Citrus Sinensis ID: 036518

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
Protein Sequence
MAEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALYGDPNNRNPMSIMDNPSKVTKESWKFKMVERKSLDSTYDALSP
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHccccccEEcccccccHHHHHHHHHHHHHccEEEEEEccccHHHHHHHHHHHHHHHccEEEEEEcccEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHcHHcccccccccccccHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHHcccEEEEEccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHccccccccccccccEEcccccccccccccccc
Coil and Loop (DISEMBL)
MAEALLFHNLRKASALNKFLSLRLkryevpkvqgpvvkpheltgeeRFYFKKMAQKrsnyvpigrrgvFGGVILNMHMHWKKHETVkvfckpskpgqiHEFAEEIARlsggipiqiigddtvifyrgknyvqpeimspidtlSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALygdpnnrnpmsimdnpskvtkESWKFKMVERksldstydalsp
Flexible Loop (DISEMBL)
MAEALLFHNLRKASALNKFLSLRLKryevpkvqgpvvkpheltgeeRFYFKKMaqkrsnyvpigrRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGKNyvqpeimspidtLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALygdpnnrnpmsiMDNPSKVTKESWKFKmverksldstydalsp
Low Complexity Region (SEG)
MAEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALYGDPNNRNPMSIMDNPSKVTKESWKFKMVERKSLDSTYDALSP
Disordered region (IsUnstruct)
****LLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPI*******************SVRRFIAMAEKELELYYRHIALYG*****************************************
Disordered Region (DISOPRED)
****LLF*************************************EERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSP*DTLS***************************L****************************************************
Disordered Region (DISEMBL)
MAEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALYGDPNNRNPMSIMDNPSKVTKESWKFKMVERKS**********
Disordered Region (DISPRO)
MAEALLFHNLRKASALNKFLSLRLKRYEV******V**PHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALYGD****************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALYGDPNNRNPMSIMDNPSKVTKESWKFKMVERKSLDSTYDALSP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	223	2.2.26 [Sep-21-2011]
Q67XL4	444	Uncharacterized CRM domai	no	no	0.829	0.416	0.459	2e-39
Q6YYA3	725	Chloroplastic group IIA i	no	no	0.614	0.188	0.371	1e-16
Q9FYT6	715	Chloroplastic group IIA i	N/A	no	0.582	0.181	0.368	5e-16
Q9LF10	720	Chloroplastic group IIA i	no	no	0.582	0.180	0.338	4e-12
Q5VMQ5	701	CRS2-associated factor 1,	no	no	0.488	0.155	0.276	0.0003
Q657G7	607	CRS2-associated factor 2,	no	no	0.300	0.110	0.323	0.0007
Q6Z4U2	428	CRS2-associated factor 1,	no	no	0.394	0.205	0.285	0.0008

>sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2 SV=1

 Score =  162 bits (409), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 86/187 (45%), Positives = 117/187 (62%), Gaps = 2/187 (1%)

Query: 2   AEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYV 61
           +E  + + LRKA    + L   +K+ E  +       P  LT EE FY+ KM  K  NYV
Sbjct: 137 SEEKILNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYV 196

Query: 62  PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
           P+GRRG++ GVILNMH+HWKKH+T++V  K   P ++ E A E+ARL+GGI + +   +T
Sbjct: 197 PVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNT 256

Query: 122 VIFYRGKNYVQP--EIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIA 179
           +I YRGKNYVQP  EIMSP  TL +KKAL+KSK   +L +VR++I   E+EL+L      
Sbjct: 257 IIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQAE 316

Query: 180 LYGDPNN 186
              D  N
Sbjct: 317 TKRDYTN 323

Arabidopsis thaliana (taxid: 3702)

>sp|Q6YYA3|CRS1_ORYSJ Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0360100 PE=2 SV=1

 Score = 86.7 bits (213), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/140 (37%), Positives = 77/140 (55%), Gaps = 3/140 (2%)

Query: 42  LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
           LT EER  F+K+  K   +V +GRRGVF GVI  +H HWK  E VKV  K ++  QI   
Sbjct: 566 LTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYT 625

Query: 102 AEEIARLSGGIPIQI---IGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
           +  +   +GG  I I        +I YRGKNY +P   +P + L+K++AL++S   Q   
Sbjct: 626 SMMLEVETGGTLIAIERFTTSHAIILYRGKNYRRPTKSAPSNLLTKREALQRSIEVQRRG 685

Query: 159 SVRRFIAMAEKELELYYRHI 178
           S++ F    +K ++   R +
Sbjct: 686 SMKYFAQERKKSIDELKREL 705

Required for the splicing of group IIA introns in chloroplasts, by regulating the intron folding. Forms splicing particles with RNA. Also involved in chloroplast protein translation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FYT6|CRS1_MAIZE Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1

 Score = 84.3 bits (207), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 75/133 (56%), Gaps = 3/133 (2%)

Query: 42  LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
           LT EE+  F+++ +K    V +GRRG+F GVI  +H HWK  E VKV  K ++  QI   
Sbjct: 564 LTEEEKIMFRRIGRKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQTRQIMYA 623

Query: 102 AEEIARLSGGIPI---QIIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLE 158
           A  +   +GGI I   ++     +I YRGKNY +P   S  + L+K++AL +S   Q   
Sbjct: 624 ASLLEVETGGILIAVEKLTTSHAIILYRGKNYRRPAKSSFSNLLTKREALRRSIEVQRRG 683

Query: 159 SVRRFIAMAEKEL 171
           S++ F+   +K +
Sbjct: 684 SMKYFVRERQKSI 696

Required for the splicing of group IIA introns in chloroplasts, and especially for atpF, by regulating the intron folding. Forms splicing particles with RNA. Also involved in chloroplast protein translation.

Zea mays (taxid: 4577)

>sp|Q9LF10|CRS1_ARATH Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=2 SV=2

 Score = 71.6 bits (174), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 75/136 (55%), Gaps = 6/136 (4%)

Query: 42  LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
           LT EER   +++  K ++ + +GRRGVF GV+  +H HWK  E  KV        ++   
Sbjct: 572 LTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSRVVYT 631

Query: 102 AEEIARLSGGIPIQIIG---DDTVIFYRGKNYVQP--EIMSPIDTLSKKKALEKSKYEQS 156
           A+ +   S G+ I I        ++ YRGKNY +P  ++M+  + L+K+KAL++S   Q 
Sbjct: 632 AKALETESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQ-NLLTKRKALQRSVVMQR 690

Query: 157 LESVRRFIAMAEKELE 172
           L S++ F    E+ +E
Sbjct: 691 LGSLKFFAYQRERAIE 706

Required for the splicing of group IIA introns in chloroplasts, by regulating the intron folding. Forms splicing particles with RNA. May also be involved in chloroplast protein translation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5VMQ5|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0495900 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 3/112 (2%)

Query: 19  FLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHM 78
           FL+    RY+    +  + +P  LT EE     K   K    + IGR G+   ++ N+H 
Sbjct: 164 FLAGTEPRYQAASREEVLGEP--LTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHS 221

Query: 79  HWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGKNY 130
           HWK+    K+ CK      +    +++    GG  I   G   +  +RG+NY
Sbjct: 222 HWKRKRVCKIKCKGVCTVDMDNVCQQLEEKVGGKVIHHQG-GVIFLFRGRNY 272

Required for the splicing of group IIB introns in chloroplasts. Forms splicing particles with CRS2. Interacts with RNA and confers intron specificity of the splicing particles.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q657G7|CAF2P_ORYSJ CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0323300 PE=2 SV=1

 Score = 44.3 bits (103), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 63  IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
           IGR G+   ++  +H HW++ E  KV C+      +      +   SGG  I  +G   V
Sbjct: 251 IGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKVIHRVG-GVV 309

Query: 123 IFYRGKNY 130
             YRG+NY
Sbjct: 310 FLYRGRNY 317

Required for the splicing of group IIB introns in chloroplasts. Forms splicing particles with CRS2. Interacts with RNA and confers intron specificity of the splicing particles.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6Z4U2|CAF1M_ORYSJ CRS2-associated factor 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0174900 PE=2 SV=1

 Score = 43.9 bits (102), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 42  LTGEERFYFKKMAQKRSN--YVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIH 99
           LT  ER +     QK      + +GR G+   ++ ++H HWK  E V+V C       + 
Sbjct: 157 LTPAERAFLVSKCQKSRTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQ 216

Query: 100 EFAEEIARLSGGIPIQIIGDDTVIFYRGKNY 130
               ++   +GG+ I   G   +I YRG++Y
Sbjct: 217 NVCHQLEDKTGGLIIHRHG-GQLILYRGRHY 246

May be involved for the splicing of group IIB introns in mitochondrions.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
359478175	711	PREDICTED: uncharacterized protein LOC10	0.986	0.309	0.760	6e-95
297743805	332	unnamed protein product [Vitis vinifera]	0.986	0.662	0.760	4e-94
147820521	375	hypothetical protein VITISV_012474 [Viti	0.986	0.586	0.760	2e-93
449437795	431	PREDICTED: uncharacterized protein LOC10	0.843	0.436	0.840	4e-92
356544514	426	PREDICTED: uncharacterized protein LOC10	0.905	0.474	0.787	5e-92
255585329	412	conserved hypothetical protein [Ricinus	0.923	0.5	0.766	9e-91
224095670	266	predicted protein [Populus trichocarpa]	0.829	0.695	0.822	2e-84
15226402	372	RNA-binding CRS1 / YhbY (CRM) domain pro	0.869	0.521	0.757	2e-84
297822421	345	hypothetical protein ARALYDRAFT_901658 [	0.869	0.562	0.747	2e-83
242055631	405	hypothetical protein SORBIDRAFT_03g04642	0.829	0.456	0.745	2e-79

>gi|359478175|ref|XP_002266278.2| PREDICTED: uncharacterized protein LOC100250974 [Vitis vinifera]

 Score =  352 bits (903), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 168/221 (76%), Positives = 186/221 (84%), Gaps = 1/221 (0%)

Query: 2   AEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYV 61
           AE  +   L KA      L  RLKRYEVPK+QGP+V+P  LTGEERFY KKMAQKRSNYV
Sbjct: 414 AEERIKFKLEKARIKEALLIERLKRYEVPKLQGPIVQPVNLTGEERFYMKKMAQKRSNYV 473

Query: 62  PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
           P+GRRGVFGGVILNMHMHWKKHETVKV CKP KPGQ+HE+A EIARLSGG PIQIIGDDT
Sbjct: 474 PVGRRGVFGGVILNMHMHWKKHETVKVICKPCKPGQVHEYANEIARLSGGTPIQIIGDDT 533

Query: 122 VIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALY 181
           +IFYRGKNYVQPE+MSPIDTLSKK+ALEKSKYEQSLESVRRFIA+AEKELELYYRHIALY
Sbjct: 534 IIFYRGKNYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHIALY 593

Query: 182 GDPNNRNPMSIMDNPSKVTKESWKFKMVERKSLDSTYDALS 222
           GDP++RNP SI D+PSK T ES K +M  R+  D + +  S
Sbjct: 594 GDPSDRNPTSIFDSPSKYTNESGK-EMPRRQDFDVSTNGFS 633

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743805|emb|CBI36688.3| unnamed protein product [Vitis vinifera]

 Score =  349 bits (896), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 168/221 (76%), Positives = 186/221 (84%), Gaps = 1/221 (0%)

Query: 2   AEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYV 61
           AE  +   L KA      L  RLKRYEVPK+QGP+V+P  LTGEERFY KKMAQKRSNYV
Sbjct: 35  AEERIKFKLEKARIKEALLIERLKRYEVPKLQGPIVQPVNLTGEERFYMKKMAQKRSNYV 94

Query: 62  PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
           P+GRRGVFGGVILNMHMHWKKHETVKV CKP KPGQ+HE+A EIARLSGG PIQIIGDDT
Sbjct: 95  PVGRRGVFGGVILNMHMHWKKHETVKVICKPCKPGQVHEYANEIARLSGGTPIQIIGDDT 154

Query: 122 VIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALY 181
           +IFYRGKNYVQPE+MSPIDTLSKK+ALEKSKYEQSLESVRRFIA+AEKELELYYRHIALY
Sbjct: 155 IIFYRGKNYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHIALY 214

Query: 182 GDPNNRNPMSIMDNPSKVTKESWKFKMVERKSLDSTYDALS 222
           GDP++RNP SI D+PSK T ES K +M  R+  D + +  S
Sbjct: 215 GDPSDRNPTSIFDSPSKYTNESGK-EMPRRQDFDVSTNGFS 254

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147820521|emb|CAN67658.1| hypothetical protein VITISV_012474 [Vitis vinifera]

 Score =  347 bits (891), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 168/221 (76%), Positives = 185/221 (83%), Gaps = 1/221 (0%)

Query: 2   AEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYV 61
           AE  +   L KA      L  RLKRYEVPK+QGP+V+P  LTGEERFY KKMAQKRSNYV
Sbjct: 78  AEERIKFKLEKARIKEALLIERLKRYEVPKLQGPIVQPVNLTGEERFYMKKMAQKRSNYV 137

Query: 62  PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
           P+GRRGVFGGVILNMHMHWKKHETVKV CKP KPGQ+HE+A EIARLSGG PIQIIGDDT
Sbjct: 138 PVGRRGVFGGVILNMHMHWKKHETVKVICKPCKPGQVHEYANEIARLSGGTPIQIIGDDT 197

Query: 122 VIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALY 181
           +IFYRGKNYVQPE MSPIDTLSKK+ALEKSKYEQSLESVRRFIA+AEKELELYYRHIALY
Sbjct: 198 IIFYRGKNYVQPEXMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHIALY 257

Query: 182 GDPNNRNPMSIMDNPSKVTKESWKFKMVERKSLDSTYDALS 222
           GDP++RNP SI D+PSK T ES K +M  R+  D + +  S
Sbjct: 258 GDPSDRNPTSIFDSPSKYTNESGK-EMPRRQDFDVSTNGFS 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437795|ref|XP_004136676.1| PREDICTED: uncharacterized protein LOC101208777 [Cucumis sativus] gi|449494725|ref|XP_004159629.1| PREDICTED: uncharacterized LOC101208777 [Cucumis sativus]

 Score =  343 bits (879), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 158/188 (84%), Positives = 174/188 (92%)

Query: 10  LRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVF 69
           L  A      L  RL+RYEVPKVQGP+VKPH+LTGEERFY KKM QKRSNYVPIGRRGVF
Sbjct: 136 LENARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMGQKRSNYVPIGRRGVF 195

Query: 70  GGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGKN 129
           GGVILNMHMHWKKHETVKV+CKP KPGQ+HE+A+EIARLSGGIPIQIIGDDT+IFYRGK+
Sbjct: 196 GGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFYRGKD 255

Query: 130 YVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALYGDPNNRNP 189
           YVQPE+MSPIDTLSKK+ALEKSKYEQSLESVRRFIA+AEKELELYYRHIALYGDPN+RNP
Sbjct: 256 YVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHIALYGDPNDRNP 315

Query: 190 MSIMDNPS 197
           +SI++ PS
Sbjct: 316 LSILNVPS 323

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544514|ref|XP_003540695.1| PREDICTED: uncharacterized protein LOC100796393 [Glycine max]

 Score =  342 bits (878), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 159/202 (78%), Positives = 178/202 (88%)

Query: 1   MAEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNY 60
            AE  + + + KA      L  RLKRYEVPK QGPVVKP +LTGEERFY KKMAQKRSNY
Sbjct: 131 CAEERIKYKIEKARIKEALLIERLKRYEVPKAQGPVVKPDDLTGEERFYLKKMAQKRSNY 190

Query: 61  VPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDD 120
           + IGRRG+FGGV+LNMHMHWKKHETVKVFCKP KPGQ+HE+A+E+ARLSGGIP+QIIGDD
Sbjct: 191 LQIGRRGLFGGVVLNMHMHWKKHETVKVFCKPCKPGQVHEYAQELARLSGGIPLQIIGDD 250

Query: 121 TVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIAL 180
           T+IFYRGKNY QPE+MSPIDTLSKKKALEKSKYEQSLESVRRFIA+AEKELELY RH+AL
Sbjct: 251 TIIFYRGKNYEQPEVMSPIDTLSKKKALEKSKYEQSLESVRRFIAIAEKELELYCRHVAL 310

Query: 181 YGDPNNRNPMSIMDNPSKVTKE 202
           YGDPNNRNP+S+MD PS  +KE
Sbjct: 311 YGDPNNRNPLSMMDGPSGNSKE 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585329|ref|XP_002533362.1| conserved hypothetical protein [Ricinus communis] gi|223526802|gb|EEF29024.1| conserved hypothetical protein [Ricinus communis]

 Score =  338 bits (867), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 158/206 (76%), Positives = 181/206 (87%)

Query: 2   AEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYV 61
           AE  + + L +A      L  RLKRYEVPKVQGP VKPH+LTGEERF+ KKMAQK+SNYV
Sbjct: 104 AEERIKYKLERAKIKEALLVERLKRYEVPKVQGPEVKPHDLTGEERFFMKKMAQKQSNYV 163

Query: 62  PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
           P+GRRGVFGGVILNMHMHWKKHETVKV C   KPGQ+HE+A+EIARLSGGIPIQ+IGDDT
Sbjct: 164 PLGRRGVFGGVILNMHMHWKKHETVKVICNFCKPGQVHEYAQEIARLSGGIPIQVIGDDT 223

Query: 122 VIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALY 181
           +IFYRGKNYVQPE+MSPIDTLSKK+ALEKSKYEQSLESVRRFIA+AEKELELYYRHIALY
Sbjct: 224 IIFYRGKNYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHIALY 283

Query: 182 GDPNNRNPMSIMDNPSKVTKESWKFK 207
           GDPN+RN +S++D+P+   KES + +
Sbjct: 284 GDPNDRNLLSVLDSPTNDFKESGELR 309

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224095670|ref|XP_002310431.1| predicted protein [Populus trichocarpa] gi|222853334|gb|EEE90881.1| predicted protein [Populus trichocarpa]

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 153/186 (82%), Positives = 166/186 (89%), Gaps = 1/186 (0%)

Query: 10  LRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVF 69
           L +A      L  RLKRYEVPK+QGP VKPHELTGEERF+ KKMAQK+SNYVPIGRRGVF
Sbjct: 81  LERARIKEAKLVERLKRYEVPKMQGPEVKPHELTGEERFFMKKMAQKKSNYVPIGRRGVF 140

Query: 70  GGVILNMHMHWKKHETVKVFCKPS-KPGQIHEFAEEIARLSGGIPIQIIGDDTVIFYRGK 128
           GGVILNMHMHWKKHETVKV C  S KPGQ+ EFA+EIARLSGGIPIQIIGDDTVIFYRGK
Sbjct: 141 GGVILNMHMHWKKHETVKVICNSSCKPGQVQEFAQEIARLSGGIPIQIIGDDTVIFYRGK 200

Query: 129 NYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALYGDPNNRN 188
           NYVQP++MSP+DTLSKKKALEKSKYEQSLE+VR FIA+AEKELELY+RH ALYGD NNRN
Sbjct: 201 NYVQPKVMSPVDTLSKKKALEKSKYEQSLETVRHFIAIAEKELELYFRHNALYGDSNNRN 260

Query: 189 PMSIMD 194
           P SI+D
Sbjct: 261 PGSILD 266

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15226402|ref|NP_180415.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana] gi|4510396|gb|AAD21483.1| hypothetical protein [Arabidopsis thaliana] gi|44917583|gb|AAS49116.1| At2g28480 [Arabidopsis thaliana] gi|110741747|dbj|BAE98819.1| hypothetical protein [Arabidopsis thaliana] gi|330253035|gb|AEC08129.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 147/194 (75%), Positives = 168/194 (86%)

Query: 2   AEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYV 61
           AE  + + L KA      L  RLKRYEV KVQGP V+PHE+TGEERFY KKM QKRSNYV
Sbjct: 124 AEERIKYKLEKAKIKEALLIERLKRYEVAKVQGPEVRPHEITGEERFYLKKMGQKRSNYV 183

Query: 62  PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
           PIGRRGVFGGVILNMH+HWKKHETVKV C  SKPGQ+ ++AEE+A+LSGG+P+ IIGDDT
Sbjct: 184 PIGRRGVFGGVILNMHLHWKKHETVKVICNNSKPGQVQQYAEELAKLSGGVPVNIIGDDT 243

Query: 122 VIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALY 181
           +IFYRGK YVQP++MSPIDTLSKK+A EKSKYEQSLESVR FIA+AEKELELYYRH+ALY
Sbjct: 244 IIFYRGKGYVQPQVMSPIDTLSKKRAYEKSKYEQSLESVRHFIAIAEKELELYYRHVALY 303

Query: 182 GDPNNRNPMSIMDN 195
            DPNNRNP+SI+D+
Sbjct: 304 DDPNNRNPLSILDD 317

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297822421|ref|XP_002879093.1| hypothetical protein ARALYDRAFT_901658 [Arabidopsis lyrata subsp. lyrata] gi|297324932|gb|EFH55352.1| hypothetical protein ARALYDRAFT_901658 [Arabidopsis lyrata subsp. lyrata]

 Score =  313 bits (803), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 145/194 (74%), Positives = 167/194 (86%)

Query: 2   AEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYV 61
           AE  + + L KA      L  +LKRYEV KVQGP V+PHE+TGEERFY KKM QKRSNYV
Sbjct: 121 AEERIKYKLEKAKIKEALLIEKLKRYEVAKVQGPEVRPHEITGEERFYLKKMGQKRSNYV 180

Query: 62  PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
           PIGRRGVFGGVILNMH+HWKKHETVKV C  SKPGQ+ ++AEE+A+LSGG+P+ IIGDDT
Sbjct: 181 PIGRRGVFGGVILNMHLHWKKHETVKVICNNSKPGQVQQYAEELAKLSGGVPVNIIGDDT 240

Query: 122 VIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALY 181
           +IFYRGK YVQP++MSPIDTLSKK+A EKSKYEQSLESVR  IA+AEKELELYYRH+ALY
Sbjct: 241 IIFYRGKGYVQPQVMSPIDTLSKKRAYEKSKYEQSLESVRHSIAIAEKELELYYRHVALY 300

Query: 182 GDPNNRNPMSIMDN 195
            DPNNRNP+SI+D+
Sbjct: 301 DDPNNRNPLSILDD 314

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242055631|ref|XP_002456961.1| hypothetical protein SORBIDRAFT_03g046420 [Sorghum bicolor] gi|241928936|gb|EES02081.1| hypothetical protein SORBIDRAFT_03g046420 [Sorghum bicolor]

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 138/185 (74%), Positives = 162/185 (87%)

Query: 3   EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
           EA L + + KA      L  +LK+YEV K QGP+ KP +L+GEERFY KK++QK+SNYVP
Sbjct: 134 EARLKYKIEKAKLKEVRLVEKLKKYEVAKAQGPMAKPDDLSGEERFYLKKVSQKKSNYVP 193

Query: 63  IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
           +GRRGVFGGVILNMH+HWKKHETVKV CKP KPGQI E+A EIARLSGGIP+ IIGDDT+
Sbjct: 194 VGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYANEIARLSGGIPVNIIGDDTI 253

Query: 123 IFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALYG 182
           +FYRGKNYVQPE+MSPIDTLSKKKALEKSKYEQSLE+VRRFIA++EKELELYYRH+ALYG
Sbjct: 254 VFYRGKNYVQPEVMSPIDTLSKKKALEKSKYEQSLETVRRFIAISEKELELYYRHVALYG 313

Query: 183 DPNNR 187
           +P ++
Sbjct: 314 NPQSQ 318

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
TAIR|locus:2056558	372	AT2G28480 [Arabidopsis thalian	0.883	0.529	0.752	4.7e-80
TAIR|locus:2123276	343	AT4G13070 [Arabidopsis thalian	0.793	0.516	0.561	2.1e-52
TAIR|locus:2094438	444	LOH1 "LAG One Homologue 1" [Ar	0.914	0.459	0.438	2.9e-39
TAIR|locus:2091458	491	AT3G27550 [Arabidopsis thalian	0.757	0.344	0.473	4.9e-37
TAIR|locus:2096662	1011	CFM2 "CRM family member 2" [Ar	0.735	0.162	0.327	2.1e-20
TAIR|locus:2094997	848	EMB1865 "embryo defective 1865	0.739	0.194	0.355	1.6e-19
TAIR|locus:2094558	881	CFM3A "CRM family member 3A" [	0.605	0.153	0.366	1.8e-17
TAIR|locus:2181372	720	CRS1 "ortholog of maize chloro	0.582	0.180	0.338	1.6e-13

TAIR|locus:2056558 AT2G28480 [Arabidopsis thaliana (taxid:3702)]

 Score = 804 (288.1 bits), Expect = 4.7e-80, P = 4.7e-80
 Identities = 149/198 (75%), Positives = 171/198 (86%)

Query:     2 AEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYV 61
             AE  + + L KA      L  RLKRYEV KVQGP V+PHE+TGEERFY KKM QKRSNYV
Sbjct:   124 AEERIKYKLEKAKIKEALLIERLKRYEVAKVQGPEVRPHEITGEERFYLKKMGQKRSNYV 183

Query:    62 PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
             PIGRRGVFGGVILNMH+HWKKHETVKV C  SKPGQ+ ++AEE+A+LSGG+P+ IIGDDT
Sbjct:   184 PIGRRGVFGGVILNMHLHWKKHETVKVICNNSKPGQVQQYAEELAKLSGGVPVNIIGDDT 243

Query:   122 VIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIALY 181
             +IFYRGK YVQP++MSPIDTLSKK+A EKSKYEQSLESVR FIA+AEKELELYYRH+ALY
Sbjct:   244 IIFYRGKGYVQPQVMSPIDTLSKKRAYEKSKYEQSLESVRHFIAIAEKELELYYRHVALY 303

Query:   182 GDPNNRNPMSIMDN-PSK 198
              DPNNRNP+SI+D+ PS+
Sbjct:   304 DDPNNRNPLSILDDSPSE 321

GO:0003723 "RNA binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2123276 AT4G13070 [Arabidopsis thaliana (taxid:3702)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 100/178 (56%), Positives = 133/178 (74%)

Query:     3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
             E  + + L KA    ++L  +L++Y+VPK       P  LT EE+ Y K+  +KR N+V 
Sbjct:   143 EVRIRYKLEKAKRKEEWLIEKLRKYDVPKSPAEPYDPESLTEEEQHYLKRTGEKRKNFVL 202

Query:    63 IGRRGVFGGVILNMHMHWKKHETVKVFCKP-SKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
             +GRRGVFGGV+LN+H+HWKKHETVKV CKP +KPGQ+HE+AEE+ARLS GI I +  ++T
Sbjct:   203 VGRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPGQVHEYAEELARLSKGIVIDVKPNNT 262

Query:   122 VIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIA 179
             ++ YRGKNYV+PE+MSP+DTLSK KALEK +YEQSLE    FI   EKELE Y++++A
Sbjct:   263 IVLYRGKNYVRPEVMSPVDTLSKDKALEKYRYEQSLEHTSEFIEKLEKELEEYHKYVA 320

GO:0003723 "RNA binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2094438 LOH1 "LAG One Homologue 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 93/212 (43%), Positives = 129/212 (60%)

Query:     2 AEALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYV 61
             +E  + + LRKA    + L   +K+ E  +       P  LT EE FY+ KM  K  NYV
Sbjct:   137 SEEKILNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYV 196

Query:    62 PIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT 121
             P+GRRG++ GVILNMH+HWKKH+T++V  K   P ++ E A E+ARL+GGI + +   +T
Sbjct:   197 PVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNT 256

Query:   122 VIFYRGKNYVQP--EIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHIA 179
             +I YRGKNYVQP  EIMSP  TL +KKAL+KSK   +L +VR++I   E+EL+L      
Sbjct:   257 IIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQAE 316

Query:   180 LYGDPNNRNPMSIMDNPSKVTKESWKFKMVER 211
                D  N   + + DN  +   E  K K++ER
Sbjct:   317 TKRDYTN---VKVDDNQER--SEELK-KIIER 342

GO:0003723 "RNA binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0042761 "very long-chain fatty acid biosynthetic process" evidence=IGI

GO:0050291 "sphingosine N-acyltransferase activity" evidence=IGI

TAIR|locus:2091458 AT3G27550 [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 80/169 (47%), Positives = 112/169 (66%)

Query:     3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVP 62
             E  L +NL++A      L  +LK+Y++P++  PV  P   T E+   FKK+  K  NYVP
Sbjct:    53 EERLIYNLKRAKKKVALLLQKLKKYDLPELPSPVHDPELFTSEQVQAFKKIGFKNKNYVP 112

Query:    63 IGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDTV 122
             +G RGVFGGV+ NMHMHWK HETV+V C      +I E A  IARLSGG+ I I    T+
Sbjct:   113 VGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMASMIARLSGGVVINIHNVKTI 172

Query:   123 IFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKEL 171
             I +RG+NY QP+ + P++TL+K+KAL K+++EQ+LES +  I   E++L
Sbjct:   173 IMFRGRNYRQPKNLIPVNTLTKRKALFKARFEQALESQKLNIKKTEQQL 221

GO:0003723 "RNA binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2096662 CFM2 "CRM family member 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
 Identities = 56/171 (32%), Positives = 94/171 (54%)

Query:    11 RKASALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFG 70
             +KA+A  K L+  L+  E P++    +    +T +E++  +K+  K   ++ +GRRGVF 
Sbjct:   552 KKANA-EKVLA-DLENRESPQLSD--IDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVFD 607

Query:    71 GVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGI--PIQIIGDD-TVIFYRG 127
             G I NMH+HWK  E VK+ C        H+ AE +   SGGI   ++++     +I YRG
Sbjct:   608 GTIENMHLHWKYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVYRG 667

Query:   128 KNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYRHI 178
             KNY +P+ + P   LSK++AL++S   Q  +S++  +      +E   R +
Sbjct:   668 KNYERPQCLRPQTLLSKREALKRSVEAQRRKSLKLHVLKLSNNIEELNRQL 718

GO:0003723 "RNA binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;RCA

GO:0000372 "Group I intron splicing" evidence=IMP

GO:0000373 "Group II intron splicing" evidence=IMP

TAIR|locus:2094997 EMB1865 "embryo defective 1865" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.6e-19, P = 1.6e-19
 Identities = 60/169 (35%), Positives = 90/169 (53%)

Query:     8 HNLRKASALNKFLSLRLKRYEVPKV-QGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRR 66
             H L  A +  +     L + E   +  GP      ++ EER  F+K+  K   Y+PIG R
Sbjct:   618 HKLNLAQSKFQRAEKLLSKIEASMIPNGPDYDQEVISEEERAMFRKVGLKMKAYLPIGIR 677

Query:    67 GVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQI--IGDD-TVI 123
             GVF GVI NMH+HWK  E VK+  K      + E A  +   SGG+ + I  +     +I
Sbjct:   678 GVFDGVIENMHLHWKHRELVKLISKQKNQAFVEETARLLEYESGGVLVAIEKVPKGFALI 737

Query:   124 FYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELE 172
             +YRGKNY +P  + P + L+K KAL++S   Q  E++ + I+  E+ +E
Sbjct:   738 YYRGKNYRRPISLRPRNLLTKAKALKRSIAMQRHEALSQHISELERTIE 786

GO:0003723 "RNA binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

TAIR|locus:2094558 CFM3A "CRM family member 3A" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 1.8e-17, P = 1.8e-17
 Identities = 51/139 (36%), Positives = 78/139 (56%)

Query:    39 PHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQI 98
             P  +T EERF F+K+  K   ++ +GRRGVF G + NMH+HWK  E VK+  K      +
Sbjct:   635 PESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGV 694

Query:    99 HEFAEEIARLSGGIPIQI---IGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQ 155
              + A  +   SGGI + I        +I YRG++Y +P ++ P + L+K+KAL +S   Q
Sbjct:   695 KKVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKNLLTKRKALARSIELQ 754

Query:   156 SLESVRRFIA-MAEKELEL 173
               E + + I+ M  K  +L
Sbjct:   755 RREGLLKHISTMQAKAKQL 773

GO:0003723 "RNA binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0000373 "Group II intron splicing" evidence=IMP

GO:0048316 "seed development" evidence=IGI

TAIR|locus:2181372 CRS1 "ortholog of maize chloroplast splicing factor CRS1" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 46/136 (33%), Positives = 77/136 (56%)

Query:    42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
             LT EER   +++  K ++ + +GRRGVF GV+  +H HWK  E  KV        ++   
Sbjct:   572 LTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSRVVYT 631

Query:   102 AEEIARLSGGIPIQI--IGDD-TVIFYRGKNYVQP--EIMSPIDTLSKKKALEKSKYEQS 156
             A+ +   S G+ I I  + +   ++ YRGKNY +P  ++M+  + L+K+KAL++S   Q 
Sbjct:   632 AKALETESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQ-NLLTKRKALQRSVVMQR 690

Query:   157 LESVRRFIAMAEKELE 172
             L S++ F    E+ +E
Sbjct:   691 LGSLKFFAYQRERAIE 706


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.135   0.394    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      223       223   0.00098  112 3  11 22  0.39    33
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  176 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.46u 0.14s 21.60t   Elapsed:  00:00:01
  Total cpu time:  21.46u 0.14s 21.60t   Elapsed:  00:00:01
  Start:  Thu May  9 17:01:24 2013   End:  Thu May  9 17:01:25 2013

GO:0003723 "RNA binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0000373 "Group II intron splicing" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00001969001 SubName- Full=Chromosome chr5 scaffold_124, whole genome shotgun sequence; (332 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	223
smart01103	84	smart01103, CRS1_YhbY, Escherichia coli YhbY is as	3e-26
pfam01985	84	pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain	2e-25
COG1534	97	COG1534, COG1534, Predicted RNA-binding protein co	4e-06

>gnl|CDD|198171 smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly

 Score = 96.8 bits (242), Expect = 3e-26
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 42  LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
           LTG+++ Y + +A      V IG+ G+  GV+  +    +KHE +KV    +      E 
Sbjct: 1   LTGKQKRYLRSLAHHLKPVVQIGKNGLTEGVLEEIDEALEKHELIKVKVLGNDREDRKEI 60

Query: 102 AEEIARLSGGIPIQIIGDDTVIFYR 126
           AEE+A  +G   +Q+IG  T++ YR
Sbjct: 61  AEELAEETGAELVQVIG-KTIVLYR 84

GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome. Length = 84

>gnl|CDD|190184 pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain

 Score = 94.5 bits (236), Expect = 2e-25
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 42  LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
           LTG++R Y + +A      V IG+ G+  GV+  +    +KHE +KV    +      E 
Sbjct: 1   LTGKQRRYLRSLAHHLKPVVQIGKNGLTEGVVEEIDEALEKHELIKVKVLGNDREDRKEI 60

Query: 102 AEEIARLSGGIPIQIIGDDTVIFYR 126
           AEE+A  +G   +Q+IG  T++ YR
Sbjct: 61  AEELAEKTGAELVQVIG-RTIVLYR 84

Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome. Length = 84

>gnl|CDD|224451 COG1534, COG1534, Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis]

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 24/91 (26%), Positives = 42/91 (46%)

Query: 42  LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
           LTG+++ + +  A      V IG+ G+  GVI  +    +  E +KV    +      E 
Sbjct: 2   LTGKQKRFLRSKAHHLKPIVQIGKNGLTEGVIKEIDRALEARELIKVKVLQNAREDKKEI 61

Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQ 132
           AE +A  +G   +Q+IG   V++   K   +
Sbjct: 62  AEALAEETGAELVQVIGKTLVLYRESKEKRK 92

Length = 97

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	223
PRK10343	97	RNA-binding protein YhbY; Provisional	99.96
TIGR00253	95	RNA_bind_YhbY putative RNA-binding protein, YhbY f	99.96
PF01985	84	CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR	99.95
COG1534	97	Predicted RNA-binding protein containing KH domain	99.95
KOG1990	564	consensus Poly(A)-specific exoribonuclease PARN [R	99.93
KOG1990	564	consensus Poly(A)-specific exoribonuclease PARN [R	97.99

>PRK10343 RNA-binding protein YhbY; Provisional

Probab=99.96  E-value=2.4e-29  Score=196.28  Aligned_cols=96  Identities=24%  Similarity=0.399  Sum_probs=87.7

Q ss_pred             CCCCHHHHHHHHHHhhcCCCeeeeCCCCCCHHHHHHHHHHHHhCCeeEEEecCCChhhHHHHHHHHHHHhCCeeEEEECC
Q 036518           40 HELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGD  119 (223)
Q Consensus        40 e~LT~kERk~LRk~Ah~LKpvV~IGK~GVTdgVIeeI~~~Lk~hELVKVkv~~~~~~d~keiAeeLa~~sGg~LVqvIG~  119 (223)
                      ++||++||++||++||+|+|+|+||++||||+|+++++.+|++||||||++.+++++++++++++||+.+||++||+||+
T Consensus         1 m~Lt~kqr~~LR~~ah~l~Pvv~IGk~Glt~~vi~ei~~aL~~hELIKvkv~~~~~~~~~e~~~~i~~~~~ae~Vq~IG~   80 (97)
T PRK10343          1 MNLSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKTLIVEAIVRETGACNVQVIGK   80 (97)
T ss_pred             CCCCHHHHHHHHHhcCCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEecCCChhHHHHHHHHHHHHHCCEEEeeeCc
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEecCCCCCCCCCCCC
Q 036518          120 DTVIFYRGKNYVQPEIMSP  138 (223)
Q Consensus       120 ~aII~YRgKny~~P~~l~P  138 (223)
                      + +++||...  .|.+..|
T Consensus        81 ~-~vlYR~~~--~~~i~lp   96 (97)
T PRK10343         81 T-LVLYRPTK--ERKISLP   96 (97)
T ss_pred             E-EEEEecCC--CccCCCC
Confidence            5 55688753  3545444

>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family

Probab=99.96  E-value=3.5e-29  Score=194.54  Aligned_cols=86  Identities=24%  Similarity=0.424  Sum_probs=82.6

Q ss_pred             CCHHHHHHHHHHhhcCCCeeeeCCCCCCHHHHHHHHHHHHhCCeeEEEecCCChhhHHHHHHHHHHHhCCeeEEEECCeE
Q 036518           42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT  121 (223)
Q Consensus        42 LT~kERk~LRk~Ah~LKpvV~IGK~GVTdgVIeeI~~~Lk~hELVKVkv~~~~~~d~keiAeeLa~~sGg~LVqvIG~~a  121 (223)
                      ||++||++||++||+|+|+|+|||+||||+|+++++++|++||||||++.++++++++++|++||+.|||++||+||++ 
T Consensus         1 Lt~kqr~~Lr~~ah~l~p~v~IGK~Glt~~vi~ei~~aL~~hELIKVkvl~~~~~~~~e~a~~i~~~~~a~~Vq~iG~~-   79 (95)
T TIGR00253         1 LTGKQKRHLRGKAHHLKPVVLVGKNGLTEGVIKEIEQALEHRELIKVKVATEDREDKTLIAEALVKETGACNVQVIGKT-   79 (95)
T ss_pred             CCHHHHHHHHHHhCCCCCeEEECCCCCCHHHHHHHHHHHHhCCcEEEEecCCChhHHHHHHHHHHHHHCCEEEEEEccE-
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999999999995 


Q ss_pred             EEEecCC
Q 036518          122 VIFYRGK  128 (223)
Q Consensus       122 II~YRgK  128 (223)
                      +++||+.
T Consensus        80 ~vlYR~~   86 (95)
T TIGR00253        80 IVLYRPT   86 (95)
T ss_pred             EEEEecC
Confidence            5568874

A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.

>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain

Probab=99.95  E-value=2.1e-28  Score=184.69  Aligned_cols=84  Identities=35%  Similarity=0.531  Sum_probs=73.8

Q ss_pred             CCHHHHHHHHHHhhcCCCeeeeCCCCCCHHHHHHHHHHHHhCCeeEEEecCCChhhHHHHHHHHHHHhCCeeEEEECCeE
Q 036518           42 LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDDT  121 (223)
Q Consensus        42 LT~kERk~LRk~Ah~LKpvV~IGK~GVTdgVIeeI~~~Lk~hELVKVkv~~~~~~d~keiAeeLa~~sGg~LVqvIG~~a  121 (223)
                      ||++|+++||+.||+|+|+|+|||+||||+|+++|+++|+.||||||+|.+++.++++++|+.||+.|||++|+++|++ 
T Consensus         1 Lt~ke~~~Lr~~a~~l~p~v~IGk~Glt~~vi~~i~~~l~~~eLvKVk~~~~~~~~~~~~~~~l~~~t~~~~V~~iG~~-   79 (84)
T PF01985_consen    1 LTSKERKFLRKLAHHLKPVVQIGKNGLTDGVIEEIDDALEKHELVKVKVLGNCREDRKEIAEQLAEKTGAEVVQVIGRT-   79 (84)
T ss_dssp             --HHHHHHHHHHHTTC--SEEE-TTSS-HHHHHHHHHHHHHHSEEEEEETT--HHHHHHHHHHHHHHHTEEEEEEETTE-
T ss_pred             CCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHhCCeeEEEEccCCHHHHHHHHHHHHHHhCCEEEEEECCE-
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999999999995 


Q ss_pred             EEEec
Q 036518          122 VIFYR  126 (223)
Q Consensus       122 II~YR  126 (223)
                      +|+||
T Consensus        80 ~vlyR   84 (84)
T PF01985_consen   80 IVLYR   84 (84)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            56687

The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.

>COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=6.1e-28  Score=188.50  Aligned_cols=97  Identities=27%  Similarity=0.431  Sum_probs=89.9

Q ss_pred             CCCHHHHHHHHHHhhcCCCeeeeCCCCCCHHHHHHHHHHHHhCCeeEEEecCCChhhHHHHHHHHHHHhCCeeEEEECCe
Q 036518           41 ELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDD  120 (223)
Q Consensus        41 ~LT~kERk~LRk~Ah~LKpvV~IGK~GVTdgVIeeI~~~Lk~hELVKVkv~~~~~~d~keiAeeLa~~sGg~LVqvIG~~  120 (223)
                      +||++|+++||+.||+++|+|+||++|||++|+.+|+++|++||||||++.+++.++++++|+.||+.+||.+||+||++
T Consensus         1 ~Lt~kq~~~Lrs~Ah~l~piv~IGk~Glte~vi~Ei~~aL~~reLIKVkvl~~~~edr~eia~~l~~~~~a~lVqviG~~   80 (97)
T COG1534           1 MLTGKQKRFLRSKAHHLKPIVQIGKNGLTEGVIKEIDRALEARELIKVKVLQNAREDKKEIAEALAEETGAELVQVIGKT   80 (97)
T ss_pred             CCcHHHHHHHHHhhccCCceEEecCCccCHHHHHHHHHHHHhCCcEEEEeeccchhhHHHHHHHHHHHhCCEEeeeeeeE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999995


Q ss_pred             EEEEecCCCCCCCCCCCCc
Q 036518          121 TVIFYRGKNYVQPEIMSPI  139 (223)
Q Consensus       121 aII~YRgKny~~P~~l~P~  139 (223)
                       +|+|| .+..++.+..|.
T Consensus        81 -~vlyr-~~~e~~~i~l~~   97 (97)
T COG1534          81 -LVLYR-ESKEKRKISLPR   97 (97)
T ss_pred             -EEEEe-cCcccccccCCC
Confidence             55688 566677776663

>KOG1990 consensus Poly(A)-specific exoribonuclease PARN [Replication, recombination and repair]

Probab=99.93  E-value=7.4e-27  Score=226.82  Aligned_cols=184  Identities=38%  Similarity=0.583  Sum_probs=173.1

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCC-CCCCCCCHHHHHHHHHHhhcCCCeeeeCCCCCCHHHHHHHHHHHH
Q 036518            3 EALLFHNLRKASALNKFLSLRLKRYEVPKVQGPV-VKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWK   81 (223)
Q Consensus         3 ~~~~~~~~~~a~~k~~~l~~~L~~~e~~~~~~p~-~dpe~LT~kERk~LRk~Ah~LKpvV~IGK~GVTdgVIeeI~~~Lk   81 (223)
                      .++|.++++.++.|+++....|.+++.++.+... .+++.+|.+++.+++++|.++++++.+|++|+++|++.++|.||+
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~t~ee~~~~~k~g~k~~~~~~~~rrg~f~g~i~n~~l~wk  422 (564)
T KOG1990|consen  343 TEAIFHKLEKAKKKLASANRILAKLEDPKIPAELRYDPESITEEERLMLRKVGLKMKRRLLSGRRGVFDGVIENMHLHWK  422 (564)
T ss_pred             HHHHHHHHhhhhhhccchhhhhhcccccccccccccchhhcChHHHHHHHHHHHhhccccccCCcccccceeecchhhhh
Confidence            4789999999999999999999999998885544 999999999999999999999999999999999999999999999


Q ss_pred             hCCeeEEEecCCCh-hhHHHHHHHHHHHhCCeeEEEECC---eEEEEecCCCCCCCCCCCCcccccHHHHHHHhHHHHHH
Q 036518           82 KHETVKVFCKPSKP-GQIHEFAEEIARLSGGIPIQIIGD---DTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSL  157 (223)
Q Consensus        82 ~hELVKVkv~~~~~-~d~keiAeeLa~~sGg~LVqvIG~---~aII~YRgKny~~P~~l~P~~lL~KrkAl~rs~~~q~~  157 (223)
                      +||++||+|+.... .++++.|..++..+|+.+|+++.+   ++|++|||+||.+|..++|.++|+||+|+.+|+++|+.
T Consensus       423 ~~e~~k~i~~~~~~~~~~~~~a~~le~esg~~~v~~~~~~~~~ai~~yr~k~y~~p~~l~P~~~l~~~k~~~~~~~~~~~  502 (564)
T KOG1990|consen  423 SRELVKVICKEKNLPSQVKQYASALERESGGILVSIDKNPKGYAIIAYRGKNYDRPTSLRPRNLLSRRKALERSLEEQRK  502 (564)
T ss_pred             hcccceeeeccccccHHHHHHHHHHHHHhCCceeeeccCCchhhHHHhhhhhccCCcccCchhhhcccCCccccHHHHHH
Confidence            99999999999876 999999999999999999999854   35899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 036518          158 ESVRRFIAMAEKELELYYRHIALYGDPNN  186 (223)
Q Consensus       158 ~~l~~~i~~~e~~~~~~~~~~~~~~~~~~  186 (223)
                      +++++||..++.+++++++++.....++.
T Consensus       503 ~a~~~~i~~~~~~~e~~~~~~~~~~~~~~  531 (564)
T KOG1990|consen  503 EALKSHISDLEQEIEQLQASVEAMPAINK  531 (564)
T ss_pred             HHHhhhcchhhhhHHHhhcchhccccccc
Confidence            99999999999999999999998766554

>KOG1990 consensus Poly(A)-specific exoribonuclease PARN [Replication, recombination and repair]

Probab=97.99  E-value=6.3e-06  Score=81.22  Aligned_cols=117  Identities=24%  Similarity=0.348  Sum_probs=104.4

Q ss_pred             HHHHHHHHHhccCCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCeeeeCCCCCCHHHHHHHHHHHHhCCeeEEEecCCC
Q 036518           15 ALNKFLSLRLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSK   94 (223)
Q Consensus        15 ~k~~~l~~~L~~~e~~~~~~p~~dpe~LT~kERk~LRk~Ah~LKpvV~IGK~GVTdgVIeeI~~~Lk~hELVKVkv~~~~   94 (223)
                      .....+.+.++.|..|.+.-|...+..+|..+.-++|.+|....|++.+|.++.-.++.-.|..+|..|+..|+.+....
T Consensus       148 ~~~dl~~~~i~~~~~p~r~l~~~~~~~l~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~~~~rg~  227 (564)
T KOG1990|consen  148 VDADLLPEKIPDYMRPFRTLPVGSPPLLTSIESTLLRRLGYKLPPHFALGRSRKLQGLAVAMVSFWEKHEFAKILIKRGV  227 (564)
T ss_pred             chhhhchhhhhcccChhccCCCCChhhhhhHHHHHHHHhcccccccceehhccccccchhHHHHHHHHHHHHHHHHHhcc
Confidence            34556778899999999999999999999999999999999999999999999999999999999999999998888765


Q ss_pred             -hhhHHHHHHHH--HHHhCCeeEEEECCeEEEEecCCCCCC
Q 036518           95 -PGQIHEFAEEI--ARLSGGIPIQIIGDDTVIFYRGKNYVQ  132 (223)
Q Consensus        95 -~~d~keiAeeL--a~~sGg~LVqvIG~~aII~YRgKny~~  132 (223)
                       ......+|.++  -..+|+.||...+- .+++|+++++-.
T Consensus       228 ~~~~~~~~a~~l~~~~~tg~~lv~hN~~-~dv~y~~~~Fl~  267 (564)
T KOG1990|consen  228 LETRKERMADELQELLLTGKVLVLHNKL-LDVMYRYKNFLS  267 (564)
T ss_pred             hhhhccchHHHHHHHHhcCCeEEeeccc-eeeeeehhhccc
Confidence             34445677777  78899999999998 788999999977

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	223
1rq8_A	104	Conserved hypothetical protein; structural genomic	4e-20
1jo0_A	98	Hypothetical protein HI1333; structural genomics,	8e-20
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1 Length = 104

 Score = 80.8 bits (200), Expect = 4e-20
 Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 2/99 (2%)

Query: 42  LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
           LTG+++ Y + +A        IG+ G+   +I  +    +  E +KV    +      E 
Sbjct: 2   LTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKEL 61

Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSPID 140
           AE ++  +    +Q+IG   ++ YR ++    EI  P++
Sbjct: 62  AETLSEATRSELVQVIG-SMIVIYR-ESKENKEIELPLE 98

>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A Length = 98

 Score = 79.6 bits (197), Expect = 8e-20
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 1/85 (1%)

Query: 42  LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
           L+ +++ + K +A   +  V +G  G+  GV+  +      HE +KV    +        
Sbjct: 3   LSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLI 62

Query: 102 AEEIARLSGGIPIQIIGDDTVIFYR 126
              I R +    +Q IG   ++ YR
Sbjct: 63  INAIVRETKAAQVQTIG-HILVLYR 86

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 5e-05
 Identities = 20/175 (11%), Positives = 51/175 (29%), Gaps = 32/175 (18%)

Query: 67  GVFGGVILNMHMHW---------KKHETVKVFCKPSKPGQIHEFAEEIA--RLSGGIPIQ 115
            +    I +    W         K    ++      +P +  +  + ++    S  IP  
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390

Query: 116 IIGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYY 175
           ++     + +         ++  ++ L K   +EK   E ++     ++ +  K    Y 
Sbjct: 391 LL----SLIWFDVIKSDVMVV--VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444

Query: 176 RH---IALYGDPNNRNPMSIMDNPS------------KVTKESWKFKMVERKSLD 215
            H   +  Y  P   +   ++                K  +   +  +     LD
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	223
1rq8_A	104	Conserved hypothetical protein; structural genomic	99.97
1jo0_A	98	Hypothetical protein HI1333; structural genomics,	99.97

>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1

Probab=99.97  E-value=3.8e-31  Score=207.44  Aligned_cols=97  Identities=24%  Similarity=0.423  Sum_probs=90.8

Q ss_pred             CCCHHHHHHHHHHhhcCCCeeeeCCCCCCHHHHHHHHHHHHhCCeeEEEecCCChhhHHHHHHHHHHHhCCeeEEEECCe
Q 036518           41 ELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDD  120 (223)
Q Consensus        41 ~LT~kERk~LRk~Ah~LKpvV~IGK~GVTdgVIeeI~~~Lk~hELVKVkv~~~~~~d~keiAeeLa~~sGg~LVqvIG~~  120 (223)
                      |||++||++||++||+|+|+|+|||+|||++|+++|+++|++||||||+|.+++.++++++|++||+.|||++||+||+ 
T Consensus         1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~IG~-   79 (104)
T 1rq8_A            1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVIGS-   79 (104)
T ss_dssp             CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEETT-
T ss_pred             CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECC-
Confidence            6999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             EEEEecCCCCCCCCCCCCc
Q 036518          121 TVIFYRGKNYVQPEIMSPI  139 (223)
Q Consensus       121 aII~YRgKny~~P~~l~P~  139 (223)
                      ++++||++. ..|.+..|-
T Consensus        80 ~~VLYR~~~-~~~~i~~~~   97 (104)
T 1rq8_A           80 MIVIYRESK-ENKEIELPL   97 (104)
T ss_dssp             EEEEEECCC-SCCSCCCC-
T ss_pred             EEEEEeCCC-CCCceeccc
Confidence            556799875 677777773

>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A

Probab=99.97  E-value=1.5e-30  Score=201.80  Aligned_cols=96  Identities=22%  Similarity=0.367  Sum_probs=89.3

Q ss_pred             CCCHHHHHHHHHHhhcCCCeeeeCCCCCCHHHHHHHHHHHHhCCeeEEEecCCChhhHHHHHHHHHHHhCCeeEEEECCe
Q 036518           41 ELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDD  120 (223)
Q Consensus        41 ~LT~kERk~LRk~Ah~LKpvV~IGK~GVTdgVIeeI~~~Lk~hELVKVkv~~~~~~d~keiAeeLa~~sGg~LVqvIG~~  120 (223)
                      .||++||++||++||+|+|+|+||++|||++|+++|+++|++||||||+|.+++.++++++|++||+.|||++||+||+ 
T Consensus         2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG~-   80 (98)
T 1jo0_A            2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIGH-   80 (98)
T ss_dssp             CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEETT-
T ss_pred             CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECC-
Confidence            6999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             EEEEecCCCCCCCCCCCCc
Q 036518          121 TVIFYRGKNYVQPEIMSPI  139 (223)
Q Consensus       121 aII~YRgKny~~P~~l~P~  139 (223)
                      ++++||+.  ..|.+..|.
T Consensus        81 ~~vLyR~~--~~~~i~lp~   97 (98)
T 1jo0_A           81 ILVLYRPS--EEAKIQLPR   97 (98)
T ss_dssp             EEEEECCC--SSCCBCCCC
T ss_pred             EEEEEccC--CCCCcCCCC
Confidence            55679986  336666664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	223
d1jo0a_	97	d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus i	1e-24
d1rq8a_	96	d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphy	2e-24

>d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]} Length = 97

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: YhbY-like
family: YhbY-like
domain: YhbY homologue HI1333
species: Haemophilus influenzae [TaxId: 727]

 Score = 91.3 bits (227), Expect = 1e-24
 Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 3/97 (3%)

Query: 42  LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
           L+ +++ + K +A   +  V +G  G+  GV+  +      HE +KV    +        
Sbjct: 3   LSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLI 62

Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSP 138
              I R +    +Q IG   ++ YR     + +I  P
Sbjct: 63  INAIVRETKAAQVQTIG-HILVLYRPSE--EAKIQLP 96

>d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]} Length = 96

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: YhbY-like
family: YhbY-like
domain: Hypothetical protein SAV1595
species: Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]

 Score = 90.1 bits (224), Expect = 2e-24
 Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 2/97 (2%)

Query: 42  LTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEF 101
           LTG+++ Y + +A        IG+ G+   +I  +    +  E +KV    +      E 
Sbjct: 2   LTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKEL 61

Query: 102 AEEIARLSGGIPIQIIGDDTVIFYRGKNYVQPEIMSP 138
           AE ++  +    +Q+IG   ++ YR       EI  P
Sbjct: 62  AETLSEATRSELVQVIG-SMIVIYRESKE-NKEIELP 96

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	223
d1jo0a_	97	YhbY homologue HI1333 {Haemophilus influenzae [Tax	99.97
d1rq8a_	96	Hypothetical protein SAV1595 {Staphylococcus aureu	99.97

>d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: YhbY-like
family: YhbY-like
domain: YhbY homologue HI1333
species: Haemophilus influenzae [TaxId: 727]

Probab=99.97  E-value=6.3e-31  Score=200.95  Aligned_cols=97  Identities=22%  Similarity=0.362  Sum_probs=91.1

Q ss_pred             CCCCHHHHHHHHHHhhcCCCeeeeCCCCCCHHHHHHHHHHHHhCCeeEEEecCCChhhHHHHHHHHHHHhCCeeEEEECC
Q 036518           40 HELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGD  119 (223)
Q Consensus        40 e~LT~kERk~LRk~Ah~LKpvV~IGK~GVTdgVIeeI~~~Lk~hELVKVkv~~~~~~d~keiAeeLa~~sGg~LVqvIG~  119 (223)
                      .+||++||++||++||+|+|+|+||++|||++|+++|+.+|++||||||+|.+++.+++++++++||+.|||.+||++|+
T Consensus         1 ttLt~kqr~~LR~~ah~lkp~v~IGk~Glt~~vi~ei~~al~~~ELIKvki~~~~~~~~~~~~~~l~~~t~~~vV~~iG~   80 (97)
T d1jo0a_           1 TTLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIGH   80 (97)
T ss_dssp             CCCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEETT
T ss_pred             CCCCHHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHHHHHHhCCeEEEEEcCCCHHHHHHHHHHHHHHhCCEEEEEECC
Confidence            36999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEecCCCCCCCCCCCCc
Q 036518          120 DTVIFYRGKNYVQPEIMSPI  139 (223)
Q Consensus       120 ~aII~YRgKny~~P~~l~P~  139 (223)
                       ++||||+.  ..|.+..|+
T Consensus        81 -~~ilYR~~--~~~~i~lPk   97 (97)
T d1jo0a_          81 -ILVLYRPS--EEAKIQLPR   97 (97)
T ss_dssp             -EEEEECCC--SSCCBCCCC
T ss_pred             -EEEEEcCC--CCCCCCCCC
Confidence             56779985  468888885

>d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: YhbY-like
family: YhbY-like
domain: Hypothetical protein SAV1595
species: Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]

Probab=99.97  E-value=8.3e-31  Score=199.95  Aligned_cols=96  Identities=24%  Similarity=0.407  Sum_probs=89.8

Q ss_pred             CCCHHHHHHHHHHhhcCCCeeeeCCCCCCHHHHHHHHHHHHhCCeeEEEecCCChhhHHHHHHHHHHHhCCeeEEEECCe
Q 036518           41 ELTGEERFYFKKMAQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQIIGDD  120 (223)
Q Consensus        41 ~LT~kERk~LRk~Ah~LKpvV~IGK~GVTdgVIeeI~~~Lk~hELVKVkv~~~~~~d~keiAeeLa~~sGg~LVqvIG~~  120 (223)
                      |||++||++||++||+|+|+|+||++|||++|+++|+.+|+.||||||+|.+++.++++++|++||+.|||++||++|+ 
T Consensus         1 mLt~kqr~~LR~~ah~l~p~v~IGk~Glt~~vi~ei~~~l~~~ELIKvk~~~~~~~~~~~~~~~l~~~t~a~~V~~iG~-   79 (96)
T d1rq8a_           1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVIGS-   79 (96)
T ss_dssp             CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEETT-
T ss_pred             CcCHHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHHHHHHhCCeeEEEecCCCHHHHHHHHHHHHHHhCCEEEEEECC-
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             EEEEecCCCCCCCCCCCC
Q 036518          121 TVIFYRGKNYVQPEIMSP  138 (223)
Q Consensus       121 aII~YRgKny~~P~~l~P  138 (223)
                      ++++||+. ...|.+.+|
T Consensus        80 ~~vlyR~~-~~~~ki~LP   96 (96)
T d1rq8a_          80 MIVIYRES-KENKEIELP   96 (96)
T ss_dssp             EEEEEECC-CSCCSCCCC
T ss_pred             EEEEEeCC-CCCCCCCCC
Confidence            55669975 456777776