Citrus Sinensis ID: 036560

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420
Protein Sequence
MGCTSSVYALGRKKKVTIPEVVVYVPAIRIPLQSDLPRALKGVIPKELVDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGLTKKENGLEDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQALPELPNFQLSLRPDNYELPEIDQAWNTEKWEIESQTLKEHLKDCENNTRSDTESE
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEEccccccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcHHHHHHHHHHHcccccHHcccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEcccccccccccccEEEEEEccccccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHEccccccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccHHHHHHHHHcccccccccccccccccccccEEccccccccccccccccccccccccccHHHHccccccccccccccc
Coil and Loop (DISEMBL)
mgctssvyalgrkkkvtipevvvyvpairiplqsdlpralkgvipKELVDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGLTKKENGLEDLVEFKwknlgdygkqeaFVANSWFELLSVVHMMAMLTLsdanslmipkdfsGLAVRVLSSDCKREAVDLLLKASGYLEFCIKNIivhippdikimlpkdlqDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAYqclsgcdmnhgygkkHLWFIKWKFLQAKAAAYYYHGLildkgnepschvSAVCCFLAAEEILAESKKACltfslappttrspplwgAMKHLHQTIPEVASRKSQMYGYLLEEEKALqalpelpnfqlslrpdnyelpeidqawnTEKWEIESQTLKEHLKDcenntrsdtese
Flexible Loop (DISEMBL)
mgctssvyalgrkkkvtipevvVYVPairiplqsdlpralKGVIPKELVDRLTCLRNQIVlvaedtdgsaiTELRRALEEYLTLLIGltkkenglEDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQALPELPNFQLSLRPDNYELPEIDQAWNTEKWEIESQTLKehlkdcenntrsdtese
Low Complexity Region (SEG)
MGCTSSVYALGRKKKVTIPEVVVYVPAIRIPLQSDLPRALKGVIPKELVDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGLTKKENGLEDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQALPELPNFQLSLRPDNYELPEIDQAWNTEKWEIESQTLKEHLKDCENNTRSDTESE
Disordered region (IsUnstruct)
******VYALGRKKKVTIPEVVVYVPAIRIPLQSDLPRALKGVIPKELVDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGLTKKENGLEDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQALPELPNFQLSLRPDNYELPEIDQAWNTEKWEI***********************
Disordered Region (DISOPRED)
*******************EVVVYVPAIRIPLQSDLPRALKGVIPKELVDRLTCLRNQIVLVAEDTD*SAITELRRALEEYLTLLIGLTKKENGLEDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMI******************EAVDLLLKASGYLEFCIKNIIVHI**********DLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQALPELPNFQLSLRPDNYELPEIDQAWNTEKW*************************
Disordered Region (DISEMBL)
MGCTSSVYALGRKKKVTIPEVVVYVPAIRIPLQSDLPRALKGVIPKELVDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGLTKKENGLEDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQALPELPNFQLSLRPDNYELPEIDQAWNTEKWEIESQTLKEHLK*************
Disordered Region (DISPRO)
**********GRKKKVTIPEVVVYVPAIRIPLQSDLPRALKGVIPKELVDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGLTKKENGLEDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFS***VRVLSSDCKREAVDLLLKASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQALPELPNFQLSLRPDNYELPEIDQAWNTEKWEIESQT*******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGCTSSVYALGRKKKVTIPEVVVYVPAIRIPLQSDLPRALKGVIPKELVDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGLTKKENGLEDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQALPELPNFQLSLRPDNYELPEIDQAWNxxxxxxxxxxxxxxxxxxxxxTRSDTESE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	420	2.2.26 [Sep-21-2011]
Q5RDD7	411	BRO1 domain-containing pr	yes	no	0.692	0.708	0.225	5e-05
Q22885	427	BRO1 domain-containing pr	yes	no	0.780	0.768	0.229	0.0002
Q5VW32	411	BRO1 domain-containing pr	yes	no	0.692	0.708	0.222	0.0002

>sp|Q5RDD7|BROX_PONAB BRO1 domain-containing protein BROX OS=Pongo abelii GN=BROX PE=2 SV=1

 Score = 49.3 bits (116), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 140/341 (41%), Gaps = 50/341 (14%)

Query: 74  LRRALEEYLTLLIGL------TKKENGLEDLVEFKWKNLGDYGKQEAFVANSWFELLSVV 127
           ++ A + Y +LL G       + +E+ L  +  FKW +    G+  +   ++ FEL+S+ 
Sbjct: 57  MKNAADSYFSLLQGFINSLDESTQESKLRYIQNFKWTDTLQ-GQVPSAQQDAVFELISMG 115

Query: 128 HMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKNIIVHIPP 187
             +A+     A+ L   ++        ++ D  +E    L  A+G  +   ++   HIP 
Sbjct: 116 FNVALWHTKYASRLAGKEN--------ITEDEAKEVHRSLKIAAGIFKHLKES---HIP- 163

Query: 188 DIKIMLP----KDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYY 243
             K++ P    +DL+  ++EA  IQ   +  E+ +  A++ + A   +   LA E   +Y
Sbjct: 164 --KLITPAEKGRDLESRLIEAYVIQCQAEAQEVTIARAIELKHAP-GLIAALAYETANFY 220

Query: 244 SQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLIL---DKGNEPSCHVSAVC 300
            +A   LS   +   Y  K   ++  K     A AY YHG  L   DK  E      A+ 
Sbjct: 221 QKADHTLSS--LEPAYSAKWRKYLHLKMCFYTAYAYCYHGETLLASDKCGE------AIR 272

Query: 301 CFLAAEEILAESKKACLTF--SLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLE 358
               AE++ A+++  C  +  +  P  T  P      + L   +     +  +  G++  
Sbjct: 273 SLQEAEKLYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGNLVKNTLEKCQRENGFIY- 331

Query: 359 EEKALQALP-ELPNFQLS-----LRPDNYELPEIDQAWNTE 393
                Q +P E P  +L      + P  +E P     W  E
Sbjct: 332 ----FQKIPTEAPQLELKANYGLVEPIPFEFPPTSAQWTPE 368

Pongo abelii (taxid: 9601)

>sp|Q22885|BROX_CAEEL BRO1 domain-containing protein BROX homolog OS=Caenorhabditis elegans GN=B0507.2 PE=3 SV=2

 Score = 47.8 bits (112), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 155/383 (40%), Gaps = 55/383 (14%)

Query: 40  LKGVIPKELVDRLTC---LRNQIVLVAEDTDGSAITELRRALEEYLTLLIG--------- 87
           LKGV+  +   ++     LR   ++       + + E+ +   EYL L  G         
Sbjct: 20  LKGVLTTDTCSKICGELRLRRDKLVSQFKNASNDLEEVTKEFNEYLRLFAGFLIEIQSSM 79

Query: 88  --LTKKENGLED-----LVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANS 140
             L  K+ G ++     L+ FKW N     +    V+++WFE LS++  MAM     A S
Sbjct: 80  VELENKDAGNKNSKLIPLIRFKWGN-SMLPQAATEVSDTWFEALSMIQCMAMWLTKHAAS 138

Query: 141 LMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKNIIVHIPPDIKIMLPKDLQDG 200
            M  KD       V  SD K E +  L +A G  ++ +K+    +    ++    D    
Sbjct: 139 -MAGKD------EVRESDAK-ECLQCLRQAGGMFQY-VKDESSRLSGANEVE-GSDFDPK 188

Query: 201 VLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAYQCLSGCDMNHGYG 260
           V+E   + A  +  E+ +  A++  K    +   LA      +S+A QCL+         
Sbjct: 189 VMETYILTATAEAQEVIVARAIE-MKHDDGLISSLAAVTASIFSKADQCLNNLPDES--- 244

Query: 261 KKHLWFIKW-KFLQAKAA---AYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKAC 316
                F +W ++LQ K     AY +  L   + +E  C  +   C     E     + A 
Sbjct: 245 -----FARWRRYLQLKHHFYLAYAFAFLGQKQLSEDKCGEAVRACKQGIAEYGVAKEMAA 299

Query: 317 LTFSLAPPTTRSPPLWGAMKHL-HQTIPEVASR---KSQMYGYLLEEEKALQALPEL--- 369
           +  +   P TR  P     +HL  + I  + +R   K++     +  +K    +P+L   
Sbjct: 300 MYATATGPGTRIKP----EQHLFFRRIEPLLNRHLEKAERENGFIYHQKVPDEIPQLDVE 355

Query: 370 PNFQLSLRPDNYELPEIDQAWNT 392
             + L+ + D++  P   ++WNT
Sbjct: 356 ATYGLA-KLDSFTYPPPAESWNT 377

Caenorhabditis elegans (taxid: 6239)

>sp|Q5VW32|BROX_HUMAN BRO1 domain-containing protein BROX OS=Homo sapiens GN=BROX PE=1 SV=1

 Score = 47.8 bits (112), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 140/341 (41%), Gaps = 50/341 (14%)

Query: 74  LRRALEEYLTLLIGL------TKKENGLEDLVEFKWKNLGDYGKQEAFVANSWFELLSVV 127
           ++ A + Y +LL G       + +E+ L  +  FKW +    G+  +   ++ FEL+S+ 
Sbjct: 57  MKNAADSYFSLLQGFINSLDESTQESKLRYIQNFKWTDTLQ-GQVPSAQQDAVFELISMG 115

Query: 128 HMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKNIIVHIPP 187
             +A+     A+ L   ++        ++ D  +E    L  A+G  +   ++   H+P 
Sbjct: 116 FNVALWYTKYASRLAGKEN--------ITEDEAKEVHRSLKIAAGIFKHLKES---HLP- 163

Query: 188 DIKIMLP----KDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYY 243
             K++ P    +DL+  ++EA  IQ   +  E+ +  A++ + A   +   LA E   +Y
Sbjct: 164 --KLITPAEKGRDLESRLIEAYVIQCQAEAQEVTIARAIELKHAP-GLIAALAYETANFY 220

Query: 244 SQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLIL---DKGNEPSCHVSAVC 300
            +A   LS   +   Y  K   ++  K     A AY YHG  L   DK  E      A+ 
Sbjct: 221 QKADHTLSS--LEPAYSAKWRKYLHLKMCFYTAYAYCYHGETLLASDKCGE------AIR 272

Query: 301 CFLAAEEILAESKKACLTF--SLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLE 358
               AE++ A+++  C  +  +  P  T  P      + L   +     +  +  G++  
Sbjct: 273 SLQEAEKLYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGNLVKNTLEKCQRENGFIY- 331

Query: 359 EEKALQALP-ELPNFQLS-----LRPDNYELPEIDQAWNTE 393
                Q +P E P  +L      + P  +E P     W  E
Sbjct: 332 ----FQKIPTEAPQLELKANYGLVEPIPFEFPPTSVQWTPE 368

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	420
255543625	416	conserved hypothetical protein [Ricinus	0.988	0.997	0.772	0.0
225451557	419	PREDICTED: BRO1 domain-containing protei	0.988	0.990	0.707	1e-177
356560444	414	PREDICTED: uncharacterized protein LOC10	0.985	1.0	0.703	1e-176
449464248	417	PREDICTED: BRO1 domain-containing protei	0.988	0.995	0.744	1e-176
224060313	433	predicted protein [Populus trichocarpa]	0.990	0.960	0.711	1e-174
357508279	412	BRO1 domain-containing protein BROX [Med	0.971	0.990	0.716	1e-171
147785054	394	hypothetical protein VITISV_043319 [Viti	0.928	0.989	0.664	1e-162
356570233	473	PREDICTED: uncharacterized protein LOC10	0.904	0.803	0.645	1e-154
145357997	401	Endosomal targeting BRO1-like domain-con	0.921	0.965	0.679	1e-150
297811521	403	hypothetical protein ARALYDRAFT_488230 [	0.921	0.960	0.675	1e-150

>gi|255543625|ref|XP_002512875.1| conserved hypothetical protein [Ricinus communis] gi|223547886|gb|EEF49378.1| conserved hypothetical protein [Ricinus communis]

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/417 (77%), Positives = 369/417 (88%), Gaps = 2/417 (0%)

Query: 1   MGCTSSVYALGR-KKKVTIPEVVVYVPAIRIPLQSDLPRALKGVIPKELVDRLTCLRNQI 59
           MGCT+S+YA+GR KKK  IPEVVVY P++R+P QSDL RALKG+IP++LVDRL CLRNQI
Sbjct: 1   MGCTASIYAVGRRKKKACIPEVVVYYPSMRVPAQSDLQRALKGLIPQDLVDRLACLRNQI 60

Query: 60  VLVAEDTDGSAITELRRALEEYLTLLIGLTKKENGLEDLVEFKWKNLGDYGKQEAFVANS 119
            LVAEDTDGSAITELRRALEEYL+LLIGLTKKENGLED +EFKWKNL D G+ E+ VANS
Sbjct: 61  TLVAEDTDGSAITELRRALEEYLSLLIGLTKKENGLEDSIEFKWKNLED-GQHESSVANS 119

Query: 120 WFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIK 179
           WFELLSVVHMMA+LTLS+ANS MIP+D SG  +R LSSDCKR+AVDLLLKA+GYLE C++
Sbjct: 120 WFELLSVVHMMAILTLSEANSSMIPQDRSGSGIRTLSSDCKRDAVDLLLKAAGYLELCVR 179

Query: 180 NIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACEL 239
            ++V IPPD+K    KDLQDGVLEAISIQALGQGTEIQLGLAV+ QKATLSVKRRLACE 
Sbjct: 180 EVLVRIPPDMKKRFSKDLQDGVLEAISIQALGQGTEIQLGLAVESQKATLSVKRRLACEQ 239

Query: 240 LIYYSQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAV 299
           LIY+SQAY CLSGCDMN+  GKK L FIKWKFL++KAAAYYYHGLILDKGNEP+CH+SAV
Sbjct: 240 LIYFSQAYHCLSGCDMNNENGKKRLLFIKWKFLESKAAAYYYHGLILDKGNEPACHISAV 299

Query: 300 CCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEE 359
           CCFLAAE +L ESKKACL+F LA P TRSPP WGAMK LHQ IPEV +RKSQMYGYLLEE
Sbjct: 300 CCFLAAEGLLQESKKACLSFCLAAPVTRSPPPWGAMKQLHQKIPEVVARKSQMYGYLLEE 359

Query: 360 EKALQALPELPNFQLSLRPDNYELPEIDQAWNTEKWEIESQTLKEHLKDCENNTRSD 416
           EKALQALP+LP+FQLSLRPD+Y LPE+D+AW+ E+W+I+SQ+LKEHL D E+   ++
Sbjct: 360 EKALQALPDLPDFQLSLRPDDYVLPEVDEAWDRERWQIQSQSLKEHLNDSEDEIETE 416

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451557|ref|XP_002274410.1| PREDICTED: BRO1 domain-containing protein BROX homolog isoform 1 [Vitis vinifera] gi|296082294|emb|CBI21299.3| unnamed protein product [Vitis vinifera]

 Score =  627 bits (1616), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 297/420 (70%), Positives = 364/420 (86%), Gaps = 5/420 (1%)

Query: 1   MGCTSSV---YALGRKKK-VTIPEVVVYVPAIRIPLQSDLPRALKGVIPKELVDRLTCLR 56
           MGCT+S+   Y +GR+KK ++IPE VV+VP++R+P++SDL R L+G+IP+++ D+L+ LR
Sbjct: 1   MGCTTSISKIYTVGRRKKTISIPETVVFVPSMRVPVRSDLQRTLRGLIPRDVADKLSSLR 60

Query: 57  NQIVLVAEDTDGSAITELRRALEEYLTLLIGLTKKENGLEDLVEFKWKNLGDYGKQEAFV 116
           NQIVLVAE+T GSA+TEL R LEEYL++L+GLTK E GLE+LVEFKWKNL + G QE  V
Sbjct: 61  NQIVLVAEETGGSAVTELMRILEEYLSVLLGLTKNEYGLEELVEFKWKNL-EGGLQETNV 119

Query: 117 ANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEF 176
           ANSWFELLS+VHMMA+LTLS+ANSL+IPKD SG   R +S+D KR+AV+LLLKASGYLEF
Sbjct: 120 ANSWFELLSIVHMMAVLTLSEANSLLIPKDHSGSGERTVSADFKRDAVELLLKASGYLEF 179

Query: 177 CIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLA 236
           C+++++ H+ PDIK   PKDLQ+GVLEA+SIQALGQGTE+QL LAV+ QKATLSVKRRLA
Sbjct: 180 CVRDVLAHLRPDIKRRFPKDLQEGVLEAMSIQALGQGTELQLSLAVESQKATLSVKRRLA 239

Query: 237 CELLIYYSQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHV 296
           CE + Y+SQA+ CLSGCDM+HGYGKKHL FIKWK+L+AKAAAYYYHGLILDKGNEPSCHV
Sbjct: 240 CEQMSYFSQAHYCLSGCDMSHGYGKKHLLFIKWKYLEAKAAAYYYHGLILDKGNEPSCHV 299

Query: 297 SAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYL 356
           SAVCCFLAAEE+LA+SKK  L+F LA P TR+PPL  AMKHLHQ IP++A +KSQMYGYL
Sbjct: 300 SAVCCFLAAEELLADSKKVFLSFCLAVPVTRAPPLCDAMKHLHQKIPDIALKKSQMYGYL 359

Query: 357 LEEEKALQALPELPNFQLSLRPDNYELPEIDQAWNTEKWEIESQTLKEHLKDCENNTRSD 416
           LE+EK+LQ LP+LP FQLSLRPD+Y+LPEI  AWN EKWE + QTLKEHL+D E+ T ++
Sbjct: 360 LEQEKSLQVLPDLPEFQLSLRPDDYQLPEIHPAWNNEKWENQGQTLKEHLRDGEDETETE 419

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560444|ref|XP_003548502.1| PREDICTED: uncharacterized protein LOC100803541 [Glycine max]

 Score =  624 bits (1609), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 294/418 (70%), Positives = 356/418 (85%), Gaps = 4/418 (0%)

Query: 1   MGCTSSVYALGRKKKVTIPEVVVYVPAIRIPLQSDLPRALKGVIPKELVDRLTCLRNQIV 60
           MGCT SVY   RKKK + PEVVV+VP+ RIP+QSDL R LKGVIP++L D+L  LRNQIV
Sbjct: 1   MGCTYSVY---RKKKSSFPEVVVFVPSTRIPVQSDLQRVLKGVIPRDLADKLAALRNQIV 57

Query: 61  LVAEDTDGSAITELRRALEEYLTLLIGLTKKENGLEDLVEFKWKNLGDYGKQEAFVANSW 120
           L+AEDT GSA+TEL+RAL EYL++LIGLTKKE GLE +++FKWKN+ D G+Q++ ++N+W
Sbjct: 58  LIAEDTGGSAVTELQRALNEYLSVLIGLTKKEYGLEGVIDFKWKNIED-GRQDSSISNTW 116

Query: 121 FELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKN 180
           FE+LS VH+M+MLTLS+A+SLMIPKD SG   RV+SSD KREA+DLLLKASGYLEFC+++
Sbjct: 117 FEVLSSVHLMSMLTLSEADSLMIPKDPSGSGFRVVSSDSKREAIDLLLKASGYLEFCVRD 176

Query: 181 IIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELL 240
           ++  IP + K   P DLQ+GVLEAI+IQ LGQGTEIQLGLAV+ QKATLSVKRRLACE L
Sbjct: 177 VLTRIPAETKKTFPHDLQEGVLEAIAIQTLGQGTEIQLGLAVESQKATLSVKRRLACEQL 236

Query: 241 IYYSQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVC 300
           IY+SQAY CLSGCD+N G G+KH+ FIKWKFL++KAAAYYYHGLILDKG+EPS H+ AV 
Sbjct: 237 IYFSQAYHCLSGCDINQGLGRKHIRFIKWKFLESKAAAYYYHGLILDKGSEPSSHIGAVS 296

Query: 301 CFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEE 360
           CFLAAEE+LAESKKACL+F LAPP TR+PP+WGAMK LHQ IPEVASRKSQMYGYL E+E
Sbjct: 297 CFLAAEELLAESKKACLSFCLAPPVTRAPPVWGAMKFLHQKIPEVASRKSQMYGYLWEKE 356

Query: 361 KALQALPELPNFQLSLRPDNYELPEIDQAWNTEKWEIESQTLKEHLKDCENNTRSDTE 418
           K LQ+LP+LP FQLSLRPD+YELPEID AW+++ W+   Q LKEHL+D +    + T+
Sbjct: 357 KGLQSLPDLPEFQLSLRPDDYELPEIDPAWDSKNWKSLGQPLKEHLRDSDETEENPTD 414

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464248|ref|XP_004149841.1| PREDICTED: BRO1 domain-containing protein BROX homolog [Cucumis sativus] gi|449510878|ref|XP_004163796.1| PREDICTED: BRO1 domain-containing protein BROX homolog [Cucumis sativus]

 Score =  622 bits (1604), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 311/418 (74%), Positives = 362/418 (86%), Gaps = 3/418 (0%)

Query: 1   MGCTSSVYALGRKKKVTIPEVVVYVPAIRIPLQSDLPRALKGVIPKELVDRLTCLRNQIV 60
           MGCTSSVYA+GRKKK++IPE+VV+VP++RIP+QSDL R L+G+I K++ DRL+ LRNQIV
Sbjct: 1   MGCTSSVYAVGRKKKLSIPEMVVFVPSMRIPMQSDLQRPLRGLILKDVADRLSSLRNQIV 60

Query: 61  LVAEDTDGSAITELRRALEEYLTLLIGLTKKENGLEDLVEFKWKNLGDYGKQEAFVANSW 120
           LVAEDT GSAITELR ALEEYL++LIGLTKKE   + L+EFKW+NL + G+QE  +AN W
Sbjct: 61  LVAEDTGGSAITELRGALEEYLSVLIGLTKKETIDDGLIEFKWRNLEN-GRQETCIANLW 119

Query: 121 FELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKN 180
           FELLSVVH+MAMLTLS+A+SLMIPKD SG   RV+SSD KR+A+DLLLKASGYL+ CI++
Sbjct: 120 FELLSVVHLMAMLTLSEADSLMIPKDHSGSGSRVVSSDSKRDAIDLLLKASGYLDCCIRD 179

Query: 181 IIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELL 240
           I+V+IP DIK  LP D + GVLEAISIQ LGQGTEIQLGLAV+ Q ATLSVKRRLACE L
Sbjct: 180 ILVYIPFDIKRRLPNDFKPGVLEAISIQTLGQGTEIQLGLAVETQNATLSVKRRLACEQL 239

Query: 241 IYYSQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVC 300
           IY+SQAYQCLS CDM+ GYGKKH+ FIKWKFL++KAAAYYYHGLILDKG+EPSCHVSAVC
Sbjct: 240 IYFSQAYQCLSECDMDRGYGKKHMSFIKWKFLESKAAAYYYHGLILDKGSEPSCHVSAVC 299

Query: 301 CFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEE 360
           CFLAAEE+L ESKKACL+F LA P TR PPLWGAMKHLHQ IPEVASRKSQMYGYLLE+E
Sbjct: 300 CFLAAEELLGESKKACLSFCLASPVTRPPPLWGAMKHLHQKIPEVASRKSQMYGYLLEQE 359

Query: 361 KALQALPELPNFQLSLRPDNYELPEIDQAWNTEKWEIESQT--LKEHLKDCENNTRSD 416
           KALQALPELP FQLSLRP+ Y+LPEID AW+++  E  + T  LKEHL D +  T S+
Sbjct: 360 KALQALPELPEFQLSLRPEEYQLPEIDSAWSSQNCEAYTHTLKLKEHLNDSDYETLSE 417

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060313|ref|XP_002300137.1| predicted protein [Populus trichocarpa] gi|222847395|gb|EEE84942.1| predicted protein [Populus trichocarpa]

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 308/433 (71%), Positives = 357/433 (82%), Gaps = 17/433 (3%)

Query: 1   MGCTSSVYALGRKKKVTIPEVVVYVPAIRIPLQSDLPRALKGVIPKELVDRLTCLRNQIV 60
           MGC++S+YA+G++KK  IPEVVVYVP++RIP QSDL R L+G+I ++LVDRL CLRNQIV
Sbjct: 1   MGCSASMYAVGKRKKTCIPEVVVYVPSMRIPAQSDLQRPLRGLILQDLVDRLACLRNQIV 60

Query: 61  LVAEDTDGSAITELRRALEEYLTLLIGLTKK---ENGLEDLVEFKWKNLGDYGKQEAFVA 117
           LVAEDT GSA+ ELRRALEEYL LLIGLTKK   E+GLE LVEF WKNL D   QE  VA
Sbjct: 61  LVAEDTGGSAVAELRRALEEYLPLLIGLTKKGFKEHGLEGLVEFNWKNLEDGRLQENSVA 120

Query: 118 NSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFC 177
           NSWFELLSV+HM+AML LS+ANSLMIPKD SG  +RV+SSDCKR++VDLLLKASG L FC
Sbjct: 121 NSWFELLSVIHMIAMLNLSEANSLMIPKDHSGSGIRVVSSDCKRDSVDLLLKASGCLVFC 180

Query: 178 IKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLAC 237
           ++ I+ H+PPDIK    +  QDGVLEAISIQALGQGTEIQLGLAV+ QKA+LSVKRRLAC
Sbjct: 181 VREIMAHLPPDIKKKFSEVFQDGVLEAISIQALGQGTEIQLGLAVESQKASLSVKRRLAC 240

Query: 238 ELLIYYSQAYQCLS-GCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHV 296
           E LIY+ QAY CLS   + ++ +GKKHL FIKWKFL+AKAAAYYYHGLILDKG EP+CHV
Sbjct: 241 EQLIYFGQAYHCLSESSNTSNMHGKKHLCFIKWKFLEAKAAAYYYHGLILDKGTEPACHV 300

Query: 297 SAVCCFLAAEEILAESKKACLTFSLAPPTTR-------------SPPLWGAMKHLHQTIP 343
           +AVCCFLAA+ +L+ESKKACLTF L  P TR             SPPLWGAMKHLHQ IP
Sbjct: 301 TAVCCFLAADGLLSESKKACLTFCLTTPVTRLNNICFVILYVRLSPPLWGAMKHLHQKIP 360

Query: 344 EVASRKSQMYGYLLEEEKALQALPELPNFQLSLRPDNYELPEIDQAWNTEKWEIESQTLK 403
           EVA+RKSQMYGYLLEEEKALQA P+LP+FQLSL PD+Y LPEID AW+  K EI+SQ LK
Sbjct: 361 EVAARKSQMYGYLLEEEKALQAPPDLPDFQLSLAPDDYLLPEIDSAWDCNKCEIQSQPLK 420

Query: 404 EHLKDCENNTRSD 416
           EH KD E++T ++
Sbjct: 421 EHPKDSEDDTETE 433

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357508279|ref|XP_003624428.1| BRO1 domain-containing protein BROX [Medicago truncatula] gi|355499443|gb|AES80646.1| BRO1 domain-containing protein BROX [Medicago truncatula]

 Score =  607 bits (1566), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 296/413 (71%), Positives = 345/413 (83%), Gaps = 5/413 (1%)

Query: 1   MGCTSSVYALGRKKKVTIPEVVVYVPAIRIPLQSDLPRALKGVIPKELVDRLTCLRNQIV 60
           MGCT SVY   +KKK + PEVVV  P+IRIP+QSDL RALKG++PK+L D+L+ LRNQIV
Sbjct: 1   MGCTYSVY---KKKKSSFPEVVVLTPSIRIPVQSDLQRALKGLVPKDLADKLSSLRNQIV 57

Query: 61  LVAEDTDGSAITELRRALEEYLTLLIGLTKKENGLEDLVEFKWKNLGDYGKQEAFVANSW 120
           LVAEDTDGSAI ELRRAL EYL++LIGLTKKE GLE L+EFKWKN  + GKQ++ ++N W
Sbjct: 58  LVAEDTDGSAIAELRRALNEYLSVLIGLTKKEYGLEGLIEFKWKNF-EVGKQDSSISNVW 116

Query: 121 FELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKN 180
           FE+LS VH MAMLTLS+A+SLMIPKD S    RV+S+D KREA+DLLLKASGYLEFC++ 
Sbjct: 117 FEVLSCVHFMAMLTLSEADSLMIPKDHSDSGFRVVSADSKREAIDLLLKASGYLEFCVRK 176

Query: 181 IIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELL 240
           I+  IP + K +LP DLQ+GVLEAI+IQALGQGTEIQLGLAVD QKATLSVKRR+ACE L
Sbjct: 177 ILPQIPAETKKILPHDLQEGVLEAIAIQALGQGTEIQLGLAVDSQKATLSVKRRMACEQL 236

Query: 241 IYYSQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVC 300
           IY+SQAY  LS CD N G+GKKHL FIKWKFL++KA AYYYHGLILDKGNEPS H+ AV 
Sbjct: 237 IYFSQAYHSLSECDFNQGHGKKHLRFIKWKFLESKATAYYYHGLILDKGNEPSSHILAVS 296

Query: 301 CFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEE 360
           CFLAAEE+L ESKKACL+F LA P TR+PP+WG MK L+Q IPEVAS+K QMYGYLLE+E
Sbjct: 297 CFLAAEELLQESKKACLSFCLAAPVTRAPPIWGVMKLLNQKIPEVASKKYQMYGYLLEQE 356

Query: 361 KAL-QALPELPNFQLSLRPDNYELPEIDQAWNTEKWEIESQTLKEHLKDCENN 412
           K L QALP+LP FQLSL PD YELPEID AW+++ WE   Q LKEHL+D + N
Sbjct: 357 KGLHQALPDLPEFQLSLHPDEYELPEIDPAWDSKNWETLGQPLKEHLRDSDEN 409

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147785054|emb|CAN77742.1| hypothetical protein VITISV_043319 [Vitis vinifera]

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 279/420 (66%), Positives = 342/420 (81%), Gaps = 30/420 (7%)

Query: 1   MGCTSSV---YALGRKKK-VTIPEVVVYVPAIRIPLQSDLPRALKGVIPKELVDRLTCLR 56
           MGCT+S+   Y +GR+KK ++IPE VV+VP++R+P++SDL R L+G+IP+++ D+L+ LR
Sbjct: 1   MGCTTSISKIYTVGRRKKTISIPETVVFVPSMRVPVRSDLQRTLRGLIPRDVADKLSSLR 60

Query: 57  NQIVLVAEDTDGSAITELRRALEEYLTLLIGLTKKENGLEDLVEFKWKNLGDYGKQEAFV 116
           NQIVLVAE+T                         E GLE+LVEFKWKNL + G QE  V
Sbjct: 61  NQIVLVAEET-------------------------EYGLEELVEFKWKNL-EGGLQETNV 94

Query: 117 ANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEF 176
           ANSWFELLS+VHMMA+LTLS+ANSL+IPKD SG   R +S+D KR+AV+LLLKASGYLEF
Sbjct: 95  ANSWFELLSIVHMMAVLTLSEANSLLIPKDHSGSGERTVSADFKRDAVELLLKASGYLEF 154

Query: 177 CIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLA 236
           C+++++ H+ PDIK   PKDLQ+GVLEA+SIQALGQGTE+QL LAV+ QK TLSVKRRLA
Sbjct: 155 CVRDVLAHLRPDIKRRFPKDLQEGVLEAMSIQALGQGTELQLSLAVESQKVTLSVKRRLA 214

Query: 237 CELLIYYSQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHV 296
           CE + Y+SQA+ CLSGCDM+HGYGKKHL FIKWK+L+AKAAAYYYHGLILDKGNEPSCHV
Sbjct: 215 CEQMSYFSQAHYCLSGCDMSHGYGKKHLLFIKWKYLEAKAAAYYYHGLILDKGNEPSCHV 274

Query: 297 SAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYL 356
           SAVCCFLAAEE+LA+SKK  L+F LA P TR+PPL  AMKHLHQ IP++A +KSQMYGYL
Sbjct: 275 SAVCCFLAAEELLADSKKVFLSFCLAVPVTRAPPLCDAMKHLHQKIPDIALKKSQMYGYL 334

Query: 357 LEEEKALQALPELPNFQLSLRPDNYELPEIDQAWNTEKWEIESQTLKEHLKDCENNTRSD 416
           LE+EK+LQ LP+LP FQLSLRPD+Y+LPEI  AWN EKWE + QTLKEHL+D E+ T ++
Sbjct: 335 LEQEKSLQVLPDLPEFQLSLRPDDYQLPEIHPAWNNEKWENQGQTLKEHLRDGEDETETE 394

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570233|ref|XP_003553294.1| PREDICTED: uncharacterized protein LOC100786306 [Glycine max]

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 270/418 (64%), Positives = 326/418 (77%), Gaps = 38/418 (9%)

Query: 1   MGCTSSVYALGRKKKVTIPEVVVYVPAIRIPLQSDLPRALKGVIPKELVDRLTCLRNQIV 60
           MGCT SVY   RKKK + PEVVV+VP+ RIP+QSDL R +KGVIP++L D+LT LRNQIV
Sbjct: 94  MGCTYSVY---RKKKSSFPEVVVFVPSTRIPVQSDLQRMVKGVIPRDLADKLTSLRNQIV 150

Query: 61  LVAEDTDGSAITELRRALEEYLTLLIGLTKKENGLEDLVEFKWKNLGDYGKQEAFVANSW 120
           L+AEDT GSAI ELRRAL+EYL++LIGLTKKE G E L++FKWKNL D G+Q++ ++N+W
Sbjct: 151 LIAEDTGGSAIAELRRALKEYLSVLIGLTKKEYGPEGLIDFKWKNLED-GRQDSSISNTW 209

Query: 121 FELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKN 180
           FE+LS VH+MAMLTLSDA+SLMIPKD SG   RV+SSD KREA+DLLLKASGYLEFC+++
Sbjct: 210 FEVLSSVHLMAMLTLSDADSLMIPKDPSGSGFRVVSSDSKREAIDLLLKASGYLEFCVRD 269

Query: 181 IIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELL 240
           ++  IP + K   P DLQ+GVLEAI+IQ LGQGTEIQLGLAV+ QKATLSVKRRLACE L
Sbjct: 270 VLTRIPAETKKTFPHDLQEGVLEAIAIQTLGQGTEIQLGLAVESQKATLSVKRRLACEQL 329

Query: 241 IYYSQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVC 300
           IY++QAY CLSGCD+N G+G+K + FIKWKFL+AKAAAYYYHGLILDKG+EPS H+ +V 
Sbjct: 330 IYFTQAYHCLSGCDINQGHGRKQIRFIKWKFLEAKAAAYYYHGLILDKGSEPSIHIGSVS 389

Query: 301 CFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEE 360
           CFLAAEE+LAESKKACL+F LAPP TR                                 
Sbjct: 390 CFLAAEELLAESKKACLSFCLAPPVTR--------------------------------- 416

Query: 361 KALQALPELPNFQLSLRPDNYELPEIDQAWNTEKWEIESQTLKEHLKDCENNTRSDTE 418
             LQ+LP+LP FQLSLRPD+YELPEID AW++E WE   Q LKEHL+D + +  + T+
Sbjct: 417 -GLQSLPDLPEFQLSLRPDDYELPEIDPAWDSENWESLGQPLKEHLRDSDEHDENPTD 473

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145357997|ref|NP_196906.3| Endosomal targeting BRO1-like domain-containing protein [Arabidopsis thaliana] gi|110735813|dbj|BAE99883.1| hypothetical protein [Arabidopsis thaliana] gi|332004592|gb|AED91975.1| Endosomal targeting BRO1-like domain-containing protein [Arabidopsis thaliana]

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 269/396 (67%), Positives = 318/396 (80%), Gaps = 9/396 (2%)

Query: 1   MGCTSSVYAL-GRK-KKVTIPEVVVYVPAIRIPLQSDLPRALKGVIPKELVDRLTCLRNQ 58
           MGC  S  A+ GRK KK  I E VV+V   R+P+QSDL R LKGV PK  ++RLTCLRNQ
Sbjct: 1   MGCAQSTIAVVGRKNKKRIIQESVVFVLQFRVPVQSDLQRQLKGVSPKTTINRLTCLRNQ 60

Query: 59  IVLVAEDTDGSAITELRRALEEYLTLLIGLTKK-ENGLEDLVEFKWKNLGDYGKQEAFVA 117
           I LVAEDT GSAI+ELR ALEEYL+LL GL KK ++G+E  VE KW+ LGD  + E    
Sbjct: 61  IELVAEDTGGSAISELRTALEEYLSLLSGLIKKSKDGMEGCVELKWRTLGDGRRAEICCT 120

Query: 118 NSWFELLSVVHMMAMLTLSDANSLMIPKDF----SGLAVRVLSSDCKREAVDLLLKASGY 173
           N W E+L V+HMMA L L++ANSLMIPKD     SG  VRV+S+DC+R+AVDLLLKASGY
Sbjct: 121 NLWMEMLIVIHMMAALALTEANSLMIPKDCYASGSGNGVRVVSTDCRRDAVDLLLKASGY 180

Query: 174 LEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKR 233
           LEFC++ I+  +P DIK  LP D+Q+ VL+ +SIQALGQGTEIQLGLAVD QKATLSVKR
Sbjct: 181 LEFCVREILTQLPHDIKSKLPDDMQESVLQTLSIQALGQGTEIQLGLAVDSQKATLSVKR 240

Query: 234 RLACELLIYYSQAYQCLSGCD-MNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEP 292
           R+ACE +IY++QAY CLS C+ ++HG  KK L FI WKFL+AKAAAYYYHGL+ DKG+EP
Sbjct: 241 RIACEQVIYFTQAYHCLSSCEAVSHGCAKKLLRFIYWKFLEAKAAAYYYHGLVTDKGSEP 300

Query: 293 SCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQM 352
           +CH+SAVCCFLAA EIL ESKKACL+F LAPP TR+PP+WG MKHL Q IPEVA RKSQ 
Sbjct: 301 ACHLSAVCCFLAAAEILGESKKACLSFCLAPPVTRAPPMWGVMKHLSQKIPEVAFRKSQT 360

Query: 353 YGYLL-EEEKALQALPELPNFQLSLRPDNYELPEID 387
           YGYLL EEEKA+Q LPELP+FQLSLRPD++ELPEI+
Sbjct: 361 YGYLLEEEEKAMQCLPELPDFQLSLRPDDFELPEIE 396

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811521|ref|XP_002873644.1| hypothetical protein ARALYDRAFT_488230 [Arabidopsis lyrata subsp. lyrata] gi|297319481|gb|EFH49903.1| hypothetical protein ARALYDRAFT_488230 [Arabidopsis lyrata subsp. lyrata]

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 269/398 (67%), Positives = 318/398 (79%), Gaps = 11/398 (2%)

Query: 1   MGCTSSVYAL-GRK-KKVTIPEVVVYVPAIRIPLQSDLPRALKGVIPKELVDRLTCLRNQ 58
           MGC +S  A+ GRK KK  I E VV+V   R+P+QSDL R LKGV PK  +DRL+CLRNQ
Sbjct: 1   MGCATSTNAVVGRKNKKRIIQESVVFVLQFRVPVQSDLQRQLKGVAPKTTIDRLSCLRNQ 60

Query: 59  IVLVAEDTDGSAITELRRALEEYLTLLIGLTK---KENGLEDLVEFKWKNLGDYGKQEAF 115
           I LVAEDT GSAI+ELR ALEEYL LL GL K   + +G E  VEFKW+ LGD  ++E  
Sbjct: 61  IELVAEDTGGSAISELRTALEEYLCLLTGLIKNSSENDGTEGCVEFKWRTLGDGPREEIC 120

Query: 116 VANSWFELLSVVHMMAMLTLSDANSLMIPKDF----SGLAVRVLSSDCKREAVDLLLKAS 171
             N W E+L V+HMMA L L++ANSLMIPK+     SG  VRV+S+DC+R+AVDLLLKAS
Sbjct: 121 CTNLWMEMLIVIHMMAALALTEANSLMIPKNCYASGSGNGVRVVSTDCRRDAVDLLLKAS 180

Query: 172 GYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSV 231
           GYLEFC + I+  +PPDIK  LP D+Q+ VL+ +SIQALGQGTEIQLGLAVD QKATLSV
Sbjct: 181 GYLEFCDREILTQLPPDIKNKLPDDMQESVLQTLSIQALGQGTEIQLGLAVDSQKATLSV 240

Query: 232 KRRLACELLIYYSQAYQCLSGCD-MNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGN 290
           KRR+ACE +IY++QAY CLS C+ ++HG  KK L FI WKFL+AKAAAYYYHGL+ DKG+
Sbjct: 241 KRRIACEQVIYFTQAYHCLSSCEAVSHGCAKKLLRFIYWKFLEAKAAAYYYHGLVTDKGS 300

Query: 291 EPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKS 350
           EP+CHVSAVCCFLAA EIL ESKKACL+F LAPP TR+PP+WG MKHL Q IPEVA RKS
Sbjct: 301 EPACHVSAVCCFLAAAEILGESKKACLSFCLAPPVTRAPPMWGVMKHLSQKIPEVAFRKS 360

Query: 351 QMYGYLL-EEEKALQALPELPNFQLSLRPDNYELPEID 387
           Q YGYLL EEEKA+Q LPELP+FQLSLRPD++ELPE++
Sbjct: 361 QTYGYLLEEEEKAMQCLPELPDFQLSLRPDDFELPEME 398

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	420
TAIR|locus:2159103	401	AT5G14020 [Arabidopsis thalian	0.921	0.965	0.679	1.5e-138
TAIR|locus:2206845	419	AT1G73390 "AT1G73390" [Arabido	0.928	0.930	0.432	2.6e-86
TAIR|locus:2030893	405	AT1G17940 "AT1G17940" [Arabido	0.911	0.945	0.433	2.2e-82
UNIPROTKB|Q5VW32	411	BROX "BRO1 domain-containing p	0.866	0.885	0.227	1.3e-06
RGD|1307161	411	Brox "BRO1 domain and CAAX mot	0.811	0.829	0.230	2.7e-06
MGI|MGI:1918928	411	Brox "BRO1 domain and CAAX mot	0.811	0.829	0.227	7.6e-06
ZFIN|ZDB-GENE-041114-137	411	brox "BRO1 domain and CAAX mot	0.864	0.883	0.237	2.1e-05

TAIR|locus:2159103 AT5G14020 [Arabidopsis thaliana (taxid:3702)]

 Score = 1356 (482.4 bits), Expect = 1.5e-138, P = 1.5e-138
 Identities = 269/396 (67%), Positives = 318/396 (80%)

Query:     1 MGCTSSVYAL-GRK-KKVTIPEVVVYVPAIRIPLQSDLPRALKGVIPKELVDRLTCLRNQ 58
             MGC  S  A+ GRK KK  I E VV+V   R+P+QSDL R LKGV PK  ++RLTCLRNQ
Sbjct:     1 MGCAQSTIAVVGRKNKKRIIQESVVFVLQFRVPVQSDLQRQLKGVSPKTTINRLTCLRNQ 60

Query:    59 IVLVAEDTDGSAITELRRALEEYLTLLIGLTKK-ENGLEDLVEFKWKNLGDYGKQEAFVA 117
             I LVAEDT GSAI+ELR ALEEYL+LL GL KK ++G+E  VE KW+ LGD  + E    
Sbjct:    61 IELVAEDTGGSAISELRTALEEYLSLLSGLIKKSKDGMEGCVELKWRTLGDGRRAEICCT 120

Query:   118 NSWFELLSVVHMMAMLTLSDANSLMIPKDF----SGLAVRVLSSDCKREAVDLLLKASGY 173
             N W E+L V+HMMA L L++ANSLMIPKD     SG  VRV+S+DC+R+AVDLLLKASGY
Sbjct:   121 NLWMEMLIVIHMMAALALTEANSLMIPKDCYASGSGNGVRVVSTDCRRDAVDLLLKASGY 180

Query:   174 LEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKR 233
             LEFC++ I+  +P DIK  LP D+Q+ VL+ +SIQALGQGTEIQLGLAVD QKATLSVKR
Sbjct:   181 LEFCVREILTQLPHDIKSKLPDDMQESVLQTLSIQALGQGTEIQLGLAVDSQKATLSVKR 240

Query:   234 RLACELLIYYSQAYQCLSGCD-MNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEP 292
             R+ACE +IY++QAY CLS C+ ++HG  KK L FI WKFL+AKAAAYYYHGL+ DKG+EP
Sbjct:   241 RIACEQVIYFTQAYHCLSSCEAVSHGCAKKLLRFIYWKFLEAKAAAYYYHGLVTDKGSEP 300

Query:   293 SCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQM 352
             +CH+SAVCCFLAA EIL ESKKACL+F LAPP TR+PP+WG MKHL Q IPEVA RKSQ 
Sbjct:   301 ACHLSAVCCFLAAAEILGESKKACLSFCLAPPVTRAPPMWGVMKHLSQKIPEVAFRKSQT 360

Query:   353 YGYLLEEE-KALQALPELPNFQLSLRPDNYELPEID 387
             YGYLLEEE KA+Q LPELP+FQLSLRPD++ELPEI+
Sbjct:   361 YGYLLEEEEKAMQCLPELPDFQLSLRPDDFELPEIE 396

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2206845 AT1G73390 "AT1G73390" [Arabidopsis thaliana (taxid:3702)]

 Score = 863 (308.9 bits), Expect = 2.6e-86, P = 2.6e-86
 Identities = 176/407 (43%), Positives = 265/407 (65%)

Query:     1 MGCTSS-VYALG--RKKKVTIPEVVVYVPAIRIPLQSDLPRALKGVIPKELVDRLTCLRN 57
             MGC +S     G  R+K  +I +V VYVP +RIP   +  ++L   +PK LV+RLT LR 
Sbjct:     1 MGCFASRPNDTGGNRRKPTSIGDVSVYVPGLRIPKPVEFSQSLGDQLPKTLVERLTALRT 60

Query:    58 QIVLVAEDTD-------------GSAITELRRALEEYLTLLIGLTKKENGLEDLVEFKWK 104
             +IV++A                 GS + +L  ALE+Y+ +L+GLTK  + L+  V+F W 
Sbjct:    61 RIVVMANQEGPTITRTRRKTQHGGSTLADLHHALEDYIPVLLGLTKDGSHLQFKVQFNWV 120

Query:   105 NLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAV 164
             N  D  ++E  ++N W+E+LSV+H+MAML +S AN L++P+  S      +S + +R ++
Sbjct:   121 NQEDE-EEETAMSNVWYEILSVLHLMAMLQMSQANLLLLPRGSSDGYHPKISEENRRASI 179

Query:   165 DLLLKASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDC 224
             D+ LKA+GYL+  +K+++ H   + +  LP DL +G L A+ +QALGQG +IQLG+A+D 
Sbjct:   180 DIFLKAAGYLDCAVKHVLPHFSTEQRRSLPIDLAEGALRALCLQALGQGVDIQLGMAIDS 239

Query:   225 QKATLSVKRRLACELLIYYSQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGL 284
              KATL+VKRRL+CE++ Y+ QA   L    + +G+G+KH+ F+KWK+++AKAAAYYYHGL
Sbjct:   240 AKATLAVKRRLSCEMVKYWQQAQDNLMNLPLANGWGEKHMLFVKWKYVEAKAAAYYYHGL 299

Query:   285 ILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPE 344
             ILD+GN    H  AV    AA+E L ESKKA   F+ + PT+R+P L+G MK+L + IP+
Sbjct:   300 ILDEGNTEKSHGMAVAALQAADECLKESKKASEAFNTSSPTSRTPSLFGTMKYLSEKIPK 359

Query:   345 VASRKSQMYGYLLEEEKALQALPELPNFQLSLRPDNYELPEIDQAWN 391
               S K ++   L   EK ++  P LP+F L+L+PD Y+LP +D +W+
Sbjct:   360 ETSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEYQLPSVDASWS 406

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2030893 AT1G17940 "AT1G17940" [Arabidopsis thaliana (taxid:3702)]

 Score = 826 (295.8 bits), Expect = 2.2e-82, P = 2.2e-82
 Identities = 174/401 (43%), Positives = 258/401 (64%)

Query:     1 MGCTSSV---YALGRKKKVTIPEVVVYVPAIRIPLQSDLPRALKGVIPKELVDRLTCLRN 57
             MGC +S        R+K  +I EV VYVP +RIP   D  ++L   +PK LV+RLT LR 
Sbjct:     1 MGCFASTPKDSGGNRRKPTSIGEVSVYVPGLRIPRAVDFLQSLGDQLPKTLVERLTALRT 60

Query:    58 QIVLVAEDTD-------------GSAITELRRALEEYLTLLIGLTKKENGLEDLVEFKWK 104
             +IV++A                 GS + +L +AL +YL +++GLTK  + L+  V+F W 
Sbjct:    61 RIVVMANQEGPTITRTRRKTQHGGSTLLDLHQALLDYLPVVLGLTKDGSHLQFKVQFNWV 120

Query:   105 NLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFS-GLAVRVLSSDCKREA 163
             N  D  ++E  ++N W+E+LSV+H+MAML +S AN L++P+  S G     +S + +R +
Sbjct:   121 NQEDE-EEETEMSNVWYEVLSVLHLMAMLQMSQANLLLLPRGSSDGHNHPKVSEENRRTS 179

Query:   164 VDLLLKASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVD 223
             +D+ LKA+GYL+  +K+++     + +  LP DL +G L A+ +QALGQG +IQLG+A+D
Sbjct:   180 IDIFLKAAGYLDCAVKHVLPQFSAEQRRSLPVDLAEGTLRALCLQALGQGVDIQLGMAID 239

Query:   224 CQKATLSVKRRLACELLIYYSQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHG 283
               KATL+VKRRL+CE++ Y+ QA   L    + +G+G+KH  F+KWK+++AKAAAYYYHG
Sbjct:   240 SSKATLAVKRRLSCEMVKYWQQAQDNLMNLPLANGWGEKHGLFVKWKYVEAKAAAYYYHG 299

Query:   284 LILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIP 343
             LILD+GN    H  AV    AA+E   ESKKA   F+ + PT+R+PPL+G MK+L + IP
Sbjct:   300 LILDEGNTEKSHGMAVAALQAADECFKESKKASEAFNASAPTSRTPPLFGTMKYLTEKIP 359

Query:   344 EVASRKSQMYGYLLEEEKALQALPELPNFQLSLRPDNYELP 384
             +  S K ++   L   EK ++  P LP+F L+L+PD Y+LP
Sbjct:   360 KDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEYQLP 400

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

UNIPROTKB|Q5VW32 BROX "BRO1 domain-containing protein BROX" [Homo sapiens (taxid:9606)]

 Score = 141 (54.7 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 94/413 (22%), Positives = 177/413 (42%)

Query:    29 RIPLQSDLPRALK--GVIPKELVDRLTC--LRNQIVLVAE-DTDGSAITEL-RRALEEYL 82
             R PL++  P +    GV+      ++ C  LR+    + E  TD S   E+ + A + Y 
Sbjct:     7 RNPLKATAPVSFNYYGVVTGPSASKI-CNDLRSSRARLLELFTDLSCNPEMMKNAADSYF 65

Query:    83 TLLIGL------TKKENGLEDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLS 136
             +LL G       + +E+ L  +  FKW +    G+  +   ++ FEL+S+   +A+    
Sbjct:    66 SLLQGFINSLDESTQESKLRYIQNFKWTDTLQ-GQVPSAQQDAVFELISMGFNVALWYTK 124

Query:   137 DANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKNIIVHIPPDIKIMLP-- 194
              A+ L   ++        ++ D  +E    L  A+G  +   ++   H+P   K++ P  
Sbjct:   125 YASRLAGKEN--------ITEDEAKEVHRSLKIAAGIFKHLKES---HLP---KLITPAE 170

Query:   195 --KDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAYQCLSG 252
               +DL+  ++EA  IQ   +  E+ +  A++ + A   +   LA E   +Y +A   LS 
Sbjct:   171 KGRDLESRLIEAYVIQCQAEAQEVTIARAIELKHAP-GLIAALAYETANFYQKADHTLSS 229

Query:   253 CDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAES 312
               +   Y  K   ++  K     A AY YHG  L   ++  C   A+     AE++ A++
Sbjct:   230 --LEPAYSAKWRKYLHLKMCFYTAYAYCYHGETLLASDK--CG-EAIRSLQEAEKLYAKA 284

Query:   313 KKACLTF--SLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQALPELP 370
             +  C  +  +  P  T  P      + L   +     +  +  G++  ++   +A P+L 
Sbjct:   285 EALCKEYGETKGPGPTVKPSGHLFFRKLGNLVKNTLEKCQRENGFIYFQKIPTEA-PQLE 343

Query:   371 ---NFQLSLRPDNYELPEIDQAWNTEKWEIESQTLKEHLKDCENNTRSDTESE 420
                N+ L + P  +E P     W  E   + +  L +  KD  ++T+   E E
Sbjct:   344 LKANYGL-VEPIPFEFPPTSVQWTPET--LAAFDLTKRPKD--DSTKPKPEEE 391

GO:0016020 "membrane" evidence=IEA

RGD|1307161 Brox "BRO1 domain and CAAX motif containing" [Rattus norvegicus (taxid:10116)]

 Score = 138 (53.6 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 89/386 (23%), Positives = 166/386 (43%)

Query:    29 RIPLQSDLPRALK--GVIPKELVDRLTC--LRNQIVLVAE-DTDGSAITE-LRRALEEYL 82
             R PL++  P +    G+I      ++ C  LR+    + E  TD S   E ++ A + Y 
Sbjct:     7 RNPLKATAPVSFNYYGMITGPPASKI-CNDLRSARTRLLELFTDLSCNPETMKNAADLYF 65

Query:    83 TLL------IGLTKKENGLEDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLS 136
             +LL      +G + +E+ L  +  FKW +    G   +   ++ FEL+S+   +A+    
Sbjct:    66 SLLQGFINSVGDSTQESKLRYIQNFKWTDTLQ-GHVPSAQQDAVFELISMGFNVALWYTK 124

Query:   137 DANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKNIIVHIPPDIKIMLP-- 194
              A+ L   ++        ++ D  +E    L  A+G  +   ++   HIP   K++ P  
Sbjct:   125 YASRLAGKEN--------ITEDEAKEVHRSLKIAAGIFKHLKES---HIP---KLLTPAE 170

Query:   195 --KDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAYQCLSG 252
               +DL+  +++A  IQ   +  E+ +  A++ + A   +   LA E   +Y +A   LS 
Sbjct:   171 KGRDLEARLIDAYIIQCQAEAQEVTIARAIELKHAP-GLIAALAYETASFYQKADHTLSS 229

Query:   253 CDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAES 312
              +  H    +    +K  F  A A  Y YHG  L   ++  C   A+     AE++ AE+
Sbjct:   230 LEPAHSAKWRKYLHLKMCFYTAYA--YCYHGQTLLASDK--CG-EAIRSLQEAEKLYAEA 284

Query:   313 KKACLTF--SLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQALPELP 370
             +  C  +  +  P  T  P      + L   +     +  +  G++  ++   +A P+L 
Sbjct:   285 EALCKEYGETKGPGPTAKPSGHLFFRKLGSLVKNTLDKCQRENGFIYFQKIPTEA-PQLE 343

Query:   371 ---NFQLSLRPDNYELPEIDQAWNTE 393
                N+ L + P  +E P +   W  E
Sbjct:   344 LKANYGL-VEPVPFEFPPMSALWTPE 368

GO:0016020 "membrane" evidence=IEA

MGI|MGI:1918928 Brox "BRO1 domain and CAAX motif containing" [Mus musculus (taxid:10090)]

 Score = 134 (52.2 bits), Expect = 7.6e-06, P = 7.6e-06
 Identities = 88/386 (22%), Positives = 166/386 (43%)

Query:    29 RIPLQSDLPRALK--GVIPKELVDRLTC--LRNQIVLVAE-DTDGSAITE-LRRALEEYL 82
             R PL++  P +    G+I      ++ C  LR+    + E  TD S   E ++ A + Y 
Sbjct:     7 RNPLKATAPVSFNYYGMITGPPASKI-CNDLRSARTRLLELFTDLSCNPETMKNAADLYF 65

Query:    83 TLL------IGLTKKENGLEDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLS 136
             +LL      +G + +E+ L  +  FKW +    G   +   ++ FEL+S+   +A+    
Sbjct:    66 SLLQGFINSVGDSTQESKLRYIQNFKWTDTLQ-GHVPSAQQDAVFELISMGFNVALWYTK 124

Query:   137 DANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKNIIVHIPPDIKIMLP-- 194
              A+ L   ++        ++ D  +E    L  A+G  +   ++   HIP   K++ P  
Sbjct:   125 YASRLAGKEN--------ITEDEAKEVHRSLKIAAGIFKHLKES---HIP---KLLTPAE 170

Query:   195 --KDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAYQCLSG 252
               +DL+  +++A  IQ   +  E+ +  A++ + A   +   LA +   +Y +A   LS 
Sbjct:   171 KGRDLEARLIDAYIIQCQAEAQEVTIARAIELKHAP-GLIAALAYDTASFYQKADHTLSS 229

Query:   253 CDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAES 312
              +  H    +    +K  F  A A  Y YHG  L   ++  C   A+     AE++ AE+
Sbjct:   230 LEPAHSAKWRKYLHLKMCFYTAYA--YCYHGQTLLASDK--CG-EAIRSLQEAEKLYAEA 284

Query:   313 KKACLTF--SLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQALPELP 370
             +  C  +  +  P  T  P      + L   +     +  +  G++  ++   +A P+L 
Sbjct:   285 EALCKEYGETKGPGPTAKPSGHLFFRKLGSLVKNTLDKCQRENGFIYFQKIPTEA-PQLE 343

Query:   371 ---NFQLSLRPDNYELPEIDQAWNTE 393
                N+ L + P  +E P +   W  E
Sbjct:   344 LKANYGL-VEPVPFEFPPMSAHWTPE 368

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

ZFIN|ZDB-GENE-041114-137 brox "BRO1 domain and CAAX motif containing" [Danio rerio (taxid:7955)]

 Score = 130 (50.8 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 98/412 (23%), Positives = 175/412 (42%)

Query:    29 RIPLQSDLPRA--LKGVIPKELVDRLTC--LRN-QIVLVAEDTDGSAITE-LRRALEEYL 82
             R PL++  P +  L GV      +++ C  LR  +  L+   TD +   + L+++ +EY 
Sbjct:     7 RNPLKATAPVSFNLYGVASSPAANKI-CNDLRTARARLLDMFTDATCSPDTLKKSSDEYF 65

Query:    83 TLLIGL------TKKENGLEDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLS 136
              LL G       T +EN L  +  FKW +    G   +   ++ FEL+S+   +A     
Sbjct:    66 ALLQGFILPLDGTTQENKLRFIQNFKWTDTLQ-GNIASAQQDAVFELVSMAFNVA----- 119

Query:   137 DANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKNIIVHIPPDIKIMLP-- 194
                 L   K  S LA +   ++ + + V   LK +  +   +K    HIP   +++ P  
Sbjct:   120 ----LWYTKFASRLAGKENITEEEAKDVHKSLKIAAGIFKTLKE--THIP---RLITPAE 170

Query:   195 --KDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAYQCLSG 252
               +DL+  V++   +Q+  +  E+ +  A++  K   S+   LA E   +Y +A   L+ 
Sbjct:   171 KGRDLEPRVIDTYIVQSQAEAQEVTIARAIEL-KHNASLIAALAFETANFYQKADHTLNT 229

Query:   253 CDMN-HGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAE 311
              D       KK+L  +K  F  A A  + YHG  L  G++  C   A+     AE+  + 
Sbjct:   230 LDPECSSKWKKYLQ-LKQHFYMAYA--HCYHGQTLLAGDK--CG-EAIRSLQEAEKCYSR 283

Query:   312 SKKACLTFSL--APPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQALPEL 369
             ++  C  +     P +T  P      K L   I     +  +  G++   +   +A P L
Sbjct:   284 AEVLCKEYRQMKGPGSTAKPSEQLFFKKLGAVIKNTLEKCQRENGFIYFHKVPAEA-PAL 342

Query:   370 P---NFQLSLRPDNYELPEIDQAWNTEKWEIESQTLKEHLKDCENNTRSDTE 418
                 ++ L+  P  +ELP +      E +     T + H KD +   + + E
Sbjct:   343 ELKASYGLA-EPTAFELPPLSAQCTPEVYATFDLT-RGH-KDDKAKAKPEEE 391


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.135   0.404    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      420       420   0.00083  118 3  11 22  0.39    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  619 (66 KB)
  Total size of DFA:  282 KB (2147 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  34.28u 0.15s 34.43t   Elapsed:  00:00:02
  Total cpu time:  34.29u 0.15s 34.44t   Elapsed:  00:00:02
  Start:  Thu May  9 19:04:01 2013   End:  Thu May  9 19:04:03 2013

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00037923001 SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (419 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	420
cd09034	345	cd09034, BRO1_Alix_like, Protein-interacting Bro1-	2e-77
smart01041	381	smart01041, BRO1, BRO1-like domain	1e-33
pfam03097	374	pfam03097, BRO1, BRO1-like domain	6e-31
cd09243	353	cd09243, BRO1_Brox_like, Protein-interacting Bro1-	7e-09

>gnl|CDD|185761 cd09034, BRO1_Alix_like, Protein-interacting Bro1-like domain of mammalian Alix and related domains

 Score =  243 bits (622), Expect = 2e-77
 Identities = 126/372 (33%), Positives = 178/372 (47%), Gaps = 40/372 (10%)

Query: 14  KKVTIPEVVVYVPAIRIPLQSDLPRALKGVIPKELVDRLTCLRNQIVLVAEDTDGSAITE 73
           KK    +V V +    IP        L+    ++L+++L+ LRN IV   E  + +    
Sbjct: 7   KKTKEVDVKVPLSK-FIPKNYG---ELEATAVEDLIEKLSKLRNNIV--TEQNNDTTCEN 60

Query: 74  LRRALEEYLTLLIGLTKKEN--GLEDLVEFKWKNLGDYGKQEAFVANS-WFELLSVVHMM 130
           L  AL+EYL  L+GL KK     L D VEF W +  D  K     A S  +ELLS++  +
Sbjct: 61  LLEALKEYLPYLLGLEKKLPFQKLRDNVEFTWTDSFDTKK---ESATSLRYELLSILFNL 117

Query: 131 AMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKNIIVHIPPDIK 190
           A L    AN  +I            S +  ++A+  L KA+GY E+  +    H+ P   
Sbjct: 118 AALASQLANEKLITG----------SEEDLKQAIKSLQKAAGYFEYLKE----HVLPLPP 163

Query: 191 IMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAYQCL 250
             LP DL + VL A+S+  L Q  E  L  A + +KA LS+  RLACE   YY +A +CL
Sbjct: 164 DELPVDLTEAVLSALSLIMLAQAQECFLLKAEEDKKAKLSLLARLACEAAKYYEEALKCL 223

Query: 251 SGCD--MNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEI 308
           SG D        KK L F+KWK    KA AYYYHGL LD+ N       A+    AA E+
Sbjct: 224 SGVDLETIKNIPKKWLLFLKWKKCIFKALAYYYHGLKLDEAN---KIGEAIARLQAALEL 280

Query: 309 LAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQA-LP 367
           L ES++ C +F L         +WG +K L + I +   +  +   ++  EE   +  LP
Sbjct: 281 LKESERLCKSFLL--------DVWGNLKKLKEKIEKELEKAERENDFIYFEEVPPEDPLP 332

Query: 368 ELPNFQLSLRPD 379
           E+    L   P 
Sbjct: 333 EIKGALLVKPPP 344

This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 (in the case of Alix, HD-PTP, and Brox) and Snf7 (in the case of yeast Bro1, and Rim20). The single domain protein human Brox, and the isolated Bro1-like domains of Alix, HD-PTP and Rhophilin can bind human immunodeficiency virus type 1 (HIV-1) nucleocapsid. Alix, HD-PTP, Bro1, and Rim20 also have a V-shaped (V) domain, which in the case of Alix, has been shown to be a dimerization domain and to contain a binding site for the retroviral late assembly (L) domain YPXnL motif, which is partially conserved in this superfamily. Alix, HD-PTP and Bro1 also have a proline-rich region (PRR); the Alix PRR binds multiple partners. Rhophilin-1, and -2, in addition to this Bro1-like domain, have an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. HD-PTP is encoded by the PTPN23 gene, a tumor suppressor gene candidate frequently absent in human kidney, breast, lung, and cervical tumors. This protein has a C-terminal, catalytically inactive tyrosine phosphatase domain. Length = 345

>gnl|CDD|214990 smart01041, BRO1, BRO1-like domain

 Score =  129 bits (325), Expect = 1e-33
 Identities = 74/337 (21%), Positives = 121/337 (35%), Gaps = 51/337 (15%)

Query: 28  IRIPL----QSDLPRALKGVIPKEL----------VDRLTCLRNQIVLVAEDTDGSAITE 73
           I +PL    + D  + LK  I +            +  L  LR      + D  G     
Sbjct: 2   IPLPLKETKEVDFSKPLKDYIKETYSEDSSSYEDEIAELNRLRQAARTPSRDESG----- 56

Query: 74  LRRALEEYLTLLIGLTKK--ENGLEDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMA 131
               L +Y   L  L  +      +  + F W +  D G      ++  FE  SV+  + 
Sbjct: 57  -LELLLKYYGQLEALELRFPPPEGQLKLSFTWYDSLDTGVPSTQ-SSLAFEKASVLFNLG 114

Query: 132 MLTLSDANSLMIPKDFSGLAVRV--LSSDCKREAVDLLLKASGYLEFCIKNIIVHIPPDI 189
            L             +S +A      + +  +EA     +A+G   + +K   +H     
Sbjct: 115 AL-------------YSQIAAEQNRDTEEGLKEACKAFQQAAGVFNY-LKENFLHALSTE 160

Query: 190 KIMLPKDLQDGVLEAISIQALGQGTEIQLGLAV-DCQKATLSVKRRLACELLIYYSQAYQ 248
             +   DL    L A+S   L Q  E     A+ D  K   S+  +LA +   YY +A +
Sbjct: 161 PSV---DLSPETLSALSSLMLAQAQECFFEKAILDGMKNKDSLIAKLAAQAAEYYEEALK 217

Query: 249 CLSGCDMNHGYG-KKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEE 307
            L   +   GY  K  +  ++ K    KA A+YY  L L++ N+      A+     A E
Sbjct: 218 ALQTSEPVKGYIPKSWIKLVQVKAHHFKALAHYYQALDLEEANKYGE---AIARLQEALE 274

Query: 308 ILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPE 344
            L E+KK      L     ++  L   +  L   + E
Sbjct: 275 RLKEAKKHLRCKKL----GKADKLQEDLSGLKDVVEE 307

This domain is found in a number proteins including Rhophilin and BRO1. It is known to have a role in endosomal targeting. ESCRT-III subunit Snf7 binds to a conserved hydrophobic patch in the BRO1 domain that is required for protein complex formation and for the protein-sorting function of BRO1. Length = 381

>gnl|CDD|217365 pfam03097, BRO1, BRO1-like domain

 Score =  121 bits (306), Expect = 6e-31
 Identities = 79/327 (24%), Positives = 120/327 (36%), Gaps = 47/327 (14%)

Query: 29  RIPLQSDLPRALKGVIPK----------ELVDRLTCLRNQIVLVAEDTDGSAITELRRAL 78
           +   + DL + LK  I            + +  L  LR   V V    D          L
Sbjct: 7   KETKEVDLSKPLKDYILSTYGEDPSLFEDDLAELNKLRQDAVNVPGSPD----ESGLELL 62

Query: 79  EEYLTLLIGLTKKENGLEDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDA 138
             Y   L  L K+    +  VEF W +  D G      ++  FE  SV+  +A L    A
Sbjct: 63  YRYYGQLEALEKRFPDDQLGVEFTWYDAFDTGSPVT-QSSLAFEKASVLFNLAALYSQIA 121

Query: 139 NSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKNIIVHIPPDIKIMLPKDLQ 198
            S     D           +  + A D   KA+G  E+ +K   +H P         DL 
Sbjct: 122 ASQNRDTD-----------EGLKAACDYFQKAAGAFEY-LKENFLHSPSV-------DLS 162

Query: 199 DGVLEAISIQALGQGTEIQLGLAV-DCQKATLSVKRRLACELLIYYSQAYQCLSGCDMNH 257
              L+ +    L Q  E     A+ D +K +L  K  LA ++   Y +A + L    +  
Sbjct: 163 PETLKFLESLMLAQAQECFFEKAILDGKKDSLIAK--LAAQVSDLYEEALEALQESPVKT 220

Query: 258 GYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACL 317
           G  K+ +  ++ K    KA A+YYH L L++  +   +  A+     A   L E+ K   
Sbjct: 221 GIPKEWIKHVQLKQHYFKALAHYYHALALEEKKK---YGEAIARLQKALSALKEALK--- 274

Query: 318 TFSLAPPTTRSPPLWGAMKHLHQTIPE 344
                 P + S  L   +K L   I E
Sbjct: 275 ----LAPLSSSSELLEDLKGLKDRIKE 297

This domain is found in a number proteins including Rhophilin and BRO1. It is known to have a role in endosomal targeting. ESCRT-III subunit Snf7 binds to a conserved hydrophobic patch in the BRO1 domain that is required for protein complex formation and for the protein-sorting function of BRO1. Length = 374

>gnl|CDD|185766 cd09243, BRO1_Brox_like, Protein-interacting Bro1-like domain of human Brox1 and related proteins

 Score = 56.6 bits (137), Expect = 7e-09
 Identities = 63/236 (26%), Positives = 99/236 (41%), Gaps = 37/236 (15%)

Query: 72  TELRRALEEYLTLLIGL------TKKENGLEDLVEFKWKNLGDYGKQEAFVANSWFELLS 125
             ++ A   YL+LL G         +E+ L  L+ FKW +    G + +   ++ FEL S
Sbjct: 52  DTVKTAFNAYLSLLQGFILALDGKTQESKLRYLINFKWTD-SLLGNEPSVQQDAIFELAS 110

Query: 126 VVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKNIIVHI 185
           ++  +A+     A+ L   +D        ++ D  ++    L  A+G  +F  +N   +I
Sbjct: 111 MLFNVALWYTKHASKLAGKED--------ITEDEAKDVHKSLRTAAGIFQFVKEN---YI 159

Query: 186 PPDIKIMLP-KDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYS 244
           P  I+      DL   VLEA   Q   +  E+ +  A++  K    +   LA E    + 
Sbjct: 160 PKLIEPAEKGSDLDPRVLEAYINQCTAEAQEVTVARAIEL-KHNAGLISALAYETAKLFQ 218

Query: 245 QAYQCLSGCDMNHGYGKKHLWFIKW-KFLQAK-----AAAYYYHG---LILDKGNE 291
           +A   LS  D  +          KW K+LQ K     A AY YHG   L  DK  E
Sbjct: 219 KADDSLSSLDPEY--------SGKWRKYLQLKSVFYLAYAYCYHGETLLAKDKCGE 266

This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (HIV-1) nucleocapsid. In addition to a Bro1-like domain, Brox also has a C-terminal thioester-linkage site for isoprenoid lipids (CaaX motif). This family lacks the V-shaped (V) domain found in many members of the BRO1_Alix_like superfamily. Length = 353

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	420
cd09246	353	BRO1_Alix_like_1 Protein-interacting, N-terminal,	100.0
cd09239	361	BRO1_HD-PTP_like Protein-interacting, N-terminal,	100.0
cd09240	346	BRO1_Alix Protein-interacting, N-terminal, Bro1-li	100.0
cd09241	355	BRO1_ScRim20-like Protein-interacting, N-terminal,	100.0
cd09242	348	BRO1_ScBro1_like Protein-interacting, N-terminal,	100.0
cd09243	353	BRO1_Brox_like Protein-interacting Bro1-like domai	100.0
cd09244	350	BRO1_Rhophilin Protein-interacting Bro1-like domai	100.0
cd09034	345	BRO1_Alix_like Protein-interacting Bro1-like domai	100.0
cd09248	384	BRO1_Rhophilin_1 Protein-interacting Bro1-like dom	100.0
PF03097	377	BRO1: BRO1-like domain; InterPro: IPR004328 The BR	100.0
cd09249	385	BRO1_Rhophilin_2 Protein-interacting Bro1-like dom	100.0
cd09245	413	BRO1_UmRIM23-like Protein-interacting, Bro1-like d	100.0
cd09247	346	BRO1_Alix_like_2 Protein-interacting Bro1-like dom	100.0
KOG2220	714	consensus Predicted signal transduction protein [G	100.0
KOG2220	714	consensus Predicted signal transduction protein [G	98.61

>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily

Probab=100.00  E-value=1.1e-72  Score=570.31  Aligned_cols=324  Identities=20%  Similarity=0.223  Sum_probs=290.9

Q ss_pred             eeeecCCCCCCCCCchHHHhhhhHHHH-----------HHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHhhh
Q 036560           22 VVYVPAIRIPLQSDLPRALKGVIPKEL-----------VDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGLTK   90 (420)
Q Consensus        22 ~l~iPglK~t~~vD~~~~L~~~I~~~y-----------i~~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~qL~~l~~   90 (420)
                      +|.|| +|+|.+|||.+||++||.++|           |.+|++||+++++..+++     ...++.|.+||.||++|+.
T Consensus         1 ~l~ip-~K~t~~vd~~~~L~~~I~~~y~~~~~~~~~~~l~~l~~LR~~~~~~~~~~-----~~~~~~l~~Yy~~L~~l~~   74 (353)
T cd09246           1 MLSIH-RKKTETVDLVSPLRAYISETYSEREAQDAEDDLAELQQLRSEVRTLQEKH-----AASRELLLRYYRALCAVES   74 (353)
T ss_pred             CCCCC-CCcccccchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHhhcCCCCC-----hhHHHHHHHHHHHHHHHHc
Confidence            57899 999999999999999999998           899999999998765432     1227899999999999999


Q ss_pred             ccCCC----CCcceeEeecCCCCCCcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHH
Q 036560           91 KENGL----EDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDL  166 (420)
Q Consensus        91 kfp~~----~~~v~F~W~dsl~~~~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~  166 (420)
                      |||..    +.+|.|+|+|+|++ +.+++++|+.||++|||||+|+| |||+          |+.++|.++||+|+||++
T Consensus        75 rfp~~~~~~~~~v~F~W~d~~~~-~~~~~~~sl~fEka~vlfNiaal-~s~~----------a~~~~~~~~~glK~A~~~  142 (353)
T cd09246          75 RFPISEESGHARVSFSWYDAFRP-HRKATQANVHFEKAAVLFNLGAL-SSQL----------GLQQDRTTAEGIKQACHA  142 (353)
T ss_pred             cCCCCcccccccceeEeeccCCC-CcceeecchHHHHHHHHHHHHHH-HHHH----------HHhcCCCChHHHHHHHHH
Confidence            99953    46899999999988 47899999999999999999999 9999          888999999999999999


Q ss_pred             HHHHhhHHHHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHH
Q 036560          167 LLKASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQA  246 (420)
Q Consensus       167 fq~AAG~F~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~~K~k~sliAkLA~q~~~~Y~~A  246 (420)
                      ||+|||+|+||++++++.+.    ..+++||++++|.+|+.+||||||||+|+||+.++ +++++|||||.||+++|++|
T Consensus       143 fq~AAG~F~~l~e~~~~~~~----~~~s~Dl~~~~l~~l~~lmLAQAQE~~~~Ka~~~~-~k~sliAKLa~qv~~~Y~~a  217 (353)
T cd09246         143 FQAAAGAFAHLRDKVSGKTG----GFRTPDLTAECLGMLESLMLAQAQECFYEKAVADG-KSPAVCSKLAKQARSYYEEA  217 (353)
T ss_pred             HHHHHHHHHHHHHhcccccc----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHH
Confidence            99999999999999987652    35688999999999999999999999999999984 89999999999999999999


Q ss_pred             HHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 036560          247 YQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTT  326 (420)
Q Consensus       247 ~~~l~~~~~~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p~~  326 (420)
                      .+.+++.++.+.+++.|+.|+++|..||+|+||||+|..+.+   +++||++|+||+.|.+.++++.+..+.+.      
T Consensus       218 ~~~l~~~~~~~~~~~~W~~~~~~K~~~f~A~A~~~~a~~~~~---~~k~GeaIa~L~~A~~~l~~a~k~~~~~~------  288 (353)
T cd09246         218 LEALDSPPLKGHFDKSWVAHVQLKAAYFRAEALYRAAKDLHE---KEDIGEEIARLRAASDALAEARKQAKGVN------  288 (353)
T ss_pred             HHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHH---hcchHHHHHHHHHHHHHHHHHHHHhhcCC------
Confidence            999998778888999999999999999999999999999999   99999999999999999999988755321      


Q ss_pred             CCCCchhhhHHHHHhHHhHHHHhhhhcCcccccccccC--CCCCCCccccccCCCC
Q 036560          327 RSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQ--ALPELPNFQLSLRPDN  380 (420)
Q Consensus       327 ~~p~~~~~~k~l~~~i~~~~~~k~r~N~~IY~qe~vp~--~~p~lp~~~l~~~p~~  380 (420)
                       .+.....++.+.+.|.+.+.+++||||+|||+ +||+  ++|+++.-.| ++|.|
T Consensus       289 -~~~~~~~~~~l~~~v~~~l~~aekdNd~IY~~-~VP~~~~Lp~i~~~~~-vk~i~  341 (353)
T cd09246         289 -GDELIEAVSELEQVINELLERAEKENDCVYLD-RVPAPSDLPPLGAASM-VKPAA  341 (353)
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHHHhhhcccccC-CCCCcccCCCCCCccc-ccCCC
Confidence             11355678899999999999999999999998 8886  7777777777 47665

This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro

>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains

Probab=100.00  E-value=1.6e-72  Score=569.89  Aligned_cols=324  Identities=16%  Similarity=0.128  Sum_probs=285.9

Q ss_pred             ceeeecCCCCCCCCCchHHHhhhhHHHH----------HHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHhhh
Q 036560           21 VVVYVPAIRIPLQSDLPRALKGVIPKEL----------VDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGLTK   90 (420)
Q Consensus        21 ~~l~iPglK~t~~vD~~~~L~~~I~~~y----------i~~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~qL~~l~~   90 (420)
                      |||.|| +|+|.+|||..+|++||.++|          +++|++||++++....+    ..+  ++.|.+||.||+.|+.
T Consensus         7 p~l~ip-lK~t~~vd~~~~L~~~I~~~y~~~~~~~~~~l~~l~~LR~~~~~~~~~----~~~--~~~l~~Yy~qL~~l~~   79 (361)
T cd09239           7 PMLWLQ-LKSSGEFTFQPALKKYILENYGEDPELYSEELKSLEQLRQEAVNPPRD----FEG--CSVLKRYYGQLHLLQS   79 (361)
T ss_pred             CccccC-CCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccCCCC----hHH--HHHHHHHHHHHHHHHh
Confidence            689999 999999999999999999999          99999999998764322    122  7899999999999999


Q ss_pred             ccCCC---CCcceeEeecCCCCCCcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHH
Q 036560           91 KENGL---EDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLL  167 (420)
Q Consensus        91 kfp~~---~~~v~F~W~dsl~~~~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~f  167 (420)
                      |||..   ..+|.|+|+|+|++  .+++++|+.||++|||||||+| |||+          |+.++|.++||+|+||.+|
T Consensus        80 rfp~~~~~~~~v~F~W~d~~~~--~~~~~~~l~fEka~vlfNigal-~sq~----------a~~~~r~~~~glK~A~~~f  146 (361)
T cd09239          80 RFPMGAGQEAAVPFTWTDIFSG--SEVTHEDIKFEEASVLYNIGAL-HSQL----------GASDKRDSEEGMKVACTHF  146 (361)
T ss_pred             cCCCCccccccceeeeecccCC--CchhhhhHHHHHHHHHHHHHHH-HHHH----------HHhccCCChHHHHHHHHHH
Confidence            99943   35799999999986  6889999999999999999999 9999          8899999999999999999


Q ss_pred             HHHhhHHHHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHH
Q 036560          168 LKASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAY  247 (420)
Q Consensus       168 q~AAG~F~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~~K~k~sliAkLA~q~~~~Y~~A~  247 (420)
                      |+|||+|+||++++++..       .++||++++|.+|..+||||||||+|+||+.++ +|++||||||+|++++|++|+
T Consensus       147 q~AAG~F~~l~e~~~~~~-------~~~Dl~~~~l~~L~~lmLAQAQEc~~~Kai~d~-~k~sliAKLA~q~~~~Y~~a~  218 (361)
T cd09239         147 QCAAWAFAYLREHYPQVY-------GAVDMSSQLLSFNYSLMLAQAQECLLEKSLLDN-RKSHITAKVSAQVVEYYKEAL  218 (361)
T ss_pred             HHHHHHHHHHHHhccCCC-------CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHHHHH
Confidence            999999999999996421       125999999999999999999999999999985 899999999999999999999


Q ss_pred             HHhhcCC-----CCCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 036560          248 QCLSGCD-----MNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLA  322 (420)
Q Consensus       248 ~~l~~~~-----~~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~  322 (420)
                      +.+.+..     +.+.+.+.|+.|+++|.+||+|+||||+|+.+++   +++||++|+||+.|.+.+++|.+.++.... 
T Consensus       219 ~~l~~~~~~~~~~~~~i~~~W~~~v~~K~~~f~A~A~y~~a~~~~~---~~k~Ge~Ia~L~~A~~~l~~a~~~~~~~~~-  294 (361)
T cd09239         219 RALENWESNSKIILGKIQKEWRKLVQMKIAYYASIAHLHMGKQSEE---QQKMGERVAYYQLANDKLEEAIKNAKGQPD-  294 (361)
T ss_pred             HHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-
Confidence            9998643     3456889999999999999999999999999999   999999999999999999999998764211 


Q ss_pred             CCCCCCCCchhhhHHHHHhHHhHHHHhhhhcCccccccccc--CCCCCCCccccccCCCCCCC
Q 036560          323 PPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKAL--QALPELPNFQLSLRPDNYEL  383 (420)
Q Consensus       323 ~p~~~~p~~~~~~k~l~~~i~~~~~~k~r~N~~IY~qe~vp--~~~p~lp~~~l~~~p~~~~l  383 (420)
                           .-.+...++.+.++|.+++.+++||||||||+ +||  .++|+++...| ++|.||+-
T Consensus       295 -----~~~~~~~~~~l~~~i~~~l~~aekDNd~IYhe-~VP~~~~L~~i~~~~~-vk~~p~~~  350 (361)
T cd09239         295 -----TVNLQEALSFTMDVIGGKRNSAKKENDFIYHE-AVPKLDTLQAVKGANL-VKGIPFSP  350 (361)
T ss_pred             -----chhHHHHHHHHHHHHHHHHHHHhcccCceeec-CCCChhhcCCCcCccc-cccCCCCc
Confidence                 01245678889999999999999999999998 888  67777777777 47765553

This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l

>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains

Probab=100.00  E-value=2.9e-72  Score=566.10  Aligned_cols=322  Identities=19%  Similarity=0.221  Sum_probs=289.1

Q ss_pred             ceeeecCCCCCCCCCchHHHhhhhHHHH------------HHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHh
Q 036560           21 VVVYVPAIRIPLQSDLPRALKGVIPKEL------------VDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGL   88 (420)
Q Consensus        21 ~~l~iPglK~t~~vD~~~~L~~~I~~~y------------i~~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~qL~~l   88 (420)
                      ++|.|| +|+|.+|||.+||++||.++|            |++|+.||++++....+  .+..+  ++.|.+||.||..|
T Consensus         2 ~~l~ip-lK~t~~vd~~~~l~~~I~~~y~~~~~~~~~~~~l~~l~~lR~~~~~~~~~--~~~~~--~~~l~~Yy~qL~~l   76 (346)
T cd09240           2 SFISVP-LKKSSEVDLVKPLEKFIKNTYSSGEEQADYKEAIKELNKLRNNAVCRPLD--KHESS--LELLLRYYDQLCAI   76 (346)
T ss_pred             Ceeecc-CcCCCcCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhhcCCCC--cchhH--HHHHHHHHHHHHHH
Confidence            689999 999999999999999999998            88999999998753322  22222  78999999999999


Q ss_pred             hhccCCC--CCcceeEeecCCCCC-----CcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHH
Q 036560           89 TKKENGL--EDLVEFKWKNLGDYG-----KQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKR  161 (420)
Q Consensus        89 ~~kfp~~--~~~v~F~W~dsl~~~-----~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK  161 (420)
                      +.|||..  +.+|.|+|+|+|+++     +.+++++|+.||++|||||||+| |||+          |+.++|.++||+|
T Consensus        77 ~~rfp~~~~~~~v~F~W~d~~~~~~~~~~~~~~~~~~l~fEka~vlfNiaal-~s~l----------a~~~~~~~~eglK  145 (346)
T cd09240          77 EPKFPFSESQIQVTFTWKDAFDKGSLFGGSKKLALSSLGYEKVCVLFNIAAL-QSQI----------AAEQNLDTDEGLK  145 (346)
T ss_pred             HhcCCCCcccccceeeeecccccccccCCCcccccccHHHHHHHHHHHHHHH-HHHH----------HHHcCCCChHHHH
Confidence            9999943  478999999999853     25689999999999999999999 9999          8889999999999


Q ss_pred             HHHHHHHHHhhHHHHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHH
Q 036560          162 EAVDLLLKASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLI  241 (420)
Q Consensus       162 ~A~~~fq~AAG~F~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~~K~k~sliAkLA~q~~~  241 (420)
                      +||++||+|||+|+||++++++.++    ..+++||++++|.+|+.+||||||||+|+||+.++ +++++|||||.||++
T Consensus       146 ~A~~~fq~AAG~F~~l~e~~~~~~~----~~~s~Dl~~~~l~~l~~lmLAQAQE~~~~Kai~~~-~k~~liAKLa~qv~~  220 (346)
T cd09240         146 LAAKLFQQAAGIFNHLKETVLSALQ----QEPTPDLSPDTLSALSALMLAQAQEVFYLKATRDK-MKDAIIAKLAAQAAD  220 (346)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccc----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc-CchhHHHHHHHHHHH
Confidence            9999999999999999999987653    45788999999999999999999999999999984 899999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccC
Q 036560          242 YYSQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSL  321 (420)
Q Consensus       242 ~Y~~A~~~l~~~~~~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~  321 (420)
                      +|++|.+.+.+..+.+.+++.|..|+++|..||.|+||||+|+.+.+   +++||++|+||+.|.+.++++++.+..+  
T Consensus       221 ~Y~~a~~~l~~~~~~~~~~~~W~~~~~~K~~~f~a~A~y~~a~~~~e---~~k~GeaIa~L~~A~~~~~~a~~~~~~~--  295 (346)
T cd09240         221 YYGDAFKQCQREDVRSLLPKDWIPVLAGKQAYFHALAEYHQSLVAKA---QKKFGEEIARLQHALELIKTAQSRAGEY--  295 (346)
T ss_pred             HHHHHHHHHhcchhccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hchHHHHHHHHHHHHHHHHHHHHHhcch--
Confidence            99999999998888888999999999999999999999999999999   9999999999999999999998875532  


Q ss_pred             CCCCCCCCCchhhhHHHHHhHHhHHHHhhhhcCcccccccccC--CCCCCCccccccCCCCC
Q 036560          322 APPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQ--ALPELPNFQLSLRPDNY  381 (420)
Q Consensus       322 ~~p~~~~p~~~~~~k~l~~~i~~~~~~k~r~N~~IY~qe~vp~--~~p~lp~~~l~~~p~~~  381 (420)
                                 ..++.+.++|.+.+.+++||||+|||+ +||+  ++|+++...| ++|.|+
T Consensus       296 -----------~~~~~l~~~i~~~l~~aekDNd~IY~e-~VP~~~~L~~i~~~~~-vk~~p~  344 (346)
T cd09240         296 -----------VDVKDFAAKISRALTAAKKDNDFIYHD-RVPDVKSLPPIGKAAL-AKPTPV  344 (346)
T ss_pred             -----------hHHHHHHHHHHHHHHHHhhccCeEecc-CCCCchhccCCcCccc-ccCCCC
Confidence                       137789999999999999999999998 8886  7787777777 477653

This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f

>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins

Probab=100.00  E-value=7.6e-72  Score=564.96  Aligned_cols=318  Identities=20%  Similarity=0.236  Sum_probs=286.5

Q ss_pred             ceeeecCCCCCCCCCchHHHhhhhHHHH----------HHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHhhh
Q 036560           21 VVVYVPAIRIPLQSDLPRALKGVIPKEL----------VDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGLTK   90 (420)
Q Consensus        21 ~~l~iPglK~t~~vD~~~~L~~~I~~~y----------i~~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~qL~~l~~   90 (420)
                      ++|.|| +|+|.+|||.++|++||.++|          |++|++||+++++...    +..+  ++.|.+||.||..|+.
T Consensus         1 ~~l~ip-~K~t~~vd~~~~l~~~I~~~y~~~~~~~~~dl~~l~~lR~~~~~~~~----~~~~--~~~l~~Yy~~L~~l~~   73 (355)
T cd09241           1 NLLSIP-FKRTLPVDLKDALRNYISNHYFQTPSSFEDDLAEIDKLRNDAINPEP----SVNG--LSLLKEYYAQLVVLSK   73 (355)
T ss_pred             CcCccC-CCcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhCCCC----ChhH--HHHHHHHHHHHHHHHh
Confidence            478999 999999999999999999998          9999999999987621    2222  8899999999999999


Q ss_pred             ccCCCCCcceeEeecCCCCC-CcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHHHH
Q 036560           91 KENGLEDLVEFKWKNLGDYG-KQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLK  169 (420)
Q Consensus        91 kfp~~~~~v~F~W~dsl~~~-~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~fq~  169 (420)
                      |||  +.+|.|+|+|+|+++ ..+++++|++||++|||||||++ |||+          |..++|.++||+|+||++||+
T Consensus        74 rfp--~~~i~F~W~d~~~~~~~~~~~~~~l~fEka~VLfNigal-~sq~----------a~~~~~~~~~glK~A~~~fq~  140 (355)
T cd09241          74 KFP--DDQLEFTWYPTLGYKSSGPVSLSSLKFERANILYNLGAL-YSQL----------ALSENRYTDEGLKRACSYFQA  140 (355)
T ss_pred             cCC--CcCCceeeecccCCCCCCceeeccHHHHHHHHHHHHHHH-HHHH----------HHHcCCCChHHHHHHHHHHHH
Confidence            999  789999999999984 36899999999999999999999 9999          888999999999999999999


Q ss_pred             HhhHHHHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 036560          170 ASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAYQC  249 (420)
Q Consensus       170 AAG~F~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~~K~k~sliAkLA~q~~~~Y~~A~~~  249 (420)
                      |||+|+||++++++.+      .+++||++++|++|+.+||||||||+|+||+.++ +++++|||||+|++++|++|.+.
T Consensus       141 AAG~F~~l~~~~~~~~------~~s~Dl~~~~l~~L~~lmLAQAQE~~~~Kai~~~-~k~sliAKLa~qv~~~Y~~a~~~  213 (355)
T cd09241         141 SAGCFEYILQHLLPTL------SPPPDLDENTLKALESLMLAQAQECFWQKAISDG-TKDSLIAKLAAQVSDYYQEALKY  213 (355)
T ss_pred             HHHHHHHHHHhccccc------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999997643      3789999999999999999999999999999986 69999999999999999999999


Q ss_pred             hhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 036560          250 LSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSP  329 (420)
Q Consensus       250 l~~~~~~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p~~~~p  329 (420)
                      ++..   +.+++.|..|+++|..||+|+||||+|+.+.+   +++||++|+||+.|.+.++++.+.++.+        .+
T Consensus       214 l~~~---~~i~~~W~~~v~~K~~~f~A~A~y~~a~~~~e---~~k~Ge~Ia~L~~A~~~l~~a~~~~~~~--------~~  279 (355)
T cd09241         214 ANKS---DLIRSDWINHLKVKKHHFKAAAHYRMALVALE---KSKYGEEVARLRVALAACKEALKEARYG--------NK  279 (355)
T ss_pred             HhcC---CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHhhcc--------ch
Confidence            9844   34789999999999999999999999999999   8999999999999999999999987754        23


Q ss_pred             CchhhhHHHHHhHHhHHHHhhhhcCcccccccccC--CCCCCCccccccCCCCC
Q 036560          330 PLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQ--ALPELPNFQLSLRPDNY  381 (420)
Q Consensus       330 ~~~~~~k~l~~~i~~~~~~k~r~N~~IY~qe~vp~--~~p~lp~~~l~~~p~~~  381 (420)
                      .+...++.+.+.|.+++.+++||||+|||+ +||+  ++|+++.-.| ++|.++
T Consensus       280 ~~~~~~~~l~~~i~~~l~~aekdNd~IY~e-~VP~~~~L~~i~~~~~-vk~~~~  331 (355)
T cd09241         280 AVLEDLQGLKDIVKESLKRAERDNDLIYLQ-PVPPASELPPIKPASM-VKAIVP  331 (355)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhccCeeCCc-CCCCcccCCCCCCccc-ccccCc
Confidence            345667889999999999999999999998 8886  7777777666 566543

This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp

>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins

Probab=100.00  E-value=1.2e-71  Score=562.01  Aligned_cols=326  Identities=20%  Similarity=0.202  Sum_probs=288.8

Q ss_pred             eeeecCCCCCCCCCchHHHhhhhHHHH----------HHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHhhhc
Q 036560           22 VVYVPAIRIPLQSDLPRALKGVIPKEL----------VDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGLTKK   91 (420)
Q Consensus        22 ~l~iPglK~t~~vD~~~~L~~~I~~~y----------i~~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~qL~~l~~k   91 (420)
                      +|.|| +|+|.+|||..||++||.++|          |++|++||+++++...+     . ..++.|.+||.||+.|+.|
T Consensus         1 ~l~lp-lK~t~~vd~~~~L~~~I~~~y~~~~~~~~~~l~~l~~lR~~~~~~~~~-----~-~~~~~l~~Yy~qL~~l~~r   73 (348)
T cd09242           1 LISLP-LKDTEEVDWKKPLSSYLKRSYGSSTFYYEEEIAEFDRLRQDANGVLAD-----E-TGRDLLYKYYGQLELLELR   73 (348)
T ss_pred             CCCCC-CCcCCccChHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCC-----H-HHHHHHHHHHHHHHHHHhh
Confidence            57899 999999999999999999998          99999999999764331     1 2278999999999999999


Q ss_pred             cCC--CCCcceeEeecCCCCCCcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHHHH
Q 036560           92 ENG--LEDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLK  169 (420)
Q Consensus        92 fp~--~~~~v~F~W~dsl~~~~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~fq~  169 (420)
                      ||.  .+.+|.|+|+|+|++ ..+++++|++||++|||||+|++ ||++          |..++|.++||+|+||++||+
T Consensus        74 fp~~~~~~~v~F~W~d~~~~-~~~~~~~sl~fEka~VLfNiaal-~s~~----------A~~~~~~~~~~~K~A~~~fq~  141 (348)
T cd09242          74 FPFNNKELKVDFTWYDAFYK-SKKVKQHSLAFEKASVLFNIGAL-LSQL----------AAEKYREDEDDLKEAITNLQQ  141 (348)
T ss_pred             cCCCCccccceeeeeecCCC-CCceeecchHHHHHHHHHHHHHH-HHHH----------HHHhccCChHHHHHHHHHHHH
Confidence            994  357899999999995 48999999999999999999999 9999          888899999999999999999


Q ss_pred             HhhHHHHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhc--ccchhHHHHHHHHHHHHHHHHH
Q 036560          170 ASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQ--KATLSVKRRLACELLIYYSQAY  247 (420)
Q Consensus       170 AAG~F~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~~--K~k~sliAkLA~q~~~~Y~~A~  247 (420)
                      |||+|+||++++++        .|+.||++++|++|+.+||||||||+|+||+.++  ++++++|||||+|++++|++|.
T Consensus       142 AAG~f~~l~e~~~~--------~ps~Dl~~~~l~~L~~lmLAQAQE~~~~Kai~~~~~~~k~sliaKLa~~~~~~Y~~a~  213 (348)
T cd09242         142 AAGCFQYINENFLH--------APSVDLQQENVKFLVKLMLAQAQEIFLLKLINGDDAQKKASLISKLASATANLYESCV  213 (348)
T ss_pred             HHHHHHHHHHhcCC--------CCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHH
Confidence            99999999999853        4788999999999999999999999999999984  3799999999999999999999


Q ss_pred             HHhhcCCC--CCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 036560          248 QCLSGCDM--NHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPT  325 (420)
Q Consensus       248 ~~l~~~~~--~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p~  325 (420)
                      +.+.+...  .+.+++.|+.++++|..||+|+||||+|+.+.+   +++||++|+||+.|.+.++++.+.++.+..+++ 
T Consensus       214 ~~l~~~~~~~~~~~~~~W~~~~~~K~~~f~A~A~y~~a~~~~~---~~k~GeaIa~L~~A~~~l~~a~~~~~~~~~~~~-  289 (348)
T cd09242         214 EFLKEIQEKGISYGDPKWISLVQCKAHYYKSLAAYYHALALEA---AGKYGEAIAYLTQAESILKEANPQKLSLKASAG-  289 (348)
T ss_pred             HHHhccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhHH---hccHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-
Confidence            99987432  335789999999999999999999999999999   899999999999999999999998876643322 


Q ss_pred             CCCCCchhhhHHHHHhHHhHHHHhhhhcCcccccccccC--CCCCCCccccccCCCC
Q 036560          326 TRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQ--ALPELPNFQLSLRPDN  380 (420)
Q Consensus       326 ~~~p~~~~~~k~l~~~i~~~~~~k~r~N~~IY~qe~vp~--~~p~lp~~~l~~~p~~  380 (420)
                      ...+.+...++.+.+.|.+.+.+++||||+|||+ +||+  ++|+++.-.| ++|.|
T Consensus       290 ~~~~~~~~~~~~~~~~v~~~l~~aekDNd~IY~~-~VP~~~~L~~i~~~~~-vk~~p  344 (348)
T cd09242         290 DAAYALNDDFKGQKDTVEEKLKELEKDNDFIYHD-IVPSEVTLPSIKPLDA-AKPIP  344 (348)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhcccCeeccC-CCCCccccCCCCcccc-CCCCC
Confidence            2233466678999999999999999999999998 8886  7777777777 47665

This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the

>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins

Probab=100.00  E-value=1.4e-70  Score=552.22  Aligned_cols=333  Identities=22%  Similarity=0.350  Sum_probs=292.8

Q ss_pred             cCCCCCCCCCchHHHhhhhH----HHHHHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHhhh------ccCCC
Q 036560           26 PAIRIPLQSDLPRALKGVIP----KELVDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGLTK------KENGL   95 (420)
Q Consensus        26 PglK~t~~vD~~~~L~~~I~----~~yi~~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~qL~~l~~------kfp~~   95 (420)
                      | ||.|.+|+|  .++....    +..+.+|..-|.+++.+..++ +++.++|+.+|.+|++.|.||..      ..+++
T Consensus         6 ~-~k~t~~~~f--~~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~-~~~~~~~~~a~~~Yl~ll~g~~~~~d~~~~~~~l   81 (353)
T cd09243           6 P-LKATAPVKF--DLKGVATTPAASKLCSDLRTARARLLELLSDP-SNDVDTVKTAFNAYLSLLQGFILALDGKTQESKL   81 (353)
T ss_pred             c-ccccccccc--ccccccCChhHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhhcccccCCcccc
Confidence            7 999999999  3443333    346999999999999998884 67788999999999999999997      56788


Q ss_pred             CCcceeEeecCCCCCCcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHHHHHhhHHH
Q 036560           96 EDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLE  175 (420)
Q Consensus        96 ~~~v~F~W~dsl~~~~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~fq~AAG~F~  175 (420)
                      +..|.|+|+|+|++ ..+++++|++||++|||||||+| |||+++.+.+      ..+ .++||+|+||++||+|||||+
T Consensus        82 ~~~v~F~W~dsl~~-~~~~~q~sl~fEk~sVLfNigal-~s~~As~~~~------~~~-~s~e~~K~A~~~fq~AAG~F~  152 (353)
T cd09243          82 RYLINFKWTDSLLG-NEPSVQQDAIFELASMLFNVALW-YTKHASKLAG------KED-ITEDEAKDVHKSLRTAAGIFQ  152 (353)
T ss_pred             ceeeeEEEECCCCC-CCceeeccHHHHHHHHHHHHHHH-HHHHHHHHhc------cCC-CCcHHHHHHHHHHHHHHHHHH
Confidence            99999999999975 48999999999999999999999 9988766643      233 455999999999999999999


Q ss_pred             HHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 036560          176 FCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAYQCLSGCDM  255 (420)
Q Consensus       176 ~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~~K~k~sliAkLA~q~~~~Y~~A~~~l~~~~~  255 (420)
                      ||+++++|.+++.  ..|++||++++|++|+.|||||||||+|+|||++ |++++||||||+|+++||++|.+.+.+.  
T Consensus       153 ~l~e~~l~~l~~~--~~p~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~-k~k~sliaKLA~q~a~~Y~~A~~~l~~~--  227 (353)
T cd09243         153 FVKENYIPKLIEP--AEKGSDLDPRVLEAYINQCTAEAQEVTVARAIEL-KHNAGLISALAYETAKLFQKADDSLSSL--  227 (353)
T ss_pred             HHHHhhccccccc--CCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHc-ccchHHHHHHHHHHHHHHHHHHHHHHcC--
Confidence            9999999887532  3478899999999999999999999999999998 5899999999999999999999999864  


Q ss_pred             CCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCC-CCCCCCC-chh
Q 036560          256 NHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAP-PTTRSPP-LWG  333 (420)
Q Consensus       256 ~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~-p~~~~p~-~~~  333 (420)
                      .+.+..+|+.|+++|..||+|+||||+|+.+++   +++||++|+|||.|.++++++++.|++|..+. |++..++ ...
T Consensus       228 ~~~i~~~W~~~v~~K~~~f~A~A~y~~a~~l~e---~~k~GeaIa~L~~A~~~~k~a~~~~k~y~~~~~~~~~~~~~~~~  304 (353)
T cd09243         228 DPEYSGKWRKYLQLKSVFYLAYAYCYHGETLLA---KDKCGEAIRSLQESEKLYNKAEALCKEYAKTKGPGTTAKPDQHL  304 (353)
T ss_pred             CccccHHHHHHHHHHHHHHHHHHHHHHHHHhHh---cchHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccchhhH
Confidence            345788999999999999999999999999999   89999999999999999999999999998763 4333333 334


Q ss_pred             hhHHHHHhHHhHHHHhhhhcCcccccccccCCCCCCC---ccccccCCCCC
Q 036560          334 AMKHLHQTIPEVASRKSQMYGYLLEEEKALQALPELP---NFQLSLRPDNY  381 (420)
Q Consensus       334 ~~k~l~~~i~~~~~~k~r~N~~IY~qe~vp~~~p~lp---~~~l~~~p~~~  381 (420)
                      ..+.+.+.|.+.+.+++||||||||| +||+++|.++   .||| ++|+||
T Consensus       305 ~~~~l~~~I~~~L~~aeKDNdfIYh~-~VP~e~p~~e~k~~~g~-~~~~~~  353 (353)
T cd09243         305 FFRKLGPLVKRTLEKCERENGFIYHQ-KVPDEVPQLELKATYGL-VSPEEF  353 (353)
T ss_pred             HHHHHHHHHHHHHHHHhhhhceeccc-cCCCCCCccccccccCc-cCCCCC
Confidence            57889999999999999999999998 9999999998   5899 799886

This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (

>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains

Probab=100.00  E-value=4.1e-70  Score=547.79  Aligned_cols=301  Identities=17%  Similarity=0.126  Sum_probs=275.0

Q ss_pred             eeeecCCCCCCCCCchHHHhhhhHHHH----------HHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHhhhc
Q 036560           22 VVYVPAIRIPLQSDLPRALKGVIPKEL----------VDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGLTKK   91 (420)
Q Consensus        22 ~l~iPglK~t~~vD~~~~L~~~I~~~y----------i~~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~qL~~l~~k   91 (420)
                      ||.|| ||+|++|||..||++||.++|          |.+|++||++++++..+  .  .+  ++.|.+||.||+.|+.|
T Consensus         1 mi~l~-lK~T~~vd~~~~L~~yI~~~Y~e~~~~y~~~l~~l~~LR~~~~~~~~~--~--~g--~~~L~~YY~qL~~le~R   73 (350)
T cd09244           1 MIPLG-LKETKEIDFMEPFKDFILEHYSEDPSLYEDEIADFTDLRQAMRTPSRD--E--AG--IELLFEYYNQLYFVERR   73 (350)
T ss_pred             CCCCC-CCcCCcCChHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhCCCCC--h--hH--HHHHHHHHHHHHHHHhc
Confidence            57788 999999999999999999999          99999999999875442  1  12  78999999999999999


Q ss_pred             cCCC--CCcceeEeecCCCCCCcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHHHH
Q 036560           92 ENGL--EDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLK  169 (420)
Q Consensus        92 fp~~--~~~v~F~W~dsl~~~~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~fq~  169 (420)
                      ||..  +.+|.|+|+|+|++  .+++|+|+.||++||||||||| |||+          |+.++|.++||+|+||++||+
T Consensus        74 Fp~~~~~~~v~F~W~Ds~~~--~~~~q~sl~fEkasVLFNigAl-~Sq~----------aa~~~r~~~eglK~A~~~Fq~  140 (350)
T cd09244          74 FFPPDRSLGIYFHWYDSLTG--VPSVQRSVAFEKASVLFNIGAL-YTQI----------GAKQDRTTEEGIEAAVDAFQR  140 (350)
T ss_pred             CCCccccccceeeeecccCC--CccccccHHHHHHHHHHHHHHH-HHHH----------HHHhccCChHHHHHHHHHHHH
Confidence            9733  46899999999998  7999999999999999999999 9999          999999999999999999999


Q ss_pred             HhhHHHHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhH-----HHHHHHHHHHHHH
Q 036560          170 ASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSV-----KRRLACELLIYYS  244 (420)
Q Consensus       170 AAG~F~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~~K~k~sl-----iAkLA~q~~~~Y~  244 (420)
                      |||+|+||++++.        +.|++||++++|++|+.+||||||||+|+||+.++.+|+++     |||||+||+++|+
T Consensus       141 AAG~F~~l~e~~~--------~~ps~Dls~~~L~~L~~LmLAQAQEc~~~Kai~d~~~k~~~~~~~~lAklA~qv~~~Y~  212 (350)
T cd09244         141 AAGAFNYLRENFS--------NAPSMDLSPEMLEALIKLMLAQAQECVFEKLVLPGEDSKDIQACLDLAQEAAQVSDCYS  212 (350)
T ss_pred             HHHHHHHHHHhcc--------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHH
Confidence            9999999999984        46789999999999999999999999999999886467777     9999999999999


Q ss_pred             HHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHH---HHhhccC
Q 036560          245 QAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKK---ACLTFSL  321 (420)
Q Consensus       245 ~A~~~l~~~~~~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k---~~~~~~~  321 (420)
                      +|++.+++.++.+.|++.|+.++++|.+||+|+||||+|+.+.+   ++++|++|++|+.|...+++|.+   +|+.+. 
T Consensus       213 ~a~~~~~~~~~~~~i~~~W~~~v~~K~~~f~AlA~y~~a~~l~~---~~~~g~~~a~L~~A~~~~e~a~~~~~~c~~~~-  288 (350)
T cd09244         213 EVHKLMNQEPVKDYIPYSWISLVEVKSEHYKALAHYYAAMGLLL---EERRLLGKAHLKEALLLHEEALRLHRMCRFLR-  288 (350)
T ss_pred             HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-
Confidence            99999998778888999999999999999999999999999999   99999999999999999999999   566553 


Q ss_pred             CCCCCCCCCchhhhHHHHHhHHhHHHHhhhhcCccccc
Q 036560          322 APPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEE  359 (420)
Q Consensus       322 ~~p~~~~p~~~~~~k~l~~~i~~~~~~k~r~N~~IY~q  359 (420)
                           ....+...++..+++++.......+||||+|+.
T Consensus       289 -----~~~~l~~~l~~~~~~~~~~~~~~~~~~d~~~~~  321 (350)
T cd09244         289 -----NVDSLQEVLKEAHDRSLNKYSSLEEEDDFSDAL  321 (350)
T ss_pred             -----chHHHHHHHHHHHHHHHHHHHhhccccchhhcc
Confidence                 233466778999999999999999999999995

This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac

>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains

Probab=100.00  E-value=1.1e-65  Score=517.54  Aligned_cols=321  Identities=36%  Similarity=0.552  Sum_probs=288.4

Q ss_pred             eeeecCCCCCCCCCchHHHhhhhHHHH-----------HHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHhhh
Q 036560           22 VVYVPAIRIPLQSDLPRALKGVIPKEL-----------VDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGLTK   90 (420)
Q Consensus        22 ~l~iPglK~t~~vD~~~~L~~~I~~~y-----------i~~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~qL~~l~~   90 (420)
                      +|.+| ||+|.+|||..+|++||.++|           |+++++||++++....++  ++...++++|.+||++|.+|+.
T Consensus         1 ~i~~p-lk~t~~vd~~~~l~~~i~~~~~~~~~~~~~~~l~~~~~lR~~~~~~~~~~--~~~~~~~~~l~~Y~~~L~~l~~   77 (345)
T cd09034           1 FIGLP-LKKTKEVDVKVPLSKFIPKNYGELEATAVEDLIEKLSKLRNNIVTEQNND--TTCENLLEALKEYLPYLLGLEK   77 (345)
T ss_pred             CCCCC-CCCCceeeechhhHHHhhHhhCcccchhhHHHHHHHHHHHHHHHhhccCC--cchHHHHHHHHHHHHHHHHHHh
Confidence            46789 999999999999999999998           999999999998876542  1345569999999999999999


Q ss_pred             ccC--CCCCcceeEeecCCCCCCcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCC-hhhHHHHHHHH
Q 036560           91 KEN--GLEDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLS-SDCKREAVDLL  167 (420)
Q Consensus        91 kfp--~~~~~v~F~W~dsl~~~~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s-~eglK~A~~~f  167 (420)
                      |||  ..+.+|.|+|+|+++. +.++.. |++||++|||||+|++ ||++          |..+++.+ ++|+|.||++|
T Consensus        78 ~~~~~~~~~~i~F~W~d~~~~-~~~~~~-~l~fE~~~vLfn~aa~-~s~~----------a~~~~~~~~~~~~k~A~~~f  144 (345)
T cd09034          78 KLPFQKLRDNVEFTWTDSFDT-KKESAT-SLRYELLSILFNLAAL-ASQL----------ANEKLITGSEEDLKQAIKSL  144 (345)
T ss_pred             cCCcccccccceeEeecccCC-Ccchhh-hHHHHHHHHHHHHHHH-HHHH----------HHhccCCCchHHHHHHHHHH
Confidence            998  5678999999999996 355555 9999999999999999 9999          88888888 89999999999


Q ss_pred             HHHhhHHHHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHH
Q 036560          168 LKASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAY  247 (420)
Q Consensus       168 q~AAG~F~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~~K~k~sliAkLA~q~~~~Y~~A~  247 (420)
                      |+|||+|+||++++++..+.    .+++||++++|.+|..+||||||||+|+||+.++++++++|||||+|++++|++|.
T Consensus       145 q~AAG~F~~l~~~~~~~~~~----~~~~Dl~~~~l~~l~~l~LAqAQe~~~~ka~~~~~~~~~liakLa~~~~~~y~~A~  220 (345)
T cd09034         145 QKAAGYFEYLKEHVLPLPPD----ELPVDLTEAVLSALSLIMLAQAQECFLLKAEEDKKAKLSLLARLACEAAKYYEEAL  220 (345)
T ss_pred             HHHHHHHHHHHHhccccCCC----CCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999875532    36789999999999999999999999999999855899999999999999999999


Q ss_pred             HHhhcCCCC--CCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 036560          248 QCLSGCDMN--HGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPT  325 (420)
Q Consensus       248 ~~l~~~~~~--~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p~  325 (420)
                      +.+++.+..  ++|+.+|..|+++|..+|+|+||||+|..+.+   .++||++|+||+.|...++++.+.++.+..    
T Consensus       221 ~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~a~a~~~~a~~~~e---~~~~G~aia~L~~A~~~~~~~~~~~~~~~~----  293 (345)
T cd09034         221 KCLSGVDLETIKNIPKKWLLFLKWKKCIFKALAYYYHGLKLDE---ANKIGEAIARLQAALELLKESERLCKSFLL----  293 (345)
T ss_pred             HHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cccHHHHHHHHHHHHHHHHHHHHHHHhccc----
Confidence            999987653  67999999999999999999999999999999   889999999999999999999999887632    


Q ss_pred             CCCCCchhhhHHHHHhHHhHHHHhhhhcCcccccccccCC--CCCCCcccc
Q 036560          326 TRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQA--LPELPNFQL  374 (420)
Q Consensus       326 ~~~p~~~~~~k~l~~~i~~~~~~k~r~N~~IY~qe~vp~~--~p~lp~~~l  374 (420)
                          +.++.++.+.++|++.+.+++||||+|||+ +||++  +|+++.-.+
T Consensus       294 ----~~~~~~~~l~~~i~~~l~~~~kdNd~Iy~e-~VP~~~~Lp~i~~~~~  339 (345)
T cd09034         294 ----DVWGNLKKLKEKIEKELEKAERENDFIYFE-EVPPEDPLPEIKGALL  339 (345)
T ss_pred             ----hHHHHHHHHHHHHHHHHHHHHhhhhHhhcc-cCCCCCCCCccccccc
Confidence                468889999999999999999999999998 78865  666665555

This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to

>cd09248 BRO1_Rhophilin_1 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-1

Probab=100.00  E-value=1.4e-64  Score=508.70  Aligned_cols=307  Identities=15%  Similarity=0.062  Sum_probs=264.7

Q ss_pred             eeeecCCCCCCCCCchHHHhhhhHHHH----------HHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHhhhc
Q 036560           22 VVYVPAIRIPLQSDLPRALKGVIPKEL----------VDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGLTKK   91 (420)
Q Consensus        22 ~l~iPglK~t~~vD~~~~L~~~I~~~y----------i~~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~qL~~l~~k   91 (420)
                      ||.|| +|+|.+|||+.||++||.++|          |.+|+.||+++++...    +..+  ++.|.+||.||+.|+.|
T Consensus         1 mi~lp-lK~T~~vDl~~pL~~yI~~~Y~q~~~~y~~dl~~l~~LR~~~~~~~~----~~sg--le~L~~YY~qL~~Le~R   73 (384)
T cd09248           1 MIPLG-LKETKELDLPTPLKELISEHFGEDGTSYEAEIRELEDLRQAMRTPSR----SEAG--LELLMAYYNQLCFLDAR   73 (384)
T ss_pred             CCCCC-CCcCCcCChHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCC----ChhH--HHHHHHHHHHHHHHHhc
Confidence            57889 999999999999999999999          9999999999654322    1122  78999999999999999


Q ss_pred             cCCC--CCcceeEeecCCCCCCcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHHHH
Q 036560           92 ENGL--EDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLK  169 (420)
Q Consensus        92 fp~~--~~~v~F~W~dsl~~~~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~fq~  169 (420)
                      ||..  +.+|.|+|+|+|++  .+++++|+.||++||||||||+ |||+          |+.++|.++||+|.||.+||+
T Consensus        74 Fp~~~~~~~v~FtW~Daf~~--~~~~q~sl~FEKasVLFNigAL-~Sql----------aa~~~r~t~eGlK~A~~~FQ~  140 (384)
T cd09248          74 FFPPAKSLGLFFHWYDSLTG--VPAQQRALAFEKGSVLFNIGAL-HTQI----------GARQDRSCTEGTRRAIDAFQR  140 (384)
T ss_pred             CCCCcccccceeeeeccCCC--CccccccHHHHHHHHHHhHHHH-HHHH----------HhhccCCChHHHHHHHHHHHH
Confidence            9843  46899999999998  6999999999999999999999 9999          999999999999999999999


Q ss_pred             HhhHHHHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhh-------hhcccchhHHHHHHHHHHHH
Q 036560          170 ASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAV-------DCQKATLSVKRRLACELLIY  242 (420)
Q Consensus       170 AAG~F~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi-------~~~K~k~sliAkLA~q~~~~  242 (420)
                      |||+|+||++++.        +.|++||++++|.+|+.+||||||||+|+|++       .+ ++++++|||||+||+++
T Consensus       141 AAG~F~~L~e~~~--------~~Ps~Dms~~~L~~L~~LMLAQAQEC~~eKail~~~~~~~d-~~k~~~iAKlAaQvs~~  211 (384)
T cd09248         141 AAGAFSLLRENFS--------NAPSPDMSTASLSMLEQLMVAQAQECIFEGLLLPLLATPQD-FFAQLQLAQEAAQVAAE  211 (384)
T ss_pred             HHHHHHHHHHHhc--------cCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-cchhhHHHHHHHHHHHH
Confidence            9999999999973        46889999999999999999999999999999       55 47999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCC-------------------------------
Q 036560          243 YSQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNE-------------------------------  291 (420)
Q Consensus       243 Y~~A~~~l~~~~~~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~-------------------------------  291 (420)
                      |++|++.+.+.++++.|++.|+.+|++|..||+|+||||+|+.+.+...                               
T Consensus       212 Y~~a~~~~~~~~~~~~i~~~W~~~v~~K~~hF~AlA~y~~A~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~  291 (384)
T cd09248         212 YRLVHRTMAQPPVRDYVPFSWTALVHVKAEHFCALAHYHAAMALCDSSPASEGELATQEKAFLQPHTSQPEGPSLPQEPE  291 (384)
T ss_pred             HHHHHHHHhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHhccCCCCCCCccccccChH
Confidence            9999999998888889999999999999999999999999999774221                               


Q ss_pred             -CCchhHHHHHHHHHHHHHHHHHHHHh---hccCCCCCCCCCCchhhhHHHHHhHHhHHHHhhhhcCcccccccccCCC
Q 036560          292 -PSCHVSAVCCFLAAEEILAESKKACL---TFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQAL  366 (420)
Q Consensus       292 -~~~~GeaIa~L~~A~~~l~ea~k~~~---~~~~~~p~~~~p~~~~~~k~l~~~i~~~~~~k~r~N~~IY~qe~vp~~~  366 (420)
                       ..+.|.  ++|+.|....+||.|+.+   .-.      ..-.+.+.++.-+++......+..+|+||+|..| .|...
T Consensus       292 ~~~~~~~--ahl~~a~~~~eea~r~~~~c~~l~------~~~~l~~~l~~~~~~s~~~~~~~~~~~d~~~~~~-~~~~~  361 (384)
T cd09248         292 ERRKLGK--AHLKRAILGQEEALRLHALCRILR------KVDLLQAVLTQALRRSLAKYSELDREDDFFETGE-APDIQ  361 (384)
T ss_pred             HHHHHHH--HHHHHHHHhhHHHHHHHHHHHHhc------cHHHHHHHHHHHHHHHHHHHhhhccccchhhccc-cCccc
Confidence             134455  899999999999997544   211      0112445567777888888889999999999874 34433

This subfamily contains the Bro1-like domain of the RhoA-binding protein, Rhophilin-1. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. The Drosophila knockout of the Rhophilin-1 is embryonic lethal, suggesting an essential role i

>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome

Probab=100.00  E-value=1.3e-63  Score=508.09  Aligned_cols=321  Identities=21%  Similarity=0.244  Sum_probs=269.0

Q ss_pred             ceeeecCCCCCCCCCchHHHhhhhHHHH----------HHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHhhh
Q 036560           21 VVVYVPAIRIPLQSDLPRALKGVIPKEL----------VDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGLTK   90 (420)
Q Consensus        21 ~~l~iPglK~t~~vD~~~~L~~~I~~~y----------i~~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~qL~~l~~   90 (420)
                      ||+.|| ||+|++|||.++|++||.++|          +++|+.||+++++...   .  ...+++.|.+||+||..|+.
T Consensus         1 ~~~~lp-lK~t~~vd~~~~l~~~i~~~y~~~~~~~~~~l~~l~~lR~~~~~~~~---~--~~~~~~~l~~Y~~~L~~l~~   74 (377)
T PF03097_consen    1 PMLSLP-LKKTKEVDLKKPLKKYISSHYGEDPDSFDEDLKELDKLRQDARNPQS---P--SESGLKLLEEYYPQLESLEK   74 (377)
T ss_dssp             ----------BEEE-CHHHHHHHHHHHCSSCCHCCHHHHHHHHHHHHHHHTSS----S--SHHHHHHHHHHHHHHHHHCC
T ss_pred             CcCCCC-CCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhccCC---C--chhHHHHHHHHHHHHHHHHH
Confidence            689999 999999999999999999998          9999999999987531   2  23348999999999999999


Q ss_pred             ccCCCCCcceeEeecCCCCCCcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHHHHH
Q 036560           91 KENGLEDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKA  170 (420)
Q Consensus        91 kfp~~~~~v~F~W~dsl~~~~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~fq~A  170 (420)
                      |||....+|.|+|+|+|+. ..++++.|+.||++|||||+|++ |+++          |...+|.+++|+|.|+.+||+|
T Consensus        75 ~~p~~~~~i~F~W~d~~~~-~~~~~~~~~~fE~a~vL~N~aa~-~s~~----------a~~~~~~~~~~~k~A~~~fq~A  142 (377)
T PF03097_consen   75 RFPSDQIQISFTWSDSLST-GKPVSQSSLAFEKACVLFNIAAL-YSQL----------AASQNRSTDEGLKEACNYFQRA  142 (377)
T ss_dssp             CSCSSCCTT-EEEE-TTST-TSEEEESSHHHHHHHHHHHHHHH-HHHH----------HHHS-TTSHHHHHHHHHHHHHH
T ss_pred             hcccccceeeEeeeccccC-CCcccchhhHHHHHHHHHHHHHH-HHHH----------HHhcccccchhHHHHHHHHHHH
Confidence            9997677899999999955 37999999999999999999999 9999          8888888999999999999999


Q ss_pred             hhHHHHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHHHHh
Q 036560          171 SGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAYQCL  250 (420)
Q Consensus       171 AG~F~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~~K~k~sliAkLA~q~~~~Y~~A~~~l  250 (420)
                      ||+|+||++++        ...++.||++++|.+|..+||||||||+|+||+.++ .++++|||||++++++|++|.+.+
T Consensus       143 Ag~f~~l~~~~--------~~~~s~Dl~~~~l~~l~~l~lAqAQe~~~~ka~~~~-~~~~liAKLa~~~~~~Y~~a~~~l  213 (377)
T PF03097_consen  143 AGIFQYLRENF--------KDSPSPDLSPEVLSALSNLMLAQAQECFYEKAIADK-KKPSLIAKLAAQASELYDEAHEAL  213 (377)
T ss_dssp             HHHHHHHHHHS--------SS-SSGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTT-G-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhh--------cccCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHcc-CchHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999995        246788999999999999999999999999999984 899999999999999999999999


Q ss_pred             hcCCCCCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 036560          251 SGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPP  330 (420)
Q Consensus       251 ~~~~~~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p~~~~p~  330 (420)
                      .+.+..+.+++.|..++.+|..+|.|+||||+|..+.+   .++||++|+||+.|.+.++++.+.++.+      ...+.
T Consensus       214 ~~~~~~~~~~~~w~~~~~~K~~~~~A~A~y~~A~~~~~---~~~~G~aia~L~~A~~~l~~a~~~~~~~------~~~~~  284 (377)
T PF03097_consen  214 QSSPLSESIPKDWRSYVQVKSAYYRALAHYHQALAAEE---AKKYGEAIARLRRAEEALKEASKLAKKC------SKSSS  284 (377)
T ss_dssp             TTCHHHHCSHCCHHHHHHHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHHHHHCCCH------SCCST
T ss_pred             hcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhcccHHHHHHHHHHHHHHHHHhhhhcc------cchHH
Confidence            99887777889999999999999999999999999999   9999999999999999999999998765      22455


Q ss_pred             chhhhHHHHHhHHhHHHHhhhhcCcccccccccCC--CCCCCccccccCCC
Q 036560          331 LWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQA--LPELPNFQLSLRPD  379 (420)
Q Consensus       331 ~~~~~k~l~~~i~~~~~~k~r~N~~IY~qe~vp~~--~p~lp~~~l~~~p~  379 (420)
                      ....++.+.+.|.+.+.+..||||+|||+ +||+.  +|+++...+ ++|.
T Consensus       285 ~~~~~~~l~~~i~~~l~~~~kdNd~Iy~e-~VP~~~~L~~~~~~~~-vk~~  333 (377)
T PF03097_consen  285 LQDDLKSLLDQIQEKLEKAEKDNDFIYHE-PVPSESELPPIKPASM-VKPI  333 (377)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHTT---S--SCGGSGGS-SSST-T---
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccccc-cCCCcccccccccccc-cCCC
Confidence            77889999999999999999999999997 77765  445555555 4554

The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....

>cd09249 BRO1_Rhophilin_2 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-2

Probab=100.00  E-value=4.8e-60  Score=475.36  Aligned_cols=238  Identities=16%  Similarity=0.122  Sum_probs=218.1

Q ss_pred             eeeecCCCCCCCCCchHHHhhhhHHHH----------HHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHhhhc
Q 036560           22 VVYVPAIRIPLQSDLPRALKGVIPKEL----------VDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGLTKK   91 (420)
Q Consensus        22 ~l~iPglK~t~~vD~~~~L~~~I~~~y----------i~~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~qL~~l~~k   91 (420)
                      ||.|| +|+|.+|||+.||++||.++|          |.+|+.||+++.+...+    ..+  ++.|.+||.||+.|+.|
T Consensus         1 ~i~lp-lK~T~~VD~~~pL~~yI~~~Y~q~~~~y~~dl~~l~~LR~~~~~~~~~----~sg--~e~L~~YY~qL~~Le~R   73 (385)
T cd09249           1 LIPLG-LKETKDVDFSVPLKDFILEHYSEDGSEYEDEIADLMDLRQACRTPSRD----EAG--VELLMSYFSQLGFLENR   73 (385)
T ss_pred             CCCCC-CCcCCccChHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCC----hhH--HHHHHHHHHHHHHHHhh
Confidence            46788 999999999999999999999          99999999996543222    122  78999999999999999


Q ss_pred             cCC--CCCcceeEeecCCCCCCcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHHHH
Q 036560           92 ENG--LEDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLK  169 (420)
Q Consensus        92 fp~--~~~~v~F~W~dsl~~~~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~fq~  169 (420)
                      ||.  .+.+|.|+|+|+|++  .+++++|+.||++||||||||| |||+          |+.++|.+++|+|+||++||+
T Consensus        74 Fp~~~~~~~v~FtW~Dsf~~--~~~~q~sl~fEkasVLFNigAl-~Sql----------aa~~~r~t~eGlK~A~~~FQ~  140 (385)
T cd09249          74 FFPPTRQMGILFTWYDSFTG--VPVSQQNLLLEKASILFNIGAL-YTQI----------GTRCNRQTQAGLESAVDAFQR  140 (385)
T ss_pred             CCCCcccccceeeeeccCCC--CccccccHHHHHHHHHHhHHHH-HHHH----------HHHhccCCchhHHHHHHHHHH
Confidence            974  357899999999996  7899999999999999999999 9999          999999999999999999999


Q ss_pred             HhhHHHHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhH-----HHHHHHHHHHHHH
Q 036560          170 ASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSV-----KRRLACELLIYYS  244 (420)
Q Consensus       170 AAG~F~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~~K~k~sl-----iAkLA~q~~~~Y~  244 (420)
                      |||+|+||++++.        ..|+.||++++|++|+.+||||||||+|+|++.++ +++++     |||||+||+++|+
T Consensus       141 AAG~F~~L~e~~~--------~~ps~Dls~~~L~~L~~LmLAQAQEc~~~Kai~d~-~k~~~~~i~kiAklAaqvs~~Y~  211 (385)
T cd09249         141 AAGVLNYLKETFT--------HTPSYDMSPAMLSVLVKMMLAQAQECLFEKISLPG-IRNEFFTLVKMAQEAAKVGEVYM  211 (385)
T ss_pred             HHHHHHHHHHhcc--------CCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhcc-CcchhhHHHHHHHHHHHHHHHHH
Confidence            9999999999973        46788999999999999999999999999999985 78887     8999999999999


Q ss_pred             HHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHhccccC
Q 036560          245 QAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDK  288 (420)
Q Consensus       245 ~A~~~l~~~~~~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e  288 (420)
                      +|++.+++.++.+.|++.|+.++++|.+||+|+||||+|..+++
T Consensus       212 ~a~~al~s~~~~~~i~~~W~~~v~~K~~~f~AlA~Y~~A~~l~~  255 (385)
T cd09249         212 QVHTAMNQAPVKENIPYSWSSLVQVKAHHYNALAHYFVATLLID  255 (385)
T ss_pred             HHHHHHhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999998888889999999999999999999999999998884

This subfamily contains the Bro1-like domain of RhoA-binding protein, Rhophilin-2. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-1, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-2, binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-2 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Roles for Rhophilin-2 may include limiting stress fiber formation or increasing the turnover of F-

>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains

Probab=100.00  E-value=6.3e-56  Score=454.92  Aligned_cols=352  Identities=18%  Similarity=0.137  Sum_probs=273.3

Q ss_pred             CCCCCCCchHHHhhhhHHHHHHHHHHHHHHHHhhhhcCC-------CCchHHHHHHHHHHHHHHHHhhhccCC----CCC
Q 036560           29 RIPLQSDLPRALKGVIPKELVDRLTCLRNQIVLVAEDTD-------GSAITELRRALEEYLTLLIGLTKKENG----LED   97 (420)
Q Consensus        29 K~t~~vD~~~~L~~~I~~~yi~~L~~LR~~i~~~~~~~~-------~s~~~~l~~~L~~Y~~qL~~l~~kfp~----~~~   97 (420)
                      =.|.+|.|..-+..-=....+......|..++....+|.       .+....++++|++||++|.+|+.+||.    ++.
T Consensus         7 ptTs~~sF~~~~~~~~~~~l~~~a~~~R~~lr~~lk~~k~~~~~~~~~~~~~~~~aL~~Ylp~L~~l~~~~~~~~~~l~~   86 (413)
T cd09245           7 PTTSSISFSDFFNSDSYPSLPLNATTARAVLRAALKAHKRTPPGSQASNLLTVVKALEEYLPYLLAIDACLSHDELILKS   86 (413)
T ss_pred             CCCcccchhhhcCCCcccchhhHHHHHHHHHHHHHHhcccCCcccccccHHHHHHHHHHHHHHHHHHHccCCcchhcccc
Confidence            377889996433331111238899999999887765543       133457799999999999999999983    346


Q ss_pred             cceeEeecCCCCCC----cceeecchHHHHHHHHHHHHHHHHHhhhccc-CCCCcccc------cccCCChhhHHHHHHH
Q 036560           98 LVEFKWKNLGDYGK----QEAFVANSWFELLSVVHMMAMLTLSDANSLM-IPKDFSGL------AVRVLSSDCKREAVDL  166 (420)
Q Consensus        98 ~v~F~W~dsl~~~~----~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l-~~~~~~~~------~~~r~s~eglK~A~~~  166 (420)
                      .|.|+|+|+|+++.    ..+++.|++||++|||||||++ ||+++..+ .+...+..      ...+.++|++|.||++
T Consensus        87 ~i~F~W~~tl~~~~~~~~~~~~~~sl~fE~a~VLfnla~l-~S~~A~~~l~~~~~~~~~~~is~~~~~~~~e~lK~A~~~  165 (413)
T cd09245          87 EPTFEWRTTLSSTSGRESPRLPLPGLHYELAFVLLTYAYA-LSNLARSILAPLGAYETDRSISDASRKQRDERLKAATKL  165 (413)
T ss_pred             cceeEeecccccCCCCCCcccccCCHHHHHHHHHHHHHHH-HHHHHHHHhcccccccccccccccccccchHHHHHHHHH
Confidence            79999999998743    3589999999999999999999 99885542 22110000      1237889999999999


Q ss_pred             HHHHhhHHHHHHhhcccCCCCcc-ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhh---------------ccc--c
Q 036560          167 LLKASGYLEFCIKNIIVHIPPDI-KIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDC---------------QKA--T  228 (420)
Q Consensus       167 fq~AAG~F~~l~e~~l~~l~~~~-~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~---------------~K~--k  228 (420)
                      ||+|||||+||++++++.++... ...+++||+++++.+|+.|||||||||+|.|++..               +|+  +
T Consensus       166 l~~AAGvf~~L~~~~l~~~~~~~~~~~~~~DLs~~~l~aL~~L~LAqAQel~~~K~~~~~~~~d~~~~~~ap~~~k~~~s  245 (413)
T cd09245         166 LCKAAGIFDYLATRVLPQWESNRGGAPPPPDLSPEVLSALSSLALAEATLLAVRKLDPYPAAVDKDWMTPGPPLPKVHPS  245 (413)
T ss_pred             HHHHHHHHHHHHhcccccccccccCCCCCcccCHHHHHHHHHHHHHHHHHHHHHhhhhhcccccchhcccCccccccccc
Confidence            99999999999999998875321 23578899999999999999999999999998752               132  5


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhcCCC---CCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHH
Q 036560          229 LSVKRRLACELLIYYSQAYQCLSGCDM---NHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAA  305 (420)
Q Consensus       229 ~sliAkLA~q~~~~Y~~A~~~l~~~~~---~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A  305 (420)
                      ++||||||+|+++||++|.+.+.+.+.   .+.|+.+|+.|+.+|..+|+|+||||+|+++++   +++||++|++|+.|
T Consensus       246 ~sLiAKLa~~~~~~y~~A~~~l~~~~~~~~~~~i~~~~~~yl~~k~~~~~A~A~~~~g~d~~e---~~k~GeaIa~L~~A  322 (413)
T cd09245         246 AHLLARLCLAASEHAESARALLSTPGSKRGSGEVSEELLRYLSDLRRVARALACKFLGIDAGE---NGKVGEAIGWLRAA  322 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhHh---cCCHHHHHHHHHHH
Confidence            699999999999999999999987764   346889999999999999999999999999999   88999999999999


Q ss_pred             HHHHHHHHHHHhhccCCC-C-------CCCCCCchhhhHHHHHhHHhHHHHhhhhcCcccccccccCCCC---CCCcccc
Q 036560          306 EEILAESKKACLTFSLAP-P-------TTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQALP---ELPNFQL  374 (420)
Q Consensus       306 ~~~l~ea~k~~~~~~~~~-p-------~~~~p~~~~~~k~l~~~i~~~~~~k~r~N~~IY~qe~vp~~~p---~lp~~~l  374 (420)
                      .+.++++++......... +       ..+....+...+.+.++|...+.+.+||||+||+| +||+.-+   .+|.-.-
T Consensus       323 ~~~L~~~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~~~~e~~~i~~~l~~~~K~ND~Iy~q-~VP~~~~L~~~~P~Gr~  401 (413)
T cd09245         323 KKELEDLKSPSGVASKAKLKKSWKEKREDRKVEKGAGVEEELRTLEMLLKKYKKMNDTVSFQ-PVPPSSELQSSMPSGRE  401 (413)
T ss_pred             HHHHHHhhhccccccccccchhhhhhhhhhhchhhhhHHHHHHHHHHHHHHHHHhcceeeee-cCCChHhhhhcCCCccc
Confidence            999988776422100000 0       00111112456788999999999999999999998 8885433   6776444


Q ss_pred             ccCCCCCCCCC
Q 036560          375 SLRPDNYELPE  385 (420)
Q Consensus       375 ~~~p~~~~lp~  385 (420)
                      .+.|.||..|+
T Consensus       402 i~~~~~~~~p~  412 (413)
T cd09245         402 AHTAKPYTPPP  412 (413)
T ss_pred             ccCCCCCCCCC
Confidence            47788898886

This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop

>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily

Probab=100.00  E-value=7.3e-55  Score=439.59  Aligned_cols=323  Identities=16%  Similarity=0.140  Sum_probs=255.7

Q ss_pred             CCCCCCchHHHhhhhH-HHH-HHHHHHHHHHHHhhhhcCCCCch------HHHHHHHHHHHHHHHHhhhcc--CCCCCcc
Q 036560           30 IPLQSDLPRALKGVIP-KEL-VDRLTCLRNQIVLVAEDTDGSAI------TELRRALEEYLTLLIGLTKKE--NGLEDLV   99 (420)
Q Consensus        30 ~t~~vD~~~~L~~~I~-~~y-i~~L~~LR~~i~~~~~~~~~s~~------~~l~~~L~~Y~~qL~~l~~kf--p~~~~~v   99 (420)
                      .|+.+.|...+..-=+ .+. +.+.+.-|+.++.....|.--+.      .+.+..|..|+..|.++..++  -.++..|
T Consensus         7 ~t~~~~f~~~~~~~~~~t~~~l~~~s~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~L~~~~~~L~~~~~~~~~~~l~~~i   86 (346)
T cd09247           7 KTKKIVFEKTFQARDSLTLEQLKELSLRRRAIIESINGSPFIALAIAREKAQYLPYLEGYLPALENLVNHRDKVQLNEQL   86 (346)
T ss_pred             CccccchhhhhhcCCcccccccchhhHHHHHHHHHhhcCCCccHHHHHhhhhHHHHHHHHHHhhccCCccchHHhhcccC
Confidence            5667777554432211 111 55555555555543322211111      124667777777777777765  2367899


Q ss_pred             eeEeecCCCC--CCcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHHHHHhhHHHHH
Q 036560          100 EFKWKNLGDY--GKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFC  177 (420)
Q Consensus       100 ~F~W~dsl~~--~~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~fq~AAG~F~~l  177 (420)
                      .|+|+|+|++  +...+++.|++||++|||||+|++ ||++          |....+.  ||+|.||++||+|||||+||
T Consensus        87 ~F~W~~~l~~~~~~~~~~~~sl~fE~~~vLfn~aa~-~s~~----------A~~~~~~--e~~K~A~~~l~~AAG~f~~l  153 (346)
T cd09247          87 SFRWTSGLGSSKGPKAFQSDSLRFELGMVLFLYGAA-LRER----------ASEVLPT--EDFKEAATHLRRAAGVFEFL  153 (346)
T ss_pred             ceeeecccCCCCCCceeeccchHHHHHHHHHHHHHH-HHHH----------HHHhccH--HHHHHHHHHHHHHHHHHHHH
Confidence            9999999987  445678899999999999999999 9999          5544332  89999999999999999999


Q ss_pred             HhhcccCCCCcc-ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHHHHhhcCCC-
Q 036560          178 IKNIIVHIPPDI-KIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAYQCLSGCDM-  255 (420)
Q Consensus       178 ~e~~l~~l~~~~-~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~~K~k~sliAkLA~q~~~~Y~~A~~~l~~~~~-  255 (420)
                      .++++|.++++. ...+++||+++++++|+.|||||||||+|+||+.++ ++++||||||+|+++||++|.+.+.+... 
T Consensus       154 ~~~~l~~~~~~~s~~~~~~Dl~~~~~~aL~~l~LAqAQe~~~~KAi~~~-~~~sliAKLa~~~~~~y~~A~~~l~~~~~~  232 (346)
T cd09247         154 AHDELPRLRGALSADERPPECTPSLALAMSLLCLAEAQAVTARKAEEKG-TSPSLLAKLHYGATQFLEEAKNVLRSLATD  232 (346)
T ss_pred             HhccccccccCcccCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence            999999875433 245678999999999999999999999999999986 89999999999999999999999987542 


Q ss_pred             CCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCchhhh
Q 036560          256 NHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAM  335 (420)
Q Consensus       256 ~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p~~~~p~~~~~~  335 (420)
                      ...+.++|+.|+++|..+|+|+||||+|+++++   +++||++|++|+.|.+.++++++.+..+           .....
T Consensus       233 ~~~i~~~~~~~l~~k~~~~~A~A~~~~a~~~~~---~~k~GeaIa~L~~A~~~l~~~~~~~~~~-----------~~~~~  298 (346)
T cd09247         233 LKDLDPRFLRFISSCIALHEARSQLYLARRLKE---AGHIGVAVGVLREALRNLKKKLPGSDIS-----------SPVIF  298 (346)
T ss_pred             hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHHHHhhccCchh-----------HHHHH
Confidence            134668999999999999999999999999999   8999999999999999999988764422           13567


Q ss_pred             HHHHHhHHhHHHHhhhhcCcccccccccCC--CCCCCccccccCCCCCC
Q 036560          336 KHLHQTIPEVASRKSQMYGYLLEEEKALQA--LPELPNFQLSLRPDNYE  382 (420)
Q Consensus       336 k~l~~~i~~~~~~k~r~N~~IY~qe~vp~~--~p~lp~~~l~~~p~~~~  382 (420)
                      +.+.+.|.+.+.+.+||||+|||| +||+.  +|.+..-.| ++|.||.
T Consensus       299 ~~~~~~i~~~l~~a~kdNd~IY~e-~VP~~~~L~~~~~~~~-vk~ip~~  345 (346)
T cd09247         299 RDERAEVATLLQKYEKENEVIYFE-KVPDIDELPLPEGKVI-VKPVPYK  345 (346)
T ss_pred             HHHHHHHHHHHHHHHhccCeEEee-cCCCccccCCCccccc-eeecCCC
Confidence            889999999999999999999998 88854  666666666 4777664

This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in

>KOG2220 consensus Predicted signal transduction protein [General function prediction only]

Probab=100.00  E-value=8.7e-50  Score=431.25  Aligned_cols=317  Identities=20%  Similarity=0.273  Sum_probs=280.7

Q ss_pred             eeecCCCCCCCCCchHHHhhhhHHHH----------HHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHhhhcc
Q 036560           23 VYVPAIRIPLQSDLPRALKGVIPKEL----------VDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGLTKKE   92 (420)
Q Consensus        23 l~iPglK~t~~vD~~~~L~~~I~~~y----------i~~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~qL~~l~~kf   92 (420)
                      +.|| +|+|.++||..+|..||..+|          |+++.+||+.+..+...  .    ...+.+.+||.||+.|..||
T Consensus         6 ~~~~-lK~t~e~d~~~~l~~~i~~~y~~~~~~~~~~i~~~~~lR~~a~~~~~~--~----~~~~~l~~yy~qL~~l~~r~   78 (714)
T KOG2220|consen    6 LPIP-LKKTSEVDFLKPLSKLIQLSYGESQENRNDAIEKLEKLRNNANGVPKP--S----EGLEVLKRYYGQLCYLESRF   78 (714)
T ss_pred             cCcc-cccCCccchhhhHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCCcc--h----hhhHHHHHHHHHHHHHHHhc
Confidence            7789 999999999999999999998          88999999998765321  1    12679999999999999999


Q ss_pred             CCCCCcce-eEeecCCCCCCcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHHHHHh
Q 036560           93 NGLEDLVE-FKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKAS  171 (420)
Q Consensus        93 p~~~~~v~-F~W~dsl~~~~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~fq~AA  171 (420)
                      |.....+. |+|+|.++++...+++.++.||++|||||||++ |+++          |++.+|.+.||+|.||.+||.||
T Consensus        79 p~~~~~~~~F~W~d~~~~~~~~~~~~~L~fEka~vLfni~~l-~s~i----------aa~~~~~~~d~~k~a~~~fq~aa  147 (714)
T KOG2220|consen   79 PMSENEIEEFTWKDAFDSGAKKVTQISLGFEKACVLFNIAAL-YSQI----------AAHQSRETVDGYKAAIAHFQAAA  147 (714)
T ss_pred             CcccccccceeeeecccCCccceeeccchhhHHHHHHHHHHH-HHHH----------HHHhccCchHHHHHHHHHHHHHH
Confidence            97666555 999999998558999999999999999999999 9999          99999999999999999999999


Q ss_pred             hHHHHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHHHHhh
Q 036560          172 GYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAYQCLS  251 (420)
Q Consensus       172 G~F~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~~K~k~sliAkLA~q~~~~Y~~A~~~l~  251 (420)
                      |+|.|++++.+       ..+|++|+++++|.++..+|+||||||||.+++.++ +++++|+||++|++.||.+|++.+.
T Consensus       148 gaf~~l~~~~~-------~~~~~~d~~~~~l~~~~~l~~AqAQec~f~ks~~d~-~~~~~iaKis~q~~~fy~~Al~~~~  219 (714)
T KOG2220|consen  148 GAFRYLSRDAL-------GVEPLVDLSSLTLVFLRFLMLAQAQECFFYKSLTDN-PKPSIIAKLSAQVVLFYEEALKAQI  219 (714)
T ss_pred             HHHHhhcHHhc-------CcccccccCHHHHHHHHHhhHHhhchheeehhhcCC-cchHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999994433       257899999999999999999999999999999984 9999999999999999999999999


Q ss_pred             cCCCCCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCc
Q 036560          252 GCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPL  331 (420)
Q Consensus       252 ~~~~~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p~~~~p~~  331 (420)
                      . .+.+.|.+.|+.++..|..+|.++++||+|..+.+   ++++|++|++|+.+...+++|++.....        .+.+
T Consensus       220 ~-~~~~~~~~~w~~~~~~k~~~~~~v~~~~~~~~~~e---~~~~ge~i~~l~~~~~~l~~Aqk~~~~~--------~~~~  287 (714)
T KOG2220|consen  220 G-ARADRITKEWLTLVAAKFARFAGVAYYYQSLFLHE---KSKDGEAIARLQLSLLMLSEAQKCSFGE--------FTDV  287 (714)
T ss_pred             H-hhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhhHHHHHHHHHHHHHHHHHHhhccc--------chhH
Confidence            8 56788999999999999999999999999999999   9999999999999999999999864431        1112


Q ss_pred             hhhhHHHHHhHHhHHHHhhhhcCccccccccc--CCCCCCCccccccCCCCCCC
Q 036560          332 WGAMKHLHQTIPEVASRKSQMYGYLLEEEKAL--QALPELPNFQLSLRPDNYEL  383 (420)
Q Consensus       332 ~~~~k~l~~~i~~~~~~k~r~N~~IY~qe~vp--~~~p~lp~~~l~~~p~~~~l  383 (420)
                      +    .....|.+.+.++.||||||||+ +||  .++|+++.+.+ ++|.+++-
T Consensus       288 ~----~~~~~~~~~lk~a~kdNdFIyhe-~vp~~~~l~~~~~~~~-vkp~~~~~  335 (714)
T KOG2220|consen  288 I----ESLSSLEKALKEAKKDNDFIYHE-RVPKVSELPPLKAAQL-VKPLPWAV  335 (714)
T ss_pred             h----hhhhHHHHHHHhhhcccchhhhc-ccccccccCCcchhHh-hcCCCccc
Confidence            2    33378888999999999999998 777  88888888888 68776554

>KOG2220 consensus Predicted signal transduction protein [General function prediction only]

Probab=98.61  E-value=2.6e-07  Score=101.49  Aligned_cols=171  Identities=11%  Similarity=-0.005  Sum_probs=131.5

Q ss_pred             ceeeec-CCCCCCCCCchHHHhhhhHHHH-----------HHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHh
Q 036560           21 VVVYVP-AIRIPLQSDLPRALKGVIPKEL-----------VDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGL   88 (420)
Q Consensus        21 ~~l~iP-glK~t~~vD~~~~L~~~I~~~y-----------i~~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~qL~~l   88 (420)
                      .+=.+| ||+++..+++..+|...|..++           |..|+..|.....+.++.-+....  .+.-..++.-+..+
T Consensus       100 ~~~~~~L~fEka~vLfni~~l~s~iaa~~~~~~~d~~k~a~~~fq~aagaf~~l~~~~~~~~~~--~d~~~~~l~~~~~l  177 (714)
T KOG2220|consen  100 KVTQISLGFEKACVLFNIAALYSQIAAHQSRETVDGYKAAIAHFQAAAGAFRYLSRDALGVEPL--VDLSSLTLVFLRFL  177 (714)
T ss_pred             ceeeccchhhHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHhhcHHhcCcccc--cccCHHHHHHHHHh
Confidence            344555 6999999999999999999887           778888887777665332222111  22222222222222


Q ss_pred             hhccCCCCCcceeEeecCCCCCCcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHHH
Q 036560           89 TKKENGLEDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLL  168 (420)
Q Consensus        89 ~~kfp~~~~~v~F~W~dsl~~~~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~fq  168 (420)
                         .+...-.+.|  ++++.+  .+..+--+.+++.+++||.+|+ +++.          ++..++.+.++++.+..-|+
T Consensus       178 ---~~AqAQec~f--~ks~~d--~~~~~~iaKis~q~~~fy~~Al-~~~~----------~~~~~~~~~~w~~~~~~k~~  239 (714)
T KOG2220|consen  178 ---MLAQAQECFF--YKSLTD--NPKPSIIAKLSAQVVLFYEEAL-KAQI----------GARADRITKEWLTLVAAKFA  239 (714)
T ss_pred             ---hHHhhchhee--ehhhcC--CcchHHHHHHHHHHHHHHHHHH-HHHH----------HhhhcccchhHHHHHHHHHH
Confidence               1222344555  888888  6777777889999999999999 9998          66789999999999999999


Q ss_pred             HHhhHHHHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 036560          169 KASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLG  219 (420)
Q Consensus       169 ~AAG~F~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~  219 (420)
                      .++|++.|....+.        .++..|+.+-.+-.+..+||+|||+|..+
T Consensus       240 ~~~~v~~~~~~~~~--------~e~~~~ge~i~~l~~~~~~l~~Aqk~~~~  282 (714)
T KOG2220|consen  240 RFAGVAYYYQSLFL--------HEKSKDGEAIARLQLSLLMLSEAQKCSFG  282 (714)
T ss_pred             HHHHHHHHHHHHHh--------hhhhhhhHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999985        46788999999999999999999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	420
3um3_A	411	Crystal Structure Of The Brox Bro1 Domain In Comple		1e-05
3uly_A	410	Crystal Structure Of Brox Bro1 Domain In Complex Wi		1e-05
3zxp_A	407	Structural And Functional Analyses Of The Bro1 Doma		1e-05
3r9m_A	376	Crystal Structure Of The Brox Bro1 Domain Length =		2e-05
3um1_A	376	Crystal Structure Of The Brox Bro1 Domain In Comple		2e-05

>pdb|3UM3|A Chain A, Crystal Structure Of The Brox Bro1 Domain In Complex With The C- Terminal Tail Of Chmp4b Length = 411

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 140/341 (41%), Gaps = 50/341 (14%)
Query: 74  LRRALEEYLTLLIGL------TKKENGLEDLVEFKWKNLGDYGKQEAFVANSWFELLSVV 127
           ++ A + Y +LL G       + +E+ L  +  FKW +    G+  +   ++ FEL+S+ 
Sbjct: 57  MKNAADSYFSLLQGFINSLDESTQESKLRYIQNFKWTDTLQ-GQVPSAQQDAVFELISMG 115
Query: 128 HMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKNIIVHIPP 187
             +A+     A+ L   ++        ++ D  +E    L  A+G  +   ++   H+P 
Sbjct: 116 FNVALWYTKYASRLAGKEN--------ITEDEAKEVHRSLKIAAGIFKHLKES---HLP- 163
Query: 188 DIKIMLP----KDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYY 243
             K++ P    +DL+  ++EA  IQ   +  E+ +  A++ + A   +   LA E   +Y
Sbjct: 164 --KLITPAEKGRDLESRLIEAYVIQCQAEAQEVTIARAIELKHAP-GLIAALAYETANFY 220
Query: 244 SQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLIL---DKGNEPSCHVSAVC 300
            +A   LS   +   Y  K   ++  K     A AY YHG  L   DK  E      A+ 
Sbjct: 221 QKADHTLSS--LEPAYSAKWRKYLHLKMCFYTAYAYCYHGETLLASDKCGE------AIR 272
Query: 301 CFLAAEEILAESKKACLTF--SLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLE 358
               AE++ A+++  C  +  +  P  T  P      + L   +     +  +  G++  
Sbjct: 273 SLQEAEKLYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGNLVKNTLEKCQRENGFIY- 331
Query: 359 EEKALQALP-ELPNFQLS-----LRPDNYELPEIDQAWNTE 393
                Q +P E P  +L      + P  +E P     W  E
Sbjct: 332 ----FQKIPTEAPQLELKANYGLVEPIPFEFPPTSVQWTPE 368

>pdb|3ULY|A Chain A, Crystal Structure Of Brox Bro1 Domain In Complex With The C-Terminal Tails Of Chmp5 Length = 410

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 140/341 (41%), Gaps = 50/341 (14%)
Query: 74  LRRALEEYLTLLIGL------TKKENGLEDLVEFKWKNLGDYGKQEAFVANSWFELLSVV 127
           ++ A + Y +LL G       + +E+ L  +  FKW +    G+  +   ++ FEL+S+ 
Sbjct: 56  MKNAADSYFSLLQGFINSLDESTQESKLRYIQNFKWTDTLQ-GQVPSAQQDAVFELISMG 114
Query: 128 HMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKNIIVHIPP 187
             +A+     A+ L   ++        ++ D  +E    L  A+G  +   ++   H+P 
Sbjct: 115 FNVALWYTKYASRLAGKEN--------ITEDEAKEVHRSLKIAAGIFKHLKES---HLP- 162
Query: 188 DIKIMLP----KDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYY 243
             K++ P    +DL+  ++EA  IQ   +  E+ +  A++ + A   +   LA E   +Y
Sbjct: 163 --KLITPAEKGRDLESRLIEAYVIQCQAEAQEVTIARAIELKHAP-GLIAALAYETANFY 219
Query: 244 SQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLIL---DKGNEPSCHVSAVC 300
            +A   LS   +   Y  K   ++  K     A AY YHG  L   DK  E      A+ 
Sbjct: 220 QKADHTLSS--LEPAYSAKWRKYLHLKMCFYTAYAYCYHGETLLASDKCGE------AIR 271
Query: 301 CFLAAEEILAESKKACLTF--SLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLE 358
               AE++ A+++  C  +  +  P  T  P      + L   +     +  +  G++  
Sbjct: 272 SLQEAEKLYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGNLVKNTLEKCQRENGFIY- 330
Query: 359 EEKALQALP-ELPNFQLS-----LRPDNYELPEIDQAWNTE 393
                Q +P E P  +L      + P  +E P     W  E
Sbjct: 331 ----FQKIPTEAPQLELKANYGLVEPIPFEFPPTSVQWTPE 367

>pdb|3ZXP|A Chain A, Structural And Functional Analyses Of The Bro1 Domain Protein Brox Length = 407

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 140/341 (41%), Gaps = 50/341 (14%)
Query: 74  LRRALEEYLTLLIGL------TKKENGLEDLVEFKWKNLGDYGKQEAFVANSWFELLSVV 127
           ++ A + Y +LL G       + +E+ L  +  FKW +    G+  +   ++ FEL+S+ 
Sbjct: 63  MKNAADSYFSLLQGFINSLDESTQESKLRYIQNFKWTDTLQ-GQVPSAQQDAVFELISMG 121
Query: 128 HMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKNIIVHIPP 187
             +A+     A+ L   ++        ++ D  +E    L  A+G  +   ++   H+P 
Sbjct: 122 FNVALWYTKYASRLAGKEN--------ITEDEAKEVHRSLKIAAGIFKHLKES---HLP- 169
Query: 188 DIKIMLP----KDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYY 243
             K++ P    +DL+  ++EA  IQ   +  E+ +  A++ + A   +   LA E   +Y
Sbjct: 170 --KLITPAEKGRDLESRLIEAYVIQCQAEAQEVTIARAIELKHAP-GLIAALAYETANFY 226
Query: 244 SQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLIL---DKGNEPSCHVSAVC 300
            +A   LS   +   Y  K   ++  K     A AY YHG  L   DK  E      A+ 
Sbjct: 227 QKADHTLSS--LEPAYSAKWRKYLHLKMCFYTAYAYCYHGETLLASDKCGE------AIR 278
Query: 301 CFLAAEEILAESKKACLTF--SLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLE 358
               AE++ A+++  C  +  +  P  T  P      + L   +     +  +  G++  
Sbjct: 279 SLQEAEKLYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGNLVKNTLEKCQRENGFIY- 337
Query: 359 EEKALQALP-ELPNFQLS-----LRPDNYELPEIDQAWNTE 393
                Q +P E P  +L      + P  +E P     W  E
Sbjct: 338 ----FQKIPTEAPQLELKANYGLVEPIPFEFPPTSVQWTPE 374

>pdb|3R9M|A Chain A, Crystal Structure Of The Brox Bro1 Domain Length = 376

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 140/341 (41%), Gaps = 50/341 (14%)
Query: 74  LRRALEEYLTLLIGL------TKKENGLEDLVEFKWKNLGDYGKQEAFVANSWFELLSVV 127
           ++ A + Y +LL G       + +E+ L  +  FKW +    G+  +   ++ FEL+S+ 
Sbjct: 59  MKNAADSYFSLLQGFINSLDESTQESKLRYIQNFKWTDTLQ-GQVPSAQQDAVFELISMG 117
Query: 128 HMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKNIIVHIPP 187
             +A+     A+ L   ++        ++ D  +E    L  A+G  +   ++   H+P 
Sbjct: 118 FNVALWYTKYASRLAGKEN--------ITEDEAKEVHRSLKIAAGIFKHLKES---HLP- 165
Query: 188 DIKIMLP----KDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYY 243
             K++ P    +DL+  ++EA  IQ   +  E+ +  A++ + A   +   LA E   +Y
Sbjct: 166 --KLITPAEKGRDLESRLIEAYVIQCQAEAQEVTIARAIELKHAP-GLIAALAYETANFY 222
Query: 244 SQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLIL---DKGNEPSCHVSAVC 300
            +A   LS   +   Y  K   ++  K     A AY YHG  L   DK  E      A+ 
Sbjct: 223 QKADHTLS--SLEPAYSAKWRKYLHLKMCFYTAYAYCYHGETLLASDKCGE------AIR 274
Query: 301 CFLAAEEILAESKKACLTF--SLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLE 358
               AE++ A+++  C  +  +  P  T  P      + L   +     +  +  G++  
Sbjct: 275 SLQEAEKLYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGNLVKNTLEKCQRENGFIY- 333
Query: 359 EEKALQALP-ELPNFQLS-----LRPDNYELPEIDQAWNTE 393
                Q +P E P  +L      + P  +E P     W  E
Sbjct: 334 ----FQKIPTEAPQLELKANYGLVEPIPFEFPPTSVQWTPE 370

>pdb|3UM1|A Chain A, Crystal Structure Of The Brox Bro1 Domain In Complex With The C- Terminal Tail Of Chmp5 Length = 376

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 140/341 (41%), Gaps = 50/341 (14%)
Query: 74  LRRALEEYLTLLIGL------TKKENGLEDLVEFKWKNLGDYGKQEAFVANSWFELLSVV 127
           ++ A + Y +LL G       + +E+ L  +  FKW +    G+  +   ++ FEL+S+ 
Sbjct: 56  MKNAADSYFSLLQGFINSLDESTQESKLRYIQNFKWTDTLQ-GQVPSAQQDAVFELISMG 114
Query: 128 HMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKNIIVHIPP 187
             +A+     A+ L   ++        ++ D  +E    L  A+G  +   ++   H+P 
Sbjct: 115 FNVALWYTKYASRLAGKEN--------ITEDEAKEVHRSLKIAAGIFKHLKES---HLP- 162
Query: 188 DIKIMLP----KDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYY 243
             K++ P    +DL+  ++EA  IQ   +  E+ +  A++ + A   +   LA E   +Y
Sbjct: 163 --KLITPAEKGRDLESRLIEAYVIQCQAEAQEVTIARAIELKHAP-GLIAALAYETANFY 219
Query: 244 SQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLIL---DKGNEPSCHVSAVC 300
            +A   LS   +   Y  K   ++  K     A AY YHG  L   DK  E      A+ 
Sbjct: 220 QKADHTLS--SLEPAYSAKWRKYLHLKMCFYTAYAYCYHGETLLASDKCGE------AIR 271
Query: 301 CFLAAEEILAESKKACLTF--SLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLE 358
               AE++ A+++  C  +  +  P  T  P      + L   +     +  +  G++  
Sbjct: 272 SLQEAEKLYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGNLVKNTLEKCQRENGFIY- 330
Query: 359 EEKALQALP-ELPNFQLS-----LRPDNYELPEIDQAWNTE 393
                Q +P E P  +L      + P  +E P     W  E
Sbjct: 331 ----FQKIPTEAPQLELKANYGLVEPIPFEFPPTSVQWTPE 367

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	420
3r9m_A	376	BRO1 domain-containing protein BROX; protein bindi	7e-55
3rau_A	363	Tyrosine-protein phosphatase non-receptor type 23;	2e-28
3c3r_A	380	Programmed cell death 6-interacting protein; ALIX	4e-26
1zb1_A	392	BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking	2e-25
2xs1_A	704	Programmed cell death 6-interacting protein; prote	2e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A Length = 376

 Score =  185 bits (470), Expect = 7e-55
 Identities = 72/375 (19%), Positives = 148/375 (39%), Gaps = 29/375 (7%)

Query: 31  PLQSDLPRALKGVIPKELVDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGL-- 88
           P+  +    + G    ++ + L   R +++ +  D   +    ++ A + Y +LL G   
Sbjct: 17  PVSFNYYGVVTGPSASKICNDLRSSRARLLELFTDLSCNP-EMMKNAADSYFSLLQGFIN 75

Query: 89  ----TKKENGLEDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIP 144
               + +E+ L  +  FKW +    G+  +   ++ FEL+S+   +A+     A+ L   
Sbjct: 76  SLDESTQESKLRYIQNFKWTDTLQ-GQVPSAQQDAVFELISMGFNVALWYTKYASRL--- 131

Query: 145 KDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEA 204
                     ++ D  +E    L  A+G  +   ++ +  +    +    +DL+  ++EA
Sbjct: 132 -----AGKENITEDEAKEVHRSLKIAAGIFKHLKESHLPKLITPAE--KGRDLESRLIEA 184

Query: 205 ISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAYQCLSGCDMNHGYGKKHL 264
             IQ   +  E+ +  A++ + A   +   LA E   +Y +A   LS  +    Y  K  
Sbjct: 185 YVIQCQAEAQEVTIARAIELKHAP-GLIAALAYETANFYQKADHTLSSLEPA--YSAKWR 241

Query: 265 WFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTF--SLA 322
            ++  K     A AY YHG  L   ++      A+     AE++ A+++  C  +  +  
Sbjct: 242 KYLHLKMCFYTAYAYCYHGETLLASDK---CGEAIRSLQEAEKLYAKAEALCKEYGETKG 298

Query: 323 PPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEE--KALQALPELPNFQLSLRPDN 380
           P  T  P      + L   +     +  +  G++  ++       L    N+ L + P  
Sbjct: 299 PGPTVKPSGHLFFRKLGNLVKNTLEKCQRENGFIYFQKIPTEAPQLELKANYGL-VEPIP 357

Query: 381 YELPEIDQAWNTEKW 395
           +E P     W  E  
Sbjct: 358 FEFPPTSVQWTPETL 372

>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens} Length = 363

 Score =  114 bits (285), Expect = 2e-28
 Identities = 57/343 (16%), Positives = 112/343 (32%), Gaps = 59/343 (17%)

Query: 20  EVVVYVPAIRIPL----QSDLPRALKGVIPK----------ELVDRLTCLRNQIVLVAED 65
           E V  +P I + L          A+K  + K          E + +L  LR   V V  D
Sbjct: 4   EAVPRMPMIWLDLKEAGDFHFQPAVKKFVLKNYGENPEAYNEELKKLELLRQNAVRVPRD 63

Query: 66  TDGSAITELRRALEEYLTLLIGLTKK---ENGLEDLVEFKWKNLGDYGKQEAFVANSWFE 122
            +G         L +YL  L  L  +    +G E  V   W  +  +  +     +  +E
Sbjct: 64  FEG------CSVLRKYLGQLHYLQSRVPMGSGQEAAVPVTWTEI--FSGKSVAHEDIKYE 115

Query: 123 LLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKNII 182
              +++ +  L                   + +S +  + +      A+G   +  ++  
Sbjct: 116 QACILYNLGALHSMLGAMD-----------KRVSEEGMKVSCTHFQCAAGAFAYLREHFP 164

Query: 183 VHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIY 242
                D        +   +L       LGQ  E  L  ++   + +  +  R++ +++ Y
Sbjct: 165 QAYSVD--------MSRQILTLNVNLMLGQAQECLLEKSMLDNRKS-FLVARISAQVVDY 215

Query: 243 YSQAYQCLSGCDMNHGYG---KKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAV 299
           Y +A + L   D     G   K     ++ K     A A+ + G   ++  +       V
Sbjct: 216 YKEACRALENPDTASLLGRIQKDWKKLVQMKIYYFAAVAHLHMGKQAEEQQK---FGERV 272

Query: 300 CCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTI 342
             F +A + L E+ K                +  A++     I
Sbjct: 273 AYFQSALDKLNEAIKLAKGQ--------PDTVQDALRFTMDVI 307

>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A Length = 380

 Score =  108 bits (269), Expect = 4e-26
 Identities = 51/320 (15%), Positives = 98/320 (30%), Gaps = 50/320 (15%)

Query: 25  VPAIRIPL----QSDLPRALKGVIPK-------------ELVDRLTCLRNQIVLVAEDTD 67
              I + L    + DL + L   I +                + L+ LR   V    D  
Sbjct: 23  ATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDKH 82

Query: 68  GSAITELRRALEEYLTLLIGLTKK--ENGLEDLVEFKWKNLGD-----YGKQEAFVANSW 120
             A+      L  Y   +  +  K   +  +  + F WK+  D      G  +  +A+  
Sbjct: 83  EGAL----ETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLG 138

Query: 121 FELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKN 180
           +E   V+   A L    A    +  D           +  + A      ASG        
Sbjct: 139 YEKSCVLFNCAALASQIAAEQNLDND-----------EGLKIAAKHYQFASGAFLH---- 183

Query: 181 IIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELL 240
           I   +   +      D+    +  +S+  L Q  E+    A    K   ++  +LA +  
Sbjct: 184 IKETVLSALSREPTVDISPDTVGTLSLIMLAQAQEVFFLKATR-DKMKDAIIAKLANQAA 242

Query: 241 IYYSQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVC 300
            Y+  A++     D      K+    +  K    +A A Y+  ++  +  +       + 
Sbjct: 243 DYFGDAFKQCQYKD---TLPKEVFPVLAAKHCIMQANAEYHQSILAKQQKK---FGEEIA 296

Query: 301 CFLAAEEILAESKKACLTFS 320
               A E++         + 
Sbjct: 297 RLQHAAELIKTVASRYDEYV 316

>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae} Length = 392

 Score =  105 bits (263), Expect = 2e-25
 Identities = 52/398 (13%), Positives = 119/398 (29%), Gaps = 68/398 (17%)

Query: 26  PAIRIPLQS----DLPRALKGVI-------------PKELVDRLTCLRNQIVLVAEDTDG 68
               + L+     D  + L   +              ++    L  LRN        +  
Sbjct: 9   YLFDLKLKDTEKLDWKKGLSSYLKKSYGSSQWRTFYDEKATSELDHLRNNANGELAPSSL 68

Query: 69  SAITELRRALEEYLTLLIGLTKK--ENGLEDLVEFKWKNLGDYGKQEAFV---ANSWFEL 123
                      +Y + L  L  +    G    ++F W +      Q+          FE 
Sbjct: 69  ------SEQNLKYYSFLEHLYFRLGSKGSRLKMDFTWYDAEYSSAQKGLKYTQHTLAFEK 122

Query: 124 LSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKNIIV 183
              +  +A++             F+ +A   ++ D K  ++  L KA    E+  +N + 
Sbjct: 123 SCTLFNIAVI-------------FTQIARENINEDYKN-SIANLTKAFSCFEYLSENFLN 168

Query: 184 HIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKA--TLSVKRRLACELLI 241
               D        LQ      ++     +  E+ +   ++ Q +    ++  +L+     
Sbjct: 169 SPSVD--------LQSENTRFLANICHAEAQELFVLKLLNDQISSKQYTLISKLSRATCN 220

Query: 242 YYSQAYQCLSGCDMNHGYGKKHLW--FIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAV 299
            + + +  +   D +     +  W   +  K    K+ + YYHGL L++ N       A+
Sbjct: 221 LFQKCHDFMKEIDDDVAIYGEPKWKTTVTCKLHFYKSLSAYYHGLHLEEENR---VGEAI 277

Query: 300 CCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYL-LE 358
                + + L  S                   +       +T+ +      +   ++  E
Sbjct: 278 AFLDFSMQQLISSLPFK----------TWLVEFIDFDGFKETLEKKQKELIKDNDFIYHE 327

Query: 359 EEKALQALPELPNFQLSLRPDNYELPEIDQAWNTEKWE 396
              A+  +  +        P   ++ E        K++
Sbjct: 328 SVPAVVQVDSIKALDAIKSPTWEKILEPYMQDVANKYD 365

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704

 Score = 74.2 bits (181), Expect = 2e-14
 Identities = 51/315 (16%), Positives = 95/315 (30%), Gaps = 50/315 (15%)

Query: 26  PAIRIPL----QSDLPRALKGVIPK-------------ELVDRLTCLRNQIVLVAEDTDG 68
             I + L    + DL + L   I +                + L+ LR   V    D   
Sbjct: 9   TFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDKHE 68

Query: 69  SAITELRRALEEYLTLLIGLTKK--ENGLEDLVEFKWK-----NLGDYGKQEAFVANSWF 121
            A+  L R    Y   +  +  K   +  +  + F WK          G  +  +A+  +
Sbjct: 69  GALETLLR----YYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGY 124

Query: 122 ELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKNI 181
           E   V+   A L    A    +  D           +  + A      ASG        I
Sbjct: 125 EKSCVLFNCAALASQIAAEQNLDND-----------EGLKIAAKHYQFASGAFLH----I 169

Query: 182 IVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLI 241
              +   +      D+    +  +S+  L Q  E+    A    K   ++  +LA +   
Sbjct: 170 KETVLSALSREPTVDISPDTVGTLSLIMLAQAQEVFFLKATR-DKMKDAIIAKLANQAAD 228

Query: 242 YYSQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCC 301
           Y+  A++     D      K+    +  K    +A A Y+  ++  +          +  
Sbjct: 229 YFGDAFKQCQYKD---TLPKEVFPVLAAKHCIMQANAEYHQSILAKQQYY---FGEEIAR 282

Query: 302 FLAAEEILAESKKAC 316
              A E++       
Sbjct: 283 LQHAAELIKTVASRY 297

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 3e-08
 Identities = 60/374 (16%), Positives = 111/374 (29%), Gaps = 110/374 (29%)

Query: 29  RIPLQSDLPRAL---KGVIPKELVDR--LTCLRNQIVLVAED---TDG-SAITELRRALE 79
           R+         L     V   +  +   L+C   +I+L       TD  SA T    +L+
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSC---KILLTTRFKQVTDFLSAATTTHISLD 292

Query: 80  EYLTLLIGLTKKENGLEDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDAN 139
                 + LT  E  ++ L+  K+ +                +L   V       LS   
Sbjct: 293 H---HSMTLTPDE--VKSLLL-KYLDC------------RPQDLPREVLTTNPRRLS--- 331

Query: 140 SLMIP---KDFSGLAVRVLSSDCKR--EAVDLLLKA-------SGYLEFCI--KNIIVHI 185
             +I    +D           +C +    ++  L           +    +   +   HI
Sbjct: 332 --IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS--AHI 387

Query: 186 PPDIKIMLPKDLQDGVLEAISIQ------ALGQGTEIQLGLAVDCQ---KATLSVKRRLA 236
           P  +  ++  D+    +  +  +         Q  E  + +        K  L  +  L 
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-SIYLELKVKLENEYALH 446

Query: 237 CELLIYYSQAYQCLSGCDM----------NH-GYGKKHL--------------WFIKWKF 271
             ++ +Y    +     D+          +H G+   HL               F+ ++F
Sbjct: 447 RSIVDHY-NIPKTFDSDDLIPPYLDQYFYSHIGH---HLKNIEHPERMTLFRMVFLDFRF 502

Query: 272 LQAK---------AAAY---------YYHGLILDKGNEPSCHVSAVCCFL-AAEEILAES 312
           L+ K         A+           +Y   I D   +    V+A+  FL   EE L  S
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562

Query: 313 KKACLT-FSLAPPT 325
           K   L   +L    
Sbjct: 563 KYTDLLRIALMAED 576

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 1e-06
 Identities = 66/463 (14%), Positives = 131/463 (28%), Gaps = 162/463 (34%)

Query: 29  RIPLQSDLPRALKGVIPKELVDRLTCLRNQIVLVAEDTDGSAITELRRALEE-----YLT 83
           R  L +D       V  K  V RL                    +LR+AL E      + 
Sbjct: 116 RDRLYNDNQ-----VFAKYNVSRLQP----------------YLKLRQALLELRPAKNVL 154

Query: 84  L----------LIGLTKKENGLEDLVEFK--WKNLGDYGKQEAFVANSWFELLSVVHMMA 131
           +          +         ++  ++FK  W NL +    E  +            +  
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM----------LQK 204

Query: 132 MLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKNIIVHIPPDIKI 191
           +L   D N        S + +R+ S    +  +  LLK+  Y   C+  +++        
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSI---QAELRRLLKSKPYEN-CL--LVL----L--- 251

Query: 192 MLPKDLQDG-VLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAYQCL 250
               ++Q+     A ++                C+   L +  R         +     +
Sbjct: 252 ----NVQNAKAWNAFNLS---------------CK--IL-LTTRFKQVTDFLSAATTTHI 289

Query: 251 SGCDMNHGYGK---KHLWFIKWKFLQAKAAAYYYHGLILDKGNEPS--CHVSAVCCFLAA 305
           S    +        K L  +K+              L     + P      +     + A
Sbjct: 290 SLDHHSMTLTPDEVKSL-LLKY--------------LDCRPQDLPREVLTTNPRRLSIIA 334

Query: 306 EEI-----------------LAESKKACLTFSLAPPTTRS--------------PP---- 330
           E I                 L    ++ L   L P   R               P     
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLN-VLEPAEYRKMFDRLSVFPPSAHIPTILLS 393

Query: 331 -LWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQALPELPNFQLSLRP----------- 378
            +W  +      +  V +   +++ Y L E++  ++   +P+  L L+            
Sbjct: 394 LIWFDVIK--SDVMVVVN---KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448

Query: 379 --DNYELPEIDQAWNTEKWEIES---QTLKEHLKDCENNTRSD 416
             D+Y +P+   + +     ++      +  HLK+ E+  R  
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 3e-05
 Identities = 69/433 (15%), Positives = 129/433 (29%), Gaps = 120/433 (27%)

Query: 21  VVVYVPAIRIPLQ-SDLPRALKGVIPKELVDRLTCLRNQIVLVAEDTDGSAITELRRALE 79
           + V+  A        D+    K ++ KE +D        I++        A++   R   
Sbjct: 22  LSVFEDAFVDNFDCKDVQDMPKSILSKEEID-------HIIMS-----KDAVSGTLR--- 66

Query: 80  EYLTLLIGLTKKENGLEDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDAN 139
                L  L+K+E  ++  VE   +   +Y     F+ +          MM  + +   +
Sbjct: 67  -LFWTL--LSKQEEMVQKFVEEVLRI--NYK----FLMSPIKTEQRQPSMMTRMYIEQRD 117

Query: 140 SL-----MIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKNIIVHIPPDIKIMLP 194
            L     +  K        V       +    LL+         KN+++           
Sbjct: 118 RLYNDNQVFAKYN------VSRLQPYLKLRQALLELRP-----AKNVLID---------- 156

Query: 195 KDLQDGVLEAISIQALGQGTEIQLGLAVD-CQKAT-----------LSVKRRLACELLI- 241
                GVL        G G      +A+D C               L++K   + E ++ 
Sbjct: 157 -----GVL--------GSGKTW---VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 242 -----YYSQAYQCLSGCDMNHGYGKKHLWFIKWK--FLQAKAAAYYYHGL-ILDKGNEPS 293
                 Y       S  D +     +           L++K    Y + L +L       
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP---YENCLLVLLNVQNAK 257

Query: 294 CHVSA--VCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQ 351
              +A  + C     +IL  ++   +T  L+  TT    L     H   T+      KS 
Sbjct: 258 -AWNAFNLSC-----KILLTTRFKQVTDFLSAATTTHISL----DHHSMTLTPDEV-KSL 306

Query: 352 MYGYLLEEEKAL--QALPELPNFQLSL----------RPDNYELPEIDQAWNTEKWEIES 399
           +  YL    + L  + L   P  +LS+            DN++    D+     +  +  
Sbjct: 307 LLKYLDCRPQDLPREVLTTNP-RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365

Query: 400 QT---LKEHLKDC 409
                 ++     
Sbjct: 366 LEPAEYRKMFDRL 378

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 5e-05
 Identities = 42/278 (15%), Positives = 80/278 (28%), Gaps = 65/278 (23%)

Query: 171 SGYLEFCIKNIIVHIPPDIKIMLP-KDLQDGVLEAISIQA----LGQGTEI-QLGLAVD- 223
           +G  ++  K+I+             KD+QD     +S +     +     +         
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70

Query: 224 -CQKATLSVKRRLACELLIYY-----SQAYQCLSGCDMNHGYGKKH--LW-----FIKW- 269
              K    V++ +   L I Y         +      M   Y ++   L+     F K+ 
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130

Query: 270 -----KFLQAKAAAY--------YYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKAC 316
                 +L+ + A             G+    G+  +         +A +  L+   +  
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGV---LGSGKTW--------VALDVCLSYKVQCK 179

Query: 317 LTF-----SLAPPTTRSPPLWGAMKHL----HQTIPEVASRKSQMYGYLLEEEKALQALP 367
           + F     +L      SP     ++ L    +Q  P   SR        L        L 
Sbjct: 180 MDFKIFWLNLK--NCNSPET--VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 368 ELPNFQLSLRPDNYELPEIDQAWNTEKWE---IESQTL 402
            L    L  +P    L  +    N + W    +  + L
Sbjct: 236 RL----LKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	420
3rau_A	363	Tyrosine-protein phosphatase non-receptor type 23;	100.0
3c3r_A	380	Programmed cell death 6-interacting protein; ALIX	100.0
3r9m_A	376	BRO1 domain-containing protein BROX; protein bindi	100.0
1zb1_A	392	BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking	100.0
2xs1_A	704	Programmed cell death 6-interacting protein; prote	100.0

>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.2e-73  Score=575.12  Aligned_cols=321  Identities=17%  Similarity=0.166  Sum_probs=288.8

Q ss_pred             ceeeecCCCCCCCCCchHHHhhhhHHHH----------HHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHhhh
Q 036560           21 VVVYVPAIRIPLQSDLPRALKGVIPKEL----------VDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGLTK   90 (420)
Q Consensus        21 ~~l~iPglK~t~~vD~~~~L~~~I~~~y----------i~~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~qL~~l~~   90 (420)
                      |||.|| ||+|.+|||+.||++||.++|          |++|++||++++++..+     .++ ++.|.+||+||++|+.
T Consensus        10 pmi~l~-lK~t~~vd~~~~L~~~I~~~y~e~~~~~~~~l~~l~~LR~~~~~~~~~-----~~g-~~~L~~Yy~qL~~l~~   82 (363)
T 3rau_A           10 PMIWLD-LKEAGDFHFQPAVKKFVLKNYGENPEAYNEELKKLELLRQNAVRVPRD-----FEG-CSVLRKYLGQLHYLQS   82 (363)
T ss_dssp             CCCCCC-CCCEEEECCHHHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHHHTCCSS-----HHH-HHHHHHHHHHHHHHHH
T ss_pred             CccCCC-CCcCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCCCC-----HHH-HHHHHHHHHHHHHHHh
Confidence            689999 999999999999999999998          99999999999875433     222 6899999999999999


Q ss_pred             ccCC---CCCcceeEeecCCCCCCcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHH
Q 036560           91 KENG---LEDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLL  167 (420)
Q Consensus        91 kfp~---~~~~v~F~W~dsl~~~~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~f  167 (420)
                      |||.   .+.+|.|+|+|+|++  ++++++|++||++|||||||++ |||+          |+.++|.++||+|.||++|
T Consensus        83 rfp~~~~~~~~i~F~W~ds~~~--~~~~~~sl~fE~a~VLfNiaal-~s~~----------a~~~~r~~~~glK~A~~~f  149 (363)
T 3rau_A           83 RVPMGSGQEAAVPVTWTEIFSG--KSVAHEDIKYEQACILYNLGAL-HSML----------GAMDKRVSEEGMKVSCTHF  149 (363)
T ss_dssp             HSCCSTTCTTCCCEEEECTTTC--CEEEESCHHHHHHHHHHHHHHH-HHHH----------HHHSCCCSHHHHHHHHHHH
T ss_pred             cCCCCcccccceeEEeecccCC--ccccccCHHHHHHHHHHHHHHH-HHHH----------HHHhccCChHHHHHHHHHH
Confidence            9983   346899999999998  6899999999999999999999 9999          8889999999999999999


Q ss_pred             HHHhhHHHHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHH
Q 036560          168 LKASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAY  247 (420)
Q Consensus       168 q~AAG~F~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~~K~k~sliAkLA~q~~~~Y~~A~  247 (420)
                      |+|||+|+||++++.        ..|++||++++|++|+.+||||||||+|+||+.++ +++++|||||+|++++|++|+
T Consensus       150 q~AAG~f~~l~~~~~--------~~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~~~-~k~~liAkLa~q~~~~Y~~a~  220 (363)
T 3rau_A          150 QCAAGAFAYLREHFP--------QAYSVDMSRQILTLNVNLMLGQAQECLLEKSMLDN-RKSFLVARISAQVVDYYKEAC  220 (363)
T ss_dssp             HHHHHHHHHHHHHCC--------SCSSGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC--------CCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHH
Confidence            999999999999984        35788999999999999999999999999999986 699999999999999999999


Q ss_pred             HHhhcCCC---CCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 036560          248 QCLSGCDM---NHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPP  324 (420)
Q Consensus       248 ~~l~~~~~---~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p  324 (420)
                      +.+++.+.   .+.++++|+.|+++|..||+|+||||+|+.+.+   .++||++|+||+.|.+++++|.+.++.+     
T Consensus       221 ~~l~~~~~~~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e---~~k~GeaIa~L~~A~~~l~~a~~~~k~~-----  292 (363)
T 3rau_A          221 RALENPDTASLLGRIQKDWKKLVQMKIYYFAAVAHLHMGKQAEE---QQKFGERVAYFQSALDKLNEAIKLAKGQ-----  292 (363)
T ss_dssp             HHHTCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHHTTTC-----
T ss_pred             HHHhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhHHH---hhhHHHHHHHHHHHHHHHHHHHHHhcCC-----
Confidence            99987653   345778999999999999999999999999999   8999999999999999999999998732     


Q ss_pred             CCCCCCchhhhHHHHHhHHhHHHHhhhhcCcccccccccC--CCCCCCccccccCCCCCCC
Q 036560          325 TTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQ--ALPELPNFQLSLRPDNYEL  383 (420)
Q Consensus       325 ~~~~p~~~~~~k~l~~~i~~~~~~k~r~N~~IY~qe~vp~--~~p~lp~~~l~~~p~~~~l  383 (420)
                         ...+.+.++.+.++|.+.+.+++||||+|||+ +||+  ++|+++..+| ++|.||+.
T Consensus       293 ---~~~~~~~~~~~~~~i~~~l~~aekdNd~IY~~-~VP~~~~L~~i~~~~l-vk~~p~~~  348 (363)
T 3rau_A          293 ---PDTVQDALRFTMDVIGGKYNSAKKDNDFIYHE-AVPALDTLQPVKGAPL-VKPLPVNP  348 (363)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCCCGGGSCCCCCCCC-CCCCCCCT
T ss_pred             ---chhHHHHHHHHHHHHHHHHHHHHhccCcCCcc-cCCCccccCCCCCCcc-ccCCCCCc
Confidence               11234456778899999999999999999998 8885  6888888888 68877663

>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A

Probab=100.00  E-value=2.4e-72  Score=572.04  Aligned_cols=328  Identities=16%  Similarity=0.173  Sum_probs=298.5

Q ss_pred             ceeeecCCCCCCCCCchHHHhhhhHHHH-------------HHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHH
Q 036560           21 VVVYVPAIRIPLQSDLPRALKGVIPKEL-------------VDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIG   87 (420)
Q Consensus        21 ~~l~iPglK~t~~vD~~~~L~~~I~~~y-------------i~~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~qL~~   87 (420)
                      +|+.|| ||+|.+|||..+|++||.++|             |++|++||++++....+  .. .+ .++.|.+||+||.+
T Consensus        24 ~~l~~p-lK~t~~vd~~~~l~~~I~~~y~~~~e~~~~~~~~l~~l~~LR~~~~~~~~~--~~-~~-~~~~L~~Y~~~L~~   98 (380)
T 3c3r_A           24 TFISVQ-LKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLD--KH-EG-ALETLLRYYDQICS   98 (380)
T ss_dssp             CCCCCC-CCCBCCCCCHHHHHHHHHHHCCCCSSSTTSHHHHHHHHHHHHHHHHHSSCC--CS-HH-HHHHHHHHHHHHHH
T ss_pred             cccCCC-CCCCCcCChHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHHHHHhhcCCC--cC-hH-HHHHHHHHHHHHHH
Confidence            489999 999999999999999999885             89999999999764222  22 22 37899999999999


Q ss_pred             hhhccCC--CCCcceeEeecCCCC-----CCcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhH
Q 036560           88 LTKKENG--LEDLVEFKWKNLGDY-----GKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCK  160 (420)
Q Consensus        88 l~~kfp~--~~~~v~F~W~dsl~~-----~~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~egl  160 (420)
                      |+.|||.  .+.+|.|+|+|+|++     ++.+++++|++||++|||||||++ ||++          |..++|.++||+
T Consensus        99 l~~rfp~~~~~~~i~F~W~d~~~~~s~~~g~~~~~~~~l~fE~a~VLfNlgal-~s~~----------A~~~~r~~~egl  167 (380)
T 3c3r_A           99 IEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAAL-ASQI----------AAEQNLDNDEGL  167 (380)
T ss_dssp             HTTTTTCSSCCCCCCEEEECSSCCCCSSSCCCEEEESCHHHHHHHHHHHHHHH-HHHH----------HHTSCTTSHHHH
T ss_pred             HHcCCCCCCCccceeEEeecCCccccccCCCCceeeccHHHHHHHHHHHHHHH-HHHH----------HHHhcCCChHHH
Confidence            9999984  357899999999974     247899999999999999999999 9999          888999999999


Q ss_pred             HHHHHHHHHHhhHHHHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHH
Q 036560          161 REAVDLLLKASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELL  240 (420)
Q Consensus       161 K~A~~~fq~AAG~F~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~~K~k~sliAkLA~q~~  240 (420)
                      |.||++||+|||+|+||++++++.++    ..|++||++++|++|+.+||||||||+|+||+.++ +|+++|||||+|++
T Consensus       168 K~A~~~fq~AAG~f~~l~~~~l~~~~----~~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~~~-~k~~liAkLa~~~~  242 (380)
T 3c3r_A          168 KIAAKHYQFASGAFLHIKETVLSALS----REPTVDISPDTVGTLSLIMLAQAQEVFFLKATRDK-MKDAIIAKLANQAA  242 (380)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCS----SCCCTTTSHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccC----CCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhcC-CChhHHHHHHHHHH
Confidence            99999999999999999999998764    46789999999999999999999999999999985 79999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 036560          241 IYYSQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFS  320 (420)
Q Consensus       241 ~~Y~~A~~~l~~~~~~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~  320 (420)
                      ++|++|.+.+.   ..+.+++.|+.|+++|..+|+|+||||+|+.+.+   +++||++|+||+.|.++++++.+.++.|.
T Consensus       243 ~~Y~~A~~~l~---~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e---~~k~GeaIa~L~~A~~~l~~a~~~~~~~~  316 (380)
T 3c3r_A          243 DYFGDAFKQCQ---YKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQ---QKKFGEEIARLQHAAELIKTVASRYDEYV  316 (380)
T ss_dssp             HHHHHHHHHHT---TCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHHCTTTC
T ss_pred             HHHHHHHHHHc---ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cccHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence            99999999998   4567889999999999999999999999999999   99999999999999999999999886542


Q ss_pred             CCCCCCCCCCchhhhHHHHHhHHhHHHHhhhhcCccccccccc--CCCCCCCccccccCCCCCCCCCCCcccc
Q 036560          321 LAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKAL--QALPELPNFQLSLRPDNYELPEIDQAWN  391 (420)
Q Consensus       321 ~~~p~~~~p~~~~~~k~l~~~i~~~~~~k~r~N~~IY~qe~vp--~~~p~lp~~~l~~~p~~~~lp~~~~~w~  391 (420)
                                   .++.+.++|++.+.+++||||+|||+ +||  .++|+++.++| ++|+||++|+ ++.|+
T Consensus       317 -------------~l~~l~~~i~~~l~~a~kdNd~IY~e-~VP~~~~Lp~i~~~~l-vk~~~~~~p~-~~~~~  373 (380)
T 3c3r_A          317 -------------NVKDFSDKINRALAAAKKDNDFIYHD-RVPDLKDLDPIGKATL-VKSTPVNVPI-SQKFT  373 (380)
T ss_dssp             -------------CCHHHHHHHHHHHHHHHHHHHHTTCC-CCCCGGGSCCCCCCCC-CCCCCCCSCC-SSSCC
T ss_pred             -------------hHHHHHHHHHHHHHHHHHhhCeeccc-CCCCcccCCCCCCCce-ecccCCCCCC-ccchh
Confidence                         25789999999999999999999987 888  78999999999 8999999988 99996

>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A

Probab=100.00  E-value=8.5e-72  Score=567.29  Aligned_cols=346  Identities=20%  Similarity=0.298  Sum_probs=302.7

Q ss_pred             cCCCCCCCCCchHHHh--hhhHHHHHHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHhhhccCC------CCC
Q 036560           26 PAIRIPLQSDLPRALK--GVIPKELVDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGLTKKENG------LED   97 (420)
Q Consensus        26 PglK~t~~vD~~~~L~--~~I~~~yi~~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~qL~~l~~kfp~------~~~   97 (420)
                      | ||.|..|+|..-+.  +-.....+++++.+|++++.+.+++ +.+...++++|.+||++|++|..+|+.      ++.
T Consensus        11 ~-lk~T~~v~F~~~~~~~~~~~~~~~~~l~~~R~~l~~~~~~~-~~~~~~~~~~l~~Yl~~L~~l~~~~~~~~~~~~l~~   88 (376)
T 3r9m_A           11 P-LKATAPVSFNYYGVVTGPSASKICNDLRSSRARLLELFTDL-SCNPEMMKNAADSYFSLLQGFINSLDESTQESKLRY   88 (376)
T ss_dssp             C-CCCBCCCCCCCGGGBCSHHHHHHHHHHHHHHHHHHHHTTCT-TCCHHHHHHHHHHHHHHHGGGTBCSSCTTCBCTTTT
T ss_pred             C-CCCCceeeeeeeeecCCchHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhccccCCccccccc
Confidence            7 99999999963221  2223345999999999999988886 445677889999999999999998863      347


Q ss_pred             cceeEeecCCCCCCcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCccccc---ccCCChhhHHHHHHHHHHHhhHH
Q 036560           98 LVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLA---VRVLSSDCKREAVDLLLKASGYL  174 (420)
Q Consensus        98 ~v~F~W~dsl~~~~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~---~~r~s~eglK~A~~~fq~AAG~F  174 (420)
                      +|.|+|+|+|++ ..+++++|++||++|||||||++ |||+          |..   .+|.++||+|.||++||+|||+|
T Consensus        89 ~i~F~W~dsl~~-~~~~~~~sl~fE~a~VLfNiaal-~sq~----------A~~~~~~~r~~~e~lK~A~~~fq~AAG~f  156 (376)
T 3r9m_A           89 IQNFKWTDTLQG-QVPSAQQDAVFELISMGFNVALW-YTKY----------ASRLAGKENITEDEAKEVHRSLKIAAGIF  156 (376)
T ss_dssp             SCCEEECCTTST-TCCEEESCHHHHHHHHHHHHHHH-HHHH----------HHHHHTCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cceeEeeCCCCC-CCceecccHHHHHHHHHHHHHHH-HHHH----------HHHhhccccCChHHHHHHHHHHHHHHHHH
Confidence            899999999986 48899999999999999999999 9999          544   36889999999999999999999


Q ss_pred             HHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHHHHhhcCC
Q 036560          175 EFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAYQCLSGCD  254 (420)
Q Consensus       175 ~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~~K~k~sliAkLA~q~~~~Y~~A~~~l~~~~  254 (420)
                      +||++++++.+.+  ...|++||++++|++|+.+||||||||+|+||+.+ |+++++|||||+|++++|++|.+.+++. 
T Consensus       157 ~~l~~~~~~~~~~--~~~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~~-~~k~~liAKLa~q~~~~Y~~a~~~l~~~-  232 (376)
T 3r9m_A          157 KHLKESHLPKLIT--PAEKGRDLESRLIEAYVIQCQAEAQEVTIARAIEL-KHAPGLIAALAYETANFYQKADHTLSSL-  232 (376)
T ss_dssp             HHHHHHTGGGCSS--CCCTTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHHHHTTS-
T ss_pred             HHHHHhhhhcccC--CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            9999999987632  13578999999999999999999999999999998 5899999999999999999999999863 


Q ss_pred             CCCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCC--CCCCCCch
Q 036560          255 MNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPP--TTRSPPLW  332 (420)
Q Consensus       255 ~~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p--~~~~p~~~  332 (420)
                       .+.++.+|+.|+++|..||.|+||||+|+.+.+   +++||++|+||+.|.++++++.+.|++|....|  .+..|...
T Consensus       233 -~~~i~~~W~~~v~~K~~~~~A~A~y~~a~~~~~---~~k~GeaIa~L~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~  308 (376)
T 3r9m_A          233 -EPAYSAKWRKYLHLKMCFYTAYAYCYHGETLLA---SDKCGEAIRSLQEAEKLYAKAEALCKEYGETKGPGPTVKPSGH  308 (376)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCCGGGS
T ss_pred             -cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCChHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchh
Confidence             456778999999999999999999999999999   899999999999999999999999999987653  23333333


Q ss_pred             hhhHHHHHhHHhHHHHhhhhcCcccccccccCCCCCC---CccccccCCCCCCCCCCCcccccccc
Q 036560          333 GAMKHLHQTIPEVASRKSQMYGYLLEEEKALQALPEL---PNFQLSLRPDNYELPEIDQAWNTEKW  395 (420)
Q Consensus       333 ~~~k~l~~~i~~~~~~k~r~N~~IY~qe~vp~~~p~l---p~~~l~~~p~~~~lp~~~~~w~~~~~  395 (420)
                      ...+.+.+.|.+.+.+++||||+|||| +||+++|.+   |.|+| |+|+||++|++||.|+.+..
T Consensus       309 ~~~~~l~~~i~~~l~~a~kdNd~IY~~-~VP~~~p~~~~k~~~~l-vk~~~~~~p~~~~~w~~~~~  372 (376)
T 3r9m_A          309 LFFRKLGNLVKNTLEKCQRENGFIYFQ-KIPTEAPQLELKANYGL-VEPIPFEFPPTSVQWTPETL  372 (376)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCC-CCCSSCCCCCCCCSSCC-CCCCCCCCCCCCTTCCHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhhccceecc-cCCCCCCCcccccccce-ecCcCCCCCCCChhhhHHHH
Confidence            347788899999999999999999998 999999999   67999 89999999999999997643

>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-68  Score=542.42  Aligned_cols=305  Identities=13%  Similarity=0.099  Sum_probs=271.0

Q ss_pred             CCCCceeeecCCCCCCCCCchHHHhhhhHHHH------------HH-HHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHH
Q 036560           17 TIPEVVVYVPAIRIPLQSDLPRALKGVIPKEL------------VD-RLTCLRNQIVLVAEDTDGSAITELRRALEEYLT   83 (420)
Q Consensus        17 ~~~~~~l~iPglK~t~~vD~~~~L~~~I~~~y------------i~-~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~   83 (420)
                      .+..+|+.|| ||+|++|||..+|++||.++|            |. +|++||++++++..      ...++++|.+||+
T Consensus         5 ~m~~~~l~~p-lK~t~~vd~~~~L~~~I~~~y~~~~~~~~y~~~l~~~l~~lR~~~~~~~~------~~~~~~~l~~Y~~   77 (392)
T 1zb1_A            5 SMKPYLFDLK-LKDTEKLDWKKGLSSYLKKSYGSSQWRTFYDEKATSELDHLRNNANGELA------PSSLSEQNLKYYS   77 (392)
T ss_dssp             -CCCCCCCCC-CCCBCCCCHHHHHHHHHHHHSCTTTGGGGCCHHHHHHHHHHHHHTTSSCC------HHHHHHHHHHHHH
T ss_pred             hcccccccCC-CCCCCccCHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHhhcCCC------ChHHHHHHHHHHH
Confidence            4677899999 999999999999999998877            68 99999999976421      2334899999999


Q ss_pred             HHHHhhhccCC--CCCcceeEeecCCCC---CCcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChh
Q 036560           84 LLIGLTKKENG--LEDLVEFKWKNLGDY---GKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSD  158 (420)
Q Consensus        84 qL~~l~~kfp~--~~~~v~F~W~dsl~~---~~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~e  158 (420)
                      ||.+|+.|||.  .+.+|.|+|+|+|++   +..+++++|++||++|||||+|+| |||+          |..++|.   
T Consensus        78 ~L~~l~~rf~~~~~~~~i~F~W~d~l~~~~~~~~~~~~~~l~fE~a~vLfNlaal-~s~~----------A~~~~r~---  143 (392)
T 1zb1_A           78 FLEHLYFRLGSKGSRLKMDFTWYDAEYSSAQKGLKYTQHTLAFEKSCTLFNIAVI-FTQI----------ARENINE---  143 (392)
T ss_dssp             HHHHHHHHHGGGGGGGCCCEEEECCCCSSSCSSCEEEECCHHHHHHHHHHHHHHH-HHHH----------HHHTTTS---
T ss_pred             HHHHHHhcCCCCCCcccceeeeecccccccCCCCceeccchHHHHHHHHHHHHHH-HHHH----------HHHhchH---
Confidence            99999999983  357899999999962   138999999999999999999999 9999          7777775   


Q ss_pred             hHHHHHHHHHHHhhHHHHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhh--cccchhHHHHHH
Q 036560          159 CKREAVDLLLKASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDC--QKATLSVKRRLA  236 (420)
Q Consensus       159 glK~A~~~fq~AAG~F~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~--~K~k~sliAkLA  236 (420)
                      |+|.||++||+|||+|+||++++++        .|++||++++|++|+.+||||||||+|+||+.+  .++++++|||||
T Consensus       144 ~lk~A~~~fq~AAG~f~~l~~~~~~--------~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~~~~~~~k~~liAkLa  215 (392)
T 1zb1_A          144 DYKNSIANLTKAFSCFEYLSENFLN--------SPSVDLQSENTRFLANICHAEAQELFVLKLLNDQISSKQYTLISKLS  215 (392)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHCCC--------CSSGGGCHHHHHHHHHHHHHHHHHHHHHHHTTSTTGGGCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCC--------CCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCCchhHHHHHH
Confidence            8999999999999999999999963        578999999999999999999999999999984  258999999999


Q ss_pred             HHHHHHHHHHHHHhhcCC--CCCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 036560          237 CELLIYYSQAYQCLSGCD--MNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKK  314 (420)
Q Consensus       237 ~q~~~~Y~~A~~~l~~~~--~~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k  314 (420)
                      +|++++|++|.+.+.+.+  +.+.+++.|+.|+++|..+|+|+||||+|+.+.+   +++||++|+||+.|.++++++.+
T Consensus       216 ~~~~~~Y~~a~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e---~~k~GeaIa~L~~A~~~l~~a~~  292 (392)
T 1zb1_A          216 RATCNLFQKCHDFMKEIDDDVAIYGEPKWKTTVTCKLHFYKSLSAYYHGLHLEE---ENRVGEAIAFLDFSMQQLISSLP  292 (392)
T ss_dssp             HHHHHHHHHHHHHHHSCCCTTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCTTHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccchHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999887  4477899999999999999999999999999999   99999999999999999999998


Q ss_pred             HHhhccCCCCCCCCCCchhhhHHHHHhHHhHHHHhhhhcCcccccccccC
Q 036560          315 ACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQ  364 (420)
Q Consensus       315 ~~~~~~~~~p~~~~p~~~~~~k~l~~~i~~~~~~k~r~N~~IY~qe~vp~  364 (420)
                      .++.+.        +..  +++.+.++|++.+.+++||||+|||| +||+
T Consensus       293 ~~~~~~--------~~~--d~~~l~~~i~~~l~~a~kdNd~IY~e-~VP~  331 (392)
T 1zb1_A          293 FKTWLV--------EFI--DFDGFKETLEKKQKELIKDNDFIYHE-SVPA  331 (392)
T ss_dssp             GCTTTT--------TTS--CHHHHHHHHHHHHHHHHHHHHSSSCC-CCCS
T ss_pred             hhhccc--------hHH--HHHHHHHHHHHHHHHHHHHhCccCcC-CCCC
Confidence            765321        122  36799999999999999999999996 6663

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A

Probab=100.00  E-value=8.9e-67  Score=568.14  Aligned_cols=328  Identities=16%  Similarity=0.170  Sum_probs=295.7

Q ss_pred             ceeeecCCCCCCCCCchHHHhhhhHHHH-------------HHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHH
Q 036560           21 VVVYVPAIRIPLQSDLPRALKGVIPKEL-------------VDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIG   87 (420)
Q Consensus        21 ~~l~iPglK~t~~vD~~~~L~~~I~~~y-------------i~~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~qL~~   87 (420)
                      +|+.|| ||+|.+|||..+|++||.++|             |.+|++||++++....+  .. .+ .++.|.+||+||.+
T Consensus         9 ~~l~~p-lK~t~~vd~~~~l~~~I~~~y~~~~e~~~~~~~~l~~l~~lR~~~~~~~~~--~~-~~-~~~~L~~Y~~~L~~   83 (704)
T 2xs1_A            9 TFISVQ-LKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLD--KH-EG-ALETLLRYYDQICS   83 (704)
T ss_dssp             CCCCCC-CCCBCCCCSHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHHHHHTSCCC--CC-HH-HHHHHHHHHHHHHH
T ss_pred             HhhcCC-CCCCCcCCHHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHHHHHhhCCCC--CC-HH-HHHHHHHHHHHHHH
Confidence            589999 999999999999999999774             89999999998764222  12 22 27899999999999


Q ss_pred             hhhccCC--CCCcceeEeecCCCC-----CCcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhH
Q 036560           88 LTKKENG--LEDLVEFKWKNLGDY-----GKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCK  160 (420)
Q Consensus        88 l~~kfp~--~~~~v~F~W~dsl~~-----~~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~egl  160 (420)
                      |+.|||.  .+.+|.|+|+|+|++     ++.+++++|++||++|||||||++ ||++          |+.++|.+++|+
T Consensus        84 l~~rfp~~~~~~~i~F~W~d~~~~~s~~~~~~~~~~~~l~fE~a~vLfNlaal-~s~~----------A~~~~r~~~~~l  152 (704)
T 2xs1_A           84 IEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAAL-ASQI----------AAEQNLDNDEGL  152 (704)
T ss_dssp             HGGGSCTTTCSSCCCEEEECTTCCCSSSSSCCEEEECCHHHHHHHHHHHHHHH-HHHH----------HHTSCTTSHHHH
T ss_pred             HHcCCCCCCCcccceeeeecCcccccccCCCCceeeccHHHHHHHHHHHHHHH-HHHH----------HHHhCCCChHHH
Confidence            9999984  357899999999974     236899999999999999999999 9999          888999999999


Q ss_pred             HHHHHHHHHHhhHHHHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHH
Q 036560          161 REAVDLLLKASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELL  240 (420)
Q Consensus       161 K~A~~~fq~AAG~F~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~~K~k~sliAkLA~q~~  240 (420)
                      |.||++||+|||+|+||++++++.++    ..|++||++++|.+|+.+||||||||+|+||+.++ +++++|||||+|++
T Consensus       153 K~A~~~fq~AAG~f~~l~~~~l~~~~----~~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~~~-~k~~liAkLa~~~~  227 (704)
T 2xs1_A          153 KIAAKHYQFASGAFLHIKETVLSALS----REPTVDISPDTVGTLSLIMLAQAQEVFFLKATRDK-MKDAIIAKLANQAA  227 (704)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCS----SCCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccC----CCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHhcC-CChhHHHHHHHHHH
Confidence            99999999999999999999998764    46889999999999999999999999999999985 79999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 036560          241 IYYSQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFS  320 (420)
Q Consensus       241 ~~Y~~A~~~l~~~~~~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~  320 (420)
                      ++|++|.+.+.   +.+.++++|..|+++|..||+|+||||+|+.+.+   .++||++|+||+.|.++++++.+.++.| 
T Consensus       228 ~~Y~~A~~~l~---~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e---~~k~GeaIa~L~~A~~~l~~a~~~~~~~-  300 (704)
T 2xs1_A          228 DYFGDAFKQCQ---YKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQ---QYYFGEEIARLQHAAELIKTVASRYDEY-  300 (704)
T ss_dssp             HHHHHHHHHHH---TCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHHSTTT-
T ss_pred             HHHHHHHHHHc---ccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HhHHHHHHHHHHHHHHHHHHHHHHhcch-
Confidence            99999999998   4567889999999999999999999999999999   8999999999999999999999877544 


Q ss_pred             CCCCCCCCCCchhhhHHHHHhHHhHHHHhhhhcCcccccccccC--CCCCCCccccccCCCCCCCCCCCcccc
Q 036560          321 LAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQ--ALPELPNFQLSLRPDNYELPEIDQAWN  391 (420)
Q Consensus       321 ~~~p~~~~p~~~~~~k~l~~~i~~~~~~k~r~N~~IY~qe~vp~--~~p~lp~~~l~~~p~~~~lp~~~~~w~  391 (420)
                                  +.++.+.++|++.+.++.||||+|||+ +||+  ++|+++.++| ++|.||+.|. ++.|.
T Consensus       301 ------------~~~~~l~~~i~~~l~~~~kdNd~IY~e-~VP~~~~L~~i~~~~l-vk~~~~~~p~-~~~~~  358 (704)
T 2xs1_A          301 ------------VNVKDFSDKINRALAAAKKDNDFIYHD-RVPDLKDLDPIGKATL-VKSTPVNVPI-SQKFT  358 (704)
T ss_dssp             ------------CCCHHHHHHHHHHHHHHHHHHHHTTCC-CCCCGGGSCCCCCCCC-CCCCCCCSCC-STTCC
T ss_pred             ------------HhHHHHHHHHHHHHHHHHHhhCeeecc-CCCCccccCCccCccc-cccCCCCccc-ccchh
Confidence                        225689999999999999999999987 8885  8999999999 6999999975 88886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00