Citrus Sinensis ID: 036568

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
VVVVVDIFDAEAKAVVRDAAGIKRVELLVSKENSTAFNINRKLLRYSAAAADGNRIGTACSKDDIVIYQGSTAPLPNGIPACTVQILNTCTCVSESESGGCSICNIHVNCGWFSSARLVNPQVFRRIHYDDCLVNDGEALPPGQALSFQYANTFQYPLSVSSVVCCSA
Secondary Structure (PSIPRED)
cEEEEEEccccHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHHcccccccccccccccEEEEEcccccccccccEEEEEEEccccccccccccccccccEEEEcccccccEEEccccEEEEccccEEEccccccccccEEEEEEEcccccccEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cEEEEEcccccHHHHHHHHcccccccccccccccccHHHHHHHHccccccccccccccccccccEEEEEcccccccccccEEEEEEEEEccccccccccccccccEEEEcccccccEEccHHHHHEcccccEEEccccccccccEEEEEEcccccccccccEEEEccc
Coil and Loop (DISEMBL)
VVVVVDIFDAEAKAVVRDAAGIKRVELLVSKENSTAFNINRKLLRYSAAaadgnrigtacskddiviyqgstaplpngipactVQILNTCtcvsesesggcsicnihvncgwfssarlvnpqvfrrihyddclvndgealppgqalsfqyantfqyplsvssvvccsa
Flexible Loop (DISEMBL)
VVVVVdifdaeakavvrdaagikrvellvskenstafninrKLLRYSAAAADGNRIGTACSKDDIVIYQGSTAPLPNGIPACTVQILNTCTCVSESESGGCSICNIHVNCGWFSSARLVNPQVFRRIHYDDCLVNDGEALPPGQALSFQYANTFQYPLSVSSVVCCSA
Low Complexity Region (SEG)
VVVVVDIFDAEAKAVVRDAAGIKRVELLVSKENSTAFNINRKLLRYSAAAADGNRIGTACSKDDIVIYQGSTAPLPNGIPACTVQILNTCTCVSESESGGCSICNIHVNCGWFSSARLVNPQVFRRIHYDDCLVNDGEALPPGQALSFQYANTFQYPLSVSSVVCCSA
Disordered region (IsUnstruct)
*VVVVDIFDAEAKAVVRDAAGIKRVELLVSKENSTAFNINRKLLRYSAAAADGNRIGTACSKDDIVIYQGSTAPLPNGIPACTVQILNTCTCVSESESGGCSICNIHVNCGWFSSARLVNPQVFRRIHYDDCLVNDGEALPPGQALSFQYANTFQYPLSVSSVVCC**
Disordered Region (DISOPRED)
VVVVVD*FDA*****************************NRKLLRYSAAA*D*******CSK*DIVIYQG*****PNGIPACTVQILNTCTCVSESESGGCSICNIHVNCGWFSSARLVNPQVFRRIHYDDCLVNDGEALPPGQALSFQYANTFQYPLSVSSVVCCS*
Disordered Region (DISEMBL)
VVVVVDIFDAEAKAVVRDAAGIKRVELLVSKENSTAFNINRKLLRYSAAAADGNRIGTACSKDDIVIYQGSTAPLPNGIPACTVQILNTCTCVSESESGGCSICNIHVNCGWFSSARLVNPQVFRRIHYDDCLVNDGEALPPGQALSFQYANTFQYPLSVSSVVCCSA
Disordered Region (DISPRO)
VVVVVDIFDAEAKAVVRDAAGIKR***********AFNINRKLL**S************CSKDDIVIYQGSTAPLPNGIPACTVQILNTCTCVSESESGGCSICNIHVNCGWFSSARLVNPQVFRRIHYDDCLVNDGEALPPGQALSFQYANTFQYPLSVSSVVCCSA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
VVVVVDIFDAEAKAVVRDAAGIKRVELLVSKENSTAFNINRKLLRYSAAAADGNRIGTACSKDDIVIYQGSTAPLPNGIPACTVQILNTCTCVSESESGGCSICNIHVNCGWFSSARLVNPQVFRRIHYDDCLVNDGEALPPGQALSFQYANTFQYPLSVSSVVCCSA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	168	2.2.26 [Sep-21-2011]
A8MS78	127	Uncharacterized protein A	no	no	0.410	0.543	0.373	4e-05

>sp|A8MS78|Y1583_ARATH Uncharacterized protein At1g05835 OS=Arabidopsis thaliana GN=At1g05835 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 14/83 (16%)

Query: 84  VQILNTCTCVSESESGGCSICNIHVNCGWFSSARLVNPQVFRRIHYD--DCLVNDGEALP 141
           V+++N C          C I N+ + C  F  + LV+P   R +     +C+VNDG  L 
Sbjct: 50  VEVMNKCPM--------CPIINLRLKCQGFPQS-LVDPTFLRVLSSSAGNCVVNDGLPLS 100

Query: 142 PGQALSFQYANTFQY---PLSVS 161
           P Q LSF Y+NT Q+   PLS S
Sbjct: 101 PMQTLSFNYSNTHQFALRPLSWS 123

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
359495636	189	PREDICTED: uncharacterized protein LOC10	0.797	0.708	0.634	7e-44
297736709	249	unnamed protein product [Vitis vinifera]	0.797	0.538	0.634	1e-43
79319075	179	uncharacterized protein [Arabidopsis tha	0.827	0.776	0.58	4e-40
147787391	358	hypothetical protein VITISV_023243 [Viti	0.738	0.346	0.622	2e-39
297846234	164	hypothetical protein ARALYDRAFT_473449 [	0.75	0.768	0.622	5e-39
255590931	180	conserved hypothetical protein [Ricinus	0.779	0.727	0.582	3e-38
449434404	164	PREDICTED: uncharacterized protein LOC10	0.636	0.652	0.666	4e-38
224089763	100	hypothetical protein POPTRDRAFT_417902 [	0.595	1.0	0.738	9e-38
224119750	178	predicted protein [Populus trichocarpa]	0.845	0.797	0.503	3e-36
225456402	168	PREDICTED: uncharacterized protein LOC10	0.696	0.696	0.614	2e-35

>gi|359495636|ref|XP_003635042.1| PREDICTED: uncharacterized protein LOC100852626 [Vitis vinifera]

 Score =  181 bits (460), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 92/145 (63%), Positives = 107/145 (73%), Gaps = 11/145 (7%)

Query: 21  GIKRVELLVSKENSTAFNINRKLLRYSAAAADGNRIGTACSKDDIVIYQGSTAPLPNGIP 80
           GIK+  L +SKENST F   RKLL         NRIG  CSKD+IVI+QG T PLP+GIP
Sbjct: 55  GIKK--LFLSKENSTGFV--RKLLASPDEGGAMNRIGGTCSKDNIVIFQGPTTPLPSGIP 110

Query: 81  ACTVQILNTCTCVSESESGGCSICNIHVNCGWFSSARLVNPQVFRRIHYDDCLVNDGEAL 140
             TVQILN C         GCSI NIHV CGWFSSARL+NP++FRRI +DDCLVN+G+AL
Sbjct: 111 TYTVQILNVCV-------AGCSISNIHVRCGWFSSARLINPRLFRRIFFDDCLVNNGDAL 163

Query: 141 PPGQALSFQYANTFQYPLSVSSVVC 165
            PG++LSFQYAN+F+YPLSV SV C
Sbjct: 164 GPGESLSFQYANSFRYPLSVLSVSC 188

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736709|emb|CBI25745.3| unnamed protein product [Vitis vinifera]

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 92/145 (63%), Positives = 107/145 (73%), Gaps = 11/145 (7%)

Query: 21  GIKRVELLVSKENSTAFNINRKLLRYSAAAADGNRIGTACSKDDIVIYQGSTAPLPNGIP 80
           GIK+  L +SKENST F   RKLL         NRIG  CSKD+IVI+QG T PLP+GIP
Sbjct: 115 GIKK--LFLSKENSTGFV--RKLLASPDEGGAMNRIGGTCSKDNIVIFQGPTTPLPSGIP 170

Query: 81  ACTVQILNTCTCVSESESGGCSICNIHVNCGWFSSARLVNPQVFRRIHYDDCLVNDGEAL 140
             TVQILN C         GCSI NIHV CGWFSSARL+NP++FRRI +DDCLVN+G+AL
Sbjct: 171 TYTVQILNVCV-------AGCSISNIHVRCGWFSSARLINPRLFRRIFFDDCLVNNGDAL 223

Query: 141 PPGQALSFQYANTFQYPLSVSSVVC 165
            PG++LSFQYAN+F+YPLSV SV C
Sbjct: 224 GPGESLSFQYANSFRYPLSVLSVSC 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79319075|ref|NP_001031128.1| uncharacterized protein [Arabidopsis thaliana] gi|98961753|gb|ABF59206.1| unknown protein [Arabidopsis thaliana] gi|332193386|gb|AEE31507.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  169 bits (428), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 87/150 (58%), Positives = 107/150 (71%), Gaps = 11/150 (7%)

Query: 17  RDAAGIKRVELLVSKENSTAFNINRKLLRYSAAAADG-NRIGTACSKDDIVIYQGSTAPL 75
           R +  +K    +   EN TA  ++RKLL  S    DG NRIG  CSKDDIV++QGST PL
Sbjct: 39  RRSIALKARSFVSINENRTA--LSRKLL-LSPDIGDGTNRIGQDCSKDDIVLFQGSTNPL 95

Query: 76  PNGIPACTVQILNTCTCVSESESGGCSICNIHVNCGWFSSARLVNPQVFRRIHYDDCLVN 135
           P+G+P+ TV+I N+C          C+I  IHV+CGWFSS RLVNP+VFRR+ YDDCLVN
Sbjct: 96  PSGVPSYTVEIFNSCV-------SDCNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVN 148

Query: 136 DGEALPPGQALSFQYANTFQYPLSVSSVVC 165
           DG+ L PGQ+LSFQYAN+F YPLSV+SV C
Sbjct: 149 DGQPLGPGQSLSFQYANSFSYPLSVASVSC 178

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147787391|emb|CAN73305.1| hypothetical protein VITISV_023243 [Vitis vinifera]

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 84/135 (62%), Positives = 99/135 (73%), Gaps = 11/135 (8%)

Query: 21  GIKRVELLVSKENSTAFNINRKLLRYSAAAADGNRIGTACSKDDIVIYQGSTAPLPNGIP 80
           GIK+  L +SKENST F   RKLL         NRIG  CSKD+IVI+QG T PLP+GIP
Sbjct: 159 GIKK--LFLSKENSTGFV--RKLLASPDEGGAMNRIGGTCSKDNIVIFQGPTTPLPSGIP 214

Query: 81  ACTVQILNTCTCVSESESGGCSICNIHVNCGWFSSARLVNPQVFRRIHYDDCLVNDGEAL 140
             TVQILN C         GCSI NIHV CGWFSSARL+NP++FRRI +DDCLVN+G+AL
Sbjct: 215 TYTVQILNVCV-------AGCSISNIHVRCGWFSSARLINPRLFRRIFFDDCLVNNGDAL 267

Query: 141 PPGQALSFQYANTFQ 155
            PG++LSFQYAN+F+
Sbjct: 268 GPGESLSFQYANSFR 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846234|ref|XP_002890998.1| hypothetical protein ARALYDRAFT_473449 [Arabidopsis lyrata subsp. lyrata] gi|297336840|gb|EFH67257.1| hypothetical protein ARALYDRAFT_473449 [Arabidopsis lyrata subsp. lyrata]

 Score =  165 bits (418), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 84/135 (62%), Positives = 100/135 (74%), Gaps = 9/135 (6%)

Query: 31  KENSTAFNINRKLLRYSAAAADGNRIGTACSKDDIVIYQGSTAPLPNGIPACTVQILNTC 90
            EN TA  + RKLL         NRIG  CSKDDIV++QGST PLP+G+P+ TV+I N+C
Sbjct: 38  NENRTA--LPRKLLLSPDIGDGTNRIGQDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNSC 95

Query: 91  TCVSESESGGCSICNIHVNCGWFSSARLVNPQVFRRIHYDDCLVNDGEALPPGQALSFQY 150
             VS+     C+I  IHV+CGWFSS RLVNP+VFRR+ YDDCLVNDG+ L PGQ LSFQY
Sbjct: 96  --VSD-----CNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQTLSFQY 148

Query: 151 ANTFQYPLSVSSVVC 165
           AN+F YPLSV+SV C
Sbjct: 149 ANSFSYPLSVASVSC 163

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255590931|ref|XP_002535401.1| conserved hypothetical protein [Ricinus communis] gi|223523236|gb|EEF26982.1| conserved hypothetical protein [Ricinus communis]

 Score =  163 bits (412), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 85/146 (58%), Positives = 109/146 (74%), Gaps = 15/146 (10%)

Query: 4   VVDIFDAEAKAVVRDAAGIKRVELLVSKE-NSTAFNINRKLLRYSAAAADGNRIGTACSK 62
           V D+F AEA A+    +GI+   +++SK+  +TA   +RKLL+Y+    DGNRIGT+CSK
Sbjct: 49  VADLFQAEATAI--SESGIQ--SIVISKDIRNTASCRSRKLLQYNDNG-DGNRIGTSCSK 103

Query: 63  DDIVIYQGSTAPLPNGIPACTVQILNTCTCVSESESGGCSICNIHVNCGWFSSARLVNPQ 122
           DDIVIYQGS  PLP+G+P+ TVQ+LN C C         SI NIHV+CGWFSS RL+NP+
Sbjct: 104 DDIVIYQGSITPLPDGVPSYTVQVLNICDC---------SISNIHVSCGWFSSVRLINPR 154

Query: 123 VFRRIHYDDCLVNDGEALPPGQALSF 148
           +FRRI +DDCLVNDGEAL PG+A+SF
Sbjct: 155 IFRRIFFDDCLVNDGEALGPGEAISF 180

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434404|ref|XP_004134986.1| PREDICTED: uncharacterized protein LOC101212765 [Cucumis sativus] gi|449527967|ref|XP_004170979.1| PREDICTED: uncharacterized protein LOC101225882 [Cucumis sativus]

 Score =  162 bits (410), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 76/114 (66%), Positives = 87/114 (76%), Gaps = 7/114 (6%)

Query: 54  NRIGTACSKDDIVIYQGSTAPLPNGIPACTVQILNTCTCVSESESGGCSICNIHVNCGWF 113
           NRIG+ C+KDDI+I+QG   PLP GIP   VQILN+C       +  CSI NIHV CGWF
Sbjct: 58  NRIGSRCAKDDIIIFQGPATPLPGGIPTYIVQILNSC-------ASDCSISNIHVKCGWF 110

Query: 114 SSARLVNPQVFRRIHYDDCLVNDGEALPPGQALSFQYANTFQYPLSVSSVVCCS 167
           SSARLVNP++F+R+ YDDCLVNDG AL PG+ LSFQYANTF YPLSVSS  C S
Sbjct: 111 SSARLVNPRIFKRVSYDDCLVNDGRALGPGRTLSFQYANTFPYPLSVSSATCSS 164

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089763|ref|XP_002308809.1| hypothetical protein POPTRDRAFT_417902 [Populus trichocarpa] gi|222854785|gb|EEE92332.1| hypothetical protein POPTRDRAFT_417902 [Populus trichocarpa]

 Score =  161 bits (407), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 79/107 (73%), Positives = 86/107 (80%), Gaps = 7/107 (6%)

Query: 59  ACSKDDIVIYQGSTAPLPNGIPACTVQILNTCTCVSESESGGCSICNIHVNCGWFSSARL 118
           ACSKD I I QGSTAPLPNGIP+ TVQILN C         GCSI NIHV+CGWFSSA+L
Sbjct: 1   ACSKDGIDIVQGSTAPLPNGIPSYTVQILNVCV-------SGCSISNIHVSCGWFSSAKL 53

Query: 119 VNPQVFRRIHYDDCLVNDGEALPPGQALSFQYANTFQYPLSVSSVVC 165
           +NP VFRRI+YDDCLVNDGE L PG+ LSFQYAN+F YPLSVSSV C
Sbjct: 54  INPSVFRRIYYDDCLVNDGEPLGPGETLSFQYANSFLYPLSVSSVAC 100

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119750|ref|XP_002318153.1| predicted protein [Populus trichocarpa] gi|222858826|gb|EEE96373.1| predicted protein [Populus trichocarpa]

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 76/151 (50%), Positives = 99/151 (65%), Gaps = 9/151 (5%)

Query: 17  RDAAGIKRVELLVSKE--NSTAFNINRKLLRYSAAAADGNRIGTACSKDDIVIYQGSTAP 74
           +D  G   +  +   E  N +   ++RKLL  S A  + NRIG  C+  DIVI QG TAP
Sbjct: 34  KDEGGFMGLSHMFLHEEGNYSVSALHRKLLVRSLAMEEPNRIGEKCTSADIVISQGPTAP 93

Query: 75  LPNGIPACTVQILNTCTCVSESESGGCSICNIHVNCGWFSSARLVNPQVFRRIHYDDCLV 134
           L +GIP  TVQI+N C         GC I  +H+NCGWFSSARL++P++F+R+ Y+DCLV
Sbjct: 94  LSSGIPTYTVQIMNMCAT-------GCDISRVHLNCGWFSSARLIDPKIFKRLRYNDCLV 146

Query: 135 NDGEALPPGQALSFQYANTFQYPLSVSSVVC 165
           NDG+ L  G  L+F+YANTF YPLSVSS+ C
Sbjct: 147 NDGKPLVTGGILTFEYANTFSYPLSVSSISC 177

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456402|ref|XP_002280540.1| PREDICTED: uncharacterized protein LOC100261037 [Vitis vinifera]

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 78/127 (61%), Positives = 91/127 (71%), Gaps = 10/127 (7%)

Query: 40  NRKLLRYSAAAADGNRI-GTACSKDDIVIYQGSTAPLPNGIPACTVQILNTCTCVSESES 98
           +RKLL    A  + NRI G  CSK DIVI QG T+PLP+GIP  TV+I+N C        
Sbjct: 51  HRKLLH--RALVEPNRIWGEKCSKADIVINQGPTSPLPSGIPTYTVEIMNVCFT------ 102

Query: 99  GGCSICNIHVNCGWFSSARLVNPQVFRRIHYDDCLVNDGEALPPGQALSFQYANTFQYPL 158
            GC I  IH++CGWFSSARL+NP++F+R+ YDDCLVNDG  L  G  LSFQYANTF YPL
Sbjct: 103 -GCDISGIHLSCGWFSSARLINPRIFKRLRYDDCLVNDGRPLTNGGTLSFQYANTFPYPL 161

Query: 159 SVSSVVC 165
           SVSSVVC
Sbjct: 162 SVSSVVC 168

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
TAIR|locus:1009023131	179	AT1G32583 "AT1G32583" [Arabido	0.827	0.776	0.593	1.6e-40
TAIR|locus:1006230300	176	TPD1 "AT4G24972" [Arabidopsis	0.851	0.812	0.481	7.7e-32
TAIR|locus:2116702	124	AT4G32090 [Arabidopsis thalian	0.380	0.516	0.310	0.00059

TAIR|locus:1009023131 AT1G32583 "AT1G32583" [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 89/150 (59%), Positives = 110/150 (73%)

Query:    17 RDAAGIKRVELLVSKENSTAFNINRKLLRYSAAAADG-NRIGTACSKDDIVIYQGSTAPL 75
             R +  +K    +   EN TA  ++RKLL  S    DG NRIG  CSKDDIV++QGST PL
Sbjct:    39 RRSIALKARSFVSINENRTA--LSRKLL-LSPDIGDGTNRIGQDCSKDDIVLFQGSTNPL 95

Query:    76 PNGIPACTVQILNTCTCVSESESGGCSICNIHVNCGWFSSARLVNPQVFRRIHYDDCLVN 135
             P+G+P+ TV+I N+C  VS+     C+I  IHV+CGWFSS RLVNP+VFRR+ YDDCLVN
Sbjct:    96 PSGVPSYTVEIFNSC--VSD-----CNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVN 148

Query:   136 DGEALPPGQALSFQYANTFQYPLSVSSVVC 165
             DG+ L PGQ+LSFQYAN+F YPLSV+SV C
Sbjct:   149 DGQPLGPGQSLSFQYANSFSYPLSVASVSC 178

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009408 "response to heat" evidence=IEP

TAIR|locus:1006230300 TPD1 "AT4G24972" [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 76/158 (48%), Positives = 98/158 (62%)

Query:    16 VRDAAGIK-RVELLVSKENSTAFNIN-RKLLRYSAA------AADGNRIGTACSKDDIVI 67
             V  + G K R  L ++K  +++ +I+ RK+L  S        + +  RIG  C   DIV+
Sbjct:    25 VEASGGEKLRDNLDLTKTTTSSPSISHRKMLLLSPGTGKTERSVEPERIGEKCKSTDIVV 84

Query:    68 YQGSTAPLPNGIPACTVQILNTCTCVSESESGGCSICNIHVNCGWFSSARLVNPQVFRRI 127
              Q  T P+PNGIP   V+I N C         GC I  IH+NCGWFSSA+L+NP+VF+RI
Sbjct:    85 NQAVTEPMPNGIPGYMVEITNQCM-------SGCIISRIHINCGWFSSAKLINPRVFKRI 137

Query:   128 HYDDCLVNDGEALPPGQALSFQYANTFQYPLSVSSVVC 165
             HYDDCLVN+G+ LP G  LSF YANTF Y LSV+ V C
Sbjct:   138 HYDDCLVNNGKPLPFGSTLSFHYANTFPYHLSVAFVTC 175

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0001709 "cell fate determination" evidence=IMP

GO:0048653 "anther development" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2116702 AT4G32090 [Arabidopsis thaliana (taxid:3702)]

 Score = 90 (36.7 bits), Expect = 0.00059, P = 0.00059
 Identities = 23/74 (31%), Positives = 36/74 (48%)

Query:    78 GIPACTVQILNTCTCVSESESGGCSICNIHVNCGWFSSARLVNPQVFRRIHYDDCLVNDG 137
             G P   V ++NTC C  +         ++ ++CG F+ A+ V P + +    + CL+  G
Sbjct:    42 GQPEWKVTVINTCNCFQK---------HVTLSCGGFAPAKPVKPLLLQP-QGNTCLMIKG 91

Query:   138 EALPPGQALSFQYA 151
              ALP G    F YA
Sbjct:    92 AALPAGATAQFTYA 105


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.134   0.409    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      168       168   0.00079  108 3  11 22  0.36    32
                                                     31  0.46    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  583 (62 KB)
  Total size of DFA:  149 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.20u 0.12s 14.32t   Elapsed:  00:00:01
  Total cpu time:  14.20u 0.12s 14.32t   Elapsed:  00:00:01
  Start:  Thu May  9 19:11:25 2013   End:  Thu May  9 19:11:26 2013

GO:0005576 "extracellular region" evidence=ISM

GO:0006486 "protein glycosylation" evidence=IEA

GO:0008378 "galactosyltransferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00004701001 SubName- Full=Chromosome undetermined scaffold_783, whole genome shotgun sequence; Flags- Fragment; (146 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
PF09478	80	CBM49: Carbohydrate binding domain CBM49; InterPro	96.31
PLN02171	629	endoglucanase	82.8

>PF09478 CBM49: Carbohydrate binding domain CBM49; InterPro: IPR019028 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity

Probab=96.31  E-value=0.014  Score=41.46  Aligned_cols=74  Identities=19%  Similarity=0.260  Sum_probs=54.2

Q ss_pred             eeEEecccCCCCC-Ccc--cEEEEEecccccCCCCCCCCcccccEEEEcCCcc-cceeeCCcceeeecCCceEe-cCCcc
Q 036568           65 IVIYQGSTAPLPN-GIP--ACTVQILNTCTCVSESESGGCSICNIHVNCGWFS-SARLVNPQVFRRIHYDDCLV-NDGEA  139 (168)
Q Consensus        65 I~V~Q~~TG~~v~-G~P--ey~VtI~N~C~~~~~~~~~~C~~snV~L~CggF~-Sa~~VDP~vfrrl~~ddCLV-NdG~p  139 (168)
                      |+|.|..+..+.. |.+  +|.|+|+|.+.         =+++++++....+. +.=    .+-+ ..++..-+ ..-.+
T Consensus         1 i~i~q~~~~sW~~~g~~y~qy~v~I~N~~~---------~~I~~~~i~~~~l~~~iW----~l~~-~~~~~y~lPs~~~~   66 (80)
T PF09478_consen    1 ITITQTLVNSWTENGQTYTQYDVTITNNGS---------KPIKSLKISIDNLYGSIW----GLDK-VSGNTYTLPSYQPT   66 (80)
T ss_pred             CEEEEEEEeEEEeCCEEEEEEEEEEEECCC---------CeEEEEEEEECccchhhe----eEEe-ccCCEEECCccccc
Confidence            6788988877554 543  79999999997         68999999998774 221    1222 45566666 33349


Q ss_pred             CCCCCeeEEEEec
Q 036568          140 LPPGQALSFQYAN  152 (168)
Q Consensus       140 I~~g~~VsF~YAw  152 (168)
                      |.+|++.+|-|-.
T Consensus        67 i~pg~s~~FGYI~   79 (80)
T PF09478_consen   67 IKPGQSFTFGYIS   79 (80)
T ss_pred             cCCCCEEEEEEEe
Confidence            9999999999953

A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This domain is found at the C-terminal of cellulases and in vitro binding studies have shown it to binds to crystalline cellulose []. ; GO: 0030246 carbohydrate binding, 0005576 extracellular region

>PLN02171 endoglucanase

Probab=82.80  E-value=2.1  Score=41.62  Aligned_cols=77  Identities=17%  Similarity=0.221  Sum_probs=52.9

Q ss_pred             CCceeEEecccCCCCC---CcccEEEEEecccccCCCCCCCCcccccEEEEcCCc-ccceeeCCcceeeecCCceEecCC
Q 036568           62 KDDIVIYQGSTAPLPN---GIPACTVQILNTCTCVSESESGGCSICNIHVNCGWF-SSARLVNPQVFRRIHYDDCLVNDG  137 (168)
Q Consensus        62 ~sDI~V~Q~~TG~~v~---G~Pey~VtI~N~C~~~~~~~~~~C~~snV~L~CggF-~Sa~~VDP~vfrrl~~ddCLVNdG  137 (168)
                      .+.|+|.|..++.+..   +.-+|.|+|+|++.         .+++++++.=..+ -+.-    .+.+  .++...+=+-
T Consensus       534 ~~ei~i~q~v~~sW~~~g~~y~qy~v~I~N~s~---------~~ik~i~i~~~~~~~~iW----~v~~--~~ngytlPs~  598 (629)
T PLN02171        534 SSPIEIEQKATASWKAKGRTYYRYSTTVTNRSA---------KTLKELHLGISKLYGPLW----GLTK--AGYGYVLPSW  598 (629)
T ss_pred             cceeEEEEEEEEEEEcCCceEEEEEEEEEECCC---------Cceeeeeeeeccccccch----heee--cCCcccCchh
Confidence            3379999999987664   35589999999997         9999999975333 2221    1111  1223333333


Q ss_pred             c-cCCCCCeeEEEEecC
Q 036568          138 E-ALPPGQALSFQYANT  153 (168)
Q Consensus       138 ~-pI~~g~~VsF~YAws  153 (168)
                      . .|.+|+..+|-|-+.
T Consensus       599 ~~sL~aG~s~tFgyI~~  615 (629)
T PLN02171        599 MPSLPAGKSLEFVYVHS  615 (629)
T ss_pred             hcccCCCCeeEEEeecC
Confidence            2 788899999999965

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00