce---
Confidence            43 33   222232 23345677887776  5556655555666666532  2221111122344455666666654   


Q ss_pred             ceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeC-CCcEEEEEee
Q 036510          165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE-DGKVIIWTVA  243 (288)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~-D~~i~iw~~~  243 (288)
                                 +++++....+.|+++|.... .. ..+. ..+....-..|++.|++    +.+++-+. +..|.+|+..
T Consensus       169 -----------~i~v~d~~~~~V~~~d~~G~-~~-~~~g-~~g~~~~P~giavD~~G----~i~Vad~~~~~~v~~f~~~  230 (279)
T d1q7fa_         169 -----------EIFISDNRAHCVKVFNYEGQ-YL-RQIG-GEGITNYPIGVGINSNG----EILIADNHNNFNLTIFTQD  230 (279)
T ss_dssp             -----------EEEEEEGGGTEEEEEETTCC-EE-EEES-CTTTSCSEEEEEECTTC----CEEEEECSSSCEEEEECTT
T ss_pred             -----------eEEeeeccccceeeeecCCc-ee-eeec-ccccccCCcccccccCC----eEEEEECCCCcEEEEECCC
Confidence                       66777777888999986432 11 1111 13344456788998874    56666544 4568888743


Q ss_pred             cCCCcccceEeecc-ccCeEEEEeecCCCEEEEEeCCCcEEEeEc
Q 036510          244 REGDQWEGKVLHDF-KTPVYRVSWSLTGNILAVADGNNNVTLWEE  287 (288)
Q Consensus       244 ~~~~~~~~~~~~~~-~~~i~~~~~spdg~~l~s~~~d~~v~~w~~  287 (288)
                        . .......... ......+++.|||++ ++++.++.|++|+.
T Consensus       231 --G-~~~~~~~~~~~~~~p~~vav~~dG~l-~V~~~n~~v~~fr~  271 (279)
T d1q7fa_         231 --G-QLISALESKVKHAQCFDVALMDDGSV-VLASKDYRLYIYRY  271 (279)
T ss_dssp             --S-CEEEEEEESSCCSCEEEEEEETTTEE-EEEETTTEEEEEEC
T ss_pred             --C-CEEEEEeCCCCCCCEeEEEEeCCCcE-EEEeCCCeEEEEEe
Confidence              1 1111111111 134788999999975 55678999999984

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.85  E-value=2.9e-06  Score=69.37  Aligned_cols=201  Identities=13%  Similarity=0.104  Sum_probs=124.4

Q ss_pred             CeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCC
Q 036510           57 AVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARAD  136 (288)
Q Consensus        57 ~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~  136 (288)
                      .+.++++.++  |+++++...+++|..|+.. +. .   ..+......+.+++|.|+  +.++++...++.+..++....
T Consensus        29 ~~e~iAv~pd--G~l~vt~~~~~~I~~i~p~-g~-~---~~~~~~~~~~~gla~~~d--G~l~v~~~~~~~~~~~~~~~~   99 (302)
T d2p4oa1          29 FLENLASAPD--GTIFVTNHEVGEIVSITPD-GN-Q---QIHATVEGKVSGLAFTSN--GDLVATGWNADSIPVVSLVKS   99 (302)
T ss_dssp             CEEEEEECTT--SCEEEEETTTTEEEEECTT-CC-E---EEEEECSSEEEEEEECTT--SCEEEEEECTTSCEEEEEECT
T ss_pred             CcCCEEECCC--CCEEEEeCCCCEEEEEeCC-CC-E---EEEEcCCCCcceEEEcCC--CCeEEEecCCceEEEEEeccc
Confidence            3678898864  8999999999998888754 22 1   223345568999999998  567777777788888876543


Q ss_pred             CCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeee------ccccCCc
Q 036510          137 GGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFP------ALQMHTD  210 (288)
Q Consensus       137 ~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~------~~~~h~~  210 (288)
                      ..................+.+.+++              +++++-+.++.+..+|...+........      .......
T Consensus       100 ~~~~~~~~~~~~~~~~n~i~~~~~g--------------~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (302)
T d2p4oa1         100 DGTVETLLTLPDAIFLNGITPLSDT--------------QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFP  165 (302)
T ss_dssp             TSCEEEEEECTTCSCEEEEEESSSS--------------EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSC
T ss_pred             ccceeeccccCCccccceeEEccCC--------------CEEeeccccccceeeeccCCcceeEecCCccceeeccCccc
Confidence            3222222222233446677777765              5667766677776666554422111110      1112222


Q ss_pred             ceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          211 WVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       211 ~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      ..+.+.+..+     .+.++.+..+.|..++..............+ ......++|.+||+++++...+++|..++
T Consensus       166 ~~ngi~~~~~-----~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~pdgia~d~dG~l~va~~~~~~V~~i~  235 (302)
T d2p4oa1         166 AANGLKRFGN-----FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIA  235 (302)
T ss_dssp             SEEEEEEETT-----EEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEEC
T ss_pred             ccccccccCC-----ceeeecCCCCeEEeccccccccccccccccC-CCCCcceEECCCCCEEEEEcCCCcEEEEC
Confidence            4566666543     4677777888888888764322212222222 22345799999999888877888888775

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.77  E-value=9.7e-06  Score=64.35  Aligned_cols=227  Identities=12%  Similarity=0.039  Sum_probs=119.9

Q ss_pred             cccceEEEEEcCCCCEEEEeeC-CCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeC-CCcEEEeecC
Q 036510           10 HEDTVHDVAMDYYGKRLATASS-DYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSF-DGTVIIWKEG   87 (288)
Q Consensus        10 h~~~v~~~~~s~~g~~l~s~~~-d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-d~~v~iwd~~   87 (288)
                      +...+..-+|||||++||=... .+...+|...... .....+..+........|+++  |..++..+. ++...++...
T Consensus        37 ~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~spd--g~~i~~~~~~~~~~~~~~~~  113 (269)
T d2hqsa1          37 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GAVRQVASFPRHNGAPAFSPD--GSKLAFALSKTGSLNLYVMD  113 (269)
T ss_dssp             ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-CCEEEEECCSSCEEEEEECTT--SSEEEEEECTTSSCEEEEEE
T ss_pred             CCCceeeeEECCCCCEEEEEEeeccCcceeeeeccc-CceeEEeeeecccccceecCC--CCeeeEeeecCCccceeecc
Confidence            4556677889999999875443 3333344332222 223455667788888999875  677765443 3333333222


Q ss_pred             CCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCcee
Q 036510           88 NSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV  167 (288)
Q Consensus        88 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~  167 (288)
                      ..... . ..............+++++ ...+.+...++...+|........  ...............|+|++.     
T Consensus       114 ~~~~~-~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~-----  183 (269)
T d2hqsa1         114 LASGQ-I-RQVTDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGK-----  183 (269)
T ss_dssp             TTTCC-E-EECCCCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSC--CEECCCSSSEEEEEEECTTSS-----
T ss_pred             ccccc-c-eeeeecccccccccccccc-ccceecccccCCceEeeeeccccc--ceeeecccccccccccccccc-----
Confidence            21111 1 1122233334445566654 344555555665555544332211  112223344566778999873     


Q ss_pred             cccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeC---CCcEEEEEeec
Q 036510          168 GSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE---DGKVIIWTVAR  244 (288)
Q Consensus       168 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~---D~~i~iw~~~~  244 (288)
                              .++......+...+|.+.......+    +..+........||||+    +.||-.+.   ...|.++++..
T Consensus       184 --------~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~p~~SPDG----~~i~f~s~~~~~~~l~~~~~dg  247 (269)
T d2hqsa1         184 --------FMVMVSSNGGQQHIAKQDLATGGVQ----VLSSTFLDETPSLAPNG----TMVIYSSSQGMGSVLNLVSTDG  247 (269)
T ss_dssp             --------EEEEEEECSSCEEEEEEETTTCCEE----ECCCSSSCEEEEECTTS----SEEEEEEEETTEEEEEEEETTS
T ss_pred             --------eeEEEeecCCceeeeEeecccccce----EeecCccccceEECCCC----CEEEEEEcCCCCcEEEEEECCC
Confidence                    3344555555666666654321111    12234446778999985    56765543   33577777653


Q ss_pred             CCCcccceEeeccccCeEEEEeecC
Q 036510          245 EGDQWEGKVLHDFKTPVYRVSWSLT  269 (288)
Q Consensus       245 ~~~~~~~~~~~~~~~~i~~~~~spd  269 (288)
                      ..    ...+......+...+|||-
T Consensus       248 ~~----~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         248 RF----KARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             CC----EEECCCSSSEEEEEEECCC
T ss_pred             CC----EEEEeCCCCcEEeEEeCCC
Confidence            21    2233333456778899983

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.69  E-value=1e-05  Score=64.50  Aligned_cols=234  Identities=12%  Similarity=0.045  Sum_probs=130.1

Q ss_pred             eEEEEEcCCCCEEEEe-eCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCce
Q 036510           14 VHDVAMDYYGKRLATA-SSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEW   92 (288)
Q Consensus        14 v~~~~~s~~g~~l~s~-~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~   92 (288)
                      -.+|+++++|+++++. +..+.+..++... .........+.. ....++++++  +.++++....+.+++++..+..  
T Consensus        16 P~~vavd~dG~i~v~~~~~~~~i~~~~~~~-~~~~~~~~~~~~-~p~gvav~~~--g~i~v~d~~~~~i~~~~~~~~~--   89 (260)
T d1rwia_          16 PSGVAVDSAGNVYVTSEGMYGRVVKLATGS-TGTTVLPFNGLY-QPQGLAVDGA--GTVYVTDFNNRVVTLAAGSNNQ--   89 (260)
T ss_dssp             EEEEEECTTCCEEEEECSSSCEEEEEC-----CEEECCCCSCC-SCCCEEECTT--CCEEEEETTTEEEEECTTCSCC--
T ss_pred             CCEEEEcCCCCEEEEEcCCCCEEEEEcCCC-ceEEEeccCCcc-CceEEEEcCC--CCEEEeeeeeceeeeeeeccce--
Confidence            3789999999976654 4456666555432 222222223322 2367788753  7888888887777776543322  


Q ss_pred             EEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceeccccc
Q 036510           93 IKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFL  172 (288)
Q Consensus        93 ~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~  172 (288)
                       ...... ......++++.++  +.++++-.....+..++......  ......+ -.....|.++|++           
T Consensus        90 -~~~~~~-~~~~p~~iavd~~--g~i~v~d~~~~~~~~~~~~~~~~--~~~~~~~-~~~p~~i~~~~~g-----------  151 (260)
T d1rwia_          90 -TVLPFD-GLNYPEGLAVDTQ--GAVYVADRGNNRVVKLAAGSKTQ--TVLPFTG-LNDPDGVAVDNSG-----------  151 (260)
T ss_dssp             -EECCCC-SCCSEEEEEECTT--CCEEEEEGGGTEEEEECTTCSSC--EECCCCS-CCSCCEEEECTTC-----------
T ss_pred             -eeeeee-eeeeccccccccc--ceeEeecccccccccccccccee--eeeeecc-cCCcceeeecCCC-----------
Confidence             111121 2245678888886  45555554455565555432211  1111111 1223566776665           


Q ss_pred             CCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccce
Q 036510          173 DPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGK  252 (288)
Q Consensus       173 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~  252 (288)
                         +++++...++.|..+|.....   ... .....-..-..+++.+++    .++++-...+.|..++.....    ..
T Consensus       152 ---~~~v~~~~~~~i~~~d~~~~~---~~~-~~~~~~~~p~gi~~d~~g----~l~vsd~~~~~i~~~~~~~~~----~~  216 (260)
T d1rwia_         152 ---NVYVTDTDNNRVVKLEAESNN---QVV-LPFTDITAPWGIAVDEAG----TVYVTEHNTNQVVKLLAGSTT----ST  216 (260)
T ss_dssp             ---CEEEEEGGGTEEEEECTTTCC---EEE-CCCSSCCSEEEEEECTTC----CEEEEETTTTEEEEECTTCSC----CE
T ss_pred             ---CEeeeccccccccccccccce---eee-eeccccCCCccceeeeee----eeeeeecCCCEEEEEeCCCCe----EE
Confidence               566666667778888765432   111 111222335788888863    577777777788777654221    12


Q ss_pred             Eeec-cccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          253 VLHD-FKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       253 ~~~~-~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      .... .-.....++++++|+++++-..++.|+..+
T Consensus       217 ~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         217 VLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             ECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             EEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence            2111 113567999999999877766677776554

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.36  E-value=0.00039  Score=56.66  Aligned_cols=251  Identities=10%  Similarity=0.036  Sum_probs=125.1

Q ss_pred             ceEEEEEcCCCCEEEEeeC-------CCcEEEEEeCCCCceeeEEE--eccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510           13 TVHDVAMDYYGKRLATASS-------DYSIKIIGVGNNTSQHLAKL--SGHKGAVWEVAWAHPKFGSILASCSFDGTVII   83 (288)
Q Consensus        13 ~v~~~~~s~~g~~l~s~~~-------d~~i~lwd~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i   83 (288)
                      ...+.+|.++|+++++...       +++|..||............  ..-...-..++|.++  ++.++.+...+.+..
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~d--g~~l~vad~~~~i~~   96 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRD--ANQLFVADMRLGLLV   96 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSS--SSEEEEEETTTEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCC--CCEEEEEECCCeEEE
Confidence            4567789999998776433       34565566543221111110  111123467888754  677777777677777


Q ss_pred             eecCCCCceEEeEEeecCC-CceeEEEeccCCCCeEEEEEeC-------------CCcEEEEeecCCCCeeeEEeeccCC
Q 036510           84 WKEGNSNEWIKDHVFEDHK-SSVNSIDWAPHELGLCLACGSS-------------DGNISVFTARADGGWDTSRIDQAHP  149 (288)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~-~~v~~l~~~p~~~~~~l~sg~~-------------d~~i~i~d~~~~~~~~~~~~~~~~~  149 (288)
                      .+..............+.. ...+.+.+.|+  +.+.++-..             ...-++|-+..++......  .. -
T Consensus        97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~--G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~--~~-~  171 (314)
T d1pjxa_          97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYE--GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVD--TA-F  171 (314)
T ss_dssp             EETTSCEEECCSBCTTSCBCBCCCEEEECTT--SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEE--EE-E
T ss_pred             EeCCCcEEEEEeccccccccCCCcEEEECCC--CCEEEecCccCcccccccceeccCCceEEEEeecCceeEee--CC-c
Confidence            7764321100000000110 12466777776  444443211             0111333333222221111  00 0


Q ss_pred             CCeeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCcee--eeeeecccc-CCcceEEEEecCCCCCCCc
Q 036510          150 VGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWK--MDCFPALQM-HTDWVRDVAWAPNLGLPKS  226 (288)
Q Consensus       150 ~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~-h~~~V~~v~~sp~~~~~~~  226 (288)
                      ..-.-+.|+|+.....         ..+.++-+..+.|..+|+......  .+....+.+ +...-..+++.++    ++
T Consensus       172 ~~pNGi~~~~d~d~~~---------~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~----Gn  238 (314)
T d1pjxa_         172 QFPNGIAVRHMNDGRP---------YQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED----NN  238 (314)
T ss_dssp             SSEEEEEEEECTTSCE---------EEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT----CC
T ss_pred             ceeeeeEECCCCCcce---------eEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecC----Cc
Confidence            1123455655431000         024555567788888887543111  111122222 1222356777776    36


Q ss_pred             EEEEEeCCCcEEEEEeecCCCcccceEeeccccCeEEEEeecCCCEE-EEEeCCCcEEEeE
Q 036510          227 TIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNIL-AVADGNNNVTLWE  286 (288)
Q Consensus       227 ~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l-~s~~~d~~v~~w~  286 (288)
                      +.++....+.|.+||.+...   ....+........+++|.||++.| ++.+.++.|.-.+
T Consensus       239 lyVa~~~~g~I~~~dp~~g~---~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~  296 (314)
T d1pjxa_         239 LLVANWGSSHIEVFGPDGGQ---PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE  296 (314)
T ss_dssp             EEEEEETTTEEEEECTTCBS---CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEEEEcCCCEEEEEeCCCCE---EEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            67777778889999875321   123333334568899999999855 4445567776655

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.36  E-value=0.00046  Score=57.42  Aligned_cols=167  Identities=10%  Similarity=0.028  Sum_probs=93.2

Q ss_pred             eEEEEecCCCCCCEEEEeeC-CCcEEEeecCCCCceEEeEEe--ecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeec
Q 036510           58 VWEVAWAHPKFGSILASCSF-DGTVIIWKEGNSNEWIKDHVF--EDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTAR  134 (288)
Q Consensus        58 v~~~~~~~~~~~~~l~s~s~-d~~v~iwd~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~  134 (288)
                      +.++.|+++  |++++.+.. ...|.+|+.............  .........+.|+|++ ..+.+++..+++|.+|+..
T Consensus       147 ~h~v~~sPd--G~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg-~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         147 IHGMVFDPT--ETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             EEEEEECTT--SSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEEC
T ss_pred             ceEEEECCC--CCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCC-ceEEEeccCCCEEEEEEec
Confidence            678999865  787766653 457888876443322222222  1234567889999985 3456777889999999986


Q ss_pred             CCCCeeeEEeec----------------cCCCCeeEEEeCCCCCCCceecccccCCCceeEEe-ecCCc-----EEEEEE
Q 036510          135 ADGGWDTSRIDQ----------------AHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSG-GCDNT-----VKVWKL  192 (288)
Q Consensus       135 ~~~~~~~~~~~~----------------~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~-~~d~~-----i~iwd~  192 (288)
                      ............                .+......+.++|++              ++|+++ -.++.     |..|++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG--------------~~lyvsnr~~~~~~~~~i~~~~~  289 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG--------------KYMFASSRANKFELQGYIAGFKL  289 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS--------------SEEEEEEEESSTTSCCEEEEEEE
T ss_pred             CCCceEEEEeeeeccccccccccccccccccCCccceEECCCC--------------CEEEEEcccCCCccceEEEEEEe
Confidence            543221111100                011124467778876              455443 22332     666776


Q ss_pred             eCCce--eeeeeeccccCCcceEEEEecCCCCCCCcEEE-EEeCCCcEEEEEeec
Q 036510          193 YNGIW--KMDCFPALQMHTDWVRDVAWAPNLGLPKSTIA-SASEDGKVIIWTVAR  244 (288)
Q Consensus       193 ~~~~~--~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~-s~s~D~~i~iw~~~~  244 (288)
                      .....  ....+.........-+.+.++|..   +++|+ +...+++|.+|+++.
T Consensus       290 ~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~---G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         290 RDCGSIEKQLFLSPTPTSGGHSNAVSPCPWS---DEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             CTTSCEEEEEEEEECSSCCTTCCCEEECTTC---TTEEEEECSSSCEEEEEEEET
T ss_pred             cCCCceeeEeEeeEEEcCCCCccEEEecCCC---CCEEEEEeCCCCeEEEEEEeC
Confidence            54211  111111111122234778999832   35554 445688999999864

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.31  E-value=9.7e-05  Score=60.43  Aligned_cols=206  Identities=11%  Similarity=0.127  Sum_probs=113.7

Q ss_pred             eEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEE-Eeccc-cCeEEEEecCCCCCCEEEEeeC-------------C
Q 036510           14 VHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAK-LSGHK-GAVWEVAWAHPKFGSILASCSF-------------D   78 (288)
Q Consensus        14 v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~-~~~h~-~~v~~~~~~~~~~~~~l~s~s~-------------d   78 (288)
                      -..+.|.++|+.|+.+.....+...+.+......+.. ..+.. ...+.+++.++  |.+.++-+.             .
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~--G~lyvtd~~~~~~~~~~~~~~~~  150 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYE--GNLWITAPAGEVAPADYTRSMQE  150 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTT--SCEEEEECBCBCTTSCCCBTTSS
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCC--CCEEEecCccCcccccccceecc
Confidence            3568899999888878777777777764321111100 01111 12467888653  777776432             1


Q ss_pred             CcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCC---eEEEEEeCCCcEEEEeecCCCCeeeEEeec---c-CCCC
Q 036510           79 GTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELG---LCLACGSSDGNISVFTARADGGWDTSRIDQ---A-HPVG  151 (288)
Q Consensus        79 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~---~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~---~-~~~~  151 (288)
                      ..-++|.+........  .. .....-+.++|+|++.+   .++++-+..+.|..|++...+.........   . ....
T Consensus       151 ~~G~v~~~~~dg~~~~--~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~  227 (314)
T d1pjxa_         151 KFGSIYCFTTDGQMIQ--VD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGG  227 (314)
T ss_dssp             SCEEEEEECTTSCEEE--EE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCE
T ss_pred             CCceEEEEeecCceeE--ee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccccc
Confidence            1223443332222211  11 12234578899887533   345555777888888876543322111111   1 1111


Q ss_pred             eeEEEeCCCCCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEE
Q 036510          152 VTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASA  231 (288)
Q Consensus       152 v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~  231 (288)
                      ...+.+.+++              ++.++....+.|.+||...+.    ....+........+++|.|+.   ..++++.
T Consensus       228 pdGiavD~~G--------------nlyVa~~~~g~I~~~dp~~g~----~~~~i~~p~~~~t~~afg~d~---~~lyVt~  286 (314)
T d1pjxa_         228 ADGMDFDEDN--------------NLLVANWGSSHIEVFGPDGGQ----PKMRIRCPFEKPSNLHFKPQT---KTIFVTE  286 (314)
T ss_dssp             EEEEEEBTTC--------------CEEEEEETTTEEEEECTTCBS----CSEEEECSSSCEEEEEECTTS---SEEEEEE
T ss_pred             ceeeEEecCC--------------cEEEEEcCCCEEEEEeCCCCE----EEEEEECCCCCEEEEEEeCCC---CEEEEEE
Confidence            2334454443              666666667889999865542    122233344567899999975   3577888


Q ss_pred             eCCCcEEEEEeecC
Q 036510          232 SEDGKVIIWTVARE  245 (288)
Q Consensus       232 s~D~~i~iw~~~~~  245 (288)
                      +..+.|.-.++...
T Consensus       287 ~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         287 HENNAVWKFEWQRN  300 (314)
T ss_dssp             TTTTEEEEEECSSC
T ss_pred             CCCCcEEEEECCCC
Confidence            88888877776543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.79  E-value=0.0017  Score=50.93  Aligned_cols=193  Identities=10%  Similarity=0.060  Sum_probs=110.0

Q ss_pred             eEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceE
Q 036510           14 VHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWI   93 (288)
Q Consensus        14 v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~   93 (288)
                      ..+++++++|+++++....+.+++++-  +....+....+ ....+++++.++  ++++++-..+..+..++......  
T Consensus        59 p~gvav~~~g~i~v~d~~~~~i~~~~~--~~~~~~~~~~~-~~~p~~iavd~~--g~i~v~d~~~~~~~~~~~~~~~~--  131 (260)
T d1rwia_          59 PQGLAVDGAGTVYVTDFNNRVVTLAAG--SNNQTVLPFDG-LNYPEGLAVDTQ--GAVYVADRGNNRVVKLAAGSKTQ--  131 (260)
T ss_dssp             CCCEEECTTCCEEEEETTTEEEEECTT--CSCCEECCCCS-CCSEEEEEECTT--CCEEEEEGGGTEEEEECTTCSSC--
T ss_pred             ceEEEEcCCCCEEEeeeeeceeeeeee--ccceeeeeeee-eeeccccccccc--ceeEeecccccccccccccccee--
Confidence            357889999998887777666665543  22223322222 245688998653  77887766777777776543321  


Q ss_pred             EeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccC
Q 036510           94 KDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLD  173 (288)
Q Consensus        94 ~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~  173 (288)
                      ......+ ......+++.|+  +.++++....+.|..++......   .......-.....|.+++++            
T Consensus       132 ~~~~~~~-~~~p~~i~~~~~--g~~~v~~~~~~~i~~~d~~~~~~---~~~~~~~~~~p~gi~~d~~g------------  193 (260)
T d1rwia_         132 TVLPFTG-LNDPDGVAVDNS--GNVYVTDTDNNRVVKLEAESNNQ---VVLPFTDITAPWGIAVDEAG------------  193 (260)
T ss_dssp             EECCCCS-CCSCCEEEECTT--CCEEEEEGGGTEEEEECTTTCCE---EECCCSSCCSEEEEEECTTC------------
T ss_pred             eeeeecc-cCCcceeeecCC--CCEeeecccccccccccccccee---eeeeccccCCCccceeeeee------------
Confidence            1111111 234578888886  55667777777888887653321   11111222345667777765            


Q ss_pred             CCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEE
Q 036510          174 PVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWT  241 (288)
Q Consensus       174 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~  241 (288)
                        +++++....+.|..++......  ... . ...-..-..+++.+++    .++++-..++.|+..+
T Consensus       194 --~l~vsd~~~~~i~~~~~~~~~~--~~~-~-~~~~~~P~~i~~d~~g----~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         194 --TVYVTEHNTNQVVKLLAGSTTS--TVL-P-FTGLNTPLAVAVDSDR----TVYVADRGNDRVVKLT  251 (260)
T ss_dssp             --CEEEEETTTTEEEEECTTCSCC--EEC-C-CCSCCCEEEEEECTTC----CEEEEEGGGTEEEEEC
T ss_pred             --eeeeeecCCCEEEEEeCCCCeE--EEE-c-cCCCCCeEEEEEeCCC----CEEEEECCCCEEEEEe
Confidence              5666666677777665433211  111 1 1122234788888863    5666656666665544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.64  E-value=0.0098  Score=48.03  Aligned_cols=203  Identities=10%  Similarity=0.143  Sum_probs=108.3

Q ss_pred             CeEEEEecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeC--CCcEEEEeec
Q 036510           57 AVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSS--DGNISVFTAR  134 (288)
Q Consensus        57 ~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~--d~~i~i~d~~  134 (288)
                      .+-.++|.+  +|+++++-...+.|.-|+......   ...+.........++++|+  +.++++...  .....++.+.
T Consensus        41 ~lEG~~~D~--~G~Ly~~D~~~g~I~ri~p~g~~~---~~~~~~~~~~p~gla~~~d--G~l~va~~~~~~~~~~i~~~~  113 (319)
T d2dg1a1          41 QLEGLNFDR--QGQLFLLDVFEGNIFKINPETKEI---KRPFVSHKANPAAIKIHKD--GRLFVCYLGDFKSTGGIFAAT  113 (319)
T ss_dssp             CEEEEEECT--TSCEEEEETTTCEEEEECTTTCCE---EEEEECSSSSEEEEEECTT--SCEEEEECTTSSSCCEEEEEC
T ss_pred             CcEeCEECC--CCCEEEEECCCCEEEEEECCCCeE---EEEEeCCCCCeeEEEECCC--CCEEEEecCCCccceeEEEEc
Confidence            345788865  478888877889998888754431   1223334456789999987  555555432  2233444433


Q ss_pred             CCCCeeeEEeec-cCCCCeeEEEeCCCCCCCceecccccCCCceeEEeec----CCcEEEEEEeCCceeeeeeeccccCC
Q 036510          135 ADGGWDTSRIDQ-AHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC----DNTVKVWKLYNGIWKMDCFPALQMHT  209 (288)
Q Consensus       135 ~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~~h~  209 (288)
                      ............ .-......+.+.|++              ++.++...    +..-.+|-+.......+   .+...-
T Consensus       114 ~~~~~~~~~~~~~~~~~~~nd~~~d~~G--------------~l~vtd~~~~~~~~~g~v~~~~~dg~~~~---~~~~~~  176 (319)
T d2dg1a1         114 ENGDNLQDIIEDLSTAYCIDDMVFDSKG--------------GFYFTDFRGYSTNPLGGVYYVSPDFRTVT---PIIQNI  176 (319)
T ss_dssp             TTSCSCEEEECSSSSCCCEEEEEECTTS--------------CEEEEECCCBTTBCCEEEEEECTTSCCEE---EEEEEE
T ss_pred             CCCceeeeeccCCCcccCCcceeEEecc--------------ceeecccccccccCcceeEEEecccceeE---EEeecc
Confidence            221111111111 112335567777776              33333211    11122333322110111   111111


Q ss_pred             cceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCccc---ceEeeccc--cCeEEEEeecCCCEEEEEeCCCcEEE
Q 036510          210 DWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWE---GKVLHDFK--TPVYRVSWSLTGNILAVADGNNNVTL  284 (288)
Q Consensus       210 ~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~---~~~~~~~~--~~i~~~~~spdg~~l~s~~~d~~v~~  284 (288)
                      ..-+.+.|+|+.   ..+.++-+..+.|..|++........   ........  ...-.+++.++|++.++...++.|.+
T Consensus       177 ~~pnGia~s~dg---~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~  253 (319)
T d2dg1a1         177 SVANGIALSTDE---KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLV  253 (319)
T ss_dssp             SSEEEEEECTTS---SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred             ceeeeeeecccc---ceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEE
Confidence            224779999985   23567777888999999864321110   01111111  12457999999998888888899998


Q ss_pred             eE
Q 036510          285 WE  286 (288)
Q Consensus       285 w~  286 (288)
                      ++
T Consensus       254 ~~  255 (319)
T d2dg1a1         254 FN  255 (319)
T ss_dssp             EC
T ss_pred             EC
Confidence            87

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=0.0028  Score=54.35  Aligned_cols=74  Identities=7%  Similarity=-0.027  Sum_probs=47.5

Q ss_pred             ceEEEEEcCCCCEEEEee---------CCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCCCcEEE
Q 036510           13 TVHDVAMDYYGKRLATAS---------SDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVII   83 (288)
Q Consensus        13 ~v~~~~~s~~g~~l~s~~---------~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~i   83 (288)
                      .+....|||||++|+-..         ..+.+.++|+..+....+.........+....|||+  |+.+|-.. ++.+.+
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPD--G~~iafv~-~~nl~~  138 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPK--GQQLIFIF-ENNIYY  138 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSS--TTCEEEEE-TTEEEE
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccC--CceEEEEe-cceEEE
Confidence            556678999999877653         356788889865544333322233444556788875  88888766 456666


Q ss_pred             eecCCC
Q 036510           84 WKEGNS   89 (288)
Q Consensus        84 wd~~~~   89 (288)
                      .+...+
T Consensus       139 ~~~~~~  144 (465)
T d1xfda1         139 CAHVGK  144 (465)
T ss_dssp             ESSSSS
T ss_pred             EecCCC
Confidence            665443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.63  E-value=0.01  Score=47.87  Aligned_cols=233  Identities=9%  Similarity=0.031  Sum_probs=122.9

Q ss_pred             eEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEeeCC--CcEEEeecCCCCc
Q 036510           14 VHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFD--GTVIIWKEGNSNE   91 (288)
Q Consensus        14 v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d--~~v~iwd~~~~~~   91 (288)
                      +.++.|+++|+++++-...+.|.-++.+..  .....+.........+++.++  |.++++...+  ....++.......
T Consensus        42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~--~~~~~~~~~~~~p~gla~~~d--G~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          42 LEGLNFDRQGQLFLLDVFEGNIFKINPETK--EIKRPFVSHKANPAAIKIHKD--GRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTC--CEEEEEECSSSSEEEEEECTT--SCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             cEeCEECCCCCEEEEECCCCEEEEEECCCC--eEEEEEeCCCCCeeEEEECCC--CCEEEEecCCCccceeEEEEcCCCc
Confidence            457889999998887777787766665432  223334445556789999754  7777765433  2333443322211


Q ss_pred             eEEeEEee--cCCCceeEEEeccCCCCeEEEEEeCC----CcEEEEeecCCC-CeeeEEeeccCCCCeeEEEeCCCCCCC
Q 036510           92 WIKDHVFE--DHKSSVNSIDWAPHELGLCLACGSSD----GNISVFTARADG-GWDTSRIDQAHPVGVTSVSWAPSTAPG  164 (288)
Q Consensus        92 ~~~~~~~~--~h~~~v~~l~~~p~~~~~~l~sg~~d----~~i~i~d~~~~~-~~~~~~~~~~~~~~v~~i~~~p~~~~~  164 (288)
                      ... ....  .-....+.+.+.|+  +.+.++-...    ..-.+|-+..+. .....  ... -....-|.|+|++.  
T Consensus       118 ~~~-~~~~~~~~~~~~nd~~~d~~--G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~--~~~-~~~pnGia~s~dg~--  189 (319)
T d2dg1a1         118 NLQ-DIIEDLSTAYCIDDMVFDSK--GGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI--IQN-ISVANGIALSTDEK--  189 (319)
T ss_dssp             SCE-EEECSSSSCCCEEEEEECTT--SCEEEEECCCBTTBCCEEEEEECTTSCCEEEE--EEE-ESSEEEEEECTTSS--
T ss_pred             eee-eeccCCCcccCCcceeEEec--cceeecccccccccCcceeEEEecccceeEEE--eec-cceeeeeeeccccc--
Confidence            111 1111  11234567777776  4444432111    112233332222 11111  111 11235688888762  


Q ss_pred             ceecccccCCCceeEEeecCCcEEEEEEeCCceee-----eeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEE
Q 036510          165 ALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKM-----DCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVII  239 (288)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-----~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~i  239 (288)
                                 .+.++-+..+.|..||+.......     .......+.. .-..+++.++    +++.++....+.|.+
T Consensus       190 -----------~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~-~PdGl~vD~~----G~l~Va~~~~g~V~~  253 (319)
T d2dg1a1         190 -----------VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHE-GPDSCCIDSD----DNLYVAMYGQGRVLV  253 (319)
T ss_dssp             -----------EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSS-EEEEEEEBTT----CCEEEEEETTTEEEE
T ss_pred             -----------eEEEecccCCceEEEEEcCCCceeccccceeeeccCCcc-ceeeeeEcCC----CCEEEEEcCCCEEEE
Confidence                       345666778889999986431110     1111111121 1245777776    467788888999999


Q ss_pred             EEeecCCCcccceEee------ccccCeEEEEeecCCCEEEEEeC
Q 036510          240 WTVAREGDQWEGKVLH------DFKTPVYRVSWSLTGNILAVADG  278 (288)
Q Consensus       240 w~~~~~~~~~~~~~~~------~~~~~i~~~~~spdg~~l~s~~~  278 (288)
                      ++.+-  ..  ...+.      ++...+++++|.|++..+++...
T Consensus       254 ~~p~G--~~--l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         254 FNKRG--YP--IGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             ECTTS--CE--EEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             ECCCC--cE--EEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            98541  11  11121      11224689999999887776654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.38  E-value=0.02  Score=45.07  Aligned_cols=153  Identities=14%  Similarity=0.130  Sum_probs=94.6

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEE--eccccCeEEEEecCCCCCCEEEEeeCCCcEEEeecCCC
Q 036510           12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKL--SGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS   89 (288)
Q Consensus        12 ~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~iwd~~~~   89 (288)
                      .....+++.++|+++++....+.+.+++.+   ++.+.++  ..+......+++.+  +++++++....+.|++++.. +
T Consensus       114 ~~p~~~avd~~G~i~v~~~~~~~~~~~~~~---g~~~~~~g~~~~~~~~~~i~~d~--~g~i~v~d~~~~~V~~~d~~-G  187 (279)
T d1q7fa_         114 QHPRGVTVDNKGRIIVVECKVMRVIIFDQN---GNVLHKFGCSKHLEFPNGVVVND--KQEIFISDNRAHCVKVFNYE-G  187 (279)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECTT---SCEEEEEECTTTCSSEEEEEECS--SSEEEEEEGGGTEEEEEETT-C
T ss_pred             cccceeccccCCcEEEEeeccceeeEeccC---Cceeecccccccccccceeeecc--ceeEEeeeccccceeeeecC-C
Confidence            445677888889888877777777776643   2344444  34556678888864  47888888999999999864 3


Q ss_pred             CceEEeEEee--cCCCceeEEEeccCCCCeEEEEEeC-CCcEEEEeecCCCCeeeEEee-ccCCCCeeEEEeCCCCCCCc
Q 036510           90 NEWIKDHVFE--DHKSSVNSIDWAPHELGLCLACGSS-DGNISVFTARADGGWDTSRID-QAHPVGVTSVSWAPSTAPGA  165 (288)
Q Consensus        90 ~~~~~~~~~~--~h~~~v~~l~~~p~~~~~~l~sg~~-d~~i~i~d~~~~~~~~~~~~~-~~~~~~v~~i~~~p~~~~~~  165 (288)
                      +   ...++.  +.......+++.|+  +.++++-.. ...|.+|+.  .+.+.. .+. .........|+..|++    
T Consensus       188 ~---~~~~~g~~g~~~~P~giavD~~--G~i~Vad~~~~~~v~~f~~--~G~~~~-~~~~~~~~~~p~~vav~~dG----  255 (279)
T d1q7fa_         188 Q---YLRQIGGEGITNYPIGVGINSN--GEILIADNHNNFNLTIFTQ--DGQLIS-ALESKVKHAQCFDVALMDDG----  255 (279)
T ss_dssp             C---EEEEESCTTTSCSEEEEEECTT--CCEEEEECSSSCEEEEECT--TSCEEE-EEEESSCCSCEEEEEEETTT----
T ss_pred             c---eeeeecccccccCCcccccccC--CeEEEEECCCCcEEEEECC--CCCEEE-EEeCCCCCCCEeEEEEeCCC----
Confidence            3   223332  34445778888887  455555433 346888873  223221 111 1112235566666664    


Q ss_pred             eecccccCCCceeEEeecCCcEEEEEEe
Q 036510          166 LVGSGFLDPVQKLCSGGCDNTVKVWKLY  193 (288)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~  193 (288)
                                .+++ ...++.|++|...
T Consensus       256 ----------~l~V-~~~n~~v~~fr~~  272 (279)
T d1q7fa_         256 ----------SVVL-ASKDYRLYIYRYV  272 (279)
T ss_dssp             ----------EEEE-EETTTEEEEEECS
T ss_pred             ----------cEEE-EeCCCeEEEEEee
Confidence                      4444 4578899999753

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.29  E-value=0.023  Score=43.92  Aligned_cols=52  Identities=12%  Similarity=0.130  Sum_probs=35.8

Q ss_pred             EcCC--CCEEEEeeCCCcEEEEEeCCCCceeeEEEeccccCeEEEEecCCCCCCEEEEee
Q 036510           19 MDYY--GKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCS   76 (288)
Q Consensus        19 ~s~~--g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s   76 (288)
                      ++||  |+++|=.+. +.+.+.|++++.   ...|..+.+.+...+|||+  |+.|+-.+
T Consensus         6 ~sPdi~G~~v~f~~~-~dl~~~d~~~g~---~~~Lt~~~~~~~~p~~SPD--G~~iaf~~   59 (281)
T d1k32a2           6 LNPDIHGDRIIFVCC-DDLWEHDLKSGS---TRKIVSNLGVINNARFFPD--GRKIAIRV   59 (281)
T ss_dssp             EEEEEETTEEEEEET-TEEEEEETTTCC---EEEEECSSSEEEEEEECTT--SSEEEEEE
T ss_pred             cCCCCCCCEEEEEeC-CcEEEEECCCCC---EEEEecCCCcccCEEECCC--CCEEEEEE
Confidence            5788  988775543 456666775432   4456777778889999975  88887543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.001  Score=57.20  Aligned_cols=144  Identities=10%  Similarity=0.110  Sum_probs=80.7

Q ss_pred             EeccCCCCeEEEEEeCCCcEEEEeecCCCCeeeEEeeccCCCCeeEEEeCCCCCCCceecccccCCCceeEEe-------
Q 036510          109 DWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSG-------  181 (288)
Q Consensus       109 ~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~-------  181 (288)
                      .|.++.  .++ .-..+|.|.+|++.++..........-....+....|||++.              .++..       
T Consensus        23 ~W~~~~--~~~-~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~--------------~vl~~~~~~~~~   85 (465)
T d1xfda1          23 KWISDT--EFI-YREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDRE--------------YALFSYNVEPIY   85 (465)
T ss_dssp             CBSSSS--CBC-CCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSS--------------EEEEEESCCCCS
T ss_pred             EEeCCC--cEE-EEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCC--------------eEEEEEccccee
Confidence            576663  222 235677899999886643221111111233567788999873              32222       


Q ss_pred             --ecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCCCcEEEEEeecCCCcccceEeecc-c
Q 036510          182 --GCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDF-K  258 (288)
Q Consensus       182 --~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~-~  258 (288)
                        +..+.+.++|+.++..  +.+.........+....|||++    +.||-.. ++.|.+.+.....   ...+.... .
T Consensus        86 r~s~~~~~~i~d~~~~~~--~~l~~~~~~~~~l~~~~wSPDG----~~iafv~-~~nl~~~~~~~~~---~~~lt~~g~~  155 (465)
T d1xfda1          86 QHSYTGYYVLSKIPHGDP--QSLDPPEVSNAKLQYAGWGPKG----QQLIFIF-ENNIYYCAHVGKQ---AIRVVSTGKE  155 (465)
T ss_dssp             SSCCCSEEEEEESSSCCC--EECCCTTCCSCCCSBCCBCSST----TCEEEEE-TTEEEEESSSSSC---CEEEECCCBT
T ss_pred             EeeccccEEEEEccCCce--eeccCccCCccccceeeeccCC----ceEEEEe-cceEEEEecCCCc---eEEEecccCc
Confidence              3456788999887632  2222223334446667999985    5676654 5667776654321   11122111 1


Q ss_pred             cC-----------------eEEEEeecCCCEEEEEeCC
Q 036510          259 TP-----------------VYRVSWSLTGNILAVADGN  279 (288)
Q Consensus       259 ~~-----------------i~~~~~spdg~~l~s~~~d  279 (288)
                      +.                 -..+-|||||++||....|
T Consensus       156 ~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D  193 (465)
T d1xfda1         156 GVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIN  193 (465)
T ss_dssp             TTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEE
T ss_pred             ceeeccccchhhhhhhccccceEEECCCCCeEEEEEec
Confidence            11                 1467899999999998654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.66  E-value=0.1  Score=41.20  Aligned_cols=191  Identities=12%  Similarity=0.058  Sum_probs=99.4

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCcEEEEEeCCCCceeeEEEecc--ccCeEEEEecCCCCCCEEEEeeC----CCcEEEee
Q 036510           12 DTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGH--KGAVWEVAWAHPKFGSILASCSF----DGTVIIWK   85 (288)
Q Consensus        12 ~~v~~~~~s~~g~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~s~----d~~v~iwd   85 (288)
                      ..+.++.+.++|+++++ +.+ -+.++|...+..+.+......  ...++.+...+  +|.+.++...    .+.-.+|.
T Consensus        59 ~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~--~G~iw~~~~~~~~~~~~g~l~~  134 (295)
T d2ghsa1          59 FMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP--SGALWIGTMGRKAETGAGSIYH  134 (295)
T ss_dssp             SCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT--TSCEEEEEEETTCCTTCEEEEE
T ss_pred             CCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECC--CCCEEEEeccccccccceeEee
Confidence            45677888888877765 444 467777654433333222111  12467787764  3776665432    23445665


Q ss_pred             cCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCe--e---eEEeeccCCCCeeEEEeCCC
Q 036510           86 EGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGW--D---TSRIDQAHPVGVTSVSWAPS  160 (288)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~--~---~~~~~~~~~~~v~~i~~~p~  160 (288)
                      +.++..   ..... ....-+.+.|+|++ ..++.+-+..+.|..|++......  .   ......+.......+...++
T Consensus       135 ~~~g~~---~~~~~-~~~~~Ng~~~s~d~-~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~  209 (295)
T d2ghsa1         135 VAKGKV---TKLFA-DISIPNSICFSPDG-TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAE  209 (295)
T ss_dssp             EETTEE---EEEEE-EESSEEEEEECTTS-CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTT
T ss_pred             ecCCcE---EEEee-ccCCcceeeecCCC-ceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCC
Confidence            544431   11122 22346789999985 345666677888888887532211  0   11111111222334444444


Q ss_pred             CCCCceecccccCCCceeEEeecCCcEEEEEEeCCceeeeeeeccccCCcceEEEEec-CCCCCCCcEEEEEeC
Q 036510          161 TAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWA-PNLGLPKSTIASASE  233 (288)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~s-p~~~~~~~~l~s~s~  233 (288)
                      +              ++.++.-..+.|..||.. +.    .+..+..-...+++++|- |+.   ..+++|.+.
T Consensus       210 G--------------nlWva~~~~g~V~~~dp~-G~----~~~~i~lP~~~~T~~~FGG~d~---~~LyvTta~  261 (295)
T d2ghsa1         210 G--------------HIWNARWGEGAVDRYDTD-GN----HIARYEVPGKQTTCPAFIGPDA---SRLLVTSAR  261 (295)
T ss_dssp             S--------------CEEEEEETTTEEEEECTT-CC----EEEEEECSCSBEEEEEEESTTS---CEEEEEEBC
T ss_pred             C--------------CEEeeeeCCCceEEecCC-Cc----EeeEecCCCCceEEEEEeCCCC---CEEEEEECC
Confidence            3              444444345678888853 32    223333333457888986 443   345565443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.11  E-value=0.54  Score=36.75  Aligned_cols=192  Identities=8%  Similarity=0.011  Sum_probs=104.0

Q ss_pred             EecCCCCCCEEEEeeCCCcEEEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCCCcEEEEeecCCCCeee
Q 036510           62 AWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDT  141 (288)
Q Consensus        62 ~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d~~i~i~d~~~~~~~~~  141 (288)
                      .|.+. ++.++.+=-..+.|.-||..++.    ...+. ....+.++.+.++  +.++++ +.+ .|.++|..++. ...
T Consensus        24 ~wd~~-~~~l~wvDi~~~~I~r~d~~~g~----~~~~~-~~~~~~~i~~~~d--g~l~va-~~~-gl~~~d~~tg~-~~~   92 (295)
T d2ghsa1          24 TFDPA-SGTAWWFNILERELHELHLASGR----KTVHA-LPFMGSALAKISD--SKQLIA-SDD-GLFLRDTATGV-LTL   92 (295)
T ss_dssp             EEETT-TTEEEEEEGGGTEEEEEETTTTE----EEEEE-CSSCEEEEEEEET--TEEEEE-ETT-EEEEEETTTCC-EEE
T ss_pred             eEECC-CCEEEEEECCCCEEEEEECCCCe----EEEEE-CCCCcEEEEEecC--CCEEEE-EeC-ccEEeecccce-eeE
Confidence            45432 24444443456788888886653    12222 2346788888776  555554 444 57788876543 221


Q ss_pred             EEeeccC--CCCeeEEEeCCCCCCCceecccccCCCceeEEeec----CCcEEEEEEeCCceeeeeeeccccCCcceEEE
Q 036510          142 SRIDQAH--PVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGC----DNTVKVWKLYNGIWKMDCFPALQMHTDWVRDV  215 (288)
Q Consensus       142 ~~~~~~~--~~~v~~i~~~p~~~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v  215 (288)
                      .......  ...+..+...|++              ++.++...    .+.-.+|.+..+... ..   .... ..-+.+
T Consensus        93 l~~~~~~~~~~~~nd~~vd~~G--------------~iw~~~~~~~~~~~~g~l~~~~~g~~~-~~---~~~~-~~~Ng~  153 (295)
T d2ghsa1          93 HAELESDLPGNRSNDGRMHPSG--------------ALWIGTMGRKAETGAGSIYHVAKGKVT-KL---FADI-SIPNSI  153 (295)
T ss_dssp             EECSSTTCTTEEEEEEEECTTS--------------CEEEEEEETTCCTTCEEEEEEETTEEE-EE---EEEE-SSEEEE
T ss_pred             EeeeecCCCcccceeeEECCCC--------------CEEEEeccccccccceeEeeecCCcEE-EE---eecc-CCccee
Confidence            1111111  1235667777765              33332221    223456666665211 11   1111 124778


Q ss_pred             EecCCCCCCCcEEEEEeCCCcEEEEEeecCCCccc--ceEee---ccccCeEEEEeecCCCEEEEEeCCCcEEEeE
Q 036510          216 AWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWE--GKVLH---DFKTPVYRVSWSLTGNILAVADGNNNVTLWE  286 (288)
Q Consensus       216 ~~sp~~~~~~~~l~s~s~D~~i~iw~~~~~~~~~~--~~~~~---~~~~~i~~~~~spdg~~l~s~~~d~~v~~w~  286 (288)
                      .|+|+.   ..++++-+..+.|..+++........  .....   +.......+++..+|++.++.-..+.|..|+
T Consensus       154 ~~s~d~---~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d  226 (295)
T d2ghsa1         154 CFSPDG---TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD  226 (295)
T ss_dssp             EECTTS---CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred             eecCCC---ceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec
Confidence            999985   34677778888999998764321111  11111   1223467788888998777655566777766

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=92.36  E-value=0.66  Score=35.01  Aligned_cols=83  Identities=12%  Similarity=0.093  Sum_probs=47.4

Q ss_pred             CCcEEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeC-C---CcEEEEEeecCCCcccceEeec---
Q 036510          184 DNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASE-D---GKVIIWTVAREGDQWEGKVLHD---  256 (288)
Q Consensus       184 d~~i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~-D---~~i~iw~~~~~~~~~~~~~~~~---  256 (288)
                      ++.|-+.|+.++.     ...+..+...+....||||+    ++||-... +   ..-.+|-.......  ...+..   
T Consensus        20 ~~dl~~~d~~~g~-----~~~Lt~~~~~~~~p~~SPDG----~~iaf~~~~~~~~~~~~i~~~~~~~g~--~~~lt~~~~   88 (281)
T d1k32a2          20 CDDLWEHDLKSGS-----TRKIVSNLGVINNARFFPDG----RKIAIRVMRGSSLNTADLYFYNGENGE--IKRITYFSG   88 (281)
T ss_dssp             TTEEEEEETTTCC-----EEEEECSSSEEEEEEECTTS----SEEEEEEEESTTCCEEEEEEEETTTTE--EEECCCCCE
T ss_pred             CCcEEEEECCCCC-----EEEEecCCCcccCEEECCCC----CEEEEEEeeCCCCCceEEEEEEecCCc--eEEeeecCC
Confidence            3456666776653     12344566678899999985    67775532 2   23344444332211  111211   


Q ss_pred             ----cccCeEEEEeecCCCEEEEEe
Q 036510          257 ----FKTPVYRVSWSLTGNILAVAD  277 (288)
Q Consensus       257 ----~~~~i~~~~~spdg~~l~s~~  277 (288)
                          .........|+|||+.|+...
T Consensus        89 ~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          89 KSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             EEETTEECSEEEEECTTCCEEEEEC
T ss_pred             CccCccccccccccCCCCCEEEEEE
Confidence                112456789999999998764

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=92.29  E-value=0.35  Score=38.96  Aligned_cols=92  Identities=12%  Similarity=0.224  Sum_probs=55.0

Q ss_pred             EEEEEEeCCceeeeeeeccccCCcceEEEEecCCCCCCCcEEEEEeCC-CcEEEEEeecCCCcccceEeecc--ccCeEE
Q 036510          187 VKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASED-GKVIIWTVAREGDQWEGKVLHDF--KTPVYR  263 (288)
Q Consensus       187 i~iwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~~~l~s~s~D-~~i~iw~~~~~~~~~~~~~~~~~--~~~i~~  263 (288)
                      +.+||..++.+..... ....|........+.+++    .+++.|+.+ ..+.+||+....  +.  .....  ...-..
T Consensus        54 ~~~yd~~t~~w~~~~~-~~~~~~~~~~~~~~~~~g----~i~v~Gg~~~~~~~~yd~~~~~--w~--~~~~~~~~r~~~~  124 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTV-TVTKHDMFCPGISMDGNG----QIVVTGGNDAKKTSLYDSSSDS--WI--PGPDMQVARGYQS  124 (387)
T ss_dssp             EEEECTTTCCBCCCEE-EECSCCCSSCEEEECTTS----CEEEECSSSTTCEEEEEGGGTE--EE--ECCCCSSCCSSCE
T ss_pred             EEEEECCCCcEeecCC-CCCCcccceeEEEEecCC----cEEEeecCCCcceeEecCccCc--cc--ccccccccccccc
Confidence            6689998876643211 112233334455677763    677777655 589999987542  21  11111  122345


Q ss_pred             EEeecCCCEEEEEeCC------CcEEEeEc
Q 036510          264 VSWSLTGNILAVADGN------NNVTLWEE  287 (288)
Q Consensus       264 ~~~spdg~~l~s~~~d------~~v~~w~~  287 (288)
                      ++..+||++++.|+.+      +.+.+||.
T Consensus       125 ~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~  154 (387)
T d1k3ia3         125 SATMSDGRVFTIGGSWSGGVFEKNGEVYSP  154 (387)
T ss_dssp             EEECTTSCEEEECCCCCSSSCCCCEEEEET
T ss_pred             eeeecCCceeeeccccccccccceeeeecC
Confidence            7778899999998753      36788874

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=92.27  E-value=1.3  Score=35.39  Aligned_cols=116  Identities=13%  Similarity=0.099  Sum_probs=67.0

Q ss_pred             EEEEEcCCCCEEEEeeCCC-----------cEEEEEeCCCCceeeEEE-eccccCeEEEEecCCCCCCEEEEeeCC-CcE
Q 036510           15 HDVAMDYYGKRLATASSDY-----------SIKIIGVGNNTSQHLAKL-SGHKGAVWEVAWAHPKFGSILASCSFD-GTV   81 (288)
Q Consensus        15 ~~~~~s~~g~~l~s~~~d~-----------~i~lwd~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~d-~~v   81 (288)
                      .......+|+.++-|+.+.           .+.+||....+...+..+ ..|.......++..  ++.+++.|+.+ .++
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~--~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG--NGQIVVTGGNDAKKT  100 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT--TSCEEEECSSSTTCE
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEec--CCcEEEeecCCCcce
Confidence            3444567888888888531           267898865544333333 22333233445554  48888888755 689


Q ss_pred             EEeecCCCCceEEeEEeecCCCceeEEEeccCCCCeEEEEEeCC------CcEEEEeecCC
Q 036510           82 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSD------GNISVFTARAD  136 (288)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~l~sg~~d------~~i~i~d~~~~  136 (288)
                      .+||..+. .|...-.+...+ ...++...++  +++++.|+.+      +.+.+||..++
T Consensus       101 ~~yd~~~~-~w~~~~~~~~~r-~~~~~~~~~d--G~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         101 SLYDSSSD-SWIPGPDMQVAR-GYQSSATMSD--GRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             EEEEGGGT-EEEECCCCSSCC-SSCEEEECTT--SCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             eEecCccC-cccccccccccc-cccceeeecC--CceeeeccccccccccceeeeecCCCC
Confidence            99998753 343322222222 2234555555  5667777543      36888987653

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=81.07  E-value=13  Score=30.46  Aligned_cols=29  Identities=17%  Similarity=0.062  Sum_probs=23.3

Q ss_pred             CeEEEEeecCCCEEEEEe-CCCcEEEeEcC
Q 036510          260 PVYRVSWSLTGNILAVAD-GNNNVTLWEEA  288 (288)
Q Consensus       260 ~i~~~~~spdg~~l~s~~-~d~~v~~w~~~  288 (288)
                      ....+..+|||+++++++ .+.+|.|.|++
T Consensus       276 sPHGV~vSPDGKyi~VaGKLs~tVSViD~~  305 (459)
T d1fwxa2         276 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVT  305 (459)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred             CCCceEECCCCCEEEEeCCcCCcEEEEEeh
Confidence            356789999999987776 47899999863