Citrus Sinensis ID: 036556

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------
MAATSKTFLFALLLHISFLIPSHQYHPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTTNPPRQAFVVARIDHQTHEIIVDLSLQEITSKKTYNGYGYPLLTEEEQEDANKLASTYPLFVASISKRGLKLEEVECGSFTLGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDPDEMKIIQFRDRITVLVPKGDGTEYRESKLKPPFRPSLKRTTVVQPDRPSFNIVGSQI
cccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccccEEEEEEEcccccHHHHHHHHccccccccccEEEEEEEEcccEEEEEEEccccEEEEEEEEcccccccccHHHHHHHHHHHcccHHHHHHHHHHccccccEEEEcccccccccccccccEEEEEEEEEccccccccccccccEEEEEccccEEEEEEccccEEcccccccccccccccccccccccccEEEccccccEEEEcccc
ccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccccccEEEEEEEEccccHHHHHHHHHcHHHcccccEEEEEEEEccEEEEEEEEccccEEEEEEEcccccEccccHHHHHHHccHHHHcHHHHHHHHHccccHHHEEEEEEccccccccccccEEEEEEEEEccccccHHHcEcccEEEEEEccccEEEEEEEcccccccccccccccHHHcccccccccccEEEEccccccEEEEccEE
MAATSKTFLFALLLHISFlipshqyhpldsltpsefTQIRSIVTkaypksthnltfqyvgleerTKQTVLSWLrnetttnpprqAFVVARIDHQTHEIIVDLSLQEitskktyngygypllteeeQEDANKLASTYPLFVASISKRglkleevecgsftlgwfgeerkNKRIVKMMCYYLDgtlnadmrpiegitmtvdpdemkiiqFRDRItvlvpkgdgteyresklkppfrpslkrttvvqpdrpsfnivgsqi
MAATSKTFLFALLLHISFLIPSHQYHPLDSLTPSEFTQIRSIVtkaypksthnLTFQYVGLEERTKQTVLSWLrnetttnpprQAFVVARIDHQTHEIIVdlslqeitskkTYNGYGYPLLTEEEQEDANKLASTYPLFVASISKRGLKLEEVEcgsftlgwfgeerknkrIVKMMCYYLDGTLNADMRPIEGITMTVDPDEMKIIQfrdritvlvpkgdgteyresklkppfrpslkrttvvqpdrpsfnivgsqi
MAATSKTFLFALLLHISFLIPSHQYHPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTTNPPRQAFVVARIDHQTHEIIVDLSLQEITSKKTYNGYGYPLLTEEEQEDANKLASTYPLFVASISKRGLKLEEVECGSFTLGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDPDEMKIIQFRDRITVLVPKGDGTEYRESKLKPPFRPSLKRTTVVQPDRPSFNIVGSQI
******TFLFALLLHISFLIPSHQYHPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTTNPPRQAFVVARIDHQTHEIIVDLSLQEITSKKTYNGYGYPLLTEE****ANKLASTYPLFVASISKRGLKLEEVECGSFTLGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDPDEMKIIQFRDRITVLVP****************************************
******TFLFALLLHISFLIPSHQYHPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTTNPPRQAFVVARIDHQTHEIIVDLSLQEITSKKTYNGYGYPLLTEEEQEDANKLASTYPLFVASISKRGLKLEEVECGSFTLGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDPDEMKIIQFRDRITVLVPKGDGTE***************RTTVVQPDRPSFNIVGSQI
MAATSKTFLFALLLHISFLIPSHQYHPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTTNPPRQAFVVARIDHQTHEIIVDLSLQEITSKKTYNGYGYPLLTEEEQEDANKLASTYPLFVASISKRGLKLEEVECGSFTLGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDPDEMKIIQFRDRITVLVPKGDGTEYRESKLKPPFRPSLKRTTVVQPDRPSFNIVGSQI
*AATSKTFLFALLLHISFLIPSHQYHPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTTNPPRQAFVVARIDHQTHEIIVDLSLQEITSKKTYNGYGYPLLTEEEQEDANKLASTYPLFVASISKRGLKLEEVECGSFTLGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDPDEMKIIQFRDRITVLVPKGDGTEYRESKLKPPFRPSLKRTTVVQPDRPSFNIV*SQI
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAATSKTFLFALLLHISFLIPSHQYHPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTTNPPRQAFVVARIDHQTHEIIVDLSLQEITSKKTYNGYGYPLLTEEEQEDANKLASTYPLFVASISKRGLKLEEVECGSFTLGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDPDEMKIIQFRDRITVLVPKGDGTEYRESKLKPPFRPSLKRTTVVQPDRPSFNIVGSQI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query257 2.2.26 [Sep-21-2011]
P49252 667 Primary amine oxidase (Fr N/A no 0.976 0.376 0.439 4e-57
Q43077 674 Primary amine oxidase OS= N/A no 0.996 0.379 0.439 6e-57
Q8H1H9 712 Primary amine oxidase OS= no no 0.879 0.317 0.347 8e-33
Q07121 648 Primary amine oxidase OS= N/A no 0.875 0.347 0.247 4e-12
Q07123 648 Copper methylamine oxidas N/A no 0.875 0.347 0.247 4e-12
P49250 755 Primary amine oxidase OS= yes no 0.875 0.298 0.274 8e-11
P46883 757 Primary amine oxidase OS= N/A no 0.875 0.297 0.253 4e-10
P80695 752 Primary amine oxidase OS= yes no 0.859 0.293 0.261 1e-08
Q59118 684 Histamine oxidase OS=Arth N/A no 0.879 0.330 0.262 2e-07
P46881 638 Phenylethylamine oxidase N/A no 0.486 0.195 0.242 0.0006
>sp|P49252|AMO_LENCU Primary amine oxidase (Fragment) OS=Lens culinaris PE=1 SV=3 Back     alignment and function desciption
 Score =  221 bits (563), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 113/257 (43%), Positives = 159/257 (61%), Gaps = 6/257 (2%)

Query: 6   KTFLFALLLHISF-----LIPSHQYHPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVG 60
           K  LF++L  +SF       P H  HPLD +T  EF  +++IV   YP S + L F Y+G
Sbjct: 1   KFALFSVLTLLSFHAVFSFTPLHTQHPLDPITKEEFLAVQTIVQNKYPISNNKLAFHYIG 60

Query: 61  LEERTKQTVLSWLRNETTTNPPRQAFVVARIDHQTHEIIVDLSLQEITSKKTYNGYGYPL 120
           +++  K  VL +  + T  + PR+ FVVA I+ QTHEI++DL+++ I S   +NGYG+P+
Sbjct: 61  VDDPEKDLVLKYETSPTLISIPRKIFVVAIINSQTHEILIDLTIKSIVSDNIHNGYGFPV 120

Query: 121 LTEEEQEDANKLASTYPLFVASISKRGLKLEEVECGSFTLGWFGEERKNKRIVKMMCYYL 180
           L+  EQ  A  L   YP F+AS++KRGL + E+ C SFT+GWFGEE KN R V++ C+  
Sbjct: 121 LSAAEQFLAIDLPLKYPPFIASVNKRGLNISEIVCSSFTMGWFGEE-KNSRTVRVDCFMK 179

Query: 181 DGTLNADMRPIEGITMTVDPDEMKIIQFRDRITVLVPKGDGTEYRESKLKPPFRPSLKRT 240
           + T+N  +RPI GIT+  D D MKI+++ DR T  VP  + TEY+ SK  PPF P     
Sbjct: 180 ESTVNIYVRPITGITIVADLDLMKIVEYHDRDTEAVPTAENTEYQVSKQSPPFGPKQHSL 239

Query: 241 TVVQPDRPSFNIVGSQI 257
           T  QP  P F I G+ +
Sbjct: 240 TSHQPQGPGFQINGTSV 256

Lens culinaris (taxid: 3864)
EC: 1EC: .EC: 4EC: .EC: 3EC: .EC: 2EC: 1
>sp|Q43077|AMO_PEA Primary amine oxidase OS=Pisum sativum PE=1 SV=1 Back     alignment and function description
>sp|Q8H1H9|AMO_ARATH Primary amine oxidase OS=Arabidopsis thaliana GN=At1g62810 PE=2 SV=1 Back     alignment and function description
>sp|Q07121|AMO1_ARTS1 Primary amine oxidase OS=Arthrobacter sp. (strain P1) GN=maoI PE=1 SV=1 Back     alignment and function description
>sp|Q07123|AMO2_ARTS1 Copper methylamine oxidase OS=Arthrobacter sp. (strain P1) GN=maoII PE=1 SV=1 Back     alignment and function description
>sp|P49250|AMO_ENTAE Primary amine oxidase OS=Enterobacter aerogenes GN=maoA PE=1 SV=1 Back     alignment and function description
>sp|P46883|AMO_ECOLI Primary amine oxidase OS=Escherichia coli (strain K12) GN=tynA PE=1 SV=1 Back     alignment and function description
>sp|P80695|AMO_KLEOK Primary amine oxidase OS=Klebsiella oxytoca (strain ATCC 8724 / DSM 4798 / JCM 20051 / NBRC 3318 / NRRL B-199 / KCTC 1686) GN=maoA PE=1 SV=2 Back     alignment and function description
>sp|Q59118|AMOH_ARTGO Histamine oxidase OS=Arthrobacter globiformis PE=1 SV=3 Back     alignment and function description
>sp|P46881|PAOX_ARTGO Phenylethylamine oxidase OS=Arthrobacter globiformis PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query257
224108047 673 predicted protein [Populus trichocarpa] 0.922 0.352 0.630 3e-83
224102055 668 predicted protein [Populus trichocarpa] 0.992 0.381 0.587 8e-81
255551473 689 Amine oxidase [copper-containing] precur 0.988 0.368 0.571 1e-77
225432636 674 PREDICTED: primary amine oxidase [Vitis 0.906 0.345 0.588 3e-75
147794975 644 hypothetical protein VITISV_029120 [Viti 0.906 0.361 0.588 3e-75
225432644 676 PREDICTED: primary amine oxidase [Vitis 0.898 0.341 0.580 7e-72
147832635 1265 hypothetical protein VITISV_040530 [Viti 0.898 0.182 0.576 3e-71
147806124 654 hypothetical protein VITISV_012123 [Viti 0.906 0.356 0.576 7e-69
449444246 681 PREDICTED: primary amine oxidase-like [C 0.964 0.364 0.539 2e-68
225432632 667 PREDICTED: primary amine oxidase [Vitis 0.906 0.349 0.572 7e-68
>gi|224108047|ref|XP_002314703.1| predicted protein [Populus trichocarpa] gi|222863743|gb|EEF00874.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 150/238 (63%), Positives = 184/238 (77%), Gaps = 1/238 (0%)

Query: 21  PSHQ-YHPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTT 79
           P+HQ  HPLDSLTP+EF++IR+IV  +YP  +H   F YVGLE+  K TVLSWL++ TT 
Sbjct: 21  PTHQRQHPLDSLTPAEFSKIRAIVHSSYPIPSHTTAFHYVGLEDPNKLTVLSWLKDPTTK 80

Query: 80  NPPRQAFVVARIDHQTHEIIVDLSLQEITSKKTYNGYGYPLLTEEEQEDANKLASTYPLF 139
            PPRQAFV+ARI+  THEI VDL++ +I S K Y+GYGYPLLT EEQ  AN L   Y  F
Sbjct: 81  TPPRQAFVIARINQTTHEITVDLTINKIVSDKLYDGYGYPLLTFEEQIAANALPLKYAPF 140

Query: 140 VASISKRGLKLEEVECGSFTLGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGITMTVD 199
           + SI KRGLK+EEV CG FT+GW+GEER+ KRIV++MCYYLDGT+NA MRP+EG+T+TVD
Sbjct: 141 LESIRKRGLKIEEVVCGGFTVGWYGEERRKKRIVRVMCYYLDGTVNAYMRPVEGVTVTVD 200

Query: 200 PDEMKIIQFRDRITVLVPKGDGTEYRESKLKPPFRPSLKRTTVVQPDRPSFNIVGSQI 257
            +E KII F+DR+TV +PKGDGT+YR SK  PPF   LK  T+VQPD PSF I G +I
Sbjct: 201 LEETKIIGFKDRLTVPIPKGDGTDYRGSKQNPPFLAQLKGITMVQPDGPSFTIDGHRI 258

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224102055|ref|XP_002312527.1| predicted protein [Populus trichocarpa] gi|222852347|gb|EEE89894.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255551473|ref|XP_002516782.1| Amine oxidase [copper-containing] precursor, putative [Ricinus communis] gi|223543870|gb|EEF45396.1| Amine oxidase [copper-containing] precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225432636|ref|XP_002278244.1| PREDICTED: primary amine oxidase [Vitis vinifera] gi|297737034|emb|CBI26235.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147794975|emb|CAN73878.1| hypothetical protein VITISV_029120 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225432644|ref|XP_002278327.1| PREDICTED: primary amine oxidase [Vitis vinifera] gi|297737038|emb|CBI26239.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147832635|emb|CAN68223.1| hypothetical protein VITISV_040530 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147806124|emb|CAN76699.1| hypothetical protein VITISV_012123 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449444246|ref|XP_004139886.1| PREDICTED: primary amine oxidase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225432632|ref|XP_002278182.1| PREDICTED: primary amine oxidase [Vitis vinifera] gi|297737032|emb|CBI26233.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query257
TAIR|locus:2028606 681 AT1G31710 [Arabidopsis thalian 0.953 0.359 0.446 1.8e-55
UNIPROTKB|Q43077 674 Q43077 "Primary amine oxidase" 0.996 0.379 0.439 2.6e-54
TAIR|locus:2028666 741 AT1G31670 [Arabidopsis thalian 0.910 0.315 0.460 1.6e-53
TAIR|locus:2028636 677 AT1G31690 [Arabidopsis thalian 0.972 0.369 0.463 4.9e-53
TAIR|locus:2129520 650 AO1 "amine oxidase 1" [Arabido 0.871 0.344 0.420 5.8e-43
TAIR|locus:2026267 712 CuAO1 "COPPER AMINE OXIDASE1" 0.879 0.317 0.347 4.5e-32
TAIR|locus:2139069 741 AT4G12290 [Arabidopsis thalian 0.867 0.300 0.360 4.5e-30
TAIR|locus:2080173 687 AT3G43670 [Arabidopsis thalian 0.879 0.328 0.321 1.2e-28
TAIR|locus:2139039 460 AT4G12270 [Arabidopsis thalian 0.871 0.486 0.356 4e-28
UNIPROTKB|P46883 757 tynA "TynA" [Escherichia coli 0.875 0.297 0.253 3.4e-11
TAIR|locus:2028606 AT1G31710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 112/251 (44%), Positives = 162/251 (64%)

Query:     8 FLFALLLHISFLIPSHQYHPLDSLTPSEFTQIRSIVTKAYPKS-THNLTFQYVGLEERTK 66
             F F +++  S   P    HP D LT +E   +R+I+ K+YP    H  TFQYVGL E  K
Sbjct:    12 FSFVIVVSSSSFTPPR--HPFDPLTETELKLVRTIINKSYPVGPNHKFTFQYVGLNEPNK 69

Query:    67 QTVLSWLR--NETTTNPPRQAFVVARIDHQTHEIIVDLSLQEITSKKTYNGYGYPLLTEE 124
               VLSW    N T   PPRQAFV+AR + +T EI++D S + I S K + G GYP+L+ +
Sbjct:    70 SLVLSWYSSPNHTIKPPPRQAFVIARDNGKTREIVLDFSSRAIVSDKIHVGNGYPMLSND 129

Query:   125 EQEDANKLASTYPLFVASISKRGLKLEEVECGSFTLGWFGEERKN-KRIVKMMCYYLDGT 183
             EQE + +L   +  F+ S++KRGL + E+   + T+GW+GE +   +R++++M +YLDGT
Sbjct:   130 EQEASTELVVKFKPFIDSVAKRGLNVSEIVFTTSTIGWYGETKAEAERVIRLMPFYLDGT 189

Query:   184 LNADMRPIEGITMTVDPDEMKIIQFRDRITVLVPKGDGTEYRESKLKPPFRPSLKRTTVV 243
             +N  +RPIEG+T+ V+ DEMK+ +F+DR  V +P  +GTEYR SKL PPF P+L    ++
Sbjct:   190 VNMYLRPIEGMTIIVNLDEMKVSEFKDRSVVTMPIANGTEYRISKLNPPFGPTLHNAVLL 249

Query:   244 QPDRPSFNIVG 254
             QPD P F + G
Sbjct:   250 QPDGPGFKVDG 260
GO:0005507 "copper ion binding" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0008131 "primary amine oxidase activity" evidence=IEA
GO:0009308 "amine metabolic process" evidence=IEA
GO:0048038 "quinone binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0006569 "tryptophan catabolic process" evidence=RCA
GO:0009611 "response to wounding" evidence=RCA
GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA
GO:0009805 "coumarin biosynthetic process" evidence=RCA
UNIPROTKB|Q43077 Q43077 "Primary amine oxidase" [Pisum sativum (taxid:3888)] Back     alignment and assigned GO terms
TAIR|locus:2028666 AT1G31670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028636 AT1G31690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2129520 AO1 "amine oxidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026267 CuAO1 "COPPER AMINE OXIDASE1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139069 AT4G12290 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080173 AT3G43670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139039 AT4G12270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P46883 tynA "TynA" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.X.5919.1
hypothetical protein (632 aa)
(Populus trichocarpa)
Predicted Functional Partners:
KNOX3
SubName- Full=KNOX3; Flags- Fragment; (369 aa)
      • 0.510
TUB2
tubulin, beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GT [...] (442 aa)
      • 0.507

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query257
PLN02566 646 PLN02566, PLN02566, amine oxidase (copper-containi 3e-62
PRK11504 647 PRK11504, tynA, tyramine oxidase; Provisional 3e-38
COG3733 654 COG3733, TynA, Cu2+-containing amine oxidase [Seco 5e-27
pfam02728101 pfam02728, Cu_amine_oxidN3, Copper amine oxidase, 4e-23
pfam0272786 pfam02727, Cu_amine_oxidN2, Copper amine oxidase, 3e-18
PRK14696 721 PRK14696, tynA, tyramine oxidase; Provisional 3e-15
>gnl|CDD|215306 PLN02566, PLN02566, amine oxidase (copper-containing) Back     alignment and domain information 
 Score =  206 bits (525), Expect = 3e-62
 Identities = 97/227 (42%), Positives = 136/227 (59%), Gaps = 3/227 (1%)

Query: 9   LFALLLHISFLIPSHQYHPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQT 68
           + AL+  +     +  YHPLD L P E  +IR IV K++  +  NLTF ++ LEE  K+ 
Sbjct: 5   ILALVFILQCCFVASLYHPLDPLNPQEINKIRLIVQKSHLGNLPNLTFHFLDLEEPEKRD 64

Query: 69  VLSWLR--NETTTNPPRQAFVVARIDHQTHEIIVDLSLQEITSKKTYNGYGYPLLTEEEQ 126
           VL WL       + PPR+A VV R   +T+E+IVDL+   ITS + Y G+GYP LT  E 
Sbjct: 65  VLKWLSSNPSNKSPPPRRAKVVVRAGGETYELIVDLATGSITSSRVYTGHGYPPLTFIEL 124

Query: 127 EDANKLASTYPLFVASISKRGLKLEEVECGSFTLGWFGEERKNKRIVKMMCYYLDGTLNA 186
             A+KL   YP F  SI +RGL + EV C  FT+GW+GE    KR +K+ C+Y  G++N 
Sbjct: 125 FQASKLPLKYPKFKKSILRRGLNISEVSCIPFTVGWYGET-VTKRALKISCFYRGGSVNV 183

Query: 187 DMRPIEGITMTVDPDEMKIIQFRDRITVLVPKGDGTEYRESKLKPPF 233
             RPIEGI++ +D D M+II++ DR    +PK +GT++R       F
Sbjct: 184 FARPIEGISILIDVDSMQIIKYSDRFRAPLPKAEGTDFRTKHKPFSF 230

Length = 646
>gnl|CDD|236919 PRK11504, tynA, tyramine oxidase; Provisional Back     alignment and domain information
>gnl|CDD|226256 COG3733, TynA, Cu2+-containing amine oxidase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|202361 pfam02728, Cu_amine_oxidN3, Copper amine oxidase, N3 domain Back     alignment and domain information
>gnl|CDD|145726 pfam02727, Cu_amine_oxidN2, Copper amine oxidase, N2 domain Back     alignment and domain information
>gnl|CDD|184793 PRK14696, tynA, tyramine oxidase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 257
PRK11504 647 tynA tyramine oxidase; Provisional 100.0
PRK14696 721 tynA tyramine oxidase; Provisional 100.0
PLN02566 646 amine oxidase (copper-containing) 100.0
COG3733 654 TynA Cu2+-containing amine oxidase [Secondary meta 100.0
KOG1186 670 consensus Copper amine oxidase [Secondary metaboli 100.0
PF02728101 Cu_amine_oxidN3: Copper amine oxidase, N3 domain; 99.97
PF0272786 Cu_amine_oxidN2: Copper amine oxidase, N2 domain; 99.89
>PRK11504 tynA tyramine oxidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.6e-63  Score=488.10  Aligned_cols=231  Identities=28%  Similarity=0.458  Sum_probs=211.7

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCCeEEEEEecCCCChHhHHhhhhcCCCCCCCCeEEEEEEe--CCcEEE
Q 036556           20 IPSHQYHPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTTNPPRQAFVVARI--DHQTHE   97 (257)
Q Consensus        20 ~~~~~~HPLdpLs~~EI~~a~~iv~~~~~~~~~~~~F~~I~L~EP~K~~vl~~l~~~~~~~p~R~A~v~~~~--~~~~~E   97 (257)
                      +...+.|||||||++||++|++|||++++.+ ..++|++|+|+||+|++|++|++++   .++|+|+|++++  ++.+||
T Consensus         8 ~~~~~~HPLdpLt~~Ei~~a~~iv~~~~~~~-~~~~F~~i~L~EP~K~~v~~~~~g~---~~~R~a~v~~~~~~~~~~~e   83 (647)
T PRK11504          8 TAAAVSHPLDPLTAAEIEAAVAILRAEGLLG-ESTRFVSIELAEPPKAEVLAFDPGD---PIDRRAFVVLYDRATGKTYE   83 (647)
T ss_pred             cCCCCCCCCCCCCHHHHHHHHHHHHhccccC-CceEEEEeeccCCCHHHHHhhhcCC---CCCcEEEEEEEECCCCcEEE
Confidence            3444579999999999999999999998743 5799999999999999999999876   247999999997  688999


Q ss_pred             EEEeCCCCcEeEeeecCCCCCCCCCHHHHHHHHHHHhhChHHHHHHHHcCCC-CCceEEecccCCCCCCC-CCCccEEEE
Q 036556           98 IIVDLSLQEITSKKTYNGYGYPLLTEEEQEDANKLASTYPLFVASISKRGLK-LEEVECGSFTLGWFGEE-RKNKRIVKM  175 (257)
Q Consensus        98 ~vVdL~~~~v~~~~~~~~~~~p~~~~~E~~~~e~~~~~~p~v~~a~~~~gl~-~~~V~~dpw~~G~~~~~-~~~~Rl~q~  175 (257)
                      ++|||++++|++|+.+++ +||+++.+|+.+||++|++||.|+++|+||||+ +++|+||||++||++.. +.++|++||
T Consensus        84 ~vVdL~~~~V~~~~~~~~-~~p~~~~~e~~~~e~~~~~dp~~~~ai~~rgl~~~~~V~~dpw~~G~~~~~~~~~~Rl~~~  162 (647)
T PRK11504         84 AVVSLTAGEVVSWEEIPG-VQPPILLEEFEECEEVVRADPRWQAALAKRGITDFDLVMVDPWSAGYFGEPEERGRRLARG  162 (647)
T ss_pred             EEEECCCCEEEEEEECCC-ccCCcCHHHHHHHHHHHhcCHHHHHHHHHcCCCCcceEEEcCccccccCCCCcCCceEEEE
Confidence            999999999999999876 599999999999999999999999999999995 78999999999999875 347999999


Q ss_pred             EEEEEc-CCCCCCcCCCCCcEEEEeCCCcEEEEEeCCcceecCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCCceEEeC
Q 036556          176 MCYYLD-GTLNADMRPIEGITMTVDPDEMKIIQFRDRITVLVPKGDGTEYRESKLKPPFRPSLKRTTVVQPDRPSFNIVG  254 (257)
Q Consensus       176 ~~y~r~-~~~N~Ya~Pl~gl~~vvD~~~~kVi~I~d~~~~p~p~~~~~~Y~~~~~~~~~R~dlKPl~I~QPeGpSF~V~G  254 (257)
                      +||+|. +++|+||||||||+++||+++|||++|+|.|..|+|... +||+++++. ++|+|+|||+|+|||||||+|+|
T Consensus       163 ~~~~r~~~~~n~Ya~Pi~G~~~vvDl~~~~vv~i~d~g~~p~p~~~-~~Y~~~~~~-~~r~dlkPl~i~QPeG~sF~v~g  240 (647)
T PRK11504        163 LAFVRADPGDNGYARPIEGLVAVVDLNTMEVLRVEDHGVVPIPAED-GNYDPEFIP-PLRTDLKPLEITQPEGPSFTVDG  240 (647)
T ss_pred             EEEEecCCCccccccccCceEEEEECCCCEEEEEecCCCCCCCCCC-CCCChhHcc-ccccCCCCcceeCCCCCcEEEcC
Confidence            999995 889999999999999999999999999999888888776 599999874 79999999999999999999999


Q ss_pred             ccC
Q 036556          255 SQI  257 (257)
Q Consensus       255 ~~V  257 (257)
                      |.|
T Consensus       241 ~~V  243 (647)
T PRK11504        241 NEV  243 (647)
T ss_pred             CEE
Confidence            975

>PRK14696 tynA tyramine oxidase; Provisional Back     alignment and domain information
>PLN02566 amine oxidase (copper-containing) Back     alignment and domain information
>COG3733 TynA Cu2+-containing amine oxidase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>KOG1186 consensus Copper amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PF02728 Cu_amine_oxidN3: Copper amine oxidase, N3 domain; InterPro: IPR015802 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines Back     alignment and domain information
>PF02727 Cu_amine_oxidN2: Copper amine oxidase, N2 domain; InterPro: IPR015800 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query257
1w2z_A 649 Psao And Xenon Length = 649 1e-56
1ksi_A 642 Crystal Structure Of A Eukaryotic (Pea Seedling) Co 1e-55
1oac_A 727 Crystal Structure Of A Quinoenzyme: Copper Amine Ox 3e-11
1jrq_A 727 X-Ray Structure Analysis Of The Role Of The Conserv 3e-11
1qak_A 722 The Active Site Base Controls Cofactor Reactivity I 3e-11
1qal_A 721 The Active Site Base Controls Cofactor Reactivity I 3e-11
2wgq_A 727 Zinc Substituted E Coli Copper Amine Oxidase, A Mod 3e-11
1qaf_A 721 The Active Site Base Controls Cofactor Reactivity I 4e-11
2yx9_A 638 Crystal Structure Of D298k Copper Amine Oxidase Fro 4e-05
1ivu_A 638 Crystal Structure Of Copper Amine Oxidase From Arth 4e-05
1ivv_A 638 Crystal Structure Of Copper Amine Oxidase From Arth 4e-05
1ui7_A 638 Site-Directed Mutagenesis Of His433 Involved In Bin 4e-05
1sih_A 646 Agao In Covalent Complex With The Inhibitor Moba (" 4e-05
2e2u_A 628 Substrate Schiff-Base Analogue Of Copper Amine Oxid 4e-05
2cwt_A 638 Catalytic Base Deletion In Copper Amine Oxidase Fro 5e-05
1ui8_A 638 Site-directed Mutagenesis Of His592 Involved In Bin 5e-05
3nbj_B 657 Crystal Structure Of Y305f Mutant Of The Copper Ami 1e-04
1ekm_A 656 Crystal Structure At 2.5 A Resolution Of Zinc-Subst 1e-04
1a2v_A 655 Copper Amine Oxidase From Hansenula Polymorpha Leng 1e-04
3nbb_B 663 Crystal Structure Of Mutant Y305f Expressed In E. C 1e-04
3sx1_A 692 Hansenula Polymorpha Copper Amine Oxidase-1 In Its 4e-04
3n9h_A 692 Crystal Structural Of Mutant Y305a In The Copper Am 4e-04
>pdb|1W2Z|A Chain A, Psao And Xenon Length = 649 Back     alignment and structure 
Iteration: 1

 Score =  216 bits (549), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 108/237 (45%), Positives = 147/237 (62%), Gaps = 1/237 (0%)
Query: 21  PSHQYHPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTTN 80
           P H  HPLD LT  EF  +++IV   YP S + L F Y+GL++  K  VL +  + T  +
Sbjct: 3   PLHVQHPLDPLTKEEFLAVQTIVQNKYPISNNRLAFHYIGLDDPEKDHVLRYETHPTLVS 62
Query: 81  PPRQAFVVARIDHQTHEIIVDLSLQEITSKKTYNGYGYPLLTEEEQEDANKLASTYPLFV 140
            PR+ FVVA I+ QTHEI+++L ++ I S   +NGYG+P+L+ +EQ  A KL   YP F+
Sbjct: 63  IPRKIFVVAIINSQTHEILINLRIRSIVSDNIHNGYGFPILSVDEQSLAIKLPLKYPPFI 122
Query: 141 ASISKRGLKLEEVECGSFTLGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDP 200
            S+ KRGL L E+ C SFT+GWFGEE KN R V++ C+  + T+N  +RPI GIT+  D 
Sbjct: 123 DSVKKRGLNLSEIVCSSFTMGWFGEE-KNVRTVRLDCFMKESTVNIYVRPITGITIVADL 181
Query: 201 DEMKIIQFRDRITVLVPKGDGTEYRESKLKPPFRPSLKRTTVVQPDRPSFNIVGSQI 257
           D MKI+++ DR    VP  + TEY+ SK  PPF P     T  QP  P F I G  +
Sbjct: 182 DLMKIVEYHDRDIEAVPTAENTEYQVSKQSPPFGPKQHSLTSHQPQGPGFQINGHSV 238
>pdb|1KSI|A Chain A, Crystal Structure Of A Eukaryotic (Pea Seedling) Copper-Containing Amine Oxidase At 2.2a Resolution Length = 642 Back     alignment and structure
>pdb|1OAC|A Chain A, Crystal Structure Of A Quinoenzyme: Copper Amine Oxidase Of Escherichia Coli At 2 Angstroems Resolution Length = 727 Back     alignment and structure
>pdb|1JRQ|A Chain A, X-Ray Structure Analysis Of The Role Of The Conserved Tyrosine-369 In Active Site Of E. Coli Amine Oxidase Length = 727 Back     alignment and structure
>pdb|1QAK|A Chain A, The Active Site Base Controls Cofactor Reactivity In Escherichia Coli Amine Oxidase : X-ray Crystallographic Studies With Mutational Variants Length = 722 Back     alignment and structure
>pdb|1QAL|A Chain A, The Active Site Base Controls Cofactor Reactivity In Escherichia Coli Amine Oxidase : X-Ray Crystallographic Studies With Mutational Variants Length = 721 Back     alignment and structure
>pdb|2WGQ|A Chain A, Zinc Substituted E Coli Copper Amine Oxidase, A Model For The Precursor For 2,4,5-Trihydroxyphenylalaninequinone Formation Length = 727 Back     alignment and structure
>pdb|1QAF|A Chain A, The Active Site Base Controls Cofactor Reactivity In Escherichia Coli Amine Oxidase : X-Ray Crystallographic Studies With Mutational Variants Length = 721 Back     alignment and structure
>pdb|2YX9|A Chain A, Crystal Structure Of D298k Copper Amine Oxidase From Arthrobacter Globiformis Length = 638 Back     alignment and structure
>pdb|1IVU|A Chain A, Crystal Structure Of Copper Amine Oxidase From Arthrobacter Globiformis: Initial Intermediate In Topaquinone Biogenesis Length = 638 Back     alignment and structure
>pdb|1IVV|A Chain A, Crystal Structure Of Copper Amine Oxidase From Arthrobacter Globiformis: Early Intermediate In Topaquinone Biogenesis Length = 638 Back     alignment and structure
>pdb|1UI7|A Chain A, Site-Directed Mutagenesis Of His433 Involved In Binding Of Copper Ion In Arthrobacter Globiformis Amine Oxidase Length = 638 Back     alignment and structure
>pdb|1SIH|A Chain A, Agao In Covalent Complex With The Inhibitor Moba ("4-(4- Methylphenoxy)-2-Butyn-1-Amine") Length = 646 Back     alignment and structure
>pdb|2E2U|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase From Arthrobacter Globiformis Formed With 4-Hydroxybenzylhydrazine Length = 628 Back     alignment and structure
>pdb|2CWT|A Chain A, Catalytic Base Deletion In Copper Amine Oxidase From Arthrobacter Globiformis Length = 638 Back     alignment and structure
>pdb|1UI8|A Chain A, Site-directed Mutagenesis Of His592 Involved In Binding Of Copper Ion In Arthrobacter Globiformis Amine Oxidase Length = 638 Back     alignment and structure
>pdb|1EKM|A Chain A, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted Copper Amine Oxidase Of Hansenula Polymorpha Expressed In Escherichia Coli Length = 656 Back     alignment and structure
>pdb|1A2V|A Chain A, Copper Amine Oxidase From Hansenula Polymorpha Length = 655 Back     alignment and structure
>pdb|3SX1|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo Form Length = 692 Back     alignment and structure
>pdb|3N9H|A Chain A, Crystal Structural Of Mutant Y305a In The Copper Amine Oxidase From Hansenula Polymorpha Length = 692 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query257
1ksi_A 642 Copper amine oxidase; PEA seedling, oxidoreductase 5e-61
1w6g_A 646 Phenylethylamine oxidase; copper containing, metal 2e-42
1spu_A 727 Copper amine oxidase; oxidoreductase, TPQ, peripla 2e-40
3sxx_A 692 Peroxisomal primary amine oxidase; oxidoreductase, 2e-40
3loy_A 633 Copper amine oxidase; TPQ, oxidoreductase; HET: TP 5e-39
1w7c_A 747 Lysyl oxidase; AMNE oxidase, copper, oxidoreductas 1e-23
3pgb_A 797 Putative uncharacterized protein; oxidoreductase, 5e-23
1tu5_A 746 Copper amine oxidase, liver isozyme; oxidoreductas 5e-23
3hi7_A 731 Amiloride-sensitive amine oxidase; oxidoreductase, 2e-19
>1ksi_A Copper amine oxidase; PEA seedling, oxidoreductase; HET: TPQ NAG; 2.20A {Pisum sativum} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w2z_A* Length = 642 Back     alignment and structure
 Score =  202 bits (513), Expect = 5e-61
 Identities = 105/232 (45%), Positives = 145/232 (62%), Gaps = 1/232 (0%)

Query: 26  HPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTTNPPRQA 85
           HPLD LT  EF  +++IV   YP S + L F Y+GL++  K  VL +  + T  + PR+ 
Sbjct: 3   HPLDPLTKEEFLAVQTIVQNKYPISNNRLAFHYIGLDDPEKDHVLRYETHPTLVSIPRKI 62

Query: 86  FVVARIDHQTHEIIVDLSLQEITSKKTYNGYGYPLLTEEEQEDANKLASTYPLFVASISK 145
           FVVA I+ QTHEI+++L ++ I S   +NGYG+P+L+ +EQ  A KL   YP F+ S+ K
Sbjct: 63  FVVAIINSQTHEILINLRIRSIVSDNIHNGYGFPILSVDEQSLAIKLPLKYPPFIDSVKK 122

Query: 146 RGLKLEEVECGSFTLGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDPDEMKI 205
           RGL L E+ C SFT+GWFGEE+ N R V++ C+  + T+N  +RPI GIT+  D D MKI
Sbjct: 123 RGLNLSEIVCSSFTMGWFGEEK-NVRTVRLDCFMKESTVNIYVRPITGITIVADLDLMKI 181

Query: 206 IQFRDRITVLVPKGDGTEYRESKLKPPFRPSLKRTTVVQPDRPSFNIVGSQI 257
           +++ DR    VP  + TEY+ SK  PPF P     T  QP  P F I G  +
Sbjct: 182 VEYHDRDIEAVPTAENTEYQVSKQSPPFGPKQHSLTSHQPQGPGFQINGHSV 233
>1w6g_A Phenylethylamine oxidase; copper containing, metal-binding, oxidoreductase, TPQ, quinone, holoenzyme; HET: TPQ GOL; 1.55A {Arthrobacter globiformis} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w6c_A* 1rjo_A* 2bt3_A* 2cfd_A* 2cfg_A* 2cfk_A* 2cfl_A* 2cfw_A* 2cg0_A* 2cg1_A* 1w4n_A* 1sih_A* 1sii_A* 1w5z_A* 3kii_A* 3kn4_A* 1iqy_A* 1avl_A* 1av4_A* 1iqx_A* ... Length = 646 Back     alignment and structure
>1spu_A Copper amine oxidase; oxidoreductase, TPQ, periplasmic, signal; HET: PAQ; 2.00A {Escherichia coli} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 d.82.1.1 PDB: 1d6y_A* 1d6u_A* 1d6z_A* 2wgq_A 1oac_A* 1dyu_A* 2w0q_A* 2wo0_A* 2wof_A* 2woh_A* 1lvn_A* 1jrq_A* 1qak_A* 1qaf_A* 1qal_A* Length = 727 Back     alignment and structure
>3sxx_A Peroxisomal primary amine oxidase; oxidoreductase, peroxisome; HET: GOL; 1.27A {Pichia angusta} PDB: 3sx1_A* 3t0u_A 3n9h_A* 3nbj_A* 3nbb_A* 2oqe_C* 2oov_C* 2oqe_A* 2oov_A* 1ekm_A 1a2v_A* Length = 692 Back     alignment and structure
>3loy_A Copper amine oxidase; TPQ, oxidoreductase; HET: TPQ TLA; 2.00A {Pichia angusta} Length = 633 Back     alignment and structure
>1w7c_A Lysyl oxidase; AMNE oxidase, copper, oxidoreductase, quinoprotein, topaquinone enzyme, TPQ; HET: BMA NAG TPQ IMD; 1.23A {Pichia pastoris} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1rky_A* 1n9e_A* Length = 747 Back     alignment and structure
>3pgb_A Putative uncharacterized protein; oxidoreductase, copper amine oxidase, CAO, topaquinone, TPQ; HET: TPQ NAG BMA MAN; 2.45A {Emericella nidulans} Length = 797 Back     alignment and structure
>1tu5_A Copper amine oxidase, liver isozyme; oxidoreductase, quinoenzyme, TPQ; HET: TPQ NAG NDG; 2.37A {Bos taurus} PDB: 2pnc_A* 3ala_A* 2y73_A* 1pu4_A* 1us1_A* 2y74_A* 2c10_A* 2c11_A* Length = 746 Back     alignment and structure
>3hi7_A Amiloride-sensitive amine oxidase; oxidoreductase, copper amine oxidase, topaquinone, TPQ, DIAM oxidase, DAO, human, glycoprotein, heparin-binding; HET: TPQ NAG BMA; 1.80A {Homo sapiens} PDB: 3hig_A* 3hii_A* 3k5t_A* 3mph_A* Length = 731 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query257
3sxx_A 692 Peroxisomal primary amine oxidase; oxidoreductase, 100.0
3loy_A 633 Copper amine oxidase; TPQ, oxidoreductase; HET: TP 100.0
1ksi_A 642 Copper amine oxidase; PEA seedling, oxidoreductase 100.0
1spu_A 727 Copper amine oxidase; oxidoreductase, TPQ, peripla 100.0
1w6g_A 646 Phenylethylamine oxidase; copper containing, metal 100.0
1w7c_A 747 Lysyl oxidase; AMNE oxidase, copper, oxidoreductas 100.0
1tu5_A 746 Copper amine oxidase, liver isozyme; oxidoreductas 100.0
3pgb_A 797 Putative uncharacterized protein; oxidoreductase, 99.93
3hi7_A 731 Amiloride-sensitive amine oxidase; oxidoreductase, 99.91
>3sxx_A Peroxisomal primary amine oxidase; oxidoreductase, peroxisome; HET: GOL; 1.27A {Pichia angusta} PDB: 3sx1_A* 3t0u_A 3n9h_A* 3nbj_A* 3nbb_A* 2oqe_C* 2oov_C* 2oqe_A* 2oov_A* 1ekm_A 1a2v_A* Back     alignment and structure
Probab=100.00  E-value=3.6e-63  Score=489.59  Aligned_cols=235  Identities=21%  Similarity=0.351  Sum_probs=213.7

Q ss_pred             hcCCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCCeEEEEEecCCCChHhHHhhhhcCCCCCCCCeEEEEEEe--CCcE
Q 036556           18 FLIPSHQYHPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTTNPPRQAFVVARI--DHQT   95 (257)
Q Consensus        18 ~~~~~~~~HPLdpLs~~EI~~a~~iv~~~~~~~~~~~~F~~I~L~EP~K~~vl~~l~~~~~~~p~R~A~v~~~~--~~~~   95 (257)
                      +..+....|||||||++||++|++||+++++.  .+++|++|+|+||+|++|++|+++. .++|+|+|+|+++.  ++++
T Consensus        15 ~~~~~~~~HPLDpLs~~Ei~~a~~iv~~~~~~--~~~~F~~i~L~EP~K~~v~~~~~~~-~~~p~R~a~v~~~~~~~~~~   91 (692)
T 3sxx_A           15 SAAPARPAHPLDPLSTAEIKAATNTVKSYFAG--KKISFNTVTLREPARKAYIQWKEQG-GPLPPRLAYYVILEAGKPGV   91 (692)
T ss_dssp             CCSCCCCSSTTSCCCHHHHHHHHHHHHHHTTT--SCEEEEEEEEECCCHHHHHHHHHSC-CCCCCCEEEEEEEETTCSSE
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHhhCCC--CCcEEEEEECCCCCHHHHHHHHhcC-CCCCCeEEEEEEEECCCCCE
Confidence            34455567999999999999999999998874  6799999999999999999999874 46789999999998  6899


Q ss_pred             EEEEEeCCCCcEeEeeecCCCCCCCCCHHHHHHHHHHHhhChHHHHHHHHcCCC---CCceEEecccCCCCCCCCCCccE
Q 036556           96 HEIIVDLSLQEITSKKTYNGYGYPLLTEEEQEDANKLASTYPLFVASISKRGLK---LEEVECGSFTLGWFGEERKNKRI  172 (257)
Q Consensus        96 ~E~vVdL~~~~v~~~~~~~~~~~p~~~~~E~~~~e~~~~~~p~v~~a~~~~gl~---~~~V~~dpw~~G~~~~~~~~~Rl  172 (257)
                      +|++|||++++|++|+.+++. ||+++.|||.++|++|++||+|+++|++|||+   +++|+||||++||++..+.++|+
T Consensus        92 ~e~vVdl~~~~v~~~~~~~~~-~p~~~~ee~~~~e~~~~~~p~~~~a~~~rgl~~~~~~~V~~dpw~~G~~~~~~~~~Rl  170 (692)
T 3sxx_A           92 KEGLVDLASLSVIETRALETV-QPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGYDERWGTGKRL  170 (692)
T ss_dssp             EEEEEETTTTEEEEEEEETTC-CCCCCHHHHHTHHHHHHHCHHHHHHHHHTTCCGGGGGGEEEEEEECCCCTTTTTSSCE
T ss_pred             EEEEEECCCCeEEEEEECCCC-cCCcCHHHHHHHHHHHHhCHHHHHHHHHcCCCccccceEEEccccccccCCCCCCceE
Confidence            999999999999999999874 89999999999999999999999999999993   55699999999998875568999


Q ss_pred             EEEEEEEEc-CCCCCCcCCCCCcEEEEeCCCcEEEEEeCCcc-eecCCCCCCCCCCCCCC--CCCCC-CCCCCeeeCCCC
Q 036556          173 VKMMCYYLD-GTLNADMRPIEGITMTVDPDEMKIIQFRDRIT-VLVPKGDGTEYRESKLK--PPFRP-SLKRTTVVQPDR  247 (257)
Q Consensus       173 ~q~~~y~r~-~~~N~Ya~Pl~gl~~vvD~~~~kVi~I~d~~~-~p~p~~~~~~Y~~~~~~--~~~R~-dlKPl~I~QPeG  247 (257)
                      +||+||+|. +++|+|||||| |+++||+++|||++|++.+. .|+|+..++||+|+++.  +++|+ |+||++|+||||
T Consensus       171 ~~~~~y~r~~~~~N~Ya~Pl~-~~~vvD~~~~~vi~id~~~~~~p~~~~~~~~Y~p~~~~~~~~~r~~d~kP~~i~QPeG  249 (692)
T 3sxx_A          171 QQALVYYRSDEDDSQYSHPLD-FCPIVDTEEKKVIFIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEG  249 (692)
T ss_dssp             EEEEEEECSSTTSCGGGCBCS-CEEEEETTTTEEEEEECCSSCCCCCCSCCCCCSHHHHHHHHSSCCCCCCCCEEECTTC
T ss_pred             EEEEEEEecCCCCCcccccce-eEEEEECCCCEEEEEecCCCCCCCCCCCCCCCChHHccccCCCCCCCCCCceecCCCC
Confidence            999999997 58999999999 99999999999999998765 67777777899998864  47899 999999999999


Q ss_pred             CceEEeCccC
Q 036556          248 PSFNIVGSQI  257 (257)
Q Consensus       248 pSF~V~G~~V  257 (257)
                      |||+|+||.|
T Consensus       250 ~sF~v~g~~V  259 (692)
T 3sxx_A          250 VSFKMTGNVM  259 (692)
T ss_dssp             CSCEEETTEE
T ss_pred             CcEEEcCCeE
Confidence            9999999975
>3loy_A Copper amine oxidase; TPQ, oxidoreductase; HET: TPQ TLA; 2.00A {Pichia angusta} Back     alignment and structure
>1ksi_A Copper amine oxidase; PEA seedling, oxidoreductase; HET: TPQ NAG; 2.20A {Pisum sativum} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w2z_A* Back     alignment and structure
>1spu_A Copper amine oxidase; oxidoreductase, TPQ, periplasmic, signal; HET: PAQ; 2.00A {Escherichia coli} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 d.82.1.1 PDB: 1d6y_A* 1d6u_A* 1d6z_A* 2wgq_A 1oac_A* 1dyu_A* 2w0q_A* 2wo0_A* 2wof_A* 2woh_A* 1lvn_A* 1jrq_A* 1qak_A* 1qaf_A* 1qal_A* Back     alignment and structure
>1w6g_A Phenylethylamine oxidase; copper containing, metal-binding, oxidoreductase, TPQ, quinone, holoenzyme; HET: TPQ GOL; 1.55A {Arthrobacter globiformis} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w6c_A* 1rjo_A* 2bt3_A* 2cfd_A* 2cfg_A* 2cfk_A* 2cfl_A* 2cfw_A* 2cg0_A* 2cg1_A* 1w4n_A* 1sih_A* 1sii_A* 1w5z_A* 3kii_A* 3kn4_A* 1iqy_A* 1avl_A* 1av4_A* 1iqx_A* ... Back     alignment and structure
>1w7c_A Lysyl oxidase; AMNE oxidase, copper, oxidoreductase, quinoprotein, topaquinone enzyme, TPQ; HET: BMA NAG TPQ IMD; 1.23A {Pichia pastoris} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1rky_A* 1n9e_A* Back     alignment and structure
>1tu5_A Copper amine oxidase, liver isozyme; oxidoreductase, quinoenzyme, TPQ; HET: TPQ NAG NDG; 2.37A {Bos taurus} PDB: 2pnc_A* 3ala_A* 2y73_A* 1pu4_A* 1us1_A* 2y74_A* 2c10_A* 2c11_A* Back     alignment and structure
>3pgb_A Putative uncharacterized protein; oxidoreductase, copper amine oxidase, CAO, topaquinone, TPQ; HET: TPQ NAG BMA MAN; 2.45A {Emericella nidulans} Back     alignment and structure
>3hi7_A Amiloride-sensitive amine oxidase; oxidoreductase, copper amine oxidase, topaquinone, TPQ, DIAM oxidase, DAO, human, glycoprotein, heparin-binding; HET: TPQ NAG BMA; 1.80A {Homo sapiens} PDB: 3hig_A* 3hii_A* 3k5t_A* 3mph_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 257
d1w2za3108 d.17.2.1 (A:99-206) Copper amine oxidase, domains 5e-39
d1w2za293 d.17.2.1 (A:6-98) Copper amine oxidase, domains 1 2e-32
d1d6za3115 d.17.2.1 (A:186-300) Copper amine oxidase, domains 4e-26
d1d6za295 d.17.2.1 (A:91-185) Copper amine oxidase, domains 4e-26
d1w6ga3115 d.17.2.1 (A:97-211) Copper amine oxidase, domains 6e-26
d2oqea298 d.17.2.1 (A:18-115) Copper amine oxidase, domains 4e-21
d2oqea3121 d.17.2.1 (A:116-236) Copper amine oxidase, domains 4e-19
d1w6ga288 d.17.2.1 (A:9-96) Copper amine oxidase, domains 1 5e-18
d1w2za1 441 b.30.2.1 (A:207-647) Copper amine oxidase, domain 3e-05
>d1w2za3 d.17.2.1 (A:99-206) Copper amine oxidase, domains 1 and 2 {Pea seedling (Pisum sativum) [TaxId: 3888]} Length = 108 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Amine oxidase N-terminal region
family: Amine oxidase N-terminal region
domain: Copper amine oxidase, domains 1 and 2
species: Pea seedling (Pisum sativum) [TaxId: 3888]

 Score =  129 bits (326), Expect = 5e-39
 Identities = 53/109 (48%), Positives = 73/109 (66%), Gaps = 1/109 (0%)

Query: 117 GYPLLTEEEQEDANKLASTYPLFVASISKRGLKLEEVECGSFTLGWFGEERKNKRIVKMM 176
           G+P+L+ +EQ  A KL   YP F+ S+ KRGL L E+ C SFT+GWFGEE KN R V++ 
Sbjct: 1   GFPILSVDEQSLAIKLPLKYPPFIDSVKKRGLNLSEIVCSSFTMGWFGEE-KNVRTVRLD 59

Query: 177 CYYLDGTLNADMRPIEGITMTVDPDEMKIIQFRDRITVLVPKGDGTEYR 225
           C+  + T+N  +RPI GIT+  D D MKI+++ DR    VP  + TEY+
Sbjct: 60  CFMKESTVNIYVRPITGITIVADLDLMKIVEYHDRDIEAVPTAENTEYQ 108
>d1w2za2 d.17.2.1 (A:6-98) Copper amine oxidase, domains 1 and 2 {Pea seedling (Pisum sativum) [TaxId: 3888]} Length = 93 Back     information, alignment and structure
>d1d6za3 d.17.2.1 (A:186-300) Copper amine oxidase, domains 1 and 2 {Escherichia coli [TaxId: 562]} Length = 115 Back     information, alignment and structure
>d1d6za2 d.17.2.1 (A:91-185) Copper amine oxidase, domains 1 and 2 {Escherichia coli [TaxId: 562]} Length = 95 Back     information, alignment and structure
>d1w6ga3 d.17.2.1 (A:97-211) Copper amine oxidase, domains 1 and 2 {Arthrobacter globiformis [TaxId: 1665]} Length = 115 Back     information, alignment and structure
>d2oqea2 d.17.2.1 (A:18-115) Copper amine oxidase, domains 1 and 2 {Yeast (Hansenula polymorpha) [TaxId: 4905]} Length = 98 Back     information, alignment and structure
>d2oqea3 d.17.2.1 (A:116-236) Copper amine oxidase, domains 1 and 2 {Yeast (Hansenula polymorpha) [TaxId: 4905]} Length = 121 Back     information, alignment and structure
>d1w6ga2 d.17.2.1 (A:9-96) Copper amine oxidase, domains 1 and 2 {Arthrobacter globiformis [TaxId: 1665]} Length = 88 Back     information, alignment and structure
>d1w2za1 b.30.2.1 (A:207-647) Copper amine oxidase, domain 3 {Pea seedling (Pisum sativum) [TaxId: 3888]} Length = 441 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query257
d1w2za3108 Copper amine oxidase, domains 1 and 2 {Pea seedlin 100.0
d2oqea3121 Copper amine oxidase, domains 1 and 2 {Yeast (Hans 100.0
d1w6ga3115 Copper amine oxidase, domains 1 and 2 {Arthrobacte 100.0
d1d6za3115 Copper amine oxidase, domains 1 and 2 {Escherichia 100.0
d2oqea298 Copper amine oxidase, domains 1 and 2 {Yeast (Hans 99.95
d1w2za293 Copper amine oxidase, domains 1 and 2 {Pea seedlin 99.95
d1d6za295 Copper amine oxidase, domains 1 and 2 {Escherichia 99.95
d1w6ga288 Copper amine oxidase, domains 1 and 2 {Arthrobacte 99.89
d1w7ca2127 Lysyl oxidase PplO, domains 1 and 2 {Yeast (Pichia 99.28
d1w7ca3146 Lysyl oxidase PplO, domains 1 and 2 {Yeast (Pichia 87.37
>d1w2za3 d.17.2.1 (A:99-206) Copper amine oxidase, domains 1 and 2 {Pea seedling (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Amine oxidase N-terminal region
family: Amine oxidase N-terminal region
domain: Copper amine oxidase, domains 1 and 2
species: Pea seedling (Pisum sativum) [TaxId: 3888]

Probab=100.00  E-value=1.2e-38  Score=248.08  Aligned_cols=108  Identities=48%  Similarity=0.883  Sum_probs=104.0

Q ss_pred             CCCCCCHHHHHHHHHHHhhChHHHHHHHHcCCCCCceEEecccCCCCCCCCCCccEEEEEEEEEcCCCCCCcCCCCCcEE
Q 036556          117 GYPLLTEEEQEDANKLASTYPLFVASISKRGLKLEEVECGSFTLGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGITM  196 (257)
Q Consensus       117 ~~p~~~~~E~~~~e~~~~~~p~v~~a~~~~gl~~~~V~~dpw~~G~~~~~~~~~Rl~q~~~y~r~~~~N~Ya~Pl~gl~~  196 (257)
                      |||++|.+|+.+|+++|++||.|++||+||||++++|+||||++|||+. ++++|++|++||+|++++|+|||||+||++
T Consensus         1 G~P~lt~eE~~~a~~~~~~dp~~~~al~~RGId~~~V~~dpw~~G~~~~-e~~~Rl~~~~~f~r~~~~N~YA~PIeGl~~   79 (108)
T d1w2za3           1 GFPILSVDEQSLAIKLPLKYPPFIDSVKKRGLNLSEIVCSSFTMGWFGE-EKNVRTVRLDCFMKESTVNIYVRPITGITI   79 (108)
T ss_dssp             CBCCCCHHHHHHHTTGGGGCHHHHHHHHHHTCCGGGEEEEEEECCCSSC-SCCCCEEEEEEEECTTCSCGGGSBCCSEEE
T ss_pred             CCCccCHHHHHHHHHHHHhCHHHHHHHHHcCCChhhEEEecccccccCC-CCCceEEEEEEEEecCCCCccccccCccEE
Confidence            5899999999999999999999999999999999999999999999997 679999999999999889999999999999


Q ss_pred             EEeCCCcEEEEEeCCcceecCCCCCCCCC
Q 036556          197 TVDPDEMKIIQFRDRITVLVPKGDGTEYR  225 (257)
Q Consensus       197 vvD~~~~kVi~I~d~~~~p~p~~~~~~Y~  225 (257)
                      +||+++|||++|+|++.+|+|++.+++|+
T Consensus        80 vVDl~~~~Vi~i~D~~~vPiP~~~g~dYr  108 (108)
T d1w2za3          80 VADLDLMKIVEYHDRDIEAVPTAENTEYQ  108 (108)
T ss_dssp             EEETTTTEEEEEEECCCCCCCCCTTCCCC
T ss_pred             EEECCCCEEEEEECCCCccCCCCCCCCCC
Confidence            99999999999999999999999999995
>d2oqea3 d.17.2.1 (A:116-236) Copper amine oxidase, domains 1 and 2 {Yeast (Hansenula polymorpha) [TaxId: 4905]} Back     information, alignment and structure
>d1w6ga3 d.17.2.1 (A:97-211) Copper amine oxidase, domains 1 and 2 {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d1d6za3 d.17.2.1 (A:186-300) Copper amine oxidase, domains 1 and 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2oqea2 d.17.2.1 (A:18-115) Copper amine oxidase, domains 1 and 2 {Yeast (Hansenula polymorpha) [TaxId: 4905]} Back     information, alignment and structure
>d1w2za2 d.17.2.1 (A:6-98) Copper amine oxidase, domains 1 and 2 {Pea seedling (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d1d6za2 d.17.2.1 (A:91-185) Copper amine oxidase, domains 1 and 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w6ga2 d.17.2.1 (A:9-96) Copper amine oxidase, domains 1 and 2 {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d1w7ca2 d.17.2.1 (A:43-169) Lysyl oxidase PplO, domains 1 and 2 {Yeast (Pichia pastoris) [TaxId: 4922]} Back     information, alignment and structure
>d1w7ca3 d.17.2.1 (A:170-315) Lysyl oxidase PplO, domains 1 and 2 {Yeast (Pichia pastoris) [TaxId: 4922]} Back     information, alignment and structure