Citrus Sinensis ID: 036565

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
Protein Sequence
MKKWMCYKAMRGHEPRSSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAASSCAVLNDLCVGGSPAFSDLAACGDFFDSFSQNSLELNRVGDMYDFSQVPYM
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHccccccccccccccccHHHHHHHHHHHcccHHHHHHHccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccccccccccHHHHHHHHHHHcccccEcccccccccHHHHHHHHHHHcHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHccccccccccccccccccccccccccccccccccccHcccccccccccccccc
Coil and Loop (DISEMBL)
MKKWMCYKamrgheprsssscaACKLLkrkciptcifapyfrsdepkkfAKVHKVFGAsnvskiltevpeeqredTVNSLAYEAEarlrdpvygCIGAIALLQRKMIELQQDLAVARARLAryttpaasscavlndlcvggspafsdlaacgdffdsfsqnslelnrvgdmydfsqvpym
Flexible Loop (DISEMBL)
mkkwmcykamrgheprsssscaACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGasnvskiltevpeeqredTVNSLAYeaearlrdpVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAASSCAVLNDLCVGGSPAFSDLAACGDFFDSFSQNslelnrvgdmydfsqvpym
Low Complexity Region (SEG)
MKKWMCYKAMRGHEPRSSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAASSCAVLNDLCVGGSPAFSDLAACGDFFDSFSQNSLELNRVGDMYDFSQVPYM
Disordered region (IsUnstruct)
*****C**************CAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTE*********VNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAASSCAVLNDLCVGGSPAFSDLAACGDFFDSFSQNSLELNRVGDMYD*******
Disordered Region (DISOPRED)
***********************CKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARY**************************************************FSQVPY*
Disordered Region (DISEMBL)
MKKWMCYKA***********CAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV*********NSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAASSCAVLNDLCVGGSPAFSDLAACGDFFDSFSQNSLELNRVGDMYDFSQVPYM
Disordered Region (DISPRO)
**KWMCYKAMR****RSSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAASSCAVLND*CVGGSPAFSDLAACGDFFDSFSQNSL*LNRVGDMYDFSQVPYM
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKKWMCYKAMRGHEPRSSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAxxxxxxxxxxxxxxxxxxxxxLARYTTPAASSCAVLNDLCVGGSPAFSDLAACGDFFDSFSQNSLELNRVGDMYDFSQVPYM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	180	2.2.26 [Sep-21-2011]
Q9SRL8	165	LOB domain-containing pro	yes	no	0.9	0.981	0.620	2e-52
Q9FML4	186	Protein LATERAL ORGAN BOU	no	no	0.7	0.677	0.601	1e-38
Q9FKZ3	313	LOB domain-containing pro	no	no	0.622	0.357	0.625	4e-37
Q8L8Q3	159	LOB domain-containing pro	no	no	0.594	0.672	0.654	9e-37
Q32SG3	260	LOB domain-containing pro	N/A	no	0.594	0.411	0.626	1e-36
O64836	311	LOB domain-containing pro	no	no	0.622	0.360	0.598	2e-36
A1YKY7	269	Protein IAL1 OS=Zea mays	N/A	no	0.594	0.397	0.598	3e-36
Q8LQH4	269	LOB domain-containing pro	no	no	0.594	0.397	0.626	3e-36
A2WXT0	269	LOB domain-containing pro	N/A	no	0.594	0.397	0.626	3e-36
Q8LBW3	193	LOB domain-containing pro	no	no	0.572	0.533	0.650	2e-34

>sp|Q9SRL8|LBD21_ARATH LOB domain-containing protein 21 OS=Arabidopsis thaliana GN=LBD21 PE=2 SV=1

 Score =  204 bits (519), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/174 (62%), Positives = 125/174 (71%), Gaps = 12/174 (6%)

Query: 10  MRGHEPRSSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVP 69
           MRGHEPRSSSSCAACKLLKR+C PTCIFAPYFRS +   FAKVHKVFGASNVSK+L EVP
Sbjct: 1   MRGHEPRSSSSCAACKLLKRRCTPTCIFAPYFRSSDLITFAKVHKVFGASNVSKLLGEVP 60

Query: 70  EEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAAS 129
           EEQR++TVNSLAYEAE RL+DPVYGCIGAIA LQ+KM+ELQ DLAVAR RL  ++    S
Sbjct: 61  EEQRQETVNSLAYEAEVRLKDPVYGCIGAIASLQKKMLELQHDLAVARTRLLAHSGVNNS 120

Query: 130 SCAVLNDLCVGGSP---AFSDLAACGDFFDSFSQNSLELNRVGDMYDFSQVPYM 180
             + L+D     SP   AF DL    D        +L+      +YD  Q P++
Sbjct: 121 QVSPLDD-----SPELAAFLDLVPYSDLMLLDGSTNLD----AYLYDLGQPPFV 165

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FML4|LOB_ARATH Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1

 Score =  159 bits (401), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 77/128 (60%), Positives = 95/128 (74%), Gaps = 2/128 (1%)

Query: 18  SSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTV 77
           +S CAACK L+RKC+P CIFAPYF  +EP KFA VHK+FGASNV+K+L E+   QRED V
Sbjct: 9   NSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAV 68

Query: 78  NSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARY--TTPAASSCAVLN 135
           NSLAYEAEAR+RDPVYGC+GAI+ LQR++  LQ++L  A A LA Y  +T AA +   + 
Sbjct: 69  NSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAGAPGNVV 128

Query: 136 DLCVGGSP 143
           DL     P
Sbjct: 129 DLVFQPQP 136

Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKZ3|LBD36_ARATH LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1

 Score =  154 bits (388), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 70/112 (62%), Positives = 85/112 (75%)

Query: 17  SSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDT 76
           SSS CAACK L+RKC   C+FAPYF  D+P+KFA VHKVFGASNV+K+L E+   QRED 
Sbjct: 4   SSSPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDA 63

Query: 77  VNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAA 128
           VNSL YEAEARLRDPVYGC+G I++LQ ++ ++  DL  A+  LA Y  P A
Sbjct: 64  VNSLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKELATYVGPQA 115

Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L8Q3|LBD25_ARATH LOB domain-containing protein 25 OS=Arabidopsis thaliana GN=LBD25 PE=2 SV=3

 Score =  152 bits (385), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 70/107 (65%), Positives = 86/107 (80%)

Query: 17  SSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDT 76
           ++S CAACK L+RKC   C+FAPYF  +EP KFA VH++FGASNVSKIL EV   QRED 
Sbjct: 36  TNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDA 95

Query: 77  VNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARY 123
           VNSLAYEAEARL+DPVYGC+GAI++LQR+++ LQ++L    A L RY
Sbjct: 96  VNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRY 142

Arabidopsis thaliana (taxid: 3702)

>sp|Q32SG3|LBD6_MAIZE LOB domain-containing protein 6 OS=Zea mays GN=LBD6 PE=1 SV=1

 Score =  152 bits (384), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 67/107 (62%), Positives = 84/107 (78%)

Query: 17  SSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDT 76
           + S CAACK L+RKC P C+FAPYF  D P+KF  VH+VFGASNV+K+L E+   QRED 
Sbjct: 30  TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQREDA 89

Query: 77  VNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARY 123
           VNSLAYEA+ RLRDPVYGC+G I++LQ  + +LQQDLA A+  L++Y
Sbjct: 90  VNSLAYEADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKY 136

Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes.

Zea mays (taxid: 4577)

>sp|O64836|LBD10_ARATH LOB domain-containing protein 10 OS=Arabidopsis thaliana GN=LBD10 PE=2 SV=1

 Score =  151 bits (382), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 67/112 (59%), Positives = 86/112 (76%)

Query: 17  SSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDT 76
           +S+ CAACKLL+RKC   C+FAPYF    P+KF  VH+VFGASNV+KIL ++P +QREDT
Sbjct: 2   ASTPCAACKLLRRKCTQECVFAPYFPPTNPQKFIFVHRVFGASNVTKILNDLPPDQREDT 61

Query: 77  VNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAA 128
           VNSL YEAEAR+RDP+YGC+G I+ LQ+ + ++QQDL  A+  L  Y  P A
Sbjct: 62  VNSLFYEAEARIRDPIYGCVGLISFLQQYLKKIQQDLLTAKEELVGYLGPDA 113

Arabidopsis thaliana (taxid: 3702)

>sp|A1YKY7|IAL1_MAIZE Protein IAL1 OS=Zea mays PE=2 SV=1

 Score =  150 bits (380), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 64/107 (59%), Positives = 85/107 (79%)

Query: 17  SSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDT 76
           + S CAACK L+RKC P C+FAPYF  D P+KF +VH+VFGASNV+K++ E+   QRED 
Sbjct: 30  TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVRVHRVFGASNVTKLMNEIHPLQREDA 89

Query: 77  VNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARY 123
           +NSLAYEA+ R+RDPVYGC+G I++LQ  + +LQQDLA A+  L++Y
Sbjct: 90  MNSLAYEADMRIRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKY 136

Zea mays (taxid: 4577)

>sp|Q8LQH4|LBD6_ORYSJ LOB domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=LBD6 PE=2 SV=1

 Score =  150 bits (380), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 67/107 (62%), Positives = 84/107 (78%)

Query: 17  SSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDT 76
           + S CAACK L+RKC P C+FAPYF  D P+KF  VH+VFGASNV+K+L E+   QRED 
Sbjct: 35  TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDA 94

Query: 77  VNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARY 123
           VNSLAYEA+ RLRDPVYGC+  I++LQR + +LQQDLA A+  L++Y
Sbjct: 95  VNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKY 141

Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2WXT0|LBD6_ORYSI LOB domain-containing protein 6 OS=Oryza sativa subsp. indica GN=LBD6 PE=3 SV=1

 Score =  150 bits (380), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 67/107 (62%), Positives = 84/107 (78%)

Query: 17  SSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDT 76
           + S CAACK L+RKC P C+FAPYF  D P+KF  VH+VFGASNV+K+L E+   QRED 
Sbjct: 35  TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDA 94

Query: 77  VNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARY 123
           VNSLAYEA+ RLRDPVYGC+  I++LQR + +LQQDLA A+  L++Y
Sbjct: 95  VNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKY 141

Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q8LBW3|LBD12_ARATH LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2

 Score =  145 bits (365), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 67/103 (65%), Positives = 82/103 (79%)

Query: 18  SSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTV 77
           SS CA+CKLL+R+C   CIFAPYF  D+P KFA VHKVFGASNVSK+L E+P  QR D V
Sbjct: 6   SSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 65

Query: 78  NSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARL 120
           NSL +EA AR+RDPVYGC+GAI+ LQ ++ +LQ  LAVA+A +
Sbjct: 66  NSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEI 108

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
225448503	171	PREDICTED: LOB domain-containing protein	0.927	0.976	0.744	2e-67
255574828	176	LOB domain-containing protein, putative	0.95	0.971	0.702	1e-60
356551405	182	PREDICTED: LOB domain-containing protein	0.938	0.928	0.661	2e-57
449441290	172	PREDICTED: LOB domain-containing protein	0.927	0.970	0.690	2e-56
449499132	167	PREDICTED: LOB domain-containing protein	0.922	0.994	0.694	9e-56
357492767	177	LOB domain-containing protein [Medicago	0.933	0.949	0.659	1e-55
351721976	189	uncharacterized protein LOC100305534 [Gl	0.977	0.931	0.632	2e-55
356568164	179	PREDICTED: LOB domain-containing protein	0.95	0.955	0.674	2e-55
217072474	177	unknown [Medicago truncatula] gi|3884992	0.933	0.949	0.653	2e-54
118482223	163	unknown [Populus trichocarpa]	0.888	0.981	0.705	2e-53

>gi|225448503|ref|XP_002272821.1| PREDICTED: LOB domain-containing protein 21 [Vitis vinifera] gi|297736578|emb|CBI25449.3| unnamed protein product [Vitis vinifera]

 Score =  259 bits (663), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 128/172 (74%), Positives = 142/172 (82%), Gaps = 5/172 (2%)

Query: 10  MRGHEPRSSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVP 69
           M+GHEPRSSSSCAACK LKR+C P CIFAPYFRSDEPKKFAKVHKVFGASNVSKIL EVP
Sbjct: 1   MKGHEPRSSSSCAACKFLKRRCTPNCIFAPYFRSDEPKKFAKVHKVFGASNVSKILVEVP 60

Query: 70  EEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAAS 129
           EEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKM+ELQ DLA+ARARLARYT PA+S
Sbjct: 61  EEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAIARARLARYTMPASS 120

Query: 130 SCAVLN-DLCVGGSPAFSDLAACGDFFDSFSQ-NSLELNRVGDMYDFSQVPY 179
           + ++ +  L + G   F D   C   FD FS  NS+ELN+   + DFSQ P+
Sbjct: 121 TSSIFHGSLAMAG---FQDFPGCSGIFDGFSHLNSMELNQPVAINDFSQPPF 169

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574828|ref|XP_002528321.1| LOB domain-containing protein, putative [Ricinus communis] gi|223532276|gb|EEF34079.1| LOB domain-containing protein, putative [Ricinus communis]

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 123/175 (70%), Positives = 140/175 (80%), Gaps = 4/175 (2%)

Query: 10  MRGHEPRSSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVP 69
           MR +EPRSSSSCAACK LKR+CIP CIFAPYFRSDEPKKFA+VHK+FGASNVSKIL EVP
Sbjct: 1   MRSNEPRSSSSCAACKFLKRRCIPNCIFAPYFRSDEPKKFARVHKIFGASNVSKILIEVP 60

Query: 70  EEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAAS 129
           EEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKM+ELQ DLA+A+ARLARYT  ++S
Sbjct: 61  EEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQVDLAIAKARLARYTAISSS 120

Query: 130 SCAVLNDLCVGGSP---AFSDLAACGDF-FDSFSQNSLELNRVGDMYDFSQVPYM 180
             +      +       AF++  ACG    DSFSQ S EL++   + DFSQ PY+
Sbjct: 121 FSSASTASILSDRSSLAAFNEFPACGGMVVDSFSQTSSELSQDRVVNDFSQFPYI 175

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551405|ref|XP_003544066.1| PREDICTED: LOB domain-containing protein 21-like [Glycine max]

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 121/183 (66%), Positives = 136/183 (74%), Gaps = 14/183 (7%)

Query: 10  MRGHEPRSSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVP 69
           M+G+EPRSSSSCAACK LKR+CIP CIFAPYFRSDE KKFAKVHKVFGASNVSKIL EVP
Sbjct: 1   MKGYEPRSSSSCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILVEVP 60

Query: 70  EEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARY--TTPA 127
           EEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKM+ELQ DLA+A+ RLARY      
Sbjct: 61  EEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAIAKDRLARYTAAATT 120

Query: 128 ASSCAVLNDLCVGGS---PAFSDLAACGDFFD-------SFSQNSLELNRVGDMYDFSQV 177
           A++    +D  + G    P F D   C D F+       S SQ+S   +   D  DF Q+
Sbjct: 121 ATATTTTSDALINGHVSLPPFPDFFTCADNFNNDNFCHTSSSQSSFTRHETVD--DFIQI 178

Query: 178 PYM 180
           PY+
Sbjct: 179 PYI 181

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441290|ref|XP_004138415.1| PREDICTED: LOB domain-containing protein 21-like isoform 1 [Cucumis sativus] gi|449441292|ref|XP_004138416.1| PREDICTED: LOB domain-containing protein 21-like isoform 2 [Cucumis sativus] gi|449499124|ref|XP_004160728.1| PREDICTED: LOB domain-containing protein 21-like isoform 1 [Cucumis sativus] gi|449499130|ref|XP_004160729.1| PREDICTED: LOB domain-containing protein 21-like isoform 2 [Cucumis sativus]

 Score =  223 bits (569), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 118/171 (69%), Positives = 135/171 (78%), Gaps = 4/171 (2%)

Query: 10  MRG-HEPRSSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 68
           MRG HE RSSSSCAACKLLKR+CIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV
Sbjct: 1   MRGWHETRSSSSCAACKLLKRRCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60

Query: 69  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAA 128
           PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQ KM+ELQ DLA+A+ARLARY     
Sbjct: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLALAKARLARYAN-NN 119

Query: 129 SSCAVLNDLCVGGSPAFSDLAACGDFFDSFSQNSLELNRVGDMYDFSQVPY 179
           +S +  +  CV       +++  G  F +   +S ++ + G + DF+  PY
Sbjct: 120 TSSSSSSSSCVEN--CVVNMSYGGLSFSAEQSSSDDITQYGYLCDFTHFPY 168

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449499132|ref|XP_004160730.1| PREDICTED: LOB domain-containing protein 21-like isoform 3 [Cucumis sativus]

 Score =  221 bits (563), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 118/170 (69%), Positives = 134/170 (78%), Gaps = 4/170 (2%)

Query: 10  MRG-HEPRSSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 68
           MRG HE RSSSSCAACKLLKR+CIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV
Sbjct: 1   MRGWHETRSSSSCAACKLLKRRCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60

Query: 69  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAA 128
           PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQ KM+ELQ DLA+A+ARLARY     
Sbjct: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLALAKARLARYANNNT 120

Query: 129 SSCAVLNDLCVGGSPAFSDLAACGDFFDSFSQNSLELNRVGDMYDFSQVP 178
           SS +  +  CV       +++  G  F +   +S ++ + G + DF+  P
Sbjct: 121 SS-SSSSSSCVEN--CVVNMSYGGLSFSAEQSSSDDITQYGYLCDFTHFP 167

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357492767|ref|XP_003616672.1| LOB domain-containing protein [Medicago truncatula] gi|355518007|gb|AES99630.1| LOB domain-containing protein [Medicago truncatula]

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 118/179 (65%), Positives = 134/179 (74%), Gaps = 11/179 (6%)

Query: 10  MRGHEPRSSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVP 69
           M+G+EPRSSSSCAACK LKR+CIP CIFAPYFRSDE KKFAKVHKVFGASNVSKIL EVP
Sbjct: 1   MKGYEPRSSSSCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVP 60

Query: 70  EEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLAR----YTT 125
           EEQRE+TVNSLAYEA+ARLRDPVYGCIGAIALLQRKM+ELQ DLA+A+ RLAR      T
Sbjct: 61  EEQREETVNSLAYEADARLRDPVYGCIGAIALLQRKMVELQHDLAIAKDRLARCAAAAAT 120

Query: 126 PAASSCAVLNDLCVGGS--PAFSDLAACGDFFDSF--SQNSLELNRVGDMYDFSQVPYM 180
           P +S     ND+       P F +   C DF D+   S +S    R   + DF Q+PY+
Sbjct: 121 PTSS---FSNDMMNSNVSLPPFPEFFTCSDFSDNLSHSSSSQSFTRNETVDDFVQIPYI 176

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721976|ref|NP_001236716.1| uncharacterized protein LOC100305534 [Glycine max] gi|255625829|gb|ACU13259.1| unknown [Glycine max]

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 119/188 (63%), Positives = 136/188 (72%), Gaps = 12/188 (6%)

Query: 5   MCYKAMRGHEPRSSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKI 64
           M  + M+G+EPRSSSSCAACKLLKR+CIP CIFAPYFRSDE KKFAKVHKVFGASNVSKI
Sbjct: 1   MLVRGMKGYEPRSSSSCAACKLLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKI 60

Query: 65  LTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYT 124
           L EVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKM+ELQ DL +A+ RLAR  
Sbjct: 61  LIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLVIAKDRLARCH 120

Query: 125 TPAASSCAVLNDLCVGGS---------PAFSDL-AACGDFFDSF--SQNSLELNRVGDMY 172
             A ++        +            P F D   +  DF D F  S +S  L+R   + 
Sbjct: 121 AAATAAATTTTTTSIPSPDILHANVSLPPFPDFYTSSSDFNDIFCHSSSSQLLSRHETVD 180

Query: 173 DFSQVPYM 180
           DF+Q+PY+
Sbjct: 181 DFNQIPYI 188

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568164|ref|XP_003552283.1| PREDICTED: LOB domain-containing protein 21-like [Glycine max]

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 120/178 (67%), Positives = 137/178 (76%), Gaps = 7/178 (3%)

Query: 10  MRGHEPRSSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVP 69
           M+G+EPRSSSSCAACKLLKR+CIP CIFAPYFRSDE KKFAKVHKVFGASNVSKIL EVP
Sbjct: 1   MKGYEPRSSSSCAACKLLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVP 60

Query: 70  EEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAAS 129
           EEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKM+ELQ DLA+A+ RLAR    AA+
Sbjct: 61  EEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAIAKDRLARCHAAAAA 120

Query: 130 SCAVLNDLCVGGS----PAFSDL-AACGDFFDSF--SQNSLELNRVGDMYDFSQVPYM 180
           +   +    +  +    P F D   +  DF D F  S +S  L R   + DF+Q+PY+
Sbjct: 121 ATTTIPSPDILHANVSLPPFPDFCTSSSDFNDIFCHSSSSQLLGRHETVDDFNQIPYI 178

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072474|gb|ACJ84597.1| unknown [Medicago truncatula] gi|388499208|gb|AFK37670.1| unknown [Medicago truncatula]

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 117/179 (65%), Positives = 133/179 (74%), Gaps = 11/179 (6%)

Query: 10  MRGHEPRSSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVP 69
           M+G+EPRSSSSCAACK LKR+CIP CIFAPYFRSDE KKFAKVHKVFGASNVSKIL EVP
Sbjct: 1   MKGYEPRSSSSCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVP 60

Query: 70  EEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARL----ARYTT 125
           EEQRE+TVNSLAYEA+ARLRDPVYGCIGAIALLQRKM+ELQ DLA+A+ RL    A   T
Sbjct: 61  EEQREETVNSLAYEADARLRDPVYGCIGAIALLQRKMVELQHDLAIAKDRLARRAAAAAT 120

Query: 126 PAASSCAVLNDLCVGGS--PAFSDLAACGDFFDSF--SQNSLELNRVGDMYDFSQVPYM 180
           P +S     ND+       P F +   C DF D+   S +S    R   + DF Q+PY+
Sbjct: 121 PTSS---FSNDMMNSNVSLPPFPEFFTCSDFSDNLSHSSSSQSFTRNETVDDFVQIPYI 176

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482223|gb|ABK93040.1| unknown [Populus trichocarpa]

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 122/173 (70%), Positives = 136/173 (78%), Gaps = 13/173 (7%)

Query: 10  MRGHEPRSSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVP 69
           MR  EPR+SSSCAACK LKR+C P CIFAPYFRSDEPKKFA+VHKVFGASNVSKIL EVP
Sbjct: 1   MRNQEPRASSSCAACKFLKRRCTPNCIFAPYFRSDEPKKFARVHKVFGASNVSKILIEVP 60

Query: 70  EEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAAS 129
           EEQREDTVNSLAYEAEARL DPVYGCIGAIALLQRKM+ELQ DLA+ARARLARY     +
Sbjct: 61  EEQREDTVNSLAYEAEARLTDPVYGCIGAIALLQRKMVELQVDLAIARARLARYAA---N 117

Query: 130 SCAVLNDLCVGGS--PAFSDLAACGDFFDSFSQNSLELNRVGDMYDFSQVPYM 180
           S  +LND    GS  P  ++  ACG   DSF+Q+S +      M DFSQ P++
Sbjct: 118 SPPILND---HGSMIPTLAEFPACGGLVDSFNQSSSDT-----MNDFSQFPFI 162

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
TAIR|locus:2074648	165	LBD21 "LOB domain-containing p	0.9	0.981	0.626	2.9e-48
TAIR|locus:2174989	313	ASL1 "ASYMMETRIC LEAVES 2-like	0.622	0.357	0.625	9.3e-38
TAIR|locus:2046817	311	LBD10 "LOB domain-containing p	0.622	0.360	0.598	7.2e-36
TAIR|locus:2161982	186	LOB "LATERAL ORGAN BOUNDARIES"	0.7	0.677	0.601	7.2e-36
UNIPROTKB|Q32SG3	260	LBD6 "LOB domain-containing pr	0.644	0.446	0.603	4e-35
TAIR|locus:2034163	199	AS2 "ASYMMETRIC LEAVES 2" [Ara	0.594	0.537	0.635	5.1e-35
TAIR|locus:2089184	159	LBD25 "LOB domain-containing p	0.594	0.672	0.654	5.1e-35
TAIR|locus:2060842	193	ASL5 [Arabidopsis thaliana (ta	0.572	0.533	0.650	8.5e-33
TAIR|locus:2061828	224	LBD15 "LOB domain-containing p	0.572	0.459	0.621	1.6e-31
TAIR|locus:2197500	172	LBD4 "LOB domain-containing pr	0.577	0.604	0.596	2.6e-31

TAIR|locus:2074648 LBD21 "LOB domain-containing protein 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 109/174 (62%), Positives = 125/174 (71%)

Query:    10 MRGHEPRSSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVP 69
             MRGHEPRSSSSCAACKLLKR+C PTCIFAPYFRS +   FAKVHKVFGASNVSK+L EVP
Sbjct:     1 MRGHEPRSSSSCAACKLLKRRCTPTCIFAPYFRSSDLITFAKVHKVFGASNVSKLLGEVP 60

Query:    70 EEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAAS 129
             EEQR++TVNSLAYEAE RL+DPVYGCIGAIA LQ+KM+ELQ DLAVAR RL  ++    S
Sbjct:    61 EEQRQETVNSLAYEAEVRLKDPVYGCIGAIASLQKKMLELQHDLAVARTRLLAHSGVNNS 120

Query:   130 SCAVLNDLCVGGSP---AFSDLAACGDFFDSFSQNSLELNRVGDMYDFSQVPYM 180
               + L+D     SP   AF DL    D        S  L+    +YD  Q P++
Sbjct:   121 QVSPLDD-----SPELAAFLDLVPYSDLM--LLDGSTNLDAY--LYDLGQPPFV 165

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2174989 ASL1 "ASYMMETRIC LEAVES 2-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 9.3e-38, Sum P(2) = 9.3e-38
 Identities = 70/112 (62%), Positives = 85/112 (75%)

Query:    17 SSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDT 76
             SSS CAACK L+RKC   C+FAPYF  D+P+KFA VHKVFGASNV+K+L E+   QRED 
Sbjct:     4 SSSPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDA 63

Query:    77 VNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAA 128
             VNSL YEAEARLRDPVYGC+G I++LQ ++ ++  DL  A+  LA Y  P A
Sbjct:    64 VNSLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKELATYVGPQA 115

GO:0005634 "nucleus" evidence=ISM

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0009954 "proximal/distal pattern formation" evidence=IGI

GO:0048441 "petal development" evidence=IGI

TAIR|locus:2046817 LBD10 "LOB domain-containing protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 7.2e-36, Sum P(2) = 7.2e-36
 Identities = 67/112 (59%), Positives = 86/112 (76%)

Query:    17 SSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDT 76
             +S+ CAACKLL+RKC   C+FAPYF    P+KF  VH+VFGASNV+KIL ++P +QREDT
Sbjct:     2 ASTPCAACKLLRRKCTQECVFAPYFPPTNPQKFIFVHRVFGASNVTKILNDLPPDQREDT 61

Query:    77 VNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAA 128
             VNSL YEAEAR+RDP+YGC+G I+ LQ+ + ++QQDL  A+  L  Y  P A
Sbjct:    62 VNSLFYEAEARIRDPIYGCVGLISFLQQYLKKIQQDLLTAKEELVGYLGPDA 113

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2161982 LOB "LATERAL ORGAN BOUNDARIES" [Arabidopsis thaliana (taxid:3702)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 77/128 (60%), Positives = 95/128 (74%)

Query:    18 SSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTV 77
             +S CAACK L+RKC+P CIFAPYF  +EP KFA VHK+FGASNV+K+L E+   QRED V
Sbjct:     9 NSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAV 68

Query:    78 NSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARY--TTPAASSCAVLN 135
             NSLAYEAEAR+RDPVYGC+GAI+ LQR++  LQ++L  A A LA Y  +T AA +   + 
Sbjct:    69 NSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAGAPGNVV 128

Query:   136 DLCVGGSP 143
             DL     P
Sbjct:   129 DLVFQPQP 136

GO:0005634 "nucleus" evidence=ISM

GO:0010199 "organ boundary specification between lateral organs and the meristem" evidence=IMP

UNIPROTKB|Q32SG3 LBD6 "LOB domain-containing protein 6" [Zea mays (taxid:4577)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 70/116 (60%), Positives = 89/116 (76%)

Query:    17 SSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDT 76
             + S CAACK L+RKC P C+FAPYF  D P+KF  VH+VFGASNV+K+L E+   QRED 
Sbjct:    30 TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQREDA 89

Query:    77 VNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAASSCA 132
             VNSLAYEA+ RLRDPVYGC+G I++LQ  + +LQQDLA A+  L++Y   AA+S +
Sbjct:    90 VNSLAYEADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKYQAAAAASAS 145

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2034163 AS2 "ASYMMETRIC LEAVES 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 68/107 (63%), Positives = 88/107 (82%)

Query:    17 SSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDT 76
             ++S CAACK L+RKC P C+FAPYF  D+P+KFA VHKVFGASNV+K+L E+   QRED 
Sbjct:     6 TNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQREDA 65

Query:    77 VNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARY 123
             VNSLAYEA+ RLRDPVYGC+G I+LLQ ++ +LQ DL+ A++ L++Y
Sbjct:    66 VNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKY 112

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009799 "specification of symmetry" evidence=IMP

GO:0009954 "proximal/distal pattern formation" evidence=IGI

GO:0048441 "petal development" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0005654 "nucleoplasm" evidence=IDA

GO:0009943 "adaxial/abaxial axis specification" evidence=IMP

TAIR|locus:2089184 LBD25 "LOB domain-containing protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 70/107 (65%), Positives = 86/107 (80%)

Query:    17 SSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDT 76
             ++S CAACK L+RKC   C+FAPYF  +EP KFA VH++FGASNVSKIL EV   QRED 
Sbjct:    36 TNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDA 95

Query:    77 VNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARY 123
             VNSLAYEAEARL+DPVYGC+GAI++LQR+++ LQ++L    A L RY
Sbjct:    96 VNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRY 142

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2060842 ASL5 [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 67/103 (65%), Positives = 82/103 (79%)

Query:    18 SSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTV 77
             SS CA+CKLL+R+C   CIFAPYF  D+P KFA VHKVFGASNVSK+L E+P  QR D V
Sbjct:     6 SSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 65

Query:    78 NSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARL 120
             NSL +EA AR+RDPVYGC+GAI+ LQ ++ +LQ  LAVA+A +
Sbjct:    66 NSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEI 108

GO:0005634 "nucleus" evidence=ISM

GO:0003677 "DNA binding" evidence=TAS

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0010016 "shoot system morphogenesis" evidence=IMP

TAIR|locus:2061828 LBD15 "LOB domain-containing protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 64/103 (62%), Positives = 77/103 (74%)

Query:    21 CAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSL 80
             CAACKLL+R+C   C F+PYF   EP KFA VHKVFGASNVSK+L EVPE QR D  NSL
Sbjct:    46 CAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANSL 105

Query:    81 AYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARY 123
              YEA  RLRDPVYGC+GAI+ LQ+++  LQ +L   R+ + +Y
Sbjct:   106 VYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKY 148

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2197500 LBD4 "LOB domain-containing protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 62/104 (59%), Positives = 85/104 (81%)

Query:    17 SSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDT 76
             ++S CAACKLL+R+C   C+F+PYF +DEP+KFA VH+VFGASNV+K+L E+P  QR D 
Sbjct:    10 AASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDA 69

Query:    77 VNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARL 120
             V+S+ YEA AR+RDPVYGC+GAI+ LQ+++  LQ  LA+A+A +
Sbjct:    70 VSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEV 113

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SRL8	LBD21_ARATH	No assigned EC number	0.6206	0.9	0.9818	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00029332001 SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (171 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	180
pfam03195	101	pfam03195, DUF260, Protein of unknown function DUF	8e-48

>gnl|CDD|190559 pfam03195, DUF260, Protein of unknown function DUF260

 Score =  150 bits (382), Expect = 8e-48
 Identities = 58/101 (57%), Positives = 80/101 (79%)

Query: 20  SCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNS 79
            CAACK L+RKC P C+ APYF +++P +FA VHK+FGASNV+K+L  +P EQR+D + S
Sbjct: 1   PCAACKHLRRKCPPDCVLAPYFPAEQPARFANVHKLFGASNVTKLLKALPPEQRDDAMRS 60

Query: 80  LAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARL 120
           L YEA+AR RDPVYGC+G I  LQ+++ +LQ +LA+ +A+L
Sbjct: 61  LLYEADARARDPVYGCVGVIWSLQQQLEQLQAELALVKAQL 101

Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	180
PF03195	101	DUF260: Protein of unknown function DUF260; InterP	100.0
COG3416	233	Uncharacterized protein conserved in bacteria [Fun	85.46

>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function

Probab=100.00  E-value=1.1e-50  Score=308.42  Aligned_cols=101  Identities=60%  Similarity=1.134  Sum_probs=99.7

Q ss_pred             CcHHhHHhhhcCCCCCccCCCCCCCChhHHHHHHHhhccchHHHHhhcCCCccchhHHHHHHHHHhhhccCCCcchHHHH
Q 036565           20 SCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAI   99 (180)
Q Consensus        20 ~CAACK~lRRkC~~~Ci~APYFP~~~~~~F~~vhkvFG~snv~k~L~~lp~~~R~~a~~SL~YEA~aR~rDPVyGc~G~I   99 (180)
                      +|||||||||||+++|+||||||++++++|++||||||++||+|||+++|+++|+++|+||+|||++|.+||||||+|+|
T Consensus         1 ~CaaCk~lRr~C~~~C~laPyFP~~~~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~i   80 (101)
T PF03195_consen    1 PCAACKHLRRRCSPDCVLAPYFPADQPQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGII   80 (101)
T ss_pred             CChHHHHHhCCCCCCCcCCCCCChhHHHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 036565          100 ALLQRKMIELQQDLAVARARL  120 (180)
Q Consensus       100 ~~Lq~qi~~lq~eLa~~~~~L  120 (180)
                      +.||+||+++++||+.++++|
T Consensus        81 ~~L~~ql~~~~~el~~~~~~l  101 (101)
T PF03195_consen   81 SQLQQQLQQLQAELALVRAQL  101 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHccC
Confidence            999999999999999999886

The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].

>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.46  E-value=5.6  Score=34.92  Aligned_cols=68  Identities=16%  Similarity=0.215  Sum_probs=58.0

Q ss_pred             hHHHHhhcCCCccchhHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 036565           60 NVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPA  127 (180)
Q Consensus        60 nv~k~L~~lp~~~R~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eLa~~~~~La~~~~~~  127 (180)
                      |+..-|+......|+..+..||-||-++.-|--|=-+-.|..+++-|+.++.+|+.++.+|+....-.
T Consensus        11 ~lf~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~~~   78 (233)
T COG3416          11 NLFHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQAGE   78 (233)
T ss_pred             HHHHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            33444566677799999999999999999999999999999999999999999999999998776643

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	180
2er8_A	72	Regulatory protein Leu3; Zn(2)Cys(6) binuclear clu	81.82

>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A

Probab=81.82  E-value=2.9  Score=27.59  Aligned_cols=18  Identities=28%  Similarity=0.643  Sum_probs=13.2

Q ss_pred             CCCCcHHhHHhhhcCCCC
Q 036565           17 SSSSCAACKLLKRKCIPT   34 (180)
Q Consensus        17 ~~~~CAACK~lRRkC~~~   34 (180)
                      ...+|..|+..+-||...
T Consensus         2 ~~~AC~~Cr~rK~kCd~~   19 (72)
T 2er8_A            2 RKFACVECRQQKSKCDAH   19 (72)
T ss_dssp             CCCCCHHHHHTTCCCCSG
T ss_pred             cCchhHHHHhcccCCCCC
Confidence            356788888888888653

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00