Citrus Sinensis ID: 036513

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------7
Protein Sequence
MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQAYVDDLSNNVEEDLEGAVHEDQPISPASEH
Secondary Structure (PSIPRED)
cccEEEEHHHHHHccccccEEEEcccccccccccEEEEccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEHEEHHHHHcccccccEEEEcccccccccccEEEcEEEEcccccccccccccccHccccccccccc
Coil and Loop (DISEMBL)
MERFLFRVKALLHTkssgctfwmgnlkhkdlmGQVVSSQAyvddlsnnveedlegavhedqpispaseh
Flexible Loop (DISEMBL)
MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQAYVDDLSNNVEEDlegavhedqpispaseh
Low Complexity Region (SEG)
MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQAYVDDLSNNVEEDLEGAVHEDQPISPASEH
Disordered region (IsUnstruct)
***FLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQAYVD**************************
Disordered Region (DISOPRED)
MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQ***********************************
Disordered Region (DISEMBL)
MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQAYVDDLSNNVEEDL****************
Disordered Region (DISPRO)
MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQAYVDDL************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQAYVDDLSNNVEEDLEGAVHEDQPISPASEH
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
224089843	1476	predicted protein [Populus trichocarpa]	0.985	0.046	0.823	2e-25
359485479	1069	PREDICTED: LOW QUALITY PROTEIN: Fanconi	0.985	0.063	0.705	9e-20
302143494	1507	unnamed protein product [Vitis vinifera]	0.985	0.045	0.705	1e-19
240255840	1489	fanconi anemia group D2 protein [Arabido	0.942	0.043	0.579	1e-14
255563179	1188	conserved hypothetical protein [Ricinus	0.985	0.057	0.661	3e-13
297741962	40	unnamed protein product [Vitis vinifera]	0.579	1.0	0.925	5e-13
297741953	53	unnamed protein product [Vitis vinifera]	0.579	0.754	0.9	2e-12
218199106	1489	hypothetical protein OsI_24939 [Oryza sa	0.927	0.042	0.549	9e-12
414592055	400	TPA: hypothetical protein ZEAMMB73_49716	0.913	0.157	0.579	4e-10
168047822	1660	predicted protein [Physcomitrella patens	0.594	0.024	0.682	2e-08

>gi|224089843|ref|XP_002308832.1| predicted protein [Populus trichocarpa] gi|222854808|gb|EEE92355.1| predicted protein [Populus trichocarpa]

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/68 (82%), Positives = 60/68 (88%)

Query: 1    MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQAYVDDLSNNVEEDLEGAVHED 60
            MERFLFRVKALLH+ SSGCTFWMGNLKHKDL GQVVSSQAY DD +NNV+EDL  AV ED
Sbjct: 1404 MERFLFRVKALLHSTSSGCTFWMGNLKHKDLTGQVVSSQAYADDQNNNVDEDLAEAVEED 1463

Query: 61   QPISPASE 68
            QP+S ASE
Sbjct: 1464 QPVSVASE 1471

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485479|ref|XP_002278254.2| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group D2 protein-like [Vitis vinifera]

 Score =  100 bits (250), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 55/68 (80%)

Query: 1    MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQAYVDDLSNNVEEDLEGAVHED 60
            MERFLFRVKALLHT  S CTFWMGNLKHKDLMGQVVSSQAY+D  ++N++E+ E  + ED
Sbjct: 997  MERFLFRVKALLHTSPSECTFWMGNLKHKDLMGQVVSSQAYMDHQNDNLDENPEEPIAED 1056

Query: 61   QPISPASE 68
            Q    ASE
Sbjct: 1057 QSTGDASE 1064

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143494|emb|CBI22055.3| unnamed protein product [Vitis vinifera]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 55/68 (80%)

Query: 1    MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQAYVDDLSNNVEEDLEGAVHED 60
            MERFLFRVKALLHT  S CTFWMGNLKHKDLMGQVVSSQAY+D  ++N++E+ E  + ED
Sbjct: 1435 MERFLFRVKALLHTSPSECTFWMGNLKHKDLMGQVVSSQAYMDHQNDNLDENPEEPIAED 1494

Query: 61   QPISPASE 68
            Q    ASE
Sbjct: 1495 QSTGDASE 1502

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240255840|ref|NP_193233.5| fanconi anemia group D2 protein [Arabidopsis thaliana] gi|332658132|gb|AEE83532.1| fanconi anemia group D2 protein [Arabidopsis thaliana]

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 4/69 (5%)

Query: 1    MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQAYVDDLSNNVEEDLEG---AV 57
            +ERFLF VKALLH  S G  FWMG+LKHKDL GQ+VSSQAY+D+ ++ VEE + G    +
Sbjct: 1421 LERFLFHVKALLHRTSGGSNFWMGSLKHKDLRGQIVSSQAYIDNEADEVEETMSGEEEPM 1480

Query: 58   HEDQ-PISP 65
             ED+ P++P
Sbjct: 1481 QEDELPLTP 1489

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563179|ref|XP_002522593.1| conserved hypothetical protein [Ricinus communis] gi|223538184|gb|EEF39794.1| conserved hypothetical protein [Ricinus communis]

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/68 (66%), Positives = 50/68 (73%)

Query: 1    MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQAYVDDLSNNVEEDLEGAVHED 60
            +ERFLF VKALLH  S+  TFWMGNLKHKDLMGQVV SQ Y DD   +V+ DL  A   +
Sbjct: 1102 IERFLFHVKALLHATSNARTFWMGNLKHKDLMGQVVGSQVYGDDQDADVDGDLAEAEDNN 1161

Query: 61   QPISPASE 68
            QPIS ASE
Sbjct: 1162 QPISVASE 1169

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741962|emb|CBI33407.3| unnamed protein product [Vitis vinifera]

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/40 (92%), Positives = 37/40 (92%)

Query: 1  MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQA 40
          ME FLFRVKALLHT SS CTFWMGNLKHKDLMGQVVSSQA
Sbjct: 1  MECFLFRVKALLHTTSSECTFWMGNLKHKDLMGQVVSSQA 40

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741953|emb|CBI33398.3| unnamed protein product [Vitis vinifera]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/40 (90%), Positives = 36/40 (90%)

Query: 1  MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQA 40
          ME FLFRVKALLHT SS CTFWMGNLKHK LMGQVVSSQA
Sbjct: 14 MECFLFRVKALLHTTSSECTFWMGNLKHKYLMGQVVSSQA 53

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218199106|gb|EEC81533.1| hypothetical protein OsI_24939 [Oryza sativa Indica Group] gi|222636453|gb|EEE66585.1| hypothetical protein OsJ_23134 [Oryza sativa Japonica Group]

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 50/71 (70%), Gaps = 7/71 (9%)

Query: 1    MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQAY--VDDLSNNVEEDLEGAVH 58
            +ERF+F+VKALLH  S+  TFWMGNL+HKDL GQ+VSSQ Y  VDD  N+ +E +     
Sbjct: 1405 LERFVFQVKALLHNCSTEETFWMGNLRHKDLQGQLVSSQVYGSVDDSPNDEQEQM----- 1459

Query: 59   EDQPISPASEH 69
            E  P +PA E+
Sbjct: 1460 ETDPETPADEN 1470

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414592055|tpg|DAA42626.1| TPA: hypothetical protein ZEAMMB73_497165 [Zea mays]

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/69 (57%), Positives = 46/69 (66%), Gaps = 6/69 (8%)

Query: 1   MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQAYVDDLSNNVEEDLEGAVHED 60
           MERFLF+VKALLH+ S+   F MGNLKHKDL G VVSSQAY      NV+E+ E     D
Sbjct: 314 MERFLFQVKALLHSCSAEKEFQMGNLKHKDLQGHVVSSQAY-----GNVDEEDEEQTEVD 368

Query: 61  QPISPASEH 69
             + PA EH
Sbjct: 369 SDL-PADEH 376

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168047822|ref|XP_001776368.1| predicted protein [Physcomitrella patens subsp. patens] gi|162672328|gb|EDQ58867.1| predicted protein [Physcomitrella patens subsp. patens]

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 33/41 (80%)

Query: 1    MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQAY 41
            ME+F+F VKALLH  S+G  FWMGNLKHKDL G+ V+SQ Y
Sbjct: 1584 MEKFIFCVKALLHGASNGSAFWMGNLKHKDLQGREVASQLY 1624

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
TAIR|locus:2129545	1489	AT4G14970 "AT4G14970" [Arabido	0.942	0.043	0.579	6.5e-15
UNIPROTKB|E1BS46	1439	FANCD2 "Uncharacterized protei	0.869	0.041	0.380	0.0001
UNIPROTKB|F1SQC5	1451	FANCD2 "Uncharacterized protei	0.884	0.042	0.360	0.00035
ZFIN|ZDB-GENE-040116-5	1659	fancd2 "Fanconi anemia, comple	0.913	0.037	0.333	0.00052
UNIPROTKB|Q9BXW9	1471	FANCD2 "Fanconi anemia group D	0.768	0.036	0.358	0.00075
UNIPROTKB|E1BE83	1449	FANCD2 "Uncharacterized protei	0.884	0.042	0.365	0.00094

TAIR|locus:2129545 AT4G14970 "AT4G14970" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 6.5e-15, P = 6.5e-15
 Identities = 40/69 (57%), Positives = 52/69 (75%)

Query:     1 MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQAYVDDLSNNVEEDLEGA---V 57
             +ERFLF VKALLH  S G  FWMG+LKHKDL GQ+VSSQAY+D+ ++ VEE + G    +
Sbjct:  1421 LERFLFHVKALLHRTSGGSNFWMGSLKHKDLRGQIVSSQAYIDNEADEVEETMSGEEEPM 1480

Query:    58 HEDQ-PISP 65
              ED+ P++P
Sbjct:  1481 QEDELPLTP 1489

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

GO:0032204 "regulation of telomere maintenance" evidence=RCA

GO:0032504 "multicellular organism reproduction" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0043247 "telomere maintenance in response to DNA damage" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

UNIPROTKB|E1BS46 FANCD2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 108 (43.1 bits), Expect = 0.00010, P = 0.00010
 Identities = 24/63 (38%), Positives = 38/63 (60%)

Query:     1 MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQAYV---DDLSNNVEEDLEGAV 57
             +E+F++RVKA+L        FW+G LK++DL G+ + SQA     +D +   EED E + 
Sbjct:  1364 LEQFVYRVKAMLAFNHCQEAFWVGVLKNRDLQGEEILSQASAAPEEDSAEGSEEDTEDSA 1423

Query:    58 HED 60
              E+
Sbjct:  1424 AEE 1426

GO:0000793 "condensed chromosome" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0007129 "synapsis" evidence=IEA

GO:0007276 "gamete generation" evidence=IEA

GO:0010332 "response to gamma radiation" evidence=IEA

UNIPROTKB|F1SQC5 FANCD2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 103 (41.3 bits), Expect = 0.00035, P = 0.00035
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query:     1 MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQAYVDDLSNNVEEDLEGAVHED 60
             +E  + RVKA+L   S    FW+GNLK++DL G+ + SQ   +  +   EED    V + 
Sbjct:  1365 LELLVCRVKAMLTLNSCREAFWLGNLKNRDLQGEEIISQNSQESTAEESEEDTASQVSKS 1424

Query:    61 Q 61
             +
Sbjct:  1425 K 1425

GO:0010332 "response to gamma radiation" evidence=IEA

GO:0007276 "gamete generation" evidence=IEA

GO:0007129 "synapsis" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0000793 "condensed chromosome" evidence=IEA

ZFIN|ZDB-GENE-040116-5 fancd2 "Fanconi anemia, complementation group D2" [Danio rerio (taxid:7955)]

 Score = 102 (41.0 bits), Expect = 0.00052, P = 0.00052
 Identities = 23/69 (33%), Positives = 42/69 (60%)

Query:     1 MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQ-VVSSQAYVDDLSNNVEEDLEGAVHE 59
             +E+F++RVKA+L        FW+GNLK++DL G+ ++S ++   D     EE+ E +  +
Sbjct:  1366 LEQFVYRVKAMLTLNHCQEAFWLGNLKNRDLKGEEILSQRSQAAD-----EEEEESSQLQ 1420

Query:    60 DQPISPASE 68
              +  +PA +
Sbjct:  1421 SEAETPADQ 1429

GO:0043066 "negative regulation of apoptotic process" evidence=IGI;IMP

UNIPROTKB|Q9BXW9 FANCD2 "Fanconi anemia group D2 protein" [Homo sapiens (taxid:9606)]

 Score = 100 (40.3 bits), Expect = 0.00075, P = 0.00075
 Identities = 19/53 (35%), Positives = 33/53 (62%)

Query:     1 MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQAYVDDLSNNVEEDL 53
             +E  + RVKA+L   +    FW+GNLK++DL G+ + SQ   +  ++  E+D+
Sbjct:  1364 LELLVCRVKAMLTLNNCREAFWLGNLKNRDLQGEEIKSQNSQESTADESEDDM 1416

GO:0000793 "condensed chromosome" evidence=IEA

GO:0007129 "synapsis" evidence=IEA

GO:0007276 "gamete generation" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0010332 "response to gamma radiation" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006281 "DNA repair" evidence=TAS

UNIPROTKB|E1BE83 FANCD2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 99 (39.9 bits), Expect = 0.00094, P = 0.00094
 Identities = 23/63 (36%), Positives = 35/63 (55%)

Query:     1 MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQAYVDDLSNNVEED--LEGAVH 58
             +E  + RVKA+L   +    FW+GNLK++DL G+ + SQ   +  +N  E D   +GA  
Sbjct:  1363 LELLVCRVKAMLILNNCREAFWLGNLKNRDLQGEEIISQNSQESTANESEGDTSFQGAEQ 1422

Query:    59 EDQ 61
               Q
Sbjct:  1423 TSQ 1425


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.130   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       69        69   0.00091  102 3  11 22  0.48    28
                                                     29  0.39    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  540 (57 KB)
  Total size of DFA:  97 KB (2068 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.69u 0.10s 9.79t   Elapsed:  00:00:01
  Total cpu time:  9.69u 0.10s 9.79t   Elapsed:  00:00:01
  Start:  Thu May  9 16:44:49 2013   End:  Thu May  9 16:44:50 2013

GO:0010332 "response to gamma radiation" evidence=IEA

GO:0007276 "gamete generation" evidence=IEA

GO:0007129 "synapsis" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0000793 "condensed chromosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_VI000204 hypothetical protein (1476 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	69
cd11721	1161	cd11721, FANCD2, Fanconi anemia D2 protein	9e-15

>gnl|CDD|212595 cd11721, FANCD2, Fanconi anemia D2 protein

 Score = 66.2 bits (162), Expect = 9e-15
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 1    MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQA 40
            +E  ++RVKA+L   +    FWMGNLK+KDL G+ + SQ 
Sbjct: 1122 LETLVYRVKAMLVANNCSEAFWMGNLKNKDLQGEEILSQR 1161

The Fanconi anemia ID complex consists of two subunits, Fanconi anemia I and Fanconi anemia D2 (FANCI-FANCD2) and plays a central role in the repair of DNA interstrand cross-links (ICLs). The complex is activated via DNA damage-induced phosphorylation by ATR (ataxia telangiectasia and Rad3-related) and monoubiquitination by the FA core complex ubiquitin ligase, and it binds to DNA at the ICL site, recognizing branched DNA structures. Defects in the complex cause Fanconi anemia, a cancer predisposition syndrome. The phosphorylation of FANCD2 is required for DNA damage-induced intra-S phase checkpoint and for cellular resistance to DNA crosslinking agents. Length = 1161

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	69
PF14631	1426	FancD2: Fanconi anaemia protein FancD2 nuclease; P	99.88
KOG4712	1335	consensus Uncharacterized conserved protein [Funct	99.52

>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B

Probab=99.88  E-value=1.2e-24  Score=186.57  Aligned_cols=59  Identities=46%  Similarity=0.749  Sum_probs=24.5

Q ss_pred             CchhhhhhHHHHhhCCCcceeeecccccCCCCCcEeeeccccCCCCCcchhcccccCCC
Q 036513            1 MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQAYVDDLSNNVEEDLEGAVHE   59 (69)
Q Consensus         1 LE~fvfrVKalL~~n~c~~AFwmGNLKnkDL~G~~I~SQ~~~~d~~d~~eed~e~~~~~   59 (69)
                      ||+|||||||||++|+|++||||||||||||+|++|+||.+.++++|++|+|.+++..+
T Consensus      1366 lE~~v~~VKa~L~~n~c~~AFw~GnLKnrdL~G~eI~sq~~~~~~~d~~e~~~~~~~~~ 1424 (1426)
T PF14631_consen 1366 LETFVFRVKAMLVANNCSEAFWMGNLKNRDLDGEEILSQRSSEDDEDESEEDVESEVSE 1424 (1426)
T ss_dssp             HHHHHHHHHHHH-SS--HHHHHHHHHTS-------------------------------
T ss_pred             HHHHHHHHHHHHHHCCchhhhhhcccccCCCCCCeeeCCCCCccccccccccccchhcc
Confidence            69999999999999999999999999999999999999999888888777777666544

>KOG4712 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.52  E-value=1.5e-15  Score=130.24  Aligned_cols=57  Identities=33%  Similarity=0.624  Sum_probs=52.4

Q ss_pred             CchhhhhhHHHHhhCCCcceeeecccccCCCCCcEeeec-cccCCCCCcchhcccccC
Q 036513            1 MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQ-AYVDDLSNNVEEDLEGAV   57 (69)
Q Consensus         1 LE~fvfrVKalL~~n~c~~AFwmGNLKnkDL~G~~I~SQ-~~~~d~~d~~eed~e~~~   57 (69)
                      +|..+.+||||++.|+|.+|||+||||||||+|+.|+|| +|.++++|+.++.+-++.
T Consensus      1266 ~E~~~~~~~a~~~~n~c~~aF~~G~lK~rdl~G~II~sQ~A~~d~s~dE~~~~~s~~~ 1323 (1335)
T KOG4712|consen 1266 LELLVCRVKAMLTLNNCREAFWLGNLKNRDLQGEIIKSQNATADESEDEMSSQASKSK 1323 (1335)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHhccccccccccchhhccccccccchhHHHHhhccCc
Confidence            478899999999999999999999999999999999999 889999999999984433

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	69
3s4w_B	1323	Protein FACD2, fanconi anemia group D2 protein hom	1e-14

>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus} Length = 1323

 Score = 65.7 bits (159), Expect = 1e-14
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 1    MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQAYVDDLSNNVEED 52
            +E  + RVKA+L   +    FW+G LK++DL G+ + SQ      SN  + +
Sbjct: 1270 LELLVCRVKAMLVLNNCREAFWLGTLKNRDLQGEEIISQDPSSSESNAEDSE 1321

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	69
3s4w_B	1323	Protein FACD2, fanconi anemia group D2 protein hom	99.86

>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}

Probab=99.86  E-value=7.5e-24  Score=179.86  Aligned_cols=50  Identities=36%  Similarity=0.571  Sum_probs=29.5

Q ss_pred             CchhhhhhHHHHhhCCCcceeeecccccCCCCCcEeeeccccCCCCCcch
Q 036513            1 MERFLFRVKALLHTKSSGCTFWMGNLKHKDLMGQVVSSQAYVDDLSNNVE   50 (69)
Q Consensus         1 LE~fvfrVKalL~~n~c~~AFwmGNLKnkDL~G~~I~SQ~~~~d~~d~~e   50 (69)
                      ||+|||||||||++|+|++||||||||||||+|++|+||.|.+.+++++|
T Consensus      1270 lE~lv~rVKamL~~N~C~~AFw~GnLKnrdL~GeeI~Sq~~~~~~~~~~~ 1319 (1323)
T 3s4w_B         1270 LELLVCRVKAMLVLNNCREAFWLGTLKNRDLQGEEIISQDPSSSESNAED 1319 (1323)
T ss_dssp             HHHHHHHHHHHHCSSCCHHHHHHHHHTSCC--------------------
T ss_pred             HHHHHHHHHHHHHHCChhhhhhhcccccCCCCCceeecCCCCCCCCcccc
Confidence            69999999999999999999999999999999999999996554444443

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00