Citrus Sinensis ID: 036588
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 541 | 2.2.26 [Sep-21-2011] | |||||||
| C0LGQ5 | 1249 | LRR receptor-like serine/ | yes | no | 0.987 | 0.427 | 0.385 | 8e-71 | |
| Q9LHP4 | 1141 | Receptor-like protein kin | no | no | 0.905 | 0.429 | 0.361 | 1e-69 | |
| Q9FL28 | 1173 | LRR receptor-like serine/ | no | no | 0.990 | 0.456 | 0.344 | 5e-68 | |
| Q9LYN8 | 1192 | Leucine-rich repeat recep | no | no | 0.942 | 0.427 | 0.345 | 3e-67 | |
| Q9LVP0 | 1102 | Probable leucine-rich rep | no | no | 0.992 | 0.487 | 0.347 | 3e-67 | |
| C0LGV1 | 1135 | LRR receptor-like serine/ | no | no | 0.990 | 0.472 | 0.354 | 2e-66 | |
| C0LGP4 | 1010 | Probable LRR receptor-lik | no | no | 0.983 | 0.526 | 0.361 | 5e-66 | |
| Q9M2Z1 | 1002 | Leucine-rich repeat recep | no | no | 0.948 | 0.511 | 0.343 | 5e-66 | |
| O49545 | 1003 | Leucine-rich repeat recep | no | no | 0.985 | 0.531 | 0.346 | 3e-64 | |
| C0LGW6 | 966 | LRR receptor-like serine/ | no | no | 0.796 | 0.446 | 0.360 | 9e-64 |
| >sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1 | Back alignment and function desciption |
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Score = 268 bits (685), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 213/552 (38%), Positives = 293/552 (53%), Gaps = 18/552 (3%)
Query: 2 WNTSS-SVCNWTGITCD-VRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSG 59
WN+ + + C+WTG+TCD +RV ALN++GL LT +I G +L LDLS N G
Sbjct: 50 WNSDNINYCSWTGVTCDNTGLFRVIALNLTGLGLTGSISPWFGRFDNLIHLDLSSNNLVG 109
Query: 60 SIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKR 119
IP ++ N++SL S+ +N L GE+P L N+ SL + N G IP TL +
Sbjct: 110 PIPTALSNLTSLESLFLFSNQLTGEIPSQL-GSLVNIRSLRIGDNELVGDIPETLGNLVN 168
Query: 120 LRETSLS---LNDFFWDHTKR--NWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFS 174
L+ +L+ L R Q L L N G IP+++ NCS L + N +
Sbjct: 169 LQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLN 228
Query: 175 GAIPKEISNLTKLEKLDLQYNKLQGTIPYA-GHLYQLQWLDLSDNQLSGSLPSFKFKMPL 233
G IP E+ L LE L+L N L G IP G + QLQ+L L NQL G +P +
Sbjct: 229 GTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGN 288
Query: 234 LQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIP-SDTANCSYLRILVLRFNN 292
LQ LDLS+N L+ E+P F N+ L +L L+NN G +P S +N + L LVL
Sbjct: 289 LQTLDLSANNLTGEIPEE-FWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQ 347
Query: 293 FSGAIPKEISNLTKLEKLDLQYNRLQGTI-LYVGHLLQLQWLDLSDNQLSGSLPSFKFNM 351
SG IP E+S L++LDL N L G+I + L++L L L +N L G+L N+
Sbjct: 348 LSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNL 407
Query: 352 PLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFN 411
LQ+L L N L +LP + L LE L+L N F GEIP + NC+ L+++ + N
Sbjct: 408 TNLQWLVLYHNNLEGKLPKEI-SALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGN 466
Query: 412 NFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLP-SFKF 469
+F G IP I L +L L L+ N L G +P + G+ QL LDL+DNQLSGS+P SF F
Sbjct: 467 HFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGF 526
Query: 470 KMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQ 529
L Q + L +N L LP ++ +L L + LS+N G I + SYL V
Sbjct: 527 LKGLEQLM-LYNNSLQGNLPDSLI-SLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTN 584
Query: 530 FNNFSGAIPKEI 541
N F IP E+
Sbjct: 585 -NGFEDEIPLEL 595
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Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1 | Back alignment and function description |
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Score = 265 bits (676), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 216/598 (36%), Positives = 289/598 (48%), Gaps = 108/598 (18%)
Query: 1 NWNT-SSSVCN-WTGITCDVRTY-----------------------RVTALNISGLNLTV 35
NWN+ ++ CN WT ITC + + + L ISG NLT
Sbjct: 60 NWNSIDNTPCNNWTFITCSSQGFITDIDIESVPLQLSLPKNLPAFRSLQKLTISGANLTG 119
Query: 36 TIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSN 95
T+P LG+ L+ LDLS N G IP S+ + +L ++ +N L G++PP+ + S
Sbjct: 120 TLPESLGDCLGLKVLDLSSNGLVGDIPWSLSKLRNLETLILNSNQLTGKIPPDI-SKCSK 178
Query: 96 LESLFLKSNM-------------------------FHGKIPSTLSSCKRL-----RETSL 125
L+SL L N+ G+IPS + C L ETS+
Sbjct: 179 LKSLILFDNLLTGSIPTELGKLSGLEVIRIGGNKEISGQIPSEIGDCSNLTVLGLAETSV 238
Query: 126 SLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLT 185
S N + + L + M GEIPSD+ NCS L L L N+ SG+IP+EI LT
Sbjct: 239 SGNLPSSLGKLKKLETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIPREIGQLT 298
Query: 186 KLEKLDLQYNKLQGTIPYA-GHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRL 244
KLE+L L N L G IP G+ L+ +DLS N LSGS+PS S RL
Sbjct: 299 KLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNLLSGSIPS-------------SIGRL 345
Query: 245 SAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNL 304
S FLEE +S+N F G IP+ +NCS L L L N SG IP E+ L
Sbjct: 346 S------------FLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSELGTL 393
Query: 305 TKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRL 364
TKL T+ + W NQL GS+P + LQ LDLS N L
Sbjct: 394 TKL------------TLFFA-------W----SNQLEGSIPPGLADCTDLQALDLSRNSL 430
Query: 365 SVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNL 424
+ +P+ +F L L +L L +N G IP + NCS L L L FN G IP I +L
Sbjct: 431 TGTIPSGLFM-LRNLTKLLLISNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSL 489
Query: 425 TKLEKLDLQYNRLQGTIP-YAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNR 483
K+ LD NRL G +P G +LQ +DLS+N L GSLP+ + LQ LD+S+N+
Sbjct: 490 KKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQ 549
Query: 484 LSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPKEI 541
S ++P + L L +L LS N+F G IP+ CS L++L + N SG IP E+
Sbjct: 550 FSGKIPAS-LGRLVSLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSEL 606
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1 | Back alignment and function description |
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Score = 259 bits (661), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 198/574 (34%), Positives = 277/574 (48%), Gaps = 38/574 (6%)
Query: 1 NWNTSSSV--CNWTGITCDVRTYRVTA-----------------------LNISGLNLTV 35
+W S+ CNWTGITCD + V+ L+++ + T
Sbjct: 51 DWTIIGSLRHCNWTGITCDSTGHVVSVSLLEKQLEGVLSPAIANLTYLQVLDLTSNSFTG 110
Query: 36 TIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSN 95
IP+E+G L+ L L L N+FSGSIP+ I+ + ++ ++ NN L G++P C S+
Sbjct: 111 KIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVPEEIC-KTSS 169
Query: 96 LESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWD-----HTKRNWQQLYLSKNMFY 150
L + N GKIP L L+ + N T N L LS N
Sbjct: 170 LVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLT 229
Query: 151 GEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA-GHLYQ 209
G+IP D N L+ LVL N G IP EI N + L +L+L N+L G IP G+L Q
Sbjct: 230 GKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQ 289
Query: 210 LQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMF 269
LQ L + N+L+ S+PS F++ L L LS N L + + L LE L L +N F
Sbjct: 290 LQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGF-LESLEVLTLHSNNF 348
Query: 270 YGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTI-LYVGHLL 328
GE P N L +L + FNN SG +P ++ LT L L N L G I + +
Sbjct: 349 TGEFPQSITNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCT 408
Query: 329 QLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNM 388
L+ LDLS NQ++G +P F L F+ + N + E+P ++F N LE L +++N
Sbjct: 409 GLKLLDLSHNQMTGEIPR-GFGRMNLTFISIGRNHFTGEIPDDIF-NCSNLETLSVADNN 466
Query: 389 FYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA-GHL 447
G + LRIL + +N+ G IP+EI NL L L L N G IP +L
Sbjct: 467 LTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNL 526
Query: 448 FQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
LQ L + N L G +P F M LL LDLS+N+ S ++P +F L L L L N
Sbjct: 527 TLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPA-LFSKLESLTYLSLQGN 585
Query: 508 MFYGEIPSDTPNCSYLRILVVQFNNFSGAIPKEI 541
F G IP+ + S L + N +G IP E+
Sbjct: 586 KFNGSIPASLKSLSLLNTFDISDNLLTGTIPGEL 619
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Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1 | Back alignment and function description |
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Score = 256 bits (655), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 213/617 (34%), Positives = 292/617 (47%), Gaps = 107/617 (17%)
Query: 9 CNWTGITC---------------------DVRTYR-VTALNISGLNLTVTIPSELGNLSS 46
C+W G+TC ++ + + + L ++G + IP E+ NL
Sbjct: 55 CDWVGVTCLLGRVNSLSLPSLSLRGQIPKEISSLKNLRELCLAGNQFSGKIPPEIWNLKH 114
Query: 47 LQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMF 106
LQTLDLS N +G +P + + LL ++ +N G LPP+F L L SL + +N
Sbjct: 115 LQTLDLSGNSLTGLLPRLLSELPQLLYLDLSDNHFSGSLPPSFFISLPALSSLDVSNNSL 174
Query: 107 HGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRIL 166
G+IP + N LY+ N F G+IPS+I N S L+
Sbjct: 175 SGEIPPEIGKLS-------------------NLSNLYMGLNSFSGQIPSEIGNISLLKNF 215
Query: 167 VLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA---------------------- 204
F+G +PKEIS L L KLDL YN L+ +IP +
Sbjct: 216 AAPSCFFNGPLPKEISKLKHLAKLDLSYNPLKCSIPKSFGELHNLSILNLVSAELIGLIP 275
Query: 205 ---GHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEE 261
G+ L+ L LS N LSG LP ++PLL F N+LS LP+ L+
Sbjct: 276 PELGNCKSLKSLMLSFNSLSGPLPLELSEIPLLTF-SAERNQLSGSLPS-WMGKWKVLDS 333
Query: 262 LYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTI 321
L L+NN F GEIP + +C L+ L L N SG+IP+E+ LE +DL N L GTI
Sbjct: 334 LLLANNRFSGEIPHEIEDCPMLKHLSLASNLLSGSIPRELCGSGSLEAIDLSGNLLSGTI 393
Query: 322 LYV-GHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFH------ 374
V L L L++NQ++GS+P + +PL+ LDL SN + E+P +++
Sbjct: 394 EEVFDGCSSLGELLLTNNQINGSIPEDLWKLPLMA-LDLDSNNFTGEIPKSLWKSTNLME 452
Query: 375 -----------------NLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAI 417
N L+ L LS+N GEIP + + L +L L N F G I
Sbjct: 453 FTASYNRLEGYLPAEIGNAASLKRLVLSDNQLTGEIPREIGKLTSLSVLNLNANMFQGKI 512
Query: 418 PKEISNLTKLEKLDLQYNRLQGTIP-YAGHLFQLQWLDLSDNQLSGSLPS------FKFK 470
P E+ + T L LDL N LQG IP L QLQ L LS N LSGS+PS + +
Sbjct: 513 PVELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIE 572
Query: 471 MPLLQFL------DLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLR 524
MP L FL DLS NRLS +P + L L E+ LSNN GEIP+ + L
Sbjct: 573 MPDLSFLQHHGIFDLSYNRLSGPIPEELGECL-VLVEISLSNNHLSGEIPASLSRLTNLT 631
Query: 525 ILVVQFNNFSGAIPKEI 541
IL + N +G+IPKE+
Sbjct: 632 ILDLSGNALTGSIPKEM 648
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Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (654), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 200/576 (34%), Positives = 283/576 (49%), Gaps = 39/576 (6%)
Query: 1 NWNTSSSV-CNWTGITCDVRTY--RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWF 57
NWN++ SV C WTG+ C + V +LN+S + L+ + +G L L+ LDLS+N
Sbjct: 50 NWNSNDSVPCGWTGVMCSNYSSDPEVLSLNLSSMVLSGKLSPSIGGLVHLKQLDLSYNGL 109
Query: 58 SGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSC 117
SG IP I N SSL + NN GE+P L +LE+L + +N G +P + +
Sbjct: 110 SGKIPKEIGNCSSLEILKLNNNQFDGEIPVEI-GKLVSLENLIIYNNRISGSLPVEIGNL 168
Query: 118 KRLRETSLSLNDFFWDHTK-----RNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNN 172
L + N+ + + +NM G +PS+I C L +L L N
Sbjct: 169 LSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIGGCESLVMLGLAQNQ 228
Query: 173 FSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA-GHLYQLQWLDLSDNQLSGSLPSFKFKM 231
SG +PKEI L KL ++ L N+ G IP + L+ L L NQL G +P +
Sbjct: 229 LSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQLVGPIPKELGDL 288
Query: 232 PLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFN 291
L+FL L N L+ +P + NL + E+ S N GEIP + N L +L L N
Sbjct: 289 QSLEFLYLYRNGLNGTIPREI-GNLSYAIEIDFSENALTGEIPLELGNIEGLELLYLFEN 347
Query: 292 NFSGAIPKEISNLTKLEKLDLQYNRLQGTI---------LYVGHLLQ----------LQW 332
+G IP E+S L L KLDL N L G I L++ L Q L W
Sbjct: 348 QLTGTIPVELSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPKLGW 407
Query: 333 ------LDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSN 386
LD+SDN LSG +PS+ + L+L +N LS +PT + L +L L+
Sbjct: 408 YSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPTGI-TTCKTLVQLRLAR 466
Query: 387 NMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA-G 445
N G PS+ + + L N F G+IP+E+ N + L++L L N G +P G
Sbjct: 467 NNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPREIG 526
Query: 446 HLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLS 505
L QL L++S N+L+G +PS F +LQ LD+ N S LP+ V +L LE L LS
Sbjct: 527 MLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTLPSEV-GSLYQLELLKLS 585
Query: 506 NNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPKEI 541
NN G IP N S L L + N F+G+IP+E+
Sbjct: 586 NNNLSGTIPVALGNLSRLTELQMGGNLFNGSIPREL 621
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 253 bits (647), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 196/553 (35%), Positives = 286/553 (51%), Gaps = 17/553 (3%)
Query: 1 NWNTSSS-VCNWTGITCDVRTYR-VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFS 58
WN S S C W ITC + VT +N+ + L + P + + +SLQ L +S +
Sbjct: 60 GWNPSDSDPCQWPYITCSSSDNKLVTEINVVSVQLALPFPPNISSFTSLQKLVISNTNLT 119
Query: 59 GSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCK 118
G+I + I + S L+ I+ +N+L GE+P + L NL+ L L SN GKIP L C
Sbjct: 120 GAISSEIGDCSELIVIDLSSNSLVGEIPSSL-GKLKNLQELCLNSNGLTGKIPPELGDCV 178
Query: 119 RLRETSLSLNDFFWDHTKRNWQQLYLSKNM-------FYGEIPSDIANCSYLRILVLQFN 171
L+ + +++ ++ ++ +++ G+IP +I NC L++L L
Sbjct: 179 SLKNLEI-FDNYLSENLPLELGKISTLESIRAGGNSELSGKIPEEIGNCRNLKVLGLAAT 237
Query: 172 NFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA-GHLYQLQWLDLSDNQLSGSLPSFKFK 230
SG++P + L+KL+ L + L G IP G+ +L L L DN LSG+LP K
Sbjct: 238 KISGSLPVSLGQLSKLQSLSVYSTMLSGEIPKELGNCSELINLFLYDNDLSGTLPKELGK 297
Query: 231 MPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRF 290
+ L+ + L N L +P + + L + LS N F G IP N S L+ L+L
Sbjct: 298 LQNLEKMLLWQNNLHGPIPEEIGF-MKSLNAIDLSMNYFSGTIPKSFGNLSNLQELMLSS 356
Query: 291 NNFSGAIPKEISNLTKLEKLDLQYNRLQGTIL-YVGHLLQLQWLDLSDNQLSGSLPSFKF 349
NN +G+IP +SN TKL + + N++ G I +G L +L N+L G++P
Sbjct: 357 NNITGSIPSILSNCTKLVQFQIDANQISGLIPPEIGLLKELNIFLGWQNKLEGNIPDELA 416
Query: 350 NMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLK 409
LQ LDLS N L+ LP +F L L +L L +N G IP + NC+ L L L
Sbjct: 417 GCQNLQALDLSQNYLTGSLPAGLFQ-LRNLTKLLLISNAISGVIPLEIGNCTSLVRLRLV 475
Query: 410 FNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPSFK 468
N G IPK I L L LDL N L G +P + QLQ L+LS+N L G LP
Sbjct: 476 NNRITGEIPKGIGFLQNLSFLDLSENNLSGPVPLEISNCRQLQMLNLSNNTLQGYLPLSL 535
Query: 469 FKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVV 528
+ LQ LD+SSN L+ ++P ++ H L L L LS N F GEIPS +C+ L++L +
Sbjct: 536 SSLTKLQVLDVSSNDLTGKIPDSLGH-LISLNRLILSKNSFNGEIPSSLGHCTNLQLLDL 594
Query: 529 QFNNFSGAIPKEI 541
NN SG IP+E+
Sbjct: 595 SSNNISGTIPEEL 607
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 252 bits (643), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 200/554 (36%), Positives = 280/554 (50%), Gaps = 22/554 (3%)
Query: 1 NWNTSSSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGS 60
+WN S +CNW G+TC + RVT L + L L I +GNLS L +LDL N+F G+
Sbjct: 46 SWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGGVISPSIGNLSFLVSLDLYENFFGGT 105
Query: 61 IPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRL 120
IP + +S L ++ N L G +P N S L +L L SN G +PS L S L
Sbjct: 106 IPQEVGQLSRLEYLDMGINYLRGPIPLGLYN-CSRLLNLRLDSNRLGGSVPSELGSLTNL 164
Query: 121 RETSLSLNDFFWD-----HTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSG 175
+ +L N+ +QL LS N GEIPSD+A + + L L NNFSG
Sbjct: 165 VQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGEIPSDVAQLTQIWSLQLVANNFSG 224
Query: 176 AIPKEISNLTKLEKLDLQYNKLQGTI-PYAGHLY-QLQWLDLSDNQLSGSLPSFKFKMPL 233
P + NL+ L+ L + YN G + P G L L ++ N +GS+P+ +
Sbjct: 225 VFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPNLLSFNMGGNYFTGSIPTTLSNIST 284
Query: 234 LQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSD------TANCSYLRILV 287
L+ L ++ N L+ +PT F N+P L+ L+L N + D NC+ L L
Sbjct: 285 LERLGMNENNLTGSIPT--FGNVPNLKLLFLHTNSLGSDSSRDLEFLTSLTNCTQLETLG 342
Query: 288 LRFNNFSGAIPKEISNLT-KLEKLDLQYNRLQGTILY-VGHLLQLQWLDLSDNQLSGSLP 345
+ N G +P I+NL+ KL LDL + G+I Y +G+L+ LQ L L N LSG LP
Sbjct: 343 IGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPYDIGNLINLQKLILDQNMLSGPLP 402
Query: 346 SFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRI 405
+ + L++L L SNRLS +P N+ LE L LSNN F G +P+ NCS+L
Sbjct: 403 TSLGKLLNLRYLSLFSNRLSGGIPA-FIGNMTMLETLDLSNNGFEGIVPTSLGNCSHLLE 461
Query: 406 LVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSL 464
L + N G IP EI + +L +LD+ N L G++P G L L L L DN+LSG L
Sbjct: 462 LWIGDNKLNGTIPLEIMKIQQLLRLDMSGNSLIGSLPQDIGALQNLGTLSLGDNKLSGKL 521
Query: 465 PSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLR 524
P ++ L L N ++P L ++E+ LSNN G IP + S L
Sbjct: 522 PQTLGNCLTMESLFLEGNLFYGDIPD--LKGLVGVKEVDLSNNDLSGSIPEYFASFSKLE 579
Query: 525 ILVVQFNNFSGAIP 538
L + FNN G +P
Sbjct: 580 YLNLSFNNLEGKVP 593
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 252 bits (643), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 188/548 (34%), Positives = 279/548 (50%), Gaps = 35/548 (6%)
Query: 1 NWNTSSSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGS 60
+WN S++ C+WTG+TCDV VT+L++SGLNL+ T+ S++ +L LQ L L+ N SG
Sbjct: 49 SWNLSTTFCSWTGVTCDVSLRHVTSLDLSGLNLSGTLSSDVAHLPLLQNLSLAANQISGP 108
Query: 61 IPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRL 120
IP I N+ L +N NN G P + L NL L L +N G +P +L++ +L
Sbjct: 109 IPPQISNLYELRHLNLSNNVFNGSFPDELSSGLVNLRVLDLYNNNLTGDLPVSLTNLTQL 168
Query: 121 RETSLSLNDFFWD--HTKRNW---QQLYLSKNMFYGEIPSDIANCSYLRILVLQ-FNNFS 174
R L N F T W + L +S N G+IP +I N + LR L + +N F
Sbjct: 169 RHLHLGGNYFSGKIPATYGTWPVLEYLAVSGNELTGKIPPEIGNLTTLRELYIGYYNAFE 228
Query: 175 GAIPKEISNLTKLEKLDLQYNKLQGTI-PYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPL 233
+P EI NL++L + D L G I P G L +L L L N +G++ +
Sbjct: 229 NGLPPEIGNLSELVRFDAANCGLTGEIPPEIGKLQKLDTLFLQVNAFTGTITQELGLISS 288
Query: 234 LQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNF 293
L+ +DLS+N + E+PT+ F L L L L N YG IP L +L L NNF
Sbjct: 289 LKSMDLSNNMFTGEIPTS-FSQLKNLTLLNLFRNKLYGAIPEFIGEMPELEVLQLWENNF 347
Query: 294 SGAIPKEISNLTKLEKLDLQYNRLQG-------------TILYVGHLL------------ 328
+G+IP+++ +L LDL N+L G T++ +G+ L
Sbjct: 348 TGSIPQKLGENGRLVILDLSSNKLTGTLPPNMCSGNRLMTLITLGNFLFGSIPDSLGKCE 407
Query: 329 QLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNM 388
L + + +N L+GS+P F +P L ++L N L+ ELP + L ++ LSNN
Sbjct: 408 SLTRIRMGENFLNGSIPKELFGLPKLSQVELQDNYLTGELPISGGGVSGDLGQISLSNNQ 467
Query: 389 FYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTI-PYAGHL 447
G +P+ N S ++ L+L N F G+IP EI L +L KLD +N G I P
Sbjct: 468 LSGSLPAAIGNLSGVQKLLLDGNKFSGSIPPEIGRLQQLSKLDFSHNLFSGRIAPEISRC 527
Query: 448 FQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
L ++DLS N+LSG +P+ M +L +L+LS N L +P + ++ L + S N
Sbjct: 528 KLLTFVDLSRNELSGDIPNELTGMKILNYLNLSRNHLVGSIPVTIA-SMQSLTSVDFSYN 586
Query: 508 MFYGEIPS 515
G +PS
Sbjct: 587 NLSGLVPS 594
|
Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O49545|BAME1_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 246 bits (628), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 190/549 (34%), Positives = 274/549 (49%), Gaps = 16/549 (2%)
Query: 1 NWNTSSSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGS 60
+W S+S C W G+TCDV VT+L++SGLNL+ T+ ++ +L LQ L L+ N SG
Sbjct: 49 SWKVSTSFCTWIGVTCDVSRRHVTSLDLSGLNLSGTLSPDVSHLRLLQNLSLAENLISGP 108
Query: 61 IPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRL 120
IP I ++S L +N NN G P + L NL L + +N G +P ++++ +L
Sbjct: 109 IPPEISSLSGLRHLNLSNNVFNGSFPDEISSGLVNLRVLDVYNNNLTGDLPVSVTNLTQL 168
Query: 121 RETSLSLNDFFWD--HTKRNW---QQLYLSKNMFYGEIPSDIANCSYLRILVLQF-NNFS 174
R L N F + +W + L +S N G+IP +I N + LR L + + N F
Sbjct: 169 RHLHLGGNYFAGKIPPSYGSWPVIEYLAVSGNELVGKIPPEIGNLTTLRELYIGYYNAFE 228
Query: 175 GAIPKEISNLTKLEKLDLQYNKLQGTIP-YAGHLYQLQWLDLSDNQLSGSLPSFKFKMPL 233
+P EI NL++L + D L G IP G L +L L L N SG L +
Sbjct: 229 DGLPPEIGNLSELVRFDGANCGLTGEIPPEIGKLQKLDTLFLQVNVFSGPLTWELGTLSS 288
Query: 234 LQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNF 293
L+ +DLS+N + E+P + F L L L L N +GEIP + L +L L NNF
Sbjct: 289 LKSMDLSNNMFTGEIPAS-FAELKNLTLLNLFRNKLHGEIPEFIGDLPELEVLQLWENNF 347
Query: 294 SGAIPKEISNLTKLEKLDLQYNRLQGTI---LYVGHLLQLQWLDLSDNQLSGSLPSFKFN 350
+G+IP+++ KL +DL N+L GT+ + G+ +L+ L N L GS+P
Sbjct: 348 TGSIPQKLGENGKLNLVDLSSNKLTGTLPPNMCSGN--KLETLITLGNFLFGSIPDSLGK 405
Query: 351 MPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKF 410
L + + N L+ +P +F LP L ++ L +N GE+P L + L
Sbjct: 406 CESLTRIRMGENFLNGSIPKGLF-GLPKLTQVELQDNYLSGELPVAGGVSVNLGQISLSN 464
Query: 411 NNFPGAIPKEISNLTKLEKLDLQYNRLQGTIP-YAGHLFQLQWLDLSDNQLSGSLPSFKF 469
N G +P I N T ++KL L N+ QG IP G L QL +D S N SG +
Sbjct: 465 NQLSGPLPPAIGNFTGVQKLLLDGNKFQGPIPSEVGKLQQLSKIDFSHNLFSGRIAPEIS 524
Query: 470 KMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQ 529
+ LL F+DLS N LS E+P N + L L LS N G IP + L L
Sbjct: 525 RCKLLTFVDLSRNELSGEIP-NEITAMKILNYLNLSRNHLVGSIPGSISSMQSLTSLDFS 583
Query: 530 FNNFSGAIP 538
+NN SG +P
Sbjct: 584 YNNLSGLVP 592
|
Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 244 bits (624), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 161/446 (36%), Positives = 236/446 (52%), Gaps = 15/446 (3%)
Query: 6 SSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASI 65
S +C+W G+ CD +Y V +LN+S LNL I +G+L +LQ++DL N +G IP I
Sbjct: 56 SDLCSWRGVFCDNVSYSVVSLNLSSLNLGGEISPAIGDLRNLQSIDLQGNKLAGQIPDEI 115
Query: 66 FNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSL 125
N +SL+ ++ N L+G++P + + L LE+L LK+N G +P+TL+ L+ L
Sbjct: 116 GNCASLVYLDLSENLLYGDIPFSI-SKLKQLETLNLKNNQLTGPVPATLTQIPNLKRLDL 174
Query: 126 SLNDF--------FWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAI 177
+ N +W+ Q L L NM G + SD+ + L ++ NN +G I
Sbjct: 175 AGNHLTGEISRLLYWNEV---LQYLGLRGNMLTGTLSSDMCQLTGLWYFDVRGNNLTGTI 231
Query: 178 PKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFL 237
P+ I N T + LD+ YN++ G IPY Q+ L L N+L+G +P M L L
Sbjct: 232 PESIGNCTSFQILDISYNQITGEIPYNIGFLQVATLSLQGNRLTGRIPEVIGLMQALAVL 291
Query: 238 DLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAI 297
DLS N L +P + NL F +LYL NM G IPS+ N S L L L N G I
Sbjct: 292 DLSDNELVGPIPP-ILGNLSFTGKLYLHGNMLTGPIPSELGNMSRLSYLQLNDNKLVGTI 350
Query: 298 PKEISNLTKLEKLDLQYNRLQGTILY-VGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQF 356
P E+ L +L +L+L NRL G I + L ++ N LSGS+P N+ L +
Sbjct: 351 PPELGKLEQLFELNLANNRLVGPIPSNISSCAALNQFNVHGNLLSGSIPLAFRNLGSLTY 410
Query: 357 LDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGA 416
L+LSSN ++P + H + L++L LS N F G IP + +L IL L N+ G
Sbjct: 411 LNLSSNNFKGKIPVELGH-IINLDKLDLSGNNFSGSIPLTLGDLEHLLILNLSRNHLSGQ 469
Query: 417 IPKEISNLTKLEKLDLQYNRLQGTIP 442
+P E NL ++ +D+ +N L G IP
Sbjct: 470 LPAEFGNLRSIQMIDVSFNLLSGVIP 495
|
Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 541 | ||||||
| 147769371 | 1241 | hypothetical protein VITISV_010511 [Viti | 0.887 | 0.386 | 0.409 | 7e-88 | |
| 147852480 | 1229 | hypothetical protein VITISV_039533 [Viti | 0.961 | 0.423 | 0.394 | 1e-87 | |
| 359485451 | 1454 | PREDICTED: LRR receptor-like serine/thre | 0.924 | 0.343 | 0.397 | 3e-87 | |
| 359483677 | 1229 | PREDICTED: LRR receptor-like serine/thre | 0.961 | 0.423 | 0.388 | 8e-86 | |
| 359485449 | 1583 | PREDICTED: LRR receptor-like serine/thre | 0.955 | 0.326 | 0.387 | 3e-85 | |
| 359483683 | 1228 | PREDICTED: LRR receptor-like serine/thre | 0.957 | 0.421 | 0.391 | 3e-84 | |
| 359483675 | 1250 | PREDICTED: LRR receptor-like serine/thre | 0.957 | 0.414 | 0.388 | 2e-80 | |
| 147776333 | 1205 | hypothetical protein VITISV_000078 [Viti | 0.992 | 0.445 | 0.327 | 7e-79 | |
| 359497186 | 1140 | PREDICTED: LRR receptor-like serine/thre | 0.961 | 0.456 | 0.335 | 6e-75 | |
| 302143445 | 2843 | unnamed protein product [Vitis vinifera] | 0.985 | 0.187 | 0.361 | 3e-74 |
| >gi|147769371|emb|CAN72496.1| hypothetical protein VITISV_010511 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 331 bits (848), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 210/513 (40%), Positives = 291/513 (56%), Gaps = 33/513 (6%)
Query: 37 IPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNL 96
IP ++ +L +L+ L N +GSIPA+IFN+SSLL+I+ NN L G LP + C L
Sbjct: 79 IPKKMNHLQNLKVLSFPMNNLTGSIPATIFNISSLLNISLSNNNLSGSLPKDMCYANPKL 138
Query: 97 ESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKR-----NWQQLYLSKNMFYG 151
+ L L SN GKIP+ L C +L+ SL+ NDF Q+L L N G
Sbjct: 139 KELNLSSNHLSGKIPTGLGQCIQLQVISLAYNDFTGSIPNGIGNLVELQRLSLRNNSLTG 198
Query: 152 EIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA-GHLYQL 210
EIPS+ ++C LR L L FN F+G IP+ I +L LE+L L +NKL G IP G+L +L
Sbjct: 199 EIPSNFSHCRELRGLSLSFNQFTGGIPQAIGSLCNLEELYLAFNKLTGGIPREIGNLSKL 258
Query: 211 QWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFY 270
L LS N +SG +P+ F + LQ +D S+N L+ E+P+N+ H
Sbjct: 259 NILQLSSNGISGPIPTEIFNISSLQEIDFSNNSLTGEIPSNLSH---------------- 302
Query: 271 GEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTI-LYVGHLLQ 329
C LR+L L FN F+G IP+ I +L+ LE L L YN+L G I +G+L
Sbjct: 303 ---------CRELRVLSLSFNQFTGGIPQAIGSLSNLEGLYLSYNKLTGGIPREIGNLSN 353
Query: 330 LQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMF 389
L L L N +SG +P+ FN+ LQ +D S+N LS LP ++ +LP L+ LYL N
Sbjct: 354 LNILQLGSNGISGPIPAEIFNISSLQIIDFSNNSLSGSLPMDICKHLPNLQGLYLLQNHL 413
Query: 390 YGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA-GHLF 448
G++P+ C L L L N F G+IP+EI NL+KLE + L+ N L G+IP + G+L
Sbjct: 414 SGQLPTTLSLCGELLYLSLAVNKFRGSIPREIGNLSKLEDISLRSNSLVGSIPTSFGNLM 473
Query: 449 QLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNM 508
L++LDL N L+G++P F + LQ L L N LS LP ++ LP LE LY+ +N
Sbjct: 474 ALKYLDLGMNFLTGTVPEAIFNISELQILVLVQNHLSGSLPPSIGTWLPDLEGLYIGSNK 533
Query: 509 FYGEIPSDTPNCSYLRILVVQFNNFSGAIPKEI 541
F G IP N S L L V N+F+G +PK++
Sbjct: 534 FSGTIPMSISNMSKLIQLQVWDNSFTGNVPKDL 566
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147852480|emb|CAN78527.1| hypothetical protein VITISV_039533 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 215/545 (39%), Positives = 311/545 (57%), Gaps = 25/545 (4%)
Query: 1 NWNTSSSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGS 60
NW+T SS CNW GI+C+ RV+A+N+S + L TI ++GNLS L +LDLS N+F S
Sbjct: 31 NWSTKSSYCNWYGISCNAPQQRVSAINLSNMGLEGTIAPQVGNLSFLISLDLSNNYFHDS 90
Query: 61 IPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRL 120
+P I L +N NN L G +P CN LS LE L+L +N G+IP ++ + L
Sbjct: 91 LPKDIGKCKELQQLNLFNNKLVGGIPEAICN-LSKLEELYLGNNQLIGEIPKKMNHLQNL 149
Query: 121 RETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKE 180
+ S +N+ G IP+ I N S L + L NN SG++P +
Sbjct: 150 KVLSFPMNN-------------------LTGFIPATIFNISSLLNISLSNNNLSGSLPMD 190
Query: 181 ISNLT-KLEKLDLQYNKLQGTIPYA-GHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLD 238
+ KL++L+L N L G IP G +LQ + L+ N +GS+PS + LQ L
Sbjct: 191 MCYANPKLKELNLSSNHLSGKIPTGLGQCLKLQVISLAYNDFTGSIPSGIGNLVELQRLS 250
Query: 239 LSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIP 298
L +N L+ E+P +F N+ L L L+ N GEIPS+ ++C LR+L L N F+G IP
Sbjct: 251 LQNNSLTGEIPQLLF-NISSLRLLNLAVNNLEGEIPSNLSHCRELRVLSLSINRFTGGIP 309
Query: 299 KEISNLTKLEKLDLQYNRLQGTI-LYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFL 357
+ I +L+ LE+L L YN+L G I +G+L L L L N +SG +P+ FN+ LQ +
Sbjct: 310 QAIGSLSDLEELYLGYNKLTGGIPREIGNLSNLNILQLGSNGISGPIPAEIFNISSLQGI 369
Query: 358 DLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAI 417
S+N LS LP ++ +LP L+ L L+ N G++P+ C L +L L FN F G+I
Sbjct: 370 GFSNNSLSGSLPMDICKHLPNLQWLDLALNHLSGQLPTTLSLCRELLVLSLSFNKFRGSI 429
Query: 418 PKEISNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQF 476
P+EI NL+KLE +DL N L G+IP + G+L L++L+L N L+G++P F + LQ
Sbjct: 430 PREIGNLSKLEWIDLSSNSLVGSIPTSFGNLMALKFLNLGINNLTGTVPEAIFNISKLQS 489
Query: 477 LDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGA 536
L ++ N LS LP+++ LP LE L++ N F G IP N S L L V N+F G
Sbjct: 490 LAMAINHLSGSLPSSIGTWLPDLEGLFIGGNEFSGIIPVSISNMSKLTQLDVSRNSFIGN 549
Query: 537 IPKEI 541
+PK++
Sbjct: 550 VPKDL 554
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359485451|ref|XP_002276944.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 329 bits (843), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 218/548 (39%), Positives = 302/548 (55%), Gaps = 48/548 (8%)
Query: 1 NWNTSSSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGS 60
NW+T SS C+W GI+C+ RV+A+N+S + L TI S++GNLS L +LDLS N+F S
Sbjct: 31 NWSTKSSYCSWYGISCNAPQQRVSAINLSNMGLQGTIVSQVGNLSFLVSLDLSNNYFHAS 90
Query: 61 IPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRL 120
+P I CN LS LE L+L +N G+IP T S + L
Sbjct: 91 LPKDI---------------------EAICN-LSKLEELYLGNNQLTGEIPKTFSHLRNL 128
Query: 121 RETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCS-YLRILVLQFNNFSGAIPK 179
+ SL +N+ G IP+ I N + L+ L L NN SG IP
Sbjct: 129 KILSLRMNNL-------------------TGSIPATIFNTNPNLKELNLTSNNLSGKIPT 169
Query: 180 EISNLTKLEKLDLQYNKLQGTIPYA-GHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLD 238
+ TKL+ + L YN+L G++P A G+L +LQ L L +N L+G +P + L+FL
Sbjct: 170 SLGQCTKLQVISLSYNELTGSMPRAIGNLVELQRLSLLNNSLTGEIPQSLLNISSLRFLR 229
Query: 239 LSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIP 298
L N L LPT++ ++LP LE + LS+N GEIPS +C LR+L L N+ +G IP
Sbjct: 230 LGENNLVGILPTSMGYDLPKLEFIDLSSNQLKGEIPSSLLHCRQLRVLSLSVNHLTGGIP 289
Query: 299 KEISNLTKLEKLDLQYNRLQGTI-LYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFL 357
K I +L+ LE+L L YN L G I +G+L L LD + +SG +P FN+ LQ +
Sbjct: 290 KAIGSLSNLEELYLDYNNLAGGIPREIGNLSNLNILDFGSSGISGPIPPEIFNISSLQII 349
Query: 358 DLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAI 417
DL+ N L LP ++ +LP L+ LYLS N G++PS C L+ L L N F G I
Sbjct: 350 DLTDNSLPGSLPMDICKHLPNLQGLYLSWNKLSGQLPSTLSLCGQLQSLSLWGNRFTGNI 409
Query: 418 PKEISNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQF 476
P NLT L+ L+L N + G IP G+L LQ+L LS N L+G +P F + LQ
Sbjct: 410 PPSFGNLTALQVLELAENNIPGNIPSELGNLINLQYLKLSANNLTGIIPEAIFNISSLQE 469
Query: 477 LDLSSNRLSTELPTNVFHNLPFLEELY---LSNNMFYGEIPSDTPNCSYLRILVVQFNNF 533
+D S+N LS LP ++ +LP L +L LS+N GEIPS +C +LR L + N F
Sbjct: 470 IDFSNNSLSGCLPMDICKHLPDLPKLEFIDLSSNQLKGEIPSSLSHCPHLRGLSLSLNQF 529
Query: 534 SGAIPKEI 541
+G IP+ I
Sbjct: 530 TGGIPQAI 537
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483677|ref|XP_003633000.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 324 bits (830), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 212/545 (38%), Positives = 307/545 (56%), Gaps = 25/545 (4%)
Query: 1 NWNTSSSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGS 60
NW+T +W GI+C+ V+A+N+S + L TI ++GNLS L +LDLS N F GS
Sbjct: 31 NWSTKRPHYSWIGISCNAPQLSVSAINLSNMGLEGTIAPQVGNLSFLVSLDLSNNHFHGS 90
Query: 61 IPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRL 120
+P I L +N NN L G +P CN LS LE L+L +N G+IP ++ + L
Sbjct: 91 LPKDIGKCKELQQLNLFNNKLVGGIPEAICN-LSKLEELYLGNNQLIGEIPKKMNHLQNL 149
Query: 121 RETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKE 180
+ S +N+ G IP+ I N S L + L NN SG++P +
Sbjct: 150 KVLSFPMNN-------------------LTGSIPATIFNISSLLNISLSNNNLSGSLPMD 190
Query: 181 ISNLT-KLEKLDLQYNKLQGTIPYA-GHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLD 238
+ KL+KL+L N L G IP G QLQ + L+ N +GS+PS + LQ L
Sbjct: 191 MCYANPKLKKLNLSSNHLSGKIPTGLGQCIQLQVISLAYNDFTGSIPSGIGNLVELQRLS 250
Query: 239 LSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIP 298
L +N + E+P +F N+ L L L+ N GEIPS+ ++C LR+L L FN F+G IP
Sbjct: 251 LQNNSFTGEIPQLLF-NISSLRFLNLAVNNLEGEIPSNLSHCRELRVLSLSFNQFTGGIP 309
Query: 299 KEISNLTKLEKLDLQYNRLQGTI-LYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFL 357
+ I +L+ LE+L L +N+L G I +G+L L L LS N +SG +P+ FN+ LQ +
Sbjct: 310 QAIGSLSNLEELYLSHNKLTGGIPREIGNLSNLNILQLSSNGISGPIPAEIFNVSSLQVI 369
Query: 358 DLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAI 417
+ N LS LP ++ +LP L+ L LS N G++P+ C L L L FN F G+I
Sbjct: 370 AFTDNSLSGSLPKDICKHLPNLQGLSLSQNHLSGQLPTTLSLCGELLFLSLSFNKFRGSI 429
Query: 418 PKEISNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQF 476
PKEI NL+KLEK+ L N L G+IP + G+L L++L+L N L+G++P F + LQ
Sbjct: 430 PKEIGNLSKLEKIYLGTNSLIGSIPTSFGNLKALKFLNLGINNLTGTVPEAIFNISKLQS 489
Query: 477 LDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGA 536
L + N LS LP+++ L LE L+++ N F G IP N S L +L + N+F+G
Sbjct: 490 LAMVKNHLSGSLPSSIGTWLSDLEGLFIAGNEFSGIIPMSISNMSKLTVLGLSANSFTGN 549
Query: 537 IPKEI 541
+PK++
Sbjct: 550 VPKDL 554
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359485449|ref|XP_002276919.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 213/550 (38%), Positives = 306/550 (55%), Gaps = 33/550 (6%)
Query: 1 NWNTSSSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGS 60
NW++++S CNW G++C+ R+TALN+S + L TIP ++ NLS L +LDLS N+F S
Sbjct: 239 NWSSTTSYCNWFGVSCNAHHGRLTALNLSNMGLEGTIPPQVSNLSFLASLDLSDNYFHAS 298
Query: 61 IPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRL 120
+P I N L + F NN L G +P + N LS LE +L SN G IP +S+ L
Sbjct: 299 LPNEIGNCRQLRQLYFFNNELTGSIPQSLGN-LSKLEESYLDSNHLTGDIPEEMSNLLSL 357
Query: 121 RETSLSLNDFFWD-----HTKRNWQQLYLSKNMFYGEIPSDIAN-CSYLRILVLQFNNFS 174
+ SL +N+ + Q + LS N YG +P D+ + L L L +N S
Sbjct: 358 KILSLFVNNLTGSIPSGIFNISSLQSISLSANDLYGNLPMDMCDRIPNLNGLYLSYNQLS 417
Query: 175 GAIPKEISNLTKLEKLDLQYNKLQGTIPYA-GHLYQLQWLDLSDNQLSGSLPSFKFKMPL 233
G IP + N KL+ + L YN+ G+IP G+L +L+ L L L+G +P F +
Sbjct: 418 GQIPTSLHNCAKLQLISLSYNEFIGSIPKGIGNLSELEVLYLGQKHLTGEIPEALFNISS 477
Query: 234 LQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNF 293
L+ DL SN LS LP+++ NLP LE + LS N G+IPS ++C LR L L FN F
Sbjct: 478 LRIFDLPSNNLSGTLPSSMCCNLPSLEVISLSWNQLKGKIPSSLSHCQELRTLSLSFNQF 537
Query: 294 SGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPL 353
+G+IP I NL+KLE+ LY+G N L+G LP +N+
Sbjct: 538 TGSIPLGIGNLSKLEE------------LYLG-----------INNLTGELPQALYNISS 574
Query: 354 LQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNF 413
L+ +DL SN S L T++ H LP L+ + LS N G+IPS +C L+I+ L FN F
Sbjct: 575 LRAIDLQSNIFSDFLHTDICHKLPALKVINLSRNQIKGKIPSSLSHCQELQIISLSFNQF 634
Query: 414 PGAIPKEISNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPSFKFKMP 472
G IP+ I +L+KLE+L L N L G IP G+L L+ L L N+L G +P F +
Sbjct: 635 VGGIPQAIGSLSKLEELYLGVNNLAGGIPRGMGNLLNLKMLSLVSNRLQGPIPEEIFNIS 694
Query: 473 LLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRIL-VVQFN 531
LQ +D ++N LS LP + ++LP L++L LS+N ++P + C L++L + N
Sbjct: 695 SLQMIDFTNNSLSGNLPIAICNHLPKLQQLILSSNQLSAQLPPNLSLCGQLQVLSSLSKN 754
Query: 532 NFSGAIPKEI 541
F+G+IP EI
Sbjct: 755 KFTGSIPIEI 764
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483683|ref|XP_003633001.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 319 bits (817), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 214/546 (39%), Positives = 314/546 (57%), Gaps = 28/546 (5%)
Query: 1 NWNTSSSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGS 60
NW+T SS C+W GI+C+ RV+A+N+S + L TI ++GNLS L +LDLS N+F GS
Sbjct: 31 NWSTKSSHCSWYGISCNAPQQRVSAINLSNMGLEGTIAPQVGNLSFLVSLDLSNNYFDGS 90
Query: 61 IPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRL 120
+P I L +N NN L G +P CN LS LE L+L +N G+IP +S+ L
Sbjct: 91 LPKDIGKCKELQQLNLFNNKLVGSIPEAICN-LSKLEELYLGNNQLIGEIPKKMSNLLNL 149
Query: 121 RETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKE 180
+ S +N+ G IP+ I N S L + L +N+ SG++P +
Sbjct: 150 KVLSFPMNN-------------------LTGSIPTTIFNMSSLLNISLSYNSLSGSLPMD 190
Query: 181 I--SNLTKLEKLDLQYNKLQGTIPYA-GHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFL 237
I +NL KL++L+L N L G +P G +LQ + LS N +GS+PS + LQ L
Sbjct: 191 ICYANL-KLKELNLSSNHLSGKVPTGLGQCIKLQGISLSCNDFTGSIPSGIGNLVELQSL 249
Query: 238 DLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAI 297
L +N L+ E+P ++F N+ L L L N GEI S ++C LR+L L N F+G I
Sbjct: 250 SLQNNSLTGEIPQSLF-NISSLRFLNLEINNLEGEI-SSFSHCRELRVLKLSINQFTGGI 307
Query: 298 PKEISNLTKLEKLDLQYNRLQGTI-LYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQF 356
PK + +L+ LE+L L YN+L G I +G+L L L L+ + ++G +P+ FN+ L
Sbjct: 308 PKALGSLSDLEELYLGYNKLTGGIPREIGNLSNLNILHLASSGINGPIPAEIFNISSLHR 367
Query: 357 LDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGA 416
+D ++N LS LP ++ +LP L+ LYLS N G++P+ C L +L L N F G+
Sbjct: 368 IDFTNNSLSGGLPMDICKHLPNLQGLYLSQNHLSGQLPTTLFLCGELLLLSLSINKFTGS 427
Query: 417 IPKEISNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQ 475
IP++I NL+KLEK+ L N L G+IP + G+L L++L L N L+G++P F + LQ
Sbjct: 428 IPRDIGNLSKLEKIYLSTNSLIGSIPTSFGNLKALKFLQLGSNNLTGTIPEDIFNISKLQ 487
Query: 476 FLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSG 535
L L+ N LS LP+++ LP LE L++ N F G IP N S L L + N F+G
Sbjct: 488 TLALAQNHLSGGLPSSIGTWLPDLEGLFIGGNEFSGTIPVSISNMSKLIRLHISDNYFTG 547
Query: 536 AIPKEI 541
+PK++
Sbjct: 548 NVPKDL 553
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483675|ref|XP_003632999.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 212/546 (38%), Positives = 309/546 (56%), Gaps = 28/546 (5%)
Query: 1 NWNTSSSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGS 60
NW+T SS C+W GI+C+ RV+A+N S + L TI ++GNLS L +LDLS N+F GS
Sbjct: 31 NWSTKSSHCSWYGISCNAPQQRVSAINSSNMGLEGTIAPQVGNLSFLVSLDLSNNYFHGS 90
Query: 61 IPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRL 120
+P I L +N NN L G +P CN LS LE L+L +N G+IP +S+ L
Sbjct: 91 LPKDIGKCKELQQLNLFNNKLVGSIPEAICN-LSKLEELYLGNNQLIGEIPKKMSNLLNL 149
Query: 121 RETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKE 180
+ S +N+ G IP+ I N S L + L +N+ SG++P +
Sbjct: 150 KILSFPMNN-------------------LTGSIPTTIFNMSSLLNISLSYNSLSGSLPMD 190
Query: 181 I--SNLTKLEKLDLQYNKLQGTIPYA-GHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFL 237
I +NL KL++L+L N L G +P G +LQ + LS N +GS+PS + LQ L
Sbjct: 191 ICYTNL-KLKELNLSSNHLSGKVPTGLGQCIKLQGISLSYNDFTGSIPSGIGNLVELQSL 249
Query: 238 DLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAI 297
L +N L+ E+P ++F N+ L L L N GEI S ++C LR+L L N F+G I
Sbjct: 250 SLQNNSLTGEIPQSLF-NIYSLRFLNLEINNLEGEI-SSFSHCRELRVLKLSINQFTGGI 307
Query: 298 PKEISNLTKLEKLDLQYNRLQGTI-LYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQF 356
PK + +L+ LE+L L YN+L G I +G L L L L+ + ++G +P+ FN+ L
Sbjct: 308 PKALGSLSDLEELYLGYNKLTGGIPREIGILSNLNILHLASSGINGPIPAEIFNISSLHR 367
Query: 357 LDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGA 416
+D ++N LS LP ++ +LP L+ LYLS N G++P+ C L +L L N F +
Sbjct: 368 IDFTNNSLSGGLPMDICKHLPNLQGLYLSQNHLSGQLPTTLFLCGELLLLSLSINKFTRS 427
Query: 417 IPKEISNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQ 475
IP++I NL+KL+K+ L N L G+IP + G+L L++L L N L G++P F + LQ
Sbjct: 428 IPRDIGNLSKLKKIYLSTNSLIGSIPTSFGNLKALKFLQLGSNNLIGTIPEDIFNISKLQ 487
Query: 476 FLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSG 535
L L+ N LS LP+++ LP LE L++ N F G IP N S L L + N F G
Sbjct: 488 TLALAQNHLSGGLPSSISTWLPDLEGLFIGGNEFSGTIPVSISNMSKLIRLHISDNYFIG 547
Query: 536 AIPKEI 541
+PK++
Sbjct: 548 NVPKDL 553
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147776333|emb|CAN72034.1| hypothetical protein VITISV_000078 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 301 bits (770), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 223/680 (32%), Positives = 324/680 (47%), Gaps = 143/680 (21%)
Query: 1 NWNTSSSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGS 60
NW+T SS CNW GI+C+ RV+ +N+S + L TI ++GNLS L +LDLS N+F S
Sbjct: 31 NWSTKSSYCNWYGISCNAPHQRVSXINLSNMGLEGTIAPQVGNLSFLVSLDLSNNYFHDS 90
Query: 61 IPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRL 120
+P I L +N NN L G +P CN LS LE L+L +N G+IP ++ + L
Sbjct: 91 LPKDIGKCKELQQLNLFNNKLVGGIPEAICN-LSKLEELYLGNNQLIGEIPKKMNXLQNL 149
Query: 121 RETSLSLN--------------------------------DFFWDHTKRNWQQLYLSKNM 148
+ S +N D + + K ++L LS N
Sbjct: 150 KVLSFPMNNLTSSIPATIFSISSLLNISLSNNNLSGSLPMDMCYANPK--LKELNLSSNH 207
Query: 149 FYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQ--------------- 193
G+IP+ + C L+++ L +N+F+G+IP I NL +L++L L+
Sbjct: 208 LSGKIPTGLGQCIKLQVISLAYNDFTGSIPNGIGNLVELQRLSLRNNSLTGEIPSNLSHC 267
Query: 194 ---------------------------------YNKLQGTIPYA-GHLYQLQWLDLSDNQ 219
+NKL G IP G+L L L L N
Sbjct: 268 RELRVLSSSFNQFTGGIPQAIGSLCNLEELYLAFNKLTGGIPREIGNLSNLNILQLGSNG 327
Query: 220 LSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTAN 279
+SG +P+ F + LQ +D ++N LS LP + +LP L+ LYL+ N G++P+ +
Sbjct: 328 ISGPIPAEIFNISSLQVIDFTNNSLSGSLPMGICKHLPNLQGLYLAQNHLSGQLPTTLSL 387
Query: 280 CSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTI-LYVGHLLQLQWLDLSDN 338
C L L L FN F G+IP+EI NL+KLE +DL+ N L G+I G+L L++L+L N
Sbjct: 388 CGELLFLSLSFNKFRGSIPREIGNLSKLEHIDLRSNSLVGSIPTSFGNLKALKFLNLGIN 447
Query: 339 QLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQ 398
L+G++P FN+ LQ L L N LS LP+++ LP LE LY+ N F G IP
Sbjct: 448 FLTGTVPEAIFNISELQNLALVQNHLSGSLPSSIGTWLPDLEGLYIGANEFSGTIPMSIS 507
Query: 399 NCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQ------------------------- 433
N S L +L L N+F G +PK++ NLTKL+ L+L
Sbjct: 508 NMSKLTVLSLSDNSFTGNVPKDLCNLTKLKFLNLAHNQLTDEHLASGVGFLTSLTNCKFL 567
Query: 434 ------YNRLQGTIP---------------YA-----------GHLFQLQWLDLSDNQLS 461
YN L+GT+P YA G+L L WLDL N L+
Sbjct: 568 RYLWIGYNPLKGTLPNSLGNLPIALESFTAYACQFRGTIPTGIGNLTNLIWLDLGANDLT 627
Query: 462 GSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCS 521
GS+P+ ++ LQ L ++ NR+ +P ++ H L L L LS+N G PS +
Sbjct: 628 GSIPTTLGRLQKLQRLHIAGNRIRGSIPNDLCH-LKNLGYLGLSSNKLSGSTPSCFGDLL 686
Query: 522 YLRILVVQFNNFSGAIPKEI 541
LR L + N + IP +
Sbjct: 687 ALRELFLDSNALAFNIPTSL 706
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359497186|ref|XP_003635448.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 202/602 (33%), Positives = 299/602 (49%), Gaps = 82/602 (13%)
Query: 1 NWNTSSSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGS 60
NW+T S C+W GI+C+ V+A+N+S + L TI ++GNLS L +LDLS N+F GS
Sbjct: 31 NWSTKSPHCSWIGISCNAPQQSVSAINLSNMGLEGTIAPQVGNLSFLVSLDLSDNYFHGS 90
Query: 61 IPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRL 120
+P I L +N NN L G +P CN LS LE L+L +N G+IP ++ + L
Sbjct: 91 LPKDIGKCKELQQLNLFNNKLVGGIPEAICN-LSKLEELYLGNNQLIGEIPKKMNHLQNL 149
Query: 121 RETSLSLNDFFWD------------------------------HTKRNWQQLYLSKNMFY 150
+ S +N+ + ++L LS N
Sbjct: 150 KVLSFPMNNLTGSIPATIFNISSLLNISLSNNNLSGSLPMDMCYANPKLKELNLSSNHLS 209
Query: 151 GEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQL 210
G+IP+ + C L+++ L +N+F+G+IP I NL +L++L LQ N
Sbjct: 210 GKIPTGLGQCIQLQVISLAYNDFTGSIPSGIDNLVELQRLSLQNNSFTA----------- 258
Query: 211 QWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFY 270
+ D+S L + F + LQ + + N LS LP ++ +LP L+ L LS N
Sbjct: 259 -FKDISKALLFAEI----FNVSSLQVIAFTDNSLSGSLPKDICKHLPNLQGLSLSQNHLS 313
Query: 271 GEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTI-LYVGHLLQ 329
G++P+ + C L L L FN F G+IPKEI NL+KLE++ L N L G+I G+L
Sbjct: 314 GQLPTTLSLCGELLFLSLSFNKFRGSIPKEIGNLSKLEEIYLGTNSLIGSIPTSFGNLKA 373
Query: 330 LQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMF 389
L++L+L N L+G++P FN+ LQ L + N LS LP+++ LP LE L+++ N F
Sbjct: 374 LKFLNLGINNLTGTVPEAIFNISKLQSLAMVKNHLSGSLPSSIGTWLPDLEGLFIAGNEF 433
Query: 390 YGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQ----------- 438
G IP N S L +L L N+F G +PK++ NLTKL+ LDL N+L
Sbjct: 434 SGIIPMSISNMSKLTVLGLSANSFTGNVPKDLGNLTKLKVLDLAGNQLTDEHVASEVGFL 493
Query: 439 --------------GTIPYAGHL--------FQLQWLDLSDNQLSGSLPSFKFKMPLLQF 476
G IP+ G L L+ S Q G++P+ + L
Sbjct: 494 TSLTNCKFLKNLWIGNIPFKGTLPNSLGNLPIALESFIASACQFRGTIPTGIGNLTNLIR 553
Query: 477 LDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGA 536
LDL +N L+ +PT L L+ LY++ N G IP+D + L L + N SG+
Sbjct: 554 LDLGANDLTGSIPT-TLGQLQKLQWLYIAGNRIRGSIPNDLCHLKDLGYLFLSSNKLSGS 612
Query: 537 IP 538
IP
Sbjct: 613 IP 614
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143445|emb|CBI22006.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 213/589 (36%), Positives = 310/589 (52%), Gaps = 56/589 (9%)
Query: 1 NWNTSSSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGS 60
NW+T SS C W GI+C+ RV+A+N+S + L TI ++GNLS L +LDLS N+F
Sbjct: 1066 NWSTKSSYCTWYGISCNAPQQRVSAINLSNMGLEGTIAPQVGNLSFLISLDLSNNYFHAF 1125
Query: 61 IPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIP---STLSSC 117
+P I L +N NN L G +P CN LS LE L+L +N G+IP +T+ +
Sbjct: 1126 LPKEIGKCKELQQLNLFNNNLVGSIPEAICN-LSKLEELYLGNNKLAGEIPKKMTTIFNI 1184
Query: 118 KRLRETSLSLNDFFWD------HTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFN 171
L SLS N + +T ++L LS N GEIP+ ++ C L+++ L +N
Sbjct: 1185 SSLLNISLSYNSLSGNLPMVMCNTNPKLKELNLSSNHLSGEIPTSLSQCIKLQVISLSYN 1244
Query: 172 NFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA-GHLYQLQWLDLSDNQLSGSLPSFKFK 230
F+G+IPK I NL +L++L + N L G IP + ++ L++L+L+ NQL G +PS
Sbjct: 1245 EFTGSIPKGIGNLVELQRLSFRNNNLIGEIPQSLFNISSLRFLNLAANQLEGEIPSNLSH 1304
Query: 231 MPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRIL---- 286
L+ L LS N+ + +P + +L LEELYL N G IPS+ N L IL
Sbjct: 1305 CRELRVLSLSLNQFTGGIPQAI-GSLSNLEELYLGYNNLGGGIPSEIGNLHNLNILNFDN 1363
Query: 287 ---------------------VLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTI-LYV 324
L NNF+ IP NLT +++L L+ N QG I +
Sbjct: 1364 NSLSGRSIIREIGNLSKLEQIYLGRNNFTSTIPPSFGNLTAIQELGLEENNFQGNIPKEL 1423
Query: 325 GHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYL 384
G L+ LQ L L N L+G +P N+ LQ L LS N LS LP+++ LP LE LY+
Sbjct: 1424 GKLINLQILHLGQNNLTGIVPEAIINISKLQVLSLSLNHLSGSLPSSIGTWLPNLEGLYI 1483
Query: 385 SNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKE----------ISNLTKLEKLDLQY 434
N F G+IP N S L + + N F G +PK+ ++N L KL +
Sbjct: 1484 GANEFSGKIPMSISNMSKLLFMDISNNYFIGNLPKDLDSELAFFTSLTNCISLRKLRIGG 1543
Query: 435 NRLQGTIPYA-GHL-FQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNV 492
N L+G IP + G+L ++ + QL G++P+ K LQ ++L SN L++E+P+++
Sbjct: 1544 NPLKGIIPNSLGNLSISIERIGARSCQLRGTIPTGK-----LQAINLHSNGLASEIPSSL 1598
Query: 493 FHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPKEI 541
+ L +L L LS+N GE+P + N L L + N FSG IP I
Sbjct: 1599 WI-LRYLLFLNLSSNFLNGELPLEVGNMKSLEELDLSKNQFSGNIPSTI 1646
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 541 | ||||||
| TAIR|locus:2120362 | 1249 | GSO1 "GASSHO1" [Arabidopsis th | 0.985 | 0.426 | 0.388 | 2.4e-75 | |
| TAIR|locus:2156349 | 1252 | GSO2 "GASSHO 2" [Arabidopsis t | 0.985 | 0.425 | 0.372 | 6.1e-73 | |
| TAIR|locus:2085949 | 1141 | AT3G24240 [Arabidopsis thalian | 0.990 | 0.469 | 0.358 | 3.1e-71 | |
| TAIR|locus:2154344 | 1135 | AT5G48940 [Arabidopsis thalian | 0.988 | 0.471 | 0.355 | 1.1e-70 | |
| TAIR|locus:2079142 | 1010 | AT3G47570 [Arabidopsis thalian | 0.983 | 0.526 | 0.362 | 2.7e-70 | |
| TAIR|locus:2167948 | 966 | ERL1 "ERECTA-like 1" [Arabidop | 0.948 | 0.531 | 0.353 | 4.3e-70 | |
| TAIR|locus:2170483 | 1173 | FLS2 "FLAGELLIN-SENSITIVE 2" [ | 0.951 | 0.439 | 0.357 | 8.6e-70 | |
| TAIR|locus:2075661 | 1025 | AT3G47110 [Arabidopsis thalian | 0.988 | 0.521 | 0.359 | 2.3e-69 | |
| TAIR|locus:2097310 | 1002 | BAM2 "BARELY ANY MERISTEM 2" [ | 0.985 | 0.531 | 0.354 | 3.5e-69 | |
| TAIR|locus:2075631 | 1009 | AT3G47090 [Arabidopsis thalian | 0.983 | 0.527 | 0.366 | 1.5e-68 |
| TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 767 (275.1 bits), Expect = 2.4e-75, P = 2.4e-75
Identities = 215/553 (38%), Positives = 295/553 (53%)
Query: 2 WNTSS-SVCNWTGITCD-VRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSG 59
WN+ + + C+WTG+TCD +RV ALN++GL LT +I G +L LDLS N G
Sbjct: 50 WNSDNINYCSWTGVTCDNTGLFRVIALNLTGLGLTGSISPWFGRFDNLIHLDLSSNNLVG 109
Query: 60 SIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKR 119
IP ++ N++SL S+ +N L GE+P L N+ SL + N G IP TL +
Sbjct: 110 PIPTALSNLTSLESLFLFSNQLTGEIPSQL-GSLVNIRSLRIGDNELVGDIPETLGNLVN 168
Query: 120 LRETSLS---LNDFFWDHTKR--NWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFS 174
L+ +L+ L R Q L L N G IP+++ NCS L + N +
Sbjct: 169 LQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLN 228
Query: 175 GAIPKEISNLTKLEKLDLQYNKLQGTIP-YAGHLYQLQWLDLSDNQLSGSLPSFKFKMPL 233
G IP E+ L LE L+L N L G IP G + QLQ+L L NQL G +P +
Sbjct: 229 GTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGN 288
Query: 234 LQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIP-SDTANCSYLRILVLRFNN 292
LQ LDLS+N L+ E+P F N+ L +L L+NN G +P S +N + L LVL
Sbjct: 289 LQTLDLSANNLTGEIPEE-FWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQ 347
Query: 293 FSGAIPKEISNLTKLEKLDLQYNRLQGTILY-VGHLLQLQWLDLSDNQLSGSL-PSFKFN 350
SG IP E+S L++LDL N L G+I + L++L L L +N L G+L PS N
Sbjct: 348 LSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSIS-N 406
Query: 351 MPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKF 410
+ LQ+L L N L +LP + L LE L+L N F GEIP + NC+ L+++ +
Sbjct: 407 LTNLQWLVLYHNNLEGKLPKEI-SALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFG 465
Query: 411 NNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPS-FK 468
N+F G IP I L +L L L+ N L G +P + G+ QL LDL+DNQLSGS+PS F
Sbjct: 466 NHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFG 525
Query: 469 FKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVV 528
F L Q + L +N L LP ++ +L L + LS+N G I + SYL V
Sbjct: 526 FLKGLEQLM-LYNNSLQGNLPDSLI-SLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVT 583
Query: 529 QFNNFSGAIPKEI 541
N F IP E+
Sbjct: 584 N-NGFEDEIPLEL 595
|
|
| TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 745 (267.3 bits), Expect = 6.1e-73, P = 6.1e-73
Identities = 206/553 (37%), Positives = 290/553 (52%)
Query: 1 NWNTSS-SVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSG 59
+WN+ S S CNWTG+TC R + LN+SGL LT +I +G ++L +DLS N G
Sbjct: 52 DWNSGSPSYCNWTGVTCGGR--EIIGLNLSGLGLTGSISPSIGRFNNLIHIDLSSNRLVG 109
Query: 60 SIPASIFNMSSLL-SINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCK 118
IP ++ N+SS L S++ +N L G++P L NL+SL L N +G IP T +
Sbjct: 110 PIPTTLSNLSSSLESLHLFSNLLSGDIPSQL-GSLVNLKSLKLGDNELNGTIPETFGNLV 168
Query: 119 RLRETSLS---LNDFFWDHTKR--NWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNF 173
L+ +L+ L R Q L L N G IP++I NC+ L + FN
Sbjct: 169 NLQMLALASCRLTGLIPSRFGRLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRL 228
Query: 174 SGAIPKEISNLTKLEKLDLQYNKLQGTIP-YAGHLYQLQWLDLSDNQLSGSLPSFKFKMP 232
+G++P E++ L L+ L+L N G IP G L +Q+L+L NQL G +P ++
Sbjct: 229 NGSLPAELNRLKNLQTLNLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELA 288
Query: 233 LLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDT-ANCSYLRILVLRFN 291
LQ LDLSSN L+ + F + LE L L+ N G +P +N + L+ L L
Sbjct: 289 NLQTLDLSSNNLTGVIHEE-FWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSET 347
Query: 292 NFSGAIPKEISNLTKLEKLDLQYNRLQGTIL-YVGHLLQLQWLDLSDNQLSGSLPSFKFN 350
SG IP EISN L+ LDL N L G I + L++L L L++N L G+L S N
Sbjct: 348 QLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISN 407
Query: 351 MPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKF 410
+ LQ L N L ++P + L LE +YL N F GE+P + NC+ L+ +
Sbjct: 408 LTNLQEFTLYHNNLEGKVPKEIGF-LGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYG 466
Query: 411 NNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPS-FK 468
N G IP I L L +L L+ N L G IP + G+ Q+ +DL+DNQLSGS+PS F
Sbjct: 467 NRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFG 526
Query: 469 FKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVV 528
F L F+ + +N L LP ++ NL L + S+N F G I + SYL V
Sbjct: 527 FLTALELFM-IYNNSLQGNLPDSLI-NLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVT 584
Query: 529 QFNNFSGAIPKEI 541
+ N F G IP E+
Sbjct: 585 E-NGFEGDIPLEL 596
|
|
| TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 727 (261.0 bits), Expect = 3.1e-71, P = 3.1e-71
Identities = 198/552 (35%), Positives = 293/552 (53%)
Query: 1 NWNT-SSSVCN-WTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFS 58
NWN+ ++ CN WT ITC + + +T ++I + L +++P L SLQ L +S +
Sbjct: 60 NWNSIDNTPCNNWTFITCSSQGF-ITDIDIESVPLQLSLPKNLPAFRSLQKLTISGANLT 118
Query: 59 GSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCK 118
G++P S+ + L ++ +N L G++P + + L NLE+L L SN GKIP +S C
Sbjct: 119 GTLPESLGDCLGLKVLDLSSNGLVGDIPWSL-SKLRNLETLILNSNQLTGKIPPDISKCS 177
Query: 119 RLRETSLSLNDFFWD-HTK----RNWQQLYLSKNM-FYGEIPSDIANCSYLRILVLQFNN 172
+L+ L N T+ + + + N G+IPS+I +CS L +L L +
Sbjct: 178 KLKSLILFDNLLTGSIPTELGKLSGLEVIRIGGNKEISGQIPSEIGDCSNLTVLGLAETS 237
Query: 173 FSGAIPKEISNLTKLEKLDLQYNKLQGTIPY-AGHLYQLQWLDLSDNQLSGSLPSFKFKM 231
SG +P + L KLE L + + G IP G+ +L L L +N LSGS+P ++
Sbjct: 238 VSGNLPSSLGKLKKLETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIPREIGQL 297
Query: 232 PLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFN 291
L+ L L N L +P + N L+ + LS N+ G IPS S+L ++ N
Sbjct: 298 TKLEQLFLWQNSLVGGIPEEI-GNCSNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISDN 356
Query: 292 NFSGAIPKEISNLTKLEKLDLQYNRLQGTI-LYVGHLLQLQWLDLSDNQLSGSLPSFKFN 350
FSG+IP ISN + L +L L N++ G I +G L +L NQL GS+P +
Sbjct: 357 KFSGSIPTTISNCSSLVQLQLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLAD 416
Query: 351 MPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKF 410
LQ LDLS N L+ +P+ +F L L +L L +N G IP + NCS L L L F
Sbjct: 417 CTDLQALDLSRNSLTGTIPSGLFM-LRNLTKLLLISNSLSGFIPQEIGNCSSLVRLRLGF 475
Query: 411 NNFPGAIPKEISNLTKLEKLDLQYNRLQGTIP-YAGHLFQLQWLDLSDNQLSGSLPSFKF 469
N G IP I +L K+ LD NRL G +P G +LQ +DLS+N L GSLP+
Sbjct: 476 NRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVS 535
Query: 470 KMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQ 529
+ LQ LD+S+N+ S ++P ++ L L +L LS N+F G IP+ CS L++L +
Sbjct: 536 SLSGLQVLDVSANQFSGKIPASL-GRLVSLNKLILSKNLFSGSIPTSLGMCSGLQLLDLG 594
Query: 530 FNNFSGAIPKEI 541
N SG IP E+
Sbjct: 595 SNELSGEIPSEL 606
|
|
| TAIR|locus:2154344 AT5G48940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 722 (259.2 bits), Expect = 1.1e-70, P = 1.1e-70
Identities = 196/552 (35%), Positives = 286/552 (51%)
Query: 2 WNTSSS-VCNWTGITCDVRTYR-VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSG 59
WN S S C W ITC + VT +N+ + L + P + + +SLQ L +S +G
Sbjct: 61 WNPSDSDPCQWPYITCSSSDNKLVTEINVVSVQLALPFPPNISSFTSLQKLVISNTNLTG 120
Query: 60 SIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKR 119
+I + I + S L+ I+ +N+L GE+P + L NL+ L L SN GKIP L C
Sbjct: 121 AISSEIGDCSELIVIDLSSNSLVGEIPSSL-GKLKNLQELCLNSNGLTGKIPPELGDCVS 179
Query: 120 LRETSLSLNDFFWDHTKRNWQQLYLSKNM-------FYGEIPSDIANCSYLRILVLQFNN 172
L+ + +++ ++ ++ +++ G+IP +I NC L++L L
Sbjct: 180 LKNLEI-FDNYLSENLPLELGKISTLESIRAGGNSELSGKIPEEIGNCRNLKVLGLAATK 238
Query: 173 FSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA-GHLYQLQWLDLSDNQLSGSLPSFKFKM 231
SG++P + L+KL+ L + L G IP G+ +L L L DN LSG+LP K+
Sbjct: 239 ISGSLPVSLGQLSKLQSLSVYSTMLSGEIPKELGNCSELINLFLYDNDLSGTLPKELGKL 298
Query: 232 PLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFN 291
L+ + L N L +P + + L + LS N F G IP N S L+ L+L N
Sbjct: 299 QNLEKMLLWQNNLHGPIPEEIGF-MKSLNAIDLSMNYFSGTIPKSFGNLSNLQELMLSSN 357
Query: 292 NFSGAIPKEISNLTKLEKLDLQYNRLQGTIL-YVGHLLQLQWLDLSDNQLSGSLPSFKFN 350
N +G+IP +SN TKL + + N++ G I +G L +L N+L G++P
Sbjct: 358 NITGSIPSILSNCTKLVQFQIDANQISGLIPPEIGLLKELNIFLGWQNKLEGNIPDELAG 417
Query: 351 MPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKF 410
LQ LDLS N L+ LP +F L L +L L +N G IP + NC+ L L L
Sbjct: 418 CQNLQALDLSQNYLTGSLPAGLFQ-LRNLTKLLLISNAISGVIPLEIGNCTSLVRLRLVN 476
Query: 411 NNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPSFKF 469
N G IPK I L L LDL N L G +P + QLQ L+LS+N L G LP
Sbjct: 477 NRITGEIPKGIGFLQNLSFLDLSENNLSGPVPLEISNCRQLQMLNLSNNTLQGYLPLSLS 536
Query: 470 KMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQ 529
+ LQ LD+SSN L+ ++P ++ H L L L LS N F GEIPS +C+ L++L +
Sbjct: 537 SLTKLQVLDVSSNDLTGKIPDSLGH-LISLNRLILSKNSFNGEIPSSLGHCTNLQLLDLS 595
Query: 530 FNNFSGAIPKEI 541
NN SG IP+E+
Sbjct: 596 SNNISGTIPEEL 607
|
|
| TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 713 (256.0 bits), Expect = 2.7e-70, P = 2.7e-70
Identities = 201/554 (36%), Positives = 283/554 (51%)
Query: 1 NWNTSSSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGS 60
+WN S +CNW G+TC + RVT L + L L I +GNLS L +LDL N+F G+
Sbjct: 46 SWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGGVISPSIGNLSFLVSLDLYENFFGGT 105
Query: 61 IPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRL 120
IP + +S L ++ N L G +P N S L +L L SN G +PS L S L
Sbjct: 106 IPQEVGQLSRLEYLDMGINYLRGPIPLGLYN-CSRLLNLRLDSNRLGGSVPSELGSLTNL 164
Query: 121 RETSLSLNDFFWD--HTKRNW---QQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSG 175
+ +L N+ + N +QL LS N GEIPSD+A + + L L NNFSG
Sbjct: 165 VQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGEIPSDVAQLTQIWSLQLVANNFSG 224
Query: 176 AIPKEISNLTKLEKLDLQYNKLQGTI-PYAGHLY-QLQWLDLSDNQLSGSLPSFKFKMPL 233
P + NL+ L+ L + YN G + P G L L ++ N +GS+P+ +
Sbjct: 225 VFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPNLLSFNMGGNYFTGSIPTTLSNIST 284
Query: 234 LQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDT------ANCSYLRILV 287
L+ L ++ N L+ +PT F N+P L+ L+L N + D NC+ L L
Sbjct: 285 LERLGMNENNLTGSIPT--FGNVPNLKLLFLHTNSLGSDSSRDLEFLTSLTNCTQLETLG 342
Query: 288 LRFNNFSGAIPKEISNLT-KLEKLDLQYNRLQGTILY-VGHLLQLQWLDLSDNQLSGSLP 345
+ N G +P I+NL+ KL LDL + G+I Y +G+L+ LQ L L N LSG LP
Sbjct: 343 IGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPYDIGNLINLQKLILDQNMLSGPLP 402
Query: 346 SFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRI 405
+ + L++L L SNRLS +P + N+ LE L LSNN F G +P+ NCS+L
Sbjct: 403 TSLGKLLNLRYLSLFSNRLSGGIPAFI-GNMTMLETLDLSNNGFEGIVPTSLGNCSHLLE 461
Query: 406 LVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSL 464
L + N G IP EI + +L +LD+ N L G++P G L L L L DN+LSG L
Sbjct: 462 LWIGDNKLNGTIPLEIMKIQQLLRLDMSGNSLIGSLPQDIGALQNLGTLSLGDNKLSGKL 521
Query: 465 PSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLR 524
P ++ L L N ++P L ++E+ LSNN G IP + S L
Sbjct: 522 PQTLGNCLTMESLFLEGNLFYGDIPD--LKGLVGVKEVDLSNNDLSGSIPEYFASFSKLE 579
Query: 525 ILVVQFNNFSGAIP 538
L + FNN G +P
Sbjct: 580 YLNLSFNNLEGKVP 593
|
|
| TAIR|locus:2167948 ERL1 "ERECTA-like 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
Identities = 188/532 (35%), Positives = 278/532 (52%)
Query: 1 NWNT--SSSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFS 58
+W+ +S +C+W G+ CD +Y V +LN+S LNL I +G+L +LQ++DL N +
Sbjct: 49 DWDDVHNSDLCSWRGVFCDNVSYSVVSLNLSSLNLGGEISPAIGDLRNLQSIDLQGNKLA 108
Query: 59 GSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCK 118
G IP I N +SL+ ++ N L+G++P + + L LE+L LK+N G +P+TL+
Sbjct: 109 GQIPDEIGNCASLVYLDLSENLLYGDIPFSI-SKLKQLETLNLKNNQLTGPVPATLTQIP 167
Query: 119 RLRETSLSLNDFFWDHTKR-NW----QQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNF 173
L+ L+ N + ++ W Q L L NM G + SD+ + L ++ NN
Sbjct: 168 NLKRLDLAGNHLTGEISRLLYWNEVLQYLGLRGNMLTGTLSSDMCQLTGLWYFDVRGNNL 227
Query: 174 SGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPL 233
+G IP+ I N T + LD+ YN++ G IPY Q+ L L N+L+G +P M
Sbjct: 228 TGTIPESIGNCTSFQILDISYNQITGEIPYNIGFLQVATLSLQGNRLTGRIPEVIGLMQA 287
Query: 234 LQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNF 293
L LDLS N L +P + NL F +LYL NM G IPS+ N S L L L N
Sbjct: 288 LAVLDLSDNELVGPIPP-ILGNLSFTGKLYLHGNMLTGPIPSELGNMSRLSYLQLNDNKL 346
Query: 294 SGAIPKEISNLTKLEKLDLQYNRLQGTI-LYVGHLLQLQWLDLSDNQLSGSLP-SFKFNM 351
G IP E+ L +L +L+L NRL G I + L ++ N LSGS+P +F+ N+
Sbjct: 347 VGTIPPELGKLEQLFELNLANNRLVGPIPSNISSCAALNQFNVHGNLLSGSIPLAFR-NL 405
Query: 352 PLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFN 411
L +L+LSSN ++P + H + L++L LS N F G IP + +L IL L N
Sbjct: 406 GSLTYLNLSSNNFKGKIPVELGHIIN-LDKLDLSGNNFSGSIPLTLGDLEHLLILNLSRN 464
Query: 412 NFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPSFKFK 470
+ G +P E NL ++ +D+ +N L G IP G L L L L++N+L G +P
Sbjct: 465 HLSGQLPAEFGNLRSIQMIDVSFNLLSGVIPTELGQLQNLNSLILNNNKLHGKIPDQLTN 524
Query: 471 MPLLQFLDLSSNRLSTELPT--NVFHNLP--FLEELYLSNNMFYGEIPSDTP 518
L L++S N LS +P N P F+ YL N + G I P
Sbjct: 525 CFTLVNLNVSFNNLSGIVPPMKNFSRFAPASFVGNPYLCGN-WVGSICGPLP 575
|
|
| TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 703 (252.5 bits), Expect = 8.6e-70, Sum P(2) = 8.6e-70
Identities = 189/529 (35%), Positives = 271/529 (51%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALF 82
+T L++SG LT IP + GNL +LQ+L L+ N G IPA I N SSL+ + +N L
Sbjct: 218 LTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLT 277
Query: 83 GELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKR----- 137
G++P N L L++L + N IPS+L +L LS N ++
Sbjct: 278 GKIPAELGN-LVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLE 336
Query: 138 NWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKL 197
+ + L L N F GE P I N L +L + FNN SG +P ++ LT L L N L
Sbjct: 337 SLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLL 396
Query: 198 QGTIPYA-GHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNL 256
G IP + + L+ LDLS NQ++G +P +M L F+ + N + E+P ++F N
Sbjct: 397 TGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLT-FISIGRNHFTGEIPDDIF-NC 454
Query: 257 PFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNR 316
LE L +++N G + LRIL + +N+ +G IP+EI NL L L L N
Sbjct: 455 SNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNG 514
Query: 317 LQGTI-LYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHN 375
G I + +L LQ L + N L G +P F+M LL LDLS+N+ S ++P +F
Sbjct: 515 FTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPA-LFSK 573
Query: 376 LPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEI-SNLTKLEK-LDLQ 433
L L L L N F G IP+ ++ S L + N G IP E+ ++L ++ L+
Sbjct: 574 LESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFS 633
Query: 434 YNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNV 492
N L GTIP G L +Q +DLS+N SGS+P + LD S N LS +P V
Sbjct: 634 NNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEV 693
Query: 493 FHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPKEI 541
F + + L LS N F GEIP N ++L L + NN +G IP+ +
Sbjct: 694 FQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESL 742
|
|
| TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 706 (253.6 bits), Expect = 2.3e-69, P = 2.3e-69
Identities = 200/556 (35%), Positives = 287/556 (51%)
Query: 1 NWNTSSSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGS 60
+WN S +C+WTG+ C ++ RVT +++ GL LT + +GNLS L++L+L+ N+F G+
Sbjct: 61 SWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTGVVSPFVGNLSFLRSLNLADNFFHGA 120
Query: 61 IPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRL 120
IP+ + N+ L +N NN LFG + P ++ S+L +L L SN +P S +L
Sbjct: 121 IPSEVGNLFRLQYLNMSNN-LFGGVIPVVLSNCSSLSTLDLSSNHLEQGVPLEFGSLSKL 179
Query: 121 RETSLSLNDFFWDHTKR-----NWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSG 175
SL N+ + Q L N GEIP DIA + + N F+G
Sbjct: 180 VLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGEIPGDIARLKQMIFFRIALNKFNG 239
Query: 176 AIPKEISNLTKLEKLDLQYNKLQGTI-PYAGHLY-QLQWLDLSDNQLSGSLPSFKFKMPL 233
P I NL+ L L + N GT+ P G L LQ L + N +G++P +
Sbjct: 240 VFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSLLPNLQILYMGINSFTGTIPETLSNISS 299
Query: 234 LQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMF--Y--GEIP--SDTANCSYLRILV 287
L+ LD+ SN L+ ++P + F L L L L+NN Y G++ NCS L+ L
Sbjct: 300 LRQLDIPSNHLTGKIPLS-FGRLQNLLLLGLNNNSLGNYSSGDLDFLGALTNCSQLQYLN 358
Query: 288 LRFNNFSGAIPKEISNL-TKLEKLDLQYNRLQGTILY-VGHLLQLQWLDLSDNQLSGSLP 345
+ FN G +P I+NL T+L +L L N + G+I + +G+L+ LQ LDL +N L+G LP
Sbjct: 359 VGFNKLGGQLPVFIANLSTQLTELSLGGNLISGSIPHGIGNLVSLQTLDLGENLLTGKLP 418
Query: 346 SFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRI 405
+ L+ + L SN LS E+P+++ N+ L LYL NN F G IPS +CSYL
Sbjct: 419 PSLGELSELRKVLLYSNGLSGEIPSSL-GNISGLTYLYLLNNSFEGSIPSSLGSCSYLLD 477
Query: 406 LVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSL 464
L L N G+IP E+ L L L++ +N L G + G L L LD+S N+LSG +
Sbjct: 478 LNLGTNKLNGSIPHELMELPSLVVLNVSFNLLVGPLRQDIGKLKFLLALDVSYNKLSGQI 537
Query: 465 PSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLR 524
P L+FL L N +P L L L LS N G IP N S L+
Sbjct: 538 PQTLANCLSLEFLLLQGNSFVGPIPD--IRGLTGLRFLDLSKNNLSGTIPEYMANFSKLQ 595
Query: 525 ILVVQFNNFSGAIPKE 540
L + NNF GA+P E
Sbjct: 596 NLNLSLNNFDGAVPTE 611
|
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| TAIR|locus:2097310 BAM2 "BARELY ANY MERISTEM 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 703 (252.5 bits), Expect = 3.5e-69, P = 3.5e-69
Identities = 195/550 (35%), Positives = 278/550 (50%)
Query: 1 NWNTSSSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGS 60
+WN S++ C+WTG+TCDV VT+L++SGLNL+ T+ S++ +L LQ L L+ N SG
Sbjct: 49 SWNLSTTFCSWTGVTCDVSLRHVTSLDLSGLNLSGTLSSDVAHLPLLQNLSLAANQISGP 108
Query: 61 IPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRL 120
IP I N+ L +N NN G P + L NL L L +N G +P +L++ +L
Sbjct: 109 IPPQISNLYELRHLNLSNNVFNGSFPDELSSGLVNLRVLDLYNNNLTGDLPVSLTNLTQL 168
Query: 121 RETSLSLNDFFWD--HTKRNWQQL-YL--SKNMFYGEIPSDIANCSYLRILVL-QFNNFS 174
R L N F T W L YL S N G+IP +I N + LR L + +N F
Sbjct: 169 RHLHLGGNYFSGKIPATYGTWPVLEYLAVSGNELTGKIPPEIGNLTTLRELYIGYYNAFE 228
Query: 175 GAIPKEISNLTKLEKLDLQYNKLQGTIP-YAGHLYQLQWLDLSDNQLSGSLPSFKFKMPL 233
+P EI NL++L + D L G IP G L +L L L N +G++ +
Sbjct: 229 NGLPPEIGNLSELVRFDAANCGLTGEIPPEIGKLQKLDTLFLQVNAFTGTITQELGLISS 288
Query: 234 LQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNF 293
L+ +DLS+N + E+PT+ F L L L L N YG IP L +L L NNF
Sbjct: 289 LKSMDLSNNMFTGEIPTS-FSQLKNLTLLNLFRNKLYGAIPEFIGEMPELEVLQLWENNF 347
Query: 294 SGAIPKEISNLTKLEKLDLQYNRLQGTI---LYVGHLLQLQWLDLSDNQLSGSLPSFKFN 350
+G+IP+++ +L LDL N+L GT+ + G+ +L L N L GS+P
Sbjct: 348 TGSIPQKLGENGRLVILDLSSNKLTGTLPPNMCSGN--RLMTLITLGNFLFGSIPDSLGK 405
Query: 351 MPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSY-LRILVLK 409
L + + N L+ +P +F LP L ++ L +N GE+P S L + L
Sbjct: 406 CESLTRIRMGENFLNGSIPKELF-GLPKLSQVELQDNYLTGELPISGGGVSGDLGQISLS 464
Query: 410 FNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIP-YAGHLFQLQWLDLSDNQLSGSLPSFK 468
N G++P I NL+ ++KL L N+ G+IP G L QL LD S N SG +
Sbjct: 465 NNQLSGSLPAAIGNLSGVQKLLLDGNKFSGSIPPEIGRLQQLSKLDFSHNLFSGRIAPEI 524
Query: 469 FKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVV 528
+ LL F+DLS N LS ++P N + L L LS N G IP + L +
Sbjct: 525 SRCKLLTFVDLSRNELSGDIP-NELTGMKILNYLNLSRNHLVGSIPVTIASMQSLTSVDF 583
Query: 529 QFNNFSGAIP 538
+NN SG +P
Sbjct: 584 SYNNLSGLVP 593
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| TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 698 (250.8 bits), Expect = 1.5e-68, P = 1.5e-68
Identities = 204/557 (36%), Positives = 284/557 (50%)
Query: 2 WNTSSSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSI 61
WN S +C+W + C + RVT L++ GL L I +GNLS L LDLS N F G+I
Sbjct: 47 WNNSFPLCSWKWVRCGRKHKRVTRLDLGGLQLGGVISPSIGNLSFLIYLDLSNNSFGGTI 106
Query: 62 PASIFNMSSL--LSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKR 119
P + N+ L L++ F N L GE+P + N S L L L SN +PS L S ++
Sbjct: 107 PQEMGNLFRLKYLAVGF--NYLEGEIPASLSN-CSRLLYLDLFSNNLGDGVPSELGSLRK 163
Query: 120 LRETSLSLNDFFWDHTK--RNWQQLY---LSKNMFYGEIPSDIANCSYLRILVLQFNNFS 174
L L LND RN L L N GEIP DIA S + L L NNFS
Sbjct: 164 LLYLYLGLNDLKGKFPVFIRNLTSLIVLNLGYNHLEGEIPDDIAMLSQMVSLTLTMNNFS 223
Query: 175 GAIPKEISNLTKLEKLDLQYNKLQGTI-PYAGHLY-QLQWLDLSDNQLSGSLPSFKFKMP 232
G P NL+ LE L L N G + P G+L + L L N L+G++P+ +
Sbjct: 224 GVFPPAFYNLSSLENLYLLGNGFSGNLKPDFGNLLPNIHELSLHGNFLTGAIPTTLANIS 283
Query: 233 LLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMF----YGEIPSDTA--NCSYLRIL 286
L+ + NR++ + N F L L L L+NN +G++ A NCS+L L
Sbjct: 284 TLEMFGIGKNRMTGSISPN-FGKLENLHYLELANNSLGSYSFGDLAFLDALTNCSHLHGL 342
Query: 287 VLRFNNFSGAIPKEISNL-TKLEKLDLQYNRLQGTILY-VGHLLQLQWLDLSDNQLSGSL 344
+ +N GA+P I N+ T+L L+L+ N + G+I + +G+L+ LQ L L+DN L+G L
Sbjct: 343 SVSYNRLGGALPTSIVNMSTELTVLNLKGNLIYGSIPHDIGNLIGLQSLLLADNLLTGPL 402
Query: 345 PSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLR 404
P+ N+ L L L SNR S E+P+ + NL L +LYLSNN F G +P +CS++
Sbjct: 403 PTSLGNLVGLGELILFSNRFSGEIPSFI-GNLTQLVKLYLSNNSFEGIVPPSLGDCSHML 461
Query: 405 ILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGS 463
L + +N G IPKEI + L L+++ N L G++P G L L L L +N LSG
Sbjct: 462 DLQIGYNKLNGTIPKEIMQIPTLVHLNMESNSLSGSLPNDIGRLQNLVELLLGNNNLSGH 521
Query: 464 LPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYL 523
LP K ++ + L N +P L ++ + LSNN G I N S L
Sbjct: 522 LPQTLGKCLSMEVIYLQENHFDGTIPD--IKGLMGVKNVDLSNNNLSGSISEYFENFSKL 579
Query: 524 RILVVQFNNFSGAIPKE 540
L + NNF G +P E
Sbjct: 580 EYLNLSDNNFEGRVPTE 596
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00018948001 | SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (1059 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 541 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 3e-80 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 6e-51 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 8e-17 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 8e-13 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-12 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-11 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-10 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 4e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-10 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 8e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 9e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 7e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 8e-08 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 9e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-07 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 5e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-06 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 6e-06 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 3e-05 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 4e-05 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 8e-05 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-04 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 5e-04 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.001 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.001 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 0.002 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.002 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 0.003 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.004 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 270 bits (691), Expect = 3e-80
Identities = 201/566 (35%), Positives = 292/566 (51%), Gaps = 77/566 (13%)
Query: 1 NWNTSSSVCNWTGITCD----------------------------VRT------------ 20
NWN+S+ VC W GITC+ ++T
Sbjct: 50 NWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPI 109
Query: 21 --------YRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLL 72
+ LN+S N T +IP G++ +L+TLDLS N SG IP I + SSL
Sbjct: 110 PDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLK 167
Query: 73 SINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFW 132
++ N L G++P + N L++LE L L SN G+IP L K L+
Sbjct: 168 VLDLGGNVLVGKIPNSLTN-LTSLEFLTLASNQLVGQIPRELGQMKSLK----------- 215
Query: 133 DHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDL 192
W +YL N GEIP +I + L L L +NN +G IP + NL L+ L L
Sbjct: 216 ------W--IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267
Query: 193 QYNKLQGTIPYA-GHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTN 251
NKL G IP + L +L LDLSDN LSG +P ++ L+ L L SN + ++P
Sbjct: 268 YQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327
Query: 252 VFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLD 311
+ +LP L+ L L +N F GEIP + + L +L L NN +G IP+ + + L KL
Sbjct: 328 L-TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI 386
Query: 312 LQYNRLQGTI-LYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPT 370
L N L+G I +G L+ + L DN SG LPS +PL+ FLD+S+N L + +
Sbjct: 387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS 446
Query: 371 NVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKL 430
+ ++P L+ L L+ N F+G +P D+ L L L N F GA+P+++ +L++L +L
Sbjct: 447 RKW-DMPSLQMLSLARNKFFGGLP-DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQL 504
Query: 431 DLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELP 489
L N+L G IP +L LDLS NQLSG +P+ +MP+L LDLS N+LS E+P
Sbjct: 505 KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564
Query: 490 TNVFHNLPFLEELYLSNNMFYGEIPS 515
N+ N+ L ++ +S+N +G +PS
Sbjct: 565 KNL-GNVESLVQVNISHNHLHGSLPS 589
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Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 187 bits (477), Expect = 6e-51
Identities = 144/416 (34%), Positives = 203/416 (48%), Gaps = 73/416 (17%)
Query: 32 NLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCN 91
NLT IPS LGNL +LQ L L N SG IP SIF++ L+S++ +N+L GE+P
Sbjct: 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP-ELVI 305
Query: 92 HLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYG 151
L NLE L L SN F GKIP L+S RL Q L L N F G
Sbjct: 306 QLQNLEILHLFSNNFTGKIPVALTSLPRL-------------------QVLQLWSNKFSG 346
Query: 152 EIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA-GHLYQL 210
EIP ++ + L +L L NN +G IP+ + + L KL L N L+G IP + G L
Sbjct: 347 EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSL 406
Query: 211 QWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFY 270
+ + L DN SG LPS K+PL+ FLD+S+N L + + + ++P L+ L L+ N F+
Sbjct: 407 RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLARNKFF 465
Query: 271 GEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTI-LYVGHLLQ 329
G +P + G+ +LE LDL N+ G + +G L +
Sbjct: 466 GGLP-----------------DSFGS--------KRLENLDLSRNQFSGAVPRKLGSLSE 500
Query: 330 LQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMF 389
L L LS+N+LSG +P +LSS + V L LS+N
Sbjct: 501 LMQLKLSENKLSGEIPD-----------ELSSCKKLVSLD--------------LSHNQL 535
Query: 390 YGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAG 445
G+IP+ L L L N G IPK + N+ L ++++ +N L G++P G
Sbjct: 536 SGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTG 591
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 8e-17
Identities = 62/183 (33%), Positives = 88/183 (48%), Gaps = 21/183 (11%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALF 82
V L+IS NL I S ++ SLQ L L+ N F G +P S F L +++ N
Sbjct: 430 VYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFS 488
Query: 83 GELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQL 142
G +P + LS L L L N G+IP LSSCK+L +SL+
Sbjct: 489 GAVPRKLGS-LSELMQLKLSENKLSGEIPDELSSCKKL----VSLD-------------- 529
Query: 143 YLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIP 202
LS N G+IP+ + L L L N SG IPK + N+ L ++++ +N L G++P
Sbjct: 530 -LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588
Query: 203 YAG 205
G
Sbjct: 589 STG 591
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Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 8e-13
Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 132 WDHTKRNW--QQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEK 189
+D TK W L L G IP+DI+ +L+ + L N+ G IP + ++T LE
Sbjct: 411 FDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEV 470
Query: 190 LDLQYNKLQGTIPYA-GHLYQLQWLDLSDNQLSGSLPS 226
LDL YN G+IP + G L L+ L+L+ N LSG +P+
Sbjct: 471 LDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA 508
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 3e-12
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 378 FLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRL 437
F++ L L N G IP+D +L+ + L N+ G IP + ++T LE LDL YN
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478
Query: 438 QGTIPYA-GHLFQLQWLDLSDNQLSGSLPS 466
G+IP + G L L+ L+L+ N LSG +P+
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPA 508
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 3e-11
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 258 FLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRL 317
F++ L L N G IP+D + +L+ + L N+ G IP + ++T LE LDL YN
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478
Query: 318 QGTI-LYVGHLLQLQWLDLSDNQLSGSLPS 346
G+I +G L L+ L+L+ N LSG +P+
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPA 508
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 1e-10
Identities = 27/62 (43%), Positives = 44/62 (70%)
Query: 25 ALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGE 84
++N+SG ++ IP LG+++SL+ LDLS+N F+GSIP S+ ++SL +N N+L G
Sbjct: 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR 505
Query: 85 LP 86
+P
Sbjct: 506 VP 507
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 61.5 bits (149), Expect = 4e-10
Identities = 84/232 (36%), Positives = 114/232 (49%), Gaps = 9/232 (3%)
Query: 152 EIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHL-YQL 210
+ ++ N L L L N I E+ LT L LDL N + P G L L
Sbjct: 84 DGSENLLNLLPLPSLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNITDIPPLIGLLKSNL 142
Query: 211 QWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFY 270
+ LDLSDN++ SLPS +P L+ LDLS N LS +LP + NL L L LS N
Sbjct: 143 KELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPK-LLSNLSNLNNLDLSGNKI- 198
Query: 271 GEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQL 330
++P + S L L L N+ + +SNL L L+L N+L+ +G+L L
Sbjct: 199 SDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNL 257
Query: 331 QWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEEL 382
+ LDLS+NQ+S S+ S ++ L+ LDLS N LS LP L L
Sbjct: 258 ETLDLSNNQIS-SISSLG-SLTNLRELDLSGNSLSNALPLIALLLLLLELLL 307
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 5e-10
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 175 GAIPKEISNLTKLEKLDLQYNKLQGTIPYA-GHLYQLQWLDLSDNQLSGSLPSFKFKMPL 233
G IP +IS L L+ ++L N ++G IP + G + L+ LDLS N +GS+P ++
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491
Query: 234 LQFLDLSSNRLSAELPTNV 252
L+ L+L+ N LS +P +
Sbjct: 492 LRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 5e-10
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 415 GAIPKEISNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPSFKFKMPL 473
G IP +IS L L+ ++L N ++G IP + G + L+ LDLS N +GS+P ++
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491
Query: 474 LQFLDLSSNRLSTELPTNV 492
L+ L+L+ N LS +P +
Sbjct: 492 LRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 8e-10
Identities = 75/204 (36%), Positives = 104/204 (50%), Gaps = 9/204 (4%)
Query: 299 KEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLD 358
E++NLT L+ + + I + L+ LDLSDN++ SLPS N+P L+ LD
Sbjct: 113 LELTNLTSLDLDNNNITDIPPLIGLLK--SNLKELDLSDNKIE-SLPSPLRNLPNLKNLD 169
Query: 359 LSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIP 418
LS N LS +LP + NL L L LS N ++P + + S L L L NN +
Sbjct: 170 LSFNDLS-DLPK-LLSNLSNLNNLDLSGNKI-SDLPPEIELLSALEELDLS-NNSIIELL 225
Query: 419 KEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLD 478
+SNL L L+L N+L+ G+L L+ LDLS+NQ+S S+ S + L+ LD
Sbjct: 226 SSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS-SISSLG-SLTNLRELD 283
Query: 479 LSSNRLSTELPTNVFHNLPFLEEL 502
LS N LS LP L L
Sbjct: 284 LSGNSLSNALPLIALLLLLLELLL 307
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 9e-09
Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 11 WTGITC----DVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIF 66
W+G C + + L + L IP+++ L LQ+++LS N G+IP S+
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG 463
Query: 67 NMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLS 126
+++SL ++ N+ G +P + L++L L L N G++P+ L + L S +
Sbjct: 464 SITSLEVLDLSYNSFNGSIPESL-GQLTSLRILNLNGNSLSGRVPAALGG-RLLHRASFN 521
Query: 127 LND 129
D
Sbjct: 522 FTD 524
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 295 GAIPKEISNLTKLEKLDLQYNRLQGTI-LYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPL 353
G IP +IS L L+ ++L N ++G I +G + L+ LDLS N +GS+P +
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491
Query: 354 LQFLDLSSNRLSVELPTNV 372
L+ L+L+ N LS +P +
Sbjct: 492 LRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 26/68 (38%), Positives = 40/68 (58%)
Query: 137 RNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNK 196
R+ Q + LS N G IP + + + L +L L +N+F+G+IP+ + LT L L+L N
Sbjct: 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501
Query: 197 LQGTIPYA 204
L G +P A
Sbjct: 502 LSGRVPAA 509
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 7e-08
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 357 LDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGA 416
L L + L +P N L L+ + LS N G IP + + L +L L +N+F G+
Sbjct: 423 LGLDNQGLRGFIP-NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 417 IPKEISNLTKLEKLDLQYNRLQGTIPYA--GHLFQLQWLDLSDN 458
IP+ + LT L L+L N L G +P A G L + +DN
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 8e-08
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 237 LDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGA 296
L L + L +P N L L+ + LS N G IP + + L +L L +N+F+G+
Sbjct: 423 LGLDNQGLRGFIP-NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 297 IPKEISNLTKLEKLDLQYNRLQGTI 321
IP+ + LT L L+L N L G +
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRV 506
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 9e-08
Identities = 62/218 (28%), Positives = 91/218 (41%), Gaps = 30/218 (13%)
Query: 290 FNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKF 349
+N +P +S L L+ L + +LL L LDL+ N+L S S
Sbjct: 55 SSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLR-SNISELL 113
Query: 350 NMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLK 409
+ L LDL +N ++ ++P + L+EL LS+N
Sbjct: 114 ELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKI-------------------- 152
Query: 410 FNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKF 469
++P + NL L+ LDL +N L +L L LDLS N++S LP
Sbjct: 153 -----ESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIE 206
Query: 470 KMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
+ L+ LDLS+N + L NL L L LSNN
Sbjct: 207 LLSALEELDLSNNSIIELLS--SLSNLKNLSGLELSNN 242
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 213 LDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGE 272
L L + L G +P+ K+ LQ ++LS N + +P + ++ LE L LS N F G
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGS 481
Query: 273 IPSDTANCSYLRILVLRFNNFSGAIP 298
IP + LRIL L N+ SG +P
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 5e-07
Identities = 33/104 (31%), Positives = 53/104 (50%)
Query: 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNAL 81
++ +L++S L+ IP+ + L LDLS N SG IP ++ N+ SL+ +N +N L
Sbjct: 524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583
Query: 82 FGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSL 125
G LP N ++ ++ G S L CKR+R+T
Sbjct: 584 HGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVRKTPS 627
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 453 LDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGE 512
L L + L G +P+ K+ LQ ++LS N + +P + ++ LE L LS N F G
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGS 481
Query: 513 IPSDTPNCSYLRILVVQFNNFSGAIP 538
IP + LRIL + N+ SG +P
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 6e-06
Identities = 75/338 (22%), Positives = 111/338 (32%), Gaps = 75/338 (22%)
Query: 207 LYQLQWLDLSDNQLSGSLPSFKFKM----PLLQFLDLSSNRLSAELPTNV------FHNL 256
L LQ L L N L P L+ L LS N +P +
Sbjct: 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET-GRIPRGLQSLLQGLTKG 80
Query: 257 PFLEELYLSNNMFYGEIPSDTANC---SYLRILVLRFNNFSGAIPKEI-----SNLTKLE 308
L+EL LS+N + + S L+ L L N + + LE
Sbjct: 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALE 140
Query: 309 KLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVEL 368
KL L NRL+G S L+ +L + L+ L+L++N +
Sbjct: 141 KLVLGRNRLEGA---------------SCEALAKALRA----NRDLKELNLANNGIGDAG 181
Query: 369 PTNVFHNLPF---LEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLT 425
+ L LE L L+NN + S L + ++L
Sbjct: 182 IRALAEGLKANCNLEVLDLNNNGL------TDEGASALAETL--------------ASLK 221
Query: 426 KLEKLDLQYNRLQGTIPYA------GHLFQLQWLDLSDNQL----SGSLPSFKFKMPLLQ 475
LE L+L N L A L L LS N + + L + L
Sbjct: 222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLL 281
Query: 476 FLDLSSNRLSTELPTNVFHNL----PFLEELYLSNNMF 509
LDL N+ E + +L LE L++ ++ F
Sbjct: 282 ELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 3e-05
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 329 QLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNM 388
L+ LDLS+N+L+ +P L+ LDLS N L+ + F LP L L LS N
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTS-ISPEAFSGLPSLRSLDLSGNN 59
Query: 389 F 389
Sbjct: 60 L 60
|
Length = 60 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 4e-05
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 449 QLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNM 508
L+ LDLS+N+L+ +P L+ LDLS N L++ + F LP L L LS N
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTS-ISPEAFSGLPSLRSLDLSGNN 59
Query: 509 F 509
Sbjct: 60 L 60
|
Length = 60 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 8e-05
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 209 QLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNM 268
L+ LDLS+N+L+ +P L+ LDLS N L+ + F LP L L LS N
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59
Query: 269 F 269
Sbjct: 60 L 60
|
Length = 60 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 35/105 (33%), Positives = 47/105 (44%), Gaps = 20/105 (19%)
Query: 74 INFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWD 133
+ N L G +P N + L +L+S+ L N G IP +L S TSL
Sbjct: 423 LGLDNQGLRGFIP-NDISKLRHLQSINLSGNSIRGNIPPSLGSI-----TSL-------- 468
Query: 134 HTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIP 178
+ L LS N F G IP + + LRIL L N+ SG +P
Sbjct: 469 ------EVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 5e-04
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 163 LRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA-GHLYQLQWLDLSDNQL 220
L+ L L N + L L+ LDL N L P A L L+ LDLS N L
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 0.001
Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 25/84 (29%)
Query: 234 LQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNF 293
L+ LDLS+NRL+ +P F LP L+ L LS N N
Sbjct: 2 LKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGN------------------------NL 36
Query: 294 SGAIPKEISNLTKLEKLDLQYNRL 317
+ P+ S L L LDL N L
Sbjct: 37 TSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.001
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 186 KLEKLDLQYNKLQGTIPYA-GHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRL 244
L+ LDL N+L A L L+ LDLS N L+ P +P L+ LDLS N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.002
Identities = 69/225 (30%), Positives = 98/225 (43%), Gaps = 26/225 (11%)
Query: 38 PSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLE 97
SEL L++L +LDL N + IP I + S L +++ LP +L NL+
Sbjct: 109 ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPL-RNLPNLK 166
Query: 98 SLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDI 157
+L L N L + L++ N L LS N ++P +I
Sbjct: 167 NLDLSFN--------------DLSDLPKLLSN------LSNLNNLDLSGNKI-SDLPPEI 205
Query: 158 ANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSD 217
S L L L N+ + +SNL L L+L NKL+ G+L L+ LDLS+
Sbjct: 206 ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSN 264
Query: 218 NQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEEL 262
NQ+S S+ S + L+ LDLS N LS LP L L
Sbjct: 265 NQIS-SISSLG-SLTNLRELDLSGNSLSNALPLIALLLLLLELLL 307
|
Length = 394 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.002
Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 25/84 (29%)
Query: 354 LQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNF 413
L+ LDLS+NRL+V +P F LP L+ L LS N N
Sbjct: 2 LKSLDLSNNRLTV-IPDGAFKGLPNLKVLDLSGN------------------------NL 36
Query: 414 PGAIPKEISNLTKLEKLDLQYNRL 437
P+ S L L LDL N L
Sbjct: 37 TSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 57/261 (21%), Positives = 88/261 (33%), Gaps = 44/261 (16%)
Query: 38 PSELGNLSSLQTLDLSFNWFSGSIPASI--FNMSSLLSINFINNALFGELPPNF-----C 90
L LQ LDLS N + SS L +NN G+
Sbjct: 74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLK 133
Query: 91 NHLSNLESLFLKSNMFHGK----IPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSK 146
+ LE L L N G + L + + L+E +L+ N + + L +
Sbjct: 134 DLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANC 193
Query: 147 NMFYGEIPSDIANCSYLRILVLQFNNF----SGAIPKEISNLTKLEKLDLQYNKLQGTIP 202
N L +L L N + A+ + +++L LE L+L N L
Sbjct: 194 N---------------LEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA 238
Query: 203 YA------GHLYQLQWLDLSDNQL----SGSLPSFKFKMPLLQFLDLSSNRLSAELPTNV 252
A L L LS N + + L + L LDL N+ E +
Sbjct: 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLL 298
Query: 253 FHNL----PFLEELYLSNNMF 269
+L LE L++ ++ F
Sbjct: 299 AESLLEPGNELESLWVKDDSF 319
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.004
Identities = 25/60 (41%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 426 KLEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRL 484
L+ LDL NRL A L L+ LDLS N L+ P +P L+ LDLS N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 541 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.97 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.96 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.96 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.94 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.94 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.9 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.89 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.84 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.78 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.7 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.67 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.62 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.62 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.6 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.59 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.58 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.5 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.15 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.14 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.14 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.14 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.13 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.11 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.1 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.08 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.03 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.01 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.97 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.97 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.87 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.85 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.85 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.83 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.81 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.8 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.79 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.74 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.7 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.64 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.55 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.54 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.41 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.36 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.16 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.11 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.09 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.08 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.07 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.98 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.96 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.86 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.83 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.82 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.8 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.74 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.69 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.57 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.55 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.47 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.47 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.28 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.96 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.82 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.8 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.61 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 95.9 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.47 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 94.61 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.21 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 93.5 | |
| PF08263 | 43 | LRRNT_2: Leucine rich repeat N-terminal domain; In | 92.78 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 91.09 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 89.36 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 88.88 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 88.2 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 86.77 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 86.77 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 84.54 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-56 Score=484.72 Aligned_cols=532 Identities=39% Similarity=0.566 Sum_probs=479.6
Q ss_pred CCCCCCCccccceeeeCCCCCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhh-hcCCCcEEEeecC
Q 036588 1 NWNTSSSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIF-NMSSLLSINFINN 79 (541)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~ 79 (541)
+|+...++|.|.|++|+. ..+++.|+++++++++.++.+|..+++|++|++++|.+.+.+|..+. ++++|++|++++|
T Consensus 50 ~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n 128 (968)
T PLN00113 50 NWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN 128 (968)
T ss_pred CCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC
Confidence 598889999999999985 56999999999999999999999999999999999999888888765 9999999999999
Q ss_pred ccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCccc-----cccccCcceEEEecCccccccCC
Q 036588 80 ALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFF-----WDHTKRNWQQLYLSKNMFYGEIP 154 (541)
Q Consensus 80 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~ 154 (541)
.+.+.+|.. .+++|++|++++|.+....|..++++++|++|+++++.+. .+...++|+.|++++|.+.+..|
T Consensus 129 ~l~~~~p~~---~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 205 (968)
T PLN00113 129 NFTGSIPRG---SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP 205 (968)
T ss_pred ccccccCcc---ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCC
Confidence 997777763 2899999999999999889999999999999999998764 34567899999999999998899
Q ss_pred ccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeeecc-CCCCcCCCCEEECCCCcccCCCCcccCCCCC
Q 036588 155 SDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIP-YAGHLYQLQWLDLSDNQLSGSLPSFKFKMPL 233 (541)
Q Consensus 155 ~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 233 (541)
..+..+++|+.|++++|.+....|..++.+++|++|++++|.+.+..+ .+..+++|+.|++++|.+.+..|..+..+++
T Consensus 206 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 285 (968)
T PLN00113 206 RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQK 285 (968)
T ss_pred hHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccC
Confidence 999999999999999999988899999999999999999999876544 4889999999999999998888888899999
Q ss_pred ccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEee
Q 036588 234 LQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQ 313 (541)
Q Consensus 234 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 313 (541)
|++|++++|.+.+..+.. +..+++|+.|++.+|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|+++
T Consensus 286 L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls 364 (968)
T PLN00113 286 LISLDLSDNSLSGEIPEL-VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLS 364 (968)
T ss_pred cCEEECcCCeeccCCChh-HcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECC
Confidence 999999999987666544 5889999999999999988889999999999999999999987888889999999999999
Q ss_pred CCcccccccc-ccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccC
Q 036588 314 YNRLQGTILY-VGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGE 392 (541)
Q Consensus 314 ~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 392 (541)
+|.+....+. +...++|+.+++++|.+....+..+..+++|+.|++++|.+++..+. .+..+++|+.+++++|.+.+.
T Consensus 365 ~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~ 443 (968)
T PLN00113 365 TNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS-EFTKLPLVYFLDISNNNLQGR 443 (968)
T ss_pred CCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh-hHhcCCCCCEEECcCCcccCc
Confidence 9988755443 67788999999999999888888889999999999999999865554 466899999999999999888
Q ss_pred CCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCCCCCccccCC
Q 036588 393 IPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKM 471 (541)
Q Consensus 393 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 471 (541)
.+..+..+++|+.|++++|.+....+..+ ..++|+.|++++|++.+..+. +..+++|+.|++++|.+...+|..+..+
T Consensus 444 ~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 522 (968)
T PLN00113 444 INSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC 522 (968)
T ss_pred cChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCc
Confidence 88788899999999999999887666655 458999999999999876665 7789999999999999998899999999
Q ss_pred CCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeecccccccCCCC
Q 036588 472 PLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPKE 540 (541)
Q Consensus 472 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~ 540 (541)
++|++|++++|.+.+.++ ..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|+++|.+|+.
T Consensus 523 ~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 523 KKLVSLDLSHNQLSGQIP-ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred cCCCEEECCCCcccccCC-hhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence 999999999999988777 67889999999999999999999999999999999999999999999963
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=431.35 Aligned_cols=492 Identities=35% Similarity=0.462 Sum_probs=445.0
Q ss_pred CCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEE
Q 036588 44 LSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRET 123 (541)
Q Consensus 44 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 123 (541)
..+++.|+++++.+.+.++..+..+++|++|++++|.+.+.+|..++.++++|++|++++|.+.+..|. +.+++|++|
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 357999999999999889999999999999999999998899999986699999999999999866664 568999999
Q ss_pred ecCCCccc-----cccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceee
Q 036588 124 SLSLNDFF-----WDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQ 198 (541)
Q Consensus 124 ~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~ 198 (541)
+++++.+. .+..+++|++|++++|.+.+..|..+.++++|+.|++++|.+....|..++++++|+.|++++|.+.
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence 99999775 3456789999999999998889999999999999999999998888999999999999999999887
Q ss_pred eecc-CCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCC
Q 036588 199 GTIP-YAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDT 277 (541)
Q Consensus 199 ~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 277 (541)
+..+ .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+.+..|..+
T Consensus 226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~ 304 (968)
T PLN00113 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI-FSLQKLISLDLSDNSLSGEIPELV 304 (968)
T ss_pred CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhH-hhccCcCEEECcCCeeccCCChhH
Confidence 6544 48899999999999999988889899999999999999999876666554 788999999999999988899999
Q ss_pred cCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccc-cccccCCCcEEeccCccccCCCCcccCCCCcceE
Q 036588 278 ANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTIL-YVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQF 356 (541)
Q Consensus 278 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 356 (541)
..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+ .+..+++|+.+++++|.+....+..+..+++|+.
T Consensus 305 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~ 384 (968)
T PLN00113 305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFK 384 (968)
T ss_pred cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCE
Confidence 999999999999999988888889999999999999999875444 3788899999999999998778888888999999
Q ss_pred EEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccc
Q 036588 357 LDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNR 436 (541)
Q Consensus 357 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 436 (541)
+.+++|.+.+..+. .+..+++|+.|++.+|.+.+..+..+..+++|+.+++++|.+....+..+..+++|+.|++++|+
T Consensus 385 L~l~~n~l~~~~p~-~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 463 (968)
T PLN00113 385 LILFSNSLEGEIPK-SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463 (968)
T ss_pred EECcCCEecccCCH-HHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCce
Confidence 99999998866554 45589999999999999988888889999999999999999998888888899999999999999
Q ss_pred cccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCC
Q 036588 437 LQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSD 516 (541)
Q Consensus 437 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 516 (541)
+.+..+.....++|+.|++++|.+....+..+..+++|++|++++|.+.+.+| ..+..+++|+.|++++|.+.+.+|..
T Consensus 464 ~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~ 542 (968)
T PLN00113 464 FFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP-DELSSCKKLVSLDLSHNQLSGQIPAS 542 (968)
T ss_pred eeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCC-hHHcCccCCCEEECCCCcccccCChh
Confidence 98777776677899999999999998889899999999999999999988787 66888999999999999999999999
Q ss_pred CCCccccceEEeecccccccCCCC
Q 036588 517 TPNCSYLRILVVQFNNFSGAIPKE 540 (541)
Q Consensus 517 ~~~~~~L~~L~l~~~~~~~~~p~~ 540 (541)
+..+++|+.|++++|++++.+|+.
T Consensus 543 ~~~l~~L~~L~Ls~N~l~~~~p~~ 566 (968)
T PLN00113 543 FSEMPVLSQLDLSQNQLSGEIPKN 566 (968)
T ss_pred HhCcccCCEEECCCCcccccCChh
Confidence 999999999999999999999974
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=278.86 Aligned_cols=366 Identities=27% Similarity=0.259 Sum_probs=302.0
Q ss_pred CCccEEEeccCcccccCCccccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEecc
Q 036588 161 SYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLS 240 (541)
Q Consensus 161 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 240 (541)
..-+.|++++|.+....+..|.++++|+++++..|.++.++.......+|+.|++.+|.+.++-...+..++.|+.++++
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 34566888888888777777888888888888888887666666666778888888888877777777788888888888
Q ss_pred CCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccc
Q 036588 241 SNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGT 320 (541)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 320 (541)
.|.++ .++...|..-.++++|++++|.++......|..+.+|..|.+++|.++......|.++++|+.|++..|.+...
T Consensus 158 rN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 158 RNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 88874 56666666667888888888888888888888888888888888888866667777888999999988887754
Q ss_pred -cccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcC
Q 036588 321 -ILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQN 399 (541)
Q Consensus 321 -~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 399 (541)
...|..+++|+.|.+..|.+...-+..|..+.++++|+++.|.+. ......+.++++|+.|++++|.+...-+.....
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf 315 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF 315 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcccccccchhhhhccchhhhheeecchhhh
Confidence 455888889999999988888777888889999999999999886 555655558999999999999988777777888
Q ss_pred CccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCCCC---CccccCCCCcc
Q 036588 400 CSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSL---PSFKFKMPLLQ 475 (541)
Q Consensus 400 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~ 475 (541)
+++|++|+++.|.+....++.|.-+..|++|++++|.+...... +..+++|++|+++.|.+.-.+ ...+.++++|+
T Consensus 316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr 395 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR 395 (873)
T ss_pred cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhh
Confidence 99999999999999988888999999999999999988755444 677889999999998775433 33567799999
Q ss_pred EeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeec
Q 036588 476 FLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQF 530 (541)
Q Consensus 476 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 530 (541)
.|++-||++ ..++...|.+++.|++|++.+|.+..+.+++|..+ .|++|.+..
T Consensus 396 kL~l~gNql-k~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 396 KLRLTGNQL-KSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred heeecCcee-eecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 999999999 67888999999999999999999998999999998 888887663
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=276.05 Aligned_cols=390 Identities=26% Similarity=0.233 Sum_probs=288.3
Q ss_pred CeEEEEecCCcceeeeCCcccCC--CCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEe
Q 036588 22 RVTALNISGLNLTVTIPSELGNL--SSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESL 99 (541)
Q Consensus 22 ~l~~L~l~~~~i~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 99 (541)
.-+.|+.++.++.......+..+ ..-+.||+++|++...-+..|.++++|+.+++..|.. +.+|..... ..+|+.|
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L-t~IP~f~~~-sghl~~L 130 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL-TRIPRFGHE-SGHLEKL 130 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchh-hhccccccc-ccceeEE
Confidence 45667777777764433334333 3345688888888877777788888888888888877 566654444 6668888
Q ss_pred eccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCc
Q 036588 100 FLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPK 179 (541)
Q Consensus 100 ~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~ 179 (541)
++..|.|.......+..++.|++ ||++.|.++.+-...|..-.++++|++++|+|++....
T Consensus 131 ~L~~N~I~sv~se~L~~l~alrs-------------------lDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~ 191 (873)
T KOG4194|consen 131 DLRHNLISSVTSEELSALPALRS-------------------LDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETG 191 (873)
T ss_pred eeeccccccccHHHHHhHhhhhh-------------------hhhhhchhhcccCCCCCCCCCceEEeeccccccccccc
Confidence 88888777666666666666666 66666666666556666667788888888888777777
Q ss_pred cccccCCCcEEEccCceeeeeccC-CCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCC
Q 036588 180 EISNLTKLEKLDLQYNKLQGTIPY-AGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPF 258 (541)
Q Consensus 180 ~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 258 (541)
.|..+.+|..|.+++|.++..+.. ++++++|+.|++..|.+...-.-.|..+++|+.+.+..|.+. .+.+++|..+.+
T Consensus 192 ~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~k 270 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEK 270 (873)
T ss_pred cccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecc
Confidence 777778888888888877766554 666888888888877776443445667788888888888773 667777788888
Q ss_pred CcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCcccccccc-ccccCCCcEEeccC
Q 036588 259 LEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILY-VGHLLQLQWLDLSD 337 (541)
Q Consensus 259 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~ 337 (541)
+++|+++.|++......++.+++.|+.|+++.|.+..........+++|+.|++++|.+...... +..+..|++|+++.
T Consensus 271 me~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~ 350 (873)
T KOG4194|consen 271 MEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSH 350 (873)
T ss_pred cceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccc
Confidence 88888888887777777778888888888888888777777777888888888888887765554 66777888888888
Q ss_pred ccccCCCCcccCCCCcceEEEcccCcCcCcC--ChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCC
Q 036588 338 NQLSGSLPSFKFNMPLLQFLDLSSNRLSVEL--PTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPG 415 (541)
Q Consensus 338 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 415 (541)
|.+.......|..+++|++|+++.|.+++.+ ....|..+++|..|.+.+|++......+|.++++|++|++.+|.+-.
T Consensus 351 Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 351 NSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIAS 430 (873)
T ss_pred cchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCccee
Confidence 8887776777777888888888888775433 34567778888888888888776666778888888888888888877
Q ss_pred ccchhhhccCCCcEEEccc
Q 036588 416 AIPKEISNLTKLEKLDLQY 434 (541)
Q Consensus 416 ~~~~~l~~~~~L~~L~l~~ 434 (541)
+.+.+|..+ .|++|.+..
T Consensus 431 Iq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 431 IQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred ecccccccc-hhhhhhhcc
Confidence 777888877 777776644
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=281.19 Aligned_cols=474 Identities=29% Similarity=0.357 Sum_probs=368.5
Q ss_pred eEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeecc
Q 036588 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLK 102 (541)
Q Consensus 23 l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 102 (541)
+..++++++++. .+.+.+.++..|.+|++..+++. .+|.+++.+..++.++.+.|++ ..+|..+.. +++|..++.+
T Consensus 47 l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~l-s~lp~~i~s-~~~l~~l~~s 122 (565)
T KOG0472|consen 47 LQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKL-SELPEQIGS-LISLVKLDCS 122 (565)
T ss_pred hhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchH-hhccHHHhh-hhhhhhhhcc
Confidence 567788888888 56666888888888888888887 8888888888888888888887 578888877 8888888888
Q ss_pred ccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCcccc
Q 036588 103 SNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEIS 182 (541)
Q Consensus 103 ~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~ 182 (541)
.+++. ..+..++++-.++. ++...|++. ..|.++..+.++..+++.++.+. ..|...-
T Consensus 123 ~n~~~-el~~~i~~~~~l~d-------------------l~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i 180 (565)
T KOG0472|consen 123 SNELK-ELPDSIGRLLDLED-------------------LDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHI 180 (565)
T ss_pred cccee-ecCchHHHHhhhhh-------------------hhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHH
Confidence 88777 67777777777666 444455555 45677888888888888888887 4444444
Q ss_pred ccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEE
Q 036588 183 NLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEEL 262 (541)
Q Consensus 183 ~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 262 (541)
.++.|++|+...|.+...++.++.+.+|..|++.+|++. ..| .|..+..|++++++.|.+ +.++.+..++++.+..|
T Consensus 181 ~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i-~~lpae~~~~L~~l~vL 257 (565)
T KOG0472|consen 181 AMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQI-EMLPAEHLKHLNSLLVL 257 (565)
T ss_pred HHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHH-HhhHHHHhcccccceee
Confidence 488888888888888878888888888988888888886 555 577888999999999887 46777887899999999
Q ss_pred EecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccC---CCcEE------
Q 036588 263 YLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLL---QLQWL------ 333 (541)
Q Consensus 263 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~---~L~~L------ 333 (541)
++..+++. ..|+.+.-+.+|++|++++|.++ ..|..++++ +|++|.+.+|++......+-..+ -|++|
T Consensus 258 DLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~ 334 (565)
T KOG0472|consen 258 DLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKD 334 (565)
T ss_pred eccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhcc
Confidence 99999887 77888888899999999999988 667778888 99999999998764322211111 11111
Q ss_pred -eccCcccc--------CCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCC--CccEEEccCcccccCCCcCCcCCcc
Q 036588 334 -DLSDNQLS--------GSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLP--FLEELYLSNNMFYGEIPSDTQNCSY 402 (541)
Q Consensus 334 -~l~~~~~~--------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~ 402 (541)
.++..... ...........+.+.|++++-+++ .+|...|+.-. -.+.+++++|++. .+|..+..+..
T Consensus 335 dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lke 412 (565)
T KOG0472|consen 335 DGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKE 412 (565)
T ss_pred CCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHH
Confidence 11111110 011112234567788999988887 78888886544 3889999999986 66777776666
Q ss_pred CCeE-EcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCC
Q 036588 403 LRIL-VLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSS 481 (541)
Q Consensus 403 L~~L-~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 481 (541)
+.+. .++++.++ ..+..++.+++|..|++++|.+-+....++.+..|+.++++.|.+. .+|..+.....++++-.++
T Consensus 413 lvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~ 490 (565)
T KOG0472|consen 413 LVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASN 490 (565)
T ss_pred HHHHHHhhcCccc-cchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcc
Confidence 5544 45555554 7888899999999999999988766666888889999999999887 7777777777788888888
Q ss_pred CccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeeccccc
Q 036588 482 NRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFS 534 (541)
Q Consensus 482 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 534 (541)
+++ +.++...+.++.+|..||+.+|.+. .+|..+.++.+|++|++.+|++.
T Consensus 491 nqi-~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 491 NQI-GSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccc-cccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 888 7788778999999999999999998 88999999999999999999997
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-35 Score=259.47 Aligned_cols=471 Identities=28% Similarity=0.346 Sum_probs=342.2
Q ss_pred CCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEe
Q 036588 20 TYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESL 99 (541)
Q Consensus 20 ~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 99 (541)
...+.++++++++.. .+|.+++.+..++.++.+++++. .+|.++..+..|+.++.+.|.. ..+|.++++ +..|..+
T Consensus 67 L~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~-~el~~~i~~-~~~l~dl 142 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNEL-KELPDSIGR-LLDLEDL 142 (565)
T ss_pred ccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccce-eecCchHHH-Hhhhhhh
Confidence 557899999999999 78999999999999999999998 9999999999999999999988 689999999 9999999
Q ss_pred eccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCc
Q 036588 100 FLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPK 179 (541)
Q Consensus 100 ~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~ 179 (541)
+..+|++. ..|..+..+.++.. +++.++.+....+..+ .++.|++|+...|.+. .+|.
T Consensus 143 ~~~~N~i~-slp~~~~~~~~l~~-------------------l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP~ 200 (565)
T KOG0472|consen 143 DATNNQIS-SLPEDMVNLSKLSK-------------------LDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TLPP 200 (565)
T ss_pred hccccccc-cCchHHHHHHHHHH-------------------hhccccchhhCCHHHH-HHHHHHhcccchhhhh-cCCh
Confidence 99999988 67778877777766 4555555554433333 3788888888777665 6777
Q ss_pred cccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCc-ccCCCCCccEEeccCCcccCcCChhhhccCCC
Q 036588 180 EISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPS-FKFKMPLLQFLDLSSNRLSAELPTNVFHNLPF 258 (541)
Q Consensus 180 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 258 (541)
.++.+.+|..|++..|.+. ..+.+..+..|+++.++.|.+. .+|. ....++++.+|+++.|.+. +.|.++ .-+.+
T Consensus 201 ~lg~l~~L~~LyL~~Nki~-~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~-clLrs 276 (565)
T KOG0472|consen 201 ELGGLESLELLYLRRNKIR-FLPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEI-CLLRS 276 (565)
T ss_pred hhcchhhhHHHHhhhcccc-cCCCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHH-HHhhh
Confidence 8888888888888888776 4447777888888888777776 4443 3446788888888888774 566655 56677
Q ss_pred CcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccc------cCCccE----EEeeCCcc---------cc
Q 036588 259 LEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISN------LTKLEK----LDLQYNRL---------QG 319 (541)
Q Consensus 259 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~------l~~L~~----L~l~~~~~---------~~ 319 (541)
|+.|+++++.++ ..|..++++ +|++|.+.||.+... .+.+-+ ++.|+. =.++...- ..
T Consensus 277 L~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTi-Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~ 353 (565)
T KOG0472|consen 277 LERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTI-RREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSE 353 (565)
T ss_pred hhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHH-HHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCC
Confidence 888888888776 677788888 788888888865311 111100 111111 00111110 01
Q ss_pred ccccccccCCCcEEeccCccccCCCCcccCCCC--cceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCC
Q 036588 320 TILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMP--LLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDT 397 (541)
Q Consensus 320 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 397 (541)
..+......+.++|++++-.++......|.... -...++++.|++. ++|.....--..++.+.++++.+. ..+..+
T Consensus 354 ~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l 431 (565)
T KOG0472|consen 354 SFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLEL 431 (565)
T ss_pred cccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHH
Confidence 122245566788888888888755555554332 3677889999886 677654422233456667776664 666677
Q ss_pred cCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEe
Q 036588 398 QNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFL 477 (541)
Q Consensus 398 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 477 (541)
..+++|..|++++|.+. ..|..+..+..|+.++++.|++.........+..++.+-.+.+++....++.+.+|.+|.+|
T Consensus 432 ~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tL 510 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTL 510 (565)
T ss_pred Hhhhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhccee
Confidence 88999999999998777 45667777888999999999887444445555667777777788887777778999999999
Q ss_pred eCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEee
Q 036588 478 DLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQ 529 (541)
Q Consensus 478 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 529 (541)
++.+|.+ ..+| ..+++|.+|++|+++||++. ..+..+-.-+....|..-
T Consensus 511 DL~nNdl-q~IP-p~LgnmtnL~hLeL~gNpfr-~Pr~~iLmkgT~aiL~yl 559 (565)
T KOG0472|consen 511 DLQNNDL-QQIP-PILGNMTNLRHLELDGNPFR-QPRHQILMKGTAAILSYL 559 (565)
T ss_pred ccCCCch-hhCC-hhhccccceeEEEecCCccC-CCHHHHhccChHHHHHHh
Confidence 9999999 5577 57899999999999999998 433334333444444333
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-33 Score=270.41 Aligned_cols=482 Identities=29% Similarity=0.324 Sum_probs=237.0
Q ss_pred eEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeecc
Q 036588 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLK 102 (541)
Q Consensus 23 l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 102 (541)
+..|+++.+-+....-+.+.+.-+|+.|||+++.+. .+|..+..+.+|+.|+++.|.+ ...|..... +.+|+++.|.
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i-~~vp~s~~~-~~~l~~lnL~ 99 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI-RSVPSSCSN-MRNLQYLNLK 99 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH-hhCchhhhh-hhcchhheec
Confidence 344444444444222333344444555555555554 5555555555555555555555 344544444 5555555555
Q ss_pred ccccCccCCccCCCCCCCcEEecCCCcccccc----ccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCC
Q 036588 103 SNMFHGKIPSTLSSCKRLRETSLSLNDFFWDH----TKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIP 178 (541)
Q Consensus 103 ~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 178 (541)
+++.. ..|..+..+++|++++++.+.+...+ .+..++.+..++|..... ++... ++.+++..+.+.+.++
T Consensus 100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~ 173 (1081)
T KOG0618|consen 100 NNRLQ-SLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFL 173 (1081)
T ss_pred cchhh-cCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchh
Confidence 55444 55555555555555555555544222 122333333444311111 11111 4444444444444444
Q ss_pred ccccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCC
Q 036588 179 KEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPF 258 (541)
Q Consensus 179 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 258 (541)
.++..++. .|++..|.+. ...+..+++|+.+....+.+... --.-++++.|..+.|.+..... .....+
T Consensus 174 ~~i~~l~~--~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~---~p~p~n 242 (1081)
T KOG0618|consen 174 IDIYNLTH--QLDLRYNEME--VLDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDV---HPVPLN 242 (1081)
T ss_pred cchhhhhe--eeecccchhh--hhhhhhccchhhhhhhhcccceE----EecCcchheeeeccCcceeecc---cccccc
Confidence 44444444 4555555443 22344445555555544443311 1123455555555554431110 112234
Q ss_pred CcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCc
Q 036588 259 LEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDN 338 (541)
Q Consensus 259 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 338 (541)
++.++++.+++. ..|.|+..+.+|+.+....|.+. ..+..+....+|+++.+..|.+....+.......|++|++..|
T Consensus 243 l~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 243 LQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred ceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc
Confidence 555555555554 33355555555555555555553 3333344445555555555555544444444555555555555
Q ss_pred cccCCCCcccCCCCc-ceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCcc
Q 036588 339 QLSGSLPSFKFNMPL-LQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAI 417 (541)
Q Consensus 339 ~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 417 (541)
.+.+..+.++..... |+.+..+.+.+. ..+...-...+.|+.|.+.+|.+++.....+.++++|+.|++++|++....
T Consensus 321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fp 399 (1081)
T KOG0618|consen 321 NLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFP 399 (1081)
T ss_pred cccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCC
Confidence 554333322222222 444444444443 222211123455666666666666555556666666666666666666555
Q ss_pred chhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCc
Q 036588 418 PKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLP 497 (541)
Q Consensus 418 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 497 (541)
...+.++..|++|+++||++.........++.|++|...+|.+. ..| .+..++.|+.+|++.|++......+.. ..+
T Consensus 400 as~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p 476 (1081)
T KOG0618|consen 400 ASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL-PSP 476 (1081)
T ss_pred HHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC-CCc
Confidence 55566666666666666666655444566666666666666665 455 455666666666666665332211211 125
Q ss_pred ccceeeeccceecccCCCCCCCccccceEEeec
Q 036588 498 FLEELYLSNNMFYGEIPSDTPNCSYLRILVVQF 530 (541)
Q Consensus 498 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 530 (541)
.|+.||++||.....-...|..+.++...++.-
T Consensus 477 ~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~ 509 (1081)
T KOG0618|consen 477 NLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITL 509 (1081)
T ss_pred ccceeeccCCcccccchhhhHHhhhhhheeccc
Confidence 666666666665433333444455555544443
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-31 Score=257.31 Aligned_cols=463 Identities=30% Similarity=0.323 Sum_probs=326.6
Q ss_pred CCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEee
Q 036588 21 YRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLF 100 (541)
Q Consensus 21 ~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 100 (541)
-+|.+|+++++.+. ..|..+..+++|+.|+++.|.+. ..|.+..++.+|+++.|.+|.. ..+|.++.+ +.+|++|+
T Consensus 45 v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l-~~lP~~~~~-lknl~~Ld 120 (1081)
T KOG0618|consen 45 VKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRL-QSLPASISE-LKNLQYLD 120 (1081)
T ss_pred eeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchh-hcCchhHHh-hhcccccc
Confidence 35999999999999 78999999999999999999998 8999999999999999999988 789999999 99999999
Q ss_pred ccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCcc
Q 036588 101 LKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKE 180 (541)
Q Consensus 101 l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 180 (541)
++.|.+. ..|..+..++.++.+.+++|..........++.+++..+.+.+.++..+..+.+ .|++..|.+.. -.
T Consensus 121 lS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---~d 194 (1081)
T KOG0618|consen 121 LSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---LD 194 (1081)
T ss_pred cchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhh---hh
Confidence 9999998 788888899999999999883322222233777888887777766666665555 58888887652 24
Q ss_pred ccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCc
Q 036588 181 ISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLE 260 (541)
Q Consensus 181 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 260 (541)
+..+.+|+.+....+.+.... ...++++.|..++|.+....+. ....+|++++++.+.+. .+| +....+++|+
T Consensus 195 ls~~~~l~~l~c~rn~ls~l~---~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp-~wi~~~~nle 267 (1081)
T KOG0618|consen 195 LSNLANLEVLHCERNQLSELE---ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLP-EWIGACANLE 267 (1081)
T ss_pred hhhccchhhhhhhhcccceEE---ecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cch-HHHHhcccce
Confidence 455566666666665544222 2245667777777766533222 23456777777777763 455 4446777777
Q ss_pred EEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCcccccccc-ccccC-CCcEEeccCc
Q 036588 261 ELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILY-VGHLL-QLQWLDLSDN 338 (541)
Q Consensus 261 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~-~L~~L~l~~~ 338 (541)
.+....|.+. ..|..+....+|+++.+..|.+. ..+.....+++|+.|++..|.+...... +.... .++.++.+.+
T Consensus 268 ~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n 345 (1081)
T KOG0618|consen 268 ALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSN 345 (1081)
T ss_pred EecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhc
Confidence 7777777764 55666666677777777777766 4455566677777777777776644433 12222 2555565655
Q ss_pred cccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccc
Q 036588 339 QLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIP 418 (541)
Q Consensus 339 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 418 (541)
.+.......-...+.|+.|.+.+|.+++. -...+.++++|+.|++++|++.......+.+++.|++|++++|++. ..+
T Consensus 346 ~l~~lp~~~e~~~~~Lq~LylanN~Ltd~-c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp 423 (1081)
T KOG0618|consen 346 KLSTLPSYEENNHAALQELYLANNHLTDS-CFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLP 423 (1081)
T ss_pred cccccccccchhhHHHHHHHHhcCccccc-chhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhh
Confidence 55433333334567788888888887733 3344567888888888888876444456778888888888888887 455
Q ss_pred hhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCC-CCccccCCCCccEeeCCCCccccccCcccccCCc
Q 036588 419 KEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGS-LPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLP 497 (541)
Q Consensus 419 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 497 (541)
..+.+|+.|++|...+|.+. ..|.+..++.|+.+|++.|.+... ++.... .|+|++|+++||.- ..+..+.+..+.
T Consensus 424 ~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~-l~~d~~~l~~l~ 500 (1081)
T KOG0618|consen 424 DTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTR-LVFDHKTLKVLK 500 (1081)
T ss_pred HHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCcc-cccchhhhHHhh
Confidence 77888888888888888877 445777888888888888887763 333322 37888888888875 223334555555
Q ss_pred ccceeeeccc
Q 036588 498 FLEELYLSNN 507 (541)
Q Consensus 498 ~L~~L~l~~~ 507 (541)
++..+++.-+
T Consensus 501 ~l~~~~i~~~ 510 (1081)
T KOG0618|consen 501 SLSQMDITLN 510 (1081)
T ss_pred hhhheecccC
Confidence 6555555544
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-30 Score=238.48 Aligned_cols=363 Identities=31% Similarity=0.363 Sum_probs=273.4
Q ss_pred CcceEEEecCcccc-ccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeeeccCCCCcCCCCEEEC
Q 036588 137 RNWQQLYLSKNMFY-GEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDL 215 (541)
Q Consensus 137 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 215 (541)
+..+-.++++|.++ +..|.....+..++-|.+....+. .+|+.++.+..|+.|.+..|++......+..+|.|+.+.+
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIV 85 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhh
Confidence 44566889999888 567888899999999999998877 7899999999999999999999888888999999999999
Q ss_pred CCCcccC-CCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccC
Q 036588 216 SDNQLSG-SLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFS 294 (541)
Q Consensus 216 ~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 294 (541)
.+|++.. .+|..+..+..|+.|+++.|.+. ..|... ...+++-.|+++.|++..+....|.+++.|-.|++++|.+.
T Consensus 86 R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~L-E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNL-EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred hccccccCCCCchhcccccceeeecchhhhh-hcchhh-hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh
Confidence 9988764 47777888999999999999884 566554 67788899999999988776667778888999999999876
Q ss_pred CCccccccccCCccEEEeeCCccccccc-cccccCCCcEEeccCcccc-CCCCcccCCCCcceEEEcccCcCcCcCChhh
Q 036588 295 GAIPKEISNLTKLEKLDLQYNRLQGTIL-YVGHLLQLQWLDLSDNQLS-GSLPSFKFNMPLLQFLDLSSNRLSVELPTNV 372 (541)
Q Consensus 295 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 372 (541)
..|..+..+..|+.|.+++|++...-. .+..+.+|++|.++++.-+ ..++..+-.+.+|..++++.|.+. .+|+..
T Consensus 164 -~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecl 241 (1255)
T KOG0444|consen 164 -MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECL 241 (1255)
T ss_pred -hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHH
Confidence 666678888899999999998764432 2666777888888877533 356666677788888888888775 566655
Q ss_pred hcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccc--cccCCCcccCCc
Q 036588 373 FHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQ--GTIPYAGHLFQL 450 (541)
Q Consensus 373 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L 450 (541)
+ .+++|..|++++|+++ .+........+|++|+++.|+++ ..|.++.++++|+.|.+.+|++. ++...++.+.+|
T Consensus 242 y-~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L 318 (1255)
T KOG0444|consen 242 Y-KLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL 318 (1255)
T ss_pred h-hhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh
Confidence 5 7788888888888776 44445556677788888888777 66777777777777777777654 233335566666
Q ss_pred ceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceec
Q 036588 451 QWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 451 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 510 (541)
+++...+|.+. ..|+.++.|+.|+.|.++.|.+.+ +| +.+.-++.|+.|+++.|+..
T Consensus 319 evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiT-LP-eaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 319 EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLIT-LP-EAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred HHHHhhccccc-cCchhhhhhHHHHHhcccccceee-ch-hhhhhcCCcceeeccCCcCc
Confidence 66666665554 556666666666666666666544 44 44555666666666666655
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-29 Score=235.92 Aligned_cols=368 Identities=26% Similarity=0.332 Sum_probs=243.9
Q ss_pred CCCeEEEEecCCcce-eeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcE
Q 036588 20 TYRVTALNISGLNLT-VTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLES 98 (541)
Q Consensus 20 ~~~l~~L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 98 (541)
.+.+|-.|++++.++ +..|.....++.++.|.|...++. .+|..+..+.+|++|.++.|++ .++...+.. +|+|+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L-~~vhGELs~-Lp~LRs 82 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQL-ISVHGELSD-LPRLRS 82 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhh-Hhhhhhhcc-chhhHH
Confidence 568899999999998 679999999999999999999998 8999999999999999999987 355566666 999999
Q ss_pred eeccccccCc-cCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccC
Q 036588 99 LFLKSNMFHG-KIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAI 177 (541)
Q Consensus 99 L~l~~~~~~~-~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 177 (541)
+.+..|++.. .+|..+.++..|.. |+++.|++. ..|..+.+.+++-.|++++|.|...-
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~-------------------lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIP 142 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTI-------------------LDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIP 142 (1255)
T ss_pred HhhhccccccCCCCchhccccccee-------------------eecchhhhh-hcchhhhhhcCcEEEEcccCccccCC
Confidence 9999888874 57778888887777 455555555 56777888888889999998888544
Q ss_pred CccccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCC
Q 036588 178 PKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLP 257 (541)
Q Consensus 178 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 257 (541)
..-+.+++.|-.|++++|.+...++....+.+|++|.+++|.+.......+..+.+|.+|.+++..-+-
T Consensus 143 n~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl----------- 211 (1255)
T KOG0444|consen 143 NSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL----------- 211 (1255)
T ss_pred chHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh-----------
Confidence 445678888888899888888777778888888888888887653333334445555555555543211
Q ss_pred CCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccC
Q 036588 258 FLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSD 337 (541)
Q Consensus 258 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 337 (541)
...|..+..+.+|..++++.|.+. ..|+.+.++++|++|++++|.++........-.+|++|+++.
T Consensus 212 -------------~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSr 277 (1255)
T KOG0444|consen 212 -------------DNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSR 277 (1255)
T ss_pred -------------hcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhcccc
Confidence 123344444555555555555544 455555555666666666665554444444445555555555
Q ss_pred ccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCcc
Q 036588 338 NQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAI 417 (541)
Q Consensus 338 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 417 (541)
|+++ .++..+..+++|+.|.+.+|.++.+-.......+..|+.+...+|.+. ..|+.+..|..|+.|.++.|++- ..
T Consensus 278 NQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TL 354 (1255)
T KOG0444|consen 278 NQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TL 354 (1255)
T ss_pred chhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-ec
Confidence 5555 444555555555555555555442222222234555555555555543 44555555555555555555544 34
Q ss_pred chhhhccCCCcEEEccccccc
Q 036588 418 PKEISNLTKLEKLDLQYNRLQ 438 (541)
Q Consensus 418 ~~~l~~~~~L~~L~l~~~~~~ 438 (541)
|++++-++.|+.|++..|.-.
T Consensus 355 PeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 355 PEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhhhhhcCCcceeeccCCcCc
Confidence 555555555555655555544
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-22 Score=217.62 Aligned_cols=344 Identities=23% Similarity=0.211 Sum_probs=245.6
Q ss_pred CCccccCCCCccEEEeccCcc------cccCCcccccc-CCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCC
Q 036588 153 IPSDIANCSYLRILVLQFNNF------SGAIPKEISNL-TKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLP 225 (541)
Q Consensus 153 ~~~~~~~~~~L~~L~l~~~~i------~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 225 (541)
.+..|..+++|+.|.+..+.. ....|..+..+ ..|+.|.+.++.+...+..+ .+.+|+.|++.++.+. .++
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc-ccc
Confidence 345678889999998865432 22355566655 46899999888777665555 5688999999988876 455
Q ss_pred cccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccC
Q 036588 226 SFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLT 305 (541)
Q Consensus 226 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 305 (541)
..+..+++|+.++++++.....++. +..+++|+.|++.+|......|..+..+++|+.|++++|.....+|..+ +++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~ 704 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK 704 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence 6667788999999988754445553 5678899999999887666788888888999999999876554555544 688
Q ss_pred CccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcC------cCChhhhcCCCCc
Q 036588 306 KLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSV------ELPTNVFHNLPFL 379 (541)
Q Consensus 306 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~~~L 379 (541)
+|+.|++++|......+. ...+|+.|+++++.+.. ++..+ .+++|++|.+.++.... ......+..+++|
T Consensus 705 sL~~L~Lsgc~~L~~~p~--~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL 780 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPD--ISTNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL 780 (1153)
T ss_pred CCCEEeCCCCCCcccccc--ccCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccchhhhhccccc
Confidence 899999988865433332 24578888888887763 33332 56778888776643210 1111122245788
Q ss_pred cEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCc
Q 036588 380 EELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQ 459 (541)
Q Consensus 380 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 459 (541)
+.|++++|+....+|..+..+++|+.|++++|......|... .+++|+.|++++|......+. ...+|+.|+++++.
T Consensus 781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~Ls~n~ 857 (1153)
T PLN03210 781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD--ISTNISDLNLSRTG 857 (1153)
T ss_pred hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc--cccccCEeECCCCC
Confidence 889998887766777788888899999998886544455444 678888999988865433332 24678888888888
Q ss_pred CCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceec
Q 036588 460 LSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 460 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 510 (541)
+. .+|..+..+++|++|++++|+....++ ..+..+++|+.+++++|...
T Consensus 858 i~-~iP~si~~l~~L~~L~L~~C~~L~~l~-~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 858 IE-EVPWWIEKFSNLSFLDMNGCNNLQRVS-LNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred Cc-cChHHHhcCCCCCEEECCCCCCcCccC-cccccccCCCeeecCCCccc
Confidence 87 677778888889999998887767676 34567788888888888744
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.5e-22 Score=213.90 Aligned_cols=343 Identities=24% Similarity=0.199 Sum_probs=263.7
Q ss_pred CCccccccCCCcEEEccCceee------e-eccCCCCc-CCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcC
Q 036588 177 IPKEISNLTKLEKLDLQYNKLQ------G-TIPYAGHL-YQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAEL 248 (541)
Q Consensus 177 ~~~~l~~l~~L~~L~l~~~~~~------~-~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 248 (541)
....|..+++|+.|.+..+... . .+..+..+ ++|+.|.+.++.+. .+|..+ ...+|+.|++.++.+. .+
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L 626 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KL 626 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cc
Confidence 3456788999999998654321 1 22234443 56999999998876 556555 5689999999999874 45
Q ss_pred ChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccC
Q 036588 249 PTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLL 328 (541)
Q Consensus 249 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 328 (541)
+..+ ..+++|+.++++++......| .+..+++|+.|++++|......+..+..+++|+.|++++|......+....++
T Consensus 627 ~~~~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~ 704 (1153)
T PLN03210 627 WDGV-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLK 704 (1153)
T ss_pred cccc-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCC
Confidence 5443 788999999999876444555 47889999999999987766788889999999999999986554555444789
Q ss_pred CCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccC-------CCcCCcCCc
Q 036588 329 QLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGE-------IPSDTQNCS 401 (541)
Q Consensus 329 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~~~ 401 (541)
+|+.|++++|.....++. ..++|+.|.++++.+. .++... .+++|..|.+.++..... .+..+..++
T Consensus 705 sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCEEeCCCCCCcccccc---ccCCcCeeecCCCccc-cccccc--cccccccccccccchhhccccccccchhhhhccc
Confidence 999999999975544432 3468999999999875 555543 578898888877543211 111233457
Q ss_pred cCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCC
Q 036588 402 YLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSS 481 (541)
Q Consensus 402 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 481 (541)
+|+.|++++|......|..+.++++|+.|++++|......|....+++|+.|++++|.....+|.. .++|+.|++++
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~ 855 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STNISDLNLSR 855 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccccCEeECCC
Confidence 999999999987777888999999999999999976656666557899999999999765455543 46899999999
Q ss_pred CccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeecccccc
Q 036588 482 NRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSG 535 (541)
Q Consensus 482 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 535 (541)
|.+ ..+| ..+..+++|+.|++.+|+....++..+..+++|+.+++.+|.-..
T Consensus 856 n~i-~~iP-~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 856 TGI-EEVP-WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred CCC-ccCh-HHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 998 5577 567889999999999999887888889999999999999996554
|
syringae 6; Provisional |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.3e-23 Score=182.97 Aligned_cols=132 Identities=23% Similarity=0.267 Sum_probs=109.4
Q ss_pred CCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeec-CccCCCCChhhhhhcCCCcEe
Q 036588 21 YRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFIN-NALFGELPPNFCNHLSNLESL 99 (541)
Q Consensus 21 ~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L 99 (541)
.....|.|..|+|+.+.+++|+.+++||.|||+.|.++.+.|.+|.++++|..|.+.+ |+| +.+|...++++.+|+-|
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI-~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI-TDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch-hhhhhhHhhhHHHHHHH
Confidence 3678899999999999999999999999999999999988999999999999998888 666 89999999999999999
Q ss_pred eccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCc
Q 036588 100 FLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNN 172 (541)
Q Consensus 100 ~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 172 (541)
.+.-+++.......|..++++.. |.+..+.+..+-...|..+..++.+.+..+.
T Consensus 146 llNan~i~Cir~~al~dL~~l~l-------------------LslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSL-------------------LSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcch-------------------hcccchhhhhhccccccchhccchHhhhcCc
Confidence 99999998777778888888877 4444555544333456666666666666554
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4e-21 Score=170.59 Aligned_cols=385 Identities=23% Similarity=0.183 Sum_probs=218.7
Q ss_pred CcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccC-ceeeeeccC-CCCcCCCCEEE
Q 036588 137 RNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQY-NKLQGTIPY-AGHLYQLQWLD 214 (541)
Q Consensus 137 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~-~~~~~~L~~L~ 214 (541)
+.-..+++..|+|..+.+..|+.+++|+.|+++.|.|..+.|.+|..+.+|.+|-+.+ |.+++.... ++.+..++.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 4455678888888877778888888888888888888888888888888887776666 777766655 67777788777
Q ss_pred CCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccc------------cCCCCCcCccc
Q 036588 215 LSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYG------------EIPSDTANCSY 282 (541)
Q Consensus 215 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------------~~~~~~~~~~~ 282 (541)
+.-+.+.-...+.+..++++..|.+..+.+ ..+....|..+..++.+.+..+.+.. ..+..+++..-
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhh-hhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 777776656666777778888888877776 35555566777777777776654211 11111222111
Q ss_pred ccEEEecccccCCCcccccc-ccCCccEEEeeCCccccccc--cccccCCCcEEeccCccccCCCCcccCCCCcceEEEc
Q 036588 283 LRILVLRFNNFSGAIPKEIS-NLTKLEKLDLQYNRLQGTIL--YVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDL 359 (541)
Q Consensus 283 L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 359 (541)
.....+.+..+.......+. ....+.+-..+.+......+ .|..+++|+.+++++|.++.+.+.+|.....+++|.+
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 11111222222111111110 01111111112222221222 2666677777777777766666666666677777777
Q ss_pred ccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCC-----ccchhhh--------cc--
Q 036588 360 SSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPG-----AIPKEIS--------NL-- 424 (541)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~l~--------~~-- 424 (541)
.+|.+. .+...+|.++..|+.|++.+|+++...+..|....+|.+|.+-.|++.= ...+++. .|
T Consensus 306 ~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~ 384 (498)
T KOG4237|consen 306 TRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQS 384 (498)
T ss_pred CcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCC
Confidence 777664 5566666677777777777777766666666666677777665544320 0011111 11
Q ss_pred -CCCcEEEccccccccc---cCC----------CcccCCcceE-eccCCcCCCCCCccccCCCCccEeeCCCCccccccC
Q 036588 425 -TKLEKLDLQYNRLQGT---IPY----------AGHLFQLQWL-DLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELP 489 (541)
Q Consensus 425 -~~L~~L~l~~~~~~~~---~~~----------~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 489 (541)
..++.+.++...+... .+. -..++.+..+ ..+..... .+|..+ ...-.++.+.+|.+ ..+|
T Consensus 385 p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~i--P~d~telyl~gn~~-~~vp 460 (498)
T KOG4237|consen 385 PGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGI--PVDVTELYLDGNAI-TSVP 460 (498)
T ss_pred CchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCC--CchhHHHhcccchh-cccC
Confidence 1233333433322110 000 0111112111 11111111 222211 12345677888887 5577
Q ss_pred cccccCCcccceeeeccceecccCCCCCCCccccceEEeecc
Q 036588 490 TNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFN 531 (541)
Q Consensus 490 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 531 (541)
.+ .+.+| .+++++|++..-....|.++..|.+|-|++|
T Consensus 461 ~~---~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 461 DE---LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred HH---HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 54 45677 8889999988556667888888888888764
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-16 Score=158.88 Aligned_cols=260 Identities=29% Similarity=0.257 Sum_probs=119.3
Q ss_pred CCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEec
Q 036588 210 LQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLR 289 (541)
Q Consensus 210 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 289 (541)
-..|+++.+.+. .+|..+. ++|+.|.+.+|.+. .+|. ..++|+.|++++|+++. +|.. .++|+.|++.
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls 270 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIF 270 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCc-ccCc---ccccceeecc
Confidence 455666666665 3444332 35666666666653 2332 23556666666665552 2221 2455556665
Q ss_pred ccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCC
Q 036588 290 FNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELP 369 (541)
Q Consensus 290 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 369 (541)
+|.+.. ++. ..++|+.|++++|.+..... ..++|+.|++++|.+.. ++.. ..+|+.|.+++|.++ .++
T Consensus 271 ~N~L~~-Lp~---lp~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP 338 (788)
T PRK15387 271 SNPLTH-LPA---LPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLP 338 (788)
T ss_pred CCchhh-hhh---chhhcCEEECcCCccccccc---cccccceeECCCCcccc-CCCC---cccccccccccCccc-ccc
Confidence 555442 221 12345555555555442211 12345555555554442 1111 123444444444443 222
Q ss_pred hhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCC
Q 036588 370 TNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQ 449 (541)
Q Consensus 370 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 449 (541)
. -. .+|+.|++++|++... |.. .++|+.|++++|++... +. ...+
T Consensus 339 ~----lp------------------------~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~~L-P~--l~~~ 383 (788)
T PRK15387 339 T----LP------------------------SGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLTSL-PA--LPSG 383 (788)
T ss_pred c----cc------------------------cccceEecCCCccCCC-CCC---CcccceehhhccccccC-cc--cccc
Confidence 1 11 2445555555544421 111 13444455555544421 11 1234
Q ss_pred cceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEee
Q 036588 450 LQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQ 529 (541)
Q Consensus 450 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 529 (541)
|+.|++++|.+. .+|.. .++|+.|++++|.+. .+|. . ..+|+.|++++|.+. .+|+.+..+++|+.|+++
T Consensus 384 L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~-l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 384 LKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPM-L---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 453 (788)
T ss_pred cceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCc-c---hhhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence 555555555554 22221 234555555555552 2441 1 234555555555555 455555555555556666
Q ss_pred cccccccCC
Q 036588 530 FNNFSGAIP 538 (541)
Q Consensus 530 ~~~~~~~~p 538 (541)
+|++++.+|
T Consensus 454 ~N~Ls~~~~ 462 (788)
T PRK15387 454 GNPLSERTL 462 (788)
T ss_pred CCCCCchHH
Confidence 555555443
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-15 Score=154.29 Aligned_cols=255 Identities=27% Similarity=0.263 Sum_probs=125.3
Q ss_pred CeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeec
Q 036588 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFL 101 (541)
Q Consensus 22 ~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 101 (541)
.-..|++++++++ .+|..+. ++|+.|++.+|.++ .+|.. .++|++|++++|.+ +.+|.. .++|+.|++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~L-tsLP~l----p~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQL-TSLPVL----PPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCcc-CcccCc----ccccceeec
Confidence 3456788888888 5676664 47888888888887 56643 57888888888877 355542 567888888
Q ss_pred cccccCccCCccCCCCCCCcEEecCCCcccccc-ccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCcc
Q 036588 102 KSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDH-TKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKE 180 (541)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 180 (541)
++|.+. .+|..+ .+|+.|++++|.+.... .+++|+.|++++|.+... +.. ..+|+.|.+.+|.+. .+|..
T Consensus 270 s~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~-~LP~l 340 (788)
T PRK15387 270 FSNPLT-HLPALP---SGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLT-SLPTL 340 (788)
T ss_pred cCCchh-hhhhch---hhcCEEECcCCccccccccccccceeECCCCccccC-CCC---cccccccccccCccc-ccccc
Confidence 887776 333322 34555555555544222 123455555555544432 211 123444444444443 22211
Q ss_pred ccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCc
Q 036588 181 ISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLE 260 (541)
Q Consensus 181 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 260 (541)
..+|+.|++++|.+...+.. .++|+.|++++|.+. .+|.. ..+|+.|++++|.+. .++. ..++|+
T Consensus 341 ---p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~----l~s~L~ 405 (788)
T PRK15387 341 ---PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPV----LPSELK 405 (788)
T ss_pred ---ccccceEecCCCccCCCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCccc-CCCC----cccCCC
Confidence 12444555555444432211 233444444444443 22221 133444444444442 1221 113444
Q ss_pred EEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCcc
Q 036588 261 ELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRL 317 (541)
Q Consensus 261 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 317 (541)
.|++++|.+.. +|.. ..+|+.|++++|.+. .+|..+..+++|+.+++++|.+
T Consensus 406 ~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 406 ELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred EEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCC
Confidence 44444444432 2211 123444444444443 2333344444444444444443
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-17 Score=131.83 Aligned_cols=162 Identities=32% Similarity=0.457 Sum_probs=113.4
Q ss_pred CCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEe
Q 036588 20 TYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESL 99 (541)
Q Consensus 20 ~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 99 (541)
..+++.|.+++++++ ..|..++.+.+|++|++++|+++ .+|.++..+++|+.|+++-|+. ..+|.+|+. +|.|++|
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl-~~lprgfgs-~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL-NILPRGFGS-FPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh-hcCccccCC-Cchhhhh
Confidence 446667777777777 45555777777777777777776 7777777777777777776666 466777776 7777777
Q ss_pred eccccccCc-cCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCC
Q 036588 100 FLKSNMFHG-KIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIP 178 (541)
Q Consensus 100 ~l~~~~~~~-~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 178 (541)
|++.+.+.. .+|..|..++.|+.+.+ +.+.++ .+|..++++++|+.|.+..+.+. ..|
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl-------------------~dndfe-~lp~dvg~lt~lqil~lrdndll-~lp 166 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYL-------------------GDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLP 166 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHh-------------------cCCCcc-cCChhhhhhcceeEEeeccCchh-hCc
Confidence 777666552 45666666666666444 344443 56777888888888888887766 677
Q ss_pred ccccccCCCcEEEccCceeeeeccCCCC
Q 036588 179 KEISNLTKLEKLDLQYNKLQGTIPYAGH 206 (541)
Q Consensus 179 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 206 (541)
..++.++.|++|.+.++.++..++.++.
T Consensus 167 keig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 167 KEIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred HHHHHHHHHHHHhcccceeeecChhhhh
Confidence 8888888888888888887766665543
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-17 Score=157.28 Aligned_cols=202 Identities=24% Similarity=0.239 Sum_probs=93.0
Q ss_pred EEecCCcce-eeeCCcccCCCCCcEecccccccCCc----cchhhhhcCCCcEEEeecCccCC------CCChhhhhhcC
Q 036588 26 LNISGLNLT-VTIPSELGNLSSLQTLDLSFNWFSGS----IPASIFNMSSLLSINFINNALFG------ELPPNFCNHLS 94 (541)
Q Consensus 26 L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~------~~~~~~~~~l~ 94 (541)
|+|..+.++ ......|..+++|+.|+++++.++.. ++..+...+.|+++++.++.+.. .++..+.. ++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~-~~ 81 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK-GC 81 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh-cC
Confidence 455555555 23344455666677777777766422 34444555667777776665421 11122223 55
Q ss_pred CCcEeeccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccc----cCCccccCC-CCccEEEec
Q 036588 95 NLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYG----EIPSDIANC-SYLRILVLQ 169 (541)
Q Consensus 95 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~-~~L~~L~l~ 169 (541)
+|+.|+++++.+....+..+..+.+ . ++|++|++++|.+.+ .+...+..+ ++|+.|++.
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~---------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~ 145 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLR---------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLG 145 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhc---------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcC
Confidence 6666666666655333333322222 0 123334444443331 111223344 566666666
Q ss_pred cCcccc----cCCccccccCCCcEEEccCceeeee-----ccCCCCcCCCCEEECCCCcccCC----CCcccCCCCCccE
Q 036588 170 FNNFSG----AIPKEISNLTKLEKLDLQYNKLQGT-----IPYAGHLYQLQWLDLSDNQLSGS----LPSFKFKMPLLQF 236 (541)
Q Consensus 170 ~~~i~~----~~~~~l~~l~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~ 236 (541)
+|.+.. .+...+..++.|++|++++|.+.+. ...+...++|+.|++++|.+.+. +...+..+++|++
T Consensus 146 ~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~ 225 (319)
T cd00116 146 RNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEV 225 (319)
T ss_pred CCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCE
Confidence 665542 1222334445555665555554421 11122334555555555544321 1122333444555
Q ss_pred EeccCCcc
Q 036588 237 LDLSSNRL 244 (541)
Q Consensus 237 L~l~~~~~ 244 (541)
|++++|.+
T Consensus 226 L~ls~n~l 233 (319)
T cd00116 226 LNLGDNNL 233 (319)
T ss_pred EecCCCcC
Confidence 55555444
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6e-15 Score=150.48 Aligned_cols=254 Identities=24% Similarity=0.366 Sum_probs=153.2
Q ss_pred ceeeeCCCCCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhh
Q 036588 12 TGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCN 91 (541)
Q Consensus 12 ~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 91 (541)
....|.. .+..+|++++++++ .+|..+. ++|+.|++++|.++ .+|..+. .+|++|++++|.+ +.+|..+
T Consensus 171 r~~~Cl~--~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~L-tsLP~~l-- 239 (754)
T PRK15370 171 RMRDCLK--NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQL-TSIPATL-- 239 (754)
T ss_pred HHHhhcc--cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcc-ccCChhh--
Confidence 3345653 36789999999999 4676553 57999999999998 7777664 5899999999987 5778765
Q ss_pred hcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccC
Q 036588 92 HLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFN 171 (541)
Q Consensus 92 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 171 (541)
.++|+.|++++|.+. .+|..+. .+|+.|+++++ ++.. +|..+. ++|+.|++++|
T Consensus 240 -~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N-------------------~L~~-LP~~l~--~sL~~L~Ls~N 293 (754)
T PRK15370 240 -PDTIQEMELSINRIT-ELPERLP--SALQSLDLFHN-------------------KISC-LPENLP--EELRYLSVYDN 293 (754)
T ss_pred -hccccEEECcCCccC-cCChhHh--CCCCEEECcCC-------------------ccCc-cccccC--CCCcEEECCCC
Confidence 457999999999887 5555443 35666555544 4442 232221 35666666666
Q ss_pred cccccCCccccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChh
Q 036588 172 NFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTN 251 (541)
Q Consensus 172 ~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 251 (541)
.+. .+|..+. ++|+.|++++|.+...+..+ .++|+.|++++|.+.. +|..+ .++|+.|++++|.+. .+|..
T Consensus 294 ~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~ 364 (754)
T PRK15370 294 SIR-TLPAHLP--SGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPET 364 (754)
T ss_pred ccc-cCcccch--hhHHHHHhcCCccccCCccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChh
Confidence 554 2333222 35566666666555332222 2456666666666552 33322 256666666666653 34433
Q ss_pred hhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCcccc----ccccCCccEEEeeCCccc
Q 036588 252 VFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKE----ISNLTKLEKLDLQYNRLQ 318 (541)
Q Consensus 252 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~~ 318 (541)
+ .++|+.|++++|.+. ..|..+. +.|+.|++++|.+. .+|.. ...++++..+++.+|.+.
T Consensus 365 l---p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 365 L---PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred h---cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 2 246666777666665 2333322 34666677776665 33322 233466677777777654
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.9e-15 Score=149.62 Aligned_cols=247 Identities=23% Similarity=0.306 Sum_probs=125.3
Q ss_pred CccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEe
Q 036588 233 LLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDL 312 (541)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 312 (541)
+.+.|.+++..+. .+|..+ .+.++.|++.+|.++ .+|..+. ++|+.|++++|.+. .++..+. ++|+.|++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACI---PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 4566777666553 344322 245777777777665 3333332 46777777777665 3333332 35677777
Q ss_pred eCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccC
Q 036588 313 QYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGE 392 (541)
Q Consensus 313 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 392 (541)
++|.+......+ ..+|+.|++++|.+.. ++..+ .++|+.|++++|.++ .++... .++|+.|++.+|.+. .
T Consensus 249 s~N~L~~LP~~l--~s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l---p~sL~~L~Ls~N~Lt-~ 318 (754)
T PRK15370 249 SINRITELPERL--PSALQSLDLFHNKISC-LPENL--PEELRYLSVYDNSIR-TLPAHL---PSGITHLNVQSNSLT-A 318 (754)
T ss_pred cCCccCcCChhH--hCCCCEEECcCCccCc-ccccc--CCCCcEEECCCCccc-cCcccc---hhhHHHHHhcCCccc-c
Confidence 777665332222 2356666666666552 23222 245666666666654 333321 134666666666554 2
Q ss_pred CCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCC
Q 036588 393 IPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMP 472 (541)
Q Consensus 393 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 472 (541)
++..+ .++|+.|++++|.++. .|..+. ++|+.|++++|++......+ .++|+.|++++|.+. .+|..+. +
T Consensus 319 LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~ 388 (754)
T PRK15370 319 LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALT-NLPENLP--A 388 (754)
T ss_pred CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCC-CCCHhHH--H
Confidence 22211 2456666666665553 233332 45666666666554221111 245666666666555 2333222 2
Q ss_pred CccEeeCCCCccccccCcc---cccCCcccceeeeccceec
Q 036588 473 LLQFLDLSSNRLSTELPTN---VFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 473 ~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~ 510 (541)
.|+.|++++|++. .+|.. ....++.+..+++.+|++.
T Consensus 389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 4566666666552 33321 1122355556666666654
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-16 Score=151.92 Aligned_cols=157 Identities=27% Similarity=0.282 Sum_probs=85.3
Q ss_pred CcceEEEcccCcCcCcCC---hhhhcCCCCccEEEccCcccccC----CCcCCcCCccCCeEEcccCCCCCcc----chh
Q 036588 352 PLLQFLDLSSNRLSVELP---TNVFHNLPFLEELYLSNNMFYGE----IPSDTQNCSYLRILVLKFNNFPGAI----PKE 420 (541)
Q Consensus 352 ~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~ 420 (541)
++|+.+++++|.+++... ...+..+++|++|++.+|.+.+. +...+..+++|+.|++++|.+.... ...
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 445555555554432111 12233445566666666555421 1122334456677777666655322 223
Q ss_pred hhccCCCcEEEccccccccccCC--Cc----ccCCcceEeccCCcCCC----CCCccccCCCCccEeeCCCCccccc---
Q 036588 421 ISNLTKLEKLDLQYNRLQGTIPY--AG----HLFQLQWLDLSDNQLSG----SLPSFKFKMPLLQFLDLSSNRLSTE--- 487 (541)
Q Consensus 421 l~~~~~L~~L~l~~~~~~~~~~~--~~----~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~--- 487 (541)
+..+++|+.|++++|.+.+.... .. ..+.|+.|++++|.+++ .+...+..+++|+++++++|.+...
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~ 296 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ 296 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence 44566777777777766531111 11 23678888888887753 2233455667888888888888533
Q ss_pred -cCcccccCC-cccceeeecccee
Q 036588 488 -LPTNVFHNL-PFLEELYLSNNMF 509 (541)
Q Consensus 488 -~~~~~~~~~-~~L~~L~l~~~~~ 509 (541)
+. ..+... +.|+.+++.++++
T Consensus 297 ~~~-~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 297 LLA-ESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHH-HHHhhcCCchhhcccCCCCC
Confidence 22 223333 6788888877763
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3e-16 Score=123.56 Aligned_cols=157 Identities=29% Similarity=0.435 Sum_probs=122.2
Q ss_pred ccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCC
Q 036588 41 LGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRL 120 (541)
Q Consensus 41 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 120 (541)
+-++.+++.|.++.|+++ .+|..+..+.+|+.|++.+|++ ..+|.++.. +++|++|++..+++. ..|..|+.++.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqi-e~lp~~iss-l~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQI-EELPTSISS-LPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchh-hhcChhhhh-chhhhheecchhhhh-cCccccCCCchh
Confidence 456677888899999998 8888899999999999999998 688888888 999999999888776 778888887777
Q ss_pred cEEecCCCccccccccCcceEEEecCcccc-ccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceeee
Q 036588 121 RETSLSLNDFFWDHTKRNWQQLYLSKNMFY-GEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQG 199 (541)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~ 199 (541)
+.+++.+ +.+. ..+|..|-.+..|+.|.+..+.+. .+|..++++++|+.|.+..+.+..
T Consensus 105 evldlty-------------------nnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~ 164 (264)
T KOG0617|consen 105 EVLDLTY-------------------NNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS 164 (264)
T ss_pred hhhhccc-------------------cccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh
Confidence 7744443 3322 345666777777777888777766 677778888888888887777776
Q ss_pred eccCCCCcCCCCEEECCCCccc
Q 036588 200 TIPYAGHLYQLQWLDLSDNQLS 221 (541)
Q Consensus 200 ~~~~~~~~~~L~~L~l~~~~~~ 221 (541)
.+..++.+..|+.|.+.+++++
T Consensus 165 lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 165 LPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred CcHHHHHHHHHHHHhcccceee
Confidence 6666777777777777777766
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.9e-11 Score=125.81 Aligned_cols=102 Identities=21% Similarity=0.226 Sum_probs=52.5
Q ss_pred CeEEEEecCCcceeeeCCcccCCCCCcEecccccc--cCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEe
Q 036588 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNW--FSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESL 99 (541)
Q Consensus 22 ~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 99 (541)
.+|...+.++.+. ..+.+.. +++|++|-+..+. +....+..|..++.|++|++++|.-.+.+|..+++ +-+||+|
T Consensus 524 ~~rr~s~~~~~~~-~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~LryL 600 (889)
T KOG4658|consen 524 SVRRMSLMNNKIE-HIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE-LVHLRYL 600 (889)
T ss_pred heeEEEEeccchh-hccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh-hhhhhcc
Confidence 4455555555544 2232222 2245555555553 22122222445666666666655555566666665 6666666
Q ss_pred eccccccCccCCccCCCCCCCcEEecCC
Q 036588 100 FLKSNMFHGKIPSTLSSCKRLRETSLSL 127 (541)
Q Consensus 100 ~l~~~~~~~~~~~~~~~l~~L~~l~~~~ 127 (541)
+++++.+. .+|..+.+++.|.+|++..
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~ 627 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEV 627 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheecccc
Confidence 66666555 5566666666666654443
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.6e-12 Score=113.52 Aligned_cols=88 Identities=24% Similarity=0.121 Sum_probs=45.4
Q ss_pred CcCcccccEEEecccccCCC----ccccccccCCccEEEeeCCccccc-----------cccccccCCCcEEeccCcccc
Q 036588 277 TANCSYLRILVLRFNNFSGA----IPKEISNLTKLEKLDLQYNRLQGT-----------ILYVGHLLQLQWLDLSDNQLS 341 (541)
Q Consensus 277 ~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~-----------~~~~~~~~~L~~L~l~~~~~~ 341 (541)
+.....++++++++|.+... +...+.+.++|+..++++...... ...+..+|.|+++++++|-+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 34456677788887765422 334455666777777665432211 111344556666666665443
Q ss_pred CCC----CcccCCCCcceEEEcccCcC
Q 036588 342 GSL----PSFKFNMPLLQFLDLSSNRL 364 (541)
Q Consensus 342 ~~~----~~~~~~~~~L~~L~l~~~~~ 364 (541)
... ...+.++..|++|.+.+|.+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Gl 132 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGL 132 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCC
Confidence 211 12223455555555555544
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-11 Score=106.67 Aligned_cols=131 Identities=27% Similarity=0.266 Sum_probs=75.8
Q ss_pred cCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEe
Q 036588 398 QNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFL 477 (541)
Q Consensus 398 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 477 (541)
...+.|+++|+++|.++. ..+.+.-.|.++.|+++.|.+.. +..+..+++|..|++++|.+. .+..+-.++.+.++|
T Consensus 281 dTWq~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~-v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRT-VQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred chHhhhhhccccccchhh-hhhhhhhccceeEEeccccceee-ehhhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 334556666666665552 33344445666666666666552 233555666666666666555 333444456666777
Q ss_pred eCCCCccccccCcccccCCcccceeeeccceeccc-CCCCCCCccccceEEeeccccc
Q 036588 478 DLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGE-IPSDTPNCSYLRILVVQFNNFS 534 (541)
Q Consensus 478 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~ 534 (541)
.+++|.+ +.+ ..+..+.+|..||+++|+|... -..++.++|.|+.+.+.+|++.
T Consensus 358 ~La~N~i-E~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 358 KLAQNKI-ETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred ehhhhhH-hhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 7777666 223 2455566677777777766522 2235666777777777777765
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-10 Score=118.68 Aligned_cols=118 Identities=26% Similarity=0.495 Sum_probs=102.5
Q ss_pred ccceeeeCCC--C--CCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCC
Q 036588 10 NWTGITCDVR--T--YRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGEL 85 (541)
Q Consensus 10 ~~~~~~~~~~--~--~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 85 (541)
.|.|+.|... . ..++.|+|+++.+++.+|..++++++|+.|+|++|.+.+.+|..+..+++|++|++++|.+.+.+
T Consensus 403 ~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i 482 (623)
T PLN03150 403 PWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482 (623)
T ss_pred ccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC
Confidence 7999999531 1 25999999999999999999999999999999999999999999999999999999999998899
Q ss_pred ChhhhhhcCCCcEeeccccccCccCCccCCCC-CCCcEEecCCC
Q 036588 86 PPNFCNHLSNLESLFLKSNMFHGKIPSTLSSC-KRLRETSLSLN 128 (541)
Q Consensus 86 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~l~~~~~ 128 (541)
|..+.. +++|++|++++|.+...+|..+... .++..+++.++
T Consensus 483 P~~l~~-L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 483 PESLGQ-LTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred chHHhc-CCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence 998887 9999999999999998888887653 34455444433
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.2e-12 Score=115.46 Aligned_cols=207 Identities=24% Similarity=0.218 Sum_probs=129.5
Q ss_pred cCcccccEEEecccccCCCcc-ccccccCCccEEEeeCCcccccccc---ccccCCCcEEeccCccccCCCCcc-cCCCC
Q 036588 278 ANCSYLRILVLRFNNFSGAIP-KEISNLTKLEKLDLQYNRLQGTILY---VGHLLQLQWLDLSDNQLSGSLPSF-KFNMP 352 (541)
Q Consensus 278 ~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~ 352 (541)
.++.+|+.+.+.++.+..... .....|++++.|+++.|-+...... ...+|+|+.|+++.|.+....... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 356788999999887763322 4677899999999999876544332 577889999999988776322211 12467
Q ss_pred cceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCcc-chhhhccCCCcEEE
Q 036588 353 LLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAI-PKEISNLTKLEKLD 431 (541)
Q Consensus 353 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~ 431 (541)
.|+.|.++.|+++......+...+|+|+.|.+..|...........-++.|++|++++|.+.+.. ......++.|..|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 88888888888875555556667888888888877522222233445667777788777665422 12345567777777
Q ss_pred ccccccccccCC-------CcccCCcceEeccCCcCCC-CCCccccCCCCccEeeCCCCcc
Q 036588 432 LQYNRLQGTIPY-------AGHLFQLQWLDLSDNQLSG-SLPSFKFKMPLLQFLDLSSNRL 484 (541)
Q Consensus 432 l~~~~~~~~~~~-------~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~ 484 (541)
++.|.+....-. ...+++|+.|++..|++.+ .....+..+++|+.|.+..+.+
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 777766532111 1345666666666666542 1122344455555555555554
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.6e-12 Score=111.96 Aligned_cols=184 Identities=27% Similarity=0.319 Sum_probs=96.0
Q ss_pred ccccCCccEEEeeCCcccccccc-----ccccCCCcEEeccCccccCCCC-------------cccCCCCcceEEEcccC
Q 036588 301 ISNLTKLEKLDLQYNRLQGTILY-----VGHLLQLQWLDLSDNQLSGSLP-------------SFKFNMPLLQFLDLSSN 362 (541)
Q Consensus 301 l~~l~~L~~L~l~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~-------------~~~~~~~~L~~L~l~~~ 362 (541)
+..+++|+.+++|+|.+...... +.++..|++|++.+|.+..... ....+.+.|+.+....|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 33445555555555544322211 3445555555555555432111 12234567777777777
Q ss_pred cCcCc---CChhhhcCCCCccEEEccCcccccC----CCcCCcCCccCCeEEcccCCCCC----ccchhhhccCCCcEEE
Q 036588 363 RLSVE---LPTNVFHNLPFLEELYLSNNMFYGE----IPSDTQNCSYLRILVLKFNNFPG----AIPKEISNLTKLEKLD 431 (541)
Q Consensus 363 ~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~ 431 (541)
..... .....|+..+.|+.+.+..|.+... +...+..|++|+.|++++|.++. .....++.+++|++++
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 65321 1234566667777777777765422 22345667777777777776553 2233445566666666
Q ss_pred ccccccccccCC------CcccCCcceEeccCCcCCC----CCCccccCCCCccEeeCCCCcc
Q 036588 432 LQYNRLQGTIPY------AGHLFQLQWLDLSDNQLSG----SLPSFKFKMPLLQFLDLSSNRL 484 (541)
Q Consensus 432 l~~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~ 484 (541)
+++|-+...... -...|.|+++.+.+|.++. .+.......|.|+.|++++|.+
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 666655432211 1235566666666665543 1122233455666666666655
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.2e-11 Score=110.81 Aligned_cols=208 Identities=26% Similarity=0.210 Sum_probs=152.3
Q ss_pred ccCCCCcEEEecCccccccCC-CCCcCcccccEEEecccccCCC--ccccccccCCccEEEeeCCcccccccc--ccccC
Q 036588 254 HNLPFLEELYLSNNMFYGEIP-SDTANCSYLRILVLRFNNFSGA--IPKEISNLTKLEKLDLQYNRLQGTILY--VGHLL 328 (541)
Q Consensus 254 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~ 328 (541)
+++.+|+++.+.++.+..... .....|++++.|++++|-+... .......+|+|+.|+++.|.+...... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 567789999999988763322 3567899999999999877643 345667899999999999987644333 34678
Q ss_pred CCcEEeccCccccC-CCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCC-CcCCcCCccCCeE
Q 036588 329 QLQWLDLSDNQLSG-SLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEI-PSDTQNCSYLRIL 406 (541)
Q Consensus 329 ~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L 406 (541)
+++.|.++.|.++. .+......+|+|+.|.+.+|... .+......-+..|+.|++++|++.... ......+|.|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 99999999998873 33344567899999999998521 233333445788999999999875322 1345678999999
Q ss_pred EcccCCCCCcc-chh-----hhccCCCcEEEcccccccc--ccCCCcccCCcceEeccCCcCCC
Q 036588 407 VLKFNNFPGAI-PKE-----ISNLTKLEKLDLQYNRLQG--TIPYAGHLFQLQWLDLSDNQLSG 462 (541)
Q Consensus 407 ~l~~~~~~~~~-~~~-----l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~ 462 (541)
.++.|.+..+. +.. ...+++|+.|++..|++.. ....+..+++|+.|.+.++.+..
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 99999876532 222 3567999999999999853 33346778888888888887754
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.4e-11 Score=123.88 Aligned_cols=293 Identities=20% Similarity=0.182 Sum_probs=165.9
Q ss_pred eCCCCCCeEEEEecCCc--ceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhc
Q 036588 16 CDVRTYRVTALNISGLN--LTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHL 93 (541)
Q Consensus 16 ~~~~~~~l~~L~l~~~~--i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l 93 (541)
+....+.+++|-+..+. +.....+.|..++.|++||+++|.--+.+|..++++-+||||++.++.+ ..+|.++.+ +
T Consensus 540 ~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I-~~LP~~l~~-L 617 (889)
T KOG4658|consen 540 GSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI-SHLPSGLGN-L 617 (889)
T ss_pred CCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc-cccchHHHH-H
Confidence 33334468888877775 4434445578888888888888765558888888888888888888887 588888888 8
Q ss_pred CCCcEeeccccccCccCCccCCCCCCCcEEecCCCccc-------cccccCcceEEEecCccccccCCccccCCCCcc--
Q 036588 94 SNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFF-------WDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLR-- 164 (541)
Q Consensus 94 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~-------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-- 164 (541)
..|.+|++..+......+.....+.+|+++.+...... ....+++|+.+....... .+...+..++.|.
T Consensus 618 k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~ 695 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSL 695 (889)
T ss_pred HhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHH
Confidence 88888888877665556667777888888888665422 333445555555543332 1111222333332
Q ss_pred --EEEeccCcccccCCccccccCCCcEEEccCceeeeecc-C-----CC-CcCCCCEEECCCCcccCCCCcccCCCCCcc
Q 036588 165 --ILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIP-Y-----AG-HLYQLQWLDLSDNQLSGSLPSFKFKMPLLQ 235 (541)
Q Consensus 165 --~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~-----~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 235 (541)
.+.+.++.. ...+..+..+.+|+.|.+.++...+... . .. .++++..+.+.++... -.+.+....++|+
T Consensus 696 ~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~ 773 (889)
T KOG4658|consen 696 LQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLT 773 (889)
T ss_pred hHhhhhccccc-ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCccc
Confidence 233222222 2444556777888888888776643211 1 11 1344555555555433 3334445568888
Q ss_pred EEeccCCcccCcCChhhhccCCCCcEEEecCcccccc-CCCCCcCcccccEEEecccccCCCc---cccccccCCccEEE
Q 036588 236 FLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGE-IPSDTANCSYLRILVLRFNNFSGAI---PKEISNLTKLEKLD 311 (541)
Q Consensus 236 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~---~~~l~~l~~L~~L~ 311 (541)
.+.+..+...+... .....+..++.+.+..+.+... .....+.++++..+.+..-...+.. ...+..+|.+..+.
T Consensus 774 ~l~l~~~~~~e~~i-~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~ 852 (889)
T KOG4658|consen 774 SLSLVSCRLLEDII-PKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLT 852 (889)
T ss_pred EEEEecccccccCC-CHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccc
Confidence 88888876533222 2223334444433433333322 2233344444444444332221111 12245566666666
Q ss_pred eeCC
Q 036588 312 LQYN 315 (541)
Q Consensus 312 l~~~ 315 (541)
+.+|
T Consensus 853 i~~~ 856 (889)
T KOG4658|consen 853 IVGC 856 (889)
T ss_pred eecc
Confidence 6665
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.5e-11 Score=97.25 Aligned_cols=124 Identities=28% Similarity=0.273 Sum_probs=33.4
Q ss_pred CCCCccEEEccCcccccCCCcCCc-CCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCC-cccCCcce
Q 036588 375 NLPFLEELYLSNNMFYGEIPSDTQ-NCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQW 452 (541)
Q Consensus 375 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~ 452 (541)
++.++++|++.++.+... +.+. .+.+|+.|++++|.+... +.+..+++|++|++++|++......+ ..+++|++
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 344566666666666421 2233 355666666666666532 24555666666666666655432222 24556666
Q ss_pred EeccCCcCCCC-CCccccCCCCccEeeCCCCccccccCc---ccccCCcccceee
Q 036588 453 LDLSDNQLSGS-LPSFKFKMPLLQFLDLSSNRLSTELPT---NVFHNLPFLEELY 503 (541)
Q Consensus 453 L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~ 503 (541)
|++++|.+.+. ....+..+|+|+.|++.+|++... +. ..+..+|+|+.||
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEET
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeC
Confidence 66666655431 123344556666666666655332 11 1234455555554
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.1e-11 Score=103.16 Aligned_cols=183 Identities=27% Similarity=0.299 Sum_probs=138.0
Q ss_pred ccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcC---cCChh-------------------hhcCCCCccE
Q 036588 324 VGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSV---ELPTN-------------------VFHNLPFLEE 381 (541)
Q Consensus 324 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~-------------------~~~~~~~L~~ 381 (541)
+.-+.+|+++.++.|.-.. +......-|.|.++.+.+..+.. -.|+. ....+..|++
T Consensus 210 l~~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lte 288 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTE 288 (490)
T ss_pred hHHhhhhheeeeeccchhh-eeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhh
Confidence 5567889999999887553 22333345788888777654321 01111 1113456899
Q ss_pred EEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCC
Q 036588 382 LYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLS 461 (541)
Q Consensus 382 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 461 (541)
+++++|.+. .+.+...-.|.++.|+++.|.+... +.+..+++|..|++++|.+......-..+-+.+.|.+.+|.+.
T Consensus 289 lDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE 365 (490)
T KOG1259|consen 289 LDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIE 365 (490)
T ss_pred ccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHh
Confidence 999999886 5666778889999999999998744 3488899999999999998765555566788999999999875
Q ss_pred CCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceeccc
Q 036588 462 GSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGE 512 (541)
Q Consensus 462 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 512 (541)
+ .+.++++-+|..|++++|++...-....++++|.|+.+.+.+||+...
T Consensus 366 ~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 366 T--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred h--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 3 345778889999999999986554556789999999999999999843
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.7e-12 Score=115.12 Aligned_cols=249 Identities=20% Similarity=0.109 Sum_probs=124.3
Q ss_pred cccccEEEecccc-cCCCccc-cccccCCccEEEeeCCccccc---cccccccCCCcEEeccCccccC--CCCcccCCCC
Q 036588 280 CSYLRILVLRFNN-FSGAIPK-EISNLTKLEKLDLQYNRLQGT---ILYVGHLLQLQWLDLSDNQLSG--SLPSFKFNMP 352 (541)
Q Consensus 280 ~~~L~~L~l~~~~-~~~~~~~-~l~~l~~L~~L~l~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~ 352 (541)
|++|+++++..|. +++.... ....|++|+++++++|..... ......+..++.+...+|.-.. .+......++
T Consensus 189 C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~ 268 (483)
T KOG4341|consen 189 CRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCL 268 (483)
T ss_pred cchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccCh
Confidence 4445555554432 2222222 223455666666655543211 1113334444444444443211 1111222344
Q ss_pred cceEEEcccCc-CcCcCChhhhcCCCCccEEEccCcccccC--CCcCCcCCccCCeEEcccCC-CCCccchhhh-ccCCC
Q 036588 353 LLQFLDLSSNR-LSVELPTNVFHNLPFLEELYLSNNMFYGE--IPSDTQNCSYLRILVLKFNN-FPGAIPKEIS-NLTKL 427 (541)
Q Consensus 353 ~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~-~~~~L 427 (541)
.+.++++..|. +++.....+...+..|+.+..++|...+. +....+++++|+.+.+..|+ +++.....++ +++.|
T Consensus 269 ~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~L 348 (483)
T KOG4341|consen 269 EILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHL 348 (483)
T ss_pred HhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhh
Confidence 45555554542 34333334444566677777766653221 11223466777777777764 3333333343 46777
Q ss_pred cEEEcccccccccc---CCCcccCCcceEeccCCc-CCCCC----CccccCCCCccEeeCCCCccccccCcccccCCccc
Q 036588 428 EKLDLQYNRLQGTI---PYAGHLFQLQWLDLSDNQ-LSGSL----PSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFL 499 (541)
Q Consensus 428 ~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~-~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 499 (541)
+.+++.+|...... .....++.|+++.+++|. +++.. ......+..|+.+.+++|+....-..+.+..+++|
T Consensus 349 e~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~L 428 (483)
T KOG4341|consen 349 ERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNL 428 (483)
T ss_pred hhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccc
Confidence 77777777654332 224567777777777773 33321 12223456677777777777555444556667777
Q ss_pred ceeeeccceec-cc-CCCCCCCccccceEEe
Q 036588 500 EELYLSNNMFY-GE-IPSDTPNCSYLRILVV 528 (541)
Q Consensus 500 ~~L~l~~~~~~-~~-~~~~~~~~~~L~~L~l 528 (541)
+.+++.+|.-- .. +..--.++|++++..+
T Consensus 429 eri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 429 ERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred ceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 77777777632 22 2222335666665544
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.3e-10 Score=92.00 Aligned_cols=106 Identities=28% Similarity=0.431 Sum_probs=38.7
Q ss_pred CCCeEEEEecCCcceeeeCCccc-CCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcE
Q 036588 20 TYRVTALNISGLNLTVTIPSELG-NLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLES 98 (541)
Q Consensus 20 ~~~l~~L~l~~~~i~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 98 (541)
..++|+|+++++.|+. + +.++ .+.+|+.|++++|.++ .+. .+..+++|++|++++|.+ +.+...+...+|+|++
T Consensus 18 ~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I-~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRI-SSISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred cccccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCC-CccccchHHhCCcCCE
Confidence 3468999999999994 3 3465 5899999999999998 443 577899999999999999 4565556555999999
Q ss_pred eeccccccCccC-CccCCCCCCCcEEecCCCcc
Q 036588 99 LFLKSNMFHGKI-PSTLSSCKRLRETSLSLNDF 130 (541)
Q Consensus 99 L~l~~~~~~~~~-~~~~~~l~~L~~l~~~~~~~ 130 (541)
|++++|++.+.. ...+..+++|++|++.+|++
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 999999987432 23445666666655555554
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1e-10 Score=110.09 Aligned_cols=170 Identities=26% Similarity=0.410 Sum_probs=116.2
Q ss_pred EEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccc
Q 036588 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKS 103 (541)
Q Consensus 24 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 103 (541)
...|++.+.+. .+|..+..|..|..+.+..|.+. .+|..+.++..|.+++++.|++ ..+|..++. --|++|-+++
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~--lpLkvli~sN 152 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQL-SHLPDGLCD--LPLKVLIVSN 152 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchh-hcCChhhhc--CcceeEEEec
Confidence 34567777777 78888888888888888888887 8888899999999999999888 577888774 4588888888
Q ss_pred cccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccc
Q 036588 104 NMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISN 183 (541)
Q Consensus 104 ~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~ 183 (541)
|+++ .+|..++....|.+++++.|++. .++..+.++.+|+.|++..|.+. .+|..++.
T Consensus 153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~--------------------slpsql~~l~slr~l~vrRn~l~-~lp~El~~ 210 (722)
T KOG0532|consen 153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQ--------------------SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS 210 (722)
T ss_pred Cccc-cCCcccccchhHHHhhhhhhhhh--------------------hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC
Confidence 8887 78888887777888666665543 23344455555555555555544 34444442
Q ss_pred cCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCccc
Q 036588 184 LTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLS 221 (541)
Q Consensus 184 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 221 (541)
-.|.+|+++.|.+..++..+.++++|++|.+++|.+.
T Consensus 211 -LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 211 -LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred -CceeeeecccCceeecchhhhhhhhheeeeeccCCCC
Confidence 2455555555555544444555555555555555554
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.85 E-value=9e-11 Score=110.47 Aligned_cols=175 Identities=31% Similarity=0.379 Sum_probs=134.7
Q ss_pred eEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccc
Q 036588 355 QFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQY 434 (541)
Q Consensus 355 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 434 (541)
...+++.|.+. .++.... .+..|+.+.+..|.+- .++..+..+..|.+++++.|+++ ..|..+..|+ |+.|.+++
T Consensus 78 ~~aDlsrNR~~-elp~~~~-~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEAC-AFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhccccccc-cCchHHH-HHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence 34455666654 5555443 5667777777776664 66777888888888899888887 4566666665 88888999
Q ss_pred cccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCC
Q 036588 435 NRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIP 514 (541)
Q Consensus 435 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 514 (541)
|+++.....++..++|..|+.+.|.+. .++..++++.+|+.|.++.|.+.. +|.+.. .-.|..||++.|++. .+|
T Consensus 153 Nkl~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~--~LpLi~lDfScNkis-~iP 227 (722)
T KOG0532|consen 153 NKLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELC--SLPLIRLDFSCNKIS-YLP 227 (722)
T ss_pred CccccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHh--CCceeeeecccCcee-ecc
Confidence 998876666788888999999999887 778888889999999999998844 664433 446888999999998 889
Q ss_pred CCCCCccccceEEeecccccccCCCC
Q 036588 515 SDTPNCSYLRILVVQFNNFSGAIPKE 540 (541)
Q Consensus 515 ~~~~~~~~L~~L~l~~~~~~~~~p~~ 540 (541)
..|..++.|++|-|.+|++. +.|+.
T Consensus 228 v~fr~m~~Lq~l~LenNPLq-SPPAq 252 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQ-SPPAQ 252 (722)
T ss_pred hhhhhhhhheeeeeccCCCC-CChHH
Confidence 99999999999999999985 77754
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.4e-09 Score=72.13 Aligned_cols=61 Identities=33% Similarity=0.445 Sum_probs=52.3
Q ss_pred CCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCcc
Q 036588 21 YRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNAL 81 (541)
Q Consensus 21 ~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (541)
++|++|++++|+++...+++|..+++|++|++++|.++...+..|.++++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4788999999999977778899999999999999999866677888889999998888764
|
... |
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.9e-11 Score=103.77 Aligned_cols=208 Identities=19% Similarity=0.198 Sum_probs=119.1
Q ss_pred CccccceeeeCCCCCCeEEEEecCCcceeeeCCcccCC--CCCcEecccccccCCc-cchhhhhc-CCCcEEEeecCccC
Q 036588 7 SVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNL--SSLQTLDLSFNWFSGS-IPASIFNM-SSLLSINFINNALF 82 (541)
Q Consensus 7 ~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~l--~~L~~L~l~~~~~~~~-~~~~~~~l-~~L~~L~l~~~~~~ 82 (541)
+|..|.+..-++ .....+|+.+-+|. |++...+ ....++-+........ +...+.-+ ..|+++|+++..+.
T Consensus 124 VC~Rfyr~~~de--~lW~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it 198 (419)
T KOG2120|consen 124 VCKRFYRLASDE--SLWQTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVIT 198 (419)
T ss_pred HHHHHhhccccc--cceeeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhhee
Confidence 445777776554 47888999998887 6665555 3334444433322211 11122212 36999999998887
Q ss_pred CCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCccc-------cccccCcceEEEecCccccccCCc
Q 036588 83 GELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFF-------WDHTKRNWQQLYLSKNMFYGEIPS 155 (541)
Q Consensus 83 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~-------~~~~~~~L~~L~l~~~~~~~~~~~ 155 (541)
..-...+..+|.+|+.|.+.+.++.+-+...+.+-.+|+.++++.+.-. ....+..|..|++++|........
T Consensus 199 ~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vt 278 (419)
T KOG2120|consen 199 VSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVT 278 (419)
T ss_pred HHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhh
Confidence 6667788888999999999999998888888888888998888766432 344555666666666654432111
Q ss_pred -cccC-CCCccEEEeccCccc---ccCCccccccCCCcEEEccCceee-e-eccCCCCcCCCCEEECCCCc
Q 036588 156 -DIAN-CSYLRILVLQFNNFS---GAIPKEISNLTKLEKLDLQYNKLQ-G-TIPYAGHLYQLQWLDLSDNQ 219 (541)
Q Consensus 156 -~~~~-~~~L~~L~l~~~~i~---~~~~~~l~~l~~L~~L~l~~~~~~-~-~~~~~~~~~~L~~L~l~~~~ 219 (541)
.+.. -++|..|+++|+.-. ..+..--.++++|..|+++++..- . ....+..++.|++|.++.|.
T Consensus 279 v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 279 VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 1111 145555566554311 011111224455555555554221 1 11123445555555555554
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.4e-09 Score=71.58 Aligned_cols=61 Identities=48% Similarity=0.608 Sum_probs=51.8
Q ss_pred CCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeecccc
Q 036588 472 PLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNF 533 (541)
Q Consensus 472 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 533 (541)
|+|++|++++|++ ..++...|.++++|+.|++++|.+....++.|..+++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l-~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKL-TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTE-SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCC-CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5788899998888 557778888889999999999998877778889999999999998875
|
... |
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.4e-09 Score=100.79 Aligned_cols=195 Identities=35% Similarity=0.451 Sum_probs=89.4
Q ss_pred EEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCC-cceEEEcccCcCcCcCChhhhcCCCCccEEEccCc
Q 036588 309 KLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMP-LLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNN 387 (541)
Q Consensus 309 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 387 (541)
.+....+............+.++.+++.++.+.+ ++....... +|+.++++++.+. .++. ....++.|+.|++.+|
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~-~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPS-PLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhh-hhhccccccccccCCc
Confidence 4555555543333334444556666666665552 222333332 5566666655553 2221 1224555555555555
Q ss_pred ccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCcc
Q 036588 388 MFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSF 467 (541)
Q Consensus 388 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 467 (541)
++. .++......+.|+.++++++++... +........|+++.++++...........+.++..+.+.++.+. ..+..
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~~l-~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~ 250 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKISDL-PPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPES 250 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccccC-chhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccch
Confidence 554 2222222455555555555555422 22222233355555555543333333444444444444444443 12333
Q ss_pred ccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceeccc
Q 036588 468 KFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGE 512 (541)
Q Consensus 468 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 512 (541)
++.++++++|++++|.+ ..++. ++...+++.|+++++.+...
T Consensus 251 ~~~l~~l~~L~~s~n~i-~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 251 IGNLSNLETLDLSNNQI-SSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred hccccccceeccccccc-ccccc--ccccCccCEEeccCcccccc
Confidence 44444555555555555 22321 44445555555555555433
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.6e-09 Score=101.13 Aligned_cols=193 Identities=34% Similarity=0.393 Sum_probs=117.2
Q ss_pred EEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcC-CCcEEEeecCccCCCCChhhhhhcCCCcEeeccc
Q 036588 25 ALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMS-SLLSINFINNALFGELPPNFCNHLSNLESLFLKS 103 (541)
Q Consensus 25 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 103 (541)
.++...+.+. .....+..++.++.|++.++.++ .++....... +|+.|+++++.+ ..+|..+.. +++|+.|+++.
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~~-l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRN-LPNLKNLDLSF 172 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccch-hhhhhhhhc-cccccccccCC
Confidence 3556666654 23344555678888888888887 7777777674 888888888887 455555555 88888888888
Q ss_pred cccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccc
Q 036588 104 NMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISN 183 (541)
Q Consensus 104 ~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~ 183 (541)
|++. .++...+..++|+.+++++ +.+.+ ++.......+|+++.+.++.+. ..+..+.+
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~-------------------N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~ 230 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSG-------------------NKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSN 230 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccC-------------------Ccccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhh
Confidence 8887 4455554666666644444 44332 2222233444666666665322 33444555
Q ss_pred cCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCccc
Q 036588 184 LTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLS 245 (541)
Q Consensus 184 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 245 (541)
+..+..+.+.++.+......++.++.++.|+++++.+..... +....+++.++++++.+.
T Consensus 231 ~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 231 LKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cccccccccCCceeeeccchhccccccceecccccccccccc--ccccCccCEEeccCcccc
Confidence 566666666666555444455666666666666666653322 555666666666666554
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.5e-10 Score=105.00 Aligned_cols=256 Identities=18% Similarity=0.116 Sum_probs=171.9
Q ss_pred cCcccccEEEecccc-cCCCcc-ccccccCCccEEEeeCCcc-cccccc--ccccCCCcEEeccCccccC--CCCcccCC
Q 036588 278 ANCSYLRILVLRFNN-FSGAIP-KEISNLTKLEKLDLQYNRL-QGTILY--VGHLLQLQWLDLSDNQLSG--SLPSFKFN 350 (541)
Q Consensus 278 ~~~~~L~~L~l~~~~-~~~~~~-~~l~~l~~L~~L~l~~~~~-~~~~~~--~~~~~~L~~L~l~~~~~~~--~~~~~~~~ 350 (541)
..+|++++|.+.+|. +++... ..-..|++|+++++..|.. +..... ...|++|++++++-|.-.. .+...+.+
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 356777777776664 222222 2234689999999998643 322222 5678999999998886332 23344567
Q ss_pred CCcceEEEcccCcCc-CcCChhhhcCCCCccEEEccCcccccCC--CcCCcCCccCCeEEcccCC-CCCccchhhh-ccC
Q 036588 351 MPLLQFLDLSSNRLS-VELPTNVFHNLPFLEELYLSNNMFYGEI--PSDTQNCSYLRILVLKFNN-FPGAIPKEIS-NLT 425 (541)
Q Consensus 351 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~-~~~ 425 (541)
+..++++..+||.-. .......-..++-+.++++..|...... ...-.++..|+.++.++|. +++....++. ++.
T Consensus 241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~ 320 (483)
T KOG4341|consen 241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCH 320 (483)
T ss_pred chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCC
Confidence 778888888876521 1222333335666777777777533221 1223468889999998874 3444444554 589
Q ss_pred CCcEEEcccccccccc---CCCcccCCcceEeccCCcC-CC-CCCccccCCCCccEeeCCCCccccccCcccc----cCC
Q 036588 426 KLEKLDLQYNRLQGTI---PYAGHLFQLQWLDLSDNQL-SG-SLPSFKFKMPLLQFLDLSSNRLSTELPTNVF----HNL 496 (541)
Q Consensus 426 ~L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~-~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~~ 496 (541)
+|+.+.+++|+.-... ....+.+.|+.+++.++.. ++ .+...-.++|.|+.+.++.|...++.....+ ...
T Consensus 321 ~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~ 400 (483)
T KOG4341|consen 321 NLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSL 400 (483)
T ss_pred ceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccc
Confidence 9999999999854332 2256789999999999854 33 2444556899999999999987554322222 345
Q ss_pred cccceeeecccee-cccCCCCCCCccccceEEeecccc
Q 036588 497 PFLEELYLSNNMF-YGEIPSDTPNCSYLRILVVQFNNF 533 (541)
Q Consensus 497 ~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~ 533 (541)
..|+.+.+.+|+. ++...+.+..+++|+.+++-+|.-
T Consensus 401 ~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 401 EGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred cccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 6799999999995 467888999999999999998853
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.2e-09 Score=90.83 Aligned_cols=87 Identities=30% Similarity=0.357 Sum_probs=57.1
Q ss_pred ccCCccEEEeeCCccccccc---cccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCc
Q 036588 303 NLTKLEKLDLQYNRLQGTIL---YVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFL 379 (541)
Q Consensus 303 ~l~~L~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 379 (541)
.++.++.+++.+|.+..... -+.++|.|++|+++.|.+.+.+........+|+.|.+.+..+...-.......+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 35566666666666553322 256667777777777766654443334566888888888777655556667778888
Q ss_pred cEEEccCccc
Q 036588 380 EELYLSNNMF 389 (541)
Q Consensus 380 ~~L~l~~~~~ 389 (541)
++++++.|..
T Consensus 149 telHmS~N~~ 158 (418)
T KOG2982|consen 149 TELHMSDNSL 158 (418)
T ss_pred hhhhhccchh
Confidence 8888888743
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.6e-10 Score=97.24 Aligned_cols=177 Identities=23% Similarity=0.197 Sum_probs=98.1
Q ss_pred CccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccc-cCCCcc-ccccccCCccEE
Q 036588 233 LLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNN-FSGAIP-KEISNLTKLEKL 310 (541)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~-~~l~~l~~L~~L 310 (541)
.|++++++...+.......+++.|.+|+.|++++..+.+.....++...+|+.++++.+. +++... -.+.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466666666655444444556777777777777777766666666667777777777663 332211 235667778888
Q ss_pred EeeCCcccccccc---ccccCCCcEEeccCcccc---CCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEc
Q 036588 311 DLQYNRLQGTILY---VGHLLQLQWLDLSDNQLS---GSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYL 384 (541)
Q Consensus 311 ~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 384 (541)
++++|........ ..--++|+.|+++|+.-. +.+......||+|.+|+++++..........+..++.|+++.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 8887765433222 122346666777666421 1112223456666666666654211222233335666666666
Q ss_pred cCcccccCCCc---CCcCCccCCeEEcccC
Q 036588 385 SNNMFYGEIPS---DTQNCSYLRILVLKFN 411 (541)
Q Consensus 385 ~~~~~~~~~~~---~~~~~~~L~~L~l~~~ 411 (541)
+.|.. ..|. .+...|+|.+|++.+|
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 66642 1221 2344555666655554
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.2e-08 Score=99.71 Aligned_cols=225 Identities=30% Similarity=0.286 Sum_probs=123.5
Q ss_pred ccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCcc
Q 036588 301 ISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLE 380 (541)
Q Consensus 301 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 380 (541)
+..+.+|+.+++.+|.+......+..+++|+++++++|.+.... .+..++.|+.|.+.+|.+. .+.. +..++.|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~~~--~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DISG--LESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccccccccc--chhhccchhhheeccCcch-hccC--Cccchhhh
Confidence 34445555555555555433332445555555555555554321 1223444666666666654 2211 22366677
Q ss_pred EEEccCcccccCCC-cCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccC--CcceEeccC
Q 036588 381 ELYLSNNMFYGEIP-SDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLF--QLQWLDLSD 457 (541)
Q Consensus 381 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~--~L~~L~l~~ 457 (541)
.+++++|.+...-. . ...+.+++.+.+.++.+... ..+..+..+..+.+..+.+.... .....+ +|+.+++.+
T Consensus 166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~-~l~~~~~~~L~~l~l~~ 241 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLE-GLNELVMLHLRELYLSG 241 (414)
T ss_pred cccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceecc-CcccchhHHHHHHhccc
Confidence 77777776653222 1 35666777777777766432 23333444444466666655222 222233 377888888
Q ss_pred CcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceeccc---CCCC-CCCccccceEEeecccc
Q 036588 458 NQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGE---IPSD-TPNCSYLRILVVQFNNF 533 (541)
Q Consensus 458 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~-~~~~~~L~~L~l~~~~~ 533 (541)
+.+.. .+..+..++.++.+++.++.+.. . ..+...+.+..+...++++... ..+. ....+.++.+++.+++.
T Consensus 242 n~i~~-~~~~~~~~~~l~~l~~~~n~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 242 NRISR-SPEGLENLKNLPVLDLSSNRISN-L--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPI 317 (414)
T ss_pred Ccccc-ccccccccccccccchhhccccc-c--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcc
Confidence 87763 22445567778888888777733 2 3345566677777777765522 2222 55667777777777776
Q ss_pred cccCC
Q 036588 534 SGAIP 538 (541)
Q Consensus 534 ~~~~p 538 (541)
....|
T Consensus 318 ~~~~~ 322 (414)
T KOG0531|consen 318 RKISS 322 (414)
T ss_pred ccccc
Confidence 65443
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.8e-08 Score=98.46 Aligned_cols=112 Identities=28% Similarity=0.349 Sum_probs=92.2
Q ss_pred CCcEEEccccccccccCC-CcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeee
Q 036588 426 KLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYL 504 (541)
Q Consensus 426 ~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 504 (541)
.++.|+++++.+.+..+. +..+++|+.|++++|.+...+|..++.+++|+.|++++|.+.+.+| ..+..+++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP-~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP-ESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc-hHHhcCCCCCEEEC
Confidence 367888998888766555 6788899999999998888888888899999999999999988777 56788899999999
Q ss_pred ccceecccCCCCCCCc-cccceEEeecccccccCC
Q 036588 505 SNNMFYGEIPSDTPNC-SYLRILVVQFNNFSGAIP 538 (541)
Q Consensus 505 ~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~p 538 (541)
++|.+.+.+|..+... ..+..+++.+|+.....|
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 9999998888887663 467788888887666555
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.4e-08 Score=84.70 Aligned_cols=205 Identities=21% Similarity=0.129 Sum_probs=120.3
Q ss_pred CCccEEEeccCcccccCC-cccc-ccCCCcEEEccCceeeeecc---CCCCcCCCCEEECCCCcccCCCCcccCCCCCcc
Q 036588 161 SYLRILVLQFNNFSGAIP-KEIS-NLTKLEKLDLQYNKLQGTIP---YAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQ 235 (541)
Q Consensus 161 ~~L~~L~l~~~~i~~~~~-~~l~-~l~~L~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 235 (541)
..++.+.+.++.|..... ..++ .++.++++++.+|.+.++.. .+.++|.|+.|+++.|.+...+........+|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 455566666766653221 1232 45778888888887775433 267888999999988887654444334667888
Q ss_pred EEeccCCcccCcCChhhhccCCCCcEEEecCccccccC--CCCCc-CcccccEEEecccccCC--CccccccccCCccEE
Q 036588 236 FLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEI--PSDTA-NCSYLRILVLRFNNFSG--AIPKEISNLTKLEKL 310 (541)
Q Consensus 236 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~-~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L 310 (541)
++-+.+..+.-.-.......+|.+++|+++.|++.... ..+.. .-+.++++...+|.... .....-..+|++..+
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 98888887654444556678888888888887443211 11111 23456666666664321 112222335667777
Q ss_pred EeeCCccccccc--cccccCCCcEEeccCccccC-CCCcccCCCCcceEEEcccCcCc
Q 036588 311 DLQYNRLQGTIL--YVGHLLQLQWLDLSDNQLSG-SLPSFKFNMPLLQFLDLSSNRLS 365 (541)
Q Consensus 311 ~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~ 365 (541)
-+..|++..... ....+|.+..|++..+.+.+ ...+.+..++.|+.|.++++++.
T Consensus 205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 777676553322 24445555566666655543 11233445666666666666553
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.6e-08 Score=95.67 Aligned_cols=219 Identities=30% Similarity=0.315 Sum_probs=148.8
Q ss_pred cccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccE
Q 036588 302 SNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEE 381 (541)
Q Consensus 302 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 381 (541)
..+..++.+.+..+.+......+..+.+++.+++.++.+... ...+..+++|+.|++++|.|+.... +..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG---LSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc---hhhccchhh
Confidence 345566666677777765555577888999999999988743 3336678999999999998863222 235666999
Q ss_pred EEccCcccccCCCcCCcCCccCCeEEcccCCCCCccc-hhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcC
Q 036588 382 LYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIP-KEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQL 460 (541)
Q Consensus 382 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 460 (541)
|++.+|.+... ..+..+++|+.+++++|++..... . ...+.+++.+.+.++.+.. +........+..+++..+.+
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~-i~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE-IEGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc-ccchHHHHHHHHhhcccccc
Confidence 99999988532 356668889999999988875443 2 4677888888888887762 23333444455556666666
Q ss_pred CCCCCccccCCC--CccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeeccccc
Q 036588 461 SGSLPSFKFKMP--LLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFS 534 (541)
Q Consensus 461 ~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 534 (541)
...-. +...+ .|+.+++.++.+.. .+ ..+..+..+..+++.++.+... +.+...+.+..+....+.+.
T Consensus 221 ~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~-~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 221 SKLEG--LNELVMLHLRELYLSGNRISR-SP-EGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred eeccC--cccchhHHHHHHhcccCcccc-cc-ccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence 53211 12222 37888888888833 32 4566778888888888887744 45666677777777766654
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=7.3e-08 Score=93.96 Aligned_cols=180 Identities=27% Similarity=0.282 Sum_probs=111.1
Q ss_pred CcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcc------cc---cCCCcCCcCCccCCeEEcccCCCCC
Q 036588 345 PSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNM------FY---GEIPSDTQNCSYLRILVLKFNNFPG 415 (541)
Q Consensus 345 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------~~---~~~~~~~~~~~~L~~L~l~~~~~~~ 415 (541)
+-.+..+.+|+.|.+.+|++.. ..++..--..|++|.-.+.- +. +.+...+. .-.|.+.+++.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~-Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPV-WNKLATASFSYNRLV- 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchh-hhhHhhhhcchhhHH-
Confidence 3445678899999999988752 11111111223333222110 00 01111111 124666677777665
Q ss_pred ccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccC
Q 036588 416 AIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHN 495 (541)
Q Consensus 416 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 495 (541)
.+..++.-++.++.|++++|++. ....+..+++|+.|++++|.+.........++. |..|.+++|.+.+ + ..+.+
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~-~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t-L--~gie~ 252 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFT-KVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT-L--RGIEN 252 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhh-hhHHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHh-h--hhHHh
Confidence 45566777788888888888877 344677788888888888877633222233343 8888888888844 3 34677
Q ss_pred Ccccceeeeccceeccc-CCCCCCCccccceEEeecccc
Q 036588 496 LPFLEELYLSNNMFYGE-IPSDTPNCSYLRILVVQFNNF 533 (541)
Q Consensus 496 ~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~ 533 (541)
+.+|+.||++.|-+.+- -.+.+..+.+|+.|++.+|++
T Consensus 253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 88888888888887743 223466678888888888876
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.6e-07 Score=92.48 Aligned_cols=38 Identities=18% Similarity=0.339 Sum_probs=21.8
Q ss_pred CCCcEEEeecCc-cCCCCChhhhhhcCCCcEeecccccc
Q 036588 69 SSLLSINFINNA-LFGELPPNFCNHLSNLESLFLKSNMF 106 (541)
Q Consensus 69 ~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~ 106 (541)
.+|++|+++|.. +....|..++..+|+|+.|.+.+-.+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~ 160 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF 160 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCcee
Confidence 466666666643 23344555666666666666655433
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.8e-07 Score=77.37 Aligned_cols=220 Identities=22% Similarity=0.155 Sum_probs=121.1
Q ss_pred cCCCCccEEEeccCcccccCCcc----ccccCCCcEEEccCceeee-----------eccCCCCcCCCCEEECCCCcccC
Q 036588 158 ANCSYLRILVLQFNNFSGAIPKE----ISNLTKLEKLDLQYNKLQG-----------TIPYAGHLYQLQWLDLSDNQLSG 222 (541)
Q Consensus 158 ~~~~~L~~L~l~~~~i~~~~~~~----l~~l~~L~~L~l~~~~~~~-----------~~~~~~~~~~L~~L~l~~~~~~~ 222 (541)
..+..+..++++||.|......+ +++-.+|+..+++.-.... ..+.+-.||+|+..++++|.+..
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 44677777888887776443333 3344667666665432111 22335677888888888887765
Q ss_pred CCC----cccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCcc
Q 036588 223 SLP----SFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIP 298 (541)
Q Consensus 223 ~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 298 (541)
..+ +.+.....|++|.+++|.+.......+-.. |..| ..+ .-.+.-|.|+.+....|.+.....
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigka---l~~l--a~n-------KKaa~kp~Le~vicgrNRlengs~ 174 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKA---LFHL--AYN-------KKAADKPKLEVVICGRNRLENGSK 174 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHH---HHHH--HHH-------hhhccCCCceEEEeccchhccCcH
Confidence 444 345566777788887776632222111100 0000 000 011233556666666665442211
Q ss_pred ----ccccccCCccEEEeeCCccccccc------cccccCCCcEEeccCccccC----CCCcccCCCCcceEEEcccCcC
Q 036588 299 ----KEISNLTKLEKLDLQYNRLQGTIL------YVGHLLQLQWLDLSDNQLSG----SLPSFKFNMPLLQFLDLSSNRL 364 (541)
Q Consensus 299 ----~~l~~l~~L~~L~l~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~ 364 (541)
..+..-..|+.+.+..|.+..... .+..+.+|+.|++.+|.++. ........++.|+.|.+.+|-+
T Consensus 175 ~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 175 ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence 223333577777777777654321 25667788888888876652 2334455677788888888766
Q ss_pred cCcCChhhhc-----CCCCccEEEccCccc
Q 036588 365 SVELPTNVFH-----NLPFLEELYLSNNMF 389 (541)
Q Consensus 365 ~~~~~~~~~~-----~~~~L~~L~l~~~~~ 389 (541)
+..-....+. ..|+|..|...++.+
T Consensus 255 s~~G~~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 255 SNEGVKSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred ccccHHHHHHHhhhhcCCCccccccchhhh
Confidence 5333322222 246666666666654
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.3e-07 Score=92.27 Aligned_cols=199 Identities=26% Similarity=0.193 Sum_probs=129.1
Q ss_pred ccCCccEEEeeCCccccc--cccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhc------
Q 036588 303 NLTKLEKLDLQYNRLQGT--ILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFH------ 374 (541)
Q Consensus 303 ~l~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------ 374 (541)
.+++++.+.+-.-.-.+. ...+..+.+|++|.+.+|++.. ......--..|++|.-.+. . ......|.
T Consensus 82 ~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~-~~GL~~lr~qLe~LIC~~S-l--~Al~~v~ascggd~ 157 (1096)
T KOG1859|consen 82 FLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST-AKGLQELRHQLEKLICHNS-L--DALRHVFASCGGDI 157 (1096)
T ss_pred HHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh-hhhhHHHHHhhhhhhhhcc-H--HHHHHHHHHhcccc
Confidence 345556665544433222 2236778899999999998763 1111111123333322211 0 01111111
Q ss_pred ----CCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCc
Q 036588 375 ----NLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQL 450 (541)
Q Consensus 375 ----~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L 450 (541)
....|...++++|.+. .+...++-++.++.|+++.|++.... .+..|++|++|+|+.|.+......-..-.+|
T Consensus 158 ~ns~~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L 234 (1096)
T KOG1859|consen 158 SNSPVWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKL 234 (1096)
T ss_pred ccchhhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhh
Confidence 2345777788888775 55667888899999999999987543 7888999999999999987443333333459
Q ss_pred ceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceec
Q 036588 451 QWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 451 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 510 (541)
..|.+++|.++. ...+.++.+|+.||+++|-+.+.-...-+..+..|+.|++.|||+-
T Consensus 235 ~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 235 QLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 999999998763 2345688899999999998755333234556678999999999976
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.07 E-value=6e-07 Score=77.29 Aligned_cols=86 Identities=22% Similarity=0.192 Sum_probs=51.2
Q ss_pred CcccccEEEecccccCCC----ccccccccCCccEEEeeCCccccc-----------cccccccCCCcEEeccCccccCC
Q 036588 279 NCSYLRILVLRFNNFSGA----IPKEISNLTKLEKLDLQYNRLQGT-----------ILYVGHLLQLQWLDLSDNQLSGS 343 (541)
Q Consensus 279 ~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~-----------~~~~~~~~~L~~L~l~~~~~~~~ 343 (541)
.+..++.+++++|.+... +...+.+-.+|+..++++-..... ...+..||.|+.+++++|-+...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 356788888888877543 334455567777777765432211 12245677777777777765533
Q ss_pred CC----cccCCCCcceEEEcccCcC
Q 036588 344 LP----SFKFNMPLLQFLDLSSNRL 364 (541)
Q Consensus 344 ~~----~~~~~~~~L~~L~l~~~~~ 364 (541)
.+ ..+.+...|++|.+++|.+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCC
Confidence 22 3334556666676666655
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.1e-06 Score=89.72 Aligned_cols=156 Identities=23% Similarity=0.305 Sum_probs=98.4
Q ss_pred CcceEEEcccCc-CcCcCChhhhcCCCCccEEEccCccccc-CCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcE
Q 036588 352 PLLQFLDLSSNR-LSVELPTNVFHNLPFLEELYLSNNMFYG-EIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEK 429 (541)
Q Consensus 352 ~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 429 (541)
.+|+.|+++|.. +...++......+|+|+.|.+.+-.+.. .......++|+|..||++++.++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 355555555533 2224455556667888888777765532 2233456778888888888877644 56777888888
Q ss_pred EEcccccccc--ccCCCcccCCcceEeccCCcCCCCC------CccccCCCCccEeeCCCCccccccCcccccCCcccce
Q 036588 430 LDLQYNRLQG--TIPYAGHLFQLQWLDLSDNQLSGSL------PSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEE 501 (541)
Q Consensus 430 L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 501 (541)
|.+.+-.+.. ....+..+++|+.||++........ .+....+|+|+.||.++..+...+....+..-|+|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 8777766553 2223567888888888876543211 1122357888888888888876665555566677777
Q ss_pred eeecccee
Q 036588 502 LYLSNNMF 509 (541)
Q Consensus 502 L~l~~~~~ 509 (541)
+-..+|..
T Consensus 280 i~~~~~~~ 287 (699)
T KOG3665|consen 280 IAALDCLA 287 (699)
T ss_pred hhhhhhhc
Confidence 76655443
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.7e-05 Score=65.55 Aligned_cols=107 Identities=21% Similarity=0.205 Sum_probs=78.1
Q ss_pred CCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEcccccccccc--CCCcccCCcceE
Q 036588 376 LPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTI--PYAGHLFQLQWL 453 (541)
Q Consensus 376 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L 453 (541)
......+++.+|.+. -...|..++.|.+|.+.+|.++.+.+.--..+++|..|.+.+|.+.... ..+..+|.|++|
T Consensus 41 ~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 345566777877764 2246778888888889888888777766666788889999888876433 336778899999
Q ss_pred eccCCcCCCC---CCccccCCCCccEeeCCCCcc
Q 036588 454 DLSDNQLSGS---LPSFKFKMPLLQFLDLSSNRL 484 (541)
Q Consensus 454 ~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~ 484 (541)
.+-+|++... -...+..+|+|++||+.+-..
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 9988887641 113566789999999887643
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.86 E-value=6.3e-05 Score=60.40 Aligned_cols=63 Identities=22% Similarity=0.267 Sum_probs=25.4
Q ss_pred hhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeC
Q 036588 250 TNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQY 314 (541)
Q Consensus 250 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 314 (541)
...|..+++|+.+.+.. .+.......|..+++|+.+.+.++ +.......+..+++++.+.+..
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence 34455555555555543 233344455555555555555543 3323333445555555555543
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00012 Score=69.02 Aligned_cols=135 Identities=16% Similarity=0.161 Sum_probs=71.8
Q ss_pred CCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccC-CCCCccchhhhccCCCc
Q 036588 350 NMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFN-NFPGAIPKEISNLTKLE 428 (541)
Q Consensus 350 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~ 428 (541)
.+++++.|++++|.++ .+|. -.++|+.|.+.+|.....++..+ .++|++|++++| .+. ..| ++|+
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sLe 115 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESVR 115 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cccc
Confidence 4577778888877665 4441 23467788777765433444333 357777777777 332 222 3466
Q ss_pred EEEccccccccccCCCcccCCcceEeccCCc-CC-CCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeecc
Q 036588 429 KLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQ-LS-GSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSN 506 (541)
Q Consensus 429 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 506 (541)
.|.+.++..... -.-.++|+.|.+.++. .. ...+.. -.++|++|++.+|.... +| ..++ .+|+.|+++.
T Consensus 116 ~L~L~~n~~~~L---~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~-LP-~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 116 SLEIKGSATDSI---KNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII-LP-EKLP--ESLQSITLHI 186 (426)
T ss_pred eEEeCCCCCccc---ccCcchHhheeccccccccccccccc--cCCcccEEEecCCCccc-Cc-cccc--ccCcEEEecc
Confidence 666655433211 1123456666664322 11 011111 12567777777777532 33 2233 4777777765
Q ss_pred c
Q 036588 507 N 507 (541)
Q Consensus 507 ~ 507 (541)
+
T Consensus 187 n 187 (426)
T PRK15386 187 E 187 (426)
T ss_pred c
Confidence 4
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.82 E-value=3.3e-05 Score=63.87 Aligned_cols=103 Identities=23% Similarity=0.245 Sum_probs=53.4
Q ss_pred cCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCC-cccCCcceEeccCCcCCCC-CCccccCCCCccEeeC
Q 036588 402 YLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGS-LPSFKFKMPLLQFLDL 479 (541)
Q Consensus 402 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l 479 (541)
....+|+++|++.. ...|..++.|.+|.+.+|+++...+.+ ..+++|+.|.+.+|.+.+. -..-+..||+|++|.+
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 45556666665532 234555666666666666666544443 3345566666666655431 1122445666666666
Q ss_pred CCCccccccC--cccccCCcccceeeecc
Q 036588 480 SSNRLSTELP--TNVFHNLPFLEELYLSN 506 (541)
Q Consensus 480 ~~~~~~~~~~--~~~~~~~~~L~~L~l~~ 506 (541)
-+|++...-. ...+..+|+|+.||..+
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 6665532111 02334455666665553
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.80 E-value=6.2e-05 Score=60.46 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=12.9
Q ss_pred CCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEc
Q 036588 396 DTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDL 432 (541)
Q Consensus 396 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 432 (541)
.|.++++|+.+.+..+ +......+|..+++++.+.+
T Consensus 30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITF 65 (129)
T ss_dssp TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEE
T ss_pred hccccccccccccccc-ccccceeeeecccccccccc
Confidence 3444444444444432 33333334444444444444
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.74 E-value=3.5e-05 Score=47.65 Aligned_cols=35 Identities=34% Similarity=0.585 Sum_probs=15.6
Q ss_pred CCcEecccccccCCccchhhhhcCCCcEEEeecCcc
Q 036588 46 SLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNAL 81 (541)
Q Consensus 46 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (541)
+|++|++++|.++ .+|..+.++++|++|++++|.+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence 4444444444444 3444444444444444444444
|
... |
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.69 E-value=2.9e-05 Score=48.01 Aligned_cols=37 Identities=41% Similarity=0.558 Sum_probs=31.8
Q ss_pred CCeEEEEecCCcceeeeCCcccCCCCCcEecccccccC
Q 036588 21 YRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFS 58 (541)
Q Consensus 21 ~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~ 58 (541)
++|++|++++++|+ .+|..++++++|+.|++++|.++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 36899999999999 56777999999999999999987
|
... |
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00047 Score=65.16 Aligned_cols=57 Identities=19% Similarity=0.139 Sum_probs=31.3
Q ss_pred ccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeecccc
Q 036588 41 LGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSN 104 (541)
Q Consensus 41 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 104 (541)
+..+++++.|++++|.++ .+|. --.+|++|.+.+|...+.+|..+ .++|++|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCc
Confidence 334566666666666555 4451 11246666666655445555433 346666666655
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=4.9e-06 Score=84.08 Aligned_cols=109 Identities=27% Similarity=0.206 Sum_probs=46.3
Q ss_pred cccccEEEecccccCCC--ccccccccCCccEEEeeCC-cccccc-----ccccccCCCcEEeccCcc-ccCCC-CcccC
Q 036588 280 CSYLRILVLRFNNFSGA--IPKEISNLTKLEKLDLQYN-RLQGTI-----LYVGHLLQLQWLDLSDNQ-LSGSL-PSFKF 349 (541)
Q Consensus 280 ~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~-~~~~~~-----~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~ 349 (541)
++.|+.+.+.++.-... .......+++|+.|+++++ ...... .....+++|+.++++.+. +++.. .....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666665532212 2234455666666666652 111000 012334455555555444 22111 11111
Q ss_pred CCCcceEEEcccCc-CcCcCChhhhcCCCCccEEEccCcc
Q 036588 350 NMPLLQFLDLSSNR-LSVELPTNVFHNLPFLEELYLSNNM 388 (541)
Q Consensus 350 ~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~ 388 (541)
.|++|+.|.+.+|. +++.....+...++.|++|++.+|.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 24455555444444 3333333344444445555544443
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=7.7e-06 Score=82.66 Aligned_cols=239 Identities=24% Similarity=0.160 Sum_probs=135.6
Q ss_pred hhccCCCCcEEEecCcccccc--CCCCCcCcccccEEEeccc-ccCCC----ccccccccCCccEEEeeCCc-ccccccc
Q 036588 252 VFHNLPFLEELYLSNNMFYGE--IPSDTANCSYLRILVLRFN-NFSGA----IPKEISNLTKLEKLDLQYNR-LQGTILY 323 (541)
Q Consensus 252 ~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~-~~~~~----~~~~l~~l~~L~~L~l~~~~-~~~~~~~ 323 (541)
....++.|+.+.+.++.-... .......++.|+.|+++++ ..... .......+++|+.++++++. +.+....
T Consensus 183 l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 183 LLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred HHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence 344578888888887743222 2233456788999999873 21111 12344567889999998887 4332222
Q ss_pred --ccccCCCcEEeccCcc-ccC-CCCcccCCCCcceEEEcccCcCc-CcCChhhhcCCCCccEEEccCcccccCCCcCCc
Q 036588 324 --VGHLLQLQWLDLSDNQ-LSG-SLPSFKFNMPLLQFLDLSSNRLS-VELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQ 398 (541)
Q Consensus 324 --~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 398 (541)
...+++|+.|.+.+|. +++ .+......++.|++|++++|... +........++++++.+.+....
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~---------- 332 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN---------- 332 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC----------
Confidence 2348899999988777 332 33444567888999999987643 22233345567777776544332
Q ss_pred CCccCCeEEcccCCCC---CccchhhhccCCCcEEEcccccccccc--CCCcccCCcceEeccCCcCCCCCCccccCCCC
Q 036588 399 NCSYLRILVLKFNNFP---GAIPKEISNLTKLEKLDLQYNRLQGTI--PYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPL 473 (541)
Q Consensus 399 ~~~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 473 (541)
.|+.++.+.+.++... .........|+.++.+.+..+...... .....++.|. ..+..+ ......
T Consensus 333 ~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~---------~~~~~~ 402 (482)
T KOG1947|consen 333 GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR---------LCRSDS 402 (482)
T ss_pred CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH---------hccCCc
Confidence 1556666666554331 233335567888888888887733222 1134444442 111111 111222
Q ss_pred ccEeeCCCCccccccCcccccC-Ccccceeeeccceec
Q 036588 474 LQFLDLSSNRLSTELPTNVFHN-LPFLEELYLSNNMFY 510 (541)
Q Consensus 474 L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~ 510 (541)
++.|++..|...+.-....... +..++.+++.+++..
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 6777777776533322222222 556677777776644
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=5.5e-06 Score=63.77 Aligned_cols=106 Identities=25% Similarity=0.201 Sum_probs=76.1
Q ss_pred ccCCeEEcccCCCCCccch---hhhccCCCcEEEccccccccccCCC-cccCCcceEeccCCcCCCCCCccccCCCCccE
Q 036588 401 SYLRILVLKFNNFPGAIPK---EISNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQF 476 (541)
Q Consensus 401 ~~L~~L~l~~~~~~~~~~~---~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 476 (541)
.-+..++++.|++.+ .+. .+.....|+.+++++|.+....+.+ ..++..+.+++.+|.++ ..|..++.+|.|+.
T Consensus 27 kE~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred HHhhhcccccchhhH-HHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 356678888888763 233 3445677788899999887555443 45678888999999888 55666888999999
Q ss_pred eeCCCCccccccCcccccCCcccceeeeccceec
Q 036588 477 LDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 477 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 510 (541)
|+++.|++.- .+ ..+..+.++-.|+..++.+.
T Consensus 105 lNl~~N~l~~-~p-~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 105 LNLRFNPLNA-EP-RVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred cccccCcccc-ch-HHHHHHHhHHHhcCCCCccc
Confidence 9999998833 44 34444777777777777777
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=5.6e-05 Score=58.38 Aligned_cols=100 Identities=23% Similarity=0.335 Sum_probs=47.6
Q ss_pred EEEEecCCcceeeeCCc---ccCCCCCcEecccccccCCccchhhh-hcCCCcEEEeecCccCCCCChhhhhhcCCCcEe
Q 036588 24 TALNISGLNLTVTIPSE---LGNLSSLQTLDLSFNWFSGSIPASIF-NMSSLLSINFINNALFGELPPNFCNHLSNLESL 99 (541)
Q Consensus 24 ~~L~l~~~~i~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 99 (541)
-.++++.|.+. .++++ +....+|+..+|++|.+. .+|..|. .++..+.|++.+|.+ ..+|..+.. ++.|+.|
T Consensus 30 h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~nei-sdvPeE~Aa-m~aLr~l 105 (177)
T KOG4579|consen 30 HFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEI-SDVPEELAA-MPALRSL 105 (177)
T ss_pred hhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhh-hhchHHHhh-hHHhhhc
Confidence 34445555443 22222 233344455555555554 4444443 233555555555555 345555444 5555555
Q ss_pred eccccccCccCCccCCCCCCCcEEecCCC
Q 036588 100 FLKSNMFHGKIPSTLSSCKRLRETSLSLN 128 (541)
Q Consensus 100 ~l~~~~~~~~~~~~~~~l~~L~~l~~~~~ 128 (541)
+++.|.+. ..|..+..+.++.+|+...+
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCC
Confidence 55555554 44444444555555544444
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.96 E-value=2.1e-05 Score=68.34 Aligned_cols=101 Identities=21% Similarity=0.164 Sum_probs=64.1
Q ss_pred CccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCC-CccccCCCCccEee
Q 036588 400 CSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSL-PSFKFKMPLLQFLD 478 (541)
Q Consensus 400 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~ 478 (541)
+.+.+.|++++|.++++ .....++.|+.|.|+-|++.. ...+..|++|++|+|..|.+.+.- .+.+.++|+|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss-L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS-LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeecccccc-chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 45677788888887643 345567888888888887763 334556777888888777766311 12345677777777
Q ss_pred CCCCccccccCc----ccccCCcccceee
Q 036588 479 LSSNRLSTELPT----NVFHNLPFLEELY 503 (541)
Q Consensus 479 l~~~~~~~~~~~----~~~~~~~~L~~L~ 503 (541)
|..|+-.+..+. ..+..+|+|++||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 777765443321 1234466666664
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.82 E-value=6.7e-05 Score=65.28 Aligned_cols=100 Identities=23% Similarity=0.247 Sum_probs=60.9
Q ss_pred CCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccc--cCCCcccCCcce
Q 036588 375 NLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGT--IPYAGHLFQLQW 452 (541)
Q Consensus 375 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~ 452 (541)
.+.+.+.|+..+|.+.++ .....++.|+.|.|+-|+++.. ..|..|++|++|.|..|.+.+. ...+.++|+|+.
T Consensus 17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 345666777777776532 2345677777777777777633 3566777777777777766532 222566677777
Q ss_pred EeccCCcCCCCCC-----ccccCCCCccEee
Q 036588 453 LDLSDNQLSGSLP-----SFKFKMPLLQFLD 478 (541)
Q Consensus 453 L~l~~~~~~~~~~-----~~~~~~~~L~~L~ 478 (541)
|-|..|+-..... ..+..+|+|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7777665432211 1345567777665
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.00038 Score=60.43 Aligned_cols=104 Identities=22% Similarity=0.208 Sum_probs=52.9
Q ss_pred CCCCccEEEccCcccccCCCcCCcCCccCCeEEcccC--CCCCccchhhhccCCCcEEEcccccccc--ccCCCcccCCc
Q 036588 375 NLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFN--NFPGAIPKEISNLTKLEKLDLQYNRLQG--TIPYAGHLFQL 450 (541)
Q Consensus 375 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L 450 (541)
.+..|+.+++.++.++. ...+..+++|++|.++.| ++...+.-....+++|+.+++++|++.. .......+.+|
T Consensus 41 ~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 34455555555555431 234556666677777666 4443333333345667777777766652 12224455556
Q ss_pred ceEeccCCcCCCCC---CccccCCCCccEeeCC
Q 036588 451 QWLDLSDNQLSGSL---PSFKFKMPLLQFLDLS 480 (541)
Q Consensus 451 ~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~ 480 (541)
.+|++..|..+... ...+.-+|+|++|+-.
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 66666666444311 1123345566655533
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0008 Score=58.44 Aligned_cols=86 Identities=23% Similarity=0.215 Sum_probs=47.9
Q ss_pred cccccCcceEEEecCc--cccccCCccccCCCCccEEEeccCcccc-cCCccccccCCCcEEEccCceeeeeccC----C
Q 036588 132 WDHTKRNWQQLYLSKN--MFYGEIPSDIANCSYLRILVLQFNNFSG-AIPKEISNLTKLEKLDLQYNKLQGTIPY----A 204 (541)
Q Consensus 132 ~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~----~ 204 (541)
.+..+++|++|.++.| .+...+......+|+|+++++++|++.. .....+.++.+|..|++.+|..+..... +
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf 139 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVF 139 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHH
Confidence 3444455566666666 4443444444566888888888887763 1122345566677777777655432211 3
Q ss_pred CCcCCCCEEECCC
Q 036588 205 GHLYQLQWLDLSD 217 (541)
Q Consensus 205 ~~~~~L~~L~l~~ 217 (541)
..+++|++|+-.+
T Consensus 140 ~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 140 LLLPSLKYLDGCD 152 (260)
T ss_pred HHhhhhccccccc
Confidence 4455566555433
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.00036 Score=58.01 Aligned_cols=82 Identities=22% Similarity=0.086 Sum_probs=34.6
Q ss_pred CcEEEccccccccccC-CCcccCCcceEeccCCcCCC-C-CCccccCCCCccEeeCCCCccccccCcccccCCcccceee
Q 036588 427 LEKLDLQYNRLQGTIP-YAGHLFQLQWLDLSDNQLSG-S-LPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELY 503 (541)
Q Consensus 427 L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~-~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 503 (541)
++.++-+++.+....- .+..++.++.|.+..|.-.+ - +...-+-.++|+.|++++|.-.++-....+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 4444444444432111 13444455555555553221 0 0111112355555555555443443334444455555555
Q ss_pred eccce
Q 036588 504 LSNNM 508 (541)
Q Consensus 504 l~~~~ 508 (541)
+.+-+
T Consensus 183 l~~l~ 187 (221)
T KOG3864|consen 183 LYDLP 187 (221)
T ss_pred hcCch
Confidence 54433
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.012 Score=29.98 Aligned_cols=21 Identities=48% Similarity=0.740 Sum_probs=13.2
Q ss_pred CeEEEEecCCcceeeeCCcccC
Q 036588 22 RVTALNISGLNLTVTIPSELGN 43 (541)
Q Consensus 22 ~l~~L~l~~~~i~~~~~~~~~~ 43 (541)
+|++|++++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3667777777777 45555654
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.0034 Score=52.37 Aligned_cols=82 Identities=17% Similarity=0.086 Sum_probs=53.5
Q ss_pred cCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccC---CCcccCCcceEeccCC-cCCCCCCccccCCCCccEe
Q 036588 402 YLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIP---YAGHLFQLQWLDLSDN-QLSGSLPSFKFKMPLLQFL 477 (541)
Q Consensus 402 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L 477 (541)
.++.++-+++.+.....+.+..+++++.|.+.+|+..+.-- .-+..++|+.|++++| .|++.....+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 34556666666665666666677777777777776532211 1234677888888877 5666666677788888888
Q ss_pred eCCCCc
Q 036588 478 DLSSNR 483 (541)
Q Consensus 478 ~l~~~~ 483 (541)
.+.+=+
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 776543
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.029 Score=28.53 Aligned_cols=12 Identities=50% Similarity=0.401 Sum_probs=5.4
Q ss_pred cceeeeccceec
Q 036588 499 LEELYLSNNMFY 510 (541)
Q Consensus 499 L~~L~l~~~~~~ 510 (541)
|++|++++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.038 Score=26.02 Aligned_cols=17 Identities=29% Similarity=0.514 Sum_probs=7.9
Q ss_pred cccceEEeecccccccCC
Q 036588 521 SYLRILVVQFNNFSGAIP 538 (541)
Q Consensus 521 ~~L~~L~l~~~~~~~~~p 538 (541)
++|+.|++++|++. ++|
T Consensus 1 ~~L~~L~l~~n~L~-~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT-SLP 17 (17)
T ss_dssp TT-SEEEETSS--S-SE-
T ss_pred CccCEEECCCCCCC-CCc
Confidence 35666777777653 554
|
... |
| >PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.056 Score=33.17 Aligned_cols=17 Identities=59% Similarity=1.539 Sum_probs=11.8
Q ss_pred CCCCC--CCccccceeeeC
Q 036588 1 NWNTS--SSVCNWTGITCD 17 (541)
Q Consensus 1 ~~~~~--~~~~~~~~~~~~ 17 (541)
+|+.. .++|.|.|++|+
T Consensus 25 ~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 25 SWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp T--TT--S-CCCSTTEEE-
T ss_pred cCCCcCCCCCeeeccEEeC
Confidence 58887 799999999995
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A. |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.011 Score=50.53 Aligned_cols=90 Identities=14% Similarity=0.197 Sum_probs=66.3
Q ss_pred eCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCC
Q 036588 37 IPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSS 116 (541)
Q Consensus 37 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 116 (541)
....+..+...+.||++.+.+- .+...|..++.|..|+++.+.+ .-.|..+.. ...++.+++..|..+ ..|..+++
T Consensus 34 ~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~-~~~~~d~~q-~~e~~~~~~~~n~~~-~~p~s~~k 109 (326)
T KOG0473|consen 34 PVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQI-KFLPKDAKQ-QRETVNAASHKNNHS-QQPKSQKK 109 (326)
T ss_pred chhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhH-hhChhhHHH-HHHHHHHHhhccchh-hCCccccc
Confidence 3445677777888888887765 5666777777888888888877 566777766 777788888777766 67888888
Q ss_pred CCCCcEEecCCCcc
Q 036588 117 CKRLRETSLSLNDF 130 (541)
Q Consensus 117 l~~L~~l~~~~~~~ 130 (541)
.+++++++...+++
T Consensus 110 ~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEF 123 (326)
T ss_pred cCCcchhhhccCcc
Confidence 88888877766654
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.36 E-value=0.002 Score=63.34 Aligned_cols=84 Identities=29% Similarity=0.277 Sum_probs=38.5
Q ss_pred CcEEeccCccccCC----CCcccCCCCcceEEEcccCcCcCcCChhhhcCC----CCccEEEccCcccccCC----CcCC
Q 036588 330 LQWLDLSDNQLSGS----LPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNL----PFLEELYLSNNMFYGEI----PSDT 397 (541)
Q Consensus 330 L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~----~~~~ 397 (541)
+..+.+.+|.+... +...+...+.|..|++++|.+.+.........+ ..++.|.+..|.+.... ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 55566666655432 222333456666666666665433222222211 23444555555444221 1223
Q ss_pred cCCccCCeEEcccCCC
Q 036588 398 QNCSYLRILVLKFNNF 413 (541)
Q Consensus 398 ~~~~~L~~L~l~~~~~ 413 (541)
...+.++.++++.|.+
T Consensus 169 ~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccchhHHHHHhccc
Confidence 3345555555555544
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=88.88 E-value=0.12 Score=26.91 Aligned_cols=16 Identities=44% Similarity=0.526 Sum_probs=7.1
Q ss_pred CCCcEecccccccCCc
Q 036588 45 SSLQTLDLSFNWFSGS 60 (541)
Q Consensus 45 ~~L~~L~l~~~~~~~~ 60 (541)
++|++|+|++|.+++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 4555555555555433
|
... |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.20 E-value=0.013 Score=50.12 Aligned_cols=87 Identities=22% Similarity=0.197 Sum_probs=75.2
Q ss_pred CCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEe
Q 036588 20 TYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESL 99 (541)
Q Consensus 20 ~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 99 (541)
+.++++||++.+..- -+...|+-++.+..||++.+.+. ..|..+.....+++++..+|.. ...|.++.. .++++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~-~~~p~s~~k-~~~~k~~ 116 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNH-SQQPKSQKK-EPHPKKN 116 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccch-hhCCccccc-cCCcchh
Confidence 568999999998887 45667899999999999999987 8999999999999999998877 588888888 9999999
Q ss_pred eccccccCccC
Q 036588 100 FLKSNMFHGKI 110 (541)
Q Consensus 100 ~l~~~~~~~~~ 110 (541)
+..++.+....
T Consensus 117 e~k~~~~~~~~ 127 (326)
T KOG0473|consen 117 EQKKTEFFRKL 127 (326)
T ss_pred hhccCcchHHH
Confidence 99988766443
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=86.77 E-value=0.62 Score=24.68 Aligned_cols=12 Identities=33% Similarity=0.542 Sum_probs=5.5
Q ss_pred CCcEEEeecCcc
Q 036588 70 SLLSINFINNAL 81 (541)
Q Consensus 70 ~L~~L~l~~~~~ 81 (541)
+|++|++.+|.+
T Consensus 3 ~L~~L~L~~N~l 14 (26)
T smart00369 3 NLRELDLSNNQL 14 (26)
T ss_pred CCCEEECCCCcC
Confidence 444444444444
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=86.77 E-value=0.62 Score=24.68 Aligned_cols=12 Identities=33% Similarity=0.542 Sum_probs=5.5
Q ss_pred CCcEEEeecCcc
Q 036588 70 SLLSINFINNAL 81 (541)
Q Consensus 70 ~L~~L~l~~~~~ 81 (541)
+|++|++.+|.+
T Consensus 3 ~L~~L~L~~N~l 14 (26)
T smart00370 3 NLRELDLSNNQL 14 (26)
T ss_pred CCCEEECCCCcC
Confidence 444444444444
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.54 E-value=0.0068 Score=59.76 Aligned_cols=88 Identities=28% Similarity=0.173 Sum_probs=46.8
Q ss_pred CCCCccEEEccCcccccC----CCcCCcCCcc-CCeEEcccCCCCCccch----hhhcc-CCCcEEEccccccccccCC-
Q 036588 375 NLPFLEELYLSNNMFYGE----IPSDTQNCSY-LRILVLKFNNFPGAIPK----EISNL-TKLEKLDLQYNRLQGTIPY- 443 (541)
Q Consensus 375 ~~~~L~~L~l~~~~~~~~----~~~~~~~~~~-L~~L~l~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~~~~~~~~- 443 (541)
...+++++.+.+|.++.. ....+...++ ++.+++..|.+.+.... .+..+ ..++.++++.|++......
T Consensus 202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~ 281 (478)
T KOG4308|consen 202 PLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRD 281 (478)
T ss_pred ccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHH
Confidence 345566666666665421 1123344444 56677777766544222 22333 4556777777766532221
Q ss_pred ----CcccCCcceEeccCCcCCC
Q 036588 444 ----AGHLFQLQWLDLSDNQLSG 462 (541)
Q Consensus 444 ----~~~~~~L~~L~l~~~~~~~ 462 (541)
...++.++.+.+..+++.+
T Consensus 282 L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 282 LAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHhhhHHHHHhhcccCcccc
Confidence 3445567777777766654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 541 | ||||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 1e-44 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 2e-44 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 2e-17 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 5e-14 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 2e-10 | ||
| 2omx_A | 462 | Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX | 1e-10 | ||
| 2omt_A | 462 | Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt | 2e-10 | ||
| 3t6q_A | 606 | Crystal Structure Of Mouse Rp105MD-1 Complex Length | 8e-09 | ||
| 2omy_A | 461 | Crystal Structure Of Inla S192n/hec1 Complex Length | 2e-08 | ||
| 1o6s_A | 466 | Internalin (Listeria Monocytogenes) E-Cadherin (Hum | 3e-08 | ||
| 3b2d_A | 603 | Crystal Structure Of Human Rp105MD-1 Complex Length | 6e-08 | ||
| 3b2d_A | 603 | Crystal Structure Of Human Rp105MD-1 Complex Length | 4e-06 | ||
| 2o6q_A | 270 | Structural Diversity Of The Hagfish Variable Lympho | 1e-07 | ||
| 2o6q_A | 270 | Structural Diversity Of The Hagfish Variable Lympho | 4e-07 | ||
| 2omu_A | 462 | Crystal Structure Of Inla G194s+s Y369s/hec1 Comple | 3e-06 | ||
| 2omv_A | 461 | Crystal Structure Of Inla S192n Y369s/hec1 Complex | 6e-06 | ||
| 2omv_A | 461 | Crystal Structure Of Inla S192n Y369s/hec1 Complex | 1e-04 | ||
| 3rg1_A | 612 | Crystal Structure Of The Rp105MD-1 Complex Length = | 2e-05 | ||
| 2omz_A | 466 | Crystal Structure Of Inla Y369a/hec1 Complex Length | 2e-05 | ||
| 1sq0_B | 288 | Crystal Structure Of The Complex Of The Wild-Type V | 2e-05 | ||
| 1sq0_B | 288 | Crystal Structure Of The Complex Of The Wild-Type V | 1e-04 | ||
| 3m18_A | 251 | Crystal Structure Of Variable Lymphocyte Receptor V | 3e-05 | ||
| 3m19_A | 251 | Crystal Structure Of Variable Lymphocyte Receptor V | 3e-05 | ||
| 3zyo_A | 411 | Crystal Structure Of The N-Terminal Leucine Rich Re | 4e-05 | ||
| 3zyn_A | 321 | Crystal Structure Of The N-Terminal Leucine Rich Re | 4e-05 | ||
| 3ulu_A | 694 | Structure Of Quaternary Complex Of Human Tlr3ecd Wi | 8e-05 | ||
| 2a0z_A | 705 | The Molecular Structure Of Toll-like Receptor 3 Lig | 1e-04 | ||
| 1ziw_A | 680 | Human Toll-Like Receptor 3 Extracellular Domain Str | 1e-04 | ||
| 3cig_A | 697 | Crystal Structure Of Mouse Tlr3 Ectodomain Length = | 1e-04 | ||
| 2id5_A | 477 | Crystal Structure Of The Lingo-1 Ectodomain Length | 1e-04 | ||
| 2z7x_B | 520 | Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu | 2e-04 | ||
| 1u0n_D | 265 | The Ternary Von Willebrand Factor A1-Glycoprotein I | 4e-04 | ||
| 3p72_A | 269 | Structure Of Platelet Glycoprotein 1b Alpha With A | 4e-04 | ||
| 3rfs_A | 272 | Design Of A Binding Scaffold Based On Variable Lymp | 5e-04 | ||
| 3v47_A | 455 | Crystal Structure Of The N-Tetminal Fragment Of Zeb | 5e-04 | ||
| 1m10_B | 290 | Crystal Structure Of The Complex Of Glycoprotein Ib | 5e-04 | ||
| 1m0z_A | 290 | Crystal Structure Of The Von Willebrand Factor Bind | 5e-04 | ||
| 3zyj_A | 440 | Netring1 In Complex With Ngl1 Length = 440 | 8e-04 |
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
| >pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
| >pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606 | Back alignment and structure |
|
| >pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461 | Back alignment and structure |
|
| >pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466 | Back alignment and structure |
|
| >pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603 | Back alignment and structure |
|
| >pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603 | Back alignment and structure |
|
| >pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270 | Back alignment and structure |
|
| >pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270 | Back alignment and structure |
|
| >pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462 | Back alignment and structure |
|
| >pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461 | Back alignment and structure |
|
| >pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461 | Back alignment and structure |
|
| >pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612 | Back alignment and structure |
|
| >pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466 | Back alignment and structure |
|
| >pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288 | Back alignment and structure |
|
| >pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288 | Back alignment and structure |
|
| >pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251 | Back alignment and structure |
|
| >pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251 | Back alignment and structure |
|
| >pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411 | Back alignment and structure |
|
| >pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321 | Back alignment and structure |
|
| >pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694 | Back alignment and structure |
|
| >pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705 | Back alignment and structure |
|
| >pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680 | Back alignment and structure |
|
| >pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697 | Back alignment and structure |
|
| >pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477 | Back alignment and structure |
|
| >pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 520 | Back alignment and structure |
|
| >pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265 | Back alignment and structure |
|
| >pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269 | Back alignment and structure |
|
| >pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272 | Back alignment and structure |
|
| >pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455 | Back alignment and structure |
|
| >pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290 | Back alignment and structure |
|
| >pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290 | Back alignment and structure |
|
| >pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 435 bits (1121), Expect = e-145
Identities = 180/555 (32%), Positives = 257/555 (46%), Gaps = 42/555 (7%)
Query: 1 NWNTSSSVCNWTGITCDVRTYRVTALNISGLNLTV---TIPSELGNLSSLQTLDLSFNWF 57
+W+++ + C + G+TC +VT++++S L V + S L +L+ L++L LS +
Sbjct: 32 DWSSNKNPCTFDGVTCRDD--KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHI 89
Query: 58 SGSIPASIFNMSSLLSINFINNALFGELPPNFC-NHLSNLESLFLKSNMFHGKIP-STLS 115
+GS+ +SL S++ N+L G + S L+ L + SN S
Sbjct: 90 NGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148
Query: 116 SCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIA---NCSYLRILVLQFNN 172
L L LS N G C L+ L + N
Sbjct: 149 KLNSLEV-------------------LDLSANSISGANVVGWVLSDGCGELKHLAISGNK 189
Query: 173 FSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMP 232
SG + +S LE LD+ N IP+ G LQ LD+S N+LSG
Sbjct: 190 ISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCT 247
Query: 233 LLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSD-TANCSYLRILVLRFN 291
L+ L++SSN+ +P L L+ L L+ N F GEIP + C L L L N
Sbjct: 248 ELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304
Query: 292 NFSGAIPKEISNLTKLEKLDLQYNRLQGTI--LYVGHLLQLQWLDLSDNQLSGSLPSFKF 349
+F GA+P + + LE L L N G + + + L+ LDLS N+ SG LP
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364
Query: 350 NMPL-LQFLDLSSNRLSVELPTNVFHN-LPFLEELYLSNNMFYGEIPSDTQNCSYLRILV 407
N+ L LDLSSN S + N+ N L+ELYL NN F G+IP NCS L L
Sbjct: 365 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424
Query: 408 LKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPS 466
L FN G IP + +L+KL L L N L+G IP ++ L+ L L N L+G +PS
Sbjct: 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484
Query: 467 FKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRIL 526
L ++ LS+NRL+ E+P L L L LSNN F G IP++ +C L L
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 543
Query: 527 VVQFNNFSGAIPKEI 541
+ N F+G IP +
Sbjct: 544 DLNTNLFNGTIPAAM 558
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 396 bits (1021), Expect = e-130
Identities = 161/533 (30%), Positives = 241/533 (45%), Gaps = 25/533 (4%)
Query: 24 TALNISGLNLTVTIPSEL---GNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNA 80
L++S +++ L+ L +S N SG + + +L ++ +N
Sbjct: 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNN 211
Query: 81 LFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDF---FWDHTKR 137
+P F S L+ L + N G +S+C L+ ++S N F +
Sbjct: 212 FSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK 269
Query: 138 NWQQLYLSKNMFYGEIPSDIA-NCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNK 196
+ Q L L++N F GEIP ++ C L L L N+F GA+P + + LE L L N
Sbjct: 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329
Query: 197 LQGTIPYA--GHLYQLQWLDLSDNQLSGSLPSFKFKMPL-LQFLDLSSNRLSAELPTNVF 253
G +P + L+ LDLS N+ SG LP + L LDLSSN S + N+
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389
Query: 254 HN-LPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDL 312
N L+ELYL NN F G+IP +NCS L L L FN SG IP + +L+KL L L
Sbjct: 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449
Query: 313 QYNRLQGTI-LYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTN 371
N L+G I + ++ L+ L L N L+G +PS N L ++ LS+NRL+ E+P
Sbjct: 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509
Query: 372 VFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLD 431
L L L LSNN F G IP++ +C L L L N F G IP + +
Sbjct: 510 -IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS----GK 564
Query: 432 LQYNRLQGTIP-YAGHLFQLQWLDLSDN--QLSGSLPSFKFKMPLLQFLDLSSNRLSTEL 488
+ N + G Y + + + N + G ++ +++S
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624
Query: 489 PTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPKEI 541
N + L +S NM G IP + + YL IL + N+ SG+IP E+
Sbjct: 625 SPTFD-NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 390 bits (1003), Expect = e-127
Identities = 156/524 (29%), Positives = 231/524 (44%), Gaps = 37/524 (7%)
Query: 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFG 83
L+ISG L+ + + L+ L++S N F G IP + SL ++ N G
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTG 283
Query: 84 ELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLY 143
E+P L L L N F+G +P SC L + L
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL-------------------ESLA 324
Query: 144 LSKNMFYGEIPSD-IANCSYLRILVLQFNNFSGAIPKEISNLT-KLEKLDLQYNKLQGTI 201
LS N F GE+P D + L++L L FN FSG +P+ ++NL+ L LDL N G I
Sbjct: 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384
Query: 202 PYA---GHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPF 258
LQ L L +N +G +P L L LS N LS +P++ +L
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSK 443
Query: 259 LEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQ 318
L +L L NM GEIP + L L+L FN+ +G IP +SN T L + L NRL
Sbjct: 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503
Query: 319 GTI-LYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLP 377
G I ++G L L L LS+N SG++P+ + L +LDL++N + +P +F
Sbjct: 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF-KQS 562
Query: 378 FLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFN--NFPGAIPKEISNLTKLEKLDLQYN 435
++ N G+ +N + N F G ++++ L+ ++
Sbjct: 563 GK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618
Query: 436 RLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFH 494
G + + +LD+S N LSG +P MP L L+L N +S +P
Sbjct: 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE-VG 677
Query: 495 NLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIP 538
+L L L LS+N G IP + L + + NN SG IP
Sbjct: 678 DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 386 bits (993), Expect = e-126
Identities = 168/549 (30%), Positives = 239/549 (43%), Gaps = 56/549 (10%)
Query: 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNAL 81
+ L ISG ++ + + +L+ LD+S N FS IP + + S+L ++ N L
Sbjct: 179 ELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKL 235
Query: 82 FGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQ 141
G+ + L+ L + SN F G IP K L+
Sbjct: 236 SGDFSRAIST-CTELKLLNISSNQFVGPIPP--LPLKSLQY------------------- 273
Query: 142 LYLSKNMFYGEIPSDIA-NCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGT 200
L L++N F GEIP ++ C L L L N+F GA+P + + LE L L N G
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 201 IPYA--GHLYQLQWLDLSDNQLSGSLPSFKFKMPL-LQFLDLSSNRLSAELPTNVFHN-L 256
+P + L+ LDLS N+ SG LP + L LDLSSN S + N+ N
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393
Query: 257 PFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNR 316
L+ELYL NN F G+IP +NCS L L L FN SG IP + +L+KL L L N
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 317 LQGTI-LYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHN 375
L+G I + ++ L+ L L N L+G +PS N L ++ LS+NRL+ E+P
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGR 512
Query: 376 LPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEK------ 429
L L L LSNN F G IP++ +C L L L N F G IP + +
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572
Query: 430 ----------------LDLQYNRLQGTIP-YAGHLFQLQWLDLSDNQLSGSLPSFKFKMP 472
QG L +++ G
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632
Query: 473 LLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNN 532
+ FLD+S N LS +P ++P+L L L +N G IP + + L IL + N
Sbjct: 633 SMMFLDMSYNMLSGYIP-KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691
Query: 533 FSGAIPKEI 541
G IP+ +
Sbjct: 692 LDGRIPQAM 700
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 361 bits (930), Expect = e-117
Identities = 150/482 (31%), Positives = 221/482 (45%), Gaps = 31/482 (6%)
Query: 24 TALNISGLNLTVTIPSEL-GNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALF 82
L+++ T IP L G +L LDLS N F G++P + S L S+ +N
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331
Query: 83 GELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQL 142
GELP + + L+ L L N F G++P +L++ S SL L
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL------SASL------------LTL 373
Query: 143 YLSKNMFYGEIPSDIANC--SYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGT 200
LS N F G I ++ + L+ L LQ N F+G IP +SN ++L L L +N L GT
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433
Query: 201 IPYA-GHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFL 259
IP + G L +L+ L L N L G +P + L+ L L N L+ E+P+ + N L
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNL 492
Query: 260 EELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQG 319
+ LSNN GEIP L IL L N+FSG IP E+ + L LDL N G
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552
Query: 320 TILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSN--RLSVELPTNVFHNLP 377
TI + Q ++ N ++G + N + + + N + L
Sbjct: 553 TI---PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN-RLS 608
Query: 378 FLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRL 437
+++ ++ G N + L + +N G IPKEI ++ L L+L +N +
Sbjct: 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668
Query: 438 QGTIPYA-GHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPT-NVFHN 495
G+IP G L L LDLS N+L G +P + +L +DLS+N LS +P F
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFET 728
Query: 496 LP 497
P
Sbjct: 729 FP 730
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 3e-18
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALF 82
NI+ N S+ LD+S+N SG IP I +M L +N +N +
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669
Query: 83 GELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDF 130
G +P + L L L L SN G+IP +S+ L E LS N+
Sbjct: 670 GSIPDEVGD-LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 2e-15
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALF 82
+ L++S L+ IP E+G++ L L+L N SGSIP + ++ L ++ +N L
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
Query: 83 GELPPNFCNHLSNLESLFLKSNMFHGKIPST 113
G +P L+ L + L +N G IP
Sbjct: 694 GRIPQAMSA-LTMLTEIDLSNNNLSGPIPEM 723
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 303 bits (779), Expect = 2e-95
Identities = 118/553 (21%), Positives = 192/553 (34%), Gaps = 41/553 (7%)
Query: 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFG 83
T+L++ ++ P L L+ L+L N S + ++L ++ ++N++
Sbjct: 52 TSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK 111
Query: 84 ELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDF-------FWDHTK 136
+ N NL +L L N T + L+E LS N
Sbjct: 112 -IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170
Query: 137 RNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEIS---NLTKLEKLDLQ 193
+ ++L LS N P L L L ++ +++ T + L L
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230
Query: 194 YNKLQGTIPYAG---HLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPT 250
++L T L LDLS N L+ +P L++ L N + L +
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ-HLFS 289
Query: 251 NVFHNLPFLEELYLSNNMFYGEI---------PSDTANCSYLRILVLRFNNFSGAIPKEI 301
+ H L + L L + I L L + N+ G
Sbjct: 290 HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF 349
Query: 302 SNLTKLEKLDLQYNRLQGTILYVG-----HLLQLQWLDLSDNQLSGSLPSFKFNMPLLQF 356
+ L L+ L L + L L L+L+ N++S + L+
Sbjct: 350 TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409
Query: 357 LDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNF--P 414
LDL N + EL + L + E+YLS N + + L+ L+L+
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469
Query: 415 GAIPKEISNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLS--------GSLP 465
+ P L L LDL N + L +L+ LDL N L+ G
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529
Query: 466 SFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRI 525
F + L L+L SN E+P VF +L L+ + L N S N L+
Sbjct: 530 YFLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588
Query: 526 LVVQFNNFSGAIP 538
L +Q N +
Sbjct: 589 LNLQKNLITSVEK 601
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 274 bits (703), Expect = 2e-84
Identities = 122/533 (22%), Positives = 192/533 (36%), Gaps = 48/533 (9%)
Query: 26 LNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGEL 85
+ S L LT +P +L +++ L+L+ N A+ S L S++ N + +L
Sbjct: 9 ADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKL 64
Query: 86 PPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLS 145
P C L L+ L L+ N T + C L E L+L
Sbjct: 65 EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE-------------------LHLM 105
Query: 146 KNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA- 204
N + L L L N S L L++L L NK+Q
Sbjct: 106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 165
Query: 205 --GHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFH--NLPFLE 260
L+ L+LS NQ+ P + L L L++ +L L + +
Sbjct: 166 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIR 225
Query: 261 ELYLSNNMFYGEIPSDTANCSY--LRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQ 318
L LSN+ + + L +L L +NN + + L +LE L+YN +Q
Sbjct: 226 NLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 285
Query: 319 GTILYV-GHLLQLQWLDLSDNQLSGSLPSFKF---------NMPLLQFLDLSSNRLSVEL 368
+ L +++L+L + S+ + L+ L++ N + +
Sbjct: 286 HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP-GI 344
Query: 369 PTNVFHNLPFLEELYLSNNMFYGEIPSDTQ----NCSYLRILVLKFNNFPGAIPKEISNL 424
+N+F L L+ L LSN+ ++ S L IL L N S L
Sbjct: 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404
Query: 425 TKLEKLDLQYNRLQGTIPYA--GHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSN 482
LE LDL N + + L + + LS N+ + +P LQ L L
Sbjct: 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV 464
Query: 483 RLST-ELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFS 534
L + + F L L L LSNN L IL +Q NN +
Sbjct: 465 ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 269 bits (691), Expect = 1e-82
Identities = 111/536 (20%), Positives = 185/536 (34%), Gaps = 56/536 (10%)
Query: 22 RVTALNISGLNLTVTIPSELG--NLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINN 79
+ L +S + EL SSL+ L+LS N P + L + N
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 205
Query: 80 ALFGELPPNFCN--HLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKR 137
L L C +++ +L L ++ +T L+ T+L
Sbjct: 206 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG---LKWTNL------------ 250
Query: 138 NWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKL 197
L LS N A L L++NN + L + L+L+ +
Sbjct: 251 --TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308
Query: 198 QGTIPYA----------GHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLS-A 246
+ +I A L L+ L++ DN + G + + L++L LS++ S
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368
Query: 247 ELPTNVFHNLPF--LEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIP-KEISN 303
L F +L L L L+ N + +L +L L N + +E
Sbjct: 369 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 428
Query: 304 LTKLEKLDLQYNRLQGTILYV-GHLLQLQWLDLSDNQLSG--SLPSFKFNMPLLQFLDLS 360
L + ++ L YN+ + LQ L L L S PS + L LDLS
Sbjct: 429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488
Query: 361 SNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKE 420
+N ++ + ++ L LE L L +N + L + PG
Sbjct: 489 NNNIA-NINDDMLEGLEKLEILDLQHN----------------NLARLWKHANPGGPIYF 531
Query: 421 ISNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDL 479
+ L+ L L+L+ N LF+L+ +DL N L+ S L+ L+L
Sbjct: 532 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNL 591
Query: 480 SSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSG 535
N +++ L EL + N F S +++ S
Sbjct: 592 QKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSS 647
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 263 bits (675), Expect = 3e-80
Identities = 112/521 (21%), Positives = 175/521 (33%), Gaps = 50/521 (9%)
Query: 46 SLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNM 105
S + D S + +P + +++ +N +N L NF S L SL + N
Sbjct: 5 SHEVADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANF-TRYSQLTSLDVGFNT 60
Query: 106 FHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRI 165
P L+ L L N A C+ L
Sbjct: 61 ISKLEPELCQKLPMLKV-------------------LNLQHNELSQLSDKTFAFCTNLTE 101
Query: 166 LVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA-GHLYQLQWLDLSDNQLSGSL 224
L L N+ L LDL +N L T L LQ L LS+N++
Sbjct: 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK 161
Query: 225 PS--FKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTA---N 279
F L+ L+LSSN++ E FH + L L+L+N +
Sbjct: 162 SEELDIFANSSLKKLELSSNQIK-EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELA 220
Query: 280 CSYLRILVLRFNNFSGAIPKEISNL--TKLEKLDLQYNRLQGTILYV-GHLLQLQWLDLS 336
+ +R L L + S L T L LDL YN L L QL++ L
Sbjct: 221 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 280
Query: 337 DNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTN--------VFHNLPFLEELYLSNNM 388
N + + +++L+L + + F L LE L + +N
Sbjct: 281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340
Query: 389 FYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEIS----NLTKLEKLDLQYNRLQGTIPYA 444
G + L+ L L + + + L L+L N++ A
Sbjct: 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400
Query: 445 -GHLFQLQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRLSTELPTNVFHNLPFLEEL 502
L L+ LDL N++ L +++ + + + LS N+ L N F +P L+ L
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ-LTRNSFALVPSLQRL 459
Query: 503 YLSNNMFYG--EIPSDTPNCSYLRILVVQFNNFSGAIPKEI 541
L PS L IL + NN + +
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 286 bits (733), Expect = 3e-89
Identities = 95/573 (16%), Positives = 191/573 (33%), Gaps = 78/573 (13%)
Query: 1 NWNTSSSVCNWT---GITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWF 57
NWN + + W G++ + RVT L++ G + +P +G L+ L+ L L +
Sbjct: 59 NWNFNKELDMWGAQPGVSLNSNG-RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGE 117
Query: 58 SG----SIPASIFNMSSLLSINFINNALFGELPPNFCN-HLSNLESLFLKSNMFHGKIPS 112
P I S + S+L + S+ I
Sbjct: 118 KVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK 177
Query: 113 TLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNN 172
+ + Q+ N + + + LR + +
Sbjct: 178 SSRITLKD-------------------TQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSP 217
Query: 173 FSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA-GHLYQLQWLDLSDNQLSGSLPSFKFKM 231
F E + +Y + T +L L +++ + LP+F +
Sbjct: 218 FVAENICEAWEN-----ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272
Query: 232 PLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFN 291
P +Q ++++ NR + + +D ++I+ + +N
Sbjct: 273 PEMQLINVACNRGIS-----------------GEQLKDDWQALADAPVGEKIQIIYIGYN 315
Query: 292 NF-SGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFN 350
N + + + + KL L+ YN+L+G + G ++L L+L+ NQ++ +F
Sbjct: 316 NLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGF 375
Query: 351 MPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYG-------EIPSDTQNCSYL 403
++ L + N+L ++ + + S N + +
Sbjct: 376 TEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435
Query: 404 RILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA--------GHLFQLQWLDL 455
+ L N + S + L ++L N L + + + L +DL
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495
Query: 456 SDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSN------NM 508
N+L+ F+ +P L +DLS N ++ PT N L+ + N N
Sbjct: 496 RFNKLTKLSDDFRATTLPYLVGIDLSYNSF-SKFPTQPL-NSSTLKGFGIRNQRDAQGNR 553
Query: 509 FYGEIPSDTPNCSYLRILVVQFNNFSGAIPKEI 541
E P C L L + N+ + ++I
Sbjct: 554 TLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI 585
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 262 bits (671), Expect = 4e-80
Identities = 73/478 (15%), Positives = 160/478 (33%), Gaps = 57/478 (11%)
Query: 26 LNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGEL 85
+ N+T + + L+ L+ + + F + + +
Sbjct: 188 IGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSE-----YAQQYKTE 241
Query: 86 PPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLS 145
+ ++L +L + + + K+P+ L + ++ +++ N +
Sbjct: 242 DLKW-DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG-----------ISGE 289
Query: 146 KNMFYGEIPSDIANCSYLRILVLQFNNF-SGAIPKEISNLTKLEKLDLQYNKLQGTIPYA 204
+ + +D ++I+ + +NN + + + + KL L+ YN+L+G +P
Sbjct: 290 QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAF 349
Query: 205 GHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYL 264
G +L L+L+ NQ++ +F ++ L + N+L ++ + +
Sbjct: 350 GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDF 409
Query: 265 SNNMFYG-------EIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRL 317
S N + + + L N S + S + L ++L N L
Sbjct: 410 SYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML 469
Query: 318 QG--------TILYVGHLLQLQWLDLSDNQLSGSLPSFKF-NMPLLQFLDLSSNRLSVEL 368
+ L +DL N+L+ F+ +P L +DLS N S +
Sbjct: 470 TEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFS-KF 528
Query: 369 PTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLE 428
PT N L+ + N + N P+ I+ L
Sbjct: 529 PTQPL-NSSTLKGFGIRNQ------------------RDAQGNRTLREWPEGITLCPSLT 569
Query: 429 KLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLST 486
+L + N ++ + + LD+ DN S+ L ++
Sbjct: 570 QLQIGSNDIR-KVN-EKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQD 625
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 275 bits (705), Expect = 5e-83
Identities = 94/573 (16%), Positives = 180/573 (31%), Gaps = 77/573 (13%)
Query: 1 NWNTSSSVCNWTGITCDV--RTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFS 58
NWN + + W RVT L+++G +P +G L+ L+ L + +
Sbjct: 301 NWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSET 360
Query: 59 GSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHG---------- 108
S + + + F ++ L L + +
Sbjct: 361 VSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD 420
Query: 109 ------------------KIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFY 150
I + +L+ + + F +D+ +W+ Y
Sbjct: 421 SRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480
Query: 151 GEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA------ 204
+N L + L +P + +L +L+ L++ N+
Sbjct: 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRL 540
Query: 205 ----GHLYQLQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSAELPTNVFHNLPFL 259
++Q + N L S KM L LD N++ L F L
Sbjct: 541 ADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA--FGTNVKL 597
Query: 260 EELYLSNNMFYGEIPSDT-ANCSYLRILVLRFNNFSGAIPK--EISNLTKLEKLDLQYNR 316
+L L N EIP D A + L N IP ++ + +D YN+
Sbjct: 598 TDLKLDYNQI-EEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNK 655
Query: 317 LQG------TILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPT 370
+ + + + LS N++ + + LS+N ++ +P
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPE 714
Query: 371 NV-------FHNLPFLEELYLSNNMFYGEIPSD--TQNCSYLRILVLKFNNFPGAIPKEI 421
N + N L + L N + D YL + + +N F + P +
Sbjct: 715 NSLKPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCF-SSFPTQP 772
Query: 422 SNLTKLEKLDLQY------NRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPSFKFKMPLL 474
N ++L+ +++ NR+ P L L + N + + P L
Sbjct: 773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDE--KLTPQL 829
Query: 475 QFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
LD++ N + T+V + + L +
Sbjct: 830 YILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 1e-47
Identities = 63/379 (16%), Positives = 115/379 (30%), Gaps = 45/379 (11%)
Query: 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSG---------SIPASIFNMSSLLSI 74
T + + +P L +L LQ+L+++ N + +
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553
Query: 75 NFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDF---- 130
N L + L L N + + +L + L N
Sbjct: 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEEIP 611
Query: 131 --FWDHTKRNWQQLYLSKNMFYGEIPSD--IANCSYLRILVLQFNNFSGAIPK-----EI 181
F T + L S N IP+ + + + +N +
Sbjct: 612 EDFCAFTD-QVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669
Query: 182 SNLTKLEKLDLQYNKLQGTIPYA-GHLYQLQWLDLSDNQLS-------GSLPSFKFKMPL 233
+ L YN++Q + + LS+N ++ L
Sbjct: 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL 729
Query: 234 LQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRF--- 290
L +DL N+L++ LP+L + +S N F P+ N S L+ +R
Sbjct: 730 LTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRD 788
Query: 291 ---NNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQL-SGSLPS 346
N P I+ L +L + N ++ + QL LD++DN S + S
Sbjct: 789 AEGNRILRQWPTGITTCPSLIQLQIGSNDIRK--VDEKLTPQLYILDIADNPNISIDVTS 846
Query: 347 F-KFNMPLLQFLDLSSNRL 364
+ + L +
Sbjct: 847 VCPYIEAGMYVLLYDKTQD 865
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 267 bits (685), Expect = 2e-82
Identities = 100/537 (18%), Positives = 180/537 (33%), Gaps = 46/537 (8%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALF 82
L++S L + LQ LDLS + ++S L ++ N +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 83 GELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQL 142
F LS+L+ L + K L+E L
Sbjct: 90 SLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKE-------------------L 129
Query: 143 YLSKNMF-YGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLE----KLDLQYNKL 197
++ N+ ++P +N + L L L N ++ L ++ LDL N +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189
Query: 198 QGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRLS-----AELPTN 251
P A +L L L +N S ++ + + L+ L + +
Sbjct: 190 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249
Query: 252 VFHNLPFLEELYLS---NNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLE 308
L L + + +I + + L S +
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQ 307
Query: 309 KLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLS-VE 367
L+L + L L+ L + N+ + ++P L+FLDLS N LS
Sbjct: 308 HLELVNCKFGQ--FPTLKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKG 363
Query: 368 LPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEI-SNLTK 426
+ L+ L LS N + S+ L L + +N + +L
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422
Query: 427 LEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRL 484
L LD+ + + L L+ L ++ N + F + L FLDLS +L
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482
Query: 485 STELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPKEI 541
+L F++L L+ L +S+N F+ + L++L N+ + +E+
Sbjct: 483 -EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 261 bits (670), Expect = 3e-80
Identities = 119/531 (22%), Positives = 178/531 (33%), Gaps = 51/531 (9%)
Query: 27 NISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELP 86
LN IP L S + LDLSFN S F+ L ++ + +
Sbjct: 13 QCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IE 68
Query: 87 PNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSK 146
LS+L +L L N S L++ L +
Sbjct: 69 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK-------------------LVAVE 109
Query: 147 NMFYGEIPSDIANCSYLRILVLQFNNF-SGAIPKEISNLTKLEKLDLQYNKLQGTIPYA- 204
I + L+ L + N S +P+ SNLT LE LDL NK+Q
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
Query: 205 GHLYQLQ----WLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLE 260
L+Q+ LDLS N ++ P FK L L L +N S + L LE
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGA-FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLE 228
Query: 261 ELYLSNNMFYGE------IPSDTANCSYLRILVLRFNN---FSGAIPKEISNLTKLEKLD 311
L F E S L I R + I + LT +
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288
Query: 312 LQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTN 371
L ++ + + Q L+L + + ++ L F
Sbjct: 289 LVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA------F 341
Query: 372 VFHNLPFLEELYLSNNM--FYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEK 429
+LP LE L LS N F G + L+ L L FN + L +LE
Sbjct: 342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEH 400
Query: 430 LDLQYNRLQGTIPYA--GHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTE 487
LD Q++ L+ ++ L L +LD+S + + L+ L ++ N
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460
Query: 488 LPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIP 538
++F L L L LS P+ + S L++L + NNF
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 511
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 258 bits (662), Expect = 4e-79
Identities = 117/531 (22%), Positives = 179/531 (33%), Gaps = 43/531 (8%)
Query: 26 LNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGEL 85
L ++G + LSSLQ L + I ++ +L +N +N +
Sbjct: 81 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140
Query: 86 PPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLS 145
P + ++L+NLE L L SN + L ++ +LSL+ LS
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD---------------LS 185
Query: 146 KNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKE-ISNLTKLEKLDLQYNKLQGTIPYA 204
N P L L L+ N S + K I L LE L + +
Sbjct: 186 LNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244
Query: 205 ----GHLYQLQWLDLSDNQLS------GSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFH 254
L L L + + +L+ + + + L S + F
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FS 301
Query: 255 NLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQY 314
+ L L N F + L F + G +L LE LDL
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLKLKSLKRLT-----FTSNKGGNAFSEVDLPSLEFLDLSR 356
Query: 315 NRLQGTILY---VGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTN 371
N L L++LDLS N + +F + L+ LD + L +
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF-LGLEQLEHLDFQHSNLKQMSEFS 415
Query: 372 VFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEI-SNLTKLEKL 430
VF +L L L +S+ S L +L + N+F +I + L L L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 431 DLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELP 489
DL +L+ P A L LQ L++S N + LQ LD S N + T
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535
Query: 490 TNVFHNLPFLEELYLSNNMFYGEIPSDT--PNCSYLRILVVQFNNFSGAIP 538
+ H L L L+ N F + R L+V+ A P
Sbjct: 536 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP 586
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 175 bits (447), Expect = 3e-48
Identities = 73/360 (20%), Positives = 132/360 (36%), Gaps = 16/360 (4%)
Query: 32 NLTVTIPSELGNLSSLQTLDLSFNW---FSGSIPASIFNMSSLLSINFINNALFGELPPN 88
NL S L L +L + + + I ++++ S + ++ + +
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301
Query: 89 FCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNM 148
+ + L L + F L S KRL TS + F + + + L LS+N
Sbjct: 302 Y---NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358
Query: 149 --FYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA-- 204
F G + L+ L L FN + L +LE LD Q++ L+ ++
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417
Query: 205 GHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYL 264
L L +LD+S + + L+ L ++ N ++F L L L L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477
Query: 265 SNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYV 324
S P+ + S L++L + NNF L L+ LD N + +
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537
Query: 325 --GHLLQLQWLDLSDNQLSGSLPS--FKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLE 380
L +L+L+ N + + F + + L + R+ P++ +P L
Sbjct: 538 LQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD-KQGMPVLS 596
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 256 bits (657), Expect = 3e-78
Identities = 111/547 (20%), Positives = 184/547 (33%), Gaps = 42/547 (7%)
Query: 4 TSSSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPA 63
T+SS C + T N L L IP L +S + L+ SFN
Sbjct: 1 TTSSDQ-----KCIEKEVNKT-YNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNT 51
Query: 64 SIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRET 123
+ + +L ++ + + + L++L L +N + LS K L+
Sbjct: 52 TFSRLINLTFLDLTRCQI-YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH- 109
Query: 124 SLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISN 183
L+ + + N L L L N+ S +
Sbjct: 110 ------------------LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151
Query: 184 LTKLEKLDLQYNKLQGTIPYA-GHLYQLQW--LDLSDNQLSGSLPSFKFKMPLLQFLDLS 240
KL+ LD Q N + L Q L+L+ N ++ + F + Q L+
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFG 210
Query: 241 SNRLSAELPTN-VFHNLPFLEELYLSNNMFYGEIPSDTANCS--YLRILVLRFNNFSGAI 297
+ + + L + P+ + + L+ + F
Sbjct: 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270
Query: 298 PKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFL 357
+ L++LDL L + L L+ L LS N+ N P L L
Sbjct: 271 SNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330
Query: 358 DLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDT--QNCSYLRILVLKFNNFPG 415
+ N +EL T NL L EL LS++ + +N S+L+ L L +N
Sbjct: 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390
Query: 416 AIPKEISNLTKLEKLDLQYNRLQGTIPYA--GHLFQLQWLDLSDNQLSGSLPSFKFKMPL 473
+ +LE LDL + RL+ + +L L+ L+LS + L S +P
Sbjct: 391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450
Query: 474 LQFLDLSSNRLS--TELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFN 531
LQ L+L N TN L LE L LS + + + + N
Sbjct: 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510
Query: 532 NFSGAIP 538
+ +
Sbjct: 511 RLTSSSI 517
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 256 bits (656), Expect = 4e-78
Identities = 111/535 (20%), Positives = 182/535 (34%), Gaps = 30/535 (5%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALF 82
L S L + L +L LDL+ + + L ++ N L
Sbjct: 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL- 93
Query: 83 GELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLN-------DFFWDHT 135
+ + L+ LF L + K L L N +
Sbjct: 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE 153
Query: 136 KRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFN-NFSGAIPKEISNLTKLEKLDLQY 194
+ L N + D+++ L L N N I + + L+
Sbjct: 154 --KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211
Query: 195 NKLQGTIPYAG---HLYQLQWLDLSDNQLSGSLPSFKFKMPL--LQFLDLSSNRLSAELP 249
+ I + L D P+ + ++ ++L + +
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF-NIS 270
Query: 250 TNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEK 309
+N FH L+EL L+ E+PS S L+ LVL N F SN L
Sbjct: 271 SNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329
Query: 310 LDLQYNRLQGTILY--VGHLLQLQWLDLSDNQLSGSLPSFK--FNMPLLQFLDLSSNRLS 365
L ++ N + + + +L L+ LDLS + + S N+ LQ L+LS N
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389
Query: 366 VELPTNVFHNLPFLEELYLSNNMFYGEIPSDT-QNCSYLRILVLKFNNFPGAIPKEISNL 424
L T F P LE L L+ + QN L++L L + + + L
Sbjct: 390 -SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL 448
Query: 425 TKLEKLDLQYNRLQGTIPYAGHLFQ----LQWLDLSDNQLSGSLPSFKFKMPLLQFLDLS 480
L+ L+LQ N + Q L+ L LS LS + ++ +DLS
Sbjct: 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS 508
Query: 481 SNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSG 535
NRL++ +L + L L++N +PS P S R + ++ N
Sbjct: 509 HNRLTS-SSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 216 bits (552), Expect = 4e-63
Identities = 87/474 (18%), Positives = 159/474 (33%), Gaps = 41/474 (8%)
Query: 26 LNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGEL 85
L + +++ + L+ LD N + ++ +++ N
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193
Query: 86 PPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLND---------FFWDHTK 136
+ +SL I L + + D F +
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253
Query: 137 RNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNK 196
+ + + L K+ F+ + S L+ L L + S +P + L+ L+KL L NK
Sbjct: 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANK 312
Query: 197 LQGTIPYA-GHLYQLQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRLSA-ELPTNVF 253
+ + + L L + N L + + + L+ LDLS + + +
Sbjct: 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372
Query: 254 HNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEI-SNLTKLEKLDL 312
NL L+ L LS N C L +L L F + NL L+ L+L
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432
Query: 313 QYNRLQGTILYV-GHLLQLQWLDLSDNQLSG---SLPSFKFNMPLLQFLDLSSNRLSVEL 368
++ L + + L LQ L+L N + + L+ L LS LS +
Sbjct: 433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS-SI 491
Query: 369 PTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLE 428
+ F +L + + LS+N + + L L N+ +P + L++
Sbjct: 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQR 550
Query: 429 KLDLQYNRLQGTIPYA---------------------GHLFQLQWLDLSDNQLS 461
++L+ N L T + L+ + LSD LS
Sbjct: 551 TINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 212 bits (542), Expect = 1e-61
Identities = 80/400 (20%), Positives = 134/400 (33%), Gaps = 15/400 (3%)
Query: 152 EIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA-GHLYQL 210
EIP + + L FN S L L LDL ++ ++L
Sbjct: 26 EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRL 83
Query: 211 QWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFY 270
L L+ N L + L+ L +S + HN LE LYL +N
Sbjct: 84 DTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHIS 142
Query: 271 GEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLE--KLDLQYNRLQGTILYVGHLL 328
L++L + N +++S+L + L+L N + G
Sbjct: 143 SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA 202
Query: 329 QLQWLDLSDNQLSGSLPSFKFNMPL--LQFLDLSSNRLSVELPTNVFHNLPF--LEELYL 384
Q L+ Q + N + L ++ VF L +E + L
Sbjct: 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE-DISPAVFEGLCEMSVESINL 261
Query: 385 SNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA 444
+ F+ + S L+ L L + +P + L+ L+KL L N+ + +
Sbjct: 262 QKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQIS 320
Query: 445 -GHLFQLQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRLST-ELPTNVFHNLPFLEE 501
+ L L + N L + + + L+ LDLS + + T + NL L+
Sbjct: 321 ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS 380
Query: 502 LYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPKEI 541
L LS N C L +L + F +
Sbjct: 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 1e-42
Identities = 75/354 (21%), Positives = 127/354 (35%), Gaps = 38/354 (10%)
Query: 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNAL 81
V ++N+ + S LQ LDL+ S +P+ + +S+L + N
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSAN-K 312
Query: 82 FGELPPNFCNHLSNLESLFLKSNMFHGKIPS-TLSSCKRLRETSLSLNDFFWDHTKRNW- 139
F L ++ +L L +K N ++ + L + + LRE LS +D
Sbjct: 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372
Query: 140 ------QQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEI-SNLTKLEKLDL 192
Q L LS N C L +L L F + NL L+ L+L
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432
Query: 193 QYNKLQGTIPYA-GHLYQLQWLDLSDNQLSG---SLPSFKFKMPLLQFLDLSSNRLSAEL 248
++ L + L LQ L+L N + + L+ L LS LS +
Sbjct: 433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS-SI 491
Query: 249 PTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLE 308
+ F +L + + LS+N ++ + L L N+ S +P + L++
Sbjct: 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQR 550
Query: 309 KLDLQYNRLQGTI---------------------LYVGHLLQLQWLDLSDNQLS 341
++L+ N L T + L+ + LSD LS
Sbjct: 551 TINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 231 bits (592), Expect = 4e-72
Identities = 92/325 (28%), Positives = 126/325 (38%), Gaps = 57/325 (17%)
Query: 1 NWNTSSSVCN--WTGITCDVRT--YRVTALNISGLNL--TVTIPSELGNLSSLQTLDLS- 53
+W ++ CN W G+ CD T YRV L++SGLNL IPS L NL L L +
Sbjct: 26 SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG 85
Query: 54 FNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPST 113
N G IP +I L+ L L++ G IP
Sbjct: 86 INNLVGPIPPAIAK-------------------------LTQLHYLYITHTNVSGAIPDF 120
Query: 114 LSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNF 173
LS K L L S N G +P I++ L + N
Sbjct: 121 LSQIKTL-------------------VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161
Query: 174 SGAIPKEISNLTKL-EKLDLQYNKLQGTIPYA-GHLYQLQWLDLSDNQLSGSLPSFKFKM 231
SGAIP + +KL + + N+L G IP +L L ++DLS N L G
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSD 220
Query: 232 PLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFN 291
Q + L+ N L+ +L L L L NN YG +P +L L + FN
Sbjct: 221 KNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278
Query: 292 NFSGAIPKEISNLTKLEKLDLQYNR 316
N G IP+ NL + + N+
Sbjct: 279 NLCGEIPQG-GNLQRFDVSAYANNK 302
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 215 bits (550), Expect = 7e-66
Identities = 82/303 (27%), Positives = 122/303 (40%), Gaps = 27/303 (8%)
Query: 90 CNHLSN-LESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNM 148
LS+ L + + + G + T + R+ L LS
Sbjct: 21 PTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRV-------------------NNLDLSGLN 61
Query: 149 FYGE--IPSDIANCSYLRILVLQ-FNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA- 204
IPS +AN YL L + NN G IP I+ LT+L L + + + G IP
Sbjct: 62 LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121
Query: 205 GHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYL 264
+ L LD S N LSG+LP +P L + NR+S +P + + +
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Query: 265 SNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYV 324
S N G+IP AN + L + L N G + +K+ L N L + V
Sbjct: 182 SRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV 240
Query: 325 GHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYL 384
G L LDL +N++ G+LP + L L++S N L E+P NL +
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAY 298
Query: 385 SNN 387
+NN
Sbjct: 299 ANN 301
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 210 bits (537), Expect = 5e-64
Identities = 89/354 (25%), Positives = 134/354 (37%), Gaps = 61/354 (17%)
Query: 176 AIPKEISNLTKL----EKLDLQYNKLQGTIP-YAGHLYQLQWLDLSDNQLSGSLPSFKFK 230
I K++ N T L D G + Y++ LDLS L P
Sbjct: 13 QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP----- 67
Query: 231 MPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSN-NMFYGEIPSDTANCSYLRILVLR 289
+P+++ NLP+L LY+ N G IP A + L L +
Sbjct: 68 -----------------IPSSLA-NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109
Query: 290 FNNFSGAIPKEISNLTKLEKLDLQYNRLQGTI-LYVGHLLQLQWLDLSDNQLSGSLPSFK 348
N SGAIP +S + L LD YN L GT+ + L L + N++SG++P
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169
Query: 349 FNMP-LLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILV 407
+ L + +S NRL+ G+IP N + L +
Sbjct: 170 GSFSKLFTSMTISRNRLT-------------------------GKIPPTFANLN-LAFVD 203
Query: 408 LKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSF 467
L N G + +K+ L N L + G L LDL +N++ G+LP
Sbjct: 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG 263
Query: 468 KFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCS 521
++ L L++S N L E+P NL + +NN P P C+
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNKCLCGSPL--PACT 313
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 200 bits (511), Expect = 3e-60
Identities = 72/282 (25%), Positives = 102/282 (36%), Gaps = 32/282 (11%)
Query: 264 LSNNMFYGEIPSDTANCSYLRILVLRFNNFSG--AIPKEISNLTKLEKLDLQ-YNRLQGT 320
N + G + + L L N IP ++NL L L + N L G
Sbjct: 33 CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP 92
Query: 321 I-LYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFL 379
I + L QL +L ++ +SG++P F + L
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDF-------------------------LSQIKTL 127
Query: 380 EELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKL-EKLDLQYNRLQ 438
L S N G +P + L + N GAIP + +KL + + NRL
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 439 GTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPF 498
G IP L ++DLS N L G Q + L+ N L+ +L
Sbjct: 188 GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKN 245
Query: 499 LEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPKE 540
L L L NN YG +P +L L V FNN G IP+
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 150 bits (382), Expect = 1e-41
Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 25/206 (12%)
Query: 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLL-SINFINNALF 82
L+ S L+ T+P + +L +L + N SG+IP S + S L S+ N L
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 83 GELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQL 142
G++PP F N NL + L NM G S K Q++
Sbjct: 188 GKIPPTFAN--LNLAFVDLSRNMLEGDASVLFGSDKNT-------------------QKI 226
Query: 143 YLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIP 202
+L+KN ++ + L L L+ N G +P+ ++ L L L++ +N L G IP
Sbjct: 227 HLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Query: 203 YAGHLYQLQWLDLSDNQL--SGSLPS 226
G+L + ++N+ LP+
Sbjct: 286 QGGNLQRFDVSAYANNKCLCGSPLPA 311
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 1e-35
Identities = 48/175 (27%), Positives = 69/175 (39%), Gaps = 5/175 (2%)
Query: 371 NVFHNLPFLEELYLSNNMFYGE--IPSDTQNCSYLRILVL-KFNNFPGAIPKEISNLTKL 427
+ + L LS IPS N YL L + NN G IP I+ LT+L
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103
Query: 428 EKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLST 486
L + + + G IP + L LD S N LSG+LP +P L + NR+S
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 487 ELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPKEI 541
+P + + +S N G+IP N + L + + N G
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLF 217
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 2e-31
Identities = 48/163 (29%), Positives = 70/163 (42%), Gaps = 6/163 (3%)
Query: 384 LSNNMFYGEIPSDTQNCSYLRILVLKFNNFPG--AIPKEISNLTKLEKLDLQ-YNRLQGT 440
N + G + + L L N P IP ++NL L L + N L G
Sbjct: 33 CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP 92
Query: 441 IPYA-GHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFL 499
IP A L QL +L ++ +SG++P F ++ L LD S N LS LP ++ +LP L
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS-SLPNL 151
Query: 500 EELYLSNNMFYGEIPSDTPNCSYL-RILVVQFNNFSGAIPKEI 541
+ N G IP + S L + + N +G IP
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 239 bits (613), Expect = 7e-72
Identities = 110/532 (20%), Positives = 175/532 (32%), Gaps = 50/532 (9%)
Query: 26 LNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGEL 85
L+ +P ++ SS + +DLSFN S N S L ++ + +
Sbjct: 16 YQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-I 71
Query: 86 PPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLS 145
+ L +L +L L N P + S L L
Sbjct: 72 EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN-------------------LVAV 112
Query: 146 KNMFYGEIPSDIANCSYLRILVLQFNNFSGA-IPKEISNLTKLEKLDLQYNKLQGTIPYA 204
+ I L+ L + N +P SNLT L +DL YN +Q
Sbjct: 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172
Query: 205 -----GHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFL 259
+ LD+S N + + F+ L L L N S+ + NL L
Sbjct: 173 LQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGL 231
Query: 260 EELYLSNNMFYGEIPSDTANCSYLRILV--------LRFNNFSGAIPKEISNLTKLEKLD 311
L F E + S + L L + N + L + +
Sbjct: 232 HVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMS 291
Query: 312 LQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTN 371
L ++ + V + Q L + QL P+ ++P L+ L L+ N+ S+
Sbjct: 292 LAGVSIK-YLEDVPKHFKWQSLSIIRCQLK-QFPTL--DLPFLKSLTLTMNKGSISFK-- 345
Query: 372 VFHNLPFLEELYLSNNMFYGEIPSDTQN--CSYLRILVLKFNNFPGAIPKEISNLTKLEK 429
LP L L LS N + + LR L L FN + L +L+
Sbjct: 346 -KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQH 403
Query: 430 LDLQYNRLQGTIPYA--GHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTE 487
LD Q++ L+ ++ L +L +LD+S + L L ++ N
Sbjct: 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463
Query: 488 LPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPK 539
+NVF N L L LS L++L + NN
Sbjct: 464 TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 238 bits (608), Expect = 4e-71
Identities = 99/531 (18%), Positives = 178/531 (33%), Gaps = 47/531 (8%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALF 82
+++S L + N S LQ LDLS + + L ++ N +
Sbjct: 34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI- 92
Query: 83 GELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQL 142
P + L++LE+L + L++ L
Sbjct: 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK-------------------L 133
Query: 143 YLSKNMFYG-EIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKL----EKLDLQYNKL 197
++ N + ++P+ +N + L + L +N ++ L + LD+ N +
Sbjct: 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI 193
Query: 198 QGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRLS-----AELPTN 251
A +L L L N S ++ + + L L +
Sbjct: 194 DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPS 253
Query: 252 VFHNLPFL--EELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEK 309
+ L + +E L+ + + + + + L + +++ K +
Sbjct: 254 IMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQS 311
Query: 310 LDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELP 369
L + +L+ L L+ L L+ N+ S S +P L +LDLS N LS
Sbjct: 312 LSIIRCQLKQ--FPTLDLPFLKSLTLTMNKGSISFKKV--ALPSLSYLDLSRNALS-FSG 366
Query: 370 TNVFHNL--PFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKE-ISNLTK 426
+ +L L L LS N + ++ L+ L + + +L K
Sbjct: 367 CCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425
Query: 427 LEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRL 484
L LD+ Y + L L L ++ N + S F L FLDLS +L
Sbjct: 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485
Query: 485 STELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSG 535
++ VF L L+ L +S+N S L L FN
Sbjct: 486 -EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 202 bits (517), Expect = 4e-58
Identities = 92/459 (20%), Positives = 160/459 (34%), Gaps = 32/459 (6%)
Query: 26 LNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSG-SIPASIFNMSSLLSINFINNALFGE 84
L L +G L +L+ L+++ N+ +PA N+++L+ ++ N +
Sbjct: 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI-QT 167
Query: 85 LPPNFCNHLSNLESLFLKSNMFH---GKIPSTLSSCKRLRETSLSLNDFFWDHTK----- 136
+ N L + L +M I +L E +L N + K
Sbjct: 168 ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQN 227
Query: 137 -RNWQQLYLSKNMFYGEIPSDIANCSYLRILV--------LQFNNFSGAIPKEISNLTKL 187
L F E +I S + L L + N + L +
Sbjct: 228 LAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANV 287
Query: 188 EKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAE 247
+ L ++ + ++ Q L + QL P+ P L+ L L+ N+ S
Sbjct: 288 SAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQLK-QFPTLDL--PFLKSLTLTMNKGSIS 343
Query: 248 LPTNVFHNLPFLEELYLSNNMFYGEIPSDTAN--CSYLRILVLRFNNFSGAIPKEISNLT 305
LP L L LS N ++ + LR L L FN + L
Sbjct: 344 FK---KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLE 399
Query: 306 KLEKLDLQYNRLQGTILYV--GHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNR 363
+L+ LD Q++ L+ + L +L +LD+S + L L ++ N
Sbjct: 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459
Query: 364 LSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISN 423
+NVF N L L LS L++L + NN +
Sbjct: 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519
Query: 424 LTKLEKLDLQYNRLQGTIPYAGHLF-QLQWLDLSDNQLS 461
L L LD +NR++ + H L + +L++N ++
Sbjct: 520 LYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 149 bits (379), Expect = 5e-39
Identities = 64/325 (19%), Positives = 111/325 (34%), Gaps = 33/325 (10%)
Query: 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNAL 81
+ ++ N + L+++ + L+ S + S++ I L
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV--SIKYLEDVPKHFKWQSLSIIRCQL 319
Query: 82 FGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQ 141
+ P L L+SL L N G I + L
Sbjct: 320 -KQFPTLD---LPFLKSLTLTMN--KGSISFKKVALPSLSY------------------- 354
Query: 142 LYLSKNMFY--GEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQG 199
L LS+N G + LR L L FN + L +L+ LD Q++ L+
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKR 413
Query: 200 TIPYA--GHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLP 257
++ L +L +LD+S + L L ++ N +NVF N
Sbjct: 414 VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473
Query: 258 FLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRL 317
L L LS L++L + NN + L L LD +NR+
Sbjct: 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533
Query: 318 QGTILYVGHLL-QLQWLDLSDNQLS 341
+ + + H L + +L++N ++
Sbjct: 534 ETSKGILQHFPKSLAFFNLTNNSVA 558
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 206 bits (526), Expect = 1e-59
Identities = 117/549 (21%), Positives = 185/549 (33%), Gaps = 65/549 (11%)
Query: 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFG 83
LN IP L S + LDLSFN S F+ L ++ +
Sbjct: 10 ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-Q 65
Query: 84 ELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLY 143
+ LS+L +L L N S L++ L
Sbjct: 66 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK-------------------LV 106
Query: 144 LSKNMFYGEIPSDIANCSYLRILVLQFNNF-SGAIPKEISNLTKLEKLDLQYNKLQGTIP 202
+ I + L+ L + N S +P+ SNLT LE LDL NK+Q
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166
Query: 203 YA-GHLYQLQW----LDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLP 257
L+Q+ LDLS N ++ + FK L L L +N S + L
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLA 225
Query: 258 FLEELYLSNNMFYG-----EIPSDT-ANCSYLRILVLRFN---NFSGAIPKEISNLTKLE 308
LE L F + L I R + I + LT +
Sbjct: 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285
Query: 309 KLDLQYNRLQGTILYVGHLLQLQWLDLSDNQL----SGSLPSFK---------------F 349
L ++ + + Q L+L + + + L S K
Sbjct: 286 SFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 344
Query: 350 NMPLLQFLDLSSNRLS-VELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVL 408
++P L+FLDLS N LS + L+ L LS N + S+ L L
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDF 403
Query: 409 KFNNFPGAIPKEI-SNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPS 466
+ +N + +L L LD+ + + L L+ L ++ N +
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463
Query: 467 FKF-KMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRI 525
F ++ L FLDLS +L L F++L L+ L +++N + L+
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522
Query: 526 LVVQFNNFS 534
+ + N +
Sbjct: 523 IWLHTNPWD 531
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 195 bits (497), Expect = 1e-55
Identities = 103/525 (19%), Positives = 175/525 (33%), Gaps = 62/525 (11%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALF 82
L++S L + LQ LDLS + ++S L ++ N +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI- 88
Query: 83 GELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQL 142
L + LS+L+ L + K L+E L
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE-------------------L 129
Query: 143 YLSKNMF-YGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLE----KLDLQYNKL 197
++ N+ ++P +N + L L L N ++ L ++ LDL N +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189
Query: 198 QGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLS-----AELPTN 251
P A +L L L +N S ++ + L+ L + +
Sbjct: 190 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249
Query: 252 VFHNLPFLEELYL---SNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEI------- 301
L L + + +I + + L
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHL 309
Query: 302 ------------SNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSG-SLPSFK 348
L L++L N+ V L L++LDLS N LS S
Sbjct: 310 ELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQS 368
Query: 349 F-NMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDT-QNCSYLRIL 406
L++LDLS N + + +N F L LE L ++ + L L
Sbjct: 369 DFGTTSLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426
Query: 407 VLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA--GHLFQLQWLDLSDNQLSGSL 464
+ + A + L+ LE L + N Q L L +LDLS QL
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486
Query: 465 PSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMF 509
P+ + LQ L+++SN+L + +P +F L L++++L N +
Sbjct: 487 PTAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTNPW 530
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 3e-42
Identities = 94/464 (20%), Positives = 166/464 (35%), Gaps = 36/464 (7%)
Query: 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWF-SGSIPASIFNMSSLLSINFINNALF 82
L NL +G+L +L+ L+++ N S +P N+++L ++ +N +
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Query: 83 GELPPNFCNHLSNLESLFLKSNMFH---GKIPSTLSSCKRLRETSLSLN--------DFF 131
+ L + L L ++ I RL + +L N
Sbjct: 163 -SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCI 221
Query: 132 WDHTKRNWQQLYLSKNMFYGEI----PSDIANCSYLRILVL---QFNNFSGAIPKEISNL 184
+L L + G + S + L I + + I + L
Sbjct: 222 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL 281
Query: 185 TKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRL 244
T + L ++ + + + Q L+L + + P+ K K L+ L +SN+
Sbjct: 282 TNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFG-QFPTLKLKS--LKRLTFTSNKG 337
Query: 245 SAELPTNVFHNLPFLEELYLSNNM--FYGEIPSDTANCSYLRILVLRFNNFSGAIPKEIS 302
+LP LE L LS N F G + L+ L L FN +
Sbjct: 338 GN---AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL 393
Query: 303 NLTKLEKLDLQYNRLQGTILYVG---HLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDL 359
L +LE LD Q++ L+ + L L +LD+S + + L+ L +
Sbjct: 394 GLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452
Query: 360 SSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPK 419
+ N ++F L L L LS P+ + S L++L + N
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512
Query: 420 EISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGS 463
LT L+K+ L N + P +L +WL+ + + GS
Sbjct: 513 IFDRLTSLQKIWLHTNPWDCSCPRIDYL--SRWLNKNSQKEQGS 554
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 198 bits (504), Expect = 4e-55
Identities = 107/540 (19%), Positives = 188/540 (34%), Gaps = 67/540 (12%)
Query: 15 TCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIF-NMSSLLS 73
+C NLT +P L++ + L LSFN+ ++ AS F + L
Sbjct: 1 SCSFDGRIA---FYRFCNLT-QVPQ---VLNTTERLLLSFNYIR-TVTASSFPFLEQLQL 52
Query: 74 INFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWD 133
+ + + +L NL L L S+ + P L E L
Sbjct: 53 LELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGL--- 109
Query: 134 HTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSG-AIPKEISNLTKLEKLDL 192
L F N L L L N + L L+ +D
Sbjct: 110 ------SDAVLKDGYF--------RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155
Query: 193 QYNKLQGTIPYA---GHLYQLQWLDLSDNQLSGSLPSF------KFKMPLLQFLDLSSNR 243
N++ + L + L+ N L + F+ +L+ LD+S N
Sbjct: 156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG 215
Query: 244 LSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISN 303
+ ++ N + + + L ++ F+N +
Sbjct: 216 WTVDITGNFSNAISKSQAFSLILAH-------------HIMGAGFGFHNIKDPDQNTFAG 262
Query: 304 LTK--LEKLDLQYNRLQG-TILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLS 360
L + + LDL + + L L+ L+L+ N+++ + + LQ L+LS
Sbjct: 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322
Query: 361 SNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKE 420
N L EL ++ F+ LP + + L N + L+ L L+ N
Sbjct: 323 YNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-----TT 376
Query: 421 ISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSG-SLPSFKFKMPLLQFLDL 479
I + + + L N+L T+P + LS+N+L + F ++P LQ L L
Sbjct: 377 IHFIPSIPDIFLSGNKLV-TLPK--INLTANLIHLSENRLENLDILYFLLRVPHLQILIL 433
Query: 480 SSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTP-----NCSYLRILVVQFNNFS 534
+ NR S+ P LE+L+L NM ++ S+L++L + N +
Sbjct: 434 NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 194 bits (495), Expect = 8e-54
Identities = 113/496 (22%), Positives = 181/496 (36%), Gaps = 29/496 (5%)
Query: 26 LNISGLNLTVTI--PSELGNLSSLQTLDLSFNWFSGSIPASIF-NMSSLLSINFINNALF 82
L + L+ + NL +L LDLS N F ++SL SI+F +N +F
Sbjct: 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161
Query: 83 GELPPNFCN-HLSNLESLFLKSNMFHGKIPSTLSSC-KRLRETSLSLNDFFWDHTKRNWQ 140
L L +N + ++ C R L + D
Sbjct: 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDV--SGNGWTVD 219
Query: 141 QLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTK--LEKLDLQYNKLQ 198
N + ++ F+N + L + + LDL + +
Sbjct: 220 ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF 279
Query: 199 GTIPYA-GHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLP 257
L L+ L+L+ N+++ + + LQ L+LS N L EL ++ F+ LP
Sbjct: 280 SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLP 338
Query: 258 FLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRL 317
+ + L N L+ L LR N + I + + + L N+L
Sbjct: 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKL 393
Query: 318 QGTILYVGHLLQLQWLDLSDNQLSG-SLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNL 376
L + LS+N+L + F +P LQ L L+ NR S
Sbjct: 394 VT---LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN 450
Query: 377 PFLEELYLSNNMF----YGEIPSDT-QNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLD 431
P LE+L+L NM E+ D + S+L++L L N P S+LT L L
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510
Query: 432 LQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTN 491
L NRL + + L+ LD+S NQL P L LD++ N+ E +
Sbjct: 511 LNSNRLT-VLSHNDLPANLEILDISRNQLLAPNPDV---FVSLSVLDITHNKFICECELS 566
Query: 492 VFHNLPFLEELYLSNN 507
F N + ++
Sbjct: 567 TFINWLNHTNVTIAGP 582
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 6e-32
Identities = 87/394 (22%), Positives = 145/394 (36%), Gaps = 42/394 (10%)
Query: 3 NTSSSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNL--SSLQTLDLSFNWFSGS 60
S+ + + + + + N+ + L SS++ LDLS + S
Sbjct: 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-S 280
Query: 61 IPASIF-NMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKR 119
+ + +F + L +N N + ++ L NL+ L L N+ S +
Sbjct: 281 LNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK 339
Query: 120 LRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPK 179
+ + L KN L+ L L+ N +
Sbjct: 340 VAY-------------------IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT----- 375
Query: 180 EISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSG-SLPSFKFKMPLLQFLD 238
I + + + L NKL T+P + LS+N+L + F ++P LQ L
Sbjct: 376 TIHFIPSIPDIFLSGNKLV-TLPK--INLTANLIHLSENRLENLDILYFLLRVPHLQILI 432
Query: 239 LSSNRLSAELPTNVFHNLPFLEELYLSNNMF----YGEIPSDT-ANCSYLRILVLRFNNF 293
L+ NR S+ P LE+L+L NM E+ D S+L++L L N
Sbjct: 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492
Query: 294 SGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPL 353
+ P S+LT L L L NRL + + L+ LD+S NQL P
Sbjct: 493 NSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPANLEILDISRNQLLAPNPDV---FVS 548
Query: 354 LQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNN 387
L LD++ N+ E + F N + ++
Sbjct: 549 LSVLDITHNKFICECELSTFINWLNHTNVTIAGP 582
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 180 bits (458), Expect = 3e-50
Identities = 98/534 (18%), Positives = 191/534 (35%), Gaps = 60/534 (11%)
Query: 26 LNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGEL 85
+ + T +IPS L +++++LDLSFN + + ++L + ++ + +
Sbjct: 10 CDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI-NTI 65
Query: 86 PPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLS 145
+ L +LE L L N S L+ L L
Sbjct: 66 EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY-------------------LNLM 106
Query: 146 KNMFYG-EIPSDIANCSYLRILVLQFNNFSGAIPKE-ISNLTKLEKLDLQYNKLQGTIPY 203
N + + S N + L+ L + I + + LT L +L+++ L+
Sbjct: 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166
Query: 204 A-GHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEEL 262
+ + + L L ++ + L F + +++L+L L+ + +
Sbjct: 167 SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPM 225
Query: 263 YLSNN----------MFYGEIPSDTANCSYLRILVLRFNN---FSGAIPKEISNLTKLEK 309
++ S + N F+ + +S L K+E
Sbjct: 226 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVET 285
Query: 310 LDLQYNRLQGTILYV------GHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNR 363
+ ++ + L+ L +++ + + ++++ SF ++ L+FLDLS N
Sbjct: 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL 345
Query: 364 LSVELPTN--VFHNLPFLEELYLSNNMFY--GEIPSDTQNCSYLRILVLKFNNFPGAIPK 419
+ E N P L+ L LS N + L L + N F +P
Sbjct: 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPD 404
Query: 420 EISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDL 479
K+ L+L ++ + L+ LD+S+N L SF +P LQ L +
Sbjct: 405 SCQWPEKMRFLNLSSTGIR-VVK-TCIPQTLEVLDVSNNNLD----SFSLFLPRLQELYI 458
Query: 480 SSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNF 533
S N+L T LP P L + +S N + L+ + + N +
Sbjct: 459 SRNKLKT-LPDASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 1e-44
Identities = 86/409 (21%), Positives = 155/409 (37%), Gaps = 30/409 (7%)
Query: 152 EIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA-GHLYQL 210
IPS + + ++ L L FN + ++ L+ L L+ +++ A L L
Sbjct: 19 SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76
Query: 211 QWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMF 269
+ LDLSDN LS SL S F + L++L+L N T++F NL L+ L + N
Sbjct: 77 EHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135
Query: 270 YGEIPSDT-ANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLL 328
+ EI A + L L ++ + + + ++ + L L + + +L
Sbjct: 136 FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADIL 195
Query: 329 -QLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSV-----------------ELPT 370
+++L+L D L+ S + + + R SV EL
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255
Query: 371 NVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKL 430
F + + + +R L + + S L K++++
Sbjct: 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315
Query: 431 DLQYNRLQGTIPYAG-HLFQLQWLDLSDNQLSGSL---PSFKFKMPLLQFLDLSSNRLST 486
++ +++ HL L++LDLS+N + + K P LQ L LS N L +
Sbjct: 316 TVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS 375
Query: 487 -ELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFS 534
+ + L L L +S N F +P +R L +
Sbjct: 376 MQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR 423
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 2e-40
Identities = 79/437 (18%), Positives = 153/437 (35%), Gaps = 22/437 (5%)
Query: 34 TVTIPSELGNLSSLQTLDLSFNWFSGSIPASIF-NMSSLLSINFINNALFGELPPNFCNH 92
T+ + S NL++LQTL + I F ++SL + +L
Sbjct: 112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL-RNYQSQSLKS 170
Query: 93 LSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGE 152
+ ++ L L + + +R L + S
Sbjct: 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230
Query: 153 IPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAG-HLYQLQ 211
S + + S+ +L L E + T D ++ ++
Sbjct: 231 RGSVLTDESFNELLKL-LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR 289
Query: 212 WLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYG 271
L + L L + + ++ + + ++++ +P + +L LE L LS N+
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVE 348
Query: 272 EIPSDTA---NCSYLRILVLRFNNFS--GAIPKEISNLTKLEKLDLQYNRLQGTILYVGH 326
E ++A L+ LVL N+ + + L L LD+ N
Sbjct: 349 EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQW 408
Query: 327 LLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSN 386
++++L+LS + + + L+ LD+S+N L + LP L+ELY+S
Sbjct: 409 PEKMRFLNLSSTGIR-VVKTCIPQT--LEVLDVSNNNL-----DSFSLFLPRLQELYISR 460
Query: 387 NMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGH 446
N +P + L ++ + N LT L+K+ L N + P
Sbjct: 461 NKLK-TLPDAS-LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI-- 516
Query: 447 LFQLQWLDLSDNQLSGS 463
+ +WL+ + + GS
Sbjct: 517 DYLSRWLNKNSQKEQGS 533
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 1e-39
Identities = 92/475 (19%), Positives = 173/475 (36%), Gaps = 66/475 (13%)
Query: 26 LNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIF-NMSSLLSINFINNALFGE 84
L++S +L+ S G LSSL+ L+L N + S+F N+++L ++ N F E
Sbjct: 79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE 138
Query: 85 LPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLN-------DFFWDHTK- 136
+ L++L L +K+ +L S + + +L L+ F +
Sbjct: 139 IRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSV 198
Query: 137 -----RNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSG--AIPKEISNLTKLEK 189
R+ + + S R VL +F+ + + I L+++E
Sbjct: 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258
Query: 190 LDLQYNKLQGTIPYAG---------HLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLS 240
D N L P ++ L + L L + + ++ + +
Sbjct: 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318
Query: 241 SNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTA---NCSYLRILVLRFNNFS--G 295
++++ +P + +L LE L LS N+ E ++A L+ LVL N+
Sbjct: 319 NSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377
Query: 296 AIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQ 355
+ + L L LD+ N ++++L+LS + + + L+
Sbjct: 378 KTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQT--LE 434
Query: 356 FLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPG 415
LD+S+N L + LP L+ELY+S N ++ L +
Sbjct: 435 VLDVSNNNL-----DSFSLFLPRLQELYISRN----------------KLKTLPDASL-- 471
Query: 416 AIPKEISNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPSFKF 469
L + + N+L+ L LQ + L N S P +
Sbjct: 472 --------FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 518
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 2e-27
Identities = 54/323 (16%), Positives = 112/323 (34%), Gaps = 24/323 (7%)
Query: 232 PLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFN 291
D S + +P+ + ++ L LS N D C+ L++L+L+ +
Sbjct: 5 DASGVCDGRSRSFT-SIPSGLTAA---MKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60
Query: 292 NFSGAIPKEISNLTKLEKLDLQYNRLQG-TILYVGHLLQLQWLDLSDNQLSGSLPSFKF- 349
+ +L LE LDL N L + + G L L++L+L N + F
Sbjct: 61 RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120
Query: 350 NMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLK 409
N+ LQ L + + E+ F L L EL + ++ + L L
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180
Query: 410 FNNFPGAIPKEISNLTKLEKLDLQYNRLQ----GTIPYAGHLFQLQWLDLSDNQLSG--- 462
+ + L+ + L+L+ L +P ++ L + L+
Sbjct: 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240
Query: 463 ----SLPSFKFKMPLLQFLDLSSNRL-------STELPTNVFHNLPFLEELYLSNNMFYG 511
L + ++ ++F D + N L S + + L++ +
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300
Query: 512 EIPSDTPNCSYLRILVVQFNNFS 534
++ + ++ + V+ +
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVF 323
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 95.6 bits (238), Expect = 5e-21
Identities = 39/208 (18%), Positives = 75/208 (36%), Gaps = 12/208 (5%)
Query: 333 LDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGE 392
D + S+PS ++ LDLS N+++ + L+ L L ++
Sbjct: 10 CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRI-NT 64
Query: 393 IPSDT-QNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAG---HLF 448
I D + L L L N+ L+ L+ L+L N Q T+ +L
Sbjct: 65 IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLFPNLT 123
Query: 449 QLQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
LQ L + + + + F + L L++ + L + ++ + L L +
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL-RNYQSQSLKSIRDIHHLTLHLS 182
Query: 508 MFYGEIPSDTPNCSYLRILVVQFNNFSG 535
+ S +R L ++ N +
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLAR 210
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 93.3 bits (232), Expect = 3e-20
Identities = 55/379 (14%), Positives = 111/379 (29%), Gaps = 64/379 (16%)
Query: 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNAL-- 81
L I L+L L ++ + L L + + + +SS+ + + L
Sbjct: 151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210
Query: 82 -----FGELPPNFCNHLSNLESLFLKSNMFHG--KIPSTLSSCKRLRETSLSLNDFFWDH 134
+ L F+ K+ + + +LN +
Sbjct: 211 FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN 270
Query: 135 TKRNW-------------QQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFS------- 174
+ ++L++ + + ++ + + ++ + ++ +
Sbjct: 271 PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 330
Query: 175 --------------------GAIPKEISNLTKLEKLDLQYNKLQGTIPYAG---HLYQLQ 211
L+ L L N L+ L L
Sbjct: 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT 390
Query: 212 WLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYG 271
LD+S N S ++FL+LSS + + T + L E L +SNN
Sbjct: 391 SLDISRNTFHPMPDSC-QWPEKMRFLNLSSTGIR-VVKTCIPQTL---EVLDVSNNNL-D 444
Query: 272 EIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYV-GHLLQL 330
L+ L + N +P + S L + + N+L+ + L L
Sbjct: 445 SFSLFLPR---LQELYISRNKLK-TLP-DASLFPVLLVMKISRNQLKSVPDGIFDRLTSL 499
Query: 331 QWLDLSDNQLSGSLPSFKF 349
Q + L N S P +
Sbjct: 500 QKIWLHTNPWDCSCPRIDY 518
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 2e-17
Identities = 56/249 (22%), Positives = 93/249 (37%), Gaps = 49/249 (19%)
Query: 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNAL 81
+V + + + + S +L SL+ LDLS N ++ N+A
Sbjct: 311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN--------------LMVEEYLKNSAC 356
Query: 82 FGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQ 141
G P +L++L L N + T L +L
Sbjct: 357 KGAWP--------SLQTLVLSQNHLR-SMQKTGEILLTL--KNL--------------TS 391
Query: 142 LYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTI 201
L +S+N F +P +R L L + I LE LD+ N L +
Sbjct: 392 LDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD-SF 446
Query: 202 PYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEE 261
L +LQ L +S N+L +LP P+L + +S N+L +P +F L L++
Sbjct: 447 S--LFLPRLQELYISRNKLK-TLPDASL-FPVLLVMKISRNQLK-SVPDGIFDRLTSLQK 501
Query: 262 LYLSNNMFY 270
++L N +
Sbjct: 502 IWLHTNPWD 510
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 2e-49
Identities = 99/457 (21%), Positives = 168/457 (36%), Gaps = 54/457 (11%)
Query: 70 SLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLND 129
L S + ++ + L+ L + + ++
Sbjct: 2 PLGSATITQDTPINQIFTD--TALAEKMKTVLGKTNVTDTVS--QTDLDQVTT------- 50
Query: 130 FFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEK 189
L + + + + L + N + P + NLTKL
Sbjct: 51 ------------LQADRL--GIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVD 94
Query: 190 LDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELP 249
+ + N++ I +L L L L +NQ++ + K + L L+LSSN +S ++
Sbjct: 95 ILMNNNQIAD-ITPLANLTNLTGLTLFNNQIT-DIDPLK-NLTNLNRLELSSNTIS-DIS 150
Query: 250 TNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEK 309
L L++L N + AN + L L + N S ++ LT LE
Sbjct: 151 A--LSGLTSLQQLSFGNQV---TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLES 203
Query: 310 LDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELP 369
L N++ I +G L L L L+ NQL + + ++ L LDL++N++S P
Sbjct: 204 LIATNNQISD-ITPLGILTNLDELSLNGNQLK-DIGTLA-SLTNLTDLDLANNQISNLAP 260
Query: 370 TNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEK 429
L L EL L N P + L L L N P ISNL L
Sbjct: 261 ---LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTY 313
Query: 430 LDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELP 489
L L +N + P L +LQ L +N++S + S + + +L N++S P
Sbjct: 314 LTLYFNNISDISPV-SSLTKLQRLFFYNNKVS-DVSSLA-NLTNINWLSAGHNQISDLTP 370
Query: 490 TNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRIL 526
NL + +L L++ + + N S +
Sbjct: 371 ---LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTV 404
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 4e-49
Identities = 104/521 (19%), Positives = 185/521 (35%), Gaps = 65/521 (12%)
Query: 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNAL 81
+ + I+ I + L+ L + ++ ++ + ++ +
Sbjct: 2 PLGSATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI 58
Query: 82 FGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQ 141
+ L+NL + +N P L + +L +
Sbjct: 59 --KSIDGVEY-LNNLTQINFSNNQLTDITP--LKNLTKLVD------------------- 94
Query: 142 LYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTI 201
+ ++ N + +AN + L L L N + P + NLT L +L+L N + I
Sbjct: 95 ILMNNNQI--ADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-I 149
Query: 202 PYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEE 261
L LQ L + L + L+ LD+SSN++S +V L LE
Sbjct: 150 SALSGLTSLQQLSFGNQVT--DLKPLA-NLTTLERLDISSNKVSDI---SVLAKLTNLES 203
Query: 262 LYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTI 321
L +NN P + L L L N +++LT L LDL N++ +
Sbjct: 204 LIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN-L 258
Query: 322 LYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEE 381
+ L +L L L NQ+S ++ + L L+L+ N+L P NL L
Sbjct: 259 APLSGLTKLTELKLGANQIS-NISPLA-GLTALTNLELNENQLEDISP---ISNLKNLTY 313
Query: 382 LYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTI 441
L L N P + + L+ L N ++NLT + L +N++
Sbjct: 314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLT 369
Query: 442 PYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEE 501
P +L ++ L L+D + + ++K + + N + + E
Sbjct: 370 PL-ANLTRITQLGLNDQAWTNAPVNYK---ANVSIPNTVKNVTGALIAPATISDGGSYTE 425
Query: 502 LYLSNNMFYGEIPSDTPNCSYLRILVVQF----NNFSGAIP 538
++ N+ PS T SY V FSG +
Sbjct: 426 PDITWNL-----PSYTNEVSYTFSQPVTIGKGTTTFSGTVT 461
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 1e-47
Identities = 79/372 (21%), Positives = 150/372 (40%), Gaps = 27/372 (7%)
Query: 163 LRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSG 222
L + P ++L + + LQ + + L + L ++ +++
Sbjct: 2 AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVTQ-EELESITKLVVAGEKVA- 57
Query: 223 SLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSY 282
S+ ++ + L++L+L+ N+++ P NL L LY+ N S N +
Sbjct: 58 SIQGIEY-LTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKI--TDISALQNLTN 111
Query: 283 LRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSG 342
LR L L +N S P ++NLTK+ L+L N + + ++ L +L ++++++
Sbjct: 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK- 168
Query: 343 SLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSY 402
+ N+ L L L+ N++ P +L L N P N +
Sbjct: 169 DVTPIA-NLTDLYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQITDITPVA--NMTR 222
Query: 403 LRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSG 462
L L + N P ++NL++L L++ N++ I L +L+ L++ NQ+S
Sbjct: 223 LNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS-DINAVKDLTKLKMLNVGSNQIS- 278
Query: 463 SLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSY 522
+ + L L L++N+L E V L L L+LS N P + S
Sbjct: 279 DISVLN-NLSQLNSLFLNNNQLGNEDM-EVIGGLTNLTTLFLSQNHITDIRPLA--SLSK 334
Query: 523 LRILVVQFNNFS 534
+
Sbjct: 335 MDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 4e-43
Identities = 83/438 (18%), Positives = 154/438 (35%), Gaps = 94/438 (21%)
Query: 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFG 83
L + P +L+ L + + + S+ + +
Sbjct: 3 ATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV-A 57
Query: 84 ELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLY 143
+ +L+NLE L L N P LS+ +L LY
Sbjct: 58 SIQGI--EYLTNLEYLNLNGNQITDISP--LSNLVKL-------------------TNLY 94
Query: 144 LSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPY 203
+ N S + N + LR L L +N S P ++NLTK+ L+L N +
Sbjct: 95 IGTNKI--TDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP 150
Query: 204 AGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELY 263
++ L +L ++++++ + + L L L+ N++ P +L L
Sbjct: 151 LSNMTGLNYLTVTESKVK-DVTPIA-NLTDLYSLSLNYNQIEDISP---LASLTSLHYFT 205
Query: 264 LSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILY 323
N P ++N+T+L L + N++ +
Sbjct: 206 AYVNQITDITP--------------------------VANMTRLNSLKIGNNKITD-LSP 238
Query: 324 VGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELY 383
+ +L QL WL++ NQ+S + + K ++ L+ L++ SN++S ++ +NL L L+
Sbjct: 239 LANLSQLTWLEIGTNQIS-DINAVK-DLTKLKMLNVGSNQIS-DISV--LNNLSQLNSLF 293
Query: 384 LSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY 443
L+NN E I LT L L L N + I
Sbjct: 294 LNNNQLGNEDME------------------------VIGGLTNLTTLFLSQNHITD-IRP 328
Query: 444 AGHLFQLQWLDLSDNQLS 461
L ++ D ++ +
Sbjct: 329 LASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 1e-36
Identities = 70/344 (20%), Positives = 135/344 (39%), Gaps = 44/344 (12%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALF 82
+T L ++G + + L++L+ L+L+ N + P + N+ L ++ N +
Sbjct: 46 ITKLVVAGEKVA--SIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI- 100
Query: 83 GELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQL 142
N L+NL L+L + P L++ ++ L
Sbjct: 101 -TDISALQN-LTNLRELYLNEDNISDISP--LANLTKMYS-------------------L 137
Query: 143 YLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIP 202
L N S ++N + L L + + P I+NLT L L L YN+++ I
Sbjct: 138 NLGANHN-LSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED-IS 193
Query: 203 YAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEEL 262
L L + NQ++ + M L L + +N+++ + NL L L
Sbjct: 194 PLASLTSLHYFTAYVNQIT-DITPVA-NMTRLNSLKIGNNKITD---LSPLANLSQLTWL 248
Query: 263 YLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTIL 322
+ N + + + L++L + N S ++NL++L L L N+L +
Sbjct: 249 EIGTNQI--SDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDM 304
Query: 323 -YVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLS 365
+G L L L LS N ++ + ++ + D ++ +
Sbjct: 305 EVIGGLTNLTTLFLSQNHIT-DIRPLA-SLSKMDSADFANQVIK 346
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 171 bits (434), Expect = 2e-47
Identities = 82/361 (22%), Positives = 141/361 (39%), Gaps = 60/361 (16%)
Query: 152 EIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA-GHLYQL 210
+P I + R+L L N E ++ LE+L+L N + P A +L+ L
Sbjct: 25 AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82
Query: 211 QWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMF 269
+ L L N+L +P F + L LD+S N++ L +F +L L+ L + +N
Sbjct: 83 RTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDL 140
Query: 270 YGEIPSDT-ANCSYLRILVLRFNNFSGAIPKEI-SNLTKLEKLDLQYNRLQGTILYV-GH 326
I + + L L L N + +IP E S+L L L L++ + Y
Sbjct: 141 -VYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR 198
Query: 327 LLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSN 386
L +L+ L++S ++ L L ++ L+ +P +L +L L LS
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSY 257
Query: 387 NMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGH 446
N I + L +L+++ L +L
Sbjct: 258 NPI-STIEGSM-----------------------LHELLRLQEIQLVGGQLA-------- 285
Query: 447 LFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSN 506
+ G + L+ L++S N+L+T L +VFH++ LE L L +
Sbjct: 286 -------VVEPYAFRG--------LNYLRVLNVSGNQLTT-LEESVFHSVGNLETLILDS 329
Query: 507 N 507
N
Sbjct: 330 N 330
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 5e-40
Identities = 65/326 (19%), Positives = 115/326 (35%), Gaps = 64/326 (19%)
Query: 213 LDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGE 272
+ + ++P + LDL NR+ L + F + P LEEL L+ N
Sbjct: 16 VLCHRKRFV-AVPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNEN----- 66
Query: 273 IPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVG---HLLQ 329
+ + F+ L L L L+ NRL ++ +G L
Sbjct: 67 -----------IVSAVEPGAFNN--------LFNLRTLGLRSNRL--KLIPLGVFTGLSN 105
Query: 330 LQWLDLSDNQLSGSLPSFKF-NMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNM 388
L LD+S+N++ L + F ++ L+ L++ N L + F L LE+L L
Sbjct: 106 LTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKC- 162
Query: 389 FYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA-GHL 447
+ + S+L L L L++ + Y+ L
Sbjct: 163 ---------------NLTSIPTEAL--------SHLHGLIVLRLRHLNINAIRDYSFKRL 199
Query: 448 FQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
++L+ L++S ++ L L ++ L T +P +L +L L LS N
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL-TAVPYLAVRHLVYLRFLNLSYN 258
Query: 508 MFYGEIPSDT-PNCSYLRILVVQFNN 532
I L+ + +
Sbjct: 259 PI-STIEGSMLHELLRLQEIQLVGGQ 283
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 7e-40
Identities = 78/381 (20%), Positives = 140/381 (36%), Gaps = 66/381 (17%)
Query: 15 TCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIF-NMSSLLS 73
C + V +P + + + LDL N ++ F + L
Sbjct: 8 ECSAQDRAV---LCHRKRFV-AVPEGI--PTETRLLDLGKNRIK-TLNQDEFASFPHLEE 60
Query: 74 INFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWD 133
+ N + + P N+L NL +L L+SN + L +
Sbjct: 61 LELNENIV-SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK----------- 108
Query: 134 HTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQ 193
L +S+N +I++L F L L+ L++
Sbjct: 109 --------LDISEN----------------KIVILLDYMFQD--------LYNLKSLEVG 136
Query: 194 YNKLQGTIPYA--GHLYQLQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRLSAELPT 250
N L I + L L+ L L L+ S+P+ + L L L ++ +
Sbjct: 137 DNDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN-AIRD 193
Query: 251 NVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKL 310
F L L+ L +S+ + + + L L + N + + +L L L
Sbjct: 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL 253
Query: 311 DLQYNRLQGTILYVG---HLLQLQWLDLSDNQLSGSLPSFKF-NMPLLQFLDLSSNRLSV 366
+L YN + + + LL+LQ + L QL+ + + F + L+ L++S N+L+
Sbjct: 254 NLSYNPI--STIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTT 310
Query: 367 ELPTNVFHNLPFLEELYLSNN 387
L +VFH++ LE L L +N
Sbjct: 311 -LEESVFHSVGNLETLILDSN 330
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 26 LNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIF-NMSSLLSINFINNALFGE 84
LN+S ++ S L L LQ + L + + F ++ L +N N L
Sbjct: 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQL-TT 310
Query: 85 LPPNFCNHLSNLESLFLKSNMFH 107
L + + + NLE+L L SN
Sbjct: 311 LEESVFHSVGNLETLILDSNPLA 333
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 167 bits (424), Expect = 7e-47
Identities = 85/361 (23%), Positives = 141/361 (39%), Gaps = 30/361 (8%)
Query: 153 IPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA--GHLYQL 210
I S++ + + E L + + + + ++ +P A Q+
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71
Query: 211 QWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMF 269
+ L+L+D Q+ + ++ F +Q L + N + LP +VF N+P L L L N
Sbjct: 72 ELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL 129
Query: 270 YGEIPSDT-ANCSYLRILVLRFNNFSGAIPKEI-SNLTKLEKLDLQYNRLQGTILYVGHL 327
+P N L L + NN I + T L+ L L NRL T + + +
Sbjct: 130 -SSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRL--THVDLSLI 185
Query: 328 LQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNN 387
L ++S N LS +L ++ LD S N ++ + V L L L +N
Sbjct: 186 PSLFHANVSYNLLS-TLA----IPIAVEELDASHNSIN-VVRGPVNVEL---TILKLQHN 236
Query: 388 MFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEI-SNLTKLEKLDLQYNRLQGTIPYAGH 446
+ N L + L +N I + +LE+L + NRL Y
Sbjct: 237 NL--TDTAWLLNYPGLVEVDLSYNEL-EKIMYHPFVKMQRLERLYISNNRLVALNLYGQP 293
Query: 447 LFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSN 506
+ L+ LDLS N L + + + L+ L L N + L + H L L LS+
Sbjct: 294 IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI-VTLKLSTHHTLK---NLTLSH 348
Query: 507 N 507
N
Sbjct: 349 N 349
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 157 bits (400), Expect = 2e-43
Identities = 81/406 (19%), Positives = 148/406 (36%), Gaps = 69/406 (16%)
Query: 60 SIPASIFNMSSL--LSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSC 117
I +++ + I+ ++ L+N + + K++ + L S
Sbjct: 12 CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDI---TLNNQKIVTFKNSTMRKLPAALLDSF 68
Query: 118 KRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAI 177
+++ + L L+ +I + F+
Sbjct: 69 RQV-------------------ELLNLNDL----------------QIEEIDTYAFAY-- 91
Query: 178 PKEISNLTKLEKLDLQYNKLQGTIPYA-GHLYQLQWLDLSDNQLSGSLPSFKF-KMPLLQ 235
++KL + +N ++ P+ ++ L L L N LS SLP F P L
Sbjct: 92 ------AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLT 144
Query: 236 FLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSG 295
L +S+N L + + F L+ L LS+N + L + +N S
Sbjct: 145 TLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRL-THVDLS--LIPSLFHANVSYNLLS- 199
Query: 296 AIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQ 355
++ +E+LD +N + ++ ++L L L N L+ N P L
Sbjct: 200 ----TLAIPIAVEELDASHNSI--NVVRGPVNVELTILKLQHNNLT-DTAWLL-NYPGLV 251
Query: 356 FLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPG 415
+DLS N L ++ + F + LE LY+SNN + Q L++L L N+
Sbjct: 252 EVDLSYNELE-KIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHL-L 308
Query: 416 AIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLS 461
+ + +LE L L +N + T+ L+ L LS N
Sbjct: 309 HVERNQPQFDRLENLYLDHNSIV-TLK-LSTHHTLKNLTLSHNDWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 3e-39
Identities = 75/340 (22%), Positives = 135/340 (39%), Gaps = 32/340 (9%)
Query: 204 AGHLYQLQWLDLSDNQLSGSLPSFKFKMPL--LQFLDLSSNRLSAELPTNVFHNLPFLEE 261
+ Y + D+ + + + + L + + ++ + +LP + + +E
Sbjct: 15 SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVEL 73
Query: 262 LYLSNNMFYGEIPSDT-ANCSYLRILVLRFNNFSGAIPKEI-SNLTKLEKLDLQYNRLQG 319
L L++ EI + A ++ L + FN +P + N+ L L L+ N L
Sbjct: 74 LNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL-- 129
Query: 320 TILYVG---HLLQLQWLDLSDNQLSGSLPSFKF-NMPLLQFLDLSSNRLSVELPTNVFHN 375
+ L G + +L L +S+N L + F LQ L LSSNRL+ + ++ +
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPS 187
Query: 376 LPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYN 435
L +S N+ S + L N+ + + +L L LQ+N
Sbjct: 188 L---FHANVSYNLL-----STLAIPIAVEELDASHNSI-NVVRGPV--NVELTILKLQHN 236
Query: 436 RLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRLSTELPTNVFH 494
L + + L +DLS N+L + F M L+ L +S+NRL L
Sbjct: 237 NLT-DTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRL-VALNL-YGQ 292
Query: 495 NLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFS 534
+P L+ L LS+N + + P L L + N+
Sbjct: 293 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 1e-37
Identities = 74/365 (20%), Positives = 129/365 (35%), Gaps = 44/365 (12%)
Query: 26 LNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIF-NMSSLLSINFINNALFGE 84
++I V E L++ + + + +PA++ + + +N + + E
Sbjct: 26 VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQI-EE 83
Query: 85 LPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYL 144
+ + ++ L++ N P + L L L
Sbjct: 84 IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV-------------------LVL 124
Query: 145 SKNMFYGEIPSDI-ANCSYLRILVLQFNNFSGAIPKEI-SNLTKLEKLDLQYNKLQGTIP 202
+N +P I N L L + NN I + T L+ L L N+L +
Sbjct: 125 ERNDL-SSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD 181
Query: 203 YAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEEL 262
+ L ++S N LS +L ++ LD S N ++ + V L L
Sbjct: 182 -LSLIPSLFHANVSYNLLS-TLA----IPIAVEELDASHNSIN-VVRGPVNVEL---TIL 231
Query: 263 YLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTIL 322
L +N + N L + L +N + + +LE+L + NRL L
Sbjct: 232 KLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL 289
Query: 323 YVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEEL 382
Y + L+ LDLS N L + + L+ L L N + L + H L L
Sbjct: 290 YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLK---NL 344
Query: 383 YLSNN 387
LS+N
Sbjct: 345 TLSHN 349
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 2e-35
Identities = 67/321 (20%), Positives = 116/321 (36%), Gaps = 39/321 (12%)
Query: 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIF-NMSSLLSINFINNA 80
+V LN++ L + ++Q L + FN +P +F N+ L + N
Sbjct: 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERND 128
Query: 81 LFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQ 140
L LP ++ L +L + +N T + L+
Sbjct: 129 L-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN------------------ 169
Query: 141 QLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGT 200
L LS N + ++ L + +N S ++ +E+LD +N +
Sbjct: 170 -LQLSSNRL-THVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-V 219
Query: 201 IPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLE 260
+ +L L L N L+ P L +DLS N L ++ + F + LE
Sbjct: 220 VR-GPVNVELTILKLQHNNLT-DTAWLL-NYPGLVEVDLSYNELE-KIMYHPFVKMQRLE 275
Query: 261 ELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGT 320
LY+SNN + L++L L N+ + + +LE L L +N +
Sbjct: 276 RLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI--V 331
Query: 321 ILYVGHLLQLQWLDLSDNQLS 341
L + L+ L LS N
Sbjct: 332 TLKLSTHHTLKNLTLSHNDWD 352
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 165 bits (421), Expect = 9e-46
Identities = 101/491 (20%), Positives = 188/491 (38%), Gaps = 65/491 (13%)
Query: 26 LNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGEL 85
NLT +P E N+ S +++ + + P + +++ + + L +
Sbjct: 16 PLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM-AVSRLRDCLDRQA 73
Query: 86 PPNFCNH---------LSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTK 136
N+ +LESL N ++P S K L + +L
Sbjct: 74 HELELNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL--SDLP 130
Query: 137 RNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNK 196
+ L +S N ++P ++ N S+L+I+ + N+ +P +L + N+
Sbjct: 131 PLLEYLGVSNNQL-EKLP-ELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFI---AAGNNQ 184
Query: 197 LQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNL 256
L+ +P +L L + +N L LP L+ + +N L ELP NL
Sbjct: 185 LE-ELPELQNLPFLTAIYADNNSLK-KLPDL---PLSLESIVAGNNILE-ELPE--LQNL 236
Query: 257 PFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNR 316
PFL +Y NN+ +P + L + + +P+ +LT L+ + ++
Sbjct: 237 PFLTTIYADNNLL-KTLPDLPPSLEALNVRDNYLTD----LPELPQSLTFLDVSENIFSG 291
Query: 317 LQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNL 376
L L +L+ S N++ SL P L+ L++S+N+L ELP
Sbjct: 292 LSELPP------NLYYLNASSNEIR-SLCD---LPPSLEELNVSNNKLI-ELPAL----P 336
Query: 377 PFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNR 436
P LE L S N E+P QN L+ L +++N P ++ L +++
Sbjct: 337 PRLERLIASFNHL-AEVPELPQN---LKQLHVEYNPLR-EFPDIPESVEDL-RMNSHLAE 390
Query: 437 LQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNL 496
+ L+ L + N L P ++ L ++S R+ +
Sbjct: 391 VPELPQ------NLKQLHVETNPLR-EFPD---IPESVEDLRMNSERV-VDPYEFAHETT 439
Query: 497 PFLEELYLSNN 507
LE+ ++
Sbjct: 440 DKLEDDVFEHH 450
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 2e-37
Identities = 94/415 (22%), Positives = 161/415 (38%), Gaps = 65/415 (15%)
Query: 140 QQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNL-------------TK 186
Q+ + E+P + N ++ + P +
Sbjct: 14 QEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQ 72
Query: 187 LEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSA 246
+L+L L ++P L+ L S N L+ LP + L + + LS
Sbjct: 73 AHELELNNLGLS-SLPEL--PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALS- 127
Query: 247 ELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTK 306
+LP LE L +SNN ++P + N S+L+I+ + N+ +P +L
Sbjct: 128 DLPPL-------LEYLGVSNNQL-EKLP-ELQNSSFLKIIDVDNNSLK-KLPDLPPSLEF 177
Query: 307 LEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSV 366
+ N+L+ + + +L L + +N L LP + L+ + +N L
Sbjct: 178 I---AAGNNQLE-ELPELQNLPFLTAIYADNNSLK-KLPDLPLS---LESIVAGNNILE- 228
Query: 367 ELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTK 426
ELP NLPFL +Y NN+ +P + L + + +P+ +LT
Sbjct: 229 ELPE--LQNLPFLTTIYADNNLL-KTLPDLPPSLEALNVRDNYLTD----LPELPQSLTF 281
Query: 427 LEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLST 486
L+ + ++ L P L +L+ S N++ SL P L+ L++S+N+L
Sbjct: 282 LDVSENIFSGLSELPP------NLYYLNASSNEIR-SLCDL---PPSLEELNVSNNKL-I 330
Query: 487 ELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPKEI 541
ELP P LE L S N E+P N L+ L V++N P
Sbjct: 331 ELPAL----PPRLERLIASFNHL-AEVPELPQN---LKQLHVEYNPLR-EFPDIP 376
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 8e-18
Identities = 44/245 (17%), Positives = 84/245 (34%), Gaps = 33/245 (13%)
Query: 297 IPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQF 356
I + T L++ + L + ++ + ++ + P +
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPP-----GNGEQ 57
Query: 357 LDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGA 416
+++ +RL L EL L+N +P + L LV N+
Sbjct: 58 REMAVSRLRDCLDRQ-------AHELELNNLGL-SSLPELPPH---LESLVASCNSL-TE 105
Query: 417 IPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQF 476
+P+ +L L + L P L++L +S+NQL LP + L+
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPP------LLEYLGVSNNQLE-KLPELQ-NSSFLKI 157
Query: 477 LDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGA 536
+D+ +N L + P LE + NN E + N +L + N+
Sbjct: 158 IDVDNNSL-----KKLPDLPPSLEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLK-K 209
Query: 537 IPKEI 541
+P
Sbjct: 210 LPDLP 214
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 1e-44
Identities = 68/388 (17%), Positives = 136/388 (35%), Gaps = 24/388 (6%)
Query: 126 SLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLT 185
++++ + ++ ++ + + S + ++ L L N S +++ T
Sbjct: 1 AIHEIKQNGN--RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT 58
Query: 186 KLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLS 245
KLE L+L N L L L+ LDL++N + L P ++ L ++N +S
Sbjct: 59 KLELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ-ELLV----GPSIETLHAANNNIS 112
Query: 246 AELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSG-AIPKEISNL 304
+ + + +YL+NN D S ++ L L+ N + ++
Sbjct: 113 -RVSCSRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168
Query: 305 TKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRL 364
LE L+LQYN + + +L+ LDLS N+L+ + + + ++ L +N+L
Sbjct: 169 DTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226
Query: 365 SVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNL 424
+ LE L N F+ D + R+ + +
Sbjct: 227 V-LIE-KALRFSQNLEHFDLRGNGFHCGTLRDFFS-KNQRVQTVAKQTVKKLTGQNEEEC 283
Query: 425 TKLEKLDLQYNRLQGT-IPYAGHLFQLQWLDLSDNQLSGS----LPSFKFKMPLLQFLDL 479
T + P+A L L+ + + GS L + + +D
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDA 343
Query: 480 SSNRLSTELPTNVFHNLPFLEELYLSNN 507
+ + V L
Sbjct: 344 LKEQY-RTVIDQVTLRKQAKITLEQKKK 370
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 2e-40
Identities = 64/339 (18%), Positives = 119/339 (35%), Gaps = 19/339 (5%)
Query: 205 GHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYL 264
+ + + ++D+ L +L S + ++ LDLS N LS ++ LE L L
Sbjct: 7 QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNL 65
Query: 265 SNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYV 324
S+N+ Y D + S LR L L N E+ +E L N + + +
Sbjct: 66 SSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI--SRVSC 116
Query: 325 GHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYL 384
+ + L++N+++ + +Q+LDL N + + + LE L L
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176
Query: 385 SNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA 444
N Y ++ + L+ L L N + E + + + L+ N+L I A
Sbjct: 177 QYNFIY-DVKGQV-VFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKA 232
Query: 445 -GHLFQLQWLDLSDNQLS-GSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEEL 502
L+ DL N G+L F K +Q + + +L
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV---KKLTGQNEEECTVPTLG 289
Query: 503 YLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPKEI 541
+ L+ + G+ + +
Sbjct: 290 HYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERL 328
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 1e-39
Identities = 70/501 (13%), Positives = 140/501 (27%), Gaps = 85/501 (16%)
Query: 37 IPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNL 96
I N + + ++ + + + N+
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLK-------------------------QALASLRQSAWNV 36
Query: 97 ESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSD 156
+ L L N + L+ +L L LS N+ Y D
Sbjct: 37 KELDLSGNPLSQISAADLAPFTKLEL-------------------LNLSSNVLYE--TLD 75
Query: 157 IANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLS 216
+ + S LR L L N E+ +E L N + + + + L+
Sbjct: 76 LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVS-CSRGQGKKNIYLA 128
Query: 217 DNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSD 276
+N+++ + +Q+LDL N + + + LE L L N Y ++
Sbjct: 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQ 187
Query: 277 TANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLS 336
+ L+ L L N + + E + + + L+ N+L + L+ DL
Sbjct: 188 -VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLR 245
Query: 337 DNQLS-GSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPS 395
N G+L F +Q + + + +L +
Sbjct: 246 GNGFHCGTLRDFFSKNQRVQTVAKQTVK---KLTGQNEEECTVPTLGHYGAY-------- 294
Query: 396 DTQNCSYLRILVLKFNNFPGAIPKEISNLT--KLEKLDLQYNRLQGTIPYAGHLFQLQWL 453
+ P + L + L Q + + + + + +
Sbjct: 295 -------------CCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREI 341
Query: 454 DLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEI 513
D Q + + L+ L E +N L+ E+
Sbjct: 342 DALKEQYRTVIDQVTLRKQAKITLEQKKKAL-DEQVSNGRRAHAELDGTLQQAV-GQIEL 399
Query: 514 PSDTPNCSYLRILVVQFNNFS 534
T S L++L +
Sbjct: 400 QHATEEQSPLQLLRAIVKRYE 420
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 7e-32
Identities = 71/472 (15%), Positives = 153/472 (32%), Gaps = 45/472 (9%)
Query: 26 LNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGEL 85
L++SG L+ ++L + L+ L+LS N + ++S+L +++ NN + EL
Sbjct: 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-QEL 95
Query: 86 PPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLS 145
++E+L +N + +S + + + +YL+
Sbjct: 96 LV-----GPSIETLHAANNNI----------------SRVSCSRG------QGKKNIYLA 128
Query: 146 KNMFYGEIPSDIANCSYLRILVLQFNNFSG-AIPKEISNLTKLEKLDLQYNKLQGTIPYA 204
N D S ++ L L+ N + ++ LE L+LQYN + +
Sbjct: 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQ 187
Query: 205 GHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYL 264
+L+ LDLS N+L+ + + ++ L +N+L + LE L
Sbjct: 188 VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIE-KALRFSQNLEHFDL 244
Query: 265 SNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGT-ILY 323
N F+ D R+ + + T + +
Sbjct: 245 RGNGFHCGTLRD-FFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303
Query: 324 VGHLLQLQWLDLSDNQLSGS----LPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFL 379
L+ L+ + + GS L + N + +D + + V
Sbjct: 304 ADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR-TVIDQVTLRKQAK 362
Query: 380 EELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQG 439
L ++ + + + L + + + + L+ L R +
Sbjct: 363 ITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG-QIELQHATEEQSPLQLLRAIVKRYEE 421
Query: 440 TI--PYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELP 489
+ ++ D+ ++ + L DL+ + L
Sbjct: 422 MYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQ 473
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 3e-08
Identities = 26/244 (10%), Positives = 54/244 (22%), Gaps = 18/244 (7%)
Query: 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFG 83
T +++ L I L +L+ DL N F F S + +
Sbjct: 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF--SKNQRVQTVAKQTVK 273
Query: 84 ELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLY 143
+L + + L+ +L L
Sbjct: 274 KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHAL--------------LS 319
Query: 144 LSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPY 203
+ + + N + R + + I + L+ + L +
Sbjct: 320 GQGSET-ERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSN 378
Query: 204 AGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELY 263
+ L L + LQ L R + +
Sbjct: 379 GRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWD 438
Query: 264 LSNN 267
+ +
Sbjct: 439 MYQH 442
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 162 bits (411), Expect = 2e-43
Identities = 85/363 (23%), Positives = 142/363 (39%), Gaps = 28/363 (7%)
Query: 150 YGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA--GHL 207
Y I S++ + + E L + + + + ++ +P A
Sbjct: 16 YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSF 74
Query: 208 YQLQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSN 266
Q++ L+L+D Q+ + ++ F +Q L + N + LP +VF N+P L L L
Sbjct: 75 RQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLER 132
Query: 267 NMFYGEIPSDT-ANCSYLRILVLRFNNFSGAIPKEI-SNLTKLEKLDLQYNRLQGTILYV 324
N +P N L L + NN I + T L+ L L NRL T + +
Sbjct: 133 NDL-SSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRL--THVDL 188
Query: 325 GHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYL 384
+ L ++S N LS +L ++ LD S N ++ + V L L L
Sbjct: 189 SLIPSLFHANVSYNLLS-TLA----IPIAVEELDASHNSIN-VVRGPVNVE---LTILKL 239
Query: 385 SNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA 444
+N + N L + L +N + + +LE+L + NRL Y
Sbjct: 240 QHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG 297
Query: 445 GHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYL 504
+ L+ LDLS N L + + + L+ L L N + L + H L L L
Sbjct: 298 QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI-VTLKLSTHHTLK---NLTL 352
Query: 505 SNN 507
S+N
Sbjct: 353 SHN 355
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 143 bits (361), Expect = 9e-37
Identities = 75/339 (22%), Positives = 133/339 (39%), Gaps = 30/339 (8%)
Query: 204 AGHLYQLQWLDLSDNQLSGSLPSFKFKMPL--LQFLDLSSNRLSAELPTNVFHNLPFLEE 261
+ Y + D+ + + + + L + + ++ + +LP + + +E
Sbjct: 21 SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVEL 79
Query: 262 LYLSNNMFYGEIPSDT-ANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGT 320
L L++ EI + A ++ L + FN P N+ L L L+ N L +
Sbjct: 80 LNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL--S 136
Query: 321 ILYVG---HLLQLQWLDLSDNQLSGSLPSFKF-NMPLLQFLDLSSNRLSVELPTNVFHNL 376
L G + +L L +S+N L + F LQ L LSSNRL+ + ++ +L
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPSL 194
Query: 377 PFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNR 436
+S N+ S + L N+ + + +L L LQ+N
Sbjct: 195 ---FHANVSYNLL-----STLAIPIAVEELDASHNSI-NVVRGPV--NVELTILKLQHNN 243
Query: 437 LQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRLSTELPTNVFHN 495
L + + L +DLS N+L + F M L+ L +S+NRL L
Sbjct: 244 LT-DTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRL-VALNL-YGQP 299
Query: 496 LPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFS 534
+P L+ L LS+N + + P L L + N+
Sbjct: 300 IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 138 bits (348), Expect = 5e-35
Identities = 74/365 (20%), Positives = 129/365 (35%), Gaps = 44/365 (12%)
Query: 26 LNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIF-NMSSLLSINFINNALFGE 84
++I V E L++ + + + +PA++ + + +N + + E
Sbjct: 32 VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQI-EE 89
Query: 85 LPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYL 144
+ + ++ L++ N P + L L L
Sbjct: 90 IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV-------------------LVL 130
Query: 145 SKNMFYGEIPSDI-ANCSYLRILVLQFNNFSGAIPKEI-SNLTKLEKLDLQYNKLQGTIP 202
+N +P I N L L + NN I + T L+ L L N+L +
Sbjct: 131 ERNDL-SSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD 187
Query: 203 YAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEEL 262
+ L ++S N LS +L ++ LD S N ++ + V L L
Sbjct: 188 -LSLIPSLFHANVSYNLLS-TLA----IPIAVEELDASHNSIN-VVRGPVNVE---LTIL 237
Query: 263 YLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTIL 322
L +N + N L + L +N + + +LE+L + NRL L
Sbjct: 238 KLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL 295
Query: 323 YVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEEL 382
Y + L+ LDLS N L + + L+ L L N + L + H L L
Sbjct: 296 YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLK---NL 350
Query: 383 YLSNN 387
LS+N
Sbjct: 351 TLSHN 355
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 136 bits (343), Expect = 2e-34
Identities = 91/492 (18%), Positives = 172/492 (34%), Gaps = 42/492 (8%)
Query: 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIF-NMSSLLSINFINNALF 82
+ + + L + ++ L+L+ I F ++ + NA+
Sbjct: 54 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAI- 111
Query: 83 GELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLN-------DFFWDHT 135
LPP+ ++ L L L+ N + +L S+S N D F T
Sbjct: 112 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 171
Query: 136 KRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYN 195
+ Q L LS N + ++ L + +N S ++ +E+LD +N
Sbjct: 172 --SLQNLQLSSNRL-THVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHN 221
Query: 196 KLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHN 255
+ + +L L L N L+ P L +DLS N L ++ + F
Sbjct: 222 SIN-VVR-GPVNVELTILKLQHNNLT-DTAWLL-NYPGLVEVDLSYNELE-KIMYHPFVK 276
Query: 256 LPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYN 315
+ LE LY+SNN + L++L L N+ + + +LE L L +N
Sbjct: 277 MQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 334
Query: 316 RLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHN 375
+ L + L+ L LS N + S + + + ++ + H
Sbjct: 335 SI--VTLKLSTHHTLKNLTLSHNDWDCN--SLRALFRNVARPAVDDADQHCKIDYQLEHG 390
Query: 376 L-------PFLEEL--YLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTK 426
L P+L+ L Y++ ++ CS + + + L
Sbjct: 391 LCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQG 450
Query: 427 LEKLDLQYNRLQGTIP--YAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRL 484
E+L+ + N L+ + + Q Q L ++ +L ++ L + N++
Sbjct: 451 NEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKV 510
Query: 485 STELPTNVFHNL 496
T L L
Sbjct: 511 FTHLKERQAFKL 522
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 95.0 bits (236), Expect = 8e-21
Identities = 78/498 (15%), Positives = 150/498 (30%), Gaps = 41/498 (8%)
Query: 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIF-NMSSLLSINFINNALF 82
T L + +L+ N L TL +S N I F +SL ++ +N L
Sbjct: 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRL- 183
Query: 83 GELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDF--FWDHTKRNWQ 140
+ + + +L + N+ STL+ + E S N
Sbjct: 184 THVDLS---LIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINVVRGPVNVELT 235
Query: 141 QLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGT 200
L L N + + N L + L +N + + +LE+L + N+L
Sbjct: 236 ILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL 293
Query: 201 IPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFL- 259
Y + L+ LDLS N L + + + L+ L L N + L + H L L
Sbjct: 294 NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLKNLT 351
Query: 260 ---------EELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKL 310
L N+ + +C L P L +
Sbjct: 352 LSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALT 411
Query: 311 DLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPT 370
+ ++Q + + + ++ L+ +L
Sbjct: 412 SV-VEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTN 470
Query: 371 NVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKL 430
L+ L+ + N R+ + K ++L + +
Sbjct: 471 EQIQQEQLLQGLHAEID----------TNLRRYRLPKDGLARSSDNLNKVFTHLKERQAF 520
Query: 431 DLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRLSTELP 489
L+ + + T A + + L+ + L L + + K L Q L ++ +L
Sbjct: 521 KLRETQARRTEADA-KQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKV-KQLE 578
Query: 490 TNVFHNLPFLEELYLSNN 507
N + ++
Sbjct: 579 AKKNRNPDTRRVSHHHHH 596
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 2e-42
Identities = 66/332 (19%), Positives = 120/332 (36%), Gaps = 26/332 (7%)
Query: 206 HLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLS 265
+ + + ++D+ L +L S + ++ LDLS N LS ++ LE L LS
Sbjct: 8 NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLS 66
Query: 266 NNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVG 325
+N+ Y D + S LR L L N E+ +E L N + + +
Sbjct: 67 SNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI--SRVSCS 117
Query: 326 HLLQLQWLDLSDNQLSGSLPSFKF-NMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYL 384
+ + L++N+++ L +Q+LDL N + + + LE L L
Sbjct: 118 RGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176
Query: 385 SNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA 444
N Y ++ + L+ L L N + E + + + L+ N+L I A
Sbjct: 177 QYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKA 232
Query: 445 -GHLFQLQWLDLSDNQLS-GSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEEL 502
L+ DL N G+L F K +Q + + +L
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV---KKLTGQNEEECTVPTLG 289
Query: 503 YLSNNMFYGEIPSDTPNCSYLRILVVQFNNFS 534
+ D P R++ + ++
Sbjct: 290 HYGAYCC-----EDLPAPFADRLIALGHHHHH 316
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 6e-39
Identities = 61/382 (15%), Positives = 122/382 (31%), Gaps = 68/382 (17%)
Query: 126 SLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLT 185
++++ + ++ ++ + + S + ++ L L N S +++ T
Sbjct: 1 AIHEIKQNGN--RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT 58
Query: 186 KLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLS 245
KLE L+L N L L L+ LDL++N + L P ++ L ++N +S
Sbjct: 59 KLELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ-ELLV----GPSIETLHAANNNIS 112
Query: 246 AELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLT 305
+ + + +YL+N N + + +
Sbjct: 113 -RVSCSRGQG---KKNIYLAN------------------------NKITMLRDLDEGCRS 144
Query: 306 KLEKLDLQYNRLQG--TILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNR 363
+++ LDL+ N + L+ L+L N + + L+ LDLSSN+
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNK 202
Query: 364 LSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISN 423
L+ + F + + + L NN I K +
Sbjct: 203 LA-FMGPE-FQSAAGVTWISLRNNKL-------------------------VLIEKALRF 235
Query: 424 LTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNR 483
LE DL+ N + ++ + L + + L
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAY 294
Query: 484 LSTELPTNVFHNLPFLEELYLS 505
+LP L L +
Sbjct: 295 CCEDLPAPFADRLIALGHHHHH 316
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 8e-34
Identities = 57/351 (16%), Positives = 111/351 (31%), Gaps = 38/351 (10%)
Query: 37 IPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNL 96
I N + + ++ + ++ + + ++ ++ N L ++ + L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL-SQISAADLAPFTKL 60
Query: 97 ESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSD 156
E L L SN+ + L S LR L L+ N +
Sbjct: 61 ELLNLSSNVLYE--TLDLESLSTLRT-------------------LDLNNNYV-----QE 94
Query: 157 IANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA-GHLYQLQWLDL 215
+ + L NN S + + + L NK+ G ++Q+LDL
Sbjct: 95 LLVGPSIETLHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151
Query: 216 SDNQLSG-SLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIP 274
N++ + L+ L+L N + ++ V L+ L LS+N +
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV--FAKLKTLDLSSNKL-AFMG 207
Query: 275 SDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLD 334
+ + + + + LR N I K + LE DL+ N L +
Sbjct: 208 PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266
Query: 335 LSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLS 385
++ + L + L +LP L L +
Sbjct: 267 VAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 4e-18
Identities = 43/269 (15%), Positives = 92/269 (34%), Gaps = 33/269 (12%)
Query: 36 TIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSN 95
+L +LS+L+TLDL+ N+ + S+ +++ NN + + +
Sbjct: 71 YETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-SRVSC---SRGQG 121
Query: 96 LESLFLKSNMFHGKIPSTLSSCKRLRE--------TSLSLNDFFWDHTKRNWQQLYLSKN 147
++++L +N R++ +++ + + L L N
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD--TLEHLNLQYN 179
Query: 148 MFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA-GH 206
Y ++ + + L+ L L N + + E + + + L+ NKL I A
Sbjct: 180 FIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235
Query: 207 LYQLQWLDLSDNQLS-GSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLS 265
L+ DL N G+L F K +Q + + + +L +
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK---KLTGQNEEECTVPTLGHYG 292
Query: 266 NNMFYGEIPSDTANCSYLRILVLRFNNFS 294
D R++ L ++
Sbjct: 293 AYCC-----EDLPAPFADRLIALGHHHHH 316
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 5e-15
Identities = 31/244 (12%), Positives = 67/244 (27%), Gaps = 27/244 (11%)
Query: 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNAL 81
+ L+ + N++ + + + L+ N + S + ++ N +
Sbjct: 100 SIETLHAANNNIS-RVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156
Query: 82 FGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQ 141
LE L L+ N + + +L+
Sbjct: 157 DTVNFAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKT------------------- 195
Query: 142 LYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTI 201
L LS N + + + + + + L+ N I K + LE DL+ N
Sbjct: 196 LDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT 253
Query: 202 PYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEE 261
+ ++ + L + + L +LP L L
Sbjct: 254 LRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGH 312
Query: 262 LYLS 265
+
Sbjct: 313 HHHH 316
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 5e-42
Identities = 78/366 (21%), Positives = 142/366 (38%), Gaps = 79/366 (21%)
Query: 158 ANCS-YLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA--GHLYQLQWLD 214
C +LR++ +PK++ T L LDLQ NK+ I +L L L
Sbjct: 27 FRCQCHLRVVQCSDLGLE-KVPKDLPPDTAL--LDLQNNKIT-EIKDGDFKNLKNLHTLI 82
Query: 215 LSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEI 273
L +N++S + F + L+ L LS N+L ELP + L +EL + N
Sbjct: 83 LINNKIS-KISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTL---QELRVHEN------ 131
Query: 274 PSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVG---HLLQL 330
I +R + F+G L ++ ++L N L+ + + G + +L
Sbjct: 132 ----------EITKVRKSVFNG--------LNQMIVVELGTNPLKSSGIENGAFQGMKKL 173
Query: 331 QWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFY 390
++ ++D ++ ++P P L L L N+++ ++ L L +L LS N
Sbjct: 174 SYIRIADTNIT-TIPQGLP--PSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSI- 228
Query: 391 GEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA-GHLFQ 449
+ + + ++N L +L L N+L +P
Sbjct: 229 SAVDNGS-----------------------LANTPHLRELHLNNNKLV-KVPGGLADHKY 264
Query: 450 LQWLDLSDNQLSGSLPSFKF-------KMPLLQFLDLSSNRLS-TELPTNVFHNLPFLEE 501
+Q + L +N +S ++ S F K + L SN + E+ + F +
Sbjct: 265 IQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323
Query: 502 LYLSNN 507
+ L N
Sbjct: 324 VQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 3e-36
Identities = 59/309 (19%), Positives = 110/309 (35%), Gaps = 45/309 (14%)
Query: 140 QQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQG 199
L L N D N L L+L N S P + L KLE+L L N+L+
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK- 113
Query: 200 TIPYAGHLYQLQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRL-SAELPTNVFHNLP 257
+P LQ L + +N+++ + F + + ++L +N L S+ + F +
Sbjct: 114 ELP-EKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 258 FLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEI-SNLTKLEKLDLQYNR 316
L + +++ IP L L L N + + L L KL L +N
Sbjct: 172 KLSYIRIADTNI-TTIPQGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNS 227
Query: 317 LQ----GTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLS-----VE 367
+ G++ + L+ L L++N+L +P + +Q + L +N +S
Sbjct: 228 ISAVDNGSLA---NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283
Query: 368 LPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKL 427
P + L +N ++ ++ + F +
Sbjct: 284 CPPGYNTKKASYSGVSLFSN--------------PVQYWEIQPSTF--------RCVYVR 321
Query: 428 EKLDLQYNR 436
+ L +
Sbjct: 322 AAVQLGNYK 330
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 3e-32
Identities = 68/370 (18%), Positives = 130/370 (35%), Gaps = 80/370 (21%)
Query: 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIF-NMSSLLSINFINNALF 82
+ S L L +P +L LDL N + I F N+ +L ++ INN +
Sbjct: 34 RVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI- 88
Query: 83 GELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQL 142
++ P L LE L+L N L + Q+L
Sbjct: 89 SKISPGAFAPLVKLERLYLSKNQL----------------KELPEKMP------KTLQEL 126
Query: 143 YLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIP 202
+ +N I ++ + F+G L ++ ++L N L+ +
Sbjct: 127 RVHEN----------------EITKVRKSVFNG--------LNQMIVVELGTNPLKSSGI 162
Query: 203 YAG---HLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFL 259
G + +L ++ ++D ++ ++P P L L L N+++ ++ L L
Sbjct: 163 ENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKIT-KVDAASLKGLNNL 218
Query: 260 EELYLSNNMFYGEIPSDT-ANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQ 318
+L LS N + + + AN +LR L L N +P +++ ++ + L N +
Sbjct: 219 AKLGLSFNSI-SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276
Query: 319 GTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSV-ELPTNVFHNLP 377
+ N P + + L SN + E+ + F +
Sbjct: 277 ---------------AIGSNDFCP--PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 319
Query: 378 FLEELYLSNN 387
+ L N
Sbjct: 320 VRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 2e-31
Identities = 69/305 (22%), Positives = 120/305 (39%), Gaps = 65/305 (21%)
Query: 234 LQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNF 293
L+ + S L ++P ++ P L L NN +I ++ +F
Sbjct: 33 LRVVQCSDLGLE-KVPKDLP---PDTALLDLQNN----------------KITEIKDGDF 72
Query: 294 SGAIPKEISNLTKLEKLDLQYNRLQGTILYVG---HLLQLQWLDLSDNQLSGSLPSFKFN 350
NL L L L N++ + + G L++L+ L LS NQL LP
Sbjct: 73 K--------NLKNLHTLILINNKI--SKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP- 120
Query: 351 MPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKF 410
LQ L + N ++ ++ +VF+ L + + L N L+ ++
Sbjct: 121 -KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTN--------------PLKSSGIEN 164
Query: 411 NNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFK 470
F + KL + + + TIP G L L L N+++ + + K
Sbjct: 165 GAF--------QGMKKLSYIRIADTNIT-TIP-QGLPPSLTELHLDGNKIT-KVDAASLK 213
Query: 471 -MPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQ 529
+ L L LS N +S + N P L EL+L+NN ++P + Y++++ +
Sbjct: 214 GLNNLAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLH 271
Query: 530 FNNFS 534
NN S
Sbjct: 272 NNNIS 276
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 147 bits (372), Expect = 6e-40
Identities = 68/319 (21%), Positives = 112/319 (35%), Gaps = 22/319 (6%)
Query: 159 NCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDN 218
+ S L Q + +S + D + Q +
Sbjct: 10 HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA---NSNNPQIETRTGR 66
Query: 219 QLSGSLPSFKF-KMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDT 277
L + + P L+L S L + P F L L+ + + E+P
Sbjct: 67 ALKATADLLEDATQPGRVALELRSVPLP-QFPDQAF-RLSHLQHMTIDAAGL-MELPDTM 123
Query: 278 ANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQY-NRLQ---------GTILYVGHL 327
+ L L L N A+P I++L +L +L ++ L L
Sbjct: 124 QQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182
Query: 328 LQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNN 387
+ LQ L L + SLP+ N+ L+ L + ++ LS L H+LP LEEL L
Sbjct: 183 VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPA-IHHLPKLEELDLRGC 239
Query: 388 MFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA-GH 446
P + L+ L+LK + +P +I LT+LEKLDL+ +P
Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299
Query: 447 LFQLQWLDLSDNQLSGSLP 465
L + + + +
Sbjct: 300 LPANCIILVPPHLQAQLDQ 318
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 1e-38
Identities = 67/342 (19%), Positives = 118/342 (34%), Gaps = 31/342 (9%)
Query: 89 FCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNM 148
+H S E+L+ + + LS +R + W N Q+
Sbjct: 7 HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGR 66
Query: 149 FYGEIPSDIANCSY--LRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA-G 205
+ + + L L+ P + L+ L+ + + L +P
Sbjct: 67 ALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ 124
Query: 206 HLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLS 265
L+ L L+ N L +LP+ + L+ L + + ELP + E L
Sbjct: 125 QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183
Query: 266 NNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVG 325
N L+ L L + ++P I+NL L+ L ++ + L +
Sbjct: 184 N----------------LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIH 226
Query: 326 HLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLS 385
HL +L+ LDL + P L+ L L + LP + H L LE+L L
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLR 285
Query: 386 NNMFYGEIPSDTQNCSYLRILVLKFN-------NFPGAIPKE 420
+ +PS I+++ + + P A P E
Sbjct: 286 GCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 1e-34
Identities = 64/334 (19%), Positives = 106/334 (31%), Gaps = 21/334 (6%)
Query: 175 GAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLL 234
G+ + + E L Q + L Q Q +D S
Sbjct: 2 GSSHHHHHHSSGRENLYFQGSTALRPYH--DVLSQWQRHYNADRNRWHSAWRQA-NSNNP 58
Query: 235 QFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFS 294
Q + L A P L L + + P S+L+ + +
Sbjct: 59 QIETRTGRALKATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM 117
Query: 295 GAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPS-------- 346
+P + LE L L N L+ + L +L+ L + LP
Sbjct: 118 -ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176
Query: 347 -FKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRI 405
+ LQ L L + LP ++ NL L+ L + N+ + + L
Sbjct: 177 GEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPL-SALGPAIHHLPKLEE 233
Query: 406 LVLKFNNFPGAIPKEISNLTKLEKLDLQ-YNRLQGTIPYA-GHLFQLQWLDLSDNQLSGS 463
L L+ P L++L L+ + L T+P L QL+ LDL
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSR 292
Query: 464 LPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLP 497
LPS ++P + + + L +L + P
Sbjct: 293 LPSLIAQLPANCIILVPPH-LQAQLDQHRPVARP 325
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 2e-34
Identities = 57/333 (17%), Positives = 107/333 (32%), Gaps = 30/333 (9%)
Query: 202 PYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEE 261
+ H + L + + D + + N +
Sbjct: 6 HHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA-----NSNNPQI 60
Query: 262 LYLSNNMFYGEIPSDTANCSY--LRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQG 319
+ + + L LR P + L+ L+ + + L
Sbjct: 61 ETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME 118
Query: 320 TILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFL 379
+ L+ L L+ N L +LP+ ++ L+ L + + ELP
Sbjct: 119 LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELP---------- 167
Query: 380 EELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQG 439
+ + + Q L+ L L++ ++P I+NL L+ L ++ + L
Sbjct: 168 ------EPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS- 219
Query: 440 TIPYA-GHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPF 498
+ A HL +L+ LDL + P L+ L L LP + H L
Sbjct: 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQ 278
Query: 499 LEELYLSNNMFYGEIPSDTPNCSYLRILVVQFN 531
LE+L L + +PS I++V +
Sbjct: 279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 4e-34
Identities = 61/339 (17%), Positives = 105/339 (30%), Gaps = 42/339 (12%)
Query: 26 LNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGEL 85
L G L D + + S + I
Sbjct: 17 LYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS-----NNPQIETRTGRALKAT 71
Query: 86 PPNFCN-HLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYL 144
+ +L L+S + P L+ + +
Sbjct: 72 ADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQH-------------------MTI 111
Query: 145 SKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIP-- 202
E+P + + L L L N A+P I++L +L +L ++ +P
Sbjct: 112 DAAGL-MELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEP 169
Query: 203 --------YAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFH 254
L LQ L L + SLP+ + L+ L + ++ LS L H
Sbjct: 170 LASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPA-IH 226
Query: 255 NLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQY 314
+LP LEEL L P + L+ L+L+ + +P +I LT+LEKLDL+
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286
Query: 315 NRLQGTI-LYVGHLLQLQWLDLSDNQLSGSLPSFKFNMP 352
+ + L + + + + P
Sbjct: 287 CVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 5e-34
Identities = 60/349 (17%), Positives = 108/349 (30%), Gaps = 41/349 (11%)
Query: 40 ELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESL 99
+ S + L + + + + + +N +
Sbjct: 7 HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA-----NSNNPQIE 61
Query: 100 FLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIAN 159
+ + L+ T+ L D T+ L L + P
Sbjct: 62 --------------TRTGRALKATADLLEDA----TQPGRVALELRSVPL-PQFPDQAFR 102
Query: 160 CSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA-GHLYQLQWLDLSDN 218
S+L+ + + +P + LE L L N L+ +P + L +L+ L +
Sbjct: 103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC 160
Query: 219 QLSGSLPS---------FKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMF 269
LP + LQ L L + LP ++ NL L+ L + N+
Sbjct: 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPL 218
Query: 270 YGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQ-YNRLQGTILYVGHLL 328
+ + L L LR P L++L L+ + L L + L
Sbjct: 219 -SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT 277
Query: 329 QLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLP 377
QL+ LDL LPS +P + + + L +L + P
Sbjct: 278 QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH-LQAQLDQHRPVARP 325
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 2e-29
Identities = 54/274 (19%), Positives = 95/274 (34%), Gaps = 21/274 (7%)
Query: 279 NCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDN 338
+ S L + + +S + D + Q +
Sbjct: 10 HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQ---ANSNNPQIETRTGR 66
Query: 339 QLSGSLPSFKF-NMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDT 397
L + + P L+L S L + P F L L+ + + E+P
Sbjct: 67 ALKATADLLEDATQPGRVALELRSVPLP-QFPDQAF-RLSHLQHMTIDAAGL-MELPDTM 123
Query: 398 QNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIP----------YAGHL 447
Q + L L L N A+P I++L +L +L ++ +P L
Sbjct: 124 QQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182
Query: 448 FQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
LQ L L + SLP+ + L+ L + ++ L + L H+LP LEEL L
Sbjct: 183 VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL-SALGPA-IHHLPKLEELDLRGC 239
Query: 508 MFYGEIPSDTPNCSYLRILVVQFNNFSGAIPKEI 541
P + L+ L+++ + +P +I
Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI 273
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 2e-39
Identities = 68/359 (18%), Positives = 109/359 (30%), Gaps = 78/359 (21%)
Query: 152 EIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA-GHLYQL 210
+P +I+ +L LQ N+ S + L L L L NK+ A L +L
Sbjct: 47 AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104
Query: 211 QWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFY 270
Q L +S N L +P L L + NR+ ++P VF L + + + N
Sbjct: 105 QKLYISKNHLV-EIPPNLPSS--LVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGN--- 157
Query: 271 GEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQL 330
L F G KL L + +L T + L
Sbjct: 158 -----------PLENSGFEPGAFDG---------LKLNYLRISEAKL--TGIPKDLPETL 195
Query: 331 QWLDLSDNQLSGSLPSFKF-NMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMF 389
L L N++ ++ L L L N++ + LP L EL+L NN
Sbjct: 196 NELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKL 253
Query: 390 YGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQ 449
+P + +L L+ + L N +
Sbjct: 254 S-------------------------RVPAGLPDLKLLQVVYLHTNNIT----------- 277
Query: 450 LQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLS-TELPTNVFHNLPFLEELYLSNN 507
+ N F K + L +N + E+ F + + N
Sbjct: 278 ----KVGVNDFCP--VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 7e-31
Identities = 69/290 (23%), Positives = 114/290 (39%), Gaps = 30/290 (10%)
Query: 253 FHNLPFLEELYLSNNMFYGEIPSDTANCS-YLRILVLRFNNFSGAIPKEISNLTKLEKLD 311
+P L+ L + + C +LR++ A+PKEIS T L LD
Sbjct: 10 TSGIPDLDSLPPTYS------AMCPFGCHCHLRVVQCSDLGLK-AVPKEISPDTTL--LD 60
Query: 312 LQYNRLQGTILYVG---HLLQLQWLDLSDNQLSGSLPSFKF-NMPLLQFLDLSSNRLSVE 367
LQ N + + L L L L L +N++S + F + LQ L +S N L E
Sbjct: 61 LQNNDI--SELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLV-E 116
Query: 368 LPTNVFHNLPFLEELYLSNNMFYGEIPSDT-QNCSYLRILVLKFNNFP-GAIPKEISNLT 425
+P N+ +L EL + +N ++P + + + N +
Sbjct: 117 IPPNLPSSL---VELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172
Query: 426 KLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRL 484
KL L + +L IP L L L N++ ++ L L L N++
Sbjct: 173 KLNYLRISEAKLT-GIP-KDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQI 229
Query: 485 STELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFS 534
+ LP L EL+L NN +P+ P+ L+++ + NN +
Sbjct: 230 -RMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 2e-29
Identities = 63/375 (16%), Positives = 117/375 (31%), Gaps = 91/375 (24%)
Query: 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIF-NMSSLLSINFINNALF 82
+ S L L +P E+ LDL N S + F + L ++ +NN +
Sbjct: 36 RVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKI- 90
Query: 83 GELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQL 142
++ + L L+ L++ N + N + +L
Sbjct: 91 SKIHEKAFSPLRKLQKLYISKNHL----------------VEIPPNLP------SSLVEL 128
Query: 143 YLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTI- 201
+ N RI + FSG L + +++ N L+ +
Sbjct: 129 RIHDN----------------RIRKVPKGVFSG--------LRNMNCIEMGGNPLENSGF 164
Query: 202 -PYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLE 260
P A +L +L +S+ +L+ +P L L L N++ + L
Sbjct: 165 EPGAFDGLKLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQ-AIELEDLLRYSKLY 220
Query: 261 ELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGT 320
L L +N +I ++ + S L L +L L N+L
Sbjct: 221 RLGLGHN----------------QIRMIENGSL--------SFLPTLRELHLDNNKLSRV 256
Query: 321 ILYVGHLLQLQWLDLSDNQLSGSLPSFKF-------NMPLLQFLDLSSNRLS-VELPTNV 372
+ L LQ + L N ++ + F + L +N + E+
Sbjct: 257 PAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT 315
Query: 373 FHNLPFLEELYLSNN 387
F + + N
Sbjct: 316 FRCVTDRLAIQFGNY 330
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 147 bits (372), Expect = 5e-39
Identities = 75/333 (22%), Positives = 122/333 (36%), Gaps = 42/333 (12%)
Query: 210 LQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNM 268
+ ++DLS N ++ L F ++ LQFL + + N F L L L L N
Sbjct: 32 VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90
Query: 269 FYGEIPSDT-ANCSYLRILVLRFNNF-SGAIPKEI-SNLTKLEKLDLQYNRLQGTILYVG 325
F ++ + + L +L L N + LT LE L L+ N ++ I
Sbjct: 91 F-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPAS 148
Query: 326 ---HLLQLQWLDLSDNQLSGSLPSFKFNM---PLLQFLDLSSNRLS-------VELPTNV 372
++ + LDL+ N++ S+ L LSS L
Sbjct: 149 FFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207
Query: 373 FHNLPFLEELYLSNNMF-------------YGEIPSDTQNCSYLRILVLKFNNFPGAIPK 419
+ L LS N F +I S + SY NF
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267
Query: 420 EISNL--TKLEKLDLQYNRLQGTIPYA--GHLFQLQWLDLSDNQLSGSLPSFKF-KMPLL 474
L + ++ DL +++ + + H L+ L L+ N+++ + F + L
Sbjct: 268 TFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHL 325
Query: 475 QFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
L+LS N L + + +F NL LE L LS N
Sbjct: 326 LKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYN 357
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 141 bits (356), Expect = 8e-37
Identities = 97/506 (19%), Positives = 165/506 (32%), Gaps = 116/506 (22%)
Query: 15 TCDVRTYRVTALNISGLNLTV--TIPSELGNLSSLQTLDLSFNWFSGSIPASIF-NMSSL 71
C V Y L +P+ + +DLS N + + + F + L
Sbjct: 7 ECSVIGYNA---ICINRGLHQVPELPA------HVNYVDLSLNSIA-ELNETSFSRLQDL 56
Query: 72 LSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFF 131
+ + N LS+L L L N F + L +L+ +
Sbjct: 57 QFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNL- 115
Query: 132 WDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLD 191
LS N F LT LE L
Sbjct: 116 --------DGAVLSGNFF--------------------------------KPLTSLEMLV 135
Query: 192 LQYNKLQGTIPYA--GHLYQLQWLDLSDNQLSGSLPSFKFKM---PLLQFLDLSSNRLSA 246
L+ N ++ P + ++ + LDL+ N++ S+ L LSS L
Sbjct: 136 LRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITL-- 192
Query: 247 ELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTK 306
++ E + + + L L N F ++ K +
Sbjct: 193 ---------------QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA-- 235
Query: 307 LEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSV 366
+ +Q L + + D + G ++ DLS +++
Sbjct: 236 IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG------LEASGVKTCDLSKSKIF- 288
Query: 367 ELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTK 426
L +VF + LE+L L+ N I + N F LT
Sbjct: 289 ALLKSVFSHFTDLEQLTLAQN----------------EINKIDDNAF--------WGLTH 324
Query: 427 LEKLDLQYNRLQGTIPYAG--HLFQLQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNR 483
L KL+L N L +I +L +L+ LDLS N + +L F +P L+ L L +N+
Sbjct: 325 LLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQ 382
Query: 484 LSTELPTNVFHNLPFLEELYLSNNMF 509
L + +P +F L L++++L N +
Sbjct: 383 LKS-VPDGIFDRLTSLQKIWLHTNPW 407
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 98.7 bits (246), Expect = 3e-22
Identities = 68/332 (20%), Positives = 113/332 (34%), Gaps = 42/332 (12%)
Query: 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWF-SGSIPASIF-NMSSLLSINFINNAL 81
L + L++L+ L L+ + + F ++SL + +N +
Sbjct: 82 IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI 141
Query: 82 FGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNW-- 139
P +F ++ L L N L + + T L L+ W
Sbjct: 142 KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201
Query: 140 -------------QQLYLSKNMF-------------YGEIPSDIANCSYLRILVLQFNNF 173
L LS N F +I S I + SY NF
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261
Query: 174 SGAIPKEISNL--TKLEKLDLQYNKLQGTIPYA--GHLYQLQWLDLSDNQLSGSLPSFKF 229
L + ++ DL +K+ + + H L+ L L+ N+++ + F
Sbjct: 262 KDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAF 319
Query: 230 -KMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDT-ANCSYLRILV 287
+ L L+LS N L + + +F NL LE L LS N + + L+ L
Sbjct: 320 WGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELA 377
Query: 288 LRFNNFSGAIPKEI-SNLTKLEKLDLQYNRLQ 318
L N ++P I LT L+K+ L N
Sbjct: 378 LDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 408
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 2e-38
Identities = 76/307 (24%), Positives = 121/307 (39%), Gaps = 65/307 (21%)
Query: 209 QLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNM 268
Q + L +P + L+L N++ + N F +L LE L LS N
Sbjct: 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRN- 98
Query: 269 FYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVG--- 325
I + F+G L L L+L NRL T + G
Sbjct: 99 ---------------HIRTIEIGAFNG--------LANLNTLELFDNRL--TTIPNGAFV 133
Query: 326 HLLQLQWLDLSDNQLSGSLPSFKF-NMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYL 384
+L +L+ L L +N + S+PS+ F +P L+ LDL + + F L L L L
Sbjct: 134 YLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL 192
Query: 385 SNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA 444
+ EIP+ ++ L KL++LDL N L P +
Sbjct: 193 AMCNLR-EIPN-------------------------LTPLIKLDELDLSGNHLSAIRPGS 226
Query: 445 -GHLFQLQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRLSTELPTNVFHNLPFLEEL 502
L LQ L + +Q+ + F + L ++L+ N L+ LP ++F L LE +
Sbjct: 227 FQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTL-LPHDLFTPLHHLERI 284
Query: 503 YLSNNMF 509
+L +N +
Sbjct: 285 HLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 4e-37
Identities = 71/247 (28%), Positives = 113/247 (45%), Gaps = 21/247 (8%)
Query: 152 EIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA--GHLYQ 209
E+P I+ + R+L L N +L LE L L N ++ TI L
Sbjct: 57 EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLAN 113
Query: 210 LQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNM 268
L L+L DN+L+ ++P+ F + L+ L L +N + +P+ F+ +P L L L
Sbjct: 114 LNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELK 171
Query: 269 FYGEIPSDT-ANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQ----GTILY 323
I S LR L L N IP ++ L KL++LDL N L G+
Sbjct: 172 RLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSF-- 227
Query: 324 VGHLLQLQWLDLSDNQLSGSLPSFKF-NMPLLQFLDLSSNRLSVELPTNVFHNLPFLEEL 382
L+ LQ L + +Q+ + F N+ L ++L+ N L+ LP ++F L LE +
Sbjct: 228 -QGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERI 284
Query: 383 YLSNNMF 389
+L +N +
Sbjct: 285 HLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 1e-25
Identities = 62/252 (24%), Positives = 106/252 (42%), Gaps = 29/252 (11%)
Query: 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIF-NMSSLLSINFINNA 80
LN+ + + + +L L+ L LS N +I F +++L ++ +N
Sbjct: 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNR 123
Query: 81 LFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQ 140
L +P +LS L+ L+L++N + LR L +
Sbjct: 124 L-TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG-----------ELK 171
Query: 141 QL-YLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQG 199
+L Y+S+ F S LR L L N IP ++ L KL++LDL N L
Sbjct: 172 RLSYISEGAF--------EGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA 221
Query: 200 TIPYA-GHLYQLQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRLSAELPTNVFHNLP 257
P + L LQ L + +Q+ + F + L ++L+ N L+ LP ++F L
Sbjct: 222 IRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTL-LPHDLFTPLH 279
Query: 258 FLEELYLSNNMF 269
LE ++L +N +
Sbjct: 280 HLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 2e-25
Identities = 67/308 (21%), Positives = 113/308 (36%), Gaps = 59/308 (19%)
Query: 15 TCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIF-NMSSLLS 73
+C + +V NL +P + ++ + L+L N I + F ++ L
Sbjct: 40 SCSNQFSKV---ICVRKNLR-EVPDGI--STNTRLLNLHENQIQ-IIKVNSFKHLRHLEI 92
Query: 74 INFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWD 133
+ N + + N L+NL +L L N T++ F
Sbjct: 93 LQLSRNHI-RTIEIGAFNGLANLNTLELFDNRL----------------TTIPNGAF--- 132
Query: 134 HTKRNWQQLYLSKNMFYGEIPSDI-ANCSYLRILVLQFNNFSGAIPKEI-SNLTKLEKLD 191
++L+L N IPS LR L L I + L+ L L+
Sbjct: 133 VYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191
Query: 192 LQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRLSAELPT 250
L L+ IP L +L LDLS N LS ++ F+ + LQ L + +++ +
Sbjct: 192 LAMCNLR-EIPNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQ-VIER 248
Query: 251 NVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKL 310
N F NL L E+ L++N + +L + F+ L LE++
Sbjct: 249 NAFDNLQSLVEINLAHN----------------NLTLLPHDLFTP--------LHHLERI 284
Query: 311 DLQYNRLQ 318
L +N
Sbjct: 285 HLHHNPWN 292
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 99.4 bits (248), Expect = 1e-22
Identities = 54/210 (25%), Positives = 83/210 (39%), Gaps = 37/210 (17%)
Query: 329 QLQWLDLSDNQLSGSLPSFKFNMPL-LQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNN 387
Q + L +P + + L+L N++ + N F +L LE L LS N
Sbjct: 44 QFSKVICVRKNLR-EVPD---GISTNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRN 98
Query: 388 MFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA--G 445
I ++ F + L L L+L NRL TIP
Sbjct: 99 ----------------HIRTIEIGAF--------NGLANLNTLELFDNRLT-TIPNGAFV 133
Query: 446 HLFQLQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYL 504
+L +L+ L L +N + S+PS+ F +P L+ LDL + + + F L L L L
Sbjct: 134 YLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL 192
Query: 505 SNNMFYGEIPSDTPNCSYLRILVVQFNNFS 534
+ EIP+ T L L + N+ S
Sbjct: 193 AMCNLR-EIPNLT-PLIKLDELDLSGNHLS 220
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 3e-38
Identities = 72/307 (23%), Positives = 121/307 (39%), Gaps = 65/307 (21%)
Query: 209 QLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNM 268
Q + + LS +P ++L+L N + + + F +L LE L L N
Sbjct: 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRN- 109
Query: 269 FYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVG--- 325
I + F+G L L L+L N L T++ G
Sbjct: 110 ---------------SIRQIEVGAFNG--------LASLNTLELFDNWL--TVIPSGAFE 144
Query: 326 HLLQLQWLDLSDNQLSGSLPSFKF-NMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYL 384
+L +L+ L L +N + S+PS+ F +P L LDL + + F L L+ L L
Sbjct: 145 YLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203
Query: 385 SNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA 444
+ P ++ L LE+L++ N P +
Sbjct: 204 GMC---------------------NIKDMP-----NLTPLVGLEELEMSGNHFPEIRPGS 237
Query: 445 -GHLFQLQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRLSTELPTNVFHNLPFLEEL 502
L L+ L + ++Q+S + F + L L+L+ N LS+ LP ++F L +L EL
Sbjct: 238 FHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVEL 295
Query: 503 YLSNNMF 509
+L +N +
Sbjct: 296 HLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 141 bits (356), Expect = 9e-37
Identities = 69/247 (27%), Positives = 108/247 (43%), Gaps = 21/247 (8%)
Query: 152 EIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA--GHLYQ 209
E+P I S R L L NN +L LE L L N ++ I L
Sbjct: 68 EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLAS 124
Query: 210 LQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNM 268
L L+L DN L+ +PS F+ + L+ L L +N + +P+ F+ +P L L L
Sbjct: 125 LNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELK 182
Query: 269 FYGEIPSDT-ANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQ----GTILY 323
I L+ L L N +P ++ L LE+L++ N G+
Sbjct: 183 KLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSF-- 238
Query: 324 VGHLLQLQWLDLSDNQLSGSLPSFKF-NMPLLQFLDLSSNRLSVELPTNVFHNLPFLEEL 382
L L+ L + ++Q+S + F + L L+L+ N LS LP ++F L +L EL
Sbjct: 239 -HGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVEL 295
Query: 383 YLSNNMF 389
+L +N +
Sbjct: 296 HLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 4e-31
Identities = 60/253 (23%), Positives = 104/253 (41%), Gaps = 42/253 (16%)
Query: 296 AIPKEISNLTKLEKLDLQYNRLQGTILYVG---HLLQLQWLDLSDNQLSGSLPSFKF-NM 351
+P+ I + L+L N + ++ HL L+ L L N + + F +
Sbjct: 68 EVPQGIP--SNTRYLNLMENNI--QMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGL 122
Query: 352 PLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFN 411
L L+L N L+ +P+ F L L EL+L NN IPS
Sbjct: 123 ASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPI-ESIPSYA-------------- 166
Query: 412 NFPGAIPKEISNLTKLEKLDLQ-YNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPSFKF 469
F + + L +LDL +L+ A LF L++L+L + +P+
Sbjct: 167 -F--------NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLT- 215
Query: 470 KMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDT-PNCSYLRILVV 528
+ L+ L++S N E+ FH L L++L++ N+ I + + L L +
Sbjct: 216 PLVGLEELEMSGNHF-PEIRPGSFHGLSSLKKLWVMNSQV-SLIERNAFDGLASLVELNL 273
Query: 529 QFNNFSGAIPKEI 541
NN S ++P ++
Sbjct: 274 AHNNLS-SLPHDL 285
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 2e-26
Identities = 59/284 (20%), Positives = 105/284 (36%), Gaps = 37/284 (13%)
Query: 15 TCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIF-NMSSLLS 73
+C + +V + L+ +P + S+ + L+L N I A F ++ L
Sbjct: 51 SCSNQFSKV---VCTRRGLS-EVPQGI--PSNTRYLNLMENNIQ-MIQADTFRHLHHLEV 103
Query: 74 INFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWD 133
+ N++ ++ N L++L +L L N +L
Sbjct: 104 LQLGRNSI-RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKL------------- 149
Query: 134 HTKRNWQQLYLSKNMFYGEIPSDI-ANCSYLRILVLQFNNFSGAIPKEI-SNLTKLEKLD 191
++L+L N IPS L L L I + L L+ L+
Sbjct: 150 ------RELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN 202
Query: 192 LQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRLSAELPT 250
L ++ +P L L+ L++S N + F + L+ L + ++++S +
Sbjct: 203 LGMCNIK-DMPNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVS-LIER 259
Query: 251 NVFHNLPFLEELYLSNNMFYGEIPSDT-ANCSYLRILVLRFNNF 293
N F L L EL L++N +P D YL L L N +
Sbjct: 260 NAFDGLASLVELNLAHNNL-SSLPHDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 99.1 bits (247), Expect = 2e-22
Identities = 50/210 (23%), Positives = 81/210 (38%), Gaps = 37/210 (17%)
Query: 329 QLQWLDLSDNQLSGSLPSFKFNMPL-LQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNN 387
Q + + LS +P +P ++L+L N + + + F +L LE L L N
Sbjct: 55 QFSKVVCTRRGLS-EVPQ---GIPSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRN 109
Query: 388 MFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA--G 445
I ++ F + L L L+L N L IP
Sbjct: 110 ----------------SIRQIEVGAF--------NGLASLNTLELFDNWLT-VIPSGAFE 144
Query: 446 HLFQLQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYL 504
+L +L+ L L +N + S+PS+ F +P L LDL + + F L L+ L L
Sbjct: 145 YLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203
Query: 505 SNNMFYGEIPSDTPNCSYLRILVVQFNNFS 534
++P+ T L L + N+F
Sbjct: 204 GMCNIK-DMPNLT-PLVGLEELEMSGNHFP 231
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 6e-06
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIF-NMSSLLSINFINNA 80
+ L +SG + P LSSL+ L + + S I + F ++SL+ +N +N
Sbjct: 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNN 277
Query: 81 LFGELPPNFCNHLSNLESLFLKSNMFH 107
L LP + L L L L N ++
Sbjct: 278 L-SSLPHDLFTPLRYLVELHLHHNPWN 303
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 2e-37
Identities = 75/302 (24%), Positives = 110/302 (36%), Gaps = 58/302 (19%)
Query: 213 LDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGE 272
+ + L+ S+P+ L+L SN+L LP VF L L +L LS+N
Sbjct: 12 IRCNSKGLT-SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLS-- 65
Query: 273 IPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQW 332
F G + T L+ LDL +N + L QL+
Sbjct: 66 --------------------FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 105
Query: 333 LDLSDNQLSGSLPSFKF-NMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYG 391
LD + L F ++ L +LD+S V +F+ L LE L ++ N F
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQE 164
Query: 392 EIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA--GHLFQ 449
D + L L LDL +L+ + L
Sbjct: 165 NFLPDI-----------------------FTELRNLTFLDLSQCQLE-QLSPTAFNSLSS 200
Query: 450 LQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRLSTELPTNVFHNLP-FLEELYLSNN 507
LQ L++S N SL +F +K + LQ LD S N + T + P L L L+ N
Sbjct: 201 LQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMT-SKKQELQHFPSSLAFLNLTQN 258
Query: 508 MF 509
F
Sbjct: 259 DF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 2e-36
Identities = 65/248 (26%), Positives = 97/248 (39%), Gaps = 18/248 (7%)
Query: 152 EIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAG---HLY 208
+P+ I S L L+ N LT+L KL L N L +
Sbjct: 21 SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78
Query: 209 QLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNM 268
L++LDLS N + ++ S + L+ LD + L +VF +L L L +S+
Sbjct: 79 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137
Query: 269 FYGEIPSDT-ANCSYLRILVLRFNNFSGAIPKEI-SNLTKLEKLDLQYNRLQGTILYVG- 325
+ S L +L + N+F +I + L L LDL +L L
Sbjct: 138 T-RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL--EQLSPTA 194
Query: 326 --HLLQLQWLDLSDNQLSGSLPSFKF-NMPLLQFLDLSSNRLSVELPTNVFHNLP-FLEE 381
L LQ L++S N SL +F + + LQ LD S N + + P L
Sbjct: 195 FNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAF 252
Query: 382 LYLSNNMF 389
L L+ N F
Sbjct: 253 LNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 8e-35
Identities = 63/280 (22%), Positives = 100/280 (35%), Gaps = 38/280 (13%)
Query: 190 LDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSA-E 247
+ L ++P G L+L N+L SLP F K+ L L LSSN LS
Sbjct: 12 IRCNSKGLT-SVP-TGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKG 68
Query: 248 LPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEI-SNLTK 306
+ L+ L LS N + S+ L L + +N + +L
Sbjct: 69 CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127
Query: 307 LEKLDLQYNRLQGTILYV-GHLLQLQWLDLSDNQLSGSLPSFKF-NMPLLQFLDLSSNRL 364
L LD+ + + + L L+ L ++ N + F + L FLDLS +L
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187
Query: 365 SVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNL 424
+L F++L L+ L +S+N L + L
Sbjct: 188 E-QLSPTAFNSLSSLQVLNMSHN----------------NFFSLDTFPY--------KCL 222
Query: 425 TKLEKLDLQYNRLQGTIPY---AGHLFQLQWLDLSDNQLS 461
L+ LD N + T L +L+L+ N +
Sbjct: 223 NSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 54/210 (25%), Positives = 87/210 (41%), Gaps = 17/210 (8%)
Query: 333 LDLSDNQLSGSLPSFKFNMPL-LQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFY- 390
+ + L+ S+P+ +P L+L SN+L LP VF L L +L LS+N
Sbjct: 12 IRCNSKGLT-SVPT---GIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSF 66
Query: 391 GEIPSDT-QNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAG---H 446
S + + L+ L L FN + L +LE LD Q++ L+ +
Sbjct: 67 KGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLS 124
Query: 447 LFQLQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLS 505
L L +LD+S + F + L+ L ++ N ++F L L L LS
Sbjct: 125 LRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
Query: 506 NNMFYGEIPSDTPNC-SYLRILVVQFNNFS 534
++ N S L++L + NNF
Sbjct: 184 QCQL-EQLSPTAFNSLSSLQVLNMSHNNFF 212
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 9e-26
Identities = 53/267 (19%), Positives = 89/267 (33%), Gaps = 35/267 (13%)
Query: 84 ELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLY 143
+P S+ L L+SN +L + L
Sbjct: 21 SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTK-------------------LS 58
Query: 144 LSKNMFYGEIPSDIA--NCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTI 201
LS N + + + L+ L L FN + L +LE LD Q++ L+ +
Sbjct: 59 LSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QM 116
Query: 202 PYAG---HLYQLQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRLSAELPTNVFHNLP 257
L L +LD+S + F + L+ L ++ N ++F L
Sbjct: 117 SEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175
Query: 258 FLEELYLSNNMFYGEIPSDT-ANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNR 316
L L LS ++ + S L++L + NNF L L+ LD N
Sbjct: 176 NLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234
Query: 317 LQG--TILYVGHLLQLQWLDLSDNQLS 341
+ L +L+L+ N +
Sbjct: 235 IMTSKKQELQHFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-23
Identities = 59/255 (23%), Positives = 88/255 (34%), Gaps = 32/255 (12%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFS-GSIPASIF-NMSSLLSINFINNA 80
T L + L L+ L L LS N S + +SL ++ N
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89
Query: 81 LFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQ 140
+ + NF L LE L + + +S F N
Sbjct: 90 V-ITMSSNF-LGLEQLEHLDFQHS----------------NLKQMSEFSVFLSLR--NLI 129
Query: 141 QLYLSKNMFYGEIPSDI-ANCSYLRILVLQFNNFSGAIPKEI-SNLTKLEKLDLQYNKLQ 198
L +S + I S L +L + N+F +I + L L LDL +L+
Sbjct: 130 YLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188
Query: 199 GTIPYA--GHLYQLQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRLSAELPTNVFHN 255
+ L LQ L++S N SL +F +K + LQ LD S N + +
Sbjct: 189 -QLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMT-SKKQELQH 245
Query: 256 LP-FLEELYLSNNMF 269
P L L L+ N F
Sbjct: 246 FPSSLAFLNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 2e-16
Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 6/143 (4%)
Query: 403 LRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAG---HLFQLQWLDLSDNQ 459
L L+ N LT+L KL L N L + L++LDLS N
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89
Query: 460 LSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDT-P 518
+ ++ S + L+ LD + L +VF +L L L +S+ +
Sbjct: 90 VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFN 147
Query: 519 NCSYLRILVVQFNNFSGAIPKEI 541
S L +L + N+F +I
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDI 170
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 139 bits (351), Expect = 1e-35
Identities = 87/499 (17%), Positives = 179/499 (35%), Gaps = 57/499 (11%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALF 82
T LNIS ++ S++ +LS L+ L +S N + S+F + L +++
Sbjct: 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL 81
Query: 83 GELPPNFCNHLSNLESLFLKSNMFHG-KIPSTLSSCKRLRETSLSLNDF------FWDHT 135
++ C+ NL+ L L N F I + +L+ LS H
Sbjct: 82 VKIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138
Query: 136 KRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYN 195
+ L L + E P + + L + I +++ +L+ +
Sbjct: 139 NISKVLLVLGETYGEKEDPEGLQD---FNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195
Query: 196 KLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHN 255
++ + Y L + L+ + K L ++ + N L
Sbjct: 196 NIKCVLEDNKCSYFL-------SILAKLQTNPKLSNLTLNNIETTWNSFIRILQ---LVW 245
Query: 256 LPFLEELYLSNNMFYGEIPSDTANCS-----YLRILVLRFNNFSGAIPKEISNLTKLEKL 310
+ +SN G++ + S L I + + F + +
Sbjct: 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305
Query: 311 DLQYNRLQGTILYV-GHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRL-SVEL 368
+ + + + + LD S+N L+ ++ ++ L+ L L N+L +
Sbjct: 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK 365
Query: 369 PTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLE 428
+ + L++L +S N + ++ G S L
Sbjct: 366 IAEMTTQMKSLQQLDISQNS-------------------VSYDEKKGD----CSWTKSLL 402
Query: 429 KLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTEL 488
L++ N L + +++ LDL N++ S+P K+ LQ L+++SN+L + +
Sbjct: 403 SLNMSSNILT-DTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-V 459
Query: 489 PTNVFHNLPFLEELYLSNN 507
P +F L L++++L N
Sbjct: 460 PDGIFDRLTSLQKIWLHTN 478
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 129 bits (325), Expect = 3e-32
Identities = 65/377 (17%), Positives = 130/377 (34%), Gaps = 29/377 (7%)
Query: 153 IPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA-GHLYQLQ 211
+P D++ IL + N S +I +L+KL L + +N++Q +L+
Sbjct: 15 VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72
Query: 212 WLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYG 271
+LDLS N+L + L+ LDLS N A F N+ L+ L LS
Sbjct: 73 YLDLSHNKLV-KISCHPTVN--LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129
Query: 272 EIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRL------------QG 319
A+ + ++L++ + ++ L L
Sbjct: 130 SSVLPIAHLNISKVLLVLGETYG--EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVK 187
Query: 320 TILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNL--P 377
T+ + L+ + S+ + P L L L++ + + +
Sbjct: 188 TVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247
Query: 378 FLEELYLSNNMFYGEIPSDTQNCS-----YLRILVLKFNNFPGAIPKEISNLTKLEKLDL 432
+ +SN G++ + S L I + + F + + +
Sbjct: 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNF 307
Query: 433 QYNRLQGT-IPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLST-ELPT 490
+ + + + LD S+N L+ ++ + L+ L L N+L
Sbjct: 308 TVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIA 367
Query: 491 NVFHNLPFLEELYLSNN 507
+ + L++L +S N
Sbjct: 368 EMTTQMKSLQQLDISQN 384
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 84.1 bits (208), Expect = 2e-17
Identities = 59/301 (19%), Positives = 102/301 (33%), Gaps = 22/301 (7%)
Query: 236 FLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSG 295
+D S N L +P ++ L +S N SD + S LRIL++ N
Sbjct: 4 LVDRSKNGLIH-VPKDLSQKT---TILNISQNYISELWTSDILSLSKLRILIISHNRIQY 59
Query: 296 AIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKF--NMPL 353
+LE LDL +N+L + + L+ LDLS N +LP K NM
Sbjct: 60 LDISVFKFNQELEYLDLSHNKLVK--ISCHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQ 116
Query: 354 LQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNF 413
L+FL LS+ L + H L L E P Q+ L
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD---FNTESLHIVFP 173
Query: 414 PGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPL 473
I +++ +L+ + ++ + + L + L+ + K
Sbjct: 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL-------SILAKLQTNPKLSNLT 226
Query: 474 LQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNF 533
L ++ + N L + +SN G++ + S + + +
Sbjct: 227 LNNIETTWNSFIRILQ---LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQV 283
Query: 534 S 534
Sbjct: 284 V 284
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 6e-34
Identities = 59/220 (26%), Positives = 91/220 (41%), Gaps = 17/220 (7%)
Query: 296 AIPKEISNLTKLEKLDLQYNRLQGTILYVG---HLLQLQWLDLSDNQLSGSLPSFKF-NM 351
A+P I +++ L NR+ + + L L L N L+ + + F +
Sbjct: 25 AVPVGIP--AASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGL 79
Query: 352 PLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDT-QNCSYLRILVLKF 410
LL+ LDLS N + FH L L L+L E+ + + L+ L L+
Sbjct: 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQD 138
Query: 411 NNFPGAIPKEI-SNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPSFK 468
N A+P + +L L L L NR+ A L L L L N+++ +
Sbjct: 139 NAL-QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHA 196
Query: 469 F-KMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
F + L L L +N LS LPT L L+ L L++N
Sbjct: 197 FRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 3e-33
Identities = 57/218 (26%), Positives = 89/218 (40%), Gaps = 13/218 (5%)
Query: 176 AIPKEISNLTKLEKLDLQYNKLQGTIPYA-GHLYQLQWLDLSDNQLSGSLPSFKFK-MPL 233
A+P I +++ L N++ + L L L N L+ + + F + L
Sbjct: 25 AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLAL 81
Query: 234 LQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDT-ANCSYLRILVLRFNN 292
L+ LDLS N + FH L L L+L E+ + L+ L L+ N
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNA 140
Query: 293 FSGAIPKEI-SNLTKLEKLDLQYNRLQGTILYV-GHLLQLQWLDLSDNQLSGSLPSFKF- 349
A+P + +L L L L NR+ L L L L N+++ + F
Sbjct: 141 LQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFR 198
Query: 350 NMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNN 387
++ L L L +N LS LPT L L+ L L++N
Sbjct: 199 DLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 8e-31
Identities = 70/259 (27%), Positives = 97/259 (37%), Gaps = 63/259 (24%)
Query: 210 LQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNM 268
Q + L N++S +P+ F+ L L L SN L+ + F L LE+L LS+N
Sbjct: 34 SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNA 91
Query: 269 FYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQ----GTILYV 324
+ T F G L +L L L LQ G
Sbjct: 92 QLRSVDPAT---------------FHG--------LGRLHTLHLDRCGLQELGPGLF--- 125
Query: 325 GHLLQLQWLDLSDNQLSGSLPSFKF-NMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELY 383
L LQ+L L DN L +LP F ++ L L L NR+S +P F L L+ L
Sbjct: 126 RGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLL 183
Query: 384 LSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY 443
L N R+ + + F +L +L L L N L +P
Sbjct: 184 LHQN----------------RVAHVHPHAF--------RDLGRLMTLYLFANNLS-ALPT 218
Query: 444 A--GHLFQLQWLDLSDNQL 460
L LQ+L L+DN
Sbjct: 219 EALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 2e-23
Identities = 58/245 (23%), Positives = 92/245 (37%), Gaps = 34/245 (13%)
Query: 29 SGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIF-NMSSLLSINFINNALFGELPP 87
L +P + ++ Q + L N S +PA+ F +L + +N L +
Sbjct: 19 PQQGLQ-AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVL-ARIDA 73
Query: 88 NFCNHLSNLESLFLKSNMFHGKIPS-TLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSK 146
L+ LE L L N + T RL L+L +
Sbjct: 74 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT-------------------LHLDR 114
Query: 147 NMFYGEIPSDI-ANCSYLRILVLQFNNFSGAIPKEI-SNLTKLEKLDLQYNKLQGTIPYA 204
E+ + + L+ L LQ N A+P + +L L L L N++ A
Sbjct: 115 CGL-QELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERA 172
Query: 205 -GHLYQLQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSAELPTNVFHNLPFLEEL 262
L+ L L L N+++ + F + L L L +N LSA LPT L L+ L
Sbjct: 173 FRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYL 230
Query: 263 YLSNN 267
L++N
Sbjct: 231 RLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 1e-13
Identities = 50/224 (22%), Positives = 74/224 (33%), Gaps = 48/224 (21%)
Query: 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNAL 81
+T L + L + L+ L+ LDLS N S+ + F
Sbjct: 57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF--------------- 101
Query: 82 FGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQ 141
+ L L +L L P L+
Sbjct: 102 ---------HGLGRLHTLHLDRCGLQELGPGLFRGLAALQY------------------- 133
Query: 142 LYLSKNMFYGEIPSDI-ANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGT 200
LYL N +P D + L L L N S + L L++L L N++
Sbjct: 134 LYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192
Query: 201 IPYA-GHLYQLQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSN 242
P+A L +L L L N LS +LP+ + LQ+L L+ N
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 1e-13
Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 7/122 (5%)
Query: 416 AIPKEISNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPSFKFK-MPL 473
A+P I +++ L NR+ + L L L N L+ + + F + L
Sbjct: 25 AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLAL 81
Query: 474 LQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDT-PNCSYLRILVVQFNN 532
L+ LDLS N + FH L L L+L E+ + L+ L +Q N
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNA 140
Query: 533 FS 534
Sbjct: 141 LQ 142
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIF-NMSSLLSINFINNALF 82
T L + G ++ L SL L L N + + F ++ L+++ N L
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNL- 213
Query: 83 GELPPNFCNHLSNLESLFLKSNMFH 107
LP L L+ L L N +
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPWV 238
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 1e-33
Identities = 63/363 (17%), Positives = 109/363 (30%), Gaps = 99/363 (27%)
Query: 153 IPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAG---HLYQ 209
IPS + ++ L L N + ++ L+ L L N + TI L
Sbjct: 46 IPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIE-EDSFSSLGS 101
Query: 210 LQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNM 268
L+ LDLS N LS +L S F + L FL+L N T++F +L L+ L + N
Sbjct: 102 LEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160
Query: 269 FYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLL 328
+ +I F+G L
Sbjct: 161 TFTKIQRKD---------------FAG-------------------------------LT 174
Query: 329 QLQWLDLSDNQLSGSLPSFKF-NMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNN 387
L+ L++ + L S ++ + L L + + L +E L L +
Sbjct: 175 FLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVECLELRDT 232
Query: 388 MFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHL 447
+ F+ + + + L + +
Sbjct: 233 ----------------DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQI 276
Query: 448 FQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
L L+ S NQL +P +F L L++++L N
Sbjct: 277 SGLLELEFSRNQLKS-------------------------VPDGIFDRLTSLQKIWLHTN 311
Query: 508 MFY 510
+
Sbjct: 312 PWD 314
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 3e-23
Identities = 63/369 (17%), Positives = 112/369 (30%), Gaps = 96/369 (26%)
Query: 27 NISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIF-NMSSLLSINFINNALFGEL 85
S +L +IPS L ++++LDLS N + I S +L ++ +N + +
Sbjct: 37 KGSSGSLN-SIPSGL--TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGI-NTI 91
Query: 86 PPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLS 145
+ + L +LE L L N L ++LS + F
Sbjct: 92 EEDSFSSLGSLEHLDLSYN--------------YL--SNLSSSWF--------------- 120
Query: 146 KNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEI-SNLTKLEKLDLQYNKLQGTIPYA 204
S L L L N + + S+LTKL+ L + I
Sbjct: 121 ------------KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168
Query: 205 --GHLYQLQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSAELPTNVFHNLPFLEE 261
L L+ L++ + L S + + L L + L +E
Sbjct: 169 DFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVEC 226
Query: 262 LYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTI 321
L L + + F+ S + + + L +
Sbjct: 227 LELRDT----------------DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM 270
Query: 322 LYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEE 381
+ + L L+ S NQL +P +F L L++
Sbjct: 271 KLLNQISGLLELEFSRNQLKS-------------------------VPDGIFDRLTSLQK 305
Query: 382 LYLSNNMFY 390
++L N +
Sbjct: 306 IWLHTNPWD 314
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 7e-33
Identities = 73/299 (24%), Positives = 118/299 (39%), Gaps = 45/299 (15%)
Query: 209 QLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNM 268
L++ ++ L+ +LP + L + N L+ LP P L L +S N
Sbjct: 41 GNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPAL----PPELRTLEVSGNQ 92
Query: 269 FYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLL 328
+P L I + +P S L KL + N+L
Sbjct: 93 LT-SLPVLPPGLLELSIFSNPLTH----LPALPSGLCKL---WIFGNQLTS---LPVLPP 141
Query: 329 QLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNM 388
LQ L +SDNQL+ SLP+ L L +N+L+ LP L+EL +S+N
Sbjct: 142 GLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQLT-SLPML----PSGLQELSVSDNQ 192
Query: 389 FYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLF 448
+P+ L + + P + + L++L + NRL ++P
Sbjct: 193 L-ASLPTLPSELYKLWAYNNRLTSLP-------ALPSGLKELIVSGNRLT-SLP--VLPS 241
Query: 449 QLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
+L+ L +S N+L+ SLP L L + N+L T LP + +L + L N
Sbjct: 242 ELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQL-TRLPES-LIHLSSETTVNLEGN 294
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 128 bits (322), Expect = 1e-31
Identities = 74/364 (20%), Positives = 119/364 (32%), Gaps = 73/364 (20%)
Query: 140 QQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQG 199
L + N +P+ LR L + N + ++P L +L L
Sbjct: 64 TTLVIPDN-NLTSLPALPPE---LRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPA 118
Query: 200 TIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFL 259
L L + NQL+ SLP P LQ L +S N+L+ LP L
Sbjct: 119 LPS------GLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA-SLPAL----PSEL 163
Query: 260 EELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQG 319
+L+ NN +P S L+ L + N + ++P S L KL + + L
Sbjct: 164 CKLWAYNNQL-TSLP---MLPSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPA 218
Query: 320 TILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFL 379
L+ L +S N+L+ SLP L+ L +S NRL+ LP L
Sbjct: 219 LPS------GLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML----PSGL 263
Query: 380 EELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQG 439
L + N +P+ + +L+ ++L+ N L
Sbjct: 264 LSLSVYRNQL-------------------------TRLPESLIHLSSETTVNLEGNPLS- 297
Query: 440 TIPYAGHLFQLQWLDLSDNQLS------GSLPSFKFKMPLLQFLDLSSNRLSTELPTNVF 493
++ + S P + L L R P + +
Sbjct: 298 ERTLQAL-REITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRW 356
Query: 494 HNLP 497
H
Sbjct: 357 HMFG 360
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 2e-31
Identities = 75/393 (19%), Positives = 130/393 (33%), Gaps = 72/393 (18%)
Query: 44 LSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKS 103
+ L++ + + ++P + + ++ +N L LP L +L +
Sbjct: 39 NNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNL-TSLPAL----PPELRTLEVSG 90
Query: 104 NMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYL 163
N +P L S L + +L++ N +P L
Sbjct: 91 NQLT-SLPVLPPGLLELSIFSNPLTHLPALPS--GLCKLWIFGNQL-TSLPVLPPG---L 143
Query: 164 RILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGS 223
+ L + N + ++P S L KL N+L ++P LQ L +SDNQL+ S
Sbjct: 144 QELSVSDNQLA-SLPALPSELC---KLWAYNNQLT-SLPM--LPSGLQELSVSDNQLA-S 195
Query: 224 LPSFKFKMPLLQFLDLSSNRLSA--ELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCS 281
LP+ L L +NRL++ LP+ L+EL +S N
Sbjct: 196 LPTL---PSELYKLWAYNNRLTSLPALPSG-------LKELIVSGNRL------------ 233
Query: 282 YLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLL-QLQWLDLSDNQL 340
++P S L +L + NRL + L L L + NQL
Sbjct: 234 -------------TSLPVLPSELK---ELMVSGNRLT----SLPMLPSGLLSLSVYRNQL 273
Query: 341 SGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNC 400
+ LP ++ ++L N LS E + F S +
Sbjct: 274 T-RLPESLIHLSSETTVNLEGNPLS-ERTLQALREITSAPGYSGPIIRFDMAGASAPRET 331
Query: 401 SYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQ 433
L + + A E + + +
Sbjct: 332 RALHLAAA--DWLVPAREGEPAPADRWHMFGQE 362
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 2e-29
Identities = 77/359 (21%), Positives = 130/359 (36%), Gaps = 46/359 (12%)
Query: 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSL-LSINFINNALF 82
LN+ LT T+P L + TL + N + S+PA + +L +S N +
Sbjct: 43 AVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPPELRTLEVSGNQLT---- 94
Query: 83 GELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQL 142
LP L L +P+ S +L L Q+L
Sbjct: 95 -SLPVLPPG-LLELSIFSNPLT----HLPALPSGLCKLWIFGNQLTSL--PVLPPGLQEL 146
Query: 143 YLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIP 202
+S N +P+ + L L N + ++P S L +L + N+L ++P
Sbjct: 147 SVSDNQL-ASLPALPSE---LCKLWAYNNQLT-SLPMLPSGLQEL---SVSDNQLA-SLP 197
Query: 203 YAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEEL 262
+L L +N+L+ SLP+ L+ L +S NRL+ LP L+EL
Sbjct: 198 --TLPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL----PSELKEL 246
Query: 263 YLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTIL 322
+S N +P S L L + N + +P+ + +L+ ++L+ N L L
Sbjct: 247 MVSGNRL-TSLP---MLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301
Query: 323 YVGHLLQLQWLD----LSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLP 377
+ + + S P + L L R P + +H
Sbjct: 302 QALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFG 360
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 80.3 bits (198), Expect = 5e-16
Identities = 42/188 (22%), Positives = 68/188 (36%), Gaps = 29/188 (15%)
Query: 354 LQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNF 413
L++ + L+ LP + ++ L + +N +P+ LR L + N
Sbjct: 42 NAVLNVGESGLT-TLPDCLPAHI---TTLVIPDN-NLTSLPA---LPPELRTLEVSGNQL 93
Query: 414 PGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPL 473
++P L +L L L L + NQL+ SLP P
Sbjct: 94 -TSLPVLPPGLLELSIFSNPLTHLPALPS------GLCKLWIFGNQLT-SLPVL---PPG 142
Query: 474 LQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNF 533
LQ L +S N+L LP L +L+ NN +P L+ L V N
Sbjct: 143 LQELSVSDNQL-ASLPA----LPSELCKLWAYNNQL-TSLPMLPSG---LQELSVSDNQL 193
Query: 534 SGAIPKEI 541
+ ++P
Sbjct: 194 A-SLPTLP 200
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 4e-31
Identities = 69/386 (17%), Positives = 125/386 (32%), Gaps = 49/386 (12%)
Query: 138 NWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKL 197
N+ + + L L ++ + I LT L KL N +
Sbjct: 19 NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNI 76
Query: 198 QGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLP 257
T L +L N+L+ +L L +L+ +N+L+ P
Sbjct: 77 --TTLDLSQNTNLTYLACDSNKLT-NLDVTPLTK--LTYLNCDTNKLT----KLDVSQNP 127
Query: 258 FLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRL 317
L L + N D ++ + L L N + ++ T+L LD +N++
Sbjct: 128 LLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKI 182
Query: 318 QGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLP 377
T L V L L+ N ++ L L FLD SSN+L+ E+ L
Sbjct: 183 --TELDVSQNKLLNRLNCDTNNIT-KLDLN--QNIQLTFLDCSSNKLT-EID---VTPLT 233
Query: 378 FLEELYLSNNMFYGEIPSDTQNCSYLRI----------------LVLKFNNFPGAIPKEI 421
L S N S + L + + ++
Sbjct: 234 QLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDV 293
Query: 422 SNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSS 481
++ T+L LD Q + + +L +L L++ +L+ L L+ L +
Sbjct: 294 THNTQLYLLDCQAAGIT-ELD-LSQNPKLVYLYLNNTELT-ELDV--SHNTKLKSLSCVN 348
Query: 482 NRLSTELPTNVFHNLPFLEELYLSNN 507
+ + +P L + +
Sbjct: 349 AHIQD---FSSVGKIPALNNNFEAEG 371
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 3e-26
Identities = 89/503 (17%), Positives = 159/503 (31%), Gaps = 98/503 (19%)
Query: 26 LNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGEL 85
+ + T L++L +LD + + + I ++ L + +N + L
Sbjct: 23 EVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSNNI-TTL 79
Query: 86 PPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLS 145
+ +NL L SN T+L + L
Sbjct: 80 DL---SQNTNLTYLACDSNKL----------------TNLDVTPL------TKLTYLNCD 114
Query: 146 KNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAG 205
N D++ L L N + ++S+ T+L +LD NK T
Sbjct: 115 TNKL---TKLDVSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKI-TKLDVT 167
Query: 206 HLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLS 265
QL LD S N+++ S + LL L+ +N ++ +L + L L S
Sbjct: 168 PQTQLTTLDCSFNKITELDVS---QNKLLNRLNCDTNNIT-KLD---LNQNIQLTFLDCS 220
Query: 266 NNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVG 325
+N D + L N + + +S L+KL L L + +
Sbjct: 221 SNKLTE---IDVTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDL--LEIDLT 272
Query: 326 HLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLS 385
H QL + + L + L LD + ++ EL P L LYL+
Sbjct: 273 HNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT-ELD---LSQNPKLVYLYLN 326
Query: 386 NNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAG 445
N + +S+ TKL+ L +Q G
Sbjct: 327 NT---------------------ELTELD------VSHNTKLKSLSCVNAHIQ-DFSSVG 358
Query: 446 HLFQLQWLDLSDNQLSGSLPSFKFKMPLLQF------LDLSSNRLSTELPTNVFHNLPFL 499
+ L ++ Q ++P L LD N ++ E ++
Sbjct: 359 KIPALNNNFEAEGQTI-TMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQA-- 415
Query: 500 EELYLSNNMFYGEIPSDTPNCSY 522
+N + + + +D P +Y
Sbjct: 416 -----TNTITWENLSTDNPAVTY 433
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 3e-16
Identities = 64/363 (17%), Positives = 104/363 (28%), Gaps = 77/363 (21%)
Query: 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFG 83
T LN LT ++ L L+ + N + I S + + L ++ N
Sbjct: 109 TYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLT-EIDVS--HNTQLTELDCHLNKKIT 162
Query: 84 ELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLY 143
+L + L +L N T L
Sbjct: 163 KLD---VTPQTQLTTLDCSFNKI----------------TEL------------------ 185
Query: 144 LSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPY 203
D++ L L NN + +++ +L LD NKL I
Sbjct: 186 ------------DVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT-EID- 228
Query: 204 AGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELY 263
L QL + D S N L+ L L L L E+ + L
Sbjct: 229 VTPLTQLTYFDCSVNPLT-ELDVSTLSK--LTTLHCIQTDLL-EID---LTHNTQLIYFQ 281
Query: 264 LSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILY 323
E+ D + + L +L + + ++S KL L L L T L
Sbjct: 282 AEGCRKIKEL--DVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTEL--TELD 334
Query: 324 VGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELY 383
V H +L+ L + + S +P L + + +P N +
Sbjct: 335 VSHNTKLKSLSCVNAHIQ-DFSSVG-KIPALNNNFEAEGQTI-TMPKETLTNNSLTIAVS 391
Query: 384 LSN 386
Sbjct: 392 PDL 394
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 5e-31
Identities = 64/247 (25%), Positives = 100/247 (40%), Gaps = 44/247 (17%)
Query: 152 EIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAG---HLY 208
+IP ++ + L L FN + +L+ LDL ++Q TI G L
Sbjct: 21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIE-DGAYQSLS 76
Query: 209 QLQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNN 267
L L L+ N + SL F + LQ L L+ L +L L+EL +++N
Sbjct: 77 HLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHN 134
Query: 268 MFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVG-- 325
I +P+ SNLT LE LDL N++ +Y
Sbjct: 135 ----------------LIQSF-------KLPEYFSNLTNLEHLDLSSNKI--QSIYCTDL 169
Query: 326 -HLLQLQW----LDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLE 380
L Q+ LDLS N ++ + F L+ L L +N+L +P +F L L+
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKS-VPDGIFDRLTSLQ 227
Query: 381 ELYLSNN 387
+++L N
Sbjct: 228 KIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 9e-29
Identities = 63/278 (22%), Positives = 102/278 (36%), Gaps = 77/278 (27%)
Query: 234 LQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNF 293
+ LDLS N L L + F + P L+ L LS I + +
Sbjct: 30 TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRC----------------EIQTIEDGAY 72
Query: 294 SGAIPKEISNLTKLEKLDLQYNRLQGTILYVG---HLLQLQWLDLSDNQLSGSLPSFKF- 349
L+ L L L N + L +G L LQ L + L+ SL +F
Sbjct: 73 QS--------LSHLSTLILTGNPI--QSLALGAFSGLSSLQKLVAVETNLA-SLENFPIG 121
Query: 350 NMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLK 409
++ L+ L+++ N + F NL LE L LS+N +I +
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN----------------KIQSIY 165
Query: 410 FNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKF 469
+ L ++ L+L LDLS N ++ + F
Sbjct: 166 CTDL--------RVLHQMPLLNLS-------------------LDLSLNPMN-FIQPGAF 197
Query: 470 KMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
K L+ L L +N+L + +P +F L L++++L N
Sbjct: 198 KEIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 3e-24
Identities = 52/221 (23%), Positives = 82/221 (37%), Gaps = 40/221 (18%)
Query: 330 LQWLDLSDNQLSGSLPSFKF-NMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNM 388
+ LDLS N L L S+ F + P LQ LDLS + + + +L L L L+ N
Sbjct: 30 TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGN- 86
Query: 389 FYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY--AGH 446
+ S L+ L+KL L ++ GH
Sbjct: 87 --------------------PIQSLALGAF---SGLSSLQKLVAVETNLA-SLENFPIGH 122
Query: 447 LFQLQWLDLSDNQLSGSLPSFKF--KMPLLQFLDLSSNRLSTELPTNVFHNLPFLE---- 500
L L+ L+++ N + S ++ + L+ LDLSSN++ + L +
Sbjct: 123 LKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNL 180
Query: 501 ELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPKEI 541
L LS N I L+ L + N ++P I
Sbjct: 181 SLDLSLNPM-NFIQPGAFKEIRLKELALDTNQLK-SVPDGI 219
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 6e-18
Identities = 60/247 (24%), Positives = 92/247 (37%), Gaps = 35/247 (14%)
Query: 29 SGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIF-NMSSLLSINFINNALFGELPP 87
LN IP L S + LDLSFN + + F + L ++ + +
Sbjct: 15 MELNFY-KIPDNL--PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEI-QTIED 69
Query: 88 NFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKN 147
LS+L +L L N S L++ L
Sbjct: 70 GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-----------NLASLENF 118
Query: 148 MFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEI-SNLTKLEKLDLQYNKLQGTIPYA-- 204
+ L+ L + N E SNLT LE LDL NK+Q +I
Sbjct: 119 PI--------GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDL 169
Query: 205 GHLYQLQW----LDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLE 260
L+Q+ LDLS N ++ + FK L+ L L +N+L + +P +F L L+
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKS-VPDGIFDRLTSLQ 227
Query: 261 ELYLSNN 267
+++L N
Sbjct: 228 KIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 2e-12
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 416 AIPKEISNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPSFKF-KMPL 473
IP + + LDL +N L+ Y+ +LQ LDLS ++ ++ + +
Sbjct: 21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH 77
Query: 474 LQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
L L L+ N + L F L L++L
Sbjct: 78 LSTLILTGNPI-QSLALGAFSGLSSLQKLVAVET 110
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 5e-29
Identities = 100/547 (18%), Positives = 174/547 (31%), Gaps = 98/547 (17%)
Query: 7 SVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIF 66
++ G + ++ S NLT +P +L + L LS N S
Sbjct: 17 ALALIVGSMTPFSNELESMVDYSNRNLT-HVPKDL--PPRTKALSLSQNSIS-------- 65
Query: 67 NMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLS 126
EL + LS L L L N + L
Sbjct: 66 -----------------ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDL------ 102
Query: 127 LNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNF-SGAIPKEISNLT 185
+ L +S N I + LR L L FN+F + KE NLT
Sbjct: 103 -------------EYLDVSHNRL-QNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLT 146
Query: 186 KLEKLDLQYNKLQGT--IPYAGHLYQLQWLDLSDNQLS-GSLPSFKFKMPLLQFLDLSSN 242
KL L L K + +P A LDL + G S + + L N
Sbjct: 147 KLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPN 206
Query: 243 RLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSD-------------------------- 276
L + + L L+ + N +
Sbjct: 207 SLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS 266
Query: 277 -----TANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYV------G 325
+ L + + I +E ++ L ++ +
Sbjct: 267 VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYS 326
Query: 326 HLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLS 385
++ LS + + FL+ + N + + L L+ L L
Sbjct: 327 VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQ 385
Query: 386 NNMF--YGEIPSDTQNCSYLRILVLKFNNFP-GAIPKEISNLTKLEKLDLQYNRLQGTIP 442
N + ++ T+N S L L + N+ A + + + L+L N L G++
Sbjct: 386 RNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF 445
Query: 443 YAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEEL 502
+++ LDL +N++ S+P + LQ L+++SN+L + +P VF L L+ +
Sbjct: 446 RCLPP-KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYI 502
Query: 503 YLSNNMF 509
+L +N +
Sbjct: 503 WLHDNPW 509
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 113 bits (283), Expect = 9e-27
Identities = 90/442 (20%), Positives = 155/442 (35%), Gaps = 59/442 (13%)
Query: 140 QQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEI-SNLTKLEKLDLQYNKLQ 198
+ L LS+N DI+ S LR+L L N ++ + LE LD+ +N+LQ
Sbjct: 55 KALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ 113
Query: 199 GTIPYAGHLYQLQWLDLSDNQLSGSLPSFKF--KMPLLQFLDLSSNRLSA---------- 246
I + L+ LDLS N LP K + L FL LS+ +
Sbjct: 114 -NIS-CCPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLH 170
Query: 247 -----------ELPTNVFHNLPFLEELYL-----SNNMFYGEIPSDTANCSYLRILVLRF 290
+ +L L N++F ++ +L++ ++
Sbjct: 171 LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKL 230
Query: 291 NNFSGAIPKEISN--LTKLEKLDLQYNRLQGTILYVGHLLQLQW------LDLSDNQLSG 342
N+ + + L++ ++ T L Q W L++ + ++
Sbjct: 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE 290
Query: 343 SLPSFKFN-----MPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDT 397
+ +F + L + + ++ + LS +
Sbjct: 291 RIDREEFTYSETALKSLMIEHVKNQVFLF-SKEALYSVFAEMNIKMLSISDTPFIHMVCP 349
Query: 398 QNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSD 457
+ S L N F ++ + S L +L+ L LQ N L+ A + L+ D
Sbjct: 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409
Query: 458 NQLSGSLPSFKFKM-----PLLQFLDLSSNRLSTELPTNVFHNLPF-LEELYLSNNMFYG 511
L+ SL S + + L+LSSN L +VF LP ++ L L NN
Sbjct: 410 VSLN-SLNSHAYDRTCAWAESILVLNLSSNM----LTGSVFRCLPPKVKVLDLHNNRI-M 463
Query: 512 EIPSDTPNCSYLRILVVQFNNF 533
IP D + L+ L V N
Sbjct: 464 SIPKDVTHLQALQELNVASNQL 485
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 2e-26
Identities = 74/403 (18%), Positives = 136/403 (33%), Gaps = 28/403 (6%)
Query: 153 IPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA--GHLYQL 210
+P D+ + L L N+ S +IS L++L L L +N+++ ++ + L
Sbjct: 46 VPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDL 102
Query: 211 QWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFY 270
++LD+S N+L ++ L+ LDLS N F NL L L LS F
Sbjct: 103 EYLDVSHNRLQ-NISCCPMAS--LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159
Query: 271 GEIPSDTANCSYLRILVLRFNNFSG-AIPKEISNLTKLEKLDLQYNRLQ------GTILY 323
++ +L ++L ++ E + L L ++ +
Sbjct: 160 -QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVN 218
Query: 324 VGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNV----FHNLPFL 379
LQL + L+D + L+++ + +V F +
Sbjct: 219 ALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV 278
Query: 380 EELYLSNNMFYGEIPSDTQNCS-----YLRILVLKFNNFPGAIPKEISNLTKLEKLDLQY 434
E L + N I + S L I +K F + S ++ L
Sbjct: 279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338
Query: 435 NRLQG-TIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLST-ELPTNV 492
+ + +L+ + N + S+ + LQ L L N L +
Sbjct: 339 SDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALM 398
Query: 493 FHNLPFLEELYLSNNMF-YGEIPSDTPNCSYLRILVVQFNNFS 534
N+ LE L +S N + +L + N +
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 1e-28
Identities = 69/240 (28%), Positives = 88/240 (36%), Gaps = 42/240 (17%)
Query: 249 PTNVFHNLPFLEELYLSNNMFY---GEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLT 305
P + E+ ++P DT IL L N + T
Sbjct: 2 PICEVSKVASHLEVNCDKRNLTALPPDLPKDT------TILHLSENLLYTFSLATLMPYT 55
Query: 306 KLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLS 365
+L +L+L L + G L L LDLS NQL SLP +P L LD+S NRL+
Sbjct: 56 RLTQLNLDRAELT-KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113
Query: 366 VELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLT 425
LP L L+ELYL N +P +
Sbjct: 114 -SLPLGALRGLGELQELYLKGNEL-KTLPPGL---------------L--------TPTP 148
Query: 426 KLEKLDLQYNRLQGTIPYAG---HLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSN 482
KLEKL L N L +P AG L L L L +N L ++P F LL F L N
Sbjct: 149 KLEKLSLANNNLT-ELP-AGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 5e-25
Identities = 51/180 (28%), Positives = 75/180 (41%), Gaps = 17/180 (9%)
Query: 333 LDLSDNQLSGSLPSFKFNMPL-LQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYG 391
++ L+ +LP ++P L LS N L L +L L
Sbjct: 15 VNCDKRNLT-ALPP---DLPKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAEL-T 68
Query: 392 EIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAG---HLF 448
++ D L L L N ++P L L LD+ +NRL ++P G L
Sbjct: 69 KLQVDGTLPV-LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLP-LGALRGLG 124
Query: 449 QLQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
+LQ L L N+L +LP P L+ L L++N L TELP + + L L+ L L N
Sbjct: 125 ELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQEN 182
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 1e-18
Identities = 49/253 (19%), Positives = 78/253 (30%), Gaps = 59/253 (23%)
Query: 43 NLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLK 102
++S ++ + ++P + ++ N L + L L L
Sbjct: 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLL-YTFSLATLMPYTRLTQLNLD 63
Query: 103 SNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSY 162
L+
Sbjct: 64 RA-------------------ELTKLQVDGTLPV-------------------------- 78
Query: 163 LRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAG---HLYQLQWLDLSDNQ 219
L L L N ++P L L LD+ +N+L ++P G L +LQ L L N+
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLP-LGALRGLGELQELYLKGNE 135
Query: 220 LSGSLPSFKF-KMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTA 278
L +LP P L+ L L++N L+ LP + + L L+ L L N Y IP
Sbjct: 136 LK-TLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYT-IPKGFF 192
Query: 279 NCSYLRILVLRFN 291
L L N
Sbjct: 193 GSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 4e-09
Identities = 45/205 (21%), Positives = 68/205 (33%), Gaps = 22/205 (10%)
Query: 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIF-NMSSLLSINFINNALF 82
+N NLT +P +L L LS N + + + L +N L
Sbjct: 13 LEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAEL- 67
Query: 83 GELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLN-------DFFWDHT 135
+L + L L +L L N +P + L +S N
Sbjct: 68 TKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 136 KRNWQQLYLSKNMFYGEIPSDI-ANCSYLRILVLQFNNFSGAIPKEI-SNLTKLEKLDLQ 193
Q+LYL N +P + L L L NN + +P + + L L+ L LQ
Sbjct: 125 --ELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQ 180
Query: 194 YNKLQGTIPYAGHLYQLQWLDLSDN 218
N L + L + L N
Sbjct: 181 ENSLYTIPKGFFGSHLLPFAFLHGN 205
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 3e-27
Identities = 71/220 (32%), Positives = 101/220 (45%), Gaps = 42/220 (19%)
Query: 296 AIPKEISNLTKLEKLDLQYNRLQGTILYVG---HLLQLQWLDLSDNQLSGSLPSFKFN-M 351
AIP I +KLDLQ N+L + L L +L+ L L+DN+L +LP+ F +
Sbjct: 30 AIPSNIP--ADTKKLDLQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKEL 84
Query: 352 PLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFN 411
L+ L ++ N+L LP VF L L EL L N +
Sbjct: 85 KNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRN---------------------QLK 122
Query: 412 NFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAG---HLFQLQWLDLSDNQLSGSLPSFK 468
+ P + +LTKL L L YN LQ ++P G L L+ L L +NQL +P
Sbjct: 123 SLPPRVF---DSLTKLTYLSLGYNELQ-SLP-KGVFDKLTSLKELRLYNNQLK-RVPEGA 176
Query: 469 F-KMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
F K+ L+ L L +N+L +P F +L L+ L L N
Sbjct: 177 FDKLTELKTLKLDNNQL-KRVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 6e-24
Identities = 57/185 (30%), Positives = 84/185 (45%), Gaps = 37/185 (20%)
Query: 330 LQWLDLSDNQLSGSLPSFKF-NMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNM 388
+ LDL N+LS SLPS F + L+ L L+ N+L LP +F L LE L++++N
Sbjct: 39 TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK 96
Query: 389 FYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEI-SNLTKLEKLDLQYNRLQGTIPYAG-- 445
A+P + L L +L L N+L+ ++P
Sbjct: 97 L-------------------------QALPIGVFDQLVNLAELRLDRNQLK-SLP-PRVF 129
Query: 446 -HLFQLQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELY 503
L +L +L L N+L SLP F K+ L+ L L +N+L +P F L L+ L
Sbjct: 130 DSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLK 187
Query: 504 LSNNM 508
L NN
Sbjct: 188 LDNNQ 192
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 7e-23
Identities = 69/240 (28%), Positives = 94/240 (39%), Gaps = 64/240 (26%)
Query: 153 IPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAG---HLYQ 209
IP+D + L LQ N S K LTKL L L NKLQ T+P AG L
Sbjct: 35 IPAD------TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLP-AGIFKELKN 86
Query: 210 LQWLDLSDNQLSGSLPSFKFKMPL-LQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNM 268
L+ L ++DN+L +LP F + L L L N+L + LP VF +L L L L N
Sbjct: 87 LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYN- 143
Query: 269 FYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLL 328
+ L F LT L++L L N+L+
Sbjct: 144 ---------------ELQSLPKGVFDK--------LTSLKELRLYNNQLK---------- 170
Query: 329 QLQWLDLSDNQLSGSLPSFKF-NMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNN 387
+P F + L+ L L +N+L +P F +L L+ L L N
Sbjct: 171 --------------RVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 6e-16
Identities = 71/267 (26%), Positives = 104/267 (38%), Gaps = 67/267 (25%)
Query: 7 SVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIF 66
VC +C+ V + S LT IPS + + LDL N S S+P+ F
Sbjct: 10 GVC-----SCNNNKNSV---DCSSKKLT-AIPS--NIPADTKKLDLQSNKLS-SLPSKAF 57
Query: 67 -NMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSL 125
++ L + +N L LP L NLE+L++ N +L
Sbjct: 58 HRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKL----------------QAL 100
Query: 126 SLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEI-SNL 184
+ F L L L L N ++P + +L
Sbjct: 101 PIGVF-----------DQLVN----------------LAELRLDRNQLK-SLPPRVFDSL 132
Query: 185 TKLEKLDLQYNKLQGTIPYAG---HLYQLQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLS 240
TKL L L YN+LQ ++P G L L+ L L +NQL +P F K+ L+ L L
Sbjct: 133 TKLTYLSLGYNELQ-SLP-KGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLD 189
Query: 241 SNRLSAELPTNVFHNLPFLEELYLSNN 267
+N+L +P F +L L+ L L N
Sbjct: 190 NNQLK-RVPEGAFDSLEKLKMLQLQEN 215
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 3e-25
Identities = 55/257 (21%), Positives = 101/257 (39%), Gaps = 22/257 (8%)
Query: 181 ISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLS 240
+ K +L+ + + L + + +++ + S+ + +P + L L+
Sbjct: 17 DDAFAETIKDNLKKKSVTDAVTQN-ELNSIDQIIANNSDIK-SVQGIQ-YLPNVTKLFLN 73
Query: 241 SNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIP--SDTANCSYLRILVLRFNNFSGAIP 298
N+L+ P NL L L+L N +I S + L+ L L N S
Sbjct: 74 GNKLTDIKP---LTNLKNLGWLFLDEN----KIKDLSSLKDLKKLKSLSLEHNGISDING 126
Query: 299 KEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLD 358
+ +L +LE L L N++ I + L +L L L DNQ+S + + LQ L
Sbjct: 127 --LVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQIS-DIVPLA-GLTKLQNLY 181
Query: 359 LSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIP 418
LS N +S L L+ L L + + + N + + P
Sbjct: 182 LSKNHISD---LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV--TP 236
Query: 419 KEISNLTKLEKLDLQYN 435
+ IS+ EK +++++
Sbjct: 237 EIISDDGDYEKPNVKWH 253
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 8e-23
Identities = 60/256 (23%), Positives = 97/256 (37%), Gaps = 40/256 (15%)
Query: 255 NLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQY 314
+ L + + + + ++ ++ + I L + KL L
Sbjct: 19 AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNG 74
Query: 315 NRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFH 374
N+L I + +L L WL L +N++ L S K ++ L+ L L N +S N
Sbjct: 75 NKLT-DIKPLTNLKNLGWLFLDENKIK-DLSSLK-DLKKLKSLSLEHNGISD---INGLV 128
Query: 375 NLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQY 434
+LP LE LYL NN +I + +S LTKL+ L L+
Sbjct: 129 HLPQLESLYLGNN----------------KITDITV----------LSRLTKLDTLSLED 162
Query: 435 NRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFH 494
N++ I L +LQ L LS N +S L + + L L+L S P N
Sbjct: 163 NQIS-DIVPLAGLTKLQNLYLSKNHIS-DLRALA-GLKNLDVLELFSQEC-LNKPINHQS 218
Query: 495 NLPFLEELYLSNNMFY 510
NL + ++
Sbjct: 219 NLVVPNTVKNTDGSLV 234
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 99.8 bits (248), Expect = 2e-22
Identities = 49/235 (20%), Positives = 90/235 (38%), Gaps = 20/235 (8%)
Query: 301 ISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLS 360
+ K +L+ + + L + + +++ + S+ + +P + L L+
Sbjct: 17 DDAFAETIKDNLKKKSVT-DAVTQNELNSIDQIIANNSDIK-SVQGIQ-YLPNVTKLFLN 73
Query: 361 SNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIP--SDTQNCSYLRILVLKFNNFPGAIP 418
N+L+ P NL L L+L N +I S ++ L+ L L+ N +
Sbjct: 74 GNKLTDIKP---LTNLKNLGWLFLDEN----KIKDLSSLKDLKKLKSLSLEHNGI--SDI 124
Query: 419 KEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLD 478
+ +L +LE L L N++ I L +L L L DNQ+S + + LQ L
Sbjct: 125 NGLVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQIS-DIVPLA-GLTKLQNLY 181
Query: 479 LSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNF 533
LS N +S L L+ L L + + + N + +
Sbjct: 182 LSKNHISD---LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 99.0 bits (246), Expect = 4e-22
Identities = 64/273 (23%), Positives = 104/273 (38%), Gaps = 42/273 (15%)
Query: 140 QQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQG 199
+ L K + + + ++ ++ + I L + KL L NKL
Sbjct: 24 IKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT- 78
Query: 200 TIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFL 259
I +L L WL L +N++ L S K + L+ L L N +S N +LP L
Sbjct: 79 DIKPLTNLKNLGWLFLDENKIK-DLSSLK-DLKKLKSLSLEHNGISD---INGLVHLPQL 133
Query: 260 EELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQG 319
E LYL NN +I + +S LTKL+ L L+ N++
Sbjct: 134 ESLYLGNN----------------KITDITV----------LSRLTKLDTLSLEDNQIS- 166
Query: 320 TILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFL 379
I+ + L +LQ L LS N +S L + + L L+L S + P N NL
Sbjct: 167 DIVPLAGLTKLQNLYLSKNHIS-DLRALA-GLKNLDVLELFSQEC-LNKPINHQSNLVVP 223
Query: 380 EELYLSNNMFYGEIPSDTQNCSYLRILVLKFNN 412
+ ++ P + +K++
Sbjct: 224 NTVKNTDGSLV--TPEIISDDGDYEKPNVKWHL 254
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 76.7 bits (188), Expect = 6e-15
Identities = 58/297 (19%), Positives = 105/297 (35%), Gaps = 70/297 (23%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALF 82
N+ ++T + L+S+ + + + I ++ +
Sbjct: 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNS--------DIKSVQGI----------- 61
Query: 83 GELPPNFCNHLSNLESLFLKSNMFHGKIP--STLSSCKRLRETSLSLNDFFWDHTKRNWQ 140
+L N+ LFL N K+ L++ K L
Sbjct: 62 --------QYLPNVTKLFLNGN----KLTDIKPLTNLKNLGW------------------ 91
Query: 141 QLYLSKNMFYGEIP--SDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQ 198
L+L +N +I S + + L+ L L+ N S + +L +LE L L NK+
Sbjct: 92 -LFLDEN----KIKDLSSLKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKIT 144
Query: 199 GTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPF 258
I L +L L L DNQ+S + + LQ L LS N +S L
Sbjct: 145 -DITVLSRLTKLDTLSLEDNQIS-DIVPLA-GLTKLQNLYLSKNHISD---LRALAGLKN 198
Query: 259 LEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYN 315
L+ L L + + + +N + + P+ IS+ EK +++++
Sbjct: 199 LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV--TPEIISDDGDYEKPNVKWH 253
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 6e-25
Identities = 56/280 (20%), Positives = 102/280 (36%), Gaps = 45/280 (16%)
Query: 213 LDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGE 272
+++++ +PS L +L + F LE++ +S N
Sbjct: 14 FLCQESKVT-EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEV 69
Query: 273 IPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQ-YNRLQGTILYVG---HLL 328
I +D SNL KL ++ ++ N L + +L
Sbjct: 70 IEADV-----------------------FSNLPKLHEIRIEKANNL--LYINPEAFQNLP 104
Query: 329 QLQWLDLSDNQLSGSLPSFKF-NMPLLQFLDLSSNRLSVELPTNVFHNLPF-LEELYLSN 386
LQ+L +S+ + LP + LD+ N + N F L F L+L+
Sbjct: 105 NLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163
Query: 387 NMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEI-SNLTKLEKLDLQYNRLQGTIPYAG 445
N EI + N + L L L NN +P ++ + LD+ R+ ++P G
Sbjct: 164 NGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYG 221
Query: 446 --HLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNR 483
+L +L+ + + LP+ + K+ L L+
Sbjct: 222 LENLKKLRARSTYNLK---KLPTLE-KLVALMEASLTYPS 257
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 93.0 bits (231), Expect = 8e-21
Identities = 49/231 (21%), Positives = 86/231 (37%), Gaps = 13/231 (5%)
Query: 140 QQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEI-SNLTKLEKLDLQ-YNKL 197
+L + L + + N+ I ++ SNL KL ++ ++ N L
Sbjct: 33 IELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 92
Query: 198 QGTIPYA-GHLYQLQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSAELPTNVFHN 255
P A +L LQ+L +S+ + LP LD+ N + N F
Sbjct: 93 LYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151
Query: 256 LPF-LEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEI-SNLTKLEKLDLQ 313
L F L+L+ N EI + N + L L L NN +P ++ + LD+
Sbjct: 152 LSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 210
Query: 314 YNRLQGTILYV-GHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNR 363
R+ Y +L +L+ + + LP+ + + L L+
Sbjct: 211 RTRIHSLPSYGLENLKKLRARSTYNLK---KLPTLE-KLVALMEASLTYPS 257
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 89.1 bits (221), Expect = 2e-19
Identities = 52/249 (20%), Positives = 85/249 (34%), Gaps = 28/249 (11%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIF-NMSSLLSINFINNAL 81
L L V L+ +++S N I A +F N+ L I
Sbjct: 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91
Query: 82 FGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQ 141
+ P +L NL+ L + + +P + L++ L + D N
Sbjct: 92 LLYINPEAFQNLPNLQYLLISNTGIK-HLPD-VHKIHSLQKVLLDIQD--------NINI 141
Query: 142 LYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDL-QYNKLQGT 200
+ +N F G IL L N I N T+L++L+L N L+
Sbjct: 142 HTIERNSFVG-------LSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEEL 193
Query: 201 IPYA-GHLYQLQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSAELPTNVFHNLPF 258
LD+S ++ SLPS+ + L+ + + +LPT L
Sbjct: 194 PNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK---KLPT--LEKLVA 247
Query: 259 LEELYLSNN 267
L E L+
Sbjct: 248 LMEASLTYP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 81.8 bits (202), Expect = 4e-17
Identities = 46/214 (21%), Positives = 79/214 (36%), Gaps = 35/214 (16%)
Query: 333 LDLSDNQLSGSLPSFKFNMPL-LQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYG 391
+++++ +PS ++P L +L + F LE++ +S N
Sbjct: 14 FLCQESKVT-EIPS---DLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLE 68
Query: 392 EIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQ-YNRLQGTIPYA-GHLFQ 449
I +D SNL KL ++ ++ N L P A +L
Sbjct: 69 VIEADV-----------------------FSNLPKLHEIRIEKANNLLYINPEAFQNLPN 105
Query: 450 LQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSTELPTNVFHNLPF-LEELYLSNN 507
LQ+L +S+ + LP LD+ N + N F L F L+L+ N
Sbjct: 106 LQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164
Query: 508 MFYGEIPSDTPNCSYLRILVVQFNNFSGAIPKEI 541
EI + N + L L + NN +P ++
Sbjct: 165 GIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDV 197
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 7e-25
Identities = 61/354 (17%), Positives = 107/354 (30%), Gaps = 58/354 (16%)
Query: 163 LRILVLQFNNFSGAIPKEI----SNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDN 218
+ F N + K N+ + + Q L L+
Sbjct: 11 FSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLK-ECLINQFSELQLNRL 69
Query: 219 QLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTA 278
LS SLP P + L+++ N L LP LE L +N +P A
Sbjct: 70 NLS-SLPDNLP--PQITVLEITQNALI-SLPEL----PASLEYLDACDNRL-STLPELPA 120
Query: 279 NCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQ-LQWLDLSD 337
+ +L + N + +P+ + L E ++ N+L + L L+ L + +
Sbjct: 121 SLKHLD---VDNNQLT-MLPELPALL---EYINADNNQLT----MLPELPTSLEVLSVRN 169
Query: 338 NQLSGSLPSFKFNMPLLQFLDLSSNRLSV--ELPTNVFHNLPFLEELYLSNNMFYGEIPS 395
NQL+ LP L+ LD+S+N L +P H+ N
Sbjct: 170 NQLT-FLPEL---PESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCREN-------- 217
Query: 396 DTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDL 455
RI + P+ I +L + L+ N L I + Q
Sbjct: 218 --------RITHI---------PENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYH 260
Query: 456 SDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMF 509
+ + +++ ++V E +N
Sbjct: 261 GPRIYFSMSDGQQNTLHRPLADAVTAW-FPENKQSDVSQIWHAFEHEEHANTFS 313
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 99.3 bits (247), Expect = 4e-22
Identities = 62/310 (20%), Positives = 107/310 (34%), Gaps = 37/310 (11%)
Query: 60 SIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKR 119
SI I N SL +F N ++ + E L + S L C
Sbjct: 2 SIMLPINNNFSLSQNSFYNTIS--GTYADYFSAWDKWEKQAL-PGENRNEAVSLLKECLI 58
Query: 120 LRETSLSLND----FFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSG 175
+ + L LN D+ L +++N +P A+ L L N S
Sbjct: 59 NQFSELQLNRLNLSSLPDNLPPQITVLEITQNAL-ISLPELPAS---LEYLDACDNRLS- 113
Query: 176 AIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQ 235
+P+ ++L L D+ N+L +P L++++ +NQL+ LP L+
Sbjct: 114 TLPELPASLKHL---DVDNNQLT-MLP--ELPALLEYINADNNQLT-MLPE---LPTSLE 163
Query: 236 FLDLSSNRLSA--ELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLR----ILVLR 289
L + +N+L+ ELP + LE L +S N+ +P+ + R
Sbjct: 164 VLSVRNNQLTFLPELPES-------LEALDVSTNLL-ESLPAVPVRNHHSEETEIFFRCR 215
Query: 290 FNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKF 349
N + IP+ I +L + L+ N L I Q +
Sbjct: 216 ENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQN 274
Query: 350 NMPLLQFLDL 359
+ +
Sbjct: 275 TLHRPLADAV 284
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 91.6 bits (227), Expect = 1e-19
Identities = 49/327 (14%), Positives = 101/327 (30%), Gaps = 32/327 (9%)
Query: 26 LNISGLNLT--VTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFG 83
+ G N V++ E ++ L L+ S S+P ++ + + NAL
Sbjct: 39 QALPGENRNEAVSLLKE-CLINQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNAL-I 93
Query: 84 ELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFW-DHTKRNWQQL 142
LP ++LE L N +P +S K L + N + +
Sbjct: 94 SLPEL----PASLEYLDACDNRLS-TLPELPASLKHLD---VDNNQLTMLPELPALLEYI 145
Query: 143 YLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIP 202
N +P + L +L ++ N + +P+ + LE LD+ N L+
Sbjct: 146 NADNNQL-TMLPELPTS---LEVLSVRNNQLT-FLPELPES---LEALDVSTNLLESLPA 197
Query: 203 YAGHLYQLQ----WLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPF 258
+ + + +N+++ +P + + L N LS
Sbjct: 198 VPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS-SRIRESLSQQTA 255
Query: 259 LEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQ 318
+ + F L V F ++S + + + N
Sbjct: 256 QPDYHGPRIYFSMSDGQQNTLHRPLADAVT--AWFPENKQSDVSQIWHAFEHEEHANTFS 313
Query: 319 GTILYVGHLLQLQWLDLSDNQLSGSLP 345
+ + + + Q++ L
Sbjct: 314 AFLDRLSDTVSARNTSGFREQVAAWLE 340
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 1e-04
Identities = 29/206 (14%), Positives = 57/206 (27%), Gaps = 32/206 (15%)
Query: 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFI----NN 79
L++ LT +P +L + LD+S N S+PA N
Sbjct: 163 EVLSVRNNQLT-FLPELPESL---EALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCREN 217
Query: 80 ALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNW 139
+ +P N + L ++ L+ N +I +LS + F ++N
Sbjct: 218 RI-THIPENILS-LDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNT 275
Query: 140 QQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQG 199
L+ F ++S + + + N
Sbjct: 276 LHRPLADA---------------------VTAWFPENKQSDVSQIWHAFEHEEHANTFSA 314
Query: 200 TIPYAGHLYQLQWLDLSDNQLSGSLP 225
+ + Q++ L
Sbjct: 315 FLDRLSDTVSARNTSGFREQVAAWLE 340
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 2e-24
Identities = 38/187 (20%), Positives = 74/187 (39%), Gaps = 13/187 (6%)
Query: 330 LQWLDLSDNQLSGSLPSFKF-NMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNM 388
Q L L + L ++PS F N+P + + +S + +L ++ F+NL + + + N
Sbjct: 33 TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91
Query: 389 FYGEIPSDT-QNCSYLRILVLKFNN---FPGAIPKEISNLTKLEKLDLQYNRLQGTIPY- 443
I D + L+ L + FP ++ + L++ N +IP
Sbjct: 92 NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLT--KVYSTDIFFILEITDNPYMTSIPVN 149
Query: 444 --AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLP-FLE 500
G + L L +N + S+ + F L + L+ N+ T + + F +
Sbjct: 150 AFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS 208
Query: 501 ELYLSNN 507
L +S
Sbjct: 209 LLDVSQT 215
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 6e-24
Identities = 38/206 (18%), Positives = 76/206 (36%), Gaps = 13/206 (6%)
Query: 210 LQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNM 268
Q L L + L ++PS F +P + + +S + +L ++ F+NL + + + N
Sbjct: 33 TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91
Query: 269 FYGEIPSDT-ANCSYLRILVLRFNNFSGAIPKE--ISNLTKLEKLDLQYNRLQGTI---L 322
I D L+ L + P + + L++ N +I
Sbjct: 92 NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150
Query: 323 YVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLP-FLEE 381
+ G + L L +N + S+ + FN L + L+ N+ + + F +
Sbjct: 151 FQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209
Query: 382 LYLSNNMFYGEIPSDT-QNCSYLRIL 406
L +S +PS ++ L
Sbjct: 210 LDVSQTSV-TALPSKGLEHLKELIAR 234
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 8e-24
Identities = 44/236 (18%), Positives = 79/236 (33%), Gaps = 16/236 (6%)
Query: 160 CSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA--GHLYQLQWLDLSD 217
C + + IP S + L L L+ TIP +L + + +S
Sbjct: 10 CHQEEDFRVTCKDIQ-RIP---SLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSI 64
Query: 218 NQLSGSLPSFKFK-MPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSD 276
+ L S F + + +++ + R + + LP L+ L + N P
Sbjct: 65 DVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPDL 123
Query: 277 TA--NCSYLRILVLRFNNFSGAIPKEI-SNLTK-LEKLDLQYNRLQGTILYVGHLLQLQW 332
T + IL + N + +IP L L L N Y + +L
Sbjct: 124 TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDA 183
Query: 333 LDLSDNQLSGSLP--SFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSN 386
+ L+ N+ + +F LD+S ++ LP+ +L L
Sbjct: 184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNTWT 238
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 5e-23
Identities = 44/237 (18%), Positives = 77/237 (32%), Gaps = 18/237 (7%)
Query: 280 CSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVG---HLLQLQWLDLS 336
C + + IP S + L L L + +L + + +S
Sbjct: 10 CHQEEDFRVTCKDIQ-RIP---SLPPSTQTLKLIETHL--RTIPSHAFSNLPNISRIYVS 63
Query: 337 DNQLSGSLPSFKF-NMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPS 395
+ L S F N+ + +++ + R + + LP L+ L + N P
Sbjct: 64 IDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPD 122
Query: 396 DT--QNCSYLRILVLKFNNFPGAIPKEI-SNLTK-LEKLDLQYNRLQGTIPYAGHLFQLQ 451
T + IL + N + +IP L L L N YA + +L
Sbjct: 123 LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLD 182
Query: 452 WLDLSDNQLSGSLPSFKFK--MPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSN 506
+ L+ N+ + F LD+S + T LP+ +L L
Sbjct: 183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV-TALPSKGLEHLKELIARNTWT 238
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 3e-15
Identities = 43/251 (17%), Positives = 78/251 (31%), Gaps = 34/251 (13%)
Query: 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIF-NMSSLLSINFINNALF 82
++ ++ IPS S QTL L +IP+ F N+ ++ I +
Sbjct: 14 EDFRVTCKDIQ-RIPS---LPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTL 68
Query: 83 GELPPNFCNHLSNLESLFLKSNMFHGKIPS-TLSSCKRLRETSLSLNDFFWDHTKRNWQQ 141
+L + +LS + + +++ I L L+
Sbjct: 69 QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF------------------- 109
Query: 142 LYLSKNMFYGEIPSDIA--NCSYLRILVLQFNNFSGAIPKEI-SNLTK-LEKLDLQYNKL 197
L + P + IL + N + +IP L L L N
Sbjct: 110 LGIFNTGL-KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168
Query: 198 QGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFK--MPLLQFLDLSSNRLSAELPTNVFHN 255
YA + +L + L+ N+ + F LD+S ++ LP+ +
Sbjct: 169 TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEH 227
Query: 256 LPFLEELYLSN 266
L L
Sbjct: 228 LKELIARNTWT 238
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 1e-08
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Query: 450 LQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNM 508
Q L L + L ++PS F +P + + +S + +L ++ F+NL + + + N
Sbjct: 33 TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91
Query: 509 FYGEIPSDT-PNCSYLRILVVQFNNFS 534
I D L+ L +
Sbjct: 92 NLTYIDPDALKELPLLKFLGIFNTGLK 118
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 99.2 bits (247), Expect = 4e-23
Identities = 60/282 (21%), Positives = 94/282 (33%), Gaps = 29/282 (10%)
Query: 247 ELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEIS---N 303
EL L+ + ++ +D L+ L +R I
Sbjct: 37 ELYGGGRSLEYLLKRVDTEADLG---QFTDIIKSLSLKRLTVRAARIPSRILFGALRVLG 93
Query: 304 LTKLEKLDLQYNRLQGTI---LYVGHLLQLQWLDLSDNQLSGSLPS----FKFNMPLLQF 356
++ L++L L+ + GT L L L+L + + ++ P L+
Sbjct: 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153
Query: 357 LDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNC----SYLRILVLKFNN 412
L ++ P L L LS+N GE + C L++L L+
Sbjct: 154 LSIAQAHSLN-FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212
Query: 413 F---PGAIPKEISNLTKLEKLDLQYNRLQGTIPYAG--HLFQLQWLDLSDNQLSGSLPSF 467
G + +L+ LDL +N L+ QL L+LS L +P
Sbjct: 213 METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG 271
Query: 468 KFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMF 509
L LDLS NRL LP + L L N F
Sbjct: 272 LP--AKLSVLDLSYNRLDR---NPSPDELPQVGNLSLKGNPF 308
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 98.0 bits (244), Expect = 8e-23
Identities = 60/300 (20%), Positives = 88/300 (29%), Gaps = 46/300 (15%)
Query: 182 SNLTKLEKLDLQYNKLQGTIPYAGHL--YQLQWLDLSDNQLSGSLPSFKFK---MPLLQF 236
LE L + + + + L+ L + ++ + + + LQ
Sbjct: 40 GGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQE 99
Query: 237 LDLSSNRLSAELPTNVF-HNLPFLEELYLSNNMFYGEIPSDTANCSY----LRILVLRFN 291
L L + ++ P + P L L L N + + L++L +
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159
Query: 292 NFSGAIPKEISNLTKLEKLDLQYNRLQGTI-----LYVGHLLQLQWLDLSDNQ---LSGS 343
+ +++ L LDL N G L LQ L L + SG
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219
Query: 344 LPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYL 403
+ LQ LDLS N L L L LS
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT---------------- 263
Query: 404 RILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGS 463
P +P KL LDL YNRL P L Q+ L L N S
Sbjct: 264 -----GLKQVPKGLP------AKLSVLDLSYNRLD-RNPSPDELPQVGNLSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 84.9 bits (210), Expect = 2e-18
Identities = 47/252 (18%), Positives = 79/252 (31%), Gaps = 21/252 (8%)
Query: 302 SNLTKLEKLDLQYNRLQGTILYVGHL--LQLQWLDLSDNQLSGSLPS---FKFNMPLLQF 356
LE L + + + + L L+ L + ++ + + LQ
Sbjct: 40 GGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQE 99
Query: 357 LDLSSNRLSVELPTNVF-HNLPFLEELYLSNNMFYGEIPSDTQNCSY----LRILVLKFN 411
L L + ++ P + P L L L N + + + L++L +
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159
Query: 412 NFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA-----GHLFQLQWLDLSDNQ---LSGS 463
+ +++ L LDL N G LQ L L + SG
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219
Query: 464 LPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYL 523
+ LQ LDLS N L L L LS ++P P + L
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKL 276
Query: 524 RILVVQFNNFSG 535
+L + +N
Sbjct: 277 SVLDLSYNRLDR 288
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 82.6 bits (204), Expect = 1e-17
Identities = 53/276 (19%), Positives = 85/276 (30%), Gaps = 25/276 (9%)
Query: 1 NWNTSSSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGS 60
+T + + +T I + R+T + + + +S LQ L L +G+
Sbjct: 51 RVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGT 110
Query: 61 IPASIFNMSSL----LSINFINNALFGELPPNFCNHLS-NLESLFLKSNMFHGKIPSTLS 115
P + + L++ ++ A L L+ L + +
Sbjct: 111 APPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170
Query: 116 SCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSG 175
L LS N + + P L + SG
Sbjct: 171 VFPALSTLDLSDN------------PELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218
Query: 176 AIPKEISNLTKLEKLDLQYNKLQGTIPYAG--HLYQLQWLDLSDNQLSGSLPSFKFKMPL 233
+ +L+ LDL +N L+ QL L+LS L +P
Sbjct: 219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AK 275
Query: 234 LQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMF 269
L LDLS NRL P LP + L L N F
Sbjct: 276 LSVLDLSYNRLD-RNP--SPDELPQVGNLSLKGNPF 308
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 99.5 bits (248), Expect = 6e-23
Identities = 63/222 (28%), Positives = 93/222 (41%), Gaps = 52/222 (23%)
Query: 275 SDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVG----HLLQL 330
S+ +CS ++ +P+ + + T LDL +N L + L L L
Sbjct: 20 SNILSCSKQQLP---------NVPQSLPSYT--ALLDLSHNNL--SRLRAEWTPTRLTNL 66
Query: 331 QWLDLSDNQLSGSLPSFKF-NMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMF 389
L LS N L+ + S F +P L++LDLSSN L L +F +L LE L L NN
Sbjct: 67 HSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHT-LDEFLFSDLQALEVLLLYNN-- 122
Query: 390 YGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQ----GTIPYAG 445
I+V+ N F ++ +L+KL L N++ I
Sbjct: 123 --------------HIVVVDRNAF--------EDMAQLQKLYLSQNQISRFPVELIKDGN 160
Query: 446 HLFQLQWLDLSDNQLSGSLPSFKFK-MPLL--QFLDLSSNRL 484
L +L LDLS N+L LP + +P L L +N L
Sbjct: 161 KLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPL 201
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 96.8 bits (241), Expect = 5e-22
Identities = 56/186 (30%), Positives = 71/186 (38%), Gaps = 35/186 (18%)
Query: 210 LQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNM 268
LDLS N LS + ++ L L LS N L+ + + F +P L L LS+N
Sbjct: 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSNH 99
Query: 269 FYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYV-GHL 327
+ FS L LE L L N + +
Sbjct: 100 L-HTLDEFL---------------FSD--------LQALEVLLLYNNHIVVVDRNAFEDM 135
Query: 328 LQLQWLDLSDNQLSGSLPSFKF----NMPLLQFLDLSSNRLSVELPTNVFHNLPFL--EE 381
QLQ L LS NQ+S P +P L LDLSSN+L +LP LP
Sbjct: 136 AQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNG 193
Query: 382 LYLSNN 387
LYL NN
Sbjct: 194 LYLHNN 199
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 92.6 bits (230), Expect = 1e-20
Identities = 52/209 (24%), Positives = 73/209 (34%), Gaps = 38/209 (18%)
Query: 331 QWLDLSDNQLSGSLPSFKFNMP-LLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMF 389
L S QL ++P ++P LDLS N LS L L L LS+N
Sbjct: 21 NILSCSKQQLP-NVPQ---SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL 76
Query: 390 YGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA--GHL 447
I S+ F + L LDL N L T+ L
Sbjct: 77 -NFISSEA---------------F--------VPVPNLRYLDLSSNHLH-TLDEFLFSDL 111
Query: 448 FQLQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSTELPTNVFHN---LPFLEELY 503
L+ L L +N + + F M LQ L LS N++ + P + + LP L L
Sbjct: 112 QALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLD 169
Query: 504 LSNNMFYGEIPSDTPNCSYLRILVVQFNN 532
LS+N +D + +N
Sbjct: 170 LSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 80.7 bits (199), Expect = 1e-16
Identities = 42/162 (25%), Positives = 62/162 (38%), Gaps = 14/162 (8%)
Query: 140 QQLYLSKNMFYGEIPSDIA--NCSYLRILVLQFNNFSGAIPKEI-SNLTKLEKLDLQYNK 196
L LS N + ++ + L L+L N+ + I E + L LDL N
Sbjct: 42 ALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNH 99
Query: 197 LQGTIPYA--GHLYQLQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSAELPTNVF 253
L T+ L L+ L L +N + + F M LQ L LS N++S P +
Sbjct: 100 LH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELI 156
Query: 254 HN---LPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNN 292
+ LP L L LS+N +D L +N
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 7e-12
Identities = 65/247 (26%), Positives = 77/247 (31%), Gaps = 81/247 (32%)
Query: 29 SGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPN 88
S L +P L S LDLS N +L +
Sbjct: 26 SKQQLP-NVPQSL--PSYTALLDLSHN--------------NLSRLR----------AEW 58
Query: 89 FCNHLSNLESLFLKSNMFHGKIPS-TLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKN 147
L+NL SL L N + I S LR L LS N
Sbjct: 59 TPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRY-------------------LDLSSN 98
Query: 148 MFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA-GH 206
+ L FS L LE L L N + A
Sbjct: 99 ----------------HLHTLDEFLFSD--------LQALEVLLLYNNHIVVVDRNAFED 134
Query: 207 LYQLQWLDLSDNQLSGSLPSFKF----KMPLLQFLDLSSNRLSAELPTNVFHNLPFL--E 260
+ QLQ L LS NQ+S P K+P L LDLSSN+L +LP LP
Sbjct: 135 MAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKN 192
Query: 261 ELYLSNN 267
LYL NN
Sbjct: 193 GLYLHNN 199
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 4e-05
Identities = 50/231 (21%), Positives = 73/231 (31%), Gaps = 79/231 (34%)
Query: 23 VTALNISGLNLTVTIPSE--LGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNA 80
L++S NL+ + +E L++L +L LS N + I + F
Sbjct: 41 TALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAF-------------- 84
Query: 81 LFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQ 140
+ NL L L SN H S + L
Sbjct: 85 ----------VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV------------------ 116
Query: 141 QLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQ-- 198
L L N I+V+ N F ++ L K L L N++
Sbjct: 117 -LLLYNN----------------HIVVVDRNAFED-----MAQLQK---LYLSQNQISRF 151
Query: 199 --GTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFK-MPLL--QFLDLSSNRL 244
I L +L LDLS N+L LP + +P L L +N L
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPL 201
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 97.5 bits (243), Expect = 1e-22
Identities = 50/230 (21%), Positives = 93/230 (40%), Gaps = 18/230 (7%)
Query: 278 ANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSD 337
+ + +N + + ++L + L + TI V +L L L+L D
Sbjct: 16 PALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKD 72
Query: 338 NQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDT 397
NQ++ L K N+ + L+LS N L + L ++ L L++ +
Sbjct: 73 NQIT-DLAPLK-NLTKITELELSGNPLKN---VSAIAGLQSIKTLDLTSTQITD--VTPL 125
Query: 398 QNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSD 457
S L++L L N P ++ LT L+ L + ++ + +L +L L D
Sbjct: 126 AGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-DLTPLANLSKLTTLKADD 182
Query: 458 NQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
N++S + +P L + L +N++S P N L + L+N
Sbjct: 183 NKIS-DISPLA-SLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTNQ 227
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 3e-22
Identities = 54/342 (15%), Positives = 113/342 (33%), Gaps = 73/342 (21%)
Query: 181 ISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLS 240
L K+ + + T+ A L + L ++ ++ + + L L+L
Sbjct: 15 DPALANAIKIAAGKSNVTDTVTQAD-LDGITTLSAFGTGVT-TIEGVQ-YLNNLIGLELK 71
Query: 241 SNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKE 300
N+++ P NL + EL LS N N S
Sbjct: 72 DNQITDLAP---LKNLTKITELELSGN---------------------PLKNVSA----- 102
Query: 301 ISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLS 360
I+ L ++ LDL ++ + + L LQ L L NQ++ ++ + LQ+L +
Sbjct: 103 IAGLQSIKTLDLTSTQIT-DVTPLAGLSNLQVLYLDLNQIT-NISPLA-GLTNLQYLSIG 159
Query: 361 SNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKE 420
+ ++S P NL L L +N K ++
Sbjct: 160 NAQVSDLTP---LANLSKLTTLKADDN---------------------KISDISP----- 190
Query: 421 ISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLS 480
+++L L ++ L+ N++ + + L + L++ ++ + + + +
Sbjct: 191 LASLPNLIEVHLKNNQIS-DVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGP 249
Query: 481 SNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSY 522
S + ++ + S N SY
Sbjct: 250 SGAPIA--------PATISDNGTYASPNLTWNLTSFINNVSY 283
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 3e-17
Identities = 44/227 (19%), Positives = 88/227 (38%), Gaps = 15/227 (6%)
Query: 138 NWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKL 197
L + + L L L+ N + P + NLTK+ +L+L N L
Sbjct: 42 GITTLSAFGTGV--TTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL 97
Query: 198 QGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLP 257
+ + L ++ LDL+ Q++ + + LQ L L N+++ + L
Sbjct: 98 K-NVSAIAGLQSIKTLDLTSTQIT-DVTPLA-GLSNLQVLYLDLNQITN---ISPLAGLT 151
Query: 258 FLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRL 317
L+ L + N + AN S L L N S P +++L L ++ L+ N++
Sbjct: 152 NLQYLSIGNAQV--SDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQI 207
Query: 318 QGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRL 364
+ + + L + L++ ++ + N+ + + S
Sbjct: 208 S-DVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 3e-15
Identities = 54/288 (18%), Positives = 107/288 (37%), Gaps = 42/288 (14%)
Query: 35 VTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLS 94
VT +L + TL + +I + +++L+ + +N + +L P +L+
Sbjct: 31 VTDTVTQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQI-TDLAP--LKNLT 85
Query: 95 NLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIP 154
+ L L N K S ++ + ++ L L+
Sbjct: 86 KITELELSGNPL--KNVSAIAGLQSIKT-------------------LDLTSTQITD--V 122
Query: 155 SDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLD 214
+ +A S L++L L N + P ++ LT L+ L + ++ + +L +L L
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-DLTPLANLSKLTTLK 179
Query: 215 LSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIP 274
DN++S + +P L + L +N++S P N L + L+N I
Sbjct: 180 ADDNKIS-DISPLA-SLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTNQ----TIT 230
Query: 275 SDTANCSYLRILVLRFNNFSGAI--PKEISNLTKLEKLDLQYNRLQGT 320
+ + ++ SGA P IS+ +L +N
Sbjct: 231 NQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFI 278
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 94.6 bits (236), Expect = 7e-21
Identities = 72/414 (17%), Positives = 133/414 (32%), Gaps = 79/414 (19%)
Query: 163 LRILVLQFNNFS-GAIPKEISNLTKLEKLDLQYNKL--QGTIPYAGHLYQ---LQWLDLS 216
++ L +Q S + + L + + + L L + L L L+L
Sbjct: 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64
Query: 217 DNQLSGS-----LPSFKFKMPLLQFLDLSSNRLS---AELPTNVFHNLPFLEELYLSNNM 268
N+L L + +Q L L + L+ + ++ LP L+EL+LS+N+
Sbjct: 65 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124
Query: 269 FYGEIPSDTA----------NCSYLRILVLRFNNFS----GAIPKEISNLTKLEKLDLQY 314
D L L L + + S + + ++L +
Sbjct: 125 L-----GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179
Query: 315 NRLQGT-ILYVGHLLQ-----LQWLDLSDNQLS----GSLPSFKFNMPLLQFLDLSSNRL 364
N + + + L+ L+ L L ++ L + L+ L L SN+L
Sbjct: 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239
Query: 365 SVE----LPTNVFHNLPFLEELYLSNNMFYGE----IPSDTQNCSYLRILVLKFNNFPGA 416
L + H L L++ + + + L+ L L N
Sbjct: 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299
Query: 417 IPKEISNL-----TKLEKLDLQYNRL--QGTIPYA---GHLFQLQWLDLSDNQLSGS--- 463
+ + +LE L ++ ++ L L +S+N+L +
Sbjct: 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359
Query: 464 --LPSFKFKMPLLQFLDLSSNRLSTE--------LPTNVFHNLPFLEELYLSNN 507
+L+ L L+ +S L N L EL LSNN
Sbjct: 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN-----HSLRELDLSNN 408
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 1e-19
Identities = 72/371 (19%), Positives = 125/371 (33%), Gaps = 70/371 (18%)
Query: 185 TKLEKLDLQYNKL--QGTIPYAGHLYQLQWLDLSDNQLS----GSLPSFKFKMPLLQFLD 238
++ LD+Q +L L Q Q + L D L+ + S P L L+
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 239 LSSNRLSAE----LPTNVFHNLPFLEELYLSNNMF----YGEIPSDTANCSYLRILVLRF 290
L SN L + + +++L L N G + S L+ L L
Sbjct: 63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122
Query: 291 NNFSGAIPKEIS-----NLTKLEKLDLQYNRLQGT-ILYVGHLLQ----LQWLDLSDNQL 340
N A + + +LEKL L+Y L + +L+ + L +S+N +
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182
Query: 341 SGS-----LPSFKFNMPLLQFLDLSSNRLS---VELPTNVFHNLPFLEELYLSNNMFYGE 392
+ + K + L+ L L S ++ + + L EL L +N
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242
Query: 393 IPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQ--- 449
+ L +L + ++L L + + T G L +
Sbjct: 243 ------GMAELCPGLLHPS-------------SRLRTLWIWECGI--TAKGCGDLCRVLR 281
Query: 450 ----LQWLDLSDNQLSGS-----LPSFKFKMPLLQFLDLSSNRLSTE----LPTNVFHNL 496
L+ L L+ N+L + L+ L + S + ++V
Sbjct: 282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF-SSVLAQN 340
Query: 497 PFLEELYLSNN 507
FL EL +SNN
Sbjct: 341 RFLLELQISNN 351
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 89.6 bits (223), Expect = 2e-19
Identities = 88/416 (21%), Positives = 133/416 (31%), Gaps = 72/416 (17%)
Query: 140 QQLYLSKNMFYGEIPSDIA----NCSYLRILVLQFNNFSGAIPKEI-----SNLTKLEKL 190
Q + L DI+ L L L+ N + + K++KL
Sbjct: 31 QVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKL 90
Query: 191 DLQYNKLQGTIPYAGHL-------YQLQWLDLSDNQLSGS-----LPSFKFKMPLLQFLD 238
LQ L T G L LQ L LSDN L + L+ L
Sbjct: 91 SLQNCCL--TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ 148
Query: 239 LSSNRLSAELPT---NVFHNLPFLEELYLSNNMFYGE-----IPSDTANCSYLRILVLRF 290
L LSA +V P +EL +SNN + L L L
Sbjct: 149 LEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES 208
Query: 291 NNFS----GAIPKEISNLTKLEKLDLQYNRLQGT---ILYVGHL---LQLQWLDLSDNQL 340
+ + +++ L +L L N+L L G L +L+ L + + +
Sbjct: 209 CGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI 268
Query: 341 S----GSLPSFKFNMPLLQFLDLSSNRLSVE----LPTNVFHNLPFLEELYLSNNMF--- 389
+ G L L+ L L+ N L E L + LE L++ + F
Sbjct: 269 TAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA 328
Query: 390 -YGEIPSDTQNCSYLRILVLKFNNFPGAIPKEIS-----NLTKLEKLDLQYNRLQGTIPY 443
S +L L + N A +E+ + L L L + +
Sbjct: 329 CCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV--SDSS 386
Query: 444 AGHL-------FQLQWLDLSDNQLSGS-----LPSFKFKMPLLQFLDLSSNRLSTE 487
L L+ LDLS+N L + + S + LL+ L L S E
Sbjct: 387 CSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 442
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 84.2 bits (209), Expect = 2e-17
Identities = 81/463 (17%), Positives = 133/463 (28%), Gaps = 96/463 (20%)
Query: 45 SSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSN 104
+Q+LD+ S + A + L + + L
Sbjct: 3 LDIQSLDIQCEELSDARWAEL------------------------LPLLQQCQVVRLDDC 38
Query: 105 MFHGK----IPSTLSSCKRLRETSLSLNDF----------FWDHTKRNWQQLYLSKNMF- 149
I S L L E +L N+ Q+L L
Sbjct: 39 GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 98
Query: 150 ---YGEIPSDIANCSYLRILVLQFNNFSGAIPKEIS-----NLTKLEKLDLQYNKLQGTI 201
G + S + L+ L L N A + + +LEKL L+Y L +
Sbjct: 99 GAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL--SA 156
Query: 202 PYAGHL-------YQLQWLDLSDNQLSGS-----LPSFKFKMPLLQFLDLSSNRLS---A 246
L + L +S+N ++ + K L+ L L S ++
Sbjct: 157 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 216
Query: 247 ELPTNVFHNLPFLEELYLSNNMFYGE-----IPSDTANCSYLRILVLRFNNFS----GAI 297
+ + L EL L +N P S LR L + + G +
Sbjct: 217 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL 276
Query: 298 PKEISNLTKLEKLDLQYNRLQGT-ILYVGHLL-----QLQWLDLSDNQLSG----SLPSF 347
+ + L++L L N L + L QL+ L + + S
Sbjct: 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV 336
Query: 348 KFNMPLLQFLDLSSNRLSVE----LPTNVFHNLPFLEELYLSNNMF----YGEIPSDTQN 399
L L +S+NRL L + L L+L++ + +
Sbjct: 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 396
Query: 400 CSYLRILVLKFNNFPGAIPKEIS-----NLTKLEKLDLQYNRL 437
LR L L N A ++ LE+L L
Sbjct: 397 NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 3e-17
Identities = 72/419 (17%), Positives = 123/419 (29%), Gaps = 92/419 (21%)
Query: 22 RVTALNISGLNLTVT----IPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFI 77
+ + + LT I S L +L L+L N + L + +
Sbjct: 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG--LQTPS-- 84
Query: 78 NNALFGELPPNFCNHLSNLESLFLKSNMFHGK----IPSTLSSCKRLRETSLSLNDFFWD 133
++ L L++ G + STL + L+E LS N
Sbjct: 85 ----------------CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL--- 125
Query: 134 HTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFS----GAIPKEISNLTKLEK 189
Q L + L L L++ + S + + ++
Sbjct: 126 -GDAGLQLLCEGL----------LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKE 174
Query: 190 LDLQYNKL--QGTIPYAGHL----YQLQWLDLSDNQLS----GSLPSFKFKMPLLQFLDL 239
L + N + G L QL+ L L ++ L L+ L L
Sbjct: 175 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234
Query: 240 SSNRLSAE----LPTNVFHNLPFLEELYLSNNMFYGE----IPSDTANCSYLRILVLRFN 291
SN+L L + H L L++ + + L+ L L N
Sbjct: 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294
Query: 292 NFSGAIPKEISNL-----TKLEKLDLQYNRLQGT-ILYVGHLLQ----LQWLDLSDNQLS 341
+ + +LE L ++ + +L L L +S+N+L
Sbjct: 295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354
Query: 342 GS-----LPSFKFNMPLLQFLDLSSNRLSVE--------LPTNVFHNLPFLEELYLSNN 387
+ +L+ L L+ +S L N L EL LSNN
Sbjct: 355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN-----HSLRELDLSNN 408
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 7e-21
Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 40/216 (18%)
Query: 296 AIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQ 355
P + + K +L+ + + L + + +++ + S+ + +P ++
Sbjct: 12 IFPDDAF--AETIKANLKKKSVT-DAVTQNELNSIDQIIANNSDIK-SVQGIQ-YLPNVR 66
Query: 356 FLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPG 415
+L L N+L ++ L L L L+ N + + P
Sbjct: 67 YLALGGNKLH-DIS--ALKELTNLTYLILTGN---------------------QLQSLPN 102
Query: 416 AIPKEISNLTKLEKLDLQYNRLQGTIPYAG---HLFQLQWLDLSDNQLSGSLPSFKF-KM 471
+ LT L++L L N+LQ ++P G L L +L+L+ NQL SLP F K+
Sbjct: 103 GVFD---KLTNLKELVLVENQLQ-SLP-DGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKL 156
Query: 472 PLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
L LDLS N+L LP VF L L++L L N
Sbjct: 157 TNLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLYQN 191
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 1e-20
Identities = 53/217 (24%), Positives = 86/217 (39%), Gaps = 42/217 (19%)
Query: 176 AIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQ 235
P + + K +L+ + L + + +++ + S+ + +P ++
Sbjct: 12 IFPDDAF--AETIKANLKKKSVT-DAVTQNELNSIDQIIANNSDIK-SVQGIQ-YLPNVR 66
Query: 236 FLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSG 295
+L L N+L + L L L L+ N
Sbjct: 67 YLALGGNKLHD-IS--ALKELTNLTYLILTGNQL-------------------------Q 98
Query: 296 AIPKEI-SNLTKLEKLDLQYNRLQGTILYVG---HLLQLQWLDLSDNQLSGSLPSFKF-N 350
++P + LT L++L L N+LQ L G L L +L+L+ NQL SLP F
Sbjct: 99 SLPNGVFDKLTNLKELVLVENQLQS--LPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDK 155
Query: 351 MPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNN 387
+ L LDLS N+L LP VF L L++L L N
Sbjct: 156 LTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQN 191
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 7e-18
Identities = 58/215 (26%), Positives = 96/215 (44%), Gaps = 17/215 (7%)
Query: 153 IPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQW 212
P D L+ + + A+ + L ++++ + ++ ++ +L +++
Sbjct: 13 FPDDAF-AE-TIKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SVQGIQYLPNVRY 67
Query: 213 LDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGE 272
L L N+L + + K ++ L +L L+ N+L + LP VF L L+EL L N
Sbjct: 68 LALGGNKLH-DISALK-ELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQL-QS 123
Query: 273 IPSDTANC-SYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVG---HLL 328
+P + + L L L N LT L +LDL YN+LQ L G L
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS--LPEGVFDKLT 181
Query: 329 QLQWLDLSDNQLSGSLPSFKF-NMPLLQFLDLSSN 362
QL+ L L NQL S+P F + LQ++ L N
Sbjct: 182 QLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 215
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 4e-20
Identities = 29/184 (15%), Positives = 68/184 (36%), Gaps = 9/184 (4%)
Query: 182 SNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSS 241
S L + + L ++ L++ ++ L + ++ L +++
Sbjct: 20 STFKAYLNGLLGQSST--ANITEAQMNSLTYITLANINVT-DLTGIE-YAHNIKDLTINN 75
Query: 242 NRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEI 301
+ N L LE L + + + + + L +L + + +I +I
Sbjct: 76 IHATN---YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132
Query: 302 SNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSS 361
+ L K+ +DL YN I+ + L +L+ L++ + + + + P L L S
Sbjct: 133 NTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVH-DYRGIE-DFPKLNQLYAFS 190
Query: 362 NRLS 365
+
Sbjct: 191 QTIG 194
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 2e-19
Identities = 29/186 (15%), Positives = 66/186 (35%), Gaps = 9/186 (4%)
Query: 302 SNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSS 361
S L + + + L ++ L++ ++ L + ++ L +++
Sbjct: 20 STFKAYLNGLLGQS--STANITEAQMNSLTYITLANINVT-DLTGIE-YAHNIKDLTINN 75
Query: 362 NRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEI 421
+ N L LE L + + + + L +L + + +I +I
Sbjct: 76 IHATN---YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132
Query: 422 SNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSS 481
+ L K+ +DL YN I L +L+ L++ + + + P L L S
Sbjct: 133 NTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVH-DYRGIE-DFPKLNQLYAFS 190
Query: 482 NRLSTE 487
+ +
Sbjct: 191 QTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 3e-19
Identities = 23/182 (12%), Positives = 64/182 (35%), Gaps = 6/182 (3%)
Query: 161 SYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQL 220
S + + S + + L + L + + + + ++ L +++
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT-DLTGIEYAHNIKDLTINNIHA 78
Query: 221 SGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANC 280
+ + + L+ L + ++++ N L L L +S++ I +
Sbjct: 79 T-NYNPIS-GLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHSAHDDSILTKINTL 135
Query: 281 SYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQL 340
+ + L +N I + L +L+ L++Q++ + + +L L +
Sbjct: 136 PKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVH-DYRGIEDFPKLNQLYAFSQTI 193
Query: 341 SG 342
G
Sbjct: 194 GG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 6e-16
Identities = 30/183 (16%), Positives = 62/183 (33%), Gaps = 10/183 (5%)
Query: 137 RNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNK 196
+ + L ++ + + + L + L N + I ++ L +
Sbjct: 23 KAYLNGLLGQSSTANITEAQMNS---LTYITLANINVTDL--TGIEYAHNIKDLTINNIH 77
Query: 197 LQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNL 256
P +G L L+ L + ++ + L LD+S + + T + L
Sbjct: 78 ATNYNPISG-LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK-INTL 135
Query: 257 PFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNR 316
P + + LS N +I L+ L ++F+ I + KL +L
Sbjct: 136 PKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQT 192
Query: 317 LQG 319
+ G
Sbjct: 193 IGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 2e-12
Identities = 29/217 (13%), Positives = 70/217 (32%), Gaps = 50/217 (23%)
Query: 31 LNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFC 90
L + T ++SL + L+ ++ +++ +
Sbjct: 30 LGQSSTANITEAQMNSLTYITLANI--------NVTDLTGI------------------- 62
Query: 91 NHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFY 150
+ N++ L + + H + +S L L +
Sbjct: 63 EYAHNIKDLTINNI--HATNYNPISGLSNLER-------------------LRIMGKDVT 101
Query: 151 GEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQL 210
+ +++ + L +L + + +I +I+ L K+ +DL YN I L +L
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPEL 161
Query: 211 QWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAE 247
+ L++ + + + P L L S + +
Sbjct: 162 KSLNIQFDGVH-DYRGIE-DFPKLNQLYAFSQTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 1e-11
Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 11/136 (8%)
Query: 375 NLPFLEELYLSNNMFYGEIPSDT--QNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDL 432
+ L + L+N + T + ++ L + + P IS L+ LE+L +
Sbjct: 42 QMNSLTYITLANI----NVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRI 95
Query: 433 QYNRLQGT-IPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTN 491
+ IP L L LD+S + S+ + +P + +DLS N T++
Sbjct: 96 MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP- 154
Query: 492 VFHNLPFLEELYLSNN 507
LP L+ L + +
Sbjct: 155 -LKTLPELKSLNIQFD 169
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 15/120 (12%), Positives = 39/120 (32%), Gaps = 7/120 (5%)
Query: 422 SNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSS 481
S L + + L ++ L++ ++ L + ++ L +++
Sbjct: 20 STFKAYLNGLLGQS--STANITEAQMNSLTYITLANINVT-DLTGIE-YAHNIKDLTINN 75
Query: 482 NRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPKEI 541
+ N L LE L + + + + L +L + + +I +I
Sbjct: 76 IHATN---YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFG 83
L I G ++T L L+SL LD+S + SI I + + SI+ N
Sbjct: 91 ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150
Query: 84 ELPPNFCNHLSNLESLFLKSN 104
++ P L L+SL ++ +
Sbjct: 151 DIMPL--KTLPELKSLNIQFD 169
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 5e-20
Identities = 47/233 (20%), Positives = 94/233 (40%), Gaps = 16/233 (6%)
Query: 155 SDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLD 214
+ L+ + + A+ + L ++++ + ++ ++ +L + L
Sbjct: 18 FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQGIQYLPNVTKLF 74
Query: 215 LSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIP 274
L+ N+L+ + + L +L L N++ + +L L+ L L +N
Sbjct: 75 LNGNKLT-DIKPLA-NLKNLGWLFLDENKVKD---LSSLKDLKKLKSLSLEHNGI--SDI 127
Query: 275 SDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLD 334
+ + L L L N + +S LTKL+ L L+ N++ I+ + L +LQ L
Sbjct: 128 NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLY 184
Query: 335 LSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNN 387
LS N +S L + + L L+L S P N NL + ++
Sbjct: 185 LSKNHIS-DLRALA-GLKNLDVLELFSQECL-NKPINHQSNLVVPNTVKNTDG 234
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 1e-19
Identities = 48/230 (20%), Positives = 93/230 (40%), Gaps = 16/230 (6%)
Query: 278 ANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSD 337
+ L+ + + A+ + L ++++ + ++ ++ + +L + L L+
Sbjct: 21 DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQGIQYLPNVTKLFLNG 77
Query: 338 NQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDT 397
N+L+ + N+ L +L L N++ + +L L+ L L +N +
Sbjct: 78 NKLT-DIKPLA-NLKNLGWLFLDENKVKD---LSSLKDLKKLKSLSLEHNGI--SDINGL 130
Query: 398 QNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSD 457
+ L L L N +S LTKL+ L L+ N++ I L +LQ L LS
Sbjct: 131 VHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSK 187
Query: 458 NQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
N +S L + + L L+L S P N NL + ++
Sbjct: 188 NHIS-DLRALA-GLKNLDVLELFSQEC-LNKPINHQSNLVVPNTVKNTDG 234
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 2e-18
Identities = 56/239 (23%), Positives = 93/239 (38%), Gaps = 15/239 (6%)
Query: 126 SLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLT 185
+ F D + L K + + + ++ ++ + I L
Sbjct: 13 PIKQIFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLP 68
Query: 186 KLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLS 245
+ KL L NKL I +L L WL L +N++ L S K + L+ L L N +S
Sbjct: 69 NVTKLFLNGNKLT-DIKPLANLKNLGWLFLDENKVK-DLSSLK-DLKKLKSLSLEHNGIS 125
Query: 246 AELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLT 305
N +LP LE LYL NN + + + L L L N S +P ++ LT
Sbjct: 126 D---INGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLT 178
Query: 306 KLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRL 364
KL+ L L N + + + L L L+L + + + N+ + + + L
Sbjct: 179 KLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 1e-17
Identities = 51/232 (21%), Positives = 90/232 (38%), Gaps = 15/232 (6%)
Query: 255 NLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQY 314
+ L + + + + ++ ++ + I L + KL L
Sbjct: 22 AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNG 77
Query: 315 NRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFH 374
N+L I + +L L WL L +N++ L S K ++ L+ L L N +S N
Sbjct: 78 NKLT-DIKPLANLKNLGWLFLDENKVK-DLSSLK-DLKKLKSLSLEHNGISD---INGLV 131
Query: 375 NLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQY 434
+LP LE LYL NN + + L L L+ N +P ++ LTKL+ L L
Sbjct: 132 HLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187
Query: 435 NRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLST 486
N + + L L L+L + + + + + + + L T
Sbjct: 188 NHIS-DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 238
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 5e-12
Identities = 58/300 (19%), Positives = 106/300 (35%), Gaps = 66/300 (22%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALF 82
N+ ++T + L+S+ + + + I ++ +
Sbjct: 26 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNS--------DIKSVQGI----------- 64
Query: 83 GELPPNFCNHLSNLESLFLKSNMFHGKIP--STLSSCKRLRETSLSLNDFFWDHTKRNWQ 140
+L N+ LFL N K+ L++ K L
Sbjct: 65 --------QYLPNVTKLFLNGN----KLTDIKPLANLKNLGW------------------ 94
Query: 141 QLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGT 200
L+L +N + S + + L+ L L+ N S + +L +LE L L NK+
Sbjct: 95 -LFLDENKV--KDLSSLKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKIT-D 148
Query: 201 IPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLE 260
I L +L L L DNQ+S + + LQ L LS N +S L L+
Sbjct: 149 ITVLSRLTKLDTLSLEDNQIS-DIVPLA-GLTKLQNLYLSKNHISD---LRALAGLKNLD 203
Query: 261 ELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGT 320
L L + + + +N + + P+ IS+ EK +++++ + T
Sbjct: 204 VLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPEFT 261
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 6e-19
Identities = 53/181 (29%), Positives = 85/181 (46%), Gaps = 33/181 (18%)
Query: 331 QWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFY 390
+ LDL L+ + + L +L+L N+L L VF +L L L L+NN
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANN--- 93
Query: 391 GEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAG---HL 447
+ + P + +LT+L+KL L N+L+ ++P +G L
Sbjct: 94 ------------------QLASLPLGVFD---HLTQLDKLYLGGNQLK-SLP-SGVFDRL 130
Query: 448 FQLQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSN 506
+L+ L L+ NQL S+P+ F K+ LQ L LS+N+L + +P F L L+ + L
Sbjct: 131 TKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFG 188
Query: 507 N 507
N
Sbjct: 189 N 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 6e-17
Identities = 45/119 (37%), Positives = 60/119 (50%), Gaps = 14/119 (11%)
Query: 393 IPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAG---HLFQ 449
IP+DT+ L L+ LTKL L+L YN+LQ T+ AG L +
Sbjct: 33 IPADTEK------LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLS-AGVFDDLTE 84
Query: 450 LQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
L L L++NQL+ SLP F + L L L N+L LP+ VF L L+EL L+ N
Sbjct: 85 LGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTN 141
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 2e-16
Identities = 61/194 (31%), Positives = 84/194 (43%), Gaps = 43/194 (22%)
Query: 273 IPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVG---HLLQ 329
IP+DT L L+ + LTKL L+L YN+LQ L G L +
Sbjct: 33 IPADTEK------LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT--LSAGVFDDLTE 84
Query: 330 LQWLDLSDNQLSGSLPSFKF-NMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNM 388
L L L++NQL+ SLP F ++ L L L N+L LP+ VF L L+EL L+ N
Sbjct: 85 LGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQ 142
Query: 389 FYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEI-SNLTKLEKLDLQYNRLQGTIPYAG-- 445
+IP LT L+ L L N+LQ ++P+
Sbjct: 143 L-------------------------QSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFD 176
Query: 446 HLFQLQWLDLSDNQ 459
L +LQ + L NQ
Sbjct: 177 RLGKLQTITLFGNQ 190
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 2e-16
Identities = 61/193 (31%), Positives = 81/193 (41%), Gaps = 41/193 (21%)
Query: 153 IPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAG---HLYQ 209
IP+D L LQ + LTKL L+L YN+LQ T+ AG L +
Sbjct: 33 IPADTEK------LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLS-AGVFDDLTE 84
Query: 210 LQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNM 268
L L L++NQL+ SLP F + L L L N+L + LP+ VF L L+EL L+ N
Sbjct: 85 LGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQ 142
Query: 269 FYGEIPSDTANCSYLRILVLRFNNFSGAIPKEI-SNLTKLEKLDLQYNRLQGTILYV-GH 326
+IP LT L+ L L N+LQ
Sbjct: 143 L-------------------------QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Query: 327 LLQLQWLDLSDNQ 339
L +LQ + L NQ
Sbjct: 178 LGKLQTITLFGNQ 190
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 61/236 (25%), Positives = 94/236 (39%), Gaps = 59/236 (25%)
Query: 12 TGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSL 71
TG TC+ ++ G +L ++PS G + + LDL + ++ + F +
Sbjct: 8 TGCTCNEGK---KEVDCQGKSLD-SVPS--GIPADTEKLDLQSTGLA-TLSDATFRGLTK 60
Query: 72 LSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFF 131
L+ ++ L + L+ L +L L +N SL L F
Sbjct: 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL----------------ASLPLGVF- 103
Query: 132 WDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEI-SNLTKLEKL 190
DH +LYL N L+ ++P + LTKL++L
Sbjct: 104 -DHLT-QLDKLYLGGNQ-------------------LK------SLPSGVFDRLTKLKEL 136
Query: 191 DLQYNKLQGTIPYAG---HLYQLQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSN 242
L N+LQ +IP AG L LQ L LS NQL S+P F ++ LQ + L N
Sbjct: 137 RLNTNQLQ-SIP-AGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 4e-18
Identities = 37/157 (23%), Positives = 57/157 (36%), Gaps = 33/157 (21%)
Query: 355 QFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFP 414
+ L N + +P F L + LSNN E+ D F
Sbjct: 35 TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQI-SELAPDA------------FQG-- 78
Query: 415 GAIPKEISNLTKLEKLDLQYNRLQGTIPYAG---HLFQLQWLDLSDNQLSGSLPSFKF-K 470
L L L L N++ +P LF LQ L L+ N+++ L F
Sbjct: 79 ---------LRSLNSLVLYGNKIT-ELP-KSLFEGLFSLQLLLLNANKIN-CLRVDAFQD 126
Query: 471 MPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
+ L L L N+L T + F L ++ ++L+ N
Sbjct: 127 LHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 5e-18
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 10/120 (8%)
Query: 152 EIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAG---HLY 208
EIP+++ + + L+ N P S KL ++DL N++ + L
Sbjct: 25 EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELA-PDAFQGLR 80
Query: 209 QLQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNN 267
L L L N+++ LP F + LQ L L++N+++ L + F +L L L L +N
Sbjct: 81 SLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDN 138
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 4e-17
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 14/119 (11%)
Query: 273 IPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVG---HLLQ 329
+P + L N P S KL ++DL N++ L L
Sbjct: 30 LPETI------TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE--LAPDAFQGLRS 81
Query: 330 LQWLDLSDNQLSGSLPSFKF-NMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNN 387
L L L N+++ LP F + LQ L L++N+++ L + F +L L L L +N
Sbjct: 82 LNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDN 138
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 5e-17
Identities = 36/157 (22%), Positives = 56/157 (35%), Gaps = 33/157 (21%)
Query: 235 QFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFS 294
+ L N + +P F L + LSNN E+ D F
Sbjct: 35 TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQI-SELAPDA---------------FQ 77
Query: 295 GAIPKEISNLTKLEKLDLQYNRLQGTILYVG---HLLQLQWLDLSDNQLSGSLPSFKF-N 350
G L L L L N++ L L LQ L L+ N+++ L F +
Sbjct: 78 G--------LRSLNSLVLYGNKITE--LPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQD 126
Query: 351 MPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNN 387
+ L L L N+L + F L ++ ++L+ N
Sbjct: 127 LHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 6e-16
Identities = 41/170 (24%), Positives = 68/170 (40%), Gaps = 39/170 (22%)
Query: 176 AIPKEISNLTKLEKLDLQYNKLQGTIPYA-GHLYQLQWLDLSDNQLSGSLPSFKF-KMPL 233
IP + ++ L+ N ++ P A +L+ +DLS+NQ+S L F +
Sbjct: 25 EIPTNLPETI--TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRS 81
Query: 234 LQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNF 293
L L L N+++ LP ++F L L+ L L+ N +I
Sbjct: 82 LNSLVLYGNKITE-LPKSLFEGLFSLQLLLLNAN----KINC------------------ 118
Query: 294 SGAIPKEI-SNLTKLEKLDLQYNRLQ----GTILYVGHLLQLQWLDLSDN 338
+ + +L L L L N+LQ GT L +Q + L+ N
Sbjct: 119 ---LRVDAFQDLHNLNLLSLYDNKLQTIAKGT---FSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 4e-15
Identities = 37/156 (23%), Positives = 58/156 (37%), Gaps = 36/156 (23%)
Query: 213 LDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYG 271
+ L N + +P F L+ +DLS+N++S L + F L L L L N
Sbjct: 37 IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYGN---- 90
Query: 272 EIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQ----GTILYVGHL 327
+I L + F G L L+ L L N++ L
Sbjct: 91 ------------KITELPKSLFEG--------LFSLQLLLLNANKINCLRVDAF---QDL 127
Query: 328 LQLQWLDLSDNQLSGSLPSFKF-NMPLLQFLDLSSN 362
L L L DN+L ++ F + +Q + L+ N
Sbjct: 128 HNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 1e-13
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 416 AIPKEISNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPSFKF-KMPL 473
IP + ++ L+ N ++ P A +L+ +DLS+NQ+S L F +
Sbjct: 25 EIPTNLPETI--TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRS 81
Query: 474 LQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
L L L N++ TELP ++F L L+ L L+ N
Sbjct: 82 LNSLVLYGNKI-TELPKSLFEGLFSLQLLLLNAN 114
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 46/194 (23%), Positives = 66/194 (34%), Gaps = 54/194 (27%)
Query: 29 SGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIF-NMSSLLSINFINNALFGELPP 87
G LT IP+ L ++ + L N IP F L I+ NN + EL P
Sbjct: 19 RGKGLT-EIPTNL--PETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQI-SELAP 73
Query: 88 NFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKN 147
+ L +L SL L N T L + F + L
Sbjct: 74 DAFQGLRSLNSLVLYGNKI----------------TELPKSLF--EG---------LFS- 105
Query: 148 MFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEI-SNLTKLEKLDLQYNKLQGTIPYAG- 205
L++L+L N + + + +L L L L NKLQ TI
Sbjct: 106 ---------------LQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTF 148
Query: 206 -HLYQLQWLDLSDN 218
L +Q + L+ N
Sbjct: 149 SPLRAIQTMHLAQN 162
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 9e-18
Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 32/157 (20%)
Query: 355 QFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFP 414
L L++N +V T +F LP L ++ SNN +I ++ F
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNN----------------KITDIEEGAF- 77
Query: 415 GAIPKEISNLTKLEKLDLQYNRLQGTIPYAG---HLFQLQWLDLSDNQLSGSLPSFKF-K 470
+ + ++ L NRL+ + L L+ L L N+++ + + F
Sbjct: 78 -------EGASGVNEILLTSNRLE-NVQ-HKMFKGLESLKTLMLRSNRIT-CVGNDSFIG 127
Query: 471 MPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
+ ++ L L N+++T + F L L L L N
Sbjct: 128 LSSVRLLSLYDNQITT-VAPGAFDTLHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 6e-17
Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 32/157 (20%)
Query: 235 QFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFS 294
L L++N + T +F LP L ++ SNN +I + F
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNN----------------KITDIEEGAFE 78
Query: 295 GAIPKEISNLTKLEKLDLQYNRLQGTILYVG---HLLQLQWLDLSDNQLSGSLPSFKF-N 350
G + + ++ L NRL+ + L L+ L L N+++ + + F
Sbjct: 79 G--------ASGVNEILLTSNRLEN--VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIG 127
Query: 351 MPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNN 387
+ ++ L L N+++ + F L L L L N
Sbjct: 128 LSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 1e-06
Identities = 24/148 (16%), Positives = 47/148 (31%), Gaps = 32/148 (21%)
Query: 123 TSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDI-ANCSYLRILVLQFNNFSGAIPKEI 181
T L F +++ S N +I S + ++L N + ++
Sbjct: 45 TVLEATGIFKKLP--QLRKINFSNNKI-TDIEEGAFEGASGVNEILLTSNRLE-NVQHKM 100
Query: 182 -SNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKF-KMPLLQFLDL 239
L L+ L L+ N++ + + F + ++ L L
Sbjct: 101 FKGLESLKTLMLRSNRIT------------------------CVGNDSFIGLSSVRLLSL 136
Query: 240 SSNRLSAELPTNVFHNLPFLEELYLSNN 267
N+++ + F L L L L N
Sbjct: 137 YDNQITT-VAPGAFDTLHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 1e-05
Identities = 41/216 (18%), Positives = 66/216 (30%), Gaps = 65/216 (30%)
Query: 9 CNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIF-N 67
C T + C S L IP + L L+ N F+ IF
Sbjct: 11 CEGTTVDC------------SNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKK 55
Query: 68 MSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSL 127
+ L INF NN + ++ S + + L SN L +
Sbjct: 56 LPQLRKINFSNNKI-TDIEEGAFEGASGVNEILLTSNR--------LEN----------- 95
Query: 128 NDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEI-SNLTK 186
+ MF G L+ L+L+ N + + + L+
Sbjct: 96 ----------------VQHKMFKG--------LESLKTLMLRSNRIT-CVGNDSFIGLSS 130
Query: 187 LEKLDLQYNKLQGTIPYAG--HLYQLQWLDLSDNQL 220
+ L L N++ T+ L+ L L+L N
Sbjct: 131 VRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPF 165
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 84.9 bits (210), Expect = 1e-17
Identities = 70/488 (14%), Positives = 139/488 (28%), Gaps = 57/488 (11%)
Query: 66 FNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSL 125
+ + + P + S+ LK +
Sbjct: 38 YEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWI 97
Query: 126 SLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIA-NCSYLRILVLQF-NNFSGAIPKEI-S 182
+ +++ L + + + IA + ++LVL FS I +
Sbjct: 98 EA----MSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAA 153
Query: 183 NLTKLEKLDLQYNKL-----QGTIPYAGHLYQLQWLDLSDNQLS---GSLPSFKFKMPLL 234
L++LDL+ + + + L L++S +L + P L
Sbjct: 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNL 213
Query: 235 QFLDLSSNRLSAELPTNVFHNLPFLEELYLS------NNMFYGEIPSDTANCSYLRILVL 288
+ L L+ +L + P LEEL Y + + C LR L
Sbjct: 214 KSLKLNRAVPLEKL-ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG 272
Query: 289 RFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILY--VGHLLQLQWLDLSDNQLSGSLPS 346
++ +P S ++L L+L Y +Q L + +LQ L + D L
Sbjct: 273 FWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV 332
Query: 347 FKFNMPLLQFLDLSSNRLSVELPTN---------VFHNLPFLEELYLSNNMFYGEIPSD- 396
L+ L + + V P V P LE + ++
Sbjct: 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQM-----TNA 387
Query: 397 -----TQNCSYLRILVLKFNNFPG-----------AIPKEISNLTKLEKLDLQYNRLQGT 440
+N + L + + L +L L
Sbjct: 388 ALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKV 447
Query: 441 IPY-AGHLFQLQWLDLSDNQLSG-SLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPF 498
Y + +++ L ++ S + L+ L++ + L
Sbjct: 448 FEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507
Query: 499 LEELYLSN 506
+ L++S+
Sbjct: 508 MRSLWMSS 515
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 76.9 bits (189), Expect = 5e-15
Identities = 70/491 (14%), Positives = 147/491 (29%), Gaps = 57/491 (11%)
Query: 30 GLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIF-NMSSLLSINFINNALFGELP-P 87
G + I + + + L+ + L + I + + + + F
Sbjct: 90 GGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLA 149
Query: 88 NFCNHLSNLESLFLKSNMFHGKIPSTLS----SCKRLRETSLSLNDFFWDHTKRNWQQLY 143
NL+ L L+ + LS + L SL+++ + + ++L
Sbjct: 150 AIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLV--SLNISCLASEVSFSALERL- 206
Query: 144 LSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQY-------NK 196
+ C L+ L L + + +LE+L +
Sbjct: 207 -------------VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDV 253
Query: 197 LQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNL 256
G +L+ L + + LP+ L L+LS + + +
Sbjct: 254 YSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC 313
Query: 257 PFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNR 316
P L+ L++ + + + + C LR L + + + LT+
Sbjct: 314 PKLQRLWVLDYIEDAGLEVLASTCKDLRELRVF--PSEPFVMEPNVALTE---------- 361
Query: 317 LQGTILYVGHLLQLQWLDLSDNQLSG-SLPSFKFNMPLLQFLDLSSNRLSVELPTN---- 371
QG + +L+ + Q++ +L + N P + L
Sbjct: 362 -QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL 420
Query: 372 ------VFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEI-SNL 424
+ + L L LS + + +L + F + S
Sbjct: 421 DIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGC 480
Query: 425 TKLEKLDLQYNRL--QGTIPYAGHLFQLQWLDLSDNQLS-GSLPSFKFKMPLLQFLDLSS 481
L KL+++ + + A L ++ L +S +S G+ KMP L +
Sbjct: 481 DSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDE 540
Query: 482 NRLSTELPTNV 492
P +
Sbjct: 541 RGAPDSRPESC 551
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 7e-11
Identities = 48/314 (15%), Positives = 94/314 (29%), Gaps = 32/314 (10%)
Query: 233 LLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNN 292
+ A P V P + + L + + ++ +
Sbjct: 42 RWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGK----------PHFADFNLVPDGWGG 91
Query: 293 FSGAIPKEI-SNLTKLEKLDLQYNRLQGTILYV--GHLLQLQWLDLSD-NQLS-GSLPSF 347
+ + + S+ T LE++ L+ + L + + L LS S L +
Sbjct: 92 YVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI 151
Query: 348 KFNMPLLQFLDLSSNR---LSVELPTNVFHNLPFLEELYLSNNMFYGEIPSD-----TQN 399
L+ LDL + +S ++ L L +S E+
Sbjct: 152 AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISC--LASEVSFSALERLVTR 209
Query: 400 CSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNR-------LQGTIPYAGHLFQLQW 452
C L+ L L + + +LE+L G +L+
Sbjct: 210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRC 269
Query: 453 LDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGE 512
L + + LP+ L L+LS + + + P L+ L++ + +
Sbjct: 270 LSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAG 329
Query: 513 IPSDTPNCSYLRIL 526
+ C LR L
Sbjct: 330 LEVLASTCKDLREL 343
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 84.4 bits (208), Expect = 2e-17
Identities = 51/292 (17%), Positives = 89/292 (30%), Gaps = 35/292 (11%)
Query: 160 CSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQ 219
L L + ++ L ++ + + QL +LS +
Sbjct: 301 LCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEK 360
Query: 220 LSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHN-LPFLEELYLSNNMFYGEIPSDTA 278
+ + L + + L + + L + +E + P A
Sbjct: 361 STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 420
Query: 279 NCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDN 338
LR L N + L L + L + ++ LL + LDLS N
Sbjct: 421 YLDDLRSKFLLEN------SVLKMEYADVRVLHLAHKDLT-VLCHLEQLLLVTHLDLSHN 473
Query: 339 QLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQ 398
+L +LP + L+ L S N L + NLP L+EL L NN
Sbjct: 474 RLR-ALPPALAALRCLEVLQASDNALE-NVDG--VANLPRLQELLLCNN----------- 518
Query: 399 NCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQL 450
+ + + + +L L+LQ N L L ++
Sbjct: 519 ----------RLQQSAA--IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 82.1 bits (202), Expect = 9e-17
Identities = 47/307 (15%), Positives = 90/307 (29%), Gaps = 15/307 (4%)
Query: 208 YQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNN 267
+ + LS + L L + + ++L +
Sbjct: 245 LCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDL 304
Query: 268 MFYGEIPSDTANCSYLRILVLR-------FNNFSGAIPKEISNLTKLEKLDLQYNRLQGT 320
+ + + ++ + +L + +L +
Sbjct: 305 PAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVL 364
Query: 321 ILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLE 380
+ +LQ L+ + ++ + L + + S L
Sbjct: 365 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS-TLKAVDPMRA---A 420
Query: 381 ELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGT 440
L + F E + +R+L L + + + L + LDL +NRL+
Sbjct: 421 YLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRAL 478
Query: 441 IPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLE 500
P L L+ L SDN L ++ +P LQ L L +NRL + P L
Sbjct: 479 PPALAALRCLEVLQASDNALE-NVDGVA-NLPRLQELLLCNNRLQQSAAIQPLVSCPRLV 536
Query: 501 ELYLSNN 507
L L N
Sbjct: 537 LLNLQGN 543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 81.0 bits (199), Expect = 2e-16
Identities = 58/293 (19%), Positives = 95/293 (32%), Gaps = 38/293 (12%)
Query: 45 SSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFL--K 102
S + DL + +P F + S + L + P +C + E LF
Sbjct: 297 SHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCEL 356
Query: 103 SNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSY 162
S + S L SCK L+E + W L ++ E +
Sbjct: 357 SVEKSTVLQSELESCKELQELEP---ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 413
Query: 163 LRILVLQF-----NNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSD 217
+ + + + F + L L + L + + L + LDLS
Sbjct: 414 VDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCHLEQLLLVTHLDLSH 472
Query: 218 NQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDT 277
N+L +LP + L+ L S N L + NLP L+EL L NN
Sbjct: 473 NRLR-ALPPALAALRCLEVLQASDNALE-NVDG--VANLPRLQELLLCNN---------- 518
Query: 278 ANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQL 330
R + + + + +L L+LQ N L L ++
Sbjct: 519 -----------RLQQSAA--IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 77.5 bits (190), Expect = 3e-15
Identities = 56/355 (15%), Positives = 116/355 (32%), Gaps = 18/355 (5%)
Query: 154 PSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWL 213
P+D + Y R L+ + +S + G+ L +
Sbjct: 223 PNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMG----TLLLMV 278
Query: 214 DLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEI 273
D + + P + + + DL + L+ +LP + F + + +
Sbjct: 279 DEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRP 338
Query: 274 PSDTANCSYLRILVLRF--NNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQ 331
+ + L S + E+ + +L++L+ + TI+ + L
Sbjct: 339 ECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL--LMRALD 396
Query: 332 WLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYG 391
L L + K P+ + + + + L+L++
Sbjct: 397 PLLYEKETLQ-YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL-- 453
Query: 392 EIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQ 451
+ + + L L N A+P ++ L LE L N L+ + +L +LQ
Sbjct: 454 TVLCHLEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALE-NVDGVANLPRLQ 511
Query: 452 WLDLSDNQLSGSLPSFK--FKMPLLQFLDLSSNRLST--ELPTNVFHNLPFLEEL 502
L L +N+L + + P L L+L N L + + LP + +
Sbjct: 512 ELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 73.6 bits (180), Expect = 5e-14
Identities = 44/271 (16%), Positives = 83/271 (30%), Gaps = 8/271 (2%)
Query: 1 NWNTSSSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGN-LSSLQTLDLSFNWFSG 59
+ + W R V ++ +L +P + +
Sbjct: 277 MVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKD 336
Query: 60 SIPASIFNMSSLLS-INFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCK 118
+ ++ + + + L+ L ++ I + +
Sbjct: 337 RPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALD 396
Query: 119 RLRETSLSLNDF--FWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGA 176
L +L F L ++ F E + +R+L L + +
Sbjct: 397 PLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-- 454
Query: 177 IPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQF 236
+ + L + LDL +N+L+ P L L+ L SDN L ++ +P LQ
Sbjct: 455 VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVDGVA-NLPRLQE 512
Query: 237 LDLSSNRLSAELPTNVFHNLPFLEELYLSNN 267
L L +NRL + P L L L N
Sbjct: 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 2e-17
Identities = 60/327 (18%), Positives = 107/327 (32%), Gaps = 63/327 (19%)
Query: 210 LQWLDLSDNQLSG----SLPSFKFKMPLLQFLDLSSNRLS---AELPTNVFHNLPFLEEL 262
++ L + ++ S+ + + ++ + LS N + A + + LE
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 263 YLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQG-TI 321
S+ F G + + + + + KL + L N
Sbjct: 66 EFSDI-FTGRVKDEIPEAL-------------RLLLQALLKCPKLHTVRLSDNAFGPTAQ 111
Query: 322 LYVGHLLQ----LQWLDLSDNQLS-------------GSLPSFKFNMPLLQFLDLSSNRL 364
+ L L+ L L +N L ++ N P L+ + NRL
Sbjct: 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171
Query: 365 ---SVELPTNVFHNLPFLEELYLSNNMFYGE-----IPSDTQNCSYLRILVLKFNNF--P 414
S++ F + L + + N E + C L++L L+ N F
Sbjct: 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL 231
Query: 415 GA--IPKEISNLTKLEKLDLQYNRL--QGTIPYAGHL-----FQLQWLDLSDNQLSGS-- 463
G+ + + + L +L L L +G LQ L L N++
Sbjct: 232 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV 291
Query: 464 ---LPSFKFKMPLLQFLDLSSNRLSTE 487
KMP L FL+L+ NR S E
Sbjct: 292 RTLKTVIDEKMPDLLFLELNGNRFSEE 318
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 6e-16
Identities = 66/361 (18%), Positives = 113/361 (31%), Gaps = 77/361 (21%)
Query: 41 LGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLF 100
+ S ++ L + + ++ ++L + +++ +
Sbjct: 1 MARFS-IEGKSLKLDAIT---TEDEKSVFAVLLED------------------DSVKEIV 38
Query: 101 LKSNMFHGK----IPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSD 156
L N + + ++S K L +D F K + +
Sbjct: 39 LSGNTIGTEAARWLSENIASKKDL--EIAEFSDIFTGRVKDEIPEALRL-------LLQA 89
Query: 157 IANCSYLRILVLQFNNFSG----AIPKEISNLTKLEKLDLQYNKL--QGTIPYAGHLYQL 210
+ C L + L N F + +S T LE L L N L Q A L +L
Sbjct: 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL 149
Query: 211 QWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRL---SAELPTNVFHNLPFLEELYLSNN 267
+ N P L+ + NRL S + F + L + + N
Sbjct: 150 AVNKKAKN------------APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN 197
Query: 268 MFYGE-----IPSDTANCSYLRILVLRFNNFSG----AIPKEISNLTKLEKLDLQYNRLQ 318
E + A C L++L L+ N F+ A+ + + L +L L L
Sbjct: 198 GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257
Query: 319 -------GTILYVGHLLQLQWLDLSDNQLSGS-----LPSFKFNMPLLQFLDLSSNRLSV 366
+ LQ L L N++ MP L FL+L+ NR S
Sbjct: 258 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317
Query: 367 E 367
E
Sbjct: 318 E 318
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 9e-15
Identities = 56/342 (16%), Positives = 97/342 (28%), Gaps = 76/342 (22%)
Query: 157 IANCSYLRILVLQFNNFSG----AIPKEISNLTKLEKLDLQYNKL--QGTIPYAGHLY-- 208
+A S + L+ + + ++ + ++++ L N + + + ++
Sbjct: 1 MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59
Query: 209 -QLQWLDLSDNQLSGSLPSFKF----------KMPLLQFLDLSSNRLS---AELPTNVFH 254
L+ + SD K P L + LS N E +
Sbjct: 60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119
Query: 255 NLPFLEELYLSNNMF-------------YGEIPSDTANCSYLRILVLRFNNFSG----AI 297
LE LYL NN + N LR ++ N
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179
Query: 298 PKEISNLTKLEKLDLQYNRL--QGTILYVGHLLQ----LQWLDLSDNQ--------LSGS 343
K + L + + N + +G + L L+ LDL DN L+ +
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239
Query: 344 LPSFKFNMPLLQFLDLSSNRLSVE--------LPTNVFHNLPFLEELYLSNNMFYGE--- 392
L + P L+ L L+ LS L+ L L N +
Sbjct: 240 LK----SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG---LQTLRLQYNEIELDAVR 292
Query: 393 --IPSDTQNCSYLRILVLKFNNFP--GAIPKEISNLTKLEKL 430
+ L L L N F + EI +
Sbjct: 293 TLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGR 334
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 8e-17
Identities = 45/207 (21%), Positives = 87/207 (42%), Gaps = 21/207 (10%)
Query: 181 ISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLS 240
L K +L + + L +Q + ++ + SL + L+ L LS
Sbjct: 15 DPGLANAVKQNLGKQSVT-DLVSQKELSGVQNFNGDNSNIQ-SLAGMQ-FFTNLKELHLS 71
Query: 241 SNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKE 300
N++S + +L LEEL ++ N +A L L L N
Sbjct: 72 HNQISD---LSPLKDLTKLEELSVNRNRLKNLNGIPSAC---LSRLFLDNNELRDTDS-- 123
Query: 301 ISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLS 360
+ +L LE L ++ N+L+ +I+ +G L +L+ LDL N+++ + + + ++DL+
Sbjct: 124 LIHLKNLEILSIRNNKLK-SIVMLGFLSKLEVLDLHGNEIT-NTGGLT-RLKKVNWIDLT 180
Query: 361 SNRLSVELPTNVFHNLPFLEELYLSNN 387
+ E + + ELY++N
Sbjct: 181 GQKCVNE-------PVKYQPELYITNT 200
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 8e-14
Identities = 45/245 (18%), Positives = 85/245 (34%), Gaps = 22/245 (8%)
Query: 278 ANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSD 337
+ L + + + L+ ++ + + +Q ++ + L+ L LS
Sbjct: 16 PGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SLAGMQFFTNLKELHLSH 72
Query: 338 NQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDT 397
NQ+S L K ++ L+ L ++ NRL L L+L NN
Sbjct: 73 NQIS-DLSPLK-DLTKLEELSVNRNRLKNLNG----IPSACLSRLFLDNNEL--RDTDSL 124
Query: 398 QNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSD 457
+ L IL ++ N + L+KLE LDL N + L ++ W+DL+
Sbjct: 125 IHLKNLEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEIT-NTGGLTRLKKVNWIDLTG 181
Query: 458 NQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDT 517
+ ++ P L + + + N + + + P T
Sbjct: 182 QKCVNEPVKYQ---PELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWEL-----PVYT 233
Query: 518 PNCSY 522
SY
Sbjct: 234 DEVSY 238
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 8e-13
Identities = 45/232 (19%), Positives = 78/232 (33%), Gaps = 64/232 (27%)
Query: 206 HLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLS 265
L +L ++ L S K ++ +Q + ++ + + L+EL+LS
Sbjct: 17 GLANAVKQNLGKQSVT-DLVSQK-ELSGVQNFNGDNSNIQS---LAGMQFFTNLKELHLS 71
Query: 266 NNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVG 325
+N +I L + +LTKLE+L + NRL L
Sbjct: 72 HN----------------QISDL----------SPLKDLTKLEELSVNRNRL--KNLNGI 103
Query: 326 HLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLS 385
L L L +N+L S ++ L+ L + +N+L + L LE L L
Sbjct: 104 PSACLSRLFLDNNELR-DTDSLI-HLKNLEILSIRNNKLKSIVM---LGFLSKLEVLDLH 158
Query: 386 NNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRL 437
N I ++ L K+ +DL +
Sbjct: 159 GN----------------EITNTG----------GLTRLKKVNWIDLTGQKC 184
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 3e-09
Identities = 39/212 (18%), Positives = 70/212 (33%), Gaps = 15/212 (7%)
Query: 140 QQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQG 199
Q + + + + + L+ L L N S P + +LTKLE+L + N+L+
Sbjct: 44 QNFNGDNSNI--QSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK- 98
Query: 200 TIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFL 259
+ L L L +N+L S + L+ L + +N+L + + L L
Sbjct: 99 NLNGIPSA-CLSRLFLDNNELR-DTDSLI-HLKNLEILSIRNNKLKSIVM---LGFLSKL 152
Query: 260 EELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQG 319
E L L N + + L K L + R
Sbjct: 153 EVLDLHGNEI--TNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWI- 209
Query: 320 TILYVGHLLQLQWLDLSDNQLSG-SLPSFKFN 350
+ Y+ + + S+KF+
Sbjct: 210 SPYYISNGGSYVDGCVLWELPVYTDEVSYKFS 241
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 5e-09
Identities = 44/231 (19%), Positives = 87/231 (37%), Gaps = 45/231 (19%)
Query: 39 SELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLES 98
L++ +L S + S +S + + N N+ + L +NL+
Sbjct: 13 FPDPGLANAVKQNLGKQ--SVTDLVSQKELSGVQNFNGDNSNI-QSLAG--MQFFTNLKE 67
Query: 99 LFLKSNMFHGKIP--STLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSD 156
L L N +I S L +L E L +++N +
Sbjct: 68 LHLSHN----QISDLSPLKDLTKLEE-------------------LSVNRNRL-----KN 99
Query: 157 IANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLS 216
+ + L +N + +L LE L ++ NKL+ +I G L +L+ LDL
Sbjct: 100 LNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLK-SIVMLGFLSKLEVLDLH 158
Query: 217 DNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNN 267
N+++ + ++ + ++DL+ + E + + ELY++N
Sbjct: 159 GNEIT-NTGGLT-RLKKVNWIDLTGQKCVNE-------PVKYQPELYITNT 200
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 7e-16
Identities = 39/122 (31%), Positives = 55/122 (45%), Gaps = 15/122 (12%)
Query: 393 IPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAG---HLFQ 449
IP D L L N F +PKE+SN L +DL NR+ T+ ++ Q
Sbjct: 29 IPRDVTE------LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLS-NQSFSNMTQ 79
Query: 450 LQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNM 508
L L LS N+L +P F + L+ L L N +S +P F++L L L + N
Sbjct: 80 LLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGANP 137
Query: 509 FY 510
Y
Sbjct: 138 LY 139
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 9e-15
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 15/122 (12%)
Query: 153 IPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAG---HLYQ 209
IP D+ L L N F+ +PKE+SN L +DL N++ T+ ++ Q
Sbjct: 29 IPRDV------TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLS-NQSFSNMTQ 79
Query: 210 LQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNM 268
L L LS N+L +P F + L+ L L N +S +P F++L L L + N
Sbjct: 80 LLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGANP 137
Query: 269 FY 270
Y
Sbjct: 138 LY 139
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 2e-14
Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 15/122 (12%)
Query: 273 IPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVG---HLLQ 329
IP D L L N F+ +PKE+SN L +DL NR+ L ++ Q
Sbjct: 29 IPRDV------TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS--TLSNQSFSNMTQ 79
Query: 330 LQWLDLSDNQLSGSLPSFKFN-MPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNM 388
L L LS N+L +P F+ + L+ L L N +S +P F++L L L + N
Sbjct: 80 LLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANP 137
Query: 389 FY 390
Y
Sbjct: 138 LY 139
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 5e-14
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 176 AIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKF-KMPLL 234
+PK I +L L N+ + L +DLS+N++S +L + F M L
Sbjct: 24 VLPKGIPRDV--TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQL 80
Query: 235 QFLDLSSNRLSAELPTNVFHNLPFLEELYLSNN 267
L LS NRL +P F L L L L N
Sbjct: 81 LTLILSYNRLRC-IPPRTFDGLKSLRLLSLHGN 112
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 2e-13
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 416 AIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKF-KMPLL 474
+PK I +L L N+ + L +DLS+N++S +L + F M L
Sbjct: 24 VLPKGIPRDV--TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQL 80
Query: 475 QFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
L LS NRL +P F L L L L N
Sbjct: 81 LTLILSYNRL-RCIPPRTFDGLKSLRLLSLHGN 112
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 5e-13
Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 296 AIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKF-NMPLL 354
+PK I +L L N+ + + L +DLS+N++S +L + F NM L
Sbjct: 24 VLPKGIPRDV--TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQL 80
Query: 355 QFLDLSSNRLSVELPTNVFHNLPFLEELYLSNN 387
L LS NRL +P F L L L L N
Sbjct: 81 LTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGN 112
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 2e-08
Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 33/132 (25%)
Query: 235 QFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFS 294
L L N+ + N L + LSNN RI L +FS
Sbjct: 34 TELYLDGNQFTLV--PKELSNYKHLTLIDLSNN----------------RISTLSNQSFS 75
Query: 295 GAIPKEISNLTKLEKLDLQYNRLQGTILYVG---HLLQLQWLDLSDNQLSGSLPSFKF-N 350
N+T+L L L YNRL+ + L L+ L L N +S +P F +
Sbjct: 76 --------NMTQLLTLILSYNRLRC--IPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFND 124
Query: 351 MPLLQFLDLSSN 362
+ L L + +N
Sbjct: 125 LSALSHLAIGAN 136
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 3e-15
Identities = 43/119 (36%), Positives = 60/119 (50%), Gaps = 14/119 (11%)
Query: 393 IPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAG---HLFQ 449
IP+ T L L+ N+ LT L +L L N+LQ ++P G L
Sbjct: 26 IPAQTTY------LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLP-NGVFNKLTS 77
Query: 450 LQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
L +L+LS NQL SLP+ F K+ L+ L L++N+L LP VF L L++L L N
Sbjct: 78 LTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQN 134
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 3e-14
Identities = 41/108 (37%), Positives = 57/108 (52%), Gaps = 8/108 (7%)
Query: 164 RILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAG---HLYQLQWLDLSDNQL 220
L L+ N+ LT L +L L NKLQ ++P G L L +L+LS NQL
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLP-NGVFNKLTSLTYLNLSTNQL 88
Query: 221 SGSLPSFKF-KMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNN 267
SLP+ F K+ L+ L L++N+L + LP VF L L++L L N
Sbjct: 89 Q-SLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQN 134
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 2e-13
Identities = 42/119 (35%), Positives = 57/119 (47%), Gaps = 14/119 (11%)
Query: 273 IPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVG---HLLQ 329
IP+ T L L N+ LT L +L L N+LQ L G L
Sbjct: 26 IPAQTTY------LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS--LPNGVFNKLTS 77
Query: 330 LQWLDLSDNQLSGSLPSFKFN-MPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNN 387
L +L+LS NQL SLP+ F+ + L+ L L++N+L LP VF L L++L L N
Sbjct: 78 LTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQN 134
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 1e-12
Identities = 52/157 (33%), Positives = 73/157 (46%), Gaps = 33/157 (21%)
Query: 355 QFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFP 414
+LDL +N L LP VF L L +LYL N K + P
Sbjct: 31 TYLDLETNSLK-SLPNGVFDELTSLTQLYLGGN---------------------KLQSLP 68
Query: 415 GAIPKEISNLTKLEKLDLQYNRLQGTIPYAG---HLFQLQWLDLSDNQLSGSLPSFKF-K 470
+ + LT L L+L N+LQ ++P G L QL+ L L+ NQL SLP F K
Sbjct: 69 NGVFNK---LTSLTYLNLSTNQLQ-SLP-NGVFDKLTQLKELALNTNQLQ-SLPDGVFDK 122
Query: 471 MPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
+ L+ L L N+L + +P VF L L+ ++L +N
Sbjct: 123 LTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 158
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 4e-11
Identities = 53/168 (31%), Positives = 74/168 (44%), Gaps = 33/168 (19%)
Query: 296 AIPKEISNLTKLEKLDLQYNRLQGTILYVGH-LLQLQWLDLSDNQLSGSLPSFKFNMPL- 353
++P I T LDL+ N L+ V L L L L N+L SLP+ FN
Sbjct: 21 SVPTGIPAQT--TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTS 77
Query: 354 LQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNF 413
L +L+LS+N+L LP VF L L+EL L+ N +P
Sbjct: 78 LTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQL-QSLP------------------- 116
Query: 414 PGAIPKEISNLTKLEKLDLQYNRLQGTIPYAG--HLFQLQWLDLSDNQ 459
G K LT+L+ L L N+L+ ++P L LQ++ L DN
Sbjct: 117 DGVFDK----LTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNP 159
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 1e-10
Identities = 53/193 (27%), Positives = 73/193 (37%), Gaps = 61/193 (31%)
Query: 176 AIPKEISNLTKLEKLDLQYNKLQGTIPYAGH-LYQLQWLDLSDNQLSGSLPSFKFKMPL- 233
++P I T LDL+ N L+ L L L L N+L SLP+ F
Sbjct: 21 SVPTGIPAQT--TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTS 77
Query: 234 LQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNF 293
L +L+LS+N+L + LP VF L
Sbjct: 78 LTYLNLSTNQLQS-LPNGVFDKL------------------------------------- 99
Query: 294 SGAIPKEISNLTKLEKLDLQYNRLQGTILYVG---HLLQLQWLDLSDNQLSGSLPSFKF- 349
T+L++L L N+LQ L G L QL+ L L NQL S+P F
Sbjct: 100 -----------TQLKELALNTNQLQS--LPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFD 145
Query: 350 NMPLLQFLDLSSN 362
+ LQ++ L N
Sbjct: 146 RLTSLQYIWLHDN 158
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 30/108 (27%)
Query: 163 LRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAG---HLYQLQWLDLSDNQ 219
L L L N LT+L++L L N+LQ ++P G L QL+ L L NQ
Sbjct: 78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLP-DGVFDKLTQLKDLRLYQNQ 135
Query: 220 LSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNN 267
L +P VF L L+ ++L +N
Sbjct: 136 LKS-------------------------VPDGVFDRLTSLQYIWLHDN 158
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 76.5 bits (188), Expect = 7e-15
Identities = 57/389 (14%), Positives = 112/389 (28%), Gaps = 41/389 (10%)
Query: 158 ANCSYLRILVLQF-NNFSGAIPKEI-SNLTKLEKLDLQYNKL-----QGTIPYAGHLYQL 210
A L L L + F+ I ++ K++ L ++ + + A H L
Sbjct: 135 ARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSL 194
Query: 211 QWLDLSDNQLSG----SLPSFKFKMPLLQFLDLSS-NRLSAELPTNVFHNLPFLEELYLS 265
+ L+ + + L + L + + L NL L+
Sbjct: 195 EVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLN 254
Query: 266 NNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQ--GTILY 323
++ E + L L L + + +P ++ KLDL Y L+
Sbjct: 255 EDIGMPEKYMNLVFPRKLCRLGLSYMGPNE-MPILFPFAAQIRKLDLLYALLETEDHCTL 313
Query: 324 VGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTN-----------V 372
+ L+ L+ + L L+ L + + +
Sbjct: 314 IQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL 373
Query: 373 FHNLPFLEELYLSNNMF----YGEIPSDTQNCSYLRILVL------KFNNFPGAIPKEIS 422
LE + + + I + +N R+++L + +
Sbjct: 374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLI 433
Query: 423 NLTKLEKLDLQYNRLQ----GTIPYAGHLFQLQWLDLSDNQLS-GSLPSFKFKMPLLQFL 477
KL + + G + ++W+ L S L F P LQ L
Sbjct: 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL 493
Query: 478 DLSSNRLSTELPTNVFHNLPFLEELYLSN 506
++ S LP L L++
Sbjct: 494 EMRGCCFSERAIAAAVTKLPSLRYLWVQG 522
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 2e-11
Identities = 69/521 (13%), Positives = 150/521 (28%), Gaps = 91/521 (17%)
Query: 21 YRVTALNISGLNL----TVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINF 76
+++ + + + T T +L++L L M +L+ N+
Sbjct: 45 FKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGK--------PRAAMFNLIPENW 96
Query: 77 INNALFGELPPNFCNHLSNLESLFLKSNMF--HGKIPSTLSSCKRLRETSLSLNDFFWDH 134
N+L L+S+ + + + L L F
Sbjct: 97 GGYVTPWVT--EISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTD 154
Query: 135 T-------KRNWQQLYLSKNMFYGEIPSDIA----NCSYLRILVLQFNNFSG----AIPK 179
R + L + ++ F + + + + L +L F+ +
Sbjct: 155 GLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET 214
Query: 180 EISNLTKLEKLDLQYNK---LQGTIPYAGHLYQLQWLDLSDNQLSG-------------- 222
N L + + + L G A +L + L+++
Sbjct: 215 IARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCR 274
Query: 223 ---------SLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEI 273
+P ++ LDL L E + P LE L N + +
Sbjct: 275 LGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGL 334
Query: 274 PSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWL 333
C L+ L + + E +++ +G I +L+++
Sbjct: 335 EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ-----------RGLIALAQGCQELEYM 383
Query: 334 DLSDNQLS-GSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGE 392
+ + ++ SL S + L L + ++ +++
Sbjct: 384 AVYVSDITNESLESIGTYLKNLCDFRL----VLLDREER------------ITDLPLDNG 427
Query: 393 IPSDTQNCSYLRILVLKFN--NFPGAIPKEI-SNLTKLEKLDLQYNRL--QGTIPYAGHL 447
+ S C LR I + + L Y +G + ++
Sbjct: 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGC 487
Query: 448 FQLQWLDLSDNQLS-GSLPSFKFKMPLLQFLDLSSNRLSTE 487
LQ L++ S ++ + K+P L++L + R S
Sbjct: 488 PNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 9e-08
Identities = 47/308 (15%), Positives = 87/308 (28%), Gaps = 27/308 (8%)
Query: 239 LSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIP 298
++ P + P L L L N +
Sbjct: 55 VTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTE-------- 106
Query: 299 KEISNLTKLEKLDLQYNRLQGTILYV---GHLLQLQWLDLSD-NQLSG-SLPSFKFNMPL 353
+NL +L+ + + + L L+ L L + + L S +
Sbjct: 107 -ISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRK 165
Query: 354 LQFLDLSSNRL---SVELPTNVFHNLPFLEELYLSNNMFYG----EIPSDTQNCSYLRIL 406
++ L + + + + + LE L F ++ + +NC L +
Sbjct: 166 IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225
Query: 407 VLKFNNF--PGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSG-- 462
+ K +NL + L N G +L + L G
Sbjct: 226 KVGDFEILELVGFFKAAANLEEFCGGSL--NEDIGMPEKYMNLVFPRKLCRLGLSYMGPN 283
Query: 463 SLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSY 522
+P ++ LDL L TE + P LE L N + + C
Sbjct: 284 EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ 343
Query: 523 LRILVVQF 530
L+ L ++
Sbjct: 344 LKRLRIER 351
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 2e-14
Identities = 43/156 (27%), Positives = 65/156 (41%), Gaps = 32/156 (20%)
Query: 355 QFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFP 414
Q L L N+++ +L VF +L L+ELYL +N + P
Sbjct: 43 QILYLHDNQIT-KLEPGVFDSLINLKELYLGSN---------------------QLGALP 80
Query: 415 GAIPKEISNLTKLEKLDLQYNRLQGTIPYAG---HLFQLQWLDLSDNQLSGSLPSFKFKM 471
+ LT+L LDL N+L +P + L L+ L + N+L+ LP ++
Sbjct: 81 VGVFDS---LTQLTVLDLGTNQLT-VLP-SAVFDRLVHLKELFMCCNKLT-ELPRGIERL 134
Query: 472 PLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
L L L N+L + +P F L L YL N
Sbjct: 135 THLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFGN 169
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 3e-14
Identities = 40/145 (27%), Positives = 59/145 (40%), Gaps = 31/145 (21%)
Query: 176 AIPKEISNLTKLEKLDLQYNKLQGTIPYAGH-LYQLQWLDLSDNQLSGSLPSFKF-KMPL 233
++P I + L L N++ P L L+ L L NQL +LP F +
Sbjct: 33 SVPAGIPTNA--QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQ 89
Query: 234 LQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNF 293
L LDL +N+L+ LP+ VF L L+EL++ N
Sbjct: 90 LTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKL------------------------ 124
Query: 294 SGAIPKEISNLTKLEKLDLQYNRLQ 318
+P+ I LT L L L N+L+
Sbjct: 125 -TELPRGIERLTHLTHLALDQNQLK 148
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 1e-13
Identities = 41/119 (34%), Positives = 54/119 (45%), Gaps = 15/119 (12%)
Query: 393 IPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAG---HLFQ 449
IP++ Q L L N P +L L++L L N+L +P G L Q
Sbjct: 38 IPTNAQI------LYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALP-VGVFDSLTQ 89
Query: 450 LQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
L LDL NQL+ LPS F ++ L+ L + N+L TELP L L L L N
Sbjct: 90 LTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKL-TELP-RGIERLTHLTHLALDQN 145
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 5e-13
Identities = 47/167 (28%), Positives = 68/167 (40%), Gaps = 32/167 (19%)
Query: 296 AIPKEISNLTKLEKLDLQYNRLQGTILYVGH-LLQLQWLDLSDNQLSGSLPSFKFN-MPL 353
++P I + L L N++ V L+ L+ L L NQL +LP F+ +
Sbjct: 33 SVPAGIPTNA--QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQ 89
Query: 354 LQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNF 413
L LDL +N+L+V LP+ VF L L+EL++ N L
Sbjct: 90 LTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNK-------------------LT---- 125
Query: 414 PGAIPKEISNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQ 459
+P+ I LT L L L N+L+ A L L L N
Sbjct: 126 --ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 1e-12
Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 15/119 (12%)
Query: 153 IPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAG---HLYQ 209
IP++ +IL L N + P +L L++L L N+L +P G L Q
Sbjct: 38 IPTN------AQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALP-VGVFDSLTQ 89
Query: 210 LQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNN 267
L LDL NQL+ LPS F ++ L+ L + N+L+ LP L L L L N
Sbjct: 90 LTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLTE-LP-RGIERLTHLTHLALDQN 145
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 7e-12
Identities = 41/119 (34%), Positives = 56/119 (47%), Gaps = 15/119 (12%)
Query: 273 IPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVG---HLLQ 329
IP++ +IL L N + P +L L++L L N+L L VG L Q
Sbjct: 38 IPTNA------QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA--LPVGVFDSLTQ 89
Query: 330 LQWLDLSDNQLSGSLPSFKFN-MPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNN 387
L LDL NQL+ LPS F+ + L+ L + N+L+ ELP L L L L N
Sbjct: 90 LTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELP-RGIERLTHLTHLALDQN 145
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 2e-13
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 15/120 (12%)
Query: 393 IPSDTQNCSYLRILVLKFNNFPGAIPKEI-SNLTKLEKLDLQYNRLQGTIPYAG---HLF 448
IP T L+L N + L L KL+L+ N+L I
Sbjct: 27 IPLHTTE------LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIE-PNAFEGAS 78
Query: 449 QLQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
+Q L L +N++ + + F + L+ L+L N++S + F +L L L L++N
Sbjct: 79 HIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASN 136
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 9e-13
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 11/120 (9%)
Query: 153 IPSDIANCSYLRILVLQFNNFSGAIPKEI-SNLTKLEKLDLQYNKLQGTIPYAG---HLY 208
IP DI + L+L N + L L KL+L+ N+L I
Sbjct: 23 IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIE-PNAFEGAS 78
Query: 209 QLQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNN 267
+Q L L +N++ + + F + L+ L+L N++S + F +L L L L++N
Sbjct: 79 HIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASN 136
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 6e-12
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 9/96 (9%)
Query: 416 AIPKEISNLTKLEKLDLQYNRLQGTIPYAG---HLFQLQWLDLSDNQLSGSLPSFKF-KM 471
IP++I T +L L N L I G L L L+L NQL+ + F
Sbjct: 22 EIPRDIPLHT--TELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGA 77
Query: 472 PLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
+Q L L N++ E+ +F L L+ L L +N
Sbjct: 78 SHIQELQLGENKI-KEISNKMFLGLHQLKTLNLYDN 112
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 2e-11
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 273 IPSDTANCSYLRILVLRFNNFSGAIPKEI-SNLTKLEKLDLQYNRLQGTILYVG---HLL 328
IP T L+L N + L L KL+L+ N+L G +
Sbjct: 27 IPLHT------TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG--IEPNAFEGAS 78
Query: 329 QLQWLDLSDNQLSGSLPSFKFN-MPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNN 387
+Q L L +N++ + + F + L+ L+L N++S + F +L L L L++N
Sbjct: 79 HIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASN 136
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 2e-09
Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 31/132 (23%)
Query: 235 QFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFS 294
L L+ N L +F LP L +L L N ++ + N F
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRN----------------QLTGIEPNAFE 75
Query: 295 GAIPKEISNLTKLEKLDLQYNRLQGTILYVG---HLLQLQWLDLSDNQLSGSLPSFKF-N 350
G + +++L L N+++ + L QL+ L+L DNQ+S + F +
Sbjct: 76 G--------ASHIQELQLGENKIKE--ISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEH 124
Query: 351 MPLLQFLDLSSN 362
+ L L+L+SN
Sbjct: 125 LNSLTSLNLASN 136
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 3e-05
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 10/109 (9%)
Query: 140 QQLYLSKNMFYGEIPSDIA--NCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKL 197
+L L+ N G I SD +L L L+ N +G P + +++L L NK+
Sbjct: 32 TELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90
Query: 198 QGTIPYAG---HLYQLQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSN 242
+ I L+QL+ L+L DNQ+S + F + L L+L+SN
Sbjct: 91 K-EIS-NKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 4e-13
Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 2/109 (1%)
Query: 279 NCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDN 338
N R L LR I + L + + +D N ++ + L +L+ L +++N
Sbjct: 17 NAVRDRELDLR-GYKIPVIENLGATLDQFDAIDFSDNEIR-KLDGFPLLRRLKTLLVNNN 74
Query: 339 QLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNN 387
++ +P L L L++N L + +L L L + N
Sbjct: 75 RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 1e-12
Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 2/109 (1%)
Query: 159 NCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDN 218
N R L L+ I + L + + +D N+++ + L +L+ L +++N
Sbjct: 17 NAVRDRELDLR-GYKIPVIENLGATLDQFDAIDFSDNEIR-KLDGFPLLRRLKTLLVNNN 74
Query: 219 QLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNN 267
++ +P L L L++N L + +L L L + N
Sbjct: 75 RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 3e-12
Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 2/110 (1%)
Query: 398 QNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSD 457
N R L L+ P I + L + + +D N ++ + L +L+ L +++
Sbjct: 16 TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDGFPLLRRLKTLLVNN 73
Query: 458 NQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
N++ +P L L L++N L + +L L L + N
Sbjct: 74 NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 2e-10
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 420 EISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDL 479
+ +N + +LDL+ ++ L Q +D SDN++ L F + L+ L +
Sbjct: 14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR-KLDGFP-LLRRLKTLLV 71
Query: 480 SSNRLSTELPTNVFHNLPFLEELYLSNN 507
++NR+ + + LP L EL L+NN
Sbjct: 72 NNNRICR-IGEGLDQALPDLTELILTNN 98
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 2e-08
Identities = 25/150 (16%), Positives = 53/150 (35%), Gaps = 10/150 (6%)
Query: 190 LDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELP 249
+ L ++ + + + LDL ++ + + + +D S N +
Sbjct: 2 VKLTAELIE-QAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR---K 56
Query: 250 TNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSG-AIPKEISNLTKLE 308
+ F L L+ L ++NN L L+L N+ +++L L
Sbjct: 57 LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116
Query: 309 KLDLQYNRLQGTILY----VGHLLQLQWLD 334
L + N + Y + + Q++ LD
Sbjct: 117 YLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 27/136 (19%), Positives = 42/136 (30%), Gaps = 15/136 (11%)
Query: 114 LSSCKRLRETSLSLNDF----FWDHTKRNWQQLYLSKNMFYGEIPS--DIANCSYLRILV 167
++ R RE L T + + S N EI L+ L+
Sbjct: 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN----EIRKLDGFPLLRRLKTLL 70
Query: 168 LQFNNFSGAIPKEISNLTKLEKLDLQYNKLQ--GTIPYAGHLYQLQWLDLSDN---QLSG 222
+ N L L +L L N L G + L L +L + N
Sbjct: 71 VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 130
Query: 223 SLPSFKFKMPLLQFLD 238
+K+P ++ LD
Sbjct: 131 YRLYVIYKVPQVRVLD 146
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 4e-04
Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 4/89 (4%)
Query: 446 HLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLS 505
+ + + LDL ++ + + + +D S N + + F L L+ L ++
Sbjct: 17 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK---LDGFPLLRRLKTLLVN 72
Query: 506 NNMFYGEIPSDTPNCSYLRILVVQFNNFS 534
NN L L++ N+
Sbjct: 73 NNRICRIGEGLDQALPDLTELILTNNSLV 101
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 6e-13
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 10/144 (6%)
Query: 152 EIPSDIANCSYLRILVLQFNNFSGAIPKEISNL---TKLEKLDLQYNKLQGTIPYAGHLY 208
++ + ++ + L L NN +IS+L L L L N ++
Sbjct: 39 KMDATLSTLKACKHLALSTNNIE-----KISSLSGMENLRILSLGRNLIKKIENLDAVAD 93
Query: 209 QLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNM 268
L+ L +S NQ++ SL + K+ L+ L +S+N+++ + L LE+L L+ N
Sbjct: 94 TLEELWISYNQIA-SLSGIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151
Query: 269 FYGEIPSDTANCSYLRILVLRFNN 292
Y + + A Y +V R N
Sbjct: 152 LYNDYKENNATSEYRIEVVKRLPN 175
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 1e-12
Identities = 34/158 (21%), Positives = 57/158 (36%), Gaps = 19/158 (12%)
Query: 286 LVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLP 345
L + +S L + L L N ++ I + + L+ L L N + +
Sbjct: 30 LHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KISSLSGMENLRILSLGRNLIK-KIE 86
Query: 346 SFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMF--YGEIPSDTQNCSYL 403
+ L+ L +S N+++ + L L LY+SNN +GEI L
Sbjct: 87 NLDAVADTLEELWISYNQIAS---LSGIEKLVNLRVLYMSNNKITNWGEI-DKLAALDKL 142
Query: 404 RILVLKFN----------NFPGAIPKEISNLTKLEKLD 431
L+L N + + L L+KLD
Sbjct: 143 EDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 5e-12
Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 9/154 (5%)
Query: 381 ELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPK--EISNLTKLEKLDLQYNRLQ 438
EL+ ++ + + L L NN I K +S + L L L N ++
Sbjct: 29 ELHGMIPPI-EKMDATLSTLKACKHLALSTNN----IEKISSLSGMENLRILSLGRNLIK 83
Query: 439 GTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPF 498
L+ L +S NQ++ SL + K+ L+ L +S+N+++ + L
Sbjct: 84 KIENLDAVADTLEELWISYNQIA-SLSGIE-KLVNLRVLYMSNNKITNWGEIDKLAALDK 141
Query: 499 LEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNN 532
LE+L L+ N Y + + Y +V + N
Sbjct: 142 LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPN 175
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 4e-09
Identities = 38/196 (19%), Positives = 61/196 (31%), Gaps = 53/196 (27%)
Query: 180 EISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLS-----GSLPSFKFKMPLL 234
+ K+E L ++ L + L LS N + + + L
Sbjct: 21 VATEAEKVE-LHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMEN-------L 72
Query: 235 QFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFS 294
+ L L N + N+ LEEL++S N +I L
Sbjct: 73 RILSLGRNLIKK--IENLDAVADTLEELWISYN----------------QIASL------ 108
Query: 295 GAIPKEISNLTKLEKLDLQYNRLQ--GTILYVGHLLQLQWLDLSDNQLSGSLPSFK---- 348
I L L L + N++ G I + L +L+ L L+ N L
Sbjct: 109 ----SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE 164
Query: 349 ------FNMPLLQFLD 358
+P L+ LD
Sbjct: 165 YRIEVVKRLPNLKKLD 180
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 2e-08
Identities = 38/196 (19%), Positives = 62/196 (31%), Gaps = 53/196 (27%)
Query: 300 EISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLS-----GSLPSFKFNMPLL 354
+ K+E L ++ + L + L LS N + + + L
Sbjct: 21 VATEAEKVE-LHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMEN-------L 72
Query: 355 QFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFP 414
+ L L N + N+ LEEL++S N +I L
Sbjct: 73 RILSLGRNLIKK--IENLDAVADTLEELWISYN----------------QIASL------ 108
Query: 415 GAIPKEISNLTKLEKLDLQYNRLQ--GTIPYAGHLFQLQWLDLSDNQLSGSLPSFK---- 468
I L L L + N++ G I L +L+ L L+ N L
Sbjct: 109 ----SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE 164
Query: 469 ------FKMPLLQFLD 478
++P L+ LD
Sbjct: 165 YRIEVVKRLPNLKKLD 180
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 7e-13
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 14/119 (11%)
Query: 393 IPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAG---HLFQ 449
IPS L L+ N LT+L KL L N++Q ++P G L +
Sbjct: 26 IPSSATR------LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLP-DGVFDKLTK 77
Query: 450 LQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
L L L +N+L SLP+ F K+ L+ L L +N+L + +P +F L L++++L N
Sbjct: 78 LTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 134
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 5e-12
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 14/119 (11%)
Query: 153 IPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAG---HLYQ 209
IPS L L+ N LT+L KL L N++Q ++P G L +
Sbjct: 26 IPSS------ATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLP-DGVFDKLTK 77
Query: 210 LQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNN 267
L L L +N+L SLP+ F K+ L+ L L +N+L + +P +F L L++++L N
Sbjct: 78 LTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 134
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 5e-12
Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 416 AIPKEISNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPSFKF-KMPL 473
++P I + +L+L+ N+LQ L QL L LS NQ+ SLP F K+
Sbjct: 21 SVPTGIPSSA--TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTK 77
Query: 474 LQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
L L L N+L LP VF L L+EL L N
Sbjct: 78 LTILYLHENKL-QSLPNGVFDKLTQLKELALDTN 110
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 6e-12
Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 16/120 (13%)
Query: 273 IPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVG---HLLQ 329
IPS L L N LT+L KL L N++Q L G L +
Sbjct: 26 IPSSA------TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS--LPDGVFDKLTK 77
Query: 330 LQWLDLSDNQLSGSLPSFKF-NMPLLQFLDLSSNRL-SVELPTNVFHNLPFLEELYLSNN 387
L L L +N+L SLP+ F + L+ L L +N+L SV P +F L L++++L N
Sbjct: 78 LTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSV--PDGIFDRLTSLQKIWLHTN 134
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-07
Identities = 42/133 (31%), Positives = 59/133 (44%), Gaps = 34/133 (25%)
Query: 355 QFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFP 414
L+L SN+L LP VF L L +L LS N ++
Sbjct: 31 TRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQ-------------------IQ----- 65
Query: 415 GAIPKEI-SNLTKLEKLDLQYNRLQGTIPYAG---HLFQLQWLDLSDNQLSGSLPSFKF- 469
++P + LTKL L L N+LQ ++P G L QL+ L L NQL S+P F
Sbjct: 66 -SLPDGVFDKLTKLTILYLHENKLQ-SLP-NGVFDKLTQLKELALDTNQLK-SVPDGIFD 121
Query: 470 KMPLLQFLDLSSN 482
++ LQ + L +N
Sbjct: 122 RLTSLQKIWLHTN 134
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 3e-12
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
Query: 398 QNCSYLRILVL-KFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLS 456
+ + +R LVL + G I + LE L L L ++ L +L+ L+LS
Sbjct: 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSNLPKLPKLKKLELS 79
Query: 457 DNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
+N++ G L K+P L L+LS N+L L L+ L L N
Sbjct: 80 ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 5e-12
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
Query: 159 NCSYLRILVL-QFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSD 217
+ +R LVL + G I + LE L L L ++ L +L+ L+LS+
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSNLPKLPKLKKLELSE 80
Query: 218 NQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNN 267
N++ G L K+P L L+LS N+L L L+ L L N
Sbjct: 81 NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 1e-11
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
Query: 279 NCSYLRILVLRFNNFS-GAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSD 337
+ +R LVL + G I + LE L L L ++ + L +L+ L+LS+
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSNLPKLPKLKKLELSE 80
Query: 338 NQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNN 387
N++ G L +P L L+LS N+L L L+ L L N
Sbjct: 81 NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 3e-07
Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 9/137 (6%)
Query: 209 QLQWLDLSDNQLS-GSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNN 267
++ L L + + + G + + L+FL L + L + + LP L++L LS N
Sbjct: 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS---VSNLPKLPKLKKLELSEN 81
Query: 268 MFYGEIPSDTANCSYLRILVLRFNNFSG-AIPKEISNLTKLEKLDLQYNRLQGTILY--- 323
+G + L L L N + + + L L+ LDL + Y
Sbjct: 82 RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRES 141
Query: 324 -VGHLLQLQWLDLSDNQ 339
L QL +LD D +
Sbjct: 142 VFKLLPQLTYLDGYDRE 158
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-06
Identities = 32/139 (23%), Positives = 54/139 (38%), Gaps = 9/139 (6%)
Query: 327 LLQLQWLDLSDNQLS-GSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLS 385
++ L L + + + G + L+FL L + L + LP L++L LS
Sbjct: 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS---VSNLPKLPKLKKLELS 79
Query: 386 NNMFYGEIPSDTQNCSYLRILVLKFNNFPG-AIPKEISNLTKLEKLDLQYNRLQGTIPYA 444
N +G + + L L L N + + + L L+ LDL + Y
Sbjct: 80 ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYR 139
Query: 445 GHLF----QLQWLDLSDNQ 459
+F QL +LD D +
Sbjct: 140 ESVFKLLPQLTYLDGYDRE 158
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 4e-12
Identities = 60/342 (17%), Positives = 104/342 (30%), Gaps = 57/342 (16%)
Query: 176 AIPKEISNLTKLEKLDLQYNKL--QGTIPYAGHL----YQLQWLDLSDNQLSGS-----L 224
+ + S + LDL N L T+ + L+LS N L +
Sbjct: 13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELV 72
Query: 225 PSFKFKMPLLQFLDLSSNRLSAE----LPTNVFHNLPFLEELYLSNNMFYGE-----IPS 275
+ L+LS N LS + L + + L L N F + +
Sbjct: 73 QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA 132
Query: 276 DTANCSYLRILVLRFNNFSGAIPKEISNL-----TKLEKLDLQYNRLQGT-ILYVGHLL- 328
+ + + L LR N+ E+ + + L+L+ N L + L
Sbjct: 133 FSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLA 192
Query: 329 ----QLQWLDLSDNQLSGS-----LPSFKFNMPLLQFLDLSSNRLS---VELPTNVFHNL 376
+ LDLS N L F + L+L N L +E + +L
Sbjct: 193 SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252
Query: 377 PFLEELYLSNNMFYGEIPSDTQ-------NCSYLRILVLKFNNFPGAIPKEISNL----- 424
L+ +YL ++ + N + ++ + ISNL
Sbjct: 253 KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELS 312
Query: 425 TKLEKLDLQYN------RLQGTIPYAGHLFQLQWLDLSDNQL 460
K + L + Q I +L+ + L
Sbjct: 313 GKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 7e-12
Identities = 50/332 (15%), Positives = 99/332 (29%), Gaps = 61/332 (18%)
Query: 234 LQFLDLSSNRLSAE----LPTNVFHNLPFLEELYLSNNMFYGEIPSD-----TANCSYLR 284
+ LDLS N L + L + + L LS N + + A + +
Sbjct: 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83
Query: 285 ILVLRFNNFSGAIPKEISNL-----TKLEKLDLQYNRLQGT-ILYVGHLLQ-----LQWL 333
L L N S E+ + LDL +N + L
Sbjct: 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143
Query: 334 DLSDNQ--------LSGSLPSFKFNMPLLQFLDLSSNRLSVE----LPTNVFHNLPFLEE 381
+L N L L + N + L+L N L+ + L + +
Sbjct: 144 NLRGNDLGIKSSDELIQILAAIPAN---VNSLNLRGNNLASKNCAELAKFLASIPASVTS 200
Query: 382 LYLSNNMFYGEIPSD-----TQNCSYLRILVLKFNNFPGAIPKEISNL----TKLEKLDL 432
L LS N+ + ++ + +++ L L N G + + L L+ + L
Sbjct: 201 LDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260
Query: 433 QYNRLQGTIPYA--------GHLFQLQWLDLSDNQ--------LSGSLPSFKFKMPLLQF 476
Y+ ++ ++ ++ +D + + +S + K +
Sbjct: 261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSL 320
Query: 477 LDLSSNRLST-ELPTNVFHNLPFLEELYLSNN 507
L+ + + L E +
Sbjct: 321 LNQCLIFAQKHQTNIEDLNIPDELRESIQTCK 352
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 6e-10
Identities = 63/353 (17%), Positives = 106/353 (30%), Gaps = 69/353 (19%)
Query: 41 LGNLSSLQTLDLSFNWFSGSIPASIF-----NMSSLLSINFINNALFGELPPNFCNHL-- 93
+ +LDLS N + +S+ S+N N+L + L
Sbjct: 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77
Query: 94 --SNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYG 151
+N+ SL L N K L K L ++ L L N F
Sbjct: 78 IPANVTSLNLSGNFLSYKSSDEL--VKTLAAIPFTI------------TVLDLGWNDFSS 123
Query: 152 EIPSDIA------NCSYLRILVLQFNNFSGAIPKEISNL-----TKLEKLDLQYNKLQ-- 198
+ S+ S + L L+ N+ E+ + + L+L+ N L
Sbjct: 124 KSSSEFKQAFSNLPAS-ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182
Query: 199 GTIPYAGHL----YQLQWLDLSDNQLSGS-----LPSFKFKMPLLQFLDLSSNRLS---A 246
A L + LDLS N L F + L+L N L
Sbjct: 183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242
Query: 247 ELPTNVFHNLPFLEELYLSNNMFYGEIPSDTA--------NCSYLRILVLRFNNFSGAIP 298
E + +L L+ +YL ++ + + N + ++ +
Sbjct: 243 ENLKLLKDSLKHLQTVYLDYDIV-KNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301
Query: 299 KEISNL-----TKLEKLDLQYN------RLQGTILYVGHLLQLQWLDLSDNQL 340
ISNL K + L + Q I + +L+ + L
Sbjct: 302 IPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 7e-08
Identities = 45/245 (18%), Positives = 81/245 (33%), Gaps = 44/245 (17%)
Query: 330 LQWLDLSDNQLSGS-----LPSFKFNMPLLQFLDLSSNRLSVE----LPTNVFHNLPFLE 380
+ LDLS N L + +F + L+LS N L + L + +
Sbjct: 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83
Query: 381 ELYLSNNMFYGE-----IPSDTQNCSYLRILVLKFNNFPGAIPKEISNL-----TKLEKL 430
L LS N + + + + +L L +N+F E + L
Sbjct: 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143
Query: 431 DLQYNRL--QGTIPYAGHL----FQLQWLDLSDNQ--------LSGSLPSFKFKMPLLQF 476
+L+ N L + + L + L+L N L+ L S +
Sbjct: 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS---VTS 200
Query: 477 LDLSSNRLSTE----LPTNVFHNLPFLEELYLSNNMFYGE----IPSDTPNCSYLRILVV 528
LDLS+N L + L + L L N +G + + +L+ + +
Sbjct: 201 LDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260
Query: 529 QFNNF 533
++
Sbjct: 261 DYDIV 265
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 7e-12
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 2/111 (1%)
Query: 398 QNCSYLRILVLKFNNFP-GAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLS 456
+ S ++ LVL + G + +LE L L +I L +L+ L+LS
Sbjct: 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIANLPKLNKLKKLELS 72
Query: 457 DNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
DN++SG L K P L L+LS N++ L L+ L L N
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 8e-12
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
Query: 159 NCSYLRILVLQFNNFS-GAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSD 217
S ++ LVL + + G + +LE L L +I L +L+ L+LSD
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIANLPKLNKLKKLELSD 73
Query: 218 NQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNN 267
N++SG L K P L L+LS N++ L L+ L L N
Sbjct: 74 NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 1e-11
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
Query: 279 NCSYLRILVLRFNNFS-GAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSD 337
S ++ LVL + + G + +LE L L +I + L +L+ L+LSD
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIANLPKLNKLKKLELSD 73
Query: 338 NQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNN 387
N++SG L P L L+LS N++ L L+ L L N
Sbjct: 74 NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-06
Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 9/132 (6%)
Query: 209 QLQWLDLSDNQLS-GSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNN 267
++ L L +++ + G L + L+FL + L++ L L++L LS+N
Sbjct: 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS---IANLPKLNKLKKLELSDN 74
Query: 268 MFYGEIPSDTANCSYLRILVLRFNNFSG-AIPKEISNLTKLEKLDLQYNRLQGTILY--- 323
G + C L L L N + + + L L+ LDL + Y
Sbjct: 75 RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYREN 134
Query: 324 -VGHLLQLQWLD 334
L QL +LD
Sbjct: 135 VFKLLPQLTYLD 146
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 9/132 (6%)
Query: 329 QLQWLDLSDNQLS-GSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNN 387
++ L L +++ + G L L+FL + L+ L L++L LS+N
Sbjct: 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS---IANLPKLNKLKKLELSDN 74
Query: 388 MFYGEIPSDTQNCSYLRILVLKFNNFPG-AIPKEISNLTKLEKLDLQYNRLQGTIPYAGH 446
G + + C L L L N + + + L L+ LDL + Y +
Sbjct: 75 RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYREN 134
Query: 447 LF----QLQWLD 454
+F QL +LD
Sbjct: 135 VFKLLPQLTYLD 146
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 64.4 bits (156), Expect = 2e-11
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 6/95 (6%)
Query: 416 AIPKEISNLTKLEKLDLQYNRLQGTIPYA--GHLFQLQWLDLSDNQLSGSLPSFKF-KMP 472
+ L +L ++ + + L +L+ L + + L + F P
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80
Query: 473 LLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
L L+LS N L + L L L+EL LS N
Sbjct: 81 RLSRLNLSFNALES-LSWKTVQGLS-LQELVLSGN 113
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 63.2 bits (153), Expect = 5e-11
Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 3/95 (3%)
Query: 152 EIPSDIANCSYLRILVLQFNNFSGAIPKE-ISNLTKLEKLDLQYNKLQGTIPYA-GHLYQ 209
+ + L L ++ + + L +L L + + L+ P A +
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81
Query: 210 LQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRL 244
L L+LS N L SL + LQ L LS N L
Sbjct: 82 LSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 59.8 bits (144), Expect = 7e-10
Identities = 26/125 (20%), Positives = 41/125 (32%), Gaps = 26/125 (20%)
Query: 361 SNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKE 420
+ +++ + L ELY+ N +
Sbjct: 16 TRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRD----------------------- 51
Query: 421 ISNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDL 479
+ L +L L + + L+ P A +L L+LS N L SL + LQ L L
Sbjct: 52 LRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVL 110
Query: 480 SSNRL 484
S N L
Sbjct: 111 SGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 3e-09
Identities = 24/133 (18%), Positives = 38/133 (28%), Gaps = 25/133 (18%)
Query: 208 YQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNN 267
+ L + + SL L L + + + L L L L + +
Sbjct: 8 HGSSGLRCTRDGALDSLHHLP-GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66
Query: 268 MFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHL 327
+ D F +L +L+L +N L+
Sbjct: 67 GL-RFVAPDA---------------FHF--------TPRLSRLNLSFNALESLSWKTVQG 102
Query: 328 LQLQWLDLSDNQL 340
L LQ L LS N L
Sbjct: 103 LSLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 57.4 bits (138), Expect = 4e-09
Identities = 23/132 (17%), Positives = 36/132 (27%), Gaps = 25/132 (18%)
Query: 329 QLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNM 388
L + + SL L L + + + L L L L + +
Sbjct: 9 GSSGLRCTRDGALDSLHHLP-GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67
Query: 389 FYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLF 448
+ D F +L +L+L +N L+
Sbjct: 68 L-RFVAPDA------------F-----------HFTPRLSRLNLSFNALESLSWKTVQGL 103
Query: 449 QLQWLDLSDNQL 460
LQ L LS N L
Sbjct: 104 SLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 56.3 bits (135), Expect = 9e-09
Identities = 22/99 (22%), Positives = 33/99 (33%), Gaps = 11/99 (11%)
Query: 272 EIPSDTANCSYLRILVLRFNNFSGAIPKE-ISNLTKLEKLDLQYNRLQGTILYV-----G 325
+ L L + + + L +L L + + L+ +V
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR----FVAPDAFH 77
Query: 326 HLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRL 364
+L L+LS N L SL LQ L LS N L
Sbjct: 78 FTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 4e-06
Identities = 14/88 (15%), Positives = 23/88 (26%), Gaps = 3/88 (3%)
Query: 448 FQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
L + + SL L L + + + L L L L + +
Sbjct: 8 HGSSGLRCTRDGALDSLHHLP-GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66
Query: 508 MFYGEIPSDT-PNCSYLRILVVQFNNFS 534
+ D L L + FN
Sbjct: 67 GL-RFVAPDAFHFTPRLSRLNLSFNALE 93
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 5e-05
Identities = 16/108 (14%), Positives = 31/108 (28%), Gaps = 4/108 (3%)
Query: 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIF-NMSSLLSINFINNALF 82
+ L + L +L L + + + L ++ + + L
Sbjct: 11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL- 68
Query: 83 GELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDF 130
+ P+ + L L L N + L+E LS N
Sbjct: 69 RFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 2e-04
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Query: 140 QQLYLSKNMFYGEIPS-DIANCSYLRILVLQFNNFSGAIPKEI-SNLTKLEKLDLQYNKL 197
+LY+ + D+ LR L + + + + +L +L+L +N L
Sbjct: 34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNAL 92
Query: 198 QGTIPYAGHLYQLQWLDLSDNQL 220
+ LQ L LS N L
Sbjct: 93 ESLSWKTVQGLSLQELVLSGNPL 115
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 9e-11
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 10/96 (10%)
Query: 176 AIPKEISNLTKLEKLDLQYNKLQGTIPYAG---HLYQLQWLDLSDNQLSGSLPSFKF-KM 231
++P I T ++L L N++ + G HL LQ L + N+L+ ++P+ F K+
Sbjct: 26 SVPAGIP--TDKQRLWLNNNQIT-KLE-PGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKL 80
Query: 232 PLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNN 267
L LDL+ N L + +P F NL L +YL NN
Sbjct: 81 TQLTQLDLNDNHLKS-IPRGAFDNLKSLTHIYLYNN 115
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 1e-10
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 10/96 (10%)
Query: 416 AIPKEISNLTKLEKLDLQYNRLQGTIPYAG---HLFQLQWLDLSDNQLSGSLPSFKF-KM 471
++P I T ++L L N++ + G HL LQ L + N+L+ ++P+ F K+
Sbjct: 26 SVPAGIP--TDKQRLWLNNNQIT-KLE-PGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKL 80
Query: 472 PLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
L LDL+ N L + +P F NL L +YL NN
Sbjct: 81 TQLTQLDLNDNHLKS-IPRGAFDNLKSLTHIYLYNN 115
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 5e-10
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 12/97 (12%)
Query: 296 AIPKEISNLTKLEKLDLQYNRLQGTILYVG---HLLQLQWLDLSDNQLSGSLPSFKF-NM 351
++P I T ++L L N++ L G HL+ LQ L + N+L+ ++P+ F +
Sbjct: 26 SVPAGIP--TDKQRLWLNNNQITK--LEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKL 80
Query: 352 PLLQFLDLSSNRL-SVELPTNVFHNLPFLEELYLSNN 387
L LDL+ N L S+ P F NL L +YL NN
Sbjct: 81 TQLTQLDLNDNHLKSI--PRGAFDNLKSLTHIYLYNN 115
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 2e-10
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Query: 176 AIPKEISNLTKLEKLDLQYNKLQGTIPYAG---HLYQLQWLDLSDNQLSGSLPSFKF-KM 231
++P I T + L L N++ + G L QL LDL +NQL+ LP+ F K+
Sbjct: 23 SVPTGI--PTTTQVLYLYDNQIT-KLE-PGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKL 77
Query: 232 PLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNN 267
L L L+ N+L + +P F NL L ++L NN
Sbjct: 78 TQLTQLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNN 112
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 3e-10
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 414 PGAIPKEISNLTKLEKLDLQYNRLQGTIPYAG---HLFQLQWLDLSDNQLSGSLPSFKF- 469
P IP T + L L N++ + G L QL LDL +NQL+ LP+ F
Sbjct: 25 PTGIP------TTTQVLYLYDNQIT-KLE-PGVFDRLTQLTRLDLDNNQLT-VLPAGVFD 75
Query: 470 KMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
K+ L L L+ N+L + +P F NL L ++L NN
Sbjct: 76 KLTQLTQLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNN 112
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 9e-10
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 12/97 (12%)
Query: 296 AIPKEISNLTKLEKLDLQYNRLQGTILYVG---HLLQLQWLDLSDNQLSGSLPSFKFN-M 351
++P I T + L L N++ L G L QL LDL +NQL+ LP+ F+ +
Sbjct: 23 SVPTGI--PTTTQVLYLYDNQITK--LEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKL 77
Query: 352 PLLQFLDLSSNRL-SVELPTNVFHNLPFLEELYLSNN 387
L L L+ N+L S+ P F NL L ++L NN
Sbjct: 78 TQLTQLSLNDNQLKSI--PRGAFDNLKSLTHIWLLNN 112
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 2e-08
Identities = 69/441 (15%), Positives = 136/441 (30%), Gaps = 121/441 (27%)
Query: 62 PASIF--NMSSLLSINFI---NNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSS 116
IF N+ + S + L ++ PN+ + + ++ L+ + ++ L S
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 117 CKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQ-----FN 171
K L L + + + W N F ++ +C +IL+ +
Sbjct: 241 -KPYENCLLVLLN-VQN--AKAW-------NAF------NL-SC---KILLTTRFKQVTD 279
Query: 172 NFSGAIPKEIS------NLTKLEKLDLQYNKL-----------QGTIPYA----GHLYQL 210
S A IS LT E L L T P +
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 211 ------QWLDLSDNQLSGSLPSF--KFKMPLLQ--FLDLSSNRLSAELPTNVFHNLPFLE 260
W ++ ++L+ + S + + F LS SA +PT + L
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL------LS 393
Query: 261 ELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIP-------KEISNLTKLEK--LD 311
++ ++ ++ ++ + + +IP ++ N L + +D
Sbjct: 394 LIW--FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 312 LQYNRLQGTILYVGHLLQLQWLD----------LSDNQLSGSLPSFKFNMPLLQFLDL-- 359
YN + + L +LD L + + + F ++ FLD
Sbjct: 452 -HYNIPKT---FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF----RMV-FLDFRF 502
Query: 360 --------SSNRLSVELPTNVFHNLPFLEELYLSNNM------------FYGEIPSDTQN 399
S+ + N L F + Y+ +N F +I +
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKP-YICDNDPKYERLVNAILDFLPKIEENLIC 561
Query: 400 CSYLRILVLKFNNFPGAIPKE 420
Y +L + AI +E
Sbjct: 562 SKYTDLLRIALMAEDEAIFEE 582
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 9e-07
Identities = 71/500 (14%), Positives = 150/500 (30%), Gaps = 127/500 (25%)
Query: 48 QTLDLSFNWFSGSIPASIFNMSSLLSINFIN--NALFGE---LPPNFCN---HLSNL-ES 98
+ L +++ + I + S+++ +I + L+ + + L ++
Sbjct: 85 EVLRINYKFLMSPI-KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143
Query: 99 LF-LKSNMF---HG-----KIPSTL--SSCKRLRETSLSLNDFFW---DHTKRNWQQLYL 144
L L+ G K + + C + FW + L +
Sbjct: 144 LLELRPAKNVLIDGVLGSGK--TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 145 SKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA 204
+ + Y P+ + + S I I ++ + E L +K PY
Sbjct: 202 LQKLLYQIDPNWTSRSDH-----------SSNIKLRIHSI-QAELRRLLKSK-----PYE 244
Query: 205 GHLYQLQWLDLSDNQLSGSLPSFKF--KMPLLQFLDLS-SNRLSAELPTNVF---HNLPF 258
L L L + Q + + +F K+ LL ++ LSA T++ H++
Sbjct: 245 NCL-----LVLLNVQNAKAWNAFNLSCKI-LLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 259 ----LEELYLSN-NMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQ 313
++ L L + ++P + + R+ I + I +
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL---------SIIAESIRDGL-------- 341
Query: 314 YNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSF--KFNMPLLQ--FLDLSSNRLSVELP 369
W ++ ++L+ + S + F LS S +P
Sbjct: 342 -ATWD------------NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 370 TNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIP-------KEIS 422
T + L ++ ++ ++ ++ + +IP ++
Sbjct: 389 TIL------LSLIW--FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 423 NLTKLEK--LDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLS 480
N L + +D YN + DL L S + L
Sbjct: 441 NEYALHRSIVD-HYNIPKT----------FDSDDLIPPYLDQYFYSH-----IGHHLKNI 484
Query: 481 SNRLSTELPTNVFHNLPFLE 500
+ L VF + FLE
Sbjct: 485 EHPERMTLFRMVFLDFRFLE 504
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 5e-08
Identities = 50/333 (15%), Positives = 84/333 (25%), Gaps = 82/333 (24%)
Query: 235 QFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFS 294
+ L L + N F E+ S LR L L +
Sbjct: 37 KLGKLGRQVLPPSELLDHLFFH-----YEFQNQRFSAEV------LSSLRQLNLAGVRMT 85
Query: 295 GAIPKEI-----SNLTKLEKLDLQYNRL--QGTILYVGHLLQLQWLDLSDNQLSGS---- 343
+ S L++++L +L G + L+ + L L N L
Sbjct: 86 PVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKD 145
Query: 344 -LPSFKFNMPLLQFLDLSSNRLSVE--------LPTNVFHNLPFLEELYLSNNMFYGEIP 394
+ + L LS+N L+ L N + L L +
Sbjct: 146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGN-----TSVTHLSLLHTGL----- 195
Query: 395 SDT----------QNCSYLRILVLKFNNFPGAIPKEISNL----TKLEKLDLQYNRLQ-- 438
D +N L+ L + +N ++ LE L L +N L
Sbjct: 196 GDEGLELLAAQLDRNRQ-LQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254
Query: 439 ------GTIPYAGHLFQLQWLDLSDNQLS---------------GSLPSFKFKMPLLQFL 477
A ++ +S + + L
Sbjct: 255 GRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLR 314
Query: 478 DLSSNRLSTELPTNVFHNL---PFLEELYLSNN 507
DL +R +T P L + L
Sbjct: 315 DLEDSRGATLNPWRKAQLLRVEGEVRALLEQLG 347
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 6e-08
Identities = 43/287 (14%), Positives = 70/287 (24%), Gaps = 71/287 (24%)
Query: 161 SYLRILVLQFNNFSGAIPKEI-----SNLTKLEKLDLQYNKL--QGTIPYAGHLYQLQWL 213
S LR L L + + S L++++L +L G + + L
Sbjct: 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKL 131
Query: 214 DLSDNQLSGS-----LPSFKFKMPLLQFLDLSSNRLSAE--------LPTNVFHNLPFLE 260
L N L + L LS+N L+A L N +
Sbjct: 132 GLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGN-----TSVT 186
Query: 261 ELYLSNNMFYGEIPSDT----------ANCSYLRILVLRFNNFSGAIPKEISNL----TK 306
L L + D N L+ L + +N ++
Sbjct: 187 HLSLLHTGL-----GDEGLELLAAQLDRNRQ-LQELNVAYNGAGDTAALALARAAREHPS 240
Query: 307 LEKLDLQYNRLQ--------GTILYVGHLLQLQWLDLSDNQLS---------------GS 343
LE L L +N L ++ +S
Sbjct: 241 LELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSW 300
Query: 344 LPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNL---PFLEELYLSNN 387
+ L DL +R + P L + L
Sbjct: 301 DRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLG 347
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 40/243 (16%), Positives = 72/243 (29%), Gaps = 41/243 (16%)
Query: 303 NLTKLEKLDLQY--NRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSF-----KFNMPLLQ 355
L E LD + Q L L+ L+L+ +++ + L
Sbjct: 45 VLPPSELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALD 104
Query: 356 FLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDT----------QNCSYLRI 405
++L+S +L + +L L N + +
Sbjct: 105 EVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL-----GPEACKDLRDLLLHDQCQITT 159
Query: 406 LVLKFNNF--PGA--IPKEISNLTKLEKLDLQYNRL--QGTIPYAGHLFQ---LQWLDLS 456
L L N G + + ++ T + L L + L +G A L + LQ L+++
Sbjct: 160 LRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA 219
Query: 457 DNQLSGS----LPSFKFKMPLLQFLDLSSNRLSTE------LPTNVFHNLPFLEELYLSN 506
N + L + P L+ L L N LS+E +
Sbjct: 220 YNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEG 279
Query: 507 NMF 509
Sbjct: 280 TAV 282
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 9e-08
Identities = 44/210 (20%), Positives = 70/210 (33%), Gaps = 35/210 (16%)
Query: 157 IANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLS 216
++ CS L+ L L+ S I ++ + L +L+L S
Sbjct: 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS-----------------GFS 156
Query: 217 DNQLSGSLPSFKFKMPLLQFLDLSSNRL--SAELPTNVFHNLPFLEELYLSNNMFYGEIP 274
+ L +L S L L+LS + V H + +L LS Y +
Sbjct: 157 EFALQ-TLLSS---CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG---YRKNL 209
Query: 275 SDTA------NCSYLRILVLRF-NNFSGAIPKEISNLTKLEKLDLQYNRL--QGTILYVG 325
+ C L L L +E L L+ L L T+L +G
Sbjct: 210 QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG 269
Query: 326 HLLQLQWLDLSDNQLSGSLPSFKFNMPLLQ 355
+ L+ L + G+L K +P LQ
Sbjct: 270 EIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 299
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 4e-07
Identities = 45/263 (17%), Positives = 82/263 (31%), Gaps = 34/263 (12%)
Query: 224 LPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSN-NMFYGEIPSDTANCSY 282
P ++ + R + P + ++ + LSN + + + CS
Sbjct: 60 HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSK 119
Query: 283 LRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRL--QGTILYVG-HLLQLQWLDLSDNQ 339
L+ L L S I ++ + L +L+L + + + +L L+LS
Sbjct: 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 179
Query: 340 L---SGSLPSFKFNMPLLQFLDLS--SNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIP 394
+ + L+LS L + + P L L LS+
Sbjct: 180 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD-------- 231
Query: 395 SDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRL--QGTIPYAGHLFQLQW 452
L+ + E L L+ L L T+ G + L+
Sbjct: 232 -----SVMLKNDCFQ----------EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT 276
Query: 453 LDLSDNQLSGSLPSFKFKMPLLQ 475
L + G+L K +P LQ
Sbjct: 277 LQVFGIVPDGTLQLLKEALPHLQ 299
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 1e-06
Identities = 47/213 (22%), Positives = 80/213 (37%), Gaps = 20/213 (9%)
Query: 308 EKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPL-LQFLDLSSNRLSV 366
+ LDL L + G LL + + P + P +Q +DLS++ + V
Sbjct: 50 QTLDLTGKNLHPDVT--GRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV 107
Query: 367 ELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVL----KFNNFPGAIPKEIS 422
+ L+ L L I + S L L L F+ A+ +S
Sbjct: 108 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE--FALQTLLS 165
Query: 423 NLTKLEKLDLQY------NRLQGTIPYAGHLFQLQWLDLSD--NQLS-GSLPSFKFKMPL 473
+ ++L++L+L + +Q + A + L+LS L L + + P
Sbjct: 166 SCSRLDELNLSWCFDFTEKHVQVAV--AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 223
Query: 474 LQFLDLSSNRLSTELPTNVFHNLPFLEELYLSN 506
L LDLS + + F L +L+ L LS
Sbjct: 224 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 48.4 bits (114), Expect = 4e-06
Identities = 27/156 (17%), Positives = 55/156 (35%), Gaps = 21/156 (13%)
Query: 370 TNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEI--SNLTKL 427
+ V +P L L + N L+ L + P ++ ++I S+L L
Sbjct: 165 SPVLDAMPLLNNLKIKGTNNLSIGKKPRPN---LKSLEIISGGLPDSVVEDILGSDLPNL 221
Query: 428 EKLDLQYNRLQ----------GTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPL---L 474
EKL L + L+WL + D + + + + L
Sbjct: 222 EKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQL 281
Query: 475 QFLDLSSNRLSTELPTNVFHNLPF---LEELYLSNN 507
+ +D+S+ L+ E + ++ L+ + + N
Sbjct: 282 ETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 48.0 bits (113), Expect = 4e-06
Identities = 27/156 (17%), Positives = 59/156 (37%), Gaps = 18/156 (11%)
Query: 204 AGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFH-NLPFLEEL 262
+ L + L+ + + +L K P L+ L++ S L + ++ +LP LE+L
Sbjct: 165 SPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKL 224
Query: 263 YL---SNNMFYGEIPSDTA------NCSYLRILVLRFNNFSGAIPKEISN---LTKLEKL 310
L + + + L+ L + + + L +LE +
Sbjct: 225 VLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETM 284
Query: 311 DLQYNRLQGT-----ILYVGHLLQLQWLDLSDNQLS 341
D+ L + +V + L+++++ N LS
Sbjct: 285 DISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 47.3 bits (111), Expect = 9e-06
Identities = 29/186 (15%), Positives = 70/186 (37%), Gaps = 22/186 (11%)
Query: 298 PKEISNLTKLEKLDLQYNRLQGTILYVGHLLQL--QWLDLSDNQLSGS--LPSFKFNMPL 353
++ ++ L D+ + + + + L + L++ ++ G+ L K P
Sbjct: 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPN 194
Query: 354 LQFLDLSSNRLSVELPTNVFH-NLPFLE--ELYLSNNMFYGEIPSD-------TQNCSYL 403
L+ L++ S L + ++ +LP LE LY+ + + + L
Sbjct: 195 LKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNL 254
Query: 404 RILVLKFNNFPGAIPKEISN---LTKLEKLDLQYNRLQGT-----IPYAGHLFQLQWLDL 455
+ L + + + L +LE +D+ L + + + L+++++
Sbjct: 255 KWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314
Query: 456 SDNQLS 461
N LS
Sbjct: 315 KYNYLS 320
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 46.5 bits (109), Expect = 1e-05
Identities = 34/243 (13%), Positives = 68/243 (27%), Gaps = 69/243 (28%)
Query: 88 NFCNHLSNLESLFLK---------SNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRN 138
++ E LF S + + L + L + +
Sbjct: 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKI-----------KG 181
Query: 139 WQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEI--SNLTKLEKLDLQYNK 196
L + K L+ L + ++ ++I S+L LEKL L
Sbjct: 182 TNNLSIGKK-----------PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVG- 229
Query: 197 LQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFH-- 254
+ D N +F P L++L + +
Sbjct: 230 -----------VEDYGFDGDMNVFRPLFSKDRF--PNLKWLGIVDAEEQNVVVEMFLESD 276
Query: 255 NLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQY 314
LP LE + +S + +D + + + + L+ ++++Y
Sbjct: 277 ILPQLETMDISAGVL-----TDEG---------------ARLLLDHVDKIKHLKFINMKY 316
Query: 315 NRL 317
N L
Sbjct: 317 NYL 319
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 46.1 bits (108), Expect = 2e-05
Identities = 31/192 (16%), Positives = 59/192 (30%), Gaps = 41/192 (21%)
Query: 250 TNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEI--SNLTKL 307
+ V +P L L + N L+ L + ++ ++I S+L L
Sbjct: 165 SPVLDAMPLLNNLKIKGTNNLSIGKKPRPN---LKSLEIISGGLPDSVVEDILGSDLPNL 221
Query: 308 EKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVE 367
EKL L + D N +F P L++L +
Sbjct: 222 EKLVLYVGV------------EDYGFDGDMNVFRPLFSKDRF--PNLKWLGIVDAEEQNV 267
Query: 368 LPTNVFH--NLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLT 425
+ LP LE + +S + +D + + +
Sbjct: 268 VVEMFLESDILPQLETMDISAGVL-----TDEG---------------ARLLLDHVDKIK 307
Query: 426 KLEKLDLQYNRL 437
L+ ++++YN L
Sbjct: 308 HLKFINMKYNYL 319
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 1e-04
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 474 LQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
L L+ N L T LP + LP L +L N
Sbjct: 33 TTELVLTGNNL-TALPPGLLDALPALRTAHLGAN 65
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 3e-04
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 234 LQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNN 267
L L+ N L+A LP + LP L +L N
Sbjct: 33 TTELVLTGNNLTA-LPPGLLDALPALRTAHLGAN 65
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 3e-04
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 354 LQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNN 387
L L+ N L+ LP + LP L +L N
Sbjct: 33 TTELVLTGNNLT-ALPPGLLDALPALRTAHLGAN 65
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 541 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.98 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.98 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.97 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.97 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.97 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.97 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.96 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.96 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.96 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.95 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.95 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.95 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.95 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.95 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.95 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.95 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.95 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.93 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.93 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.93 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.93 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.93 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.92 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.92 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.91 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.91 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.91 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.91 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.91 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.91 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.9 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.9 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.9 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.9 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.9 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.89 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.89 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.87 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.87 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.86 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.86 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.85 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.85 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.85 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.84 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.84 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.82 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.82 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.81 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.81 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.81 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.81 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.8 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.79 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.79 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.79 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.79 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.79 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.78 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.78 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.75 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.75 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.74 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.73 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.71 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.71 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.7 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.68 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.68 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.68 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.67 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.67 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.67 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.66 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.66 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.65 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.64 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.64 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.64 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.63 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.63 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.63 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.62 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.62 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.61 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.61 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.61 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.6 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.58 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.55 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.53 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.53 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.52 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.48 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.48 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.47 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.47 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.47 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.44 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.44 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.43 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.41 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.4 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.39 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.38 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.33 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.33 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.31 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.3 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.25 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.23 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.21 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.19 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.18 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.09 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.06 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.83 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.75 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.64 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.64 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.51 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.26 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.16 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.13 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.02 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.91 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 96.46 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 96.28 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 95.04 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 94.16 | |
| 2lz0_A | 100 | Uncharacterized protein; hypothetical leucine rich | 82.34 | |
| 2lz0_A | 100 | Uncharacterized protein; hypothetical leucine rich | 81.27 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-61 Score=509.56 Aligned_cols=535 Identities=35% Similarity=0.444 Sum_probs=401.7
Q ss_pred CCCCCCCccccceeeeCCCCCCeEEEEecCCcceee---eC-----------------------CcccCCCCCcEecccc
Q 036588 1 NWNTSSSVCNWTGITCDVRTYRVTALNISGLNLTVT---IP-----------------------SELGNLSSLQTLDLSF 54 (541)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~---~~-----------------------~~~~~l~~L~~L~l~~ 54 (541)
+|+.+.+||.|.|++|+ ..+|++|+++++.+.+. ++ +.|+++++|++|++++
T Consensus 32 ~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~ 109 (768)
T 3rgz_A 32 DWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109 (768)
T ss_dssp TCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCS
T ss_pred CCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCC
Confidence 69999999999999998 57999999999988775 33 5788889999999999
Q ss_pred cccCCccch--hhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCccCCcc---CCCCCCCcEEecCCCc
Q 036588 55 NWFSGSIPA--SIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPST---LSSCKRLRETSLSLND 129 (541)
Q Consensus 55 ~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~l~~L~~l~~~~~~ 129 (541)
|.+.+.+|. .+.++++|++|++++|.+.+..|..+...+++|++|++++|.+++..+.. +.++++|++++++++.
T Consensus 110 n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~ 189 (768)
T 3rgz_A 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK 189 (768)
T ss_dssp SEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE
T ss_pred CcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCc
Confidence 998877888 89999999999999998877777776455888888888888887666655 6777777777777775
Q ss_pred cc---cccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceeee-------
Q 036588 130 FF---WDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQG------- 199 (541)
Q Consensus 130 ~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~------- 199 (541)
+. ....+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+..++.+++|++|++++|.+.+
T Consensus 190 l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l 268 (768)
T 3rgz_A 190 ISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL 268 (768)
T ss_dssp EESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCC
T ss_pred ccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcccc
Confidence 54 223456666777766666655554 6666666666666666655555555555555555555554432
Q ss_pred ---------------ecc-CCCC-cCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEE
Q 036588 200 ---------------TIP-YAGH-LYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEEL 262 (541)
Q Consensus 200 ---------------~~~-~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 262 (541)
..+ .+.. +++|++|++++|.+.+..|..+..+++|++|++++|.+.+.++...+..+++|+.|
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L 348 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEE
T ss_pred CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEE
Confidence 222 2333 36777777777777666777777777888888888777666776666777788888
Q ss_pred EecCccccccCCCCCcCcc-cccEEEec--------------------------ccccCCCccccccccCCccEEEeeCC
Q 036588 263 YLSNNMFYGEIPSDTANCS-YLRILVLR--------------------------FNNFSGAIPKEISNLTKLEKLDLQYN 315 (541)
Q Consensus 263 ~l~~~~~~~~~~~~~~~~~-~L~~L~l~--------------------------~~~~~~~~~~~l~~l~~L~~L~l~~~ 315 (541)
++++|.+.+..|..+..++ +|++|+++ +|.+....+..+..+++|+.|++++|
T Consensus 349 ~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 428 (768)
T 3rgz_A 349 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428 (768)
T ss_dssp ECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS
T ss_pred eCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCC
Confidence 8877777655665555443 44444444 44444344555666667777777777
Q ss_pred ccccccc-cccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCC
Q 036588 316 RLQGTIL-YVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIP 394 (541)
Q Consensus 316 ~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 394 (541)
.+....+ .+..+++|+.|++++|.+...++..+..+++|+.|++++|.+++.++.. +..+++|+.|++++|++.+..+
T Consensus 429 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p 507 (768)
T 3rgz_A 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNNRLTGEIP 507 (768)
T ss_dssp EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCC
T ss_pred cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH-HhcCCCCCEEEccCCccCCcCC
Confidence 6654333 3666777777777777776666677777778888888887776544443 5578888888888888877777
Q ss_pred cCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCC-------------------------------
Q 036588 395 SDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY------------------------------- 443 (541)
Q Consensus 395 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~------------------------------- 443 (541)
..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|.
T Consensus 508 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (768)
T 3rgz_A 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTC
T ss_pred hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccc
Confidence 7888888888888888888777788888888888888888876533321
Q ss_pred ----------------------------------------CcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCc
Q 036588 444 ----------------------------------------AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNR 483 (541)
Q Consensus 444 ----------------------------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 483 (541)
+..+++|+.|++++|.+...+|..++.+++|+.|++++|.
T Consensus 588 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 667 (768)
T 3rgz_A 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667 (768)
T ss_dssp CSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSC
T ss_pred cccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCc
Confidence 2234678899999999998999999999999999999999
Q ss_pred cccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeecccccccCCCC
Q 036588 484 LSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPKE 540 (541)
Q Consensus 484 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~ 540 (541)
+.+.+| ..++.+++|+.|++++|++.+.+|+.+..+++|+.|++++|+++|.||+.
T Consensus 668 l~g~ip-~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 668 ISGSIP-DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CCSCCC-GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred cCCCCC-hHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 988888 67889999999999999999999999999999999999999999999964
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-52 Score=441.33 Aligned_cols=509 Identities=35% Similarity=0.438 Sum_probs=394.9
Q ss_pred CCCeEEEEecCCcceeeeCCcc-cCCCCCcEecccccccCCccchh---hh----------------------hcCCCcE
Q 036588 20 TYRVTALNISGLNLTVTIPSEL-GNLSSLQTLDLSFNWFSGSIPAS---IF----------------------NMSSLLS 73 (541)
Q Consensus 20 ~~~l~~L~l~~~~i~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~---~~----------------------~l~~L~~ 73 (541)
.++|++|++++|.+++..|..+ .++++|++|++++|.+++..|.. +. ++++|++
T Consensus 125 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~ 204 (768)
T 3rgz_A 125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEF 204 (768)
T ss_dssp CTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCE
T ss_pred CCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCE
Confidence 4567777777776665555544 66666666666666665444444 33 4555555
Q ss_pred EEeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCcccc---ccccCcceEEEecCcccc
Q 036588 74 INFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFW---DHTKRNWQQLYLSKNMFY 150 (541)
Q Consensus 74 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~ 150 (541)
|++++|.+.+..|. +.. +++|++|++++|.+.+..|..+.++++|++|+++++.+.. ...+++|++|++++|.+.
T Consensus 205 L~Ls~n~l~~~~~~-l~~-l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~ 282 (768)
T 3rgz_A 205 LDVSSNNFSTGIPF-LGD-CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFT 282 (768)
T ss_dssp EECCSSCCCSCCCB-CTT-CCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEE
T ss_pred EECcCCcCCCCCcc-ccc-CCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccC
Confidence 55555555444444 333 6666666666666665556666666666666666665541 114567777777777777
Q ss_pred ccCCccccCC-CCccEEEeccCcccccCCccccccCCCcEEEccCceeeeecc-C-CCCcCCCCEEECCCCcccCCCCcc
Q 036588 151 GEIPSDIANC-SYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIP-Y-AGHLYQLQWLDLSDNQLSGSLPSF 227 (541)
Q Consensus 151 ~~~~~~~~~~-~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~-~~~~~~L~~L~l~~~~~~~~~~~~ 227 (541)
+.+|..+... ++|++|++++|.+....|..++.+++|++|++++|.+.+..+ . +..+++|++|++++|.+.+..|..
T Consensus 283 ~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 362 (768)
T 3rgz_A 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362 (768)
T ss_dssp ESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT
T ss_pred CccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH
Confidence 6667666554 888888888888887788888888888888888888874444 3 678888888888888887677777
Q ss_pred cCCCC-CccEEeccCCcccCcCChhhhc-cCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccC
Q 036588 228 KFKMP-LLQFLDLSSNRLSAELPTNVFH-NLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLT 305 (541)
Q Consensus 228 ~~~~~-~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 305 (541)
+..++ +|++|++++|.+.+.++..... .+++|+.|++.+|.+.+..|..+..+++|++|++++|.+....+..+..++
T Consensus 363 l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 442 (768)
T 3rgz_A 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442 (768)
T ss_dssp HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCC
Confidence 77666 8888888888876655554422 267899999999999888899999999999999999999888888899999
Q ss_pred CccEEEeeCCccccccc-cccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEc
Q 036588 306 KLEKLDLQYNRLQGTIL-YVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYL 384 (541)
Q Consensus 306 ~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 384 (541)
+|+.|++++|.+....+ .+..+++|++|++++|.+...++..+..+++|+.|++++|.+++.++.. +..+++|+.|++
T Consensus 443 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L 521 (768)
T 3rgz_A 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKL 521 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEEC
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH-HhcCCCCCEEEC
Confidence 99999999999875444 4888999999999999998888888999999999999999998666654 558999999999
Q ss_pred cCcccccCCCcCCcCCccCCeEEcccCCCCCccch---------------------------------------------
Q 036588 385 SNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPK--------------------------------------------- 419 (541)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------------------------------------- 419 (541)
.+|++.+..+..+..+++|++|++++|.+....|.
T Consensus 522 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (768)
T 3rgz_A 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601 (768)
T ss_dssp CSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCG
T ss_pred CCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccc
Confidence 99999888888999999999999999876543332
Q ss_pred -------------------------hhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCCCCCccccCCCC
Q 036588 420 -------------------------EISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPL 473 (541)
Q Consensus 420 -------------------------~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 473 (541)
.+..+++|+.|++++|++.+.+|. ++.+++|+.|++++|.++..+|..++.+++
T Consensus 602 ~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~ 681 (768)
T 3rgz_A 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681 (768)
T ss_dssp GGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred hhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCC
Confidence 233467899999999999877765 889999999999999999999999999999
Q ss_pred ccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeecccc
Q 036588 474 LQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNF 533 (541)
Q Consensus 474 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 533 (541)
|+.|++++|++.+.+| ..+..+++|+.|++++|++.+.+|+. ..+.++....+.+|+-
T Consensus 682 L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~ 739 (768)
T 3rgz_A 682 LNILDLSSNKLDGRIP-QAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPG 739 (768)
T ss_dssp CCEEECCSSCCEECCC-GGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTE
T ss_pred CCEEECCCCcccCcCC-hHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCch
Confidence 9999999999998888 67899999999999999999999976 3345555666777753
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=424.36 Aligned_cols=513 Identities=25% Similarity=0.218 Sum_probs=360.1
Q ss_pred CCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEe
Q 036588 20 TYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESL 99 (541)
Q Consensus 20 ~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 99 (541)
.+++++|+++++.+++..+..|+++++|++|++++|.+++..|..+.++++|++|++++|.+ +.+|...+.++++|++|
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL-SQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC-CCCCTTTTTTCTTCSEE
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc-CccChhhhccCCCCCEE
Confidence 35899999999999988888899999999999999999988899999999999999999988 46776544459999999
Q ss_pred eccccccCccCCccCCCCCCCcEEecCCCccc-----cccccCcceEEEecCccccccCCcccc--CCCCccEEEeccCc
Q 036588 100 FLKSNMFHGKIPSTLSSCKRLRETSLSLNDFF-----WDHTKRNWQQLYLSKNMFYGEIPSDIA--NCSYLRILVLQFNN 172 (541)
Q Consensus 100 ~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~ 172 (541)
++++|.+....+..|+++++|++|+++++.+. .+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 99999998777788999999999999998765 334578899999999988776655543 55889999999888
Q ss_pred ccccCCcccccc---------------------------CCCcEEEccCceeeeeccC-CCCcC--CCCEEECCCCcccC
Q 036588 173 FSGAIPKEISNL---------------------------TKLEKLDLQYNKLQGTIPY-AGHLY--QLQWLDLSDNQLSG 222 (541)
Q Consensus 173 i~~~~~~~l~~l---------------------------~~L~~L~l~~~~~~~~~~~-~~~~~--~L~~L~l~~~~~~~ 222 (541)
+....+..+..+ ++|+.|+++++.+.+..+. +..++ +|+.|++++|.+..
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc
Confidence 876666655544 3456666666666554433 44443 38888888887776
Q ss_pred CCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCcccc---------ccCCCCCcCcccccEEEeccccc
Q 036588 223 SLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFY---------GEIPSDTANCSYLRILVLRFNNF 293 (541)
Q Consensus 223 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---------~~~~~~~~~~~~L~~L~l~~~~~ 293 (541)
..+..+..+++|++|++++|.+.+ .+...|..+++|+.|++.++... ......|..+++|++|++++|.+
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l 341 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQH-LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSE-ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCB
T ss_pred cCcccccCcccccEeeCCCCccCc-cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCcc
Confidence 666677778888888888887743 33344577777888877764322 11223566777788888888777
Q ss_pred CCCccccccccCCccEEEeeCCccccccc---ccc--ccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcC
Q 036588 294 SGAIPKEISNLTKLEKLDLQYNRLQGTIL---YVG--HLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVEL 368 (541)
Q Consensus 294 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 368 (541)
....+..+..+++|+.|++++|....... .+. ..++|+.+++++|.+....+..+..+++|+.|++++|.+++.+
T Consensus 342 ~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 421 (680)
T 1ziw_A 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEEC
T ss_pred CCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcccc
Confidence 76666667777788888887775321111 121 1246777777777776666666777777777777777776556
Q ss_pred ChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCC--CccchhhhccCCCcEEEccccccccccCC-Cc
Q 036588 369 PTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFP--GAIPKEISNLTKLEKLDLQYNRLQGTIPY-AG 445 (541)
Q Consensus 369 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~ 445 (541)
+...+..+++|+++++++|++.+..+..+..+++|++|++++|.+. ...+..+..+++|+.|++++|.+....+. +.
T Consensus 422 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 501 (680)
T 1ziw_A 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501 (680)
T ss_dssp CSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhc
Confidence 6566667777777777777766555566666667777777666554 24455666666677777766666654443 55
Q ss_pred ccCCcceEeccCCcCCCCC--------CccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCC
Q 036588 446 HLFQLQWLDLSDNQLSGSL--------PSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDT 517 (541)
Q Consensus 446 ~~~~L~~L~l~~~~~~~~~--------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 517 (541)
.+++|+.|++++|.+.... ...+..+++|++|++++|.+. .++...+..+++|+.|++++|.+....+..|
T Consensus 502 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 580 (680)
T 1ziw_A 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVF 580 (680)
T ss_dssp TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHh
Confidence 6666666666666655321 112455666666666666663 4555556666666666666666665555556
Q ss_pred CCccccceEEeecccccc
Q 036588 518 PNCSYLRILVVQFNNFSG 535 (541)
Q Consensus 518 ~~~~~L~~L~l~~~~~~~ 535 (541)
..+++|+.|++++|.+++
T Consensus 581 ~~l~~L~~L~L~~N~l~~ 598 (680)
T 1ziw_A 581 NNQVSLKSLNLQKNLITS 598 (680)
T ss_dssp TTCTTCCEEECTTSCCCB
T ss_pred CCCCCCCEEECCCCcCCc
Confidence 666666666666666654
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-50 Score=418.01 Aligned_cols=516 Identities=24% Similarity=0.210 Sum_probs=434.4
Q ss_pred CCCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcE
Q 036588 19 RTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLES 98 (541)
Q Consensus 19 ~~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 98 (541)
..++|++|+++++.+++..|++|+++++|++|++++|.++...+..|.++++|++|++++|.+.+..|..+.. +++|++
T Consensus 47 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~ 125 (680)
T 1ziw_A 47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK-QKNLIT 125 (680)
T ss_dssp GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTT-CTTCCE
T ss_pred CCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccc-cCCCCE
Confidence 3568999999999999988999999999999999999998444557999999999999999985433345555 999999
Q ss_pred eeccccccCccCCccCCCCCCCcEEecCCCccccc-------cccCcceEEEecCccccccCCccccCC-----------
Q 036588 99 LFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWD-------HTKRNWQQLYLSKNMFYGEIPSDIANC----------- 160 (541)
Q Consensus 99 L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~-------~~~~~L~~L~l~~~~~~~~~~~~~~~~----------- 160 (541)
|++++|.+....+..+.++++|++|+++++.+... ...++|+.|++++|.+.+..+..+..+
T Consensus 126 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~ 205 (680)
T 1ziw_A 126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 205 (680)
T ss_dssp EECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTC
T ss_pred EECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcccc
Confidence 99999999988889999999999999999876522 234799999999999988777666554
Q ss_pred ----------------CCccEEEeccCcccccCCccccccCC--CcEEEccCceeeeeccC-CCCcCCCCEEECCCCccc
Q 036588 161 ----------------SYLRILVLQFNNFSGAIPKEISNLTK--LEKLDLQYNKLQGTIPY-AGHLYQLQWLDLSDNQLS 221 (541)
Q Consensus 161 ----------------~~L~~L~l~~~~i~~~~~~~l~~l~~--L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~ 221 (541)
++|+.|+++++.+.+..+..+..++. |++|++++|.+....+. +..+++|++|++++|.+.
T Consensus 206 ~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 285 (680)
T 1ziw_A 206 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 285 (680)
T ss_dssp CCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBS
T ss_pred ccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccC
Confidence 45677788888887777788887755 99999999999877654 889999999999999998
Q ss_pred CCCCcccCCCCCccEEeccCCcccC--------cCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEeccccc
Q 036588 222 GSLPSFKFKMPLLQFLDLSSNRLSA--------ELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNF 293 (541)
Q Consensus 222 ~~~~~~~~~~~~L~~L~l~~~~~~~--------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 293 (541)
+..+..+..+++|++|+++++.... .+....|..+++|+.|++++|.+.+..+..|..+++|++|++++|.+
T Consensus 286 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~ 365 (680)
T 1ziw_A 286 HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365 (680)
T ss_dssp EECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBS
T ss_pred ccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCch
Confidence 8888889999999999999875432 22233568899999999999999988888999999999999999864
Q ss_pred CCC--ccccccc--cCCccEEEeeCCccccccc-cccccCCCcEEeccCccccCCC-CcccCCCCcceEEEcccCcCcCc
Q 036588 294 SGA--IPKEISN--LTKLEKLDLQYNRLQGTIL-YVGHLLQLQWLDLSDNQLSGSL-PSFKFNMPLLQFLDLSSNRLSVE 367 (541)
Q Consensus 294 ~~~--~~~~l~~--l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~ 367 (541)
... ....+.. .++|+.|++++|.+....+ .+..+++|+.|++++|.+...+ ...+..+++|++|++++|.+. .
T Consensus 366 ~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~ 444 (680)
T 1ziw_A 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL-Q 444 (680)
T ss_dssp CCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEE-E
T ss_pred hhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcc-e
Confidence 321 1122322 3689999999999886654 4888999999999999987544 467889999999999999986 5
Q ss_pred CChhhhcCCCCccEEEccCcccc--cCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccC---
Q 036588 368 LPTNVFHNLPFLEELYLSNNMFY--GEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIP--- 442 (541)
Q Consensus 368 ~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--- 442 (541)
+....+..+++|+.|++.+|.+. +..+..+..+++|++|++++|.+....+..+..+++|+.|++++|++.....
T Consensus 445 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 524 (680)
T 1ziw_A 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN 524 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTS
T ss_pred eChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhc
Confidence 66667778999999999999876 4567789999999999999999998888889999999999999999875421
Q ss_pred ------CCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCC
Q 036588 443 ------YAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSD 516 (541)
Q Consensus 443 ------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 516 (541)
.+..+++|+.|++++|.+....+..+..+++|+.|++++|.+. .++...+..+++|+.|++++|.+.+..+..
T Consensus 525 ~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 603 (680)
T 1ziw_A 525 PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQVSLKSLNLQKNLITSVEKKV 603 (680)
T ss_dssp TTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCCCBCCHHH
T ss_pred cCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCC-cCCHhHhCCCCCCCEEECCCCcCCccChhH
Confidence 2577899999999999999665567899999999999999995 577788899999999999999999776666
Q ss_pred CC-CccccceEEeecccccccC
Q 036588 517 TP-NCSYLRILVVQFNNFSGAI 537 (541)
Q Consensus 517 ~~-~~~~L~~L~l~~~~~~~~~ 537 (541)
+. .+++|+.|++++|++...-
T Consensus 604 ~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 604 FGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp HHHHHTTCSEEECTTCCCCBCC
T ss_pred hcccccccCEEEccCCCcccCC
Confidence 76 7899999999999887543
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-50 Score=417.75 Aligned_cols=509 Identities=22% Similarity=0.173 Sum_probs=389.4
Q ss_pred CCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEe
Q 036588 20 TYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESL 99 (541)
Q Consensus 20 ~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 99 (541)
...+++|+++++.+++..|.+|+++++|++|++++|.+.+..|.+|.++++|++|++++|.+.+..|..+.. +++|++|
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L 110 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG-PKALKHL 110 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS-CTTCCEE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcc-cccccEe
Confidence 347899999999999888889999999999999999998778889999999999999999886555666665 9999999
Q ss_pred eccccccCccCCccCCCCCCCcEEecCCCccccc-----cccCcceEEEecCccccccCCccccCCCCcc--EEEeccCc
Q 036588 100 FLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWD-----HTKRNWQQLYLSKNMFYGEIPSDIANCSYLR--ILVLQFNN 172 (541)
Q Consensus 100 ~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~--~L~l~~~~ 172 (541)
++++|.++...+..++++++|++|+++++.+... ..+++|+.|++++|.+.+..+..+..+++|+ .|++++|.
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred eccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc
Confidence 9999999877778889999999988887765422 2246677777777777666666666777776 66777776
Q ss_pred ccccCCccccccCCCcEEEccCceeeeeccCCCCcCC--CCEEECCCCc---ccCCCCcccCCCC--CccEEeccCCccc
Q 036588 173 FSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQ--LQWLDLSDNQ---LSGSLPSFKFKMP--LLQFLDLSSNRLS 245 (541)
Q Consensus 173 i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~--L~~L~l~~~~---~~~~~~~~~~~~~--~L~~L~l~~~~~~ 245 (541)
+....+..+.. ..|++|+++++.. ....+..+.+ ++.+.+.... .....+..+..+. +|+.++++++.+.
T Consensus 191 l~~~~~~~~~~-~~L~~L~l~~~~~--~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 191 IAGIEPGAFDS-AVFQSLNFGGTQN--LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp CCEECTTTTTT-CEEEEEECTTCSC--HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred cCccChhHhhh-ccccccccCCchh--HHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence 66544444333 5677777766541 1111111222 1222221111 0111112222222 6888999998874
Q ss_pred CcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccc--c
Q 036588 246 AELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTIL--Y 323 (541)
Q Consensus 246 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~ 323 (541)
.++...|..+++|+.|+++++.+. ..|..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+ .
T Consensus 268 -~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (606)
T 3t6q_A 268 -NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345 (606)
T ss_dssp -SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSST
T ss_pred -ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhh
Confidence 566666788899999999998887 677788889999999999998887767788889999999999987763332 2
Q ss_pred ccccCCCcEEeccCccccCCC--CcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCc-CCcCC
Q 036588 324 VGHLLQLQWLDLSDNQLSGSL--PSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPS-DTQNC 400 (541)
Q Consensus 324 ~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~ 400 (541)
+..+++|++|++++|.+.... +..+..+++|++|++++|.+. ......+..+++|+.|++.+|++.+..+. .+..+
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 424 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE-EECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTC
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC-cCCHHHhcCCccCCeEECCCCcCCCcccchhhhCc
Confidence 778899999999998877544 566788899999999999886 45555677889999999999988765443 48889
Q ss_pred ccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccc-c---CCCcccCCcceEeccCCcCCCCCCccccCCCCccE
Q 036588 401 SYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGT-I---PYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQF 476 (541)
Q Consensus 401 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 476 (541)
++|++|++++|.+....+..+..+++|++|++++|.+.+. . ..+..+++|+.|++++|.+....+..+..+++|++
T Consensus 425 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 504 (606)
T 3t6q_A 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504 (606)
T ss_dssp TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCE
Confidence 9999999999998887888888999999999999988652 1 23677899999999999988777888899999999
Q ss_pred eeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeecccccccC
Q 036588 477 LDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAI 537 (541)
Q Consensus 477 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 537 (541)
|++++|++.+..+ ..+..+++| .|++++|++.+..|+.+..+++|+.|++++|++....
T Consensus 505 L~Ls~N~l~~~~~-~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 505 VDLSHNRLTSSSI-EALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp EECCSSCCCGGGG-GGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred EECCCCccCcCCh-hHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 9999999866544 678888999 9999999999878888888999999999999887543
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-49 Score=407.62 Aligned_cols=505 Identities=20% Similarity=0.145 Sum_probs=374.9
Q ss_pred CCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEe
Q 036588 20 TYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESL 99 (541)
Q Consensus 20 ~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 99 (541)
..++++|+++++.+++..+.+|+++++|++|++++|.+++..|.+|.++++|++|++++|.+.+..|..+.. +++|++|
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L 109 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG-LTSLENL 109 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT-CTTCCEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCC-cccCCEE
Confidence 357899999999998887888999999999999999888667888889999999999999885555666665 9999999
Q ss_pred eccccccCccCCccCCCCCCCcEEecCCCccc------cccccCcceEEEecCccccccCCccccCCCCcc----EEEec
Q 036588 100 FLKSNMFHGKIPSTLSSCKRLRETSLSLNDFF------WDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLR----ILVLQ 169 (541)
Q Consensus 100 ~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~ 169 (541)
++++|.+....+..++++++|++|+++++.+. .+..+++|++|++++|.+.+..+..++.+++|+ .++++
T Consensus 110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred EccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence 99999888777778888888888777766543 123345555555555555555444444444333 55555
Q ss_pred cCcccccCCccccccCCCcEEEccCceeee--eccCCCCcCCCCEEECCCCcccC------CCCcccCCCC--CccEEec
Q 036588 170 FNNFSGAIPKEISNLTKLEKLDLQYNKLQG--TIPYAGHLYQLQWLDLSDNQLSG------SLPSFKFKMP--LLQFLDL 239 (541)
Q Consensus 170 ~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~--~L~~L~l 239 (541)
+|.+....+..+.. .+|++|++++|.+.+ ....+..++.++.+.+....+.. .....+..+. .++.+.+
T Consensus 190 ~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 268 (606)
T 3vq2_A 190 LNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268 (606)
T ss_dssp TCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEE
T ss_pred CCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheec
Confidence 55555333332222 255555555554431 11224445555554443222110 0111111111 2344444
Q ss_pred -cCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccc
Q 036588 240 -SSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQ 318 (541)
Q Consensus 240 -~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 318 (541)
..+.+.+..+. +..+++|+.|++.++.+. ..+ .+..+++|++|++++|.+. .++ .+ .+++|+.|++++|...
T Consensus 269 ~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~ 341 (606)
T 3vq2_A 269 TYTNDFSDDIVK--FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGS 341 (606)
T ss_dssp CCCTTCCGGGGS--CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESCSSC
T ss_pred cccccccccccc--cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccCc-ccc-cC-CCCccceeeccCCcCc
Confidence 33444444443 678899999999999886 344 7888999999999999984 555 45 8999999999999654
Q ss_pred cccccccccCCCcEEeccCccccCC--CCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCC-c
Q 036588 319 GTILYVGHLLQLQWLDLSDNQLSGS--LPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIP-S 395 (541)
Q Consensus 319 ~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~ 395 (541)
... .+..+++|++|++++|.+... .+..+..+++|++|++++|.++ .++ ..+..+++|+.|++.+|.+.+..+ .
T Consensus 342 ~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~ 418 (606)
T 3vq2_A 342 ISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMS-ANFMGLEELQHLDFQHSTLKRVTEFS 418 (606)
T ss_dssp EEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EEC-CCCTTCTTCCEEECTTSEEESTTTTT
T ss_pred cch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cch-hhccCCCCCCeeECCCCccCCccChh
Confidence 333 577899999999999988754 3677788999999999999886 444 556689999999999999987666 5
Q ss_pred CCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccc-cC-CCcccCCcceEeccCCcCCCCCCccccCCCC
Q 036588 396 DTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGT-IP-YAGHLFQLQWLDLSDNQLSGSLPSFKFKMPL 473 (541)
Q Consensus 396 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 473 (541)
.+..+++|++|++++|.+....+..+..+++|++|++++|.+.+. .+ .+..+++|+.|++++|.+....+..+..+++
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 498 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccccc
Confidence 788999999999999999888888899999999999999998862 34 4788999999999999998888888999999
Q ss_pred ccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCcc-ccceEEeecccccccCC
Q 036588 474 LQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCS-YLRILVVQFNNFSGAIP 538 (541)
Q Consensus 474 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~p 538 (541)
|++|++++|++.+..+ ..+..+++|+.|++++|++. .+|..+..++ +|+.|++++|++...-|
T Consensus 499 L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 499 LQLLNMSHNNLLFLDS-SHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CCEEECCSSCCSCEEG-GGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CCEEECCCCcCCCcCH-HHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 9999999999966545 67888999999999999998 6777788887 69999999999876433
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-47 Score=396.49 Aligned_cols=506 Identities=22% Similarity=0.207 Sum_probs=413.5
Q ss_pred EEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccc
Q 036588 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKS 103 (541)
Q Consensus 24 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 103 (541)
+.++.++.+++ .+|..+.. ++++|++++|.+++..|..|.++++|++|++++|.+.+..|..+.. +++|++|++++
T Consensus 15 ~~~~c~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~ 90 (606)
T 3t6q_A 15 KTYNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS-QHRLDTLVLTA 90 (606)
T ss_dssp TEEECTTSCCS-SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTT-CTTCCEEECTT
T ss_pred ceEECCCCCcc-cCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccC-ccccCeeeCCC
Confidence 35677777777 56766654 7899999999999777899999999999999999986656666666 99999999999
Q ss_pred cccCccCCccCCCCCCCcEEecCCCcccc-----ccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCC
Q 036588 104 NMFHGKIPSTLSSCKRLRETSLSLNDFFW-----DHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIP 178 (541)
Q Consensus 104 ~~~~~~~~~~~~~l~~L~~l~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 178 (541)
|.+....|..++++++|++|+++++.+.. +..+++|++|++++|.+.+.....+..+++|+.|++++|.+....+
T Consensus 91 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 170 (606)
T 3t6q_A 91 NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170 (606)
T ss_dssp CCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH
T ss_pred CcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh
Confidence 99998889999999999999999887653 3456789999999998887554455568899999999998887777
Q ss_pred ccccccCCCc--EEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCcc--EEeccCCcc--cCcCChhh
Q 036588 179 KEISNLTKLE--KLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQ--FLDLSSNRL--SAELPTNV 252 (541)
Q Consensus 179 ~~l~~l~~L~--~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~--~L~l~~~~~--~~~~~~~~ 252 (541)
..++.+++|+ .|++++|.+....+......+|+.|+++++.. .+..+..+.+++ .+.+....- ...+....
T Consensus 171 ~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~ 247 (606)
T 3t6q_A 171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247 (606)
T ss_dssp HHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGG
T ss_pred hhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchh---HHHHhhhccccchhheechhhccccccccChhH
Confidence 7788888888 88888888887777766667889999888752 222333333333 333322210 11333444
Q ss_pred hccCC--CCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccc-cccccCC
Q 036588 253 FHNLP--FLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTIL-YVGHLLQ 329 (541)
Q Consensus 253 ~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~ 329 (541)
|..+. +|+.+++.++.+....+..|..+++|++|++++|.+. .++..+..+++|++|++++|.+....+ .+..+++
T Consensus 248 ~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 326 (606)
T 3t6q_A 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS 326 (606)
T ss_dssp GGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTT
T ss_pred hchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCc
Confidence 55544 7899999999999888888999999999999999988 667778999999999999999886644 5889999
Q ss_pred CcEEeccCccccC-CCCcccCCCCcceEEEcccCcCcCcCC-hhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEE
Q 036588 330 LQWLDLSDNQLSG-SLPSFKFNMPLLQFLDLSSNRLSVELP-TNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILV 407 (541)
Q Consensus 330 L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 407 (541)
|++|++++|.+.. .....+..+++|++|++++|.++.... ...+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 327 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 406 (606)
T 3t6q_A 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406 (606)
T ss_dssp CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEE
T ss_pred CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEE
Confidence 9999999998764 344558899999999999999863321 34567899999999999999877888899999999999
Q ss_pred cccCCCCCccc-hhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCC---CCCccccCCCCccEeeCCCC
Q 036588 408 LKFNNFPGAIP-KEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSG---SLPSFKFKMPLLQFLDLSSN 482 (541)
Q Consensus 408 l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~ 482 (541)
+++|.+....+ ..+..+++|+.|++++|.+....+. +..+++|+.|++++|.+.. ..+..+..+++|++|++++|
T Consensus 407 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp CTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred CCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence 99998876544 4588999999999999999876555 7889999999999999875 23456889999999999999
Q ss_pred ccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeecccccccCCC
Q 036588 483 RLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPK 539 (541)
Q Consensus 483 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~ 539 (541)
.+.+..+ ..+..+++|+.|++++|++.+..|+.+..+++| .|++++|++++..|+
T Consensus 487 ~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~ 541 (606)
T 3t6q_A 487 DLSSIDQ-HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS 541 (606)
T ss_dssp CCCEECT-TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGG
T ss_pred ccCccCh-hhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHh
Confidence 9966444 778899999999999999999999999999999 999999999976664
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-47 Score=391.39 Aligned_cols=503 Identities=21% Similarity=0.170 Sum_probs=404.9
Q ss_pred EEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccc
Q 036588 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKS 103 (541)
Q Consensus 24 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 103 (541)
++++.++.+++ .+|..+. +++++|+++++.+++..+..|.++++|++|++++|.+.+..|..+.. +++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~-l~~L~~L~Ls~ 89 (606)
T 3vq2_A 14 ITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHG-LHHLSNLILTG 89 (606)
T ss_dssp TEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT-CTTCCEEECTT
T ss_pred CceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhc-hhhcCEeECCC
Confidence 46788888888 5666554 89999999999999777779999999999999999985544555555 99999999999
Q ss_pred cccCccCCccCCCCCCCcEEecCCCccc-----cccccCcceEEEecCccccc-cCCccccCCCCccEEEeccCcccccC
Q 036588 104 NMFHGKIPSTLSSCKRLRETSLSLNDFF-----WDHTKRNWQQLYLSKNMFYG-EIPSDIANCSYLRILVLQFNNFSGAI 177 (541)
Q Consensus 104 ~~~~~~~~~~~~~l~~L~~l~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~~~ 177 (541)
|.++...|..|+++++|++|+++++.+. .+..+++|++|++++|.+.+ .+|..+.++++|++|++++|.+....
T Consensus 90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence 9999888999999999999999988764 34556788888888888875 45778888888888888888888776
Q ss_pred CccccccCCCc----EEEccCceeeeeccCCCCcCCCCEEECCCCccc-CCCCcccCCCCCccEEeccCCcccC-----c
Q 036588 178 PKEISNLTKLE----KLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLS-GSLPSFKFKMPLLQFLDLSSNRLSA-----E 247 (541)
Q Consensus 178 ~~~l~~l~~L~----~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~-----~ 247 (541)
+..++.+++|+ +|++++|.+....+......+|+.|++++|.+. ...+..+..+++++.+.+....+.. .
T Consensus 170 ~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~ 249 (606)
T 3vq2_A 170 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249 (606)
T ss_dssp TTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred hhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccc
Confidence 77777766554 788888888777666545558888888888764 2355566777888777765433221 1
Q ss_pred CChhhhccCC--CCcEEEe-cCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccc
Q 036588 248 LPTNVFHNLP--FLEELYL-SNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYV 324 (541)
Q Consensus 248 ~~~~~~~~~~--~L~~L~l-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 324 (541)
.....+..+. .++.+.+ ..+.+.+..+. +..+++|+.|+++++.+.. .+ .+..+++|+.|++++|.+. ..+.+
T Consensus 250 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l~-~lp~~ 325 (606)
T 3vq2_A 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQLK-QFPTL 325 (606)
T ss_dssp CCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCCS-SCCCC
T ss_pred cChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccCc-ccccC
Confidence 2222333333 3555666 44556555555 8899999999999999864 44 7888999999999999984 44466
Q ss_pred cccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcC-ChhhhcCCCCccEEEccCcccccCCCcCCcCCccC
Q 036588 325 GHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVEL-PTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYL 403 (541)
Q Consensus 325 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 403 (541)
.+++|++|++++|...... .+..+++|+.|++++|.+++.. ....+..+++|++|++++|.+.. .+..+..+++|
T Consensus 326 -~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L 401 (606)
T 3vq2_A 326 -DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEEL 401 (606)
T ss_dssp -CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTC
T ss_pred -CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCC
Confidence 9999999999999654333 5668999999999999886332 13456689999999999999874 55788999999
Q ss_pred CeEEcccCCCCCccc-hhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCC-CCCccccCCCCccEeeCC
Q 036588 404 RILVLKFNNFPGAIP-KEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSG-SLPSFKFKMPLLQFLDLS 480 (541)
Q Consensus 404 ~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~ 480 (541)
++|++++|.+....+ ..+..+++|+.|++++|.+....+. +..+++|+.|++++|.+.. ..+..+..+++|++|+++
T Consensus 402 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls 481 (606)
T 3vq2_A 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS 481 (606)
T ss_dssp CEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred CeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECC
Confidence 999999999887666 6889999999999999999876655 7889999999999999886 478889999999999999
Q ss_pred CCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeecccccccCCCC
Q 036588 481 SNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPKE 540 (541)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~ 540 (541)
+|.+.+..+ ..+..+++|+.|++++|++.+..|..+..+++|+.|++++|++. .+|++
T Consensus 482 ~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~ 539 (606)
T 3vq2_A 482 KCQLEQISW-GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGI 539 (606)
T ss_dssp TSCCCEECT-TTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESC
T ss_pred CCcCCccCh-hhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHh
Confidence 999966444 77889999999999999999888999999999999999999987 77764
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-47 Score=393.15 Aligned_cols=476 Identities=20% Similarity=0.253 Sum_probs=331.5
Q ss_pred CCCCCCCcccc---ceeeeCCCCCCeEEEEecCCcceeeeCCcccCCCCCcEeccccccc------CC------ccchhh
Q 036588 1 NWNTSSSVCNW---TGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWF------SG------SIPASI 65 (541)
Q Consensus 1 ~~~~~~~~~~~---~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~------~~------~~~~~~ 65 (541)
+|+.+.++|.| .|++|+.+ .+|+.|+++++++++.+|.+|+++++|++|++++|.+ .+ .+|...
T Consensus 59 ~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~ 137 (636)
T 4eco_A 59 NWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137 (636)
T ss_dssp CCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH
T ss_pred CCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH
Confidence 59999999999 99999875 7999999999999999999999999999999999965 22 334433
Q ss_pred hhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeecc--------------------ccccCccCCccCCCCCCCcEEec
Q 036588 66 FNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLK--------------------SNMFHGKIPSTLSSCKRLRETSL 125 (541)
Q Consensus 66 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~--------------------~~~~~~~~~~~~~~l~~L~~l~~ 125 (541)
+..|+ +++..+.+.+..|..+...+..+..+++. .+.+++ +|..++++++|++
T Consensus 138 --~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~--- 210 (636)
T 4eco_A 138 --KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQ--- 210 (636)
T ss_dssp --HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCE---
T ss_pred --HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCE---
Confidence 45566 66776666555555555433333333333 344444 5566666666666
Q ss_pred CCCccccccccCcceEEEecCcccccc-----------------CCcccc--CCCCccEEEeccCcccccCCccccccCC
Q 036588 126 SLNDFFWDHTKRNWQQLYLSKNMFYGE-----------------IPSDIA--NCSYLRILVLQFNNFSGAIPKEISNLTK 186 (541)
Q Consensus 126 ~~~~~~~~~~~~~L~~L~l~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~~~i~~~~~~~l~~l~~ 186 (541)
|++++|.+.+. +|..+. .+++|++|++++|.+...+|..++++++
T Consensus 211 ----------------L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 274 (636)
T 4eco_A 211 ----------------FYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274 (636)
T ss_dssp ----------------EEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSS
T ss_pred ----------------EECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCC
Confidence 66666666653 788888 9999999999999988888989999999
Q ss_pred CcEEEccCce-eee--eccCCCCc------CCCCEEECCCCcccCCCCc--ccCCCCCccEEeccCCcccCcCChhhhcc
Q 036588 187 LEKLDLQYNK-LQG--TIPYAGHL------YQLQWLDLSDNQLSGSLPS--FKFKMPLLQFLDLSSNRLSAELPTNVFHN 255 (541)
Q Consensus 187 L~~L~l~~~~-~~~--~~~~~~~~------~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 255 (541)
|++|++++|. +++ .+..++.+ ++|+.|++++|.+. .+|. .+..+++|++|++++|.+.+.++ .+..
T Consensus 275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~ 351 (636)
T 4eco_A 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGS 351 (636)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEE
T ss_pred CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--hhCC
Confidence 9999999987 764 33334444 78888888888877 6666 67777777777777777655555 4466
Q ss_pred CCCCcEEEecCccccccCCCCCcCccc-ccEEEecccccCCCccccccccC--CccEEEeeCCccccccccccccCCCcE
Q 036588 256 LPFLEELYLSNNMFYGEIPSDTANCSY-LRILVLRFNNFSGAIPKEISNLT--KLEKLDLQYNRLQGTILYVGHLLQLQW 332 (541)
Q Consensus 256 ~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~~~~~L~~ 332 (541)
+++|+.|++++|.+. ..|..+..+++ |++|++++|.+. .++..+..++ +|+.|++++|.+..
T Consensus 352 l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~------------- 416 (636)
T 4eco_A 352 EIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGS------------- 416 (636)
T ss_dssp EEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTT-------------
T ss_pred CCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCC-------------
Confidence 667777777777666 55566666666 777777666665 4444443332 55555555555443
Q ss_pred EeccCccccCCCCcccC-------CCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcC------
Q 036588 333 LDLSDNQLSGSLPSFKF-------NMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQN------ 399 (541)
Q Consensus 333 L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------ 399 (541)
..+..+. .+++|+.|++++|.++ .++...+..+++|++|++++|.+.......+..
T Consensus 417 ----------~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~ 485 (636)
T 4eco_A 417 ----------VDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK 485 (636)
T ss_dssp ----------TTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECT
T ss_pred ----------cchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccccccc
Confidence 3333333 4567777777777776 566666666777777777777776222222332
Q ss_pred -CccCCeEEcccCCCCCccchhhh--ccCCCcEEEccccccccccCCCcccCCcceEec------cCCcCCCCCCccccC
Q 036588 400 -CSYLRILVLKFNNFPGAIPKEIS--NLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDL------SDNQLSGSLPSFKFK 470 (541)
Q Consensus 400 -~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l------~~~~~~~~~~~~~~~ 470 (541)
+++|++|++++|.+. ..+..+. .+++|+.|++++|++......+..+++|+.|++ ++|.+...+|..+..
T Consensus 486 ~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~ 564 (636)
T 4eco_A 486 NTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564 (636)
T ss_dssp TGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG
T ss_pred ccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhc
Confidence 237888888888777 4455554 778888888888887764444667788888888 456667788888889
Q ss_pred CCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCC--------CCccccceEEeeccccc
Q 036588 471 MPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDT--------PNCSYLRILVVQFNNFS 534 (541)
Q Consensus 471 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--------~~~~~L~~L~l~~~~~~ 534 (541)
+++|++|++++|.+ +.+|.. +. ++|+.|++++|++......++ ..+...+..++++|+..
T Consensus 565 l~~L~~L~Ls~N~l-~~ip~~-~~--~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L 632 (636)
T 4eco_A 565 CPSLTQLQIGSNDI-RKVNEK-IT--PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDAL 632 (636)
T ss_dssp CSSCCEEECCSSCC-CBCCSC-CC--TTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCGGG
T ss_pred CCCCCEEECCCCcC-CccCHh-Hh--CcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCccc
Confidence 99999999999999 778754 33 789999999998775433332 22333455677788765
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-45 Score=388.84 Aligned_cols=507 Identities=24% Similarity=0.182 Sum_probs=291.2
Q ss_pred cccceeeeCCCCCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCcc-chhhhhcCCCcEEEeecCccCCCCCh
Q 036588 9 CNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSI-PASIFNMSSLLSINFINNALFGELPP 87 (541)
Q Consensus 9 ~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~ 87 (541)
+.|..++. -.+++++|++++|.+++..+..|+++++|++|++++|.....+ |.+|.++++|++|++++|.+.+..|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 45677776 4678999999999999888899999999999999998554455 78899999999999999988665566
Q ss_pred hhhhhcCCCcEeeccccccCccCCcc--CCCCCCCcEEecCCCccc------cccccCcceEEEecCccccccCCccccC
Q 036588 88 NFCNHLSNLESLFLKSNMFHGKIPST--LSSCKRLRETSLSLNDFF------WDHTKRNWQQLYLSKNMFYGEIPSDIAN 159 (541)
Q Consensus 88 ~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~l~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 159 (541)
.+.. +++|++|++++|.+.+..+.. +.++++|++|++++|.+. .+..+++|+.|++++|.+.+..+..+..
T Consensus 92 ~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 92 AFQG-LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp SSCS-CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred HccC-CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 6666 999999999999888755554 888888888777666543 1233455555555555555555555544
Q ss_pred C--CCccEEEeccCcccccCCccccccCC------CcEEEccCceeeeeccC-C---CCcCCCCEEECCCCccc------
Q 036588 160 C--SYLRILVLQFNNFSGAIPKEISNLTK------LEKLDLQYNKLQGTIPY-A---GHLYQLQWLDLSDNQLS------ 221 (541)
Q Consensus 160 ~--~~L~~L~l~~~~i~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~-~---~~~~~L~~L~l~~~~~~------ 221 (541)
+ ++|+.|++++|.+....+..++.+.+ |+.|++++|.+....+. + .....++.+.+..+...
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence 4 55555555555555444444444333 55555555544322211 1 11234444444321111
Q ss_pred ---CCCCcccCC--CCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCC
Q 036588 222 ---GSLPSFKFK--MPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGA 296 (541)
Q Consensus 222 ---~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 296 (541)
......+.. .++|+.|++++|.+. ..+...|..+++|+.|++++|.+....+..|..+++|++|++++|.+...
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 329 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCCCC-EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC
T ss_pred ccCCCChhhhhccccCCccEEECCCCccc-ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc
Confidence 011111111 245555666555543 22333345555566666665555555555555555666666665555544
Q ss_pred ccccccccCCccEEEeeCCcccccccc-ccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcC
Q 036588 297 IPKEISNLTKLEKLDLQYNRLQGTILY-VGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHN 375 (541)
Q Consensus 297 ~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 375 (541)
.+..+..+++|+.|++++|.+...... +..+++|++|++++|.+... ..+++|+.+.+++|.++ .++. .
T Consensus 330 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~----~ 399 (844)
T 3j0a_A 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPK----I 399 (844)
T ss_dssp CSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCC----C
T ss_pred CHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-cccc----c
Confidence 455555555666666655555433332 45555566666655554421 12455555555555554 2322 2
Q ss_pred CCCccEEEccCcccccCCC-cCCcCCccCCeEEcccCCCCCccch-hhhccCCCcEEEcccccccccc------CCCccc
Q 036588 376 LPFLEELYLSNNMFYGEIP-SDTQNCSYLRILVLKFNNFPGAIPK-EISNLTKLEKLDLQYNRLQGTI------PYAGHL 447 (541)
Q Consensus 376 ~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~------~~~~~~ 447 (541)
..+++.+++++|.+.+... ..+..+++|++|++++|.+....+. .+..+++|+.|++++|.+.... ..+..+
T Consensus 400 ~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l 479 (844)
T 3j0a_A 400 NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479 (844)
T ss_dssp CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCB
T ss_pred ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCc
Confidence 3455556666555542211 1123556666666666665543222 2334566666666666554211 114455
Q ss_pred CCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEE
Q 036588 448 FQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILV 527 (541)
Q Consensus 448 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 527 (541)
++|+.|++++|.+....+..+..+++|++|++++|.+.+ ++...+. ++|+.|++++|.+.+..|+.+. +|+.|+
T Consensus 480 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~ 553 (844)
T 3j0a_A 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV-LSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLD 553 (844)
T ss_dssp CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS-CCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEE
T ss_pred ccccEEECCCCcccccChhHccchhhhheeECCCCCCCc-cChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEE
Confidence 666666666666665555556666666666666666633 3333333 5666666666666655554432 456666
Q ss_pred eecccccc
Q 036588 528 VQFNNFSG 535 (541)
Q Consensus 528 l~~~~~~~ 535 (541)
+.+|++..
T Consensus 554 l~~Np~~C 561 (844)
T 3j0a_A 554 ITHNKFIC 561 (844)
T ss_dssp EEEECCCC
T ss_pred ecCCCccc
Confidence 66666543
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-45 Score=377.01 Aligned_cols=492 Identities=20% Similarity=0.185 Sum_probs=372.0
Q ss_pred CCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEe
Q 036588 20 TYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESL 99 (541)
Q Consensus 20 ~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 99 (541)
.+++++|+++++.+++..+.+|+++++|++|++++|.+++..+..|.++++|++|++++|.+.+..|..+.. +++|++|
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L 105 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-LSSLQKL 105 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT-CTTCCEE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcC-ccccccc
Confidence 457899999999998877888999999999999999888666778888999999999998874433344444 8999999
Q ss_pred eccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccc-cCCccccCCCCccEEEeccCcccccCC
Q 036588 100 FLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYG-EIPSDIANCSYLRILVLQFNNFSGAIP 178 (541)
Q Consensus 100 ~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~~~~ 178 (541)
+++++.++...+..++++++|++ |++++|.+.. .+|..++++++|++|++++|.+....+
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~-------------------L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~ 166 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKE-------------------LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCE-------------------EECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECG
T ss_pred cccccccccCCCccccccccccE-------------------EecCCCccceecChhhhcccCCCCEEeCcCCccceecH
Confidence 99988888665556888888877 5555555554 257778888888999888888887767
Q ss_pred ccccccCCC----cEEEccCceeeeeccCCCCcCCCCEEECCCCcccC-CCCcccCCCCCccEEeccCCccc-----CcC
Q 036588 179 KEISNLTKL----EKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSG-SLPSFKFKMPLLQFLDLSSNRLS-----AEL 248 (541)
Q Consensus 179 ~~l~~l~~L----~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-----~~~ 248 (541)
..++.+++| +.+++++|.+....+......+|+.|+++++.... ..+..+..+++++...+....+. ..+
T Consensus 167 ~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 246 (570)
T 2z63_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246 (570)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEEC
T ss_pred HHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhc
Confidence 778888887 78888888887766654344478888887764321 22334445666665544332211 122
Q ss_pred ChhhhccCCC--CcEEEecCc-cccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCcccccccccc
Q 036588 249 PTNVFHNLPF--LEELYLSNN-MFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVG 325 (541)
Q Consensus 249 ~~~~~~~~~~--L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 325 (541)
+...+..+++ ++.+.+.++ .+.+..+..+..+++|+.|+++++.+. ..+..+..+ +|+.|++++|.+..... .
T Consensus 247 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~--~ 322 (570)
T 2z63_A 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPT--L 322 (570)
T ss_dssp CTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCB--C
T ss_pred chhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCc--c
Confidence 2333344433 455666665 566677788888899999999998877 466667777 99999999998773322 5
Q ss_pred ccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcC-ChhhhcCCCCccEEEccCcccccCCCcCCcCCccCC
Q 036588 326 HLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVEL-PTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLR 404 (541)
Q Consensus 326 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 404 (541)
.+++|+.+++.+|.+....+. ..+++|++|++++|.++... ....+..+++|++|++++|.+.+..+ .+..+++|+
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~ 399 (570)
T 2z63_A 323 KLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLE 399 (570)
T ss_dssp BCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCC
T ss_pred cccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCC
Confidence 778899999998887644433 67889999999998876322 13445688999999999998874433 388899999
Q ss_pred eEEcccCCCCCccc-hhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCC-CCCCccccCCCCccEeeCCC
Q 036588 405 ILVLKFNNFPGAIP-KEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLS-GSLPSFKFKMPLLQFLDLSS 481 (541)
Q Consensus 405 ~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~ 481 (541)
+|++++|.+....+ ..+..+++|+.|++++|.+....+. +..+++|+.|++++|.+. ..+|..+..+++|++|++++
T Consensus 400 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~ 479 (570)
T 2z63_A 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479 (570)
T ss_dssp EEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred EEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCC
Confidence 99999998876544 5678899999999999988766554 678899999999999886 35778888999999999999
Q ss_pred CccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeecccccccCCC
Q 036588 482 NRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPK 539 (541)
Q Consensus 482 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~ 539 (541)
|.+.+..+ ..+..+++|+.|++++|.+.+..++.+..+++|+.|++++|++.+..|.
T Consensus 480 n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 480 CQLEQLSP-TAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp SCCCEECT-TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CccccCCh-hhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99866444 6788899999999999999988788899999999999999999988774
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-44 Score=376.42 Aligned_cols=491 Identities=20% Similarity=0.256 Sum_probs=309.3
Q ss_pred CCCCCC-----Cc--ccc------------ceeeeCCCCCCeEEEEecCCcceeeeCCcccCCCCCcEecc-cccccCCc
Q 036588 1 NWNTSS-----SV--CNW------------TGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDL-SFNWFSGS 60 (541)
Q Consensus 1 ~~~~~~-----~~--~~~------------~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l-~~~~~~~~ 60 (541)
+|+.+. .+ |.| .|++|+. ..+|+.|+|+++++.+.+|..|+++++|++|+| ++|.+.+.
T Consensus 285 ~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~ 363 (876)
T 4ecn_A 285 NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363 (876)
T ss_dssp GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHT
T ss_pred CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcCchHHhccccceEeeeccccccccc
Confidence 587665 55 999 9999986 579999999999999999999999999999999 77766544
Q ss_pred cchhhhhc---------CCCcEE--------E------------eecCccCCCCChhhhhhcCCCcEeeccc--cccCcc
Q 036588 61 IPASIFNM---------SSLLSI--------N------------FINNALFGELPPNFCNHLSNLESLFLKS--NMFHGK 109 (541)
Q Consensus 61 ~~~~~~~l---------~~L~~L--------~------------l~~~~~~~~~~~~~~~~l~~L~~L~l~~--~~~~~~ 109 (541)
.|...... ..++.. . +..+.. ..+... .....++.+.+.. |.+++
T Consensus 364 ~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~--~~~i~~-~~~l~l~~l~l~~~~N~L~~- 439 (876)
T 4ecn_A 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE--MKPIKK-DSRISLKDTQIGNLTNRITF- 439 (876)
T ss_dssp TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTT--SCCCCC-CCCCCCCTTTTTCCSCEEEE-
T ss_pred ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcc--cccccc-ccccchhhceeccccCcccc-
Confidence 22110000 000000 0 000000 000000 0122333333332 45554
Q ss_pred CCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCcccc--CCCCccEEEeccCcccccCCccccccCCC
Q 036588 110 IPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIA--NCSYLRILVLQFNNFSGAIPKEISNLTKL 187 (541)
Q Consensus 110 ~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~l~~l~~L 187 (541)
+|..++++++|++|+++++.+......... +..+.+...+.+|..+. .+++|+.|++++|.+...+|..++++++|
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~--~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L 517 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDW--EDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPEL 517 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSC--SCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccc--cccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCC
Confidence 666777777777777777665431111000 00111333344666666 88888888888888777788888888888
Q ss_pred cEEEccCce-eee--eccCC-------CCcCCCCEEECCCCcccCCCCc--ccCCCCCccEEeccCCcccCcCChhhhcc
Q 036588 188 EKLDLQYNK-LQG--TIPYA-------GHLYQLQWLDLSDNQLSGSLPS--FKFKMPLLQFLDLSSNRLSAELPTNVFHN 255 (541)
Q Consensus 188 ~~L~l~~~~-~~~--~~~~~-------~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 255 (541)
+.|++++|. +++ .+..+ ..+++|+.|++++|.+. .+|. .+..+++|+.|++++|.+. .++ .|..
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~ 593 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGT 593 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCT
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcC
Confidence 888888886 654 22222 34457777877777776 5565 6677777777777777765 555 4566
Q ss_pred CCCCcEEEecCccccccCCCCCcCccc-ccEEEecccccCCCccccccccC--CccEEEeeCCccccccccccccCCCcE
Q 036588 256 LPFLEELYLSNNMFYGEIPSDTANCSY-LRILVLRFNNFSGAIPKEISNLT--KLEKLDLQYNRLQGTILYVGHLLQLQW 332 (541)
Q Consensus 256 ~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~~~~~L~~ 332 (541)
+++|+.|++++|.+. ..|..+..+++ |+.|++++|.+. .++..+..++ +|+.|++++|.+....+.+.
T Consensus 594 L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~------- 664 (876)
T 4ecn_A 594 NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS------- 664 (876)
T ss_dssp TSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS-------
T ss_pred CCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccch-------
Confidence 677777777777766 56666666666 777777777666 4444444443 36666666666543222111
Q ss_pred EeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcC-Cc-------CCccCC
Q 036588 333 LDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSD-TQ-------NCSYLR 404 (541)
Q Consensus 333 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~-------~~~~L~ 404 (541)
.......+++|+.|++++|.++ .++...+..+++|+.|++++|.+. .++.. +. ++++|+
T Consensus 665 -----------~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~ 731 (876)
T 4ecn_A 665 -----------CSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLT 731 (876)
T ss_dssp -----------SCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCC
T ss_pred -----------hhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCcc
Confidence 0000113346777777777766 566666666777777777777665 33322 22 234777
Q ss_pred eEEcccCCCCCccchhhh--ccCCCcEEEccccccccccCCCcccCCcceEeccC------CcCCCCCCccccCCCCccE
Q 036588 405 ILVLKFNNFPGAIPKEIS--NLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSD------NQLSGSLPSFKFKMPLLQF 476 (541)
Q Consensus 405 ~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~~~~~~~L~~ 476 (541)
+|++++|.+. ..+..+. .+++|+.|++++|.+.+....+..+++|+.|++++ |.+...+|..+..+++|+.
T Consensus 732 ~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~ 810 (876)
T 4ecn_A 732 TIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ 810 (876)
T ss_dssp EEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCE
T ss_pred EEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCE
Confidence 7888777777 4455554 67778888888877776444466777788887765 6667788888889999999
Q ss_pred eeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEee
Q 036588 477 LDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQ 529 (541)
Q Consensus 477 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 529 (541)
|++++|.+ +.+|.. +. ++|+.|++++|++....+..+.....+..+.+.
T Consensus 811 L~Ls~N~L-~~Ip~~-l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~ 859 (876)
T 4ecn_A 811 LQIGSNDI-RKVDEK-LT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLL 859 (876)
T ss_dssp EECCSSCC-CBCCSC-CC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEE
T ss_pred EECCCCCC-CccCHh-hc--CCCCEEECCCCCCCccChHHccccccchheeec
Confidence 99999998 778854 33 689999999999886655555544444444443
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-44 Score=363.50 Aligned_cols=473 Identities=21% Similarity=0.245 Sum_probs=293.5
Q ss_pred ccccceeeeCCC-----------CCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEe
Q 036588 8 VCNWTGITCDVR-----------TYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINF 76 (541)
Q Consensus 8 ~~~~~~~~~~~~-----------~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 76 (541)
.|.|.++ |+.+ .+++++|+++++.+++..+.+|+++++|++|++++|.+++..|.+|.++++|++|++
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 5888887 7543 247899999999998888888999999999999999888777788899999999999
Q ss_pred ecCccCCCCChhhhhhcCCCcEeeccccccCcc-CCccCCCCCCCcEEecCCCccccccccCcceEEEecCcc-ccccCC
Q 036588 77 INNALFGELPPNFCNHLSNLESLFLKSNMFHGK-IPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNM-FYGEIP 154 (541)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~ 154 (541)
++|.+. ..+...+.++++|++|++++|.++.. .+..++++++|++|+ +++|. +....+
T Consensus 82 s~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-------------------L~~n~~~~~~~~ 141 (549)
T 2z81_A 82 SDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR-------------------IGNVETFSEIRR 141 (549)
T ss_dssp TTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE-------------------EEESSSCCEECT
T ss_pred CCCccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEE-------------------CCCCccccccCH
Confidence 999884 45554334489999999999888753 456778888887754 44454 333333
Q ss_pred ccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeeeccC-CCCcCCCCEEECCCCcccCCC---CcccCC
Q 036588 155 SDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPY-AGHLYQLQWLDLSDNQLSGSL---PSFKFK 230 (541)
Q Consensus 155 ~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~---~~~~~~ 230 (541)
..+..+++|++|++++|.+....+..++.+++|++|+++++........ +..+++|++|++++|.+.+.. ......
T Consensus 142 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 221 (549)
T 2z81_A 142 IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEV 221 (549)
T ss_dssp TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCC
T ss_pred hhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhh
Confidence 5677788888888888887777777788888888888877765543333 345778888888888776431 122345
Q ss_pred CCCccEEeccCCcccCcCChh---hhccCCCCcEEEecCccccccC------CCCCcCcccccEEEecccccCCCc----
Q 036588 231 MPLLQFLDLSSNRLSAELPTN---VFHNLPFLEELYLSNNMFYGEI------PSDTANCSYLRILVLRFNNFSGAI---- 297 (541)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~~~~---- 297 (541)
+++|+.|+++++.+.+..+.. .+..+++|+.+++.+|.+.+.. ...+..+++++.+.+.++.+....
T Consensus 222 ~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~ 301 (549)
T 2z81_A 222 SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD 301 (549)
T ss_dssp CCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCC
T ss_pred hhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhccc
Confidence 678888888888765433322 2356678888888887765321 123455677777777776554221
Q ss_pred -cccccccCCccEEEeeCCccccccccc-cccCCCcEEeccCccccCCC---CcccCCCCcceEEEcccCcCcCcCCh--
Q 036588 298 -PKEISNLTKLEKLDLQYNRLQGTILYV-GHLLQLQWLDLSDNQLSGSL---PSFKFNMPLLQFLDLSSNRLSVELPT-- 370 (541)
Q Consensus 298 -~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~-- 370 (541)
.......++|+.+++++|.+......+ ..+++|++|++++|.+.... ...+..+++|+.|++++|.++ .++.
T Consensus 302 l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~ 380 (549)
T 2z81_A 302 LSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTG 380 (549)
T ss_dssp CCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC-CHHHHH
T ss_pred chhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccc-ccccch
Confidence 111233456777777777665433333 45667777777776655322 122445666666666666664 2221
Q ss_pred hhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCc
Q 036588 371 NVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQL 450 (541)
Q Consensus 371 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L 450 (541)
..+..+++|++|++++|++. .++..+..+++|++|++++|.+.... ..+ .++|+.|++++|++.+. .
T Consensus 381 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~-~~~--~~~L~~L~Ls~N~l~~~---~------ 447 (549)
T 2z81_A 381 EILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVK-TCI--PQTLEVLDVSNNNLDSF---S------ 447 (549)
T ss_dssp HHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCC-TTS--CTTCSEEECCSSCCSCC---C------
T ss_pred hhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccccc-chh--cCCceEEECCCCChhhh---c------
Confidence 33455666666666666654 44445555566666666666554221 111 13455555555544322 1
Q ss_pred ceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeec
Q 036588 451 QWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQF 530 (541)
Q Consensus 451 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 530 (541)
..+++|++|++++|++. .+|. ...+++|+.|++++|++.+..++.+..+++|+.|++++
T Consensus 448 ------------------~~l~~L~~L~Ls~N~l~-~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 506 (549)
T 2z81_A 448 ------------------LFLPRLQELYISRNKLK-TLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506 (549)
T ss_dssp ------------------CCCTTCCEEECCSSCCS-SCCC--GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred ------------------ccCChhcEEECCCCccC-cCCC--cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecC
Confidence 24445555555555542 3432 12345555555555555544444455555555555555
Q ss_pred cccccc
Q 036588 531 NNFSGA 536 (541)
Q Consensus 531 ~~~~~~ 536 (541)
|++.+.
T Consensus 507 N~~~~~ 512 (549)
T 2z81_A 507 NPWDCS 512 (549)
T ss_dssp SCBCCC
T ss_pred CCccCC
Confidence 555443
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-42 Score=365.50 Aligned_cols=500 Identities=22% Similarity=0.196 Sum_probs=412.0
Q ss_pred EEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccc
Q 036588 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKS 103 (541)
Q Consensus 24 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 103 (541)
++.+.++++++ .+|. -.+++++|++++|.+++..|..|.++++|++|++++|...+.++...+.++++|++|++++
T Consensus 7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 56777888888 4565 5689999999999999778999999999999999999666677444445599999999999
Q ss_pred cccCccCCccCCCCCCCcEEecCCCcccc-------ccccCcceEEEecCccccccCC-ccccCCCCccEEEeccCcccc
Q 036588 104 NMFHGKIPSTLSSCKRLRETSLSLNDFFW-------DHTKRNWQQLYLSKNMFYGEIP-SDIANCSYLRILVLQFNNFSG 175 (541)
Q Consensus 104 ~~~~~~~~~~~~~l~~L~~l~~~~~~~~~-------~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~ 175 (541)
|.+....|..|+++++|++|++++|.+.. +..+++|++|++++|.+.+..+ ..++++++|+.|++++|.+..
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 99998889999999999999999997752 5677899999999999987654 578999999999999999988
Q ss_pred cCCcccccc--CCCcEEEccCceeeeeccC-CCCcCC------CCEEECCCCcccCCCCcccCC---CCCccEEeccCCc
Q 036588 176 AIPKEISNL--TKLEKLDLQYNKLQGTIPY-AGHLYQ------LQWLDLSDNQLSGSLPSFKFK---MPLLQFLDLSSNR 243 (541)
Q Consensus 176 ~~~~~l~~l--~~L~~L~l~~~~~~~~~~~-~~~~~~------L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~l~~~~ 243 (541)
..+..+..+ ++|+.|++++|.+....+. +..+++ |+.|++++|.+....+..+.. ...++.+.+..+.
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 888888887 8999999999988764433 444444 999999999877665554433 3567888876332
Q ss_pred ccC--------cCChhhhccC--CCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEee
Q 036588 244 LSA--------ELPTNVFHNL--PFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQ 313 (541)
Q Consensus 244 ~~~--------~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 313 (541)
... ......|..+ ++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|+++
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 322 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC
Confidence 211 1222334443 689999999999988888999999999999999999987777889999999999999
Q ss_pred CCccccccc-cccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccC
Q 036588 314 YNRLQGTIL-YVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGE 392 (541)
Q Consensus 314 ~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 392 (541)
+|.+....+ .+..+++|++|++++|.+....+..+..+++|+.|++++|.++ .++ .+++|+.+.+.+|++. .
T Consensus 323 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~-----~~~~L~~L~l~~N~l~-~ 395 (844)
T 3j0a_A 323 YNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIH-----FIPSIPDIFLSGNKLV-T 395 (844)
T ss_dssp SCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC-CCS-----SCCSCSEEEEESCCCC-C
T ss_pred CCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC-ccc-----CCCCcchhccCCCCcc-c
Confidence 999876644 4889999999999999998777778889999999999999986 222 3889999999999986 3
Q ss_pred CCcCCcCCccCCeEEcccCCCCCccc-hhhhccCCCcEEEccccccccccCC--CcccCCcceEeccCCcCCC-----CC
Q 036588 393 IPSDTQNCSYLRILVLKFNNFPGAIP-KEISNLTKLEKLDLQYNRLQGTIPY--AGHLFQLQWLDLSDNQLSG-----SL 464 (541)
Q Consensus 393 ~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~-----~~ 464 (541)
++. ...+++.+++++|.+..... ..+..+++|+.|++++|++....+. +..+++|+.|++++|.+.. ..
T Consensus 396 l~~---~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~ 472 (844)
T 3j0a_A 396 LPK---INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC 472 (844)
T ss_dssp CCC---CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCC
T ss_pred ccc---cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccc
Confidence 332 25689999999999886432 3456899999999999998754433 5568999999999998863 34
Q ss_pred CccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeecccccccCCCC
Q 036588 465 PSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPKE 540 (541)
Q Consensus 465 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~ 540 (541)
+..+..+++|+.|++++|.+.+ ++...+..+++|+.|++++|.+.+..+..+. ++|+.|++++|.+++..|+.
T Consensus 473 ~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~ 545 (844)
T 3j0a_A 473 WDVFEGLSHLQVLYLNHNYLNS-LPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV 545 (844)
T ss_dssp SSCSSCBCCEECCCCCHHHHTT-CCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC
T ss_pred hhhhcCcccccEEECCCCcccc-cChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH
Confidence 4568889999999999999955 5557889999999999999999976666666 89999999999999888864
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-42 Score=355.19 Aligned_cols=482 Identities=24% Similarity=0.229 Sum_probs=385.8
Q ss_pred EEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeecccc
Q 036588 25 ALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSN 104 (541)
Q Consensus 25 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 104 (541)
+++-++.+++ .+|..+. +++++|++++|.+++..+.+|.++++|++|++++|.+.+ ++...+.++++|++|++++|
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp EEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTC
T ss_pred EEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc-cCcccccCchhCCEEeCcCC
Confidence 4555566666 4565443 579999999999997777889999999999999998854 44444444999999999999
Q ss_pred ccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccc-cCCccccc
Q 036588 105 MFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSG-AIPKEISN 183 (541)
Q Consensus 105 ~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~l~~ 183 (541)
+++...+..|+++++|++ |++++|.+....+..++.+++|++|++++|.+.. .+|..+++
T Consensus 87 ~l~~~~~~~~~~l~~L~~-------------------L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~ 147 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQK-------------------LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147 (570)
T ss_dssp CCCEECTTTTTTCTTCCE-------------------EECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGG
T ss_pred cCCccCHhhhcCcccccc-------------------ccccccccccCCCccccccccccEEecCCCccceecChhhhcc
Confidence 999878889999998888 5555666665555568999999999999999886 46889999
Q ss_pred cCCCcEEEccCceeeeeccC-CCCcCCC----CEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCC
Q 036588 184 LTKLEKLDLQYNKLQGTIPY-AGHLYQL----QWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPF 258 (541)
Q Consensus 184 l~~L~~L~l~~~~~~~~~~~-~~~~~~L----~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 258 (541)
+++|++|++++|.+....+. +..+++| +.+++++|.+....+..+... +|+.++++++..........+..++.
T Consensus 148 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~ 226 (570)
T 2z63_A 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAG 226 (570)
T ss_dssp CTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTT
T ss_pred cCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccc
Confidence 99999999999998876543 6777777 899999999886666666554 89999999885433333445567777
Q ss_pred CcEEEecCccc------cccCCCCCcCccc--ccEEEeccc-ccCCCccccccccCCccEEEeeCCccccccccccccCC
Q 036588 259 LEELYLSNNMF------YGEIPSDTANCSY--LRILVLRFN-NFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQ 329 (541)
Q Consensus 259 L~~L~l~~~~~------~~~~~~~~~~~~~--L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 329 (541)
++...+....+ .......+..+++ ++.+.+.++ .+....+..+..+++|+.|+++++.+......+..+ +
T Consensus 227 l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~ 305 (570)
T 2z63_A 227 LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-G 305 (570)
T ss_dssp CEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-C
T ss_pred cceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-C
Confidence 77766543221 1222333444443 556666666 555567778889999999999999988665557777 9
Q ss_pred CcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCC--CcCCcCCccCCeEE
Q 036588 330 LQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEI--PSDTQNCSYLRILV 407 (541)
Q Consensus 330 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~ 407 (541)
|++|++++|.+. .++. ..+++|+.|.+++|.+....+. ..+++|+.|++++|.+.... +..+..+++|++|+
T Consensus 306 L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ 379 (570)
T 2z63_A 306 WQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379 (570)
T ss_dssp CSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEE
T ss_pred ccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEE
Confidence 999999999987 3333 4689999999999987644444 57999999999999886443 45678899999999
Q ss_pred cccCCCCCccchhhhccCCCcEEEccccccccccC--CCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccc
Q 036588 408 LKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIP--YAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLS 485 (541)
Q Consensus 408 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 485 (541)
+++|.+....+. +..+++|+.|++++|.+....+ .+..+++|+.|++++|.+....+..+..+++|++|++++|.+.
T Consensus 380 l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 458 (570)
T 2z63_A 380 LSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458 (570)
T ss_dssp CCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCc
Confidence 999998865554 8899999999999999887655 3788999999999999998888888999999999999999986
Q ss_pred -cccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeecccccccCCC
Q 036588 486 -TELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPK 539 (541)
Q Consensus 486 -~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~ 539 (541)
+.++ ..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|+
T Consensus 459 ~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 512 (570)
T 2z63_A 459 ENFLP-DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512 (570)
T ss_dssp GGEEC-SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccch-hhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence 3566 6788999999999999999988899999999999999999999876554
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=338.65 Aligned_cols=457 Identities=20% Similarity=0.199 Sum_probs=312.3
Q ss_pred EEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeecccc
Q 036588 25 ALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSN 104 (541)
Q Consensus 25 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 104 (541)
+.+.++++++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+.+..|..+.. +++|++|++++|
T Consensus 9 ~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n 84 (549)
T 2z81_A 9 VCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYS-LGSLEHLDLSDN 84 (549)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTS
T ss_pred eEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccc-cccCCEEECCCC
Confidence 3788888888 4555553 78899999998888667778888888888888888875444444544 888888888888
Q ss_pred ccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCcccccc-CCccccCCCCccEEEeccCc-ccccCCcccc
Q 036588 105 MFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGE-IPSDIANCSYLRILVLQFNN-FSGAIPKEIS 182 (541)
Q Consensus 105 ~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~ 182 (541)
.+.+..+..++++++|++ |++++|.+.+. .+..+..+++|++|++++|. +....+..++
T Consensus 85 ~l~~~~~~~~~~l~~L~~-------------------L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 145 (549)
T 2z81_A 85 HLSSLSSSWFGPLSSLKY-------------------LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145 (549)
T ss_dssp CCCSCCHHHHTTCTTCCE-------------------EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT
T ss_pred ccCccCHHHhccCCCCcE-------------------EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhh
Confidence 877665556677776666 34444444432 34456666777777777665 2322224555
Q ss_pred ccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEE
Q 036588 183 NLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEEL 262 (541)
Q Consensus 183 ~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 262 (541)
.+++|++|++++|.+.+ ..+..+..+++|++|+++++.. ..++...+..+++|+.|
T Consensus 146 ~l~~L~~L~L~~n~l~~-----------------------~~~~~l~~l~~L~~L~l~~n~~-~~~~~~~~~~l~~L~~L 201 (549)
T 2z81_A 146 GLTSLNELEIKALSLRN-----------------------YQSQSLKSIRDIHHLTLHLSES-AFLLEIFADILSSVRYL 201 (549)
T ss_dssp TCCEEEEEEEEETTCCE-----------------------ECTTTTTTCSEEEEEEEECSBS-TTHHHHHHHSTTTBSEE
T ss_pred cccccCeeeccCCcccc-----------------------cChhhhhccccCceEecccCcc-cccchhhHhhcccccEE
Confidence 55666666665555543 3344444445555555555443 23333334455666666
Q ss_pred EecCccccccC---CCCCcCcccccEEEecccccCCCc----cccccccCCccEEEeeCCcccccc-------ccccccC
Q 036588 263 YLSNNMFYGEI---PSDTANCSYLRILVLRFNNFSGAI----PKEISNLTKLEKLDLQYNRLQGTI-------LYVGHLL 328 (541)
Q Consensus 263 ~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~-------~~~~~~~ 328 (541)
++++|.+.+.. ......+++|+.|+++++.+.... +..+..+++|+.+++++|.+.... ..+..++
T Consensus 202 ~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~ 281 (549)
T 2z81_A 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELG 281 (549)
T ss_dssp EEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCT
T ss_pred EccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhc
Confidence 66665554321 112234566667777666554322 223345667777777777654321 1245566
Q ss_pred CCcEEeccCccccCC-----CCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCC---CcCCcCC
Q 036588 329 QLQWLDLSDNQLSGS-----LPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEI---PSDTQNC 400 (541)
Q Consensus 329 ~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~ 400 (541)
+++.+.+.++.+... ....+...++|+.+++++|.+. .++...+..+++|+.|++++|.+.+.. +..+..+
T Consensus 282 ~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l 360 (549)
T 2z81_A 282 KVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360 (549)
T ss_dssp TCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSS
T ss_pred ccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhcc
Confidence 777777776654421 1112233578999999999986 788887778999999999999987543 2347789
Q ss_pred ccCCeEEcccCCCCCccc--hhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEee
Q 036588 401 SYLRILVLKFNNFPGAIP--KEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLD 478 (541)
Q Consensus 401 ~~L~~L~l~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 478 (541)
++|++|++++|++....+ ..+..+++|+.|++++|++......+..+++|+.|++++|.+.. ++..+ .++|++|+
T Consensus 361 ~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~ 437 (549)
T 2z81_A 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLD 437 (549)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEE
T ss_pred ccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCccc-ccchh--cCCceEEE
Confidence 999999999999986543 56889999999999999998655557888999999999999873 33332 36899999
Q ss_pred CCCCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeecccccccCCC
Q 036588 479 LSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPK 539 (541)
Q Consensus 479 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~ 539 (541)
+++|++.+ ++ ..+++|+.|++++|++. .+|. ...+++|+.|++++|++.+..|+
T Consensus 438 Ls~N~l~~-~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~ 491 (549)
T 2z81_A 438 VSNNNLDS-FS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDG 491 (549)
T ss_dssp CCSSCCSC-CC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCChhh-hc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHH
Confidence 99999955 32 57899999999999998 6665 56799999999999999977665
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-41 Score=338.87 Aligned_cols=451 Identities=19% Similarity=0.196 Sum_probs=283.0
Q ss_pred EEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccc
Q 036588 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKS 103 (541)
Q Consensus 24 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 103 (541)
+++++++++++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+.+..|..+.. +++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF-NQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT-CTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhc-ccCCCEEecCC
Confidence 57899999999 4666665 89999999999998677788999999999999999885544555655 99999999999
Q ss_pred cccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccc-cCCccccCCCCccEEEeccCcccccCCcccc
Q 036588 104 NMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYG-EIPSDIANCSYLRILVLQFNNFSGAIPKEIS 182 (541)
Q Consensus 104 ~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~ 182 (541)
|+++ .+|.. .+++|++ |++++|.+.+ .+|..++.+++|++|++++|.+.. ..+.
T Consensus 79 N~l~-~lp~~--~l~~L~~-------------------L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~ 133 (520)
T 2z7x_B 79 NKLV-KISCH--PTVNLKH-------------------LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVL 133 (520)
T ss_dssp SCCC-EEECC--CCCCCSE-------------------EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGG
T ss_pred Ccee-ecCcc--ccCCccE-------------------EeccCCccccccchhhhccCCcceEEEecCcccch---hhcc
Confidence 8887 34444 5666666 6666676665 356788999999999999988864 4566
Q ss_pred ccCCC--cEEEccCcee--eeecc-CCCCcC-CCCEEECCCCcccCCCC-cccCCCCCccEEeccCCc-------ccCcC
Q 036588 183 NLTKL--EKLDLQYNKL--QGTIP-YAGHLY-QLQWLDLSDNQLSGSLP-SFKFKMPLLQFLDLSSNR-------LSAEL 248 (541)
Q Consensus 183 ~l~~L--~~L~l~~~~~--~~~~~-~~~~~~-~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~-------~~~~~ 248 (541)
.+++| ++|++++|.+ ....+ .+..+. ....++++++.+.+..+ ..+..+++|+.+++++|. +.+.+
T Consensus 134 ~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 213 (520)
T 2z7x_B 134 PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL 213 (520)
T ss_dssp GGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH
T ss_pred ccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecch
Confidence 77777 8888888876 32222 233322 22345566666554333 345567777777777764 22222
Q ss_pred ChhhhccCCCCcEEEecCccccccCCCCCc---CcccccEEEecccccCCCccccc-----cccCCccEEEeeCCccccc
Q 036588 249 PTNVFHNLPFLEELYLSNNMFYGEIPSDTA---NCSYLRILVLRFNNFSGAIPKEI-----SNLTKLEKLDLQYNRLQGT 320 (541)
Q Consensus 249 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~ 320 (541)
+ .+..+++|+.|++.++.+.+.....+. ..++|++|++++|.+....+..+ ..+++|+.++++++.+ ..
T Consensus 214 ~--~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~ 290 (520)
T 2z7x_B 214 A--KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GF 290 (520)
T ss_dssp H--GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CS
T ss_pred h--hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ec
Confidence 2 345667777777766655432111110 12466666666666654455544 5566666666665554 11
Q ss_pred c-ccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcC
Q 036588 321 I-LYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQN 399 (541)
Q Consensus 321 ~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 399 (541)
. ..+... ...++|+.|++++|.+.. .. ....+++|++|++++|.+.+..+..+..
T Consensus 291 p~~~~~~~---------------------~~~~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 346 (520)
T 2z7x_B 291 PQSYIYEI---------------------FSNMNIKNFTVSGTRMVH-ML--CPSKISPFLHLDFSNNLLTDTVFENCGH 346 (520)
T ss_dssp CTHHHHHH---------------------HHTCCCSEEEEESSCCCC-CC--CCSSCCCCCEEECCSSCCCTTTTTTCCC
T ss_pred chhhhhcc---------------------cccCceeEEEcCCCcccc-cc--chhhCCcccEEEeECCccChhhhhhhcc
Confidence 1 011111 001334555555544431 11 1135566666666666666555566666
Q ss_pred CccCCeEEcccCCCCC--ccchhhhccCCCcEEEccccccccccC-C-CcccCCcceEeccCCcCCCCCCccccCCCCcc
Q 036588 400 CSYLRILVLKFNNFPG--AIPKEISNLTKLEKLDLQYNRLQGTIP-Y-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQ 475 (541)
Q Consensus 400 ~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~-~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 475 (541)
+++|++|++++|++.. ..+..+..+++|+.|++++|.+....+ . +..+++|+.|++++|.+....+..+. ++|+
T Consensus 347 l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~ 424 (520)
T 2z7x_B 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIK 424 (520)
T ss_dssp CSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCC
T ss_pred CCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCC
Confidence 6777777777776664 233556667777777777777665233 2 45567777777777766544443332 5777
Q ss_pred EeeCCCCccccccCcccccCCcccceeeeccceecccCCC-CCCCccccceEEeecccccc
Q 036588 476 FLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPS-DTPNCSYLRILVVQFNNFSG 535 (541)
Q Consensus 476 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 535 (541)
+|++++|.+. .+|... ..+++|+.|++++|++. .+|. .+..+++|+.|++++|++.+
T Consensus 425 ~L~Ls~N~l~-~ip~~~-~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 425 VLDLHSNKIK-SIPKQV-VKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp EEECCSSCCC-CCCGGG-GGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EEECCCCccc-ccchhh-hcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcc
Confidence 7777777773 566333 36777777777777777 3444 37777777777777777764
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=340.68 Aligned_cols=453 Identities=19% Similarity=0.214 Sum_probs=315.9
Q ss_pred CCCcEecccccccCCccchhhhhcCCCcEEEeecCcc------CC------CCChhhhhhcCCCcEeeccccccCccCCc
Q 036588 45 SSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNAL------FG------ELPPNFCNHLSNLESLFLKSNMFHGKIPS 112 (541)
Q Consensus 45 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~------~~------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 112 (541)
.+++.|+|+++.+.+.+|.+++++++|++|++++|.+ .+ .+|... +..|+ ++++.+.+....+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRE 156 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchh
Confidence 5789999999999999999999999999999999965 22 445444 45666 77777777665555
Q ss_pred cCCCC-CCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEE
Q 036588 113 TLSSC-KRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLD 191 (541)
Q Consensus 113 ~~~~l-~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~ 191 (541)
.+..+ .++..+++...++.. .....++.+.+. ...|.+.. +|..++++++|++|+
T Consensus 157 ~~~~~~~~l~~~~l~~~~~~~-~~~~~l~~l~l~----------------------~~~n~l~~-ip~~l~~l~~L~~L~ 212 (636)
T 4eco_A 157 DFSDLIKDCINSDPQQKSIKK-SSRITLKDTQIG----------------------QLSNNITF-VSKAVMRLTKLRQFY 212 (636)
T ss_dssp GSCHHHHHHHHHCTTSCCCCC-CCCCCCCTTTTT----------------------CCSCEEEE-ECGGGGGCTTCCEEE
T ss_pred hHHHHHHHHhhcCcccccccc-ccccchhhhhhc----------------------cccCCCcc-CCHHHhcccCCCEEE
Confidence 55421 111111111110000 000001111110 01223333 444444555555555
Q ss_pred ccCceeee------------------eccCCC--CcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCc-ccC-cCC
Q 036588 192 LQYNKLQG------------------TIPYAG--HLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNR-LSA-ELP 249 (541)
Q Consensus 192 l~~~~~~~------------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~ 249 (541)
+++|.+.+ .+..++ .+++|++|++++|.+.+.+|..+..+++|++|++++|. +.+ .+|
T Consensus 213 Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp 292 (636)
T 4eco_A 213 MGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK 292 (636)
T ss_dssp EESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHH
T ss_pred CcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccch
Confidence 55554444 334455 66666666666666666666667777777777777776 544 444
Q ss_pred hhhh-----ccCCCCcEEEecCccccccCCC--CCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccc
Q 036588 250 TNVF-----HNLPFLEELYLSNNMFYGEIPS--DTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTIL 322 (541)
Q Consensus 250 ~~~~-----~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 322 (541)
..+. ..+++|+.|++++|.+. ..|. .+..+++|++|++++|.+...++ .+..+++|+.|++++|.+.....
T Consensus 293 ~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~ 370 (636)
T 4eco_A 293 DDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPA 370 (636)
T ss_dssp HHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCT
T ss_pred HHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccH
Confidence 4331 12377788888777776 6666 67777788888888877764555 67777888888888887775545
Q ss_pred cccccCC-CcEEeccCccccCCCCcccCCC--CcceEEEcccCcCcCcCChhhhc-------CCCCccEEEccCcccccC
Q 036588 323 YVGHLLQ-LQWLDLSDNQLSGSLPSFKFNM--PLLQFLDLSSNRLSVELPTNVFH-------NLPFLEELYLSNNMFYGE 392 (541)
Q Consensus 323 ~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~ 392 (541)
.+..+++ |++|++++|.+. .++..+... ++|+.|++++|.+++..+.. +. .+++|+.|++++|.+...
T Consensus 371 ~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N~l~~l 448 (636)
T 4eco_A 371 NFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN-FDPLDPTPFKGINVSSINLSNNQISKF 448 (636)
T ss_dssp TSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCS-SCTTCSSCCCCCCEEEEECCSSCCCSC
T ss_pred hhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhh-hcccccccccCCCCCEEECcCCccCcC
Confidence 5777777 888888888877 555555554 48999999999987544432 32 567999999999999844
Q ss_pred CCcCCcCCccCCeEEcccCCCCCccchhhhcc-------CCCcEEEccccccccccCCCc--ccCCcceEeccCCcCCCC
Q 036588 393 IPSDTQNCSYLRILVLKFNNFPGAIPKEISNL-------TKLEKLDLQYNRLQGTIPYAG--HLFQLQWLDLSDNQLSGS 463 (541)
Q Consensus 393 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-------~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~ 463 (541)
....+..+++|++|++++|.+.......+... ++|+.|++++|.+......+. .+++|+.|++++|.+..
T Consensus 449 p~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~- 527 (636)
T 4eco_A 449 PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK- 527 (636)
T ss_dssp CTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-
T ss_pred CHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-
Confidence 44446679999999999999985544444433 399999999999985544455 89999999999999996
Q ss_pred CCccccCCCCccEeeCC------CCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeeccccc
Q 036588 464 LPSFKFKMPLLQFLDLS------SNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFS 534 (541)
Q Consensus 464 ~~~~~~~~~~L~~L~l~------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 534 (541)
+|..+..+++|++|+++ +|.+.+.+| ..+..+++|+.|++++|.+. .+|..+. ++|+.|++++|++.
T Consensus 528 ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 528 FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP-EGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC-TTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTC
T ss_pred cChhhhcCCCCCEEECCCCcccccCcccccCh-HHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCc
Confidence 88888999999999994 567767777 66788999999999999995 7787766 89999999999876
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=329.63 Aligned_cols=436 Identities=19% Similarity=0.155 Sum_probs=314.4
Q ss_pred CCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEe
Q 036588 20 TYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESL 99 (541)
Q Consensus 20 ~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 99 (541)
.+++++|+++++.+++..+.+|+++++|++|++++|.+++..|..|.++++|++|++++|.+. .+|.. .+++|++|
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L 95 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHL 95 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEE
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEE
Confidence 369999999999999888889999999999999999999777999999999999999999984 67766 49999999
Q ss_pred eccccccCc-cCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCc--cEEEeccCcc--c
Q 036588 100 FLKSNMFHG-KIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYL--RILVLQFNNF--S 174 (541)
Q Consensus 100 ~l~~~~~~~-~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~i--~ 174 (541)
++++|.++. ..|..++++++|++|+++++. +.+ ..+..+++| +.|++++|.+ .
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-------------------l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTH-------------------LEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-------------------CCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred eccCCccccccchhhhccCCcceEEEecCcc-------------------cch---hhccccccceeeEEEeeccccccc
Confidence 999999986 467899999999996655544 332 234555555 7777777766 4
Q ss_pred ccCCccccccC-CCcEEEccCceeeeeccC--CCCcCCCCEEECCCCc-------ccCCCCcccCCCCCccEEeccCCcc
Q 036588 175 GAIPKEISNLT-KLEKLDLQYNKLQGTIPY--AGHLYQLQWLDLSDNQ-------LSGSLPSFKFKMPLLQFLDLSSNRL 244 (541)
Q Consensus 175 ~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~L~~L~l~~~~~ 244 (541)
...|..+..+. ....+++.++.+.+.... +..+++|+.+++++|. +.+..+ .+..+++|+.|+++++.+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 45555555543 223345555554433322 4567777777777664 332232 466778888888888776
Q ss_pred cCcCChhhhc--cCCCCcEEEecCccccccCCCCC-----cCcccccEEEecccccCCCcccccccc---CCccEEEeeC
Q 036588 245 SAELPTNVFH--NLPFLEELYLSNNMFYGEIPSDT-----ANCSYLRILVLRFNNFSGAIPKEISNL---TKLEKLDLQY 314 (541)
Q Consensus 245 ~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~l~~l---~~L~~L~l~~ 314 (541)
.+........ ..++|+.|++++|.+.+..|..+ ..+++|+.++++++.+ ......+..+ .+|+.|++++
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~ 311 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSG 311 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEES
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCC
Confidence 4332222211 24689999999999887788887 8899999999999887 2222334443 6799999999
Q ss_pred CccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCCh--hhhcCCCCccEEEccCcccccC
Q 036588 315 NRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPT--NVFHNLPFLEELYLSNNMFYGE 392 (541)
Q Consensus 315 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~ 392 (541)
|.+.... ....+++|++|++++|.+....+..+..+++|++|++++|.++ .++. ..+..+++|++|++++|.+.+.
T Consensus 312 n~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 389 (520)
T 2z7x_B 312 TRMVHML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYD 389 (520)
T ss_dssp SCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCC-BHHHHHHHHTTCTTCCEEECCSSCCBCC
T ss_pred Ccccccc-chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccC-ccccchHHHhhCCCCCEEECCCCcCCcc
Confidence 9875432 2367888999999999888767777888889999999988886 3222 3466788888888888887753
Q ss_pred CCc-CCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCC
Q 036588 393 IPS-DTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKM 471 (541)
Q Consensus 393 ~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 471 (541)
++. .+..+++|++|++++|.+++..+..+. ++|+.|++++|++......+..+++|+.|++++|.+....+..+..+
T Consensus 390 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l 467 (520)
T 2z7x_B 390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRL 467 (520)
T ss_dssp GGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccC
Confidence 443 367778888888888877655444443 67777777777776444445567777777777777764333346667
Q ss_pred CCccEeeCCCCccccc
Q 036588 472 PLLQFLDLSSNRLSTE 487 (541)
Q Consensus 472 ~~L~~L~l~~~~~~~~ 487 (541)
++|++|++++|++.+.
T Consensus 468 ~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 468 TSLQKIWLHTNPWDCS 483 (520)
T ss_dssp TTCCEEECCSSCBCCC
T ss_pred CcccEEECcCCCCccc
Confidence 7777777777776543
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=329.52 Aligned_cols=503 Identities=22% Similarity=0.157 Sum_probs=353.8
Q ss_pred CCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEee
Q 036588 21 YRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLF 100 (541)
Q Consensus 21 ~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 100 (541)
..+++|++++|.|++..+.+|+++++|++|+|++|.++...+.+|.++++|++|++++|++ +.+|...+.++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l-~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-CEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC-CCCCHHHhcCCCCCCEEE
Confidence 4799999999999988888999999999999999999966778899999999999999998 567777777799999999
Q ss_pred ccccccCccCCccCCCCCCCcEEecCCCccc------cccccCcceEEEecCccccccCCccccCCCCc----cEEEecc
Q 036588 101 LKSNMFHGKIPSTLSSCKRLRETSLSLNDFF------WDHTKRNWQQLYLSKNMFYGEIPSDIANCSYL----RILVLQF 170 (541)
Q Consensus 101 l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L----~~L~l~~ 170 (541)
+++|+++...+..|+++++|++|+++++.+. ....+++|+.|++++|.+.+..+..+..++++ ..++++.
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 9999999777778999999999888887664 23345677777777777776666555544333 3566666
Q ss_pred CcccccCCccccccCCCcEEEccCceeeee--ccCCCCcCCCCEEECCCCc------ccCCCCcccCCCCCccEEeccCC
Q 036588 171 NNFSGAIPKEISNLTKLEKLDLQYNKLQGT--IPYAGHLYQLQWLDLSDNQ------LSGSLPSFKFKMPLLQFLDLSSN 242 (541)
Q Consensus 171 ~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~------~~~~~~~~~~~~~~L~~L~l~~~ 242 (541)
+.+....+. ......++.+.+.++..... ...+..+..++...+.... +.......+.....+....+..+
T Consensus 211 n~l~~i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~ 289 (635)
T 4g8a_A 211 NPMNFIQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 289 (635)
T ss_dssp CCCCEECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred CcccccCcc-cccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence 666533322 22334455566555432211 1113334444444332211 11111222333334444444332
Q ss_pred cccC--cCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccc
Q 036588 243 RLSA--ELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGT 320 (541)
Q Consensus 243 ~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 320 (541)
.... ......+....+++.+.+.++.+... ..+.....++.|++.++.+..... ..++.|+.+.+..+.....
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~ 364 (635)
T 4g8a_A 290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA 364 (635)
T ss_dssp CCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB
T ss_pred hhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC
Confidence 2111 11122345566778888777665433 234556778888888887654332 2456788888887765532
Q ss_pred cccccccCCCcEEeccCccccC--CCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCC-cCC
Q 036588 321 ILYVGHLLQLQWLDLSDNQLSG--SLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIP-SDT 397 (541)
Q Consensus 321 ~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~ 397 (541)
.....+++|+.++++.+.+.. ..+..+..+.+|+.+++..+... ... ..+..+++|+.+++..+......+ ..+
T Consensus 365 -~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 441 (635)
T 4g8a_A 365 -FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVF 441 (635)
T ss_dssp -CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EEC-SCCTTCTTCCEEECTTSEEESTTSSCTT
T ss_pred -cccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-ccc-ccccccccccchhhhhcccccccccccc
Confidence 334567888888888876642 23344556778888888887664 222 234578889999988877654433 457
Q ss_pred cCCccCCeEEcccCCCCCccchhhhccCCCcEEEcccccccc-ccC-CCcccCCcceEeccCCcCCCCCCccccCCCCcc
Q 036588 398 QNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQG-TIP-YAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQ 475 (541)
Q Consensus 398 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 475 (541)
..+++++.++++.|.+....+..+..+++++.|++++|.... ..+ .+..+++|+.|++++|.+....+..+.++++|+
T Consensus 442 ~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~ 521 (635)
T 4g8a_A 442 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 521 (635)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCC
Confidence 788899999999998887777788888999999999887543 233 377888999999999988877888888999999
Q ss_pred EeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCc-cccceEEeeccccc
Q 036588 476 FLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNC-SYLRILVVQFNNFS 534 (541)
Q Consensus 476 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~ 534 (541)
+|++++|++.+ ++...+..+++|+.|++++|.+.+..|+.+..+ ++|+.|++++|++.
T Consensus 522 ~L~Ls~N~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 522 VLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp EEECTTSCCCB-CCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred EEECCCCcCCC-CChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 99999998854 555778889999999999999998888888887 58999999988875
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=322.59 Aligned_cols=389 Identities=22% Similarity=0.259 Sum_probs=291.4
Q ss_pred CcceEEEecCccccccCCccccCCCCccEEEe-ccCccccc---------------------------------------
Q 036588 137 RNWQQLYLSKNMFYGEIPSDIANCSYLRILVL-QFNNFSGA--------------------------------------- 176 (541)
Q Consensus 137 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l-~~~~i~~~--------------------------------------- 176 (541)
.+++.|+++++.+.+.+|..++.+++|+.|++ ++|.+...
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57888999999999888989999999999999 55532211
Q ss_pred -------------------------------------CCccccccCCCcEEEccCceeee------------------ec
Q 036588 177 -------------------------------------IPKEISNLTKLEKLDLQYNKLQG------------------TI 201 (541)
Q Consensus 177 -------------------------------------~~~~l~~l~~L~~L~l~~~~~~~------------------~~ 201 (541)
+|..++++++|+.|++++|.+.+ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 56778888888888888888877 45
Q ss_pred cCCC--CcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCc-ccC-cCChhh------hccCCCCcEEEecCccccc
Q 036588 202 PYAG--HLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNR-LSA-ELPTNV------FHNLPFLEELYLSNNMFYG 271 (541)
Q Consensus 202 ~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~------~~~~~~L~~L~l~~~~~~~ 271 (541)
..++ .+++|+.|++++|.+.+.+|..+..+++|+.|++++|. +.+ .+|..+ +..+++|+.|++++|.+.
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~- 561 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE- 561 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-
T ss_pred hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-
Confidence 5566 88888888888888777888888888888888888887 654 455432 234558888888888887
Q ss_pred cCCC--CCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCC-CcEEeccCccccCCCCccc
Q 036588 272 EIPS--DTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQ-LQWLDLSDNQLSGSLPSFK 348 (541)
Q Consensus 272 ~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~ 348 (541)
..|. .+..+++|+.|++++|.+. .++ .+..+++|+.|++++|.+......+..+++ |+.|++++|.+. .++..+
T Consensus 562 ~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~ 638 (876)
T 4ecn_A 562 EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIF 638 (876)
T ss_dssp BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCC
T ss_pred ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhh
Confidence 6777 7888888888888888887 555 678888888888888888754445777887 888888888877 555555
Q ss_pred CCCC--cceEEEcccCcCcCcCChhh--h--cCCCCccEEEccCcccccCCCcC-CcCCccCCeEEcccCCCCCccchhh
Q 036588 349 FNMP--LLQFLDLSSNRLSVELPTNV--F--HNLPFLEELYLSNNMFYGEIPSD-TQNCSYLRILVLKFNNFPGAIPKEI 421 (541)
Q Consensus 349 ~~~~--~L~~L~l~~~~~~~~~~~~~--~--~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l 421 (541)
...+ +|+.|++++|.+.+.++... . ..+++|+.|++++|.+. .++.. +..+++|+.|++++|.+.......+
T Consensus 639 ~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~ 717 (876)
T 4ecn_A 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSL 717 (876)
T ss_dssp CTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSS
T ss_pred hccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHh
Confidence 5554 48888888888765433211 1 13457888888888887 44433 4578888888888888874433333
Q ss_pred h-------ccCCCcEEEccccccccccCCCc--ccCCcceEeccCCcCCCCCCccccCCCCccEeeCCC------Ccccc
Q 036588 422 S-------NLTKLEKLDLQYNRLQGTIPYAG--HLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSS------NRLST 486 (541)
Q Consensus 422 ~-------~~~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~ 486 (541)
. +|++|+.|++++|++......+. .+++|+.|++++|.+.. +|..+..+++|+.|++++ |.+.+
T Consensus 718 ~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~ 796 (876)
T 4ecn_A 718 KPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILR 796 (876)
T ss_dssp SCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCC
T ss_pred ccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccc
Confidence 3 23488888888888874444454 78888888888888885 677778888888888866 66666
Q ss_pred ccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeecccccc
Q 036588 487 ELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSG 535 (541)
Q Consensus 487 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 535 (541)
.+| ..+..+++|+.|++++|++ +.+|..+. ++|+.|++++|++..
T Consensus 797 ~ip-~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 797 QWP-TGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp CCC-TTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred cCh-HHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCc
Confidence 666 5677788888888888888 47777755 688888888888753
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=309.79 Aligned_cols=449 Identities=21% Similarity=0.170 Sum_probs=257.6
Q ss_pred CeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeec
Q 036588 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFL 101 (541)
Q Consensus 22 ~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 101 (541)
..++++++++++++ +|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+.+..|..+.. +++|++|++
T Consensus 32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L 107 (562)
T 3a79_B 32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF-NQDLEYLDV 107 (562)
T ss_dssp -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTT-CTTCCEEEC
T ss_pred CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCC-CCCCCEEEC
Confidence 34899999999995 666554 89999999999998677789999999999999999886554555555 999999999
Q ss_pred cccccCccCCccCCCCCCCcEEecCCCcccc------ccccCcceEEEecCccccccCCccccCCCCc--cEEEeccCcc
Q 036588 102 KSNMFHGKIPSTLSSCKRLRETSLSLNDFFW------DHTKRNWQQLYLSKNMFYGEIPSDIANCSYL--RILVLQFNNF 173 (541)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~i 173 (541)
++|+++ .+|.. .+++|++|+++++.+.. +..+++|+.|++++|.+... .+..+++| +.|++++|.+
T Consensus 108 s~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 108 SHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp TTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred CCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence 999988 45555 78888887777776542 23345666666666665542 33334444 6666666666
Q ss_pred --cccCCccccccCC-CcEEEccCceeeeeccC--CCCcCCCCEEECCCCccc----CCCCcccCCCCCccEEeccCCcc
Q 036588 174 --SGAIPKEISNLTK-LEKLDLQYNKLQGTIPY--AGHLYQLQWLDLSDNQLS----GSLPSFKFKMPLLQFLDLSSNRL 244 (541)
Q Consensus 174 --~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~ 244 (541)
....+..+..+.. ...++++++.+...... +..+++|+.++++++... ......+..+++|+.+.+.++.+
T Consensus 182 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l 261 (562)
T 3a79_B 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET 261 (562)
T ss_dssp CCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEE
T ss_pred cccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcC
Confidence 4445555554431 11334444443332221 345566666666655310 01112234455666666655544
Q ss_pred cCcCChhh--hccCCCCcEEEecCccccccCCCCC-----cCcccccEEEecccccCCCcc-ccccc---cCCccEEEee
Q 036588 245 SAELPTNV--FHNLPFLEELYLSNNMFYGEIPSDT-----ANCSYLRILVLRFNNFSGAIP-KEISN---LTKLEKLDLQ 313 (541)
Q Consensus 245 ~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~-~~l~~---l~~L~~L~l~ 313 (541)
.+...... ....++|++|++++|.+.+..|..+ ..++.|+.+++..+.+ ..+ ..+.. ..+|+.|+++
T Consensus 262 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~ 339 (562)
T 3a79_B 262 TWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSIS 339 (562)
T ss_dssp CHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEE
T ss_pred cHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEcc
Confidence 32111111 0122366666666666665555544 4444444444444433 111 11111 2456666666
Q ss_pred CCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCCh--hhhcCCCCccEEEccCccccc
Q 036588 314 YNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPT--NVFHNLPFLEELYLSNNMFYG 391 (541)
Q Consensus 314 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~ 391 (541)
+|.+.... ....+++|++|++++|.+....+..+..+++|+.|++++|.++ .++. ..+..+++|+.|++++|.+.+
T Consensus 340 ~n~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 340 DTPFIHMV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNS 417 (562)
T ss_dssp SSCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCC-BTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred CCCccccc-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcC-CcccchhhhcCCCCCCEEECCCCcCCC
Confidence 66553221 1245566666666666666555555666666666666666664 2221 234456666666666666654
Q ss_pred CCC-cCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccC
Q 036588 392 EIP-SDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFK 470 (541)
Q Consensus 392 ~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 470 (541)
.++ ..+..+++|++|++++|.+++..+..+. ++|+.|++++|++....+.+..+++|+.|++++|.+....+..+..
T Consensus 418 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 495 (562)
T 3a79_B 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDR 495 (562)
T ss_dssp CCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTT
T ss_pred ccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhc
Confidence 233 2355566666666666665543333222 4666666666665543333445666666666666665322223555
Q ss_pred CCCccEeeCCCCcccc
Q 036588 471 MPLLQFLDLSSNRLST 486 (541)
Q Consensus 471 ~~~L~~L~l~~~~~~~ 486 (541)
+++|+.|++++|++.+
T Consensus 496 l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 496 LTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CTTCCCEECCSCCBCC
T ss_pred CCCCCEEEecCCCcCC
Confidence 6666666666666544
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-37 Score=314.06 Aligned_cols=456 Identities=18% Similarity=0.126 Sum_probs=249.5
Q ss_pred cCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCc
Q 036588 42 GNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLR 121 (541)
Q Consensus 42 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 121 (541)
..+...++++++++.++ .+|..+. ++|++|++++|.+. .++...+.++++|++|++++|.++...|..|.++++|+
T Consensus 28 ~~~~~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 103 (562)
T 3a79_B 28 FSNELESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLE 103 (562)
T ss_dssp -----CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred cccCCCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCC
Confidence 33455589999999998 6887664 89999999999985 45544344499999999999999988899999999999
Q ss_pred EEecCCCcccccc--ccCcceEEEecCcccccc-CCccccCCCCccEEEeccCcccccCCccccccCCC--cEEEccCce
Q 036588 122 ETSLSLNDFFWDH--TKRNWQQLYLSKNMFYGE-IPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKL--EKLDLQYNK 196 (541)
Q Consensus 122 ~l~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L--~~L~l~~~~ 196 (541)
+|+++++.+.... .+++|++|++++|.+.+. .+..+..+++|++|++++|.+... .+..+++| ++|++++|.
T Consensus 104 ~L~Ls~N~l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 104 YLDVSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp EEECTTSCCCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESS
T ss_pred EEECCCCcCCccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccc
Confidence 9888777654221 345566666666665542 234556666666666666555432 23333333 666665554
Q ss_pred e--eeeccC-CCCcC--CCCEEECCCCcccCCCCc-ccCCCCCccEEeccCCcccC---cCChhhhccCCCCcEEEecCc
Q 036588 197 L--QGTIPY-AGHLY--QLQWLDLSDNQLSGSLPS-FKFKMPLLQFLDLSSNRLSA---ELPTNVFHNLPFLEELYLSNN 267 (541)
Q Consensus 197 ~--~~~~~~-~~~~~--~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~~L~~L~l~~~ 267 (541)
+ ....+. +..+. .+ .++++++.+....+. .+..+++|+.++++++...- ......+..+++|+.+++.++
T Consensus 181 l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~ 259 (562)
T 3a79_B 181 YHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI 259 (562)
T ss_dssp CCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEE
T ss_pred ccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCC
Confidence 4 221111 11111 11 233344443322221 22334555555555542100 000112344445555544443
Q ss_pred cccccC----CCCCcCcccccEEEecccccCCCccccc-----cccCCccEEEeeCCcccccccc-ccccCCCcEEeccC
Q 036588 268 MFYGEI----PSDTANCSYLRILVLRFNNFSGAIPKEI-----SNLTKLEKLDLQYNRLQGTILY-VGHLLQLQWLDLSD 337 (541)
Q Consensus 268 ~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~ 337 (541)
.+.+.. +.. ...++|++|++++|.+....+..+ ..++.|+.+++..+.+ ..... +..
T Consensus 260 ~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~----------- 326 (562)
T 3a79_B 260 ETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYS----------- 326 (562)
T ss_dssp EECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHH-----------
T ss_pred cCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhh-----------
Confidence 322110 000 011245555555544443333322 2233333333332222 00000 000
Q ss_pred ccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCcc
Q 036588 338 NQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAI 417 (541)
Q Consensus 338 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 417 (541)
+....+|++|++++|.+.. .. ....+++|++|++++|.+.+..+..+..+++|++|++++|++....
T Consensus 327 ----------~~~~~~L~~L~l~~n~~~~-~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 393 (562)
T 3a79_B 327 ----------VFAEMNIKMLSISDTPFIH-MV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF 393 (562)
T ss_dssp ----------HHHTCCCSEEEEESSCCCC-CC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT
T ss_pred ----------hhccCcceEEEccCCCccc-cc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc
Confidence 0011345666666655431 11 1135666777777777666555666667777777777777666422
Q ss_pred --chhhhccCCCcEEEccccccccccCC--CcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccc
Q 036588 418 --PKEISNLTKLEKLDLQYNRLQGTIPY--AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVF 493 (541)
Q Consensus 418 --~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 493 (541)
+..+..+++|+.|++++|.+....+. +..+++|+.|++++|.+....+..+. ++|++|++++|.+ +.+|...+
T Consensus 394 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l-~~ip~~~~ 470 (562)
T 3a79_B 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRI-MSIPKDVT 470 (562)
T ss_dssp HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCC-CCCCTTTT
T ss_pred cchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcC-cccChhhc
Confidence 34566677777777777776652332 55567777777777766543333322 5777777777776 34664433
Q ss_pred cCCcccceeeeccceecccCCCC-CCCccccceEEeeccccccc
Q 036588 494 HNLPFLEELYLSNNMFYGEIPSD-TPNCSYLRILVVQFNNFSGA 536 (541)
Q Consensus 494 ~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~ 536 (541)
.+++|+.|++++|.+. .+|.. +..+++|+.|++++|++.+.
T Consensus 471 -~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 471 -HLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp -SSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred -CCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 6777777777777777 44444 77777777777777776643
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=307.55 Aligned_cols=500 Identities=21% Similarity=0.195 Sum_probs=333.7
Q ss_pred cCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCc
Q 036588 29 SGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHG 108 (541)
Q Consensus 29 ~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 108 (541)
++.+++ .+|..+- +++++|||++|.++...+.+|.++++|++|++++|.+ +.++...+.++++|++|++++|+++.
T Consensus 39 ~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i-~~i~~~~f~~L~~L~~L~Ls~N~l~~ 114 (635)
T 4g8a_A 39 MELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQS 114 (635)
T ss_dssp TTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC-CEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred CCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC-CCcChhHhcCCCCCCEEEccCCcCCC
Confidence 444555 4555442 4799999999999966667899999999999999998 45666666669999999999999997
Q ss_pred cCCccCCCCCCCcEEecCCCcccc-----ccccCcceEEEecCcccccc-CCccccCCCCccEEEeccCcccccCCcccc
Q 036588 109 KIPSTLSSCKRLRETSLSLNDFFW-----DHTKRNWQQLYLSKNMFYGE-IPSDIANCSYLRILVLQFNNFSGAIPKEIS 182 (541)
Q Consensus 109 ~~~~~~~~l~~L~~l~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~ 182 (541)
..+..|.++++|++|+++++.+.. +..+++|++|++++|.+... .+..+..+++|+.|++++|.+....+..+.
T Consensus 115 l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 115 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 194 (635)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence 777889999999997777665542 23345555666655555432 344455555566666655555544444444
Q ss_pred ccCCCc----EEEccCceeeeeccCCCCcCCCCEEECCCCcccC-CCCcccCCCCCccEEeccCCccc-----CcCChhh
Q 036588 183 NLTKLE----KLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSG-SLPSFKFKMPLLQFLDLSSNRLS-----AELPTNV 252 (541)
Q Consensus 183 ~l~~L~----~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~ 252 (541)
.+.+++ .++++.+.+....+.......++.+++.++.... ..+..+..++.++...+...... .......
T Consensus 195 ~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~ 274 (635)
T 4g8a_A 195 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 274 (635)
T ss_dssp HHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTT
T ss_pred chhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccc
Confidence 433322 3445555444443333333344444444432210 11122333344443333221110 1111122
Q ss_pred hccCCCCcEEEecCccc---cccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCC
Q 036588 253 FHNLPFLEELYLSNNMF---YGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQ 329 (541)
Q Consensus 253 ~~~~~~L~~L~l~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 329 (541)
+.....+....+..... .......+....+++.+.+.++.+... ..+.....++.|++.++.+.... ...++.
T Consensus 275 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~ 350 (635)
T 4g8a_A 275 LEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFP--TLKLKS 350 (635)
T ss_dssp TGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCC--CCBCTT
T ss_pred cccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcC--cccchh
Confidence 23333344333332211 112334455566777777776655432 23455677888888888765332 234567
Q ss_pred CcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCc-CChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEc
Q 036588 330 LQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVE-LPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVL 408 (541)
Q Consensus 330 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 408 (541)
++.+.+..+...... ....+++|+.+.+++|.+... .....+..+.+|+.+++..+... ..+..+..+++|+.+++
T Consensus 351 L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l 427 (635)
T 4g8a_A 351 LKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDF 427 (635)
T ss_dssp CCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEEC
T ss_pred hhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhh
Confidence 888888777655322 234688999999999877421 12233447889999999988876 34556888999999999
Q ss_pred ccCCCCCc-cchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCC-CCCccccCCCCccEeeCCCCccc
Q 036588 409 KFNNFPGA-IPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSG-SLPSFKFKMPLLQFLDLSSNRLS 485 (541)
Q Consensus 409 ~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~ 485 (541)
..+..... ....+..+++++.+++++|.+....+. +..++.++.|++++|.... ..+..+..+++|++|++++|++.
T Consensus 428 ~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~ 507 (635)
T 4g8a_A 428 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 507 (635)
T ss_dssp TTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred hhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccC
Confidence 88765443 345678899999999999998866655 6778999999999997543 56778899999999999999996
Q ss_pred cccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeecccccccCCCC
Q 036588 486 TELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPKE 540 (541)
Q Consensus 486 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~ 540 (541)
+ ++...|.++++|++|++++|.+.+..+..|..+++|+.|++++|++++..|+.
T Consensus 508 ~-l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 561 (635)
T 4g8a_A 508 Q-LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561 (635)
T ss_dssp E-ECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred C-cChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence 5 54478899999999999999999888888999999999999999999887764
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=292.71 Aligned_cols=358 Identities=23% Similarity=0.194 Sum_probs=181.6
Q ss_pred CeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCcc-chhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEee
Q 036588 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSI-PASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLF 100 (541)
Q Consensus 22 ~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 100 (541)
++++|+++++.+++..|..|+++++|++|++++|.+.+.+ +..|.++++|++|++++|.+.+..|..+.. +++|++|+
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~ 109 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNG-LANLEVLT 109 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTT-CTTCCEEE
T ss_pred ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccC-cccCCEEe
Confidence 4555555555555544555555555555555555544222 344555555555555555553333333333 55555555
Q ss_pred ccccccCccCCcc--CCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCcc-ccCCCCccEEEeccCcccccC
Q 036588 101 LKSNMFHGKIPST--LSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSD-IANCSYLRILVLQFNNFSGAI 177 (541)
Q Consensus 101 l~~~~~~~~~~~~--~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~i~~~~ 177 (541)
+++|.+++..+.. +.++++|++ |++++|.+.+..+.. +..+++|++|++++|.+....
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~-------------------L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEM-------------------LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCE-------------------EECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred CCCCCCCccccCcccccCcccCCE-------------------EECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence 5555554322222 444444444 555555555444443 556666666666666665555
Q ss_pred Ccccccc--CCCcEEEccCceeeeeccC---------CCCcCCCCEEECCCCcccCCCCcccCC---CCCccEEeccCCc
Q 036588 178 PKEISNL--TKLEKLDLQYNKLQGTIPY---------AGHLYQLQWLDLSDNQLSGSLPSFKFK---MPLLQFLDLSSNR 243 (541)
Q Consensus 178 ~~~l~~l--~~L~~L~l~~~~~~~~~~~---------~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~l~~~~ 243 (541)
+..+..+ .+|+.|+++++.+.+.... +..+++|+.|++++|.+.+..+..+.. .++|+.++++++.
T Consensus 171 ~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 250 (455)
T 3v47_A 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250 (455)
T ss_dssp TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCT
T ss_pred hhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccc
Confidence 5555444 4555566655554432221 123344555555555444332222211 2445555555443
Q ss_pred ccCcCChhhhccCCCCcEEEecCccccccCCCCCcC--cccccEEEecccccCCCccccccccCCccEEEeeCCcccccc
Q 036588 244 LSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTAN--CSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTI 321 (541)
Q Consensus 244 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 321 (541)
..+.... ...+.......+.. .++|+.|++++|.+....+..+..+++|+.|++++|.+....
T Consensus 251 ~~~~~~~---------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 315 (455)
T 3v47_A 251 NMGSSFG---------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID 315 (455)
T ss_dssp TTSCCTT---------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred ccccccc---------------hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC
Confidence 2211000 00000011111111 245556666655555444555555566666666666555443
Q ss_pred c-cccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCC
Q 036588 322 L-YVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNC 400 (541)
Q Consensus 322 ~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 400 (541)
+ .+..+++|++|++++|.+....+..+..+++|++|++++|.++ .+....+..+++|++|++.+|++.+..+..+..+
T Consensus 316 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 394 (455)
T 3v47_A 316 DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCccc-ccChhhccccccccEEECCCCccccCCHhHhccC
Confidence 3 2555566666666666555444555566666666666666665 3333445566777777777776665444456667
Q ss_pred ccCCeEEcccCCCCC
Q 036588 401 SYLRILVLKFNNFPG 415 (541)
Q Consensus 401 ~~L~~L~l~~~~~~~ 415 (541)
++|++|++++|++..
T Consensus 395 ~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 395 TSLQKIWLHTNPWDC 409 (455)
T ss_dssp TTCCEEECCSSCBCC
T ss_pred CcccEEEccCCCccc
Confidence 777777777776654
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=286.19 Aligned_cols=375 Identities=22% Similarity=0.223 Sum_probs=227.6
Q ss_pred EEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccc
Q 036588 26 LNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNM 105 (541)
Q Consensus 26 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 105 (541)
++.++.+++ .+|. + .++|++|++++|.+++..|..|.++++|++|++++|.+.+.++...+.++++|++|++++|.
T Consensus 15 ~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 15 AICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp EECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred cCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 444455666 4555 3 38899999999999977799999999999999999988666766655569999999999999
Q ss_pred cCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCC--ccccCCCCccEEEeccCcccccCCcc-cc
Q 036588 106 FHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIP--SDIANCSYLRILVLQFNNFSGAIPKE-IS 182 (541)
Q Consensus 106 ~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~i~~~~~~~-l~ 182 (541)
+....|..++++++|++| ++++|.+.+..+ ..+..+++|++|++++|.+....+.. +.
T Consensus 91 l~~~~~~~~~~l~~L~~L-------------------~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 151 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVL-------------------TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151 (455)
T ss_dssp TCEECTTTTTTCTTCCEE-------------------ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGG
T ss_pred cCccChhhccCcccCCEE-------------------eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccC
Confidence 998888999999998885 444555554333 33888999999999999998776765 78
Q ss_pred ccCCCcEEEccCceeeeeccC-CCCc--CCCCEEECCCCcccCCCCcc--------cCCCCCccEEeccCCcccCcCChh
Q 036588 183 NLTKLEKLDLQYNKLQGTIPY-AGHL--YQLQWLDLSDNQLSGSLPSF--------KFKMPLLQFLDLSSNRLSAELPTN 251 (541)
Q Consensus 183 ~l~~L~~L~l~~~~~~~~~~~-~~~~--~~L~~L~l~~~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~~~~~ 251 (541)
.+++|++|++++|.+.+..+. +..+ .+|+.|+++++.+....+.. +..+++|++|++++|.+.+..+..
T Consensus 152 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 231 (455)
T 3v47_A 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR 231 (455)
T ss_dssp GCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHH
T ss_pred CCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhh
Confidence 899999999999988765543 4443 67888888888876544332 224567777777777665444433
Q ss_pred hhcc--CCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCcccccc--ccCCccEEEeeCCcccccccc-ccc
Q 036588 252 VFHN--LPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEIS--NLTKLEKLDLQYNRLQGTILY-VGH 326 (541)
Q Consensus 252 ~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~-~~~ 326 (541)
++.. .++|+.|++.++....... . ...+.......+. ..++|+.|++++|.+....+. +..
T Consensus 232 ~~~~~~~~~L~~L~l~~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 297 (455)
T 3v47_A 232 FFDAIAGTKIQSLILSNSYNMGSSF-G-------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH 297 (455)
T ss_dssp HHHHTTTCCEEEEECTTCTTTSCCT-T-------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT
T ss_pred hhccccccceeeEeecccccccccc-c-------------hhhhccCcccccccccccCceEEEecCccccccchhhccc
Confidence 3221 2556666666554332110 0 0001101111111 124556666665555433322 444
Q ss_pred cCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeE
Q 036588 327 LLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRIL 406 (541)
Q Consensus 327 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 406 (541)
+++|++|++++|.+....+..+..+++|++|++++|.++ .+....+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 376 (455)
T 3v47_A 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376 (455)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC-CcChhHhcCcccCCEEECCCCcccccChhhccccccccEE
Confidence 555555555555554444444444555555555555443 2333333444444444444444443334444444444444
Q ss_pred EcccCCCCCccchhhhccCCCcEEEccccccc
Q 036588 407 VLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQ 438 (541)
Q Consensus 407 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 438 (541)
++++|++....+..+..+++|+.|++++|++.
T Consensus 377 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 377 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 44444444433333444444444444444443
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-34 Score=281.22 Aligned_cols=419 Identities=24% Similarity=0.243 Sum_probs=156.0
Q ss_pred CCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEE
Q 036588 44 LSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRET 123 (541)
Q Consensus 44 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 123 (541)
.++|++|+++++.+ +.+|.+++++++|++|++++|.+.+.+|..++. +++|+++++..|.. .+++++
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~-l~~L~~l~l~~c~~-----------~~l~~L 76 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGE-QREMAVSRLRDCLD-----------RQAHEL 76 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCC-CHHHHHHHHHHHHH-----------HTCSEE
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCccccc-chhcchhhhhhhhc-----------cCCCEE
Confidence 46777777777777 477777777777777777777766666766665 66665555544432 234444
Q ss_pred ecCCCcccccc-ccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeeecc
Q 036588 124 SLSLNDFFWDH-TKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIP 202 (541)
Q Consensus 124 ~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 202 (541)
+++++.+.... .+++|+.|++++|.+.+ ++.. .++|+.|++++|.+.. ++.. .++|++|++++|.+.+. +
T Consensus 77 ~l~~~~l~~lp~~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~l-p 147 (454)
T 1jl5_A 77 ELNNLGLSSLPELPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEKL-P 147 (454)
T ss_dssp ECTTSCCSCCCSCCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSSC-C
T ss_pred EecCCccccCCCCcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCCC-c
Confidence 44444433211 12345555555555554 2321 2556666666555542 1111 14555566655555542 2
Q ss_pred CCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCccc
Q 036588 203 YAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSY 282 (541)
Q Consensus 203 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 282 (541)
.++.+++|++|++++|.+.+ +|.. .++|++|++++|.+.+ ++ .+..+++|+.|++++|.+.+ .+.. .++
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~l~~-l~~~---~~~ 216 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNSLKK-LPDL---PLS 216 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSS-CCCC---CTT
T ss_pred ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCcCCc-CCCC---cCc
Confidence 45555555555555555542 2222 2355555555555432 32 13455555555555555442 2211 134
Q ss_pred ccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccC
Q 036588 283 LRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSN 362 (541)
Q Consensus 283 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 362 (541)
|++|++++|.+. .++ .+..+++|+.|++++|.+..... ..++|+.|++++|.+.. ++. ..++|+.|++++|
T Consensus 217 L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~l~~-l~~---~~~~L~~L~ls~N 287 (454)
T 1jl5_A 217 LESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTD-LPE---LPQSLTFLDVSEN 287 (454)
T ss_dssp CCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSS
T ss_pred ccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcccc---cccccCEEECCCCcccc-cCc---ccCcCCEEECcCC
Confidence 555555555544 223 24455555555555554442211 12445555555554442 111 1244555555554
Q ss_pred cCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCC-ccCCeEEcccCCCCCccchhhhccCCCcEEEcccccccccc
Q 036588 363 RLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNC-SYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTI 441 (541)
Q Consensus 363 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 441 (541)
.+++ ++. ..++|+.|++++|.+.+. ..+ ++|++|++++|++.+ .+.. +++|+.|++++|++...
T Consensus 288 ~l~~-l~~----~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~l- 352 (454)
T 1jl5_A 288 IFSG-LSE----LPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEV- 352 (454)
T ss_dssp CCSE-ESC----CCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-
T ss_pred ccCc-ccC----cCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccc-
Confidence 4431 111 113444555544444321 111 244444554444442 1111 24444444444444421
Q ss_pred CCCcccCCcceEeccCCcCCC--CCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecc--cCCCCC
Q 036588 442 PYAGHLFQLQWLDLSDNQLSG--SLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYG--EIPSDT 517 (541)
Q Consensus 442 ~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~ 517 (541)
+. .+++|+.|++++|.+.. .+|..+ ..|. .|...+.++. .+++|+.|++++|++.+ .+|
T Consensus 353 p~--~l~~L~~L~L~~N~l~~l~~ip~~l------~~L~--~n~~~~~i~~----~~~~L~~L~ls~N~l~~~~~iP--- 415 (454)
T 1jl5_A 353 PE--LPQNLKQLHVEYNPLREFPDIPESV------EDLR--MNSHLAEVPE----LPQNLKQLHVETNPLREFPDIP--- 415 (454)
T ss_dssp CC--CCTTCCEEECCSSCCSSCCCCCTTC------CEEE--CCC------------------------------------
T ss_pred cc--hhhhccEEECCCCCCCcCCCChHHH------Hhhh--hccccccccc----ccCcCCEEECCCCcCCccccch---
Confidence 11 23444444444444443 222221 1111 1222222221 12678888888888774 233
Q ss_pred CCccccceEEeecccccccCCC
Q 036588 518 PNCSYLRILVVQFNNFSGAIPK 539 (541)
Q Consensus 518 ~~~~~L~~L~l~~~~~~~~~p~ 539 (541)
++++.|.+.+|.+.+.+|-
T Consensus 416 ---~sl~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 416 ---ESVEDLRMNSERVVDPYEF 434 (454)
T ss_dssp ----------------------
T ss_pred ---hhHhheeCcCcccCCcccc
Confidence 3466677777777766654
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-33 Score=275.63 Aligned_cols=345 Identities=26% Similarity=0.289 Sum_probs=266.0
Q ss_pred cCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeeeccCCCCcCCCCEEEC
Q 036588 136 KRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDL 215 (541)
Q Consensus 136 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 215 (541)
.++++.|++.++.+.. ++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh-hcCCCCCCEEEC
Confidence 4678889999888775 33 478889999999999988744 33 8888999999999998886665 888999999999
Q ss_pred CCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCC
Q 036588 216 SDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSG 295 (541)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 295 (541)
++|.+.... . +..+++|++|++++|.+.+ ++ .+..+++|+.|++.+ .+... ..+..+++|+.|++++|.+..
T Consensus 120 ~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 120 FNNQITDID-P-LKNLTNLNRLELSSNTISD-IS--ALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKVSD 191 (466)
T ss_dssp CSSCCCCCG-G-GTTCTTCSEEEEEEEEECC-CG--GGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCCh-H-HcCCCCCCEEECCCCccCC-Ch--hhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcCCC
Confidence 998887543 2 7788999999999988753 33 367888999999864 33322 237788899999999888764
Q ss_pred CccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcC
Q 036588 296 AIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHN 375 (541)
Q Consensus 296 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 375 (541)
. ..+..+++|+.|++++|.+....+ +..+++|++|++++|.+... ..+..+++|+.|++++|.+++..+ +..
T Consensus 192 ~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~ 263 (466)
T 1o6v_A 192 I--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP---LSG 263 (466)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GTT
T ss_pred C--hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh---hhc
Confidence 3 347788899999999888765443 67788899999988887643 356678888888888888763322 567
Q ss_pred CCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEec
Q 036588 376 LPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDL 455 (541)
Q Consensus 376 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 455 (541)
+++|+.|++++|.+.+.. .+..+++|++|++++|++....+ +..+++|+.|++++|++.+..+ +..+++|+.|++
T Consensus 264 l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l 338 (466)
T 1o6v_A 264 LTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFF 338 (466)
T ss_dssp CTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEEC
T ss_pred CCCCCEEECCCCccCccc--cccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeEC
Confidence 888888888888876432 27788888888888888875443 7788888888888888775544 667888888888
Q ss_pred cCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecc
Q 036588 456 SDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYG 511 (541)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 511 (541)
++|.+... ..+..+++|+.|++++|++.+..+ +..+++|+.|++++|++.+
T Consensus 339 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 339 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG---GTTCTTCCEEECCCEEEEC
T ss_pred CCCccCCc--hhhccCCCCCEEeCCCCccCccch---hhcCCCCCEEeccCCcccC
Confidence 88887754 467788888888888888865443 6778888888888888885
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=275.59 Aligned_cols=405 Identities=25% Similarity=0.328 Sum_probs=239.1
Q ss_pred CCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCC-------------cEEEeecCccCCCCC
Q 036588 20 TYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSL-------------LSINFINNALFGELP 86 (541)
Q Consensus 20 ~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L-------------~~L~l~~~~~~~~~~ 86 (541)
..+|++|+++++++ +.+|++|+++++|++|++++|.+.+.+|..++++++| ++|++++|.+ +.+|
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l-~~lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL-SSLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC-SCCC
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcc-ccCC
Confidence 45899999999999 5899999999999999999999988999998887765 9999999987 4555
Q ss_pred hhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCcccccccc-CcceEEEecCccccccCCccccCCCCccE
Q 036588 87 PNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTK-RNWQQLYLSKNMFYGEIPSDIANCSYLRI 165 (541)
Q Consensus 87 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 165 (541)
.. .++|++|+++++.+++ +|.. +++|++++++++.+...... ++|++|++++|.+.+ +| .+..+++|++
T Consensus 88 ~~----~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~ 157 (454)
T 1jl5_A 88 EL----PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKI 157 (454)
T ss_dssp SC----CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCE
T ss_pred CC----cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCE
Confidence 52 5899999999998885 5543 47889999988877755444 688888888888875 55 5888888888
Q ss_pred EEeccCcccccCCccccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCccc
Q 036588 166 LVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLS 245 (541)
Q Consensus 166 L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 245 (541)
|++++|.+.. +|..+ .+|++|++++|.+.+. +.+..+++|+.|++++|.+.+ ++.. .++|++|++++|.+.
T Consensus 158 L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~l-~~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 158 IDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEEL-PELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE 228 (454)
T ss_dssp EECCSSCCSC-CCCCC---TTCCEEECCSSCCSSC-CCCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS
T ss_pred EECCCCcCcc-cCCCc---ccccEEECcCCcCCcC-ccccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC
Confidence 8888888773 44432 4888888888887764 467888888888888887764 3332 257888888888775
Q ss_pred CcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCcccccccccc
Q 036588 246 AELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVG 325 (541)
Q Consensus 246 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 325 (541)
.++. +..+++|+.|++++|.+.+ .+. ..++|++|++++|.+.. .+.. .++|+.|++++|.+.... .
T Consensus 229 -~lp~--~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~-~-- 294 (454)
T 1jl5_A 229 -ELPE--LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLS-E-- 294 (454)
T ss_dssp -SCCC--CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEES-C--
T ss_pred -cccc--cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCccc-C--
Confidence 5553 5778888888888887764 332 23678888888887764 3322 367888888888766422 1
Q ss_pred ccCCCcEEeccCccccCCCCcccCCC-CcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCC
Q 036588 326 HLLQLQWLDLSDNQLSGSLPSFKFNM-PLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLR 404 (541)
Q Consensus 326 ~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 404 (541)
..++|++|++++|.+... ... ++|+.|++++|.++ .++. .+++|+.|++++|.+. .++. .+++|+
T Consensus 295 ~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~-~lp~----~~~~L~~L~L~~N~l~-~lp~---~l~~L~ 360 (454)
T 1jl5_A 295 LPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLI-ELPA----LPPRLERLIASFNHLA-EVPE---LPQNLK 360 (454)
T ss_dssp CCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS-CCCC---CCTTCC
T ss_pred cCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCccc-cccc----cCCcCCEEECCCCccc-cccc---hhhhcc
Confidence 125788888888776631 122 47888888888776 3433 2577888888888776 3333 467788
Q ss_pred eEEcccCCCCC--ccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCC--CCCccccCCCCccEeeCC
Q 036588 405 ILVLKFNNFPG--AIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSG--SLPSFKFKMPLLQFLDLS 480 (541)
Q Consensus 405 ~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~ 480 (541)
+|++++|++.+ ..|..+.. +. .+...+..+. .+++|+.|++++|.+.. .+| ++++.|.+.
T Consensus 361 ~L~L~~N~l~~l~~ip~~l~~------L~--~n~~~~~i~~--~~~~L~~L~ls~N~l~~~~~iP------~sl~~L~~~ 424 (454)
T 1jl5_A 361 QLHVEYNPLREFPDIPESVED------LR--MNSHLAEVPE--LPQNLKQLHVETNPLREFPDIP------ESVEDLRMN 424 (454)
T ss_dssp EEECCSSCCSSCCCCCTTCCE------EE--CCC----------------------------------------------
T ss_pred EEECCCCCCCcCCCChHHHHh------hh--hccccccccc--ccCcCCEEECCCCcCCccccch------hhHhheeCc
Confidence 88888887765 33443332 22 2322222222 34789999999998874 333 357778888
Q ss_pred CCccccccC
Q 036588 481 SNRLSTELP 489 (541)
Q Consensus 481 ~~~~~~~~~ 489 (541)
+|.+.+.++
T Consensus 425 ~~~~~~~~~ 433 (454)
T 1jl5_A 425 SERVVDPYE 433 (454)
T ss_dssp ---------
T ss_pred CcccCCccc
Confidence 887755443
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-32 Score=268.51 Aligned_cols=343 Identities=27% Similarity=0.328 Sum_probs=253.6
Q ss_pred CCCCCcEEecCCCccc---cccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEc
Q 036588 116 SCKRLRETSLSLNDFF---WDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDL 192 (541)
Q Consensus 116 ~l~~L~~l~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l 192 (541)
.+++++.+++.++.+. ....+++|++|++++|.+.+..+ +..+++|++|++++|.+....+ ++.+++|++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 119 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred HhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence 3567778888777654 33456788888888888876543 7888888888888888774432 788888888888
Q ss_pred cCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCcccccc
Q 036588 193 QYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGE 272 (541)
Q Consensus 193 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 272 (541)
++|.+.+..+ +..+++|++|++++|.+.. .+ .+..+++|+.|+++++ +.. .+ .+..+++|+.|++++|.+...
T Consensus 120 ~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~~-~~~-~~--~~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 120 FNNQITDIDP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGNQ-VTD-LK--PLANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp CSSCCCCCGG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEES-CCC-CG--GGTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCCChH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCCc-ccC-ch--hhccCCCCCEEECcCCcCCCC
Confidence 8887775543 7788888888888887764 22 4677888888888643 221 22 257788888888888877543
Q ss_pred CCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCC
Q 036588 273 IPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMP 352 (541)
Q Consensus 273 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 352 (541)
..+..+++|++|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|+.|++++|.+....+ +..++
T Consensus 193 --~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~ 265 (466)
T 1o6v_A 193 --SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LSGLT 265 (466)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred --hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchh--hhcCC
Confidence 346778888888888888775433 66788888888888877643 457778888888888888764433 66788
Q ss_pred cceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEc
Q 036588 353 LLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDL 432 (541)
Q Consensus 353 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 432 (541)
+|+.|++++|.+++ .+. +..+++|+.|++++|++.+.. .+..+++|++|++++|.+.+..+ +..+++|+.|++
T Consensus 266 ~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 338 (466)
T 1o6v_A 266 KLTELKLGANQISN-ISP--LAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 338 (466)
T ss_dssp TCSEEECCSSCCCC-CGG--GTTCTTCSEEECCSSCCSCCG--GGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEEC
T ss_pred CCCEEECCCCccCc-ccc--ccCCCccCeEEcCCCcccCch--hhcCCCCCCEEECcCCcCCCchh--hccCccCCEeEC
Confidence 88888888888763 332 557888888888888876432 36778888888888888876544 677888888888
Q ss_pred cccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCcccc
Q 036588 433 QYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLST 486 (541)
Q Consensus 433 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 486 (541)
++|++.+. +.+..+++|+.|++++|.+.+..| +..+++|+.|++++|++.+
T Consensus 339 ~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 339 YNNKVSDV-SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CSSCCCCC-GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCccCCc-hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 88887754 556778888888888888876555 6778888888888888754
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-33 Score=259.42 Aligned_cols=268 Identities=31% Similarity=0.491 Sum_probs=204.7
Q ss_pred CCCCCCCccc--cceeeeCCCC--CCeEEEEecCCccee--eeCCcccCCCCCcEecccc-cccCCccchhhhhcCCCcE
Q 036588 1 NWNTSSSVCN--WTGITCDVRT--YRVTALNISGLNLTV--TIPSELGNLSSLQTLDLSF-NWFSGSIPASIFNMSSLLS 73 (541)
Q Consensus 1 ~~~~~~~~~~--~~~~~~~~~~--~~l~~L~l~~~~i~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~ 73 (541)
+|+.+.++|. |.|+.|+... .+|++|+++++.+++ .+|..|+++++|++|++++ +.+.+.+|..+.++++|++
T Consensus 26 ~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~ 105 (313)
T 1ogq_A 26 SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105 (313)
T ss_dssp TCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSE
T ss_pred CCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCE
Confidence 5998889998 9999998654 799999999999998 8999999999999999995 8888889999999999999
Q ss_pred EEeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccC
Q 036588 74 INFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEI 153 (541)
Q Consensus 74 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 153 (541)
|++++|.+.+.+|..+.. +++|++|++++|.+....|..+.++++|++ |++++|.+.+.+
T Consensus 106 L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~-------------------L~L~~N~l~~~~ 165 (313)
T 1ogq_A 106 LYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPNLVG-------------------ITFDGNRISGAI 165 (313)
T ss_dssp EEEEEECCEEECCGGGGG-CTTCCEEECCSSEEESCCCGGGGGCTTCCE-------------------EECCSSCCEEEC
T ss_pred EECcCCeeCCcCCHHHhC-CCCCCEEeCCCCccCCcCChHHhcCCCCCe-------------------EECcCCcccCcC
Confidence 999999997788888877 999999999999998888888888888888 455555566566
Q ss_pred CccccCCC-CccEEEeccCcccccCCccccccCCCcEEEccCceeeeeccC-CCCcCCCCEEECCCCcccCCCCcccCCC
Q 036588 154 PSDIANCS-YLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPY-AGHLYQLQWLDLSDNQLSGSLPSFKFKM 231 (541)
Q Consensus 154 ~~~~~~~~-~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 231 (541)
|..+..++ +|+.|++++|.+....+..+..++ |++|++++|.+.+..+. +..+++|+.|++++|.+....+. +..+
T Consensus 166 p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l 243 (313)
T 1ogq_A 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLS 243 (313)
T ss_dssp CGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCC
T ss_pred CHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-cccc
Confidence 77777776 788888888887777777777776 88888877777654443 66677777777777776543333 4556
Q ss_pred CCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccc
Q 036588 232 PLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNN 292 (541)
Q Consensus 232 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 292 (541)
++|++|++++|.+.+.++.. +..+++|+.|++++|.+.+..|.. ..+++|+.+++.+|.
T Consensus 244 ~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 244 KNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp TTCCEEECCSSCCEECCCGG-GGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred CCCCEEECcCCcccCcCChH-HhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 66666666666664444433 355666666666666665555544 555666666665554
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-31 Score=261.65 Aligned_cols=234 Identities=23% Similarity=0.180 Sum_probs=148.9
Q ss_pred ccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCccccccc
Q 036588 56 WFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHT 135 (541)
Q Consensus 56 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 135 (541)
......+..+.++++|++|++++|.+. .+| .+.. +++|++|++++|.+++. + ++.+++|++
T Consensus 29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~-~l~~-l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~------------- 89 (457)
T 3bz5_A 29 EMQATDTISEEQLATLTSLDCHNSSIT-DMT-GIEK-LTGLTKLICTSNNITTL-D--LSQNTNLTY------------- 89 (457)
T ss_dssp TCCTTSEEEHHHHTTCCEEECCSSCCC-CCT-TGGG-CTTCSEEECCSSCCSCC-C--CTTCTTCSE-------------
T ss_pred CcCcccccChhHcCCCCEEEccCCCcc-cCh-hhcc-cCCCCEEEccCCcCCeE-c--cccCCCCCE-------------
Confidence 334455667888899999999998884 445 5555 89999999998888753 2 666666666
Q ss_pred cCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeeeccCCCCcCCCCEEEC
Q 036588 136 KRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDL 215 (541)
Q Consensus 136 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 215 (541)
|++++|.+.+. .+..+++|++|++++|.+.. ++ ++.+++|++|++++|.+++. .+..+++|+.|++
T Consensus 90 ------L~Ls~N~l~~~---~~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l 155 (457)
T 3bz5_A 90 ------LACDSNKLTNL---DVTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDC 155 (457)
T ss_dssp ------EECCSSCCSCC---CCTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEEC
T ss_pred ------EECcCCCCcee---ecCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee--ccccCCcCCEEEC
Confidence 55555555543 26778888888888888774 32 77778888888888877653 3667777777777
Q ss_pred CCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCC
Q 036588 216 SDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSG 295 (541)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 295 (541)
++|...+.. .+..+++|++|++++|.+.+ ++ +..+++|+.|++++|.+... .+..+++|+.|++++|.+..
T Consensus 156 ~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 156 HLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE 226 (457)
T ss_dssp TTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC
T ss_pred CCCCccccc--ccccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc
Confidence 777433233 35556677777777766643 33 35566666666666665533 25555666666666665553
Q ss_pred CccccccccCCccEEEeeCCccccccccccccCCCcEEecc
Q 036588 296 AIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLS 336 (541)
Q Consensus 296 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 336 (541)
++ +..+++|+.|++++|.+.... ...+++|+.++++
T Consensus 227 -ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~ 262 (457)
T 3bz5_A 227 -ID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCI 262 (457)
T ss_dssp -CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECT
T ss_pred -cC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEecc
Confidence 22 445555666666555554321 3334444444443
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=267.30 Aligned_cols=300 Identities=20% Similarity=0.178 Sum_probs=229.3
Q ss_pred CCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEee
Q 036588 21 YRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLF 100 (541)
Q Consensus 21 ~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 100 (541)
.++++|+++++.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+ +.+|...+.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL-KLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC-CccCcccccCCCCCCEEE
Confidence 4788899999888877788888899999999988888866788888888899999988887 466666555588889999
Q ss_pred ccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCcc
Q 036588 101 LKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKE 180 (541)
Q Consensus 101 l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 180 (541)
+++|.+....+..+.++++|++ |++++|.+....+..|..+++|+.|++++|.+....+..
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~-------------------L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKS-------------------LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCE-------------------EEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred CCCCccccCChhHccccccCCE-------------------EECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence 8888888777778888888777 555556666666667888888888888888887655566
Q ss_pred ccccCCCcEEEccCceeeeeccC-CCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCC
Q 036588 181 ISNLTKLEKLDLQYNKLQGTIPY-AGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFL 259 (541)
Q Consensus 181 l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 259 (541)
+..+++|+.|+++++.+....+. +..+++|+.|+++++......+.......+|+.|++++|.+. .++...|..+++|
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L 250 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYL 250 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTC
T ss_pred hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCcccc
Confidence 78888888888888887766553 777888888888887766556655555668888888888774 5666667788888
Q ss_pred cEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCcccccccc-ccccCCCcEEeccCc
Q 036588 260 EELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILY-VGHLLQLQWLDLSDN 338 (541)
Q Consensus 260 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~ 338 (541)
+.|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|+.|++++|.+...... +..+++|++|++++|
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence 8888888887777777777888888888888877766666777777777777777776644433 455666666666666
Q ss_pred ccc
Q 036588 339 QLS 341 (541)
Q Consensus 339 ~~~ 341 (541)
.+.
T Consensus 331 ~l~ 333 (477)
T 2id5_A 331 PLA 333 (477)
T ss_dssp CEE
T ss_pred Ccc
Confidence 543
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-31 Score=258.22 Aligned_cols=308 Identities=19% Similarity=0.136 Sum_probs=175.8
Q ss_pred CCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEee
Q 036588 21 YRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLF 100 (541)
Q Consensus 21 ~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 100 (541)
.++++++++++.++...+..|..+++|++|+++++.+++..+..|.++++|++|++++|.+.+ ++...+.++++|++|+
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCc-CCHHHhcCCCCCCEEE
Confidence 344555555555543333334555555555555555543333445555555555555554422 2222222255555555
Q ss_pred ccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCcc
Q 036588 101 LKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKE 180 (541)
Q Consensus 101 l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 180 (541)
+++|.++...+..+.++++|++ |++++|.+....+..+..+++|+.|++++|.+... .
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~-------------------L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~ 181 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTT-------------------LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---D 181 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCE-------------------EECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---C
T ss_pred CCCCccCcCCHHHhcCCCCCcE-------------------EECCCCccCccChhhccCCCCCCEEECCCCcCCcc---c
Confidence 5555544332233344444444 55666666666566677777777777777776643 3
Q ss_pred ccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCc
Q 036588 181 ISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLE 260 (541)
Q Consensus 181 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 260 (541)
+..+++|+.|+++++.+... ...++|+.|++++|.+... +. ...++|+.|++++|.+.+. ..+..+++|+
T Consensus 182 ~~~l~~L~~L~l~~n~l~~~----~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~ 251 (390)
T 3o6n_A 182 LSLIPSLFHANVSYNLLSTL----AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT---AWLLNYPGLV 251 (390)
T ss_dssp GGGCTTCSEEECCSSCCSEE----ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC---GGGGGCTTCS
T ss_pred cccccccceeeccccccccc----CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc---HHHcCCCCcc
Confidence 55667777777777765532 2345677777777766533 21 2246777777777766432 3356667777
Q ss_pred EEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccc
Q 036588 261 ELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQL 340 (541)
Q Consensus 261 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 340 (541)
.|++++|.+.+..+..+..+++|++|++++|.+.. .+..+..+++|+.|++++|.+......+..+++|+.|++++|.+
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 252 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI 330 (390)
T ss_dssp EEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred EEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCcc
Confidence 77777777666666667777777777777776653 33344556677777777776665444455666666666666665
Q ss_pred cCCCCcccCCCCcceEEEcccCcCc
Q 036588 341 SGSLPSFKFNMPLLQFLDLSSNRLS 365 (541)
Q Consensus 341 ~~~~~~~~~~~~~L~~L~l~~~~~~ 365 (541)
... .+..+++|+.|++++|.+.
T Consensus 331 ~~~---~~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 331 VTL---KLSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CCC---CCCTTCCCSEEECCSSCEE
T ss_pred cee---CchhhccCCEEEcCCCCcc
Confidence 532 1445566666666666554
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1e-30 Score=261.40 Aligned_cols=319 Identities=22% Similarity=0.176 Sum_probs=241.6
Q ss_pred cEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCc
Q 036588 188 EKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNN 267 (541)
Q Consensus 188 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 267 (541)
+.++..+..++..+..+ .++++.|++++|.+....+..+..+++|++|++++|.+. .+....|..+++|+.|++++|
T Consensus 14 ~~v~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSSCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCCC
Confidence 34555555555444433 467888999888888767777888888899988888775 344455688888888888888
Q ss_pred cccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccc-cccccCCCcEEeccCccccCCCCc
Q 036588 268 MFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTIL-YVGHLLQLQWLDLSDNQLSGSLPS 346 (541)
Q Consensus 268 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~ 346 (541)
.+....+..|..+++|++|++++|.+....+..+..+++|+.|++++|.+..... .+..+++|++|++++|.+......
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 8876666678888888888888888876667778888888888888888765544 377788888888888887765556
Q ss_pred ccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCC
Q 036588 347 FKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTK 426 (541)
Q Consensus 347 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 426 (541)
.+..+++|+.|++++|.+. .++...+..+++|+.|++++|...+..+.......+|++|++++|.+.......+..+++
T Consensus 171 ~l~~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 249 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY 249 (477)
T ss_dssp HHTTCTTCCEEEEESCCCC-EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred HhcccCCCcEEeCCCCcCc-EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc
Confidence 6777888888888888876 455556677888888888887766555555555568888888888887666667788888
Q ss_pred CcEEEccccccccccCC-CcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeec
Q 036588 427 LEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLS 505 (541)
Q Consensus 427 L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 505 (541)
|+.|++++|.+....+. +..+++|+.|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|+.|+++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILD 328 (477)
T ss_dssp CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS-CCCGGGBSCGGGCCEEECC
T ss_pred cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc-eeCHhHcCCCcccCEEEcc
Confidence 88888888887755544 667788888888888887777777888888888888888774 4665677778888888888
Q ss_pred cceecc
Q 036588 506 NNMFYG 511 (541)
Q Consensus 506 ~~~~~~ 511 (541)
+|++..
T Consensus 329 ~N~l~c 334 (477)
T 2id5_A 329 SNPLAC 334 (477)
T ss_dssp SSCEEC
T ss_pred CCCccC
Confidence 888763
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-30 Score=255.18 Aligned_cols=381 Identities=19% Similarity=0.168 Sum_probs=287.2
Q ss_pred CcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCccC
Q 036588 31 LNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKI 110 (541)
Q Consensus 31 ~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 110 (541)
..+....+..++++++|++|+++++.+++ +| .+..+++|++|++++|.+.+ +| +.. +++|++|++++|.+++.
T Consensus 28 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~-l~~L~~L~Ls~N~l~~~- 100 (457)
T 3bz5_A 28 FEMQATDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQ-NTNLTYLACDSNKLTNL- 100 (457)
T ss_dssp TTCCTTSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTT-CTTCSEEECCSSCCSCC-
T ss_pred cCcCcccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--ccc-CCCCCEEECcCCCCcee-
Confidence 33443445568899999999999999984 56 79999999999999999844 44 444 99999999999998854
Q ss_pred CccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcEE
Q 036588 111 PSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKL 190 (541)
Q Consensus 111 ~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L 190 (541)
+ ++++++|++ |++++|.+.+. + +..+++|+.|++++|.+... .++.+++|++|
T Consensus 101 ~--~~~l~~L~~-------------------L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L 153 (457)
T 3bz5_A 101 D--VTPLTKLTY-------------------LNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTEL 153 (457)
T ss_dssp C--CTTCTTCCE-------------------EECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEE
T ss_pred e--cCCCCcCCE-------------------EECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEE
Confidence 2 777777777 55555655553 2 78899999999999998853 38889999999
Q ss_pred EccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCcccc
Q 036588 191 DLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFY 270 (541)
Q Consensus 191 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 270 (541)
++++|...... .+..+++|+.|++++|.+.+ ++ +..+++|+.|++++|.+.+. + +..+++|+.|++++|.+.
T Consensus 154 ~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~-~---l~~l~~L~~L~Ls~N~l~ 225 (457)
T 3bz5_A 154 DCHLNKKITKL-DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL-D---LNQNIQLTFLDCSSNKLT 225 (457)
T ss_dssp ECTTCSCCCCC-CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCS
T ss_pred ECCCCCccccc-ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee-c---cccCCCCCEEECcCCccc
Confidence 99999544333 57889999999999999885 33 77889999999999988643 2 578899999999999998
Q ss_pred ccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCC
Q 036588 271 GEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFN 350 (541)
Q Consensus 271 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 350 (541)
+ .| +..+++|+.|++++|.+.... +..+++|+.++++.+ +|+.+++++|.....++ +..
T Consensus 226 ~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n-------------~L~~L~l~~n~~~~~~~--~~~ 284 (457)
T 3bz5_A 226 E-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT-------------DLLEIDLTHNTQLIYFQ--AEG 284 (457)
T ss_dssp C-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC-------------CCSCCCCTTCTTCCEEE--CTT
T ss_pred c-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC-------------CCCEEECCCCccCCccc--ccc
Confidence 6 44 788999999999999988543 456888999988765 45666777776543332 356
Q ss_pred CCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEE
Q 036588 351 MPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKL 430 (541)
Q Consensus 351 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 430 (541)
+++|+.|++++|...+.++. ..++|+.+++ ..+++|++|++++|+++.. .+..+++|+.|
T Consensus 285 l~~L~~L~Ls~n~~l~~l~~----~~~~L~~L~l-------------~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L 344 (457)
T 3bz5_A 285 CRKIKELDVTHNTQLYLLDC----QAAGITELDL-------------SQNPKLVYLYLNNTELTEL---DVSHNTKLKSL 344 (457)
T ss_dssp CTTCCCCCCTTCTTCCEEEC----TTCCCSCCCC-------------TTCTTCCEEECTTCCCSCC---CCTTCTTCSEE
T ss_pred cccCCEEECCCCcccceecc----CCCcceEech-------------hhcccCCEEECCCCccccc---ccccCCcCcEE
Confidence 78888888888875544432 3344544433 3447889999999988764 37888899999
Q ss_pred EccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeecc
Q 036588 431 DLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSN 506 (541)
Q Consensus 431 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 506 (541)
++++|++.+ ++.|..|.+..+.+... +.+..|..+++++|.+.+.+|...+.....+.....+.
T Consensus 345 ~l~~N~l~~-------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~~~~~ 408 (457)
T 3bz5_A 345 SCVNAHIQD-------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGD 408 (457)
T ss_dssp ECCSSCCCB-------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCTTSCCCEEEESS
T ss_pred ECCCCCCCC-------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhcccCceeeccCCC
Confidence 999888764 35666677777665422 34556778889999988888866655555555444443
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-30 Score=247.28 Aligned_cols=307 Identities=24% Similarity=0.303 Sum_probs=184.2
Q ss_pred ccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCc
Q 036588 181 ISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLE 260 (541)
Q Consensus 181 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 260 (541)
+..+++|++|++.++.+... +.+..+++|++|++++|.+.... . +..+++|++|++++|.+.. ++ .+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~-~~~~~~~~L~~L~l~~n~i~~~~-~-~~~l~~L~~L~L~~n~i~~-~~--~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI-QGIEYLTNLEYLNLNGNQITDIS-P-LSNLVKLTNLYIGTNKITD-IS--ALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCC-CG--GGTTCTTCS
T ss_pred chhcccccEEEEeCCccccc-hhhhhcCCccEEEccCCccccch-h-hhcCCcCCEEEccCCcccC-ch--HHcCCCcCC
Confidence 34556666666666665533 33555666666666666554322 2 4555555555555555432 11 234445555
Q ss_pred EEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccc
Q 036588 261 ELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQL 340 (541)
Q Consensus 261 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 340 (541)
+|++++|.+ ....+ +..+++|+.|++++|........+..+++|++|++++|.+
T Consensus 114 ~L~l~~n~i------------------------~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~ 167 (347)
T 4fmz_A 114 ELYLNEDNI------------------------SDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV 167 (347)
T ss_dssp EEECTTSCC------------------------CCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCC
T ss_pred EEECcCCcc------------------------cCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCc
Confidence 555555444 32211 4444555555555543333333344555555555555544
Q ss_pred cCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchh
Q 036588 341 SGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKE 420 (541)
Q Consensus 341 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 420 (541)
..... +..+++|++|++++|.+. .++. +..+++|+.+++.+|.+.+..+ +..+++|++|++++|.+....+
T Consensus 168 ~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 168 KDVTP--IANLTDLYSLSLNYNQIE-DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp CCCGG--GGGCTTCSEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred CCchh--hccCCCCCEEEccCCccc-cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--
Confidence 42221 445566666666666654 2222 4466777777777776653322 6667777777777777765433
Q ss_pred hhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccc
Q 036588 421 ISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLE 500 (541)
Q Consensus 421 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 500 (541)
+..+++|++|++++|.+... +.+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+ ..+..+++|+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~ 314 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDM-EVIGGLTNLT 314 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGH-HHHHTCTTCS
T ss_pred hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcCh-hHhhccccCC
Confidence 66777777888877776643 4466777888888888877643 356778888888888888854333 6677788888
Q ss_pred eeeeccceecccCCCCCCCccccceEEeeccccc
Q 036588 501 ELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFS 534 (541)
Q Consensus 501 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 534 (541)
.|++++|++.+..| +..+++|+.|++++|++.
T Consensus 315 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 315 TLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 88888888886544 778888888888888875
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-30 Score=264.88 Aligned_cols=309 Identities=19% Similarity=0.136 Sum_probs=202.5
Q ss_pred CCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEee
Q 036588 21 YRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLF 100 (541)
Q Consensus 21 ~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 100 (541)
.+++.++++++.++...+..|+.+++|++|++++|.+++..|..|.++++|++|++++|.+.+ ++...+.++++|++|+
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCCCEEE
Confidence 355666666666665444455666666666666666665555566666666666666666633 3333333366666666
Q ss_pred ccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCcc
Q 036588 101 LKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKE 180 (541)
Q Consensus 101 l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 180 (541)
+++|.++...+..|+++++|++ |++++|.+.+..+..+..+++|+.|++++|.+... .
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~-------------------L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~ 187 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTT-------------------LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---D 187 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCE-------------------EECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---C
T ss_pred eeCCCCCCCCHHHhccCCCCCE-------------------EEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---C
Confidence 6666666444444566666655 56666666666666778888888888888877643 3
Q ss_pred ccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCc
Q 036588 181 ISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLE 260 (541)
Q Consensus 181 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 260 (541)
+..+++|+.|++++|.+... ...++|+.|++++|.+....+. ..++|+.|++++|.+.+. ..+..+++|+
T Consensus 188 ~~~l~~L~~L~l~~n~l~~l----~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~---~~l~~l~~L~ 257 (597)
T 3oja_B 188 LSLIPSLFHANVSYNLLSTL----AIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT---AWLLNYPGLV 257 (597)
T ss_dssp GGGCTTCSEEECCSSCCSEE----ECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC---GGGGGCTTCS
T ss_pred hhhhhhhhhhhcccCccccc----cCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC---hhhccCCCCC
Confidence 55677888888887766543 3445788888888776533222 135788888888776532 3456777888
Q ss_pred EEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccc
Q 036588 261 ELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQL 340 (541)
Q Consensus 261 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 340 (541)
.|++++|.+.+..+..+..+++|+.|++++|.+.. ++..+..+++|+.|++++|.+......+..+++|+.|++++|.+
T Consensus 258 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 258 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp EEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred EEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCC
Confidence 88888877777777777777888888888777763 34445567777777777777765555566677777777777776
Q ss_pred cCCCCcccCCCCcceEEEcccCcCcC
Q 036588 341 SGSLPSFKFNMPLLQFLDLSSNRLSV 366 (541)
Q Consensus 341 ~~~~~~~~~~~~~L~~L~l~~~~~~~ 366 (541)
... .+..+++|+.|++++|.+.+
T Consensus 337 ~~~---~~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 337 VTL---KLSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CCC---CCCTTCCCSEEECCSSCEEH
T ss_pred CCc---ChhhcCCCCEEEeeCCCCCC
Confidence 533 24456677777777776653
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-29 Score=239.50 Aligned_cols=299 Identities=23% Similarity=0.279 Sum_probs=145.8
Q ss_pred ceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCC
Q 036588 139 WQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDN 218 (541)
Q Consensus 139 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 218 (541)
|+.|+++++.+... + .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+... +.+..+++|++|++++|
T Consensus 46 L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~-~~~~~l~~L~~L~l~~n 120 (347)
T 4fmz_A 46 ITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI-SALQNLTNLRELYLNED 120 (347)
T ss_dssp CSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC-GGGTTCTTCSEEECTTS
T ss_pred ccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc-hHHcCCCcCCEEECcCC
Confidence 33345545544432 2 355566666666666655532 22 55566666666666655432 33555556666666555
Q ss_pred cccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCcc
Q 036588 219 QLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIP 298 (541)
Q Consensus 219 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 298 (541)
.+... +. +..+++|++|++++|......+. +..+++|+.|++.++.+....+ +..+++|++|++++|.+....+
T Consensus 121 ~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~ 194 (347)
T 4fmz_A 121 NISDI-SP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP 194 (347)
T ss_dssp CCCCC-GG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG
T ss_pred cccCc-hh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc
Confidence 55422 11 44555555555555533222221 3455555555555554432221 4445555555555554442211
Q ss_pred ccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCC
Q 036588 299 KEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPF 378 (541)
Q Consensus 299 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 378 (541)
+..+++|+.+++++|.+..... +.. +++|++|++++|.++ ..+. +..+++
T Consensus 195 --~~~l~~L~~L~l~~n~l~~~~~-~~~------------------------~~~L~~L~l~~n~l~-~~~~--~~~l~~ 244 (347)
T 4fmz_A 195 --LASLTSLHYFTAYVNQITDITP-VAN------------------------MTRLNSLKIGNNKIT-DLSP--LANLSQ 244 (347)
T ss_dssp --GGGCTTCCEEECCSSCCCCCGG-GGG------------------------CTTCCEEECCSSCCC-CCGG--GTTCTT
T ss_pred --ccCCCccceeecccCCCCCCch-hhc------------------------CCcCCEEEccCCccC-CCcc--hhcCCC
Confidence 4444555555555544432222 344 444444444444443 1211 334555
Q ss_pred ccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccC
Q 036588 379 LEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSD 457 (541)
Q Consensus 379 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~ 457 (541)
|++|++++|.+.+. ..+..+++|++|++++|.+... ..+..+++|+.|++++|++....+. +..+++|+.|++++
T Consensus 245 L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 320 (347)
T 4fmz_A 245 LTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320 (347)
T ss_dssp CCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCS
T ss_pred CCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccC
Confidence 55555555544321 2344555555555555555432 2345555555555555555433322 44455566666666
Q ss_pred CcCCCCCCccccCCCCccEeeCCCCcc
Q 036588 458 NQLSGSLPSFKFKMPLLQFLDLSSNRL 484 (541)
Q Consensus 458 ~~~~~~~~~~~~~~~~L~~L~l~~~~~ 484 (541)
|.+....+ +..+++|++|++++|++
T Consensus 321 n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 321 NHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp SSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred CccccccC--hhhhhccceeehhhhcc
Confidence 65554333 55566666666666665
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=246.52 Aligned_cols=308 Identities=23% Similarity=0.185 Sum_probs=194.7
Q ss_pred CCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeeecc-CCCCcCCCCEEECCCCcccCCCCcccCCCCCccEE
Q 036588 159 NCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIP-YAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFL 237 (541)
Q Consensus 159 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 237 (541)
.+++++.+++.++.+....+..+..+++|++|+++++.+.+..+ .+..+++|++|++++|.+....+..+..+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 45889999999998885555557888999999999998887765 47889999999999999887777778889999999
Q ss_pred eccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCcc
Q 036588 238 DLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRL 317 (541)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 317 (541)
++++|.+. .++...|..+++|++|++++|.+....+..+..+++|++|++++|.+... .+..+++|+.+++++|.+
T Consensus 123 ~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 123 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred ECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 99999885 67777778889999999999888877777788888899999988887644 245677888888888765
Q ss_pred ccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCC
Q 036588 318 QGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDT 397 (541)
Q Consensus 318 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 397 (541)
... ...++|+.|++++|.+..... ...++|+.|++++|.+++ . ..+..+++|++|++++|.+.+..+..+
T Consensus 199 ~~~----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 199 STL----AIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTD-T--AWLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp SEE----ECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred ccc----CCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCcc-c--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence 432 234566677776666553211 123455555555555542 1 223344555555555554443334444
Q ss_pred cCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEe
Q 036588 398 QNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFL 477 (541)
Q Consensus 398 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 477 (541)
..+++|++|++++|++.. .+..+..+++|+.|++++|++....+.+..+++|+.|++++|.+... + +..+++|++|
T Consensus 269 ~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L 344 (390)
T 3o6n_A 269 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNL 344 (390)
T ss_dssp TTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEE
T ss_pred cccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCcccee-C--chhhccCCEE
Confidence 444444444444444442 22223334444444444444433222233344444444444444321 1 2334444444
Q ss_pred eCCCCcc
Q 036588 478 DLSSNRL 484 (541)
Q Consensus 478 ~l~~~~~ 484 (541)
++++|++
T Consensus 345 ~l~~N~~ 351 (390)
T 3o6n_A 345 TLSHNDW 351 (390)
T ss_dssp ECCSSCE
T ss_pred EcCCCCc
Confidence 4444444
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=252.50 Aligned_cols=309 Identities=23% Similarity=0.194 Sum_probs=213.4
Q ss_pred CCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeeecc-CCCCcCCCCEEECCCCcccCCCCcccCCCCCccEE
Q 036588 159 NCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIP-YAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFL 237 (541)
Q Consensus 159 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 237 (541)
.+++++.+++.++.+....+..+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+....+..+..+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 35788999999998886555667889999999999999887766 58889999999999999887777778889999999
Q ss_pred eccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCcc
Q 036588 238 DLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRL 317 (541)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 317 (541)
++++|.+. .++...|..+++|+.|++++|.+....+..+..+++|++|++++|.+... .+..+++|+.+++++|.+
T Consensus 129 ~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence 99999885 67777778899999999999988888888888899999999999887754 245678888888888866
Q ss_pred ccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCC
Q 036588 318 QGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDT 397 (541)
Q Consensus 318 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 397 (541)
.. +...++|+.|++++|.+...... ..++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+..+
T Consensus 205 ~~----l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 205 ST----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp SE----EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cc----ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCCCCHHHh
Confidence 53 23445677777777766532221 124666666666666531 234455666666666666555555555
Q ss_pred cCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEe
Q 036588 398 QNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFL 477 (541)
Q Consensus 398 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 477 (541)
..+++|++|++++|.+.. .+..+..+++|+.|++++|.+....+.+..+++|+.|++++|.+... + +..+++|+.|
T Consensus 275 ~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L 350 (597)
T 3oja_B 275 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNL 350 (597)
T ss_dssp TTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEE
T ss_pred cCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEE
Confidence 556666666666665553 23334445556666666655553333344555555555555555432 1 3445555555
Q ss_pred eCCCCccc
Q 036588 478 DLSSNRLS 485 (541)
Q Consensus 478 ~l~~~~~~ 485 (541)
++++|++.
T Consensus 351 ~l~~N~~~ 358 (597)
T 3oja_B 351 TLSHNDWD 358 (597)
T ss_dssp ECCSSCEE
T ss_pred EeeCCCCC
Confidence 55555553
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-31 Score=264.29 Aligned_cols=377 Identities=19% Similarity=0.095 Sum_probs=212.0
Q ss_pred CCCeEEEEecCCcceeeeCCc-ccCCCCCcEecccccccCCc----cchhhhhcCCCcEEEeecCccCCCCChhhhhhcC
Q 036588 20 TYRVTALNISGLNLTVTIPSE-LGNLSSLQTLDLSFNWFSGS----IPASIFNMSSLLSINFINNALFGELPPNFCNHLS 94 (541)
Q Consensus 20 ~~~l~~L~l~~~~i~~~~~~~-~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 94 (541)
.+++++|+++++.++...... +..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..++..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 357999999999998544433 78899999999999998743 4677888899999999999886555666666676
Q ss_pred ----CCcEeeccccccCc----cCCccCCCCCCCcEEecCCCcccc----------ccccCcceEEEecCccccccC---
Q 036588 95 ----NLESLFLKSNMFHG----KIPSTLSSCKRLRETSLSLNDFFW----------DHTKRNWQQLYLSKNMFYGEI--- 153 (541)
Q Consensus 95 ----~L~~L~l~~~~~~~----~~~~~~~~l~~L~~l~~~~~~~~~----------~~~~~~L~~L~l~~~~~~~~~--- 153 (541)
+|++|++++|.++. .++..+.++++|++|+++++.+.. ....++|++|++++|.+.+..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 79999999999885 347788899999997777776531 111234555555555544321
Q ss_pred -CccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeeeccCC-CCcCCCCEEECCCCcccCC----CCcc
Q 036588 154 -PSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA-GHLYQLQWLDLSDNQLSGS----LPSF 227 (541)
Q Consensus 154 -~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~----~~~~ 227 (541)
+..+..+++|++|++++|.+.+..+..+.. .+ ...++|+.|++++|.+... ++..
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-------------------~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQ-------------------GLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHH-------------------HHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHH-------------------HHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 223334455555555555444322222221 00 1123444455544444321 2233
Q ss_pred cCCCCCccEEeccCCcccCcCC----hhhhccCCCCcEEEecCcccccc----CCCCCcCcccccEEEecccccCCCccc
Q 036588 228 KFKMPLLQFLDLSSNRLSAELP----TNVFHNLPFLEELYLSNNMFYGE----IPSDTANCSYLRILVLRFNNFSGAIPK 299 (541)
Q Consensus 228 ~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~ 299 (541)
+..+++|++|++++|.+.+... ...+..+++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+.
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 3344555555555554422111 11222345555555555554432 233344455566666655554432222
Q ss_pred cccc-----cCCccEEEeeCCcccccc-----ccccccCCCcEEeccCccccCCCCccc----C-CCCcceEEEcccCcC
Q 036588 300 EISN-----LTKLEKLDLQYNRLQGTI-----LYVGHLLQLQWLDLSDNQLSGSLPSFK----F-NMPLLQFLDLSSNRL 364 (541)
Q Consensus 300 ~l~~-----l~~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~~~~----~-~~~~L~~L~l~~~~~ 364 (541)
.+.. .++|+.|++++|.+.... ..+..+++|++|++++|.+.......+ . ..++|++|++++|.+
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 2221 245666666666554321 123445666666666665543211111 1 256777777777776
Q ss_pred cCc---CChhhhcCCCCccEEEccCcccccCCCc----CC-cCCccCCeEEcccCCCCC
Q 036588 365 SVE---LPTNVFHNLPFLEELYLSNNMFYGEIPS----DT-QNCSYLRILVLKFNNFPG 415 (541)
Q Consensus 365 ~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~-~~~~~L~~L~l~~~~~~~ 415 (541)
++. .....+..+++|++|++++|++.+.... .+ .....|+.|.+.++....
T Consensus 383 ~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 383 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp CHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred ChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 531 1222344677888888888776532111 11 123467777777766554
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-27 Score=222.86 Aligned_cols=289 Identities=22% Similarity=0.241 Sum_probs=179.9
Q ss_pred CCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEe
Q 036588 209 QLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVL 288 (541)
Q Consensus 209 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 288 (541)
+++.++++++.+. .+|..+ .++++.|+++++.+. .++...|..+++|++|++++|.+....+..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~--~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC--CTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC--CCCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 5666666666654 233322 245666666666553 333334455556666666655555444555555555555555
Q ss_pred cccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcC-c
Q 036588 289 RFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSV-E 367 (541)
Q Consensus 289 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~ 367 (541)
++|.+.. .+..+. ++|++|++++|.+....+..+..+++|+.|++++|.+.. .
T Consensus 108 s~n~l~~-l~~~~~-------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 161 (330)
T 1xku_A 108 SKNQLKE-LPEKMP-------------------------KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 161 (330)
T ss_dssp CSSCCSB-CCSSCC-------------------------TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG
T ss_pred CCCcCCc-cChhhc-------------------------ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC
Confidence 5555442 222111 345555555554443434445556666666666665531 1
Q ss_pred CChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccC-CCcc
Q 036588 368 LPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIP-YAGH 446 (541)
Q Consensus 368 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~ 446 (541)
.....+..+++|+.|++.+|.+.. ++..+. ++|++|++++|.+....+..+..+++|+.|++++|.+....+ .+..
T Consensus 162 ~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 238 (330)
T 1xku_A 162 IENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238 (330)
T ss_dssp BCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred cChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence 333445567777777777777652 333222 678888888888777667778888888888888888776555 3667
Q ss_pred cCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccC------Ccccceeeeccceecc--cCCCCCC
Q 036588 447 LFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHN------LPFLEELYLSNNMFYG--EIPSDTP 518 (541)
Q Consensus 447 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~~--~~~~~~~ 518 (541)
+++|+.|++++|.+. .+|..+..+++|++|++++|++.+ ++...+.. .+.++.+++.+|++.. ..|..|.
T Consensus 239 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~-~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~ 316 (330)
T 1xku_A 239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA-IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316 (330)
T ss_dssp STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC-CCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc-cChhhcCCcccccccccccceEeecCcccccccCccccc
Confidence 788888888888877 666777888888888888888843 54444432 3678889999998863 5667888
Q ss_pred CccccceEEeeccc
Q 036588 519 NCSYLRILVVQFNN 532 (541)
Q Consensus 519 ~~~~L~~L~l~~~~ 532 (541)
.+++++.+++++|+
T Consensus 317 ~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 317 CVYVRAAVQLGNYK 330 (330)
T ss_dssp TCCCGGGEEC----
T ss_pred cccceeEEEecccC
Confidence 88999999998874
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=225.18 Aligned_cols=268 Identities=24% Similarity=0.213 Sum_probs=166.8
Q ss_pred CCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEecc
Q 036588 257 PFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLS 336 (541)
Q Consensus 257 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 336 (541)
++++.|+++++.+....+..|..+++|++|++++|.+....+..+..+++|++|++++|.+......+. ++|++|+++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECC
Confidence 344555555555444444455555555555555555554444455555555555555555543222222 566666666
Q ss_pred CccccCCCCcccCCCCcceEEEcccCcCcC-cCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCC
Q 036588 337 DNQLSGSLPSFKFNMPLLQFLDLSSNRLSV-ELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPG 415 (541)
Q Consensus 337 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 415 (541)
+|.+.......+..+++|+.|++++|.++. ......+..+ +|+.|++++|.+.+ ++..+. ++|++|++++|.+..
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~ 207 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQA 207 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCC
T ss_pred CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCc
Confidence 666654444556666667777776666541 1333344444 67777777777653 333222 677777777777776
Q ss_pred ccchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCccccc
Q 036588 416 AIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFH 494 (541)
Q Consensus 416 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 494 (541)
..+..+..+++|+.|++++|.+....+. +..+++|+.|++++|.+. .+|..+..+++|++|++++|++.+ ++...+.
T Consensus 208 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~-~~~~~~~ 285 (332)
T 2ft3_A 208 IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK-VGVNDFC 285 (332)
T ss_dssp CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCB-CCTTSSS
T ss_pred cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCc-cChhHcc
Confidence 6666777777777777777777655543 666778888888888777 566667788888888888888743 4444444
Q ss_pred C------Ccccceeeeccceec--ccCCCCCCCccccceEEeeccc
Q 036588 495 N------LPFLEELYLSNNMFY--GEIPSDTPNCSYLRILVVQFNN 532 (541)
Q Consensus 495 ~------~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~ 532 (541)
. .++|+.+++.+|++. +..+..|..+++|+.+++++|.
T Consensus 286 ~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 3 366888888888877 5677778888889988888874
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.4e-30 Score=261.92 Aligned_cols=391 Identities=15% Similarity=0.081 Sum_probs=219.7
Q ss_pred CcceEEEecCccccccCCccccC-CCC-ccEEEeccCcc-cc-cCCccccccCCCcEEEccCceeeeec----c-CCCCc
Q 036588 137 RNWQQLYLSKNMFYGEIPSDIAN-CSY-LRILVLQFNNF-SG-AIPKEISNLTKLEKLDLQYNKLQGTI----P-YAGHL 207 (541)
Q Consensus 137 ~~L~~L~l~~~~~~~~~~~~~~~-~~~-L~~L~l~~~~i-~~-~~~~~l~~l~~L~~L~l~~~~~~~~~----~-~~~~~ 207 (541)
++|++|+++++.+.+.....+.. +++ |++|++.+|.. .. .++.....+++|++|++++|.+.+.. . ....+
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 191 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC
Confidence 34444555555444333333332 223 66666665541 11 11111234566666666666554321 1 12445
Q ss_pred CCCCEEECCCCcccC----CCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCcccc---ccCCCCCcCc
Q 036588 208 YQLQWLDLSDNQLSG----SLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFY---GEIPSDTANC 280 (541)
Q Consensus 208 ~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~ 280 (541)
++|++|+++++.+.. .++..+..+++|++|++++|.+.+ ++ ..+..+++|+.|.+...... ......+..+
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HH-HHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 666666666665541 122233456677777777766532 22 44566677777777643211 1233445666
Q ss_pred ccccEEEecccccCCCccccccccCCccEEEeeCCcccccccc--ccccCCCcEEeccCccccCCCCcccCCCCcceEEE
Q 036588 281 SYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILY--VGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLD 358 (541)
Q Consensus 281 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 358 (541)
++|+.+.++++.. ...+..+..+++|++|++++|.+...... +..+++|++|++.++.....+......+++|++|+
T Consensus 270 ~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 348 (592)
T 3ogk_B 270 RKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLR 348 (592)
T ss_dssp TTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEE
T ss_pred ccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEE
Confidence 7777777766432 24455566677777777777764432221 46677777777774322222333334567788887
Q ss_pred ccc-----------CcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCc-CCccCCeEEcc----cCCCCCc-----c
Q 036588 359 LSS-----------NRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQ-NCSYLRILVLK----FNNFPGA-----I 417 (541)
Q Consensus 359 l~~-----------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~----~~~~~~~-----~ 417 (541)
+++ +.+++.........+++|++|++..+.+++.....+. .+++|++|+++ .+.+++. .
T Consensus 349 L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~ 428 (592)
T 3ogk_B 349 IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGV 428 (592)
T ss_dssp EECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHH
T ss_pred eecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHH
Confidence 773 3343222333445678888888866665543333333 37788888885 3344432 2
Q ss_pred chhhhccCCCcEEEccccc--cccccC-C-CcccCCcceEeccCCcCCC-CCCccccCCCCccEeeCCCCccccccCccc
Q 036588 418 PKEISNLTKLEKLDLQYNR--LQGTIP-Y-AGHLFQLQWLDLSDNQLSG-SLPSFKFKMPLLQFLDLSSNRLSTELPTNV 492 (541)
Q Consensus 418 ~~~l~~~~~L~~L~l~~~~--~~~~~~-~-~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 492 (541)
+..+..+++|+.|+++.|. +.+... . ...+++|+.|++++|.+++ ..+..+..+++|++|++++|.+.+......
T Consensus 429 ~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 508 (592)
T 3ogk_B 429 RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAA 508 (592)
T ss_dssp HHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHH
T ss_pred HHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHH
Confidence 3345668888888887654 222111 1 2346788888888887764 233445677888888888888643322234
Q ss_pred ccCCcccceeeeccceecccCCCCCC-CccccceEEeec
Q 036588 493 FHNLPFLEELYLSNNMFYGEIPSDTP-NCSYLRILVVQF 530 (541)
Q Consensus 493 ~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~ 530 (541)
...+++|+.|++++|++++.....++ .+|.+....+..
T Consensus 509 ~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 509 VTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp HHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred HHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 45678888888888887766444443 456666655544
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=225.18 Aligned_cols=250 Identities=22% Similarity=0.282 Sum_probs=185.6
Q ss_pred CCCCCccccceeeeC--------CCCCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEE
Q 036588 3 NTSSSVCNWTGITCD--------VRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSI 74 (541)
Q Consensus 3 ~~~~~~~~~~~~~~~--------~~~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 74 (541)
+....+|.|.|+.|. ....++++|+++++.++ .+|..+.++++|++|++++|.++ .+|..+.++++|++|
T Consensus 55 ~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L 132 (328)
T 4fcg_A 55 SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETL 132 (328)
T ss_dssp TTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEE
T ss_pred cccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEE
Confidence 456789999999984 23578999999999999 67888999999999999999998 899999999999999
Q ss_pred EeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCC
Q 036588 75 NFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIP 154 (541)
Q Consensus 75 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 154 (541)
++++|.+. .+|..+.. +++|++|++++|.+.+.+|..+... ...
T Consensus 133 ~Ls~n~l~-~lp~~l~~-l~~L~~L~L~~n~~~~~~p~~~~~~----------------------------------~~~ 176 (328)
T 4fcg_A 133 TLARNPLR-ALPASIAS-LNRLRELSIRACPELTELPEPLAST----------------------------------DAS 176 (328)
T ss_dssp EEESCCCC-CCCGGGGG-CTTCCEEEEEEETTCCCCCSCSEEE----------------------------------C-C
T ss_pred ECCCCccc-cCcHHHhc-CcCCCEEECCCCCCccccChhHhhc----------------------------------cch
Confidence 99999985 88888777 9999999999987776666655421 112
Q ss_pred ccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCc
Q 036588 155 SDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLL 234 (541)
Q Consensus 155 ~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 234 (541)
..+..+++|++|++++|.+. .+|..++.+++|++|++++|.+.+..+.+..+++|++|++++|.+.+..+..+..+++|
T Consensus 177 ~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 255 (328)
T 4fcg_A 177 GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255 (328)
T ss_dssp CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence 23556677777777777766 56666777777777777777776655556667777777777777666666666667777
Q ss_pred cEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccc
Q 036588 235 QFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNN 292 (541)
Q Consensus 235 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 292 (541)
++|++++|.+.+.++.. +..+++|+.|++++|++.+..|..+..+++++.+.+..+.
T Consensus 256 ~~L~L~~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 256 KRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp CEEECTTCTTCCBCCTT-GGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred CEEECCCCCchhhcchh-hhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 77777776655555544 3566666666666666666666666666666666665443
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-26 Score=216.89 Aligned_cols=290 Identities=21% Similarity=0.209 Sum_probs=197.7
Q ss_pred CCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEe
Q 036588 185 TKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYL 264 (541)
Q Consensus 185 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 264 (541)
.+++.++++++.+...+..+ .++++.|++++|.+....+..+..+++|++|++++|.+.+ +....|..+++|++|++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK-ISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC-BCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCccccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCe-eCHHHhcCCCCCCEEEC
Confidence 47899999998887655444 4789999999999987777788999999999999999864 44455689999999999
Q ss_pred cCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccc---cccccccCCCcEEeccCcccc
Q 036588 265 SNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGT---ILYVGHLLQLQWLDLSDNQLS 341 (541)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~ 341 (541)
++|.+. ..+..+. ++|++|++++|.+....+..+..+++|+.|++++|.+... ...+..+++|++|++++|.+.
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 999987 4444443 7899999999999877777788899999999999887531 122555566666666665554
Q ss_pred CCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhh
Q 036588 342 GSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEI 421 (541)
Q Consensus 342 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 421 (541)
. ++... .++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+
T Consensus 185 ~-------------------------l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 236 (330)
T 1xku_A 185 T-------------------------IPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236 (330)
T ss_dssp S-------------------------CCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG
T ss_pred c-------------------------CCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhc
Confidence 2 22221 1455555555555544444455556666666666666655555556
Q ss_pred hccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCcccc------CCCCccEeeCCCCcccc-ccCccccc
Q 036588 422 SNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKF------KMPLLQFLDLSSNRLST-ELPTNVFH 494 (541)
Q Consensus 422 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------~~~~L~~L~l~~~~~~~-~~~~~~~~ 494 (541)
..+++|++|++++|++......+..+++|+.|++++|.+....+..+. ..+.++.|++++|++.. .++...+.
T Consensus 237 ~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~ 316 (330)
T 1xku_A 237 ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316 (330)
T ss_dssp GGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred cCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccc
Confidence 666666666666666654434455666666777776666654444443 23678888888887732 24445677
Q ss_pred CCcccceeeeccce
Q 036588 495 NLPFLEELYLSNNM 508 (541)
Q Consensus 495 ~~~~L~~L~l~~~~ 508 (541)
.+++++.+++++|+
T Consensus 317 ~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 317 CVYVRAAVQLGNYK 330 (330)
T ss_dssp TCCCGGGEEC----
T ss_pred cccceeEEEecccC
Confidence 78888888888764
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.7e-27 Score=221.02 Aligned_cols=265 Identities=21% Similarity=0.261 Sum_probs=157.4
Q ss_pred CeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeec
Q 036588 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFL 101 (541)
Q Consensus 22 ~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 101 (541)
++++++++++.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+.+..|..+.. +++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP-LRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTT-CTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhC-cCCCCEEEC
Confidence 3555555555555 3344332 45566666665555444445555555666666555553333333333 555555555
Q ss_pred cccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccc--cCCc
Q 036588 102 KSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSG--AIPK 179 (541)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~--~~~~ 179 (541)
++|.++ .+|..+. ++|++|++++|.+....+..+..+++|+.|++++|.+.. ..+.
T Consensus 110 ~~n~l~-~l~~~~~---------------------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 167 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP---------------------SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG 167 (332)
T ss_dssp CSSCCC-SCCSSCC---------------------TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT
T ss_pred CCCcCC-ccCcccc---------------------ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcc
Confidence 555554 2222221 345556666777766656667788888888888887753 4555
Q ss_pred cccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCC
Q 036588 180 EISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFL 259 (541)
Q Consensus 180 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 259 (541)
.+..+ +|++|++++|.+...+..+. ++|+.|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|
T Consensus 168 ~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L 243 (332)
T 2ft3_A 168 AFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTL 243 (332)
T ss_dssp SSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC-CCCTTGGGGCTTC
T ss_pred cccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC-cCChhHhhCCCCC
Confidence 66666 78888888777765444332 67777777777777666566777777777777777764 3344445666777
Q ss_pred cEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccc------cCCccEEEeeCCcc
Q 036588 260 EELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISN------LTKLEKLDLQYNRL 317 (541)
Q Consensus 260 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~------l~~L~~L~l~~~~~ 317 (541)
+.|++++|.+. ..|..+..+++|+.|++++|.+....+..+.. .++|+.+++.+|.+
T Consensus 244 ~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 244 RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred CEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence 77777777665 55556666677777777776666444333322 23455555555543
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=222.59 Aligned_cols=248 Identities=30% Similarity=0.433 Sum_probs=190.8
Q ss_pred CCCcEecccccccCC--ccchhhhhcCCCcEEEeec-CccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCc
Q 036588 45 SSLQTLDLSFNWFSG--SIPASIFNMSSLLSINFIN-NALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLR 121 (541)
Q Consensus 45 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 121 (541)
.+++.|+++++.+++ .+|..+.++++|++|++++ |.+.+.+|..+.. +++|++|++++|.+.+..|..+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc-CCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 579999999999998 8999999999999999995 8887888988877 99999999999999888888888888888
Q ss_pred EEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccC-CCcEEEccCceeeee
Q 036588 122 ETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLT-KLEKLDLQYNKLQGT 200 (541)
Q Consensus 122 ~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~-~L~~L~l~~~~~~~~ 200 (541)
+ |++++|.+.+..+..+..+++|++|++++|.+....|..++.++ .|++|++++|.+.+.
T Consensus 129 ~-------------------L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~ 189 (313)
T 1ogq_A 129 T-------------------LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189 (313)
T ss_dssp E-------------------EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE
T ss_pred E-------------------EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc
Confidence 8 56666777777888899999999999999999888888898887 899999999988855
Q ss_pred ccC-CCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcC
Q 036588 201 IPY-AGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTAN 279 (541)
Q Consensus 201 ~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 279 (541)
.+. +..++ |+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+.+..|..+..
T Consensus 190 ~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 266 (313)
T 1ogq_A 190 IPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQ 266 (313)
T ss_dssp CCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG--CCCCTTCCEEECCSSCCEECCCGGGGG
T ss_pred CChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc--ccccCCCCEEECcCCcccCcCChHHhc
Confidence 444 55565 88888888888777777777788888888888777543332 455566666666666666555666666
Q ss_pred cccccEEEecccccCCCccccccccCCccEEEeeCCc
Q 036588 280 CSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNR 316 (541)
Q Consensus 280 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 316 (541)
+++|++|++++|.+....|.. ..+++|+.+++.+|.
T Consensus 267 l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 267 LKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred CcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 666666666666555444432 445555555555554
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-29 Score=261.19 Aligned_cols=448 Identities=15% Similarity=0.073 Sum_probs=220.4
Q ss_pred CCccccceeeeCCCCCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccC---Cccc------------hhhhhcCC
Q 036588 6 SSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFS---GSIP------------ASIFNMSS 70 (541)
Q Consensus 6 ~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~------------~~~~~l~~ 70 (541)
..+++|.++.+..+ +.+.+.++ .....+..+..+++|++|+++++... +.+| .....+++
T Consensus 39 ~vck~W~~~~~~~~----~~l~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 113 (592)
T 3ogk_B 39 LVCRRWFKIDSETR----EHVTMALC-YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQ 113 (592)
T ss_dssp TSCHHHHHHHHHHC----CEEEESCG-GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTT
T ss_pred HHhHHHHHhhhccc----cEEEEeec-cccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCC
Confidence 34558887754321 23334333 22234455677888888888764321 1111 12236788
Q ss_pred CcEEEeecCccCCCCChhhhhhcCC-CcEeecccccc-Cc-cCCccCCCCCCCcEEecCCCccc---------cccccCc
Q 036588 71 LLSINFINNALFGELPPNFCNHLSN-LESLFLKSNMF-HG-KIPSTLSSCKRLRETSLSLNDFF---------WDHTKRN 138 (541)
Q Consensus 71 L~~L~l~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~-~~-~~~~~~~~l~~L~~l~~~~~~~~---------~~~~~~~ 138 (541)
|++|++++|.+.+..+..+...+++ |++|++++|.. .. .++.....+++|++|+++++.+. ....+++
T Consensus 114 L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~ 193 (592)
T 3ogk_B 114 LKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTS 193 (592)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCC
T ss_pred CCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCC
Confidence 8888888887655455555553455 88888877752 11 12223346777777766666432 1123355
Q ss_pred ceEEEecCcccc----ccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceee----eeccCCCCcCCC
Q 036588 139 WQQLYLSKNMFY----GEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQ----GTIPYAGHLYQL 210 (541)
Q Consensus 139 L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~----~~~~~~~~~~~L 210 (541)
|+.|+++++.+. ..++..+..+++|+.|++.+|.+. .++..+..+++|++|+++..... .....+..+++|
T Consensus 194 L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L 272 (592)
T 3ogk_B 194 LEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKL 272 (592)
T ss_dssp CCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTC
T ss_pred ccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccc
Confidence 555666555554 122233445566666666666554 24455555666666666542111 011223444555
Q ss_pred CEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecc
Q 036588 211 QWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRF 290 (541)
Q Consensus 211 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 290 (541)
+.+.+.+... ..++..+..+++|++|++++|.+........+..+++|+.|++.++......+.....+++|++|++++
T Consensus 273 ~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 273 CRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER 351 (592)
T ss_dssp CEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred cccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeec
Confidence 5555544321 133344444555555555555432222222334455555555542211111111122344444444442
Q ss_pred -----------cccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccC-CCCcceEEE
Q 036588 291 -----------NNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKF-NMPLLQFLD 358 (541)
Q Consensus 291 -----------~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~ 358 (541)
+.++...... ....+++|++|++..+.+.......+. .+++|+.|+
T Consensus 352 g~~~~~~~~~~~~~~~~~~~~----------------------l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~ 409 (592)
T 3ogk_B 352 GADEQGMEDEEGLVSQRGLIA----------------------LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFR 409 (592)
T ss_dssp CCCSSTTSSTTCCCCHHHHHH----------------------HHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEE
T ss_pred CccccccccccCccCHHHHHH----------------------HHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEE
Confidence 1121111111 022344555555433333321111111 245555555
Q ss_pred cc----cCcCcCc----CChhhhcCCCCccEEEccCcc--cccCCCcCC-cCCccCCeEEcccCCCCCc-cchhhhccCC
Q 036588 359 LS----SNRLSVE----LPTNVFHNLPFLEELYLSNNM--FYGEIPSDT-QNCSYLRILVLKFNNFPGA-IPKEISNLTK 426 (541)
Q Consensus 359 l~----~~~~~~~----~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~ 426 (541)
++ .+.+++. .....+..+++|+.|++..|. +++.....+ ..+++|++|++++|++++. .+..+..+++
T Consensus 410 l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 489 (592)
T 3ogk_B 410 LVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPN 489 (592)
T ss_dssp EEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTT
T ss_pred EeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcc
Confidence 54 2233321 011234456777777775443 222111122 3467777777777776642 2334456777
Q ss_pred CcEEEcccccccccc-C-CCcccCCcceEeccCCcCCCCCCccc-cCCCCccEeeCCCC
Q 036588 427 LEKLDLQYNRLQGTI-P-YAGHLFQLQWLDLSDNQLSGSLPSFK-FKMPLLQFLDLSSN 482 (541)
Q Consensus 427 L~~L~l~~~~~~~~~-~-~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~ 482 (541)
|+.|++++|.+.... + ....+++|+.|++++|.+++.....+ ..+|.+....+...
T Consensus 490 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 490 LQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred cCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 888888887754321 1 13456778888888887765433333 35677766666554
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-30 Score=260.17 Aligned_cols=374 Identities=22% Similarity=0.132 Sum_probs=232.6
Q ss_pred CcceEEEecCccccccCCc-cccCCCCccEEEeccCcccc----cCCccccccCCCcEEEccCceeeeecc-C-CCCcC-
Q 036588 137 RNWQQLYLSKNMFYGEIPS-DIANCSYLRILVLQFNNFSG----AIPKEISNLTKLEKLDLQYNKLQGTIP-Y-AGHLY- 208 (541)
Q Consensus 137 ~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~-~-~~~~~- 208 (541)
++|++|+++++.+.+.... .+..+++|++|++++|.+.+ .++..+..+++|++|++++|.+.+... . ...++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4677788888877654333 26778888888888888764 234556677888888888887764222 1 22233
Q ss_pred ---CCCEEECCCCcccC----CCCcccCCCCCccEEeccCCcccCcCChhh----hccCCCCcEEEecCccccccC----
Q 036588 209 ---QLQWLDLSDNQLSG----SLPSFKFKMPLLQFLDLSSNRLSAELPTNV----FHNLPFLEELYLSNNMFYGEI---- 273 (541)
Q Consensus 209 ---~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~---- 273 (541)
+|++|++++|.+.. .++..+..+++|++|++++|.+.+..+..+ +...++|++|++++|.++...
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 68888888887763 335667778888888888887643322222 223457888888888776432
Q ss_pred CCCCcCcccccEEEecccccCCCcccccc-----ccCCccEEEeeCCccccc-----cccccccCCCcEEeccCccccCC
Q 036588 274 PSDTANCSYLRILVLRFNNFSGAIPKEIS-----NLTKLEKLDLQYNRLQGT-----ILYVGHLLQLQWLDLSDNQLSGS 343 (541)
Q Consensus 274 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~ 343 (541)
+..+..+++|++|++++|.+.......+. ..++|++|++++|.+... ...+..+++|++|++++|.+...
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 34455567888888888776544333332 255788888888876642 22355677888888887766532
Q ss_pred C-----CcccCCCCcceEEEcccCcCcCcC---ChhhhcCCCCccEEEccCcccccCCCcCC-----cCCccCCeEEccc
Q 036588 344 L-----PSFKFNMPLLQFLDLSSNRLSVEL---PTNVFHNLPFLEELYLSNNMFYGEIPSDT-----QNCSYLRILVLKF 410 (541)
Q Consensus 344 ~-----~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~ 410 (541)
. +..+..+++|++|++++|.++... ....+..+++|++|++++|.+.+.....+ ...++|++|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 1 222335677888888887775321 12234457778888888777653222111 2235788888888
Q ss_pred CCCCCc----cchhhhccCCCcEEEccccccccccCC-C-----cccCCcceEeccCCcCCC----CCCccccCCCCccE
Q 036588 411 NNFPGA----IPKEISNLTKLEKLDLQYNRLQGTIPY-A-----GHLFQLQWLDLSDNQLSG----SLPSFKFKMPLLQF 476 (541)
Q Consensus 411 ~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~-~-----~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~ 476 (541)
|.++.. .+..+..+++|++|++++|.+.+..+. + ...++|+.|++++|.+.+ .++..+..+++|++
T Consensus 323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~ 402 (461)
T 1z7x_W 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred CCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccE
Confidence 877654 344555677888888888776543221 1 125677777777777664 44555666777777
Q ss_pred eeCCCCccccccCcc---cc-cCCcccceeeeccceec
Q 036588 477 LDLSSNRLSTELPTN---VF-HNLPFLEELYLSNNMFY 510 (541)
Q Consensus 477 L~l~~~~~~~~~~~~---~~-~~~~~L~~L~l~~~~~~ 510 (541)
|++++|++.+.-... .+ .....|+.|++.++.+.
T Consensus 403 L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 403 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp EECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred EECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 777777764321101 11 12234666666655544
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.9e-26 Score=216.39 Aligned_cols=223 Identities=22% Similarity=0.235 Sum_probs=140.4
Q ss_pred CCCCCCccccceeeeCCC-----------CCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCC
Q 036588 2 WNTSSSVCNWTGITCDVR-----------TYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSS 70 (541)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~-----------~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 70 (541)
|..+...|.|.++ |+.+ .+++++|+++++++++..++.|+++++|++|++++|.+++..+..|.++++
T Consensus 23 ~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (353)
T 2z80_A 23 SNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101 (353)
T ss_dssp ----CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCC
Confidence 5566778888776 5422 237888888888888666667888888888888888887666677888888
Q ss_pred CcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCccCC-ccCCCCCCCcEEecCCCccccccccCcceEEEecCccc
Q 036588 71 LLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIP-STLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMF 149 (541)
Q Consensus 71 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~ 149 (541)
|++|++++|.+ +.++...+.++++|++|++++|+++...+ ..+.++++|++++++++. .+
T Consensus 102 L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~------------------~~ 162 (353)
T 2z80_A 102 LEHLDLSYNYL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD------------------TF 162 (353)
T ss_dssp CCEEECCSSCC-SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS------------------SC
T ss_pred CCEEECCCCcC-CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc------------------cc
Confidence 88888888877 45666655558888888888887774333 366777777774444331 23
Q ss_pred cccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeeeccC-CCCcCCCCEEECCCCcccCCCCccc
Q 036588 150 YGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPY-AGHLYQLQWLDLSDNQLSGSLPSFK 228 (541)
Q Consensus 150 ~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~ 228 (541)
....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+...... +..+++|+.|++++|.+....+..+
T Consensus 163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 242 (353)
T 2z80_A 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL 242 (353)
T ss_dssp CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--
T ss_pred cccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccc
Confidence 444455566667777777777766666666666667777777766665433332 2345666666666666554322211
Q ss_pred ---CCCCCccEEeccCCcc
Q 036588 229 ---FKMPLLQFLDLSSNRL 244 (541)
Q Consensus 229 ---~~~~~L~~L~l~~~~~ 244 (541)
...+.++.++++++.+
T Consensus 243 ~~~~~~~~l~~l~L~~~~l 261 (353)
T 2z80_A 243 STGETNSLIKKFTFRNVKI 261 (353)
T ss_dssp ----CCCCCCEEEEESCBC
T ss_pred ccccccchhhccccccccc
Confidence 1234444555544443
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.7e-29 Score=254.92 Aligned_cols=395 Identities=17% Similarity=0.121 Sum_probs=242.4
Q ss_pred ccCcceEEEecCccccccCCcccc-CCCCccEEEeccC-ccccc-CCccccccCCCcEEEccCceeeeecc-----CCCC
Q 036588 135 TKRNWQQLYLSKNMFYGEIPSDIA-NCSYLRILVLQFN-NFSGA-IPKEISNLTKLEKLDLQYNKLQGTIP-----YAGH 206 (541)
Q Consensus 135 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~-~i~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~-----~~~~ 206 (541)
.+++|++|+++++.+.+..+..+. .+++|++|++.+| .+.+. ++..+..+++|++|++++|.+.+... ....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 345666677777776655444454 6889999999988 44432 33334478899999999988765322 2346
Q ss_pred cCCCCEEECCCCc--ccC-CCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCcc-------ccccCCCC
Q 036588 207 LYQLQWLDLSDNQ--LSG-SLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNM-------FYGEIPSD 276 (541)
Q Consensus 207 ~~~L~~L~l~~~~--~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~ 276 (541)
+++|+.|+++++. +.. .+......+++|++|++++|..... ....+..+++|+.|.+..+. +. ..+..
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~ 260 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVA 260 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHH-HHHHH
Confidence 7789999998876 110 1112233468899999988832222 33455778889998865442 22 12235
Q ss_pred CcCcccccEE-EecccccCCCccccccccCCccEEEeeCCcccccccc--ccccCCCcEEeccCccccCCCCcccCCCCc
Q 036588 277 TANCSYLRIL-VLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILY--VGHLLQLQWLDLSDNQLSGSLPSFKFNMPL 353 (541)
Q Consensus 277 ~~~~~~L~~L-~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 353 (541)
+.++++|+.+ .+.+... ...+..+..+++|++|++++|.+...... +..+++|++|++.+|.....+......+++
T Consensus 261 l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKD 339 (594)
T ss_dssp HHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred HhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCC
Confidence 6677888888 3333221 23344445678899999988885432222 557788888888887222222223335788
Q ss_pred ceEEEccc---------CcCcCcCChhhhcCCCCccEEEccCcccccCCCcCC-cCCccCCeEEcc--c----CCCCC--
Q 036588 354 LQFLDLSS---------NRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDT-QNCSYLRILVLK--F----NNFPG-- 415 (541)
Q Consensus 354 L~~L~l~~---------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~--~----~~~~~-- 415 (541)
|++|++.+ +.+++.........+++|+.|.+..+.+++.....+ ..+++|++|+++ + +.++.
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence 88888843 233322223334457888888777666653332233 257888888888 3 33432
Q ss_pred ---ccchhhhccCCCcEEEccccccccccC-CCc-ccCCcceEeccCCcCCCCCCccc-cCCCCccEeeCCCCccccccC
Q 036588 416 ---AIPKEISNLTKLEKLDLQYNRLQGTIP-YAG-HLFQLQWLDLSDNQLSGSLPSFK-FKMPLLQFLDLSSNRLSTELP 489 (541)
Q Consensus 416 ---~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~ 489 (541)
..+..+..+++|+.|++++ .+.+... .+. .+++|+.|++++|.+++.....+ ..+++|++|++++|.+.+...
T Consensus 420 ~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~ 498 (594)
T 2p1m_B 420 LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL 498 (594)
T ss_dssp THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHH
T ss_pred hhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHH
Confidence 1122356678888888876 3332211 122 37788888888887765333333 567888888888888743332
Q ss_pred cccccCCcccceeeeccceecccCCCCC-CCccccceEEeecccc
Q 036588 490 TNVFHNLPFLEELYLSNNMFYGEIPSDT-PNCSYLRILVVQFNNF 533 (541)
Q Consensus 490 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~ 533 (541)
......+++|+.|++++|+++......+ ..+|.|+...+..+.-
T Consensus 499 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 499 LANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp HHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred HHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence 2344567888888888888764433344 4567777666665543
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-28 Score=252.61 Aligned_cols=396 Identities=14% Similarity=0.065 Sum_probs=189.4
Q ss_pred CCCCCcEecccccccCCccchhhh-hcCCCcEEEeecC-ccCCCCChhhhhhcCCCcEeeccccccCccCCcc----CCC
Q 036588 43 NLSSLQTLDLSFNWFSGSIPASIF-NMSSLLSINFINN-ALFGELPPNFCNHLSNLESLFLKSNMFHGKIPST----LSS 116 (541)
Q Consensus 43 ~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~ 116 (541)
.+++|++|+++++.+++..+..+. .+++|++|++.+| .+.......+..++++|++|++++|.+++..+.. ...
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 455566666665555544444443 4556666666555 2211112233333566666666555544332222 224
Q ss_pred CCCCcEEecCCCccccccccCcceEEEecCccccc-cCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCc
Q 036588 117 CKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYG-EIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYN 195 (541)
Q Consensus 117 l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~ 195 (541)
+++|++|+++++.. .+.. .+...+..+++|++|++.+|.....++..+..+++|++|.+..+
T Consensus 183 ~~~L~~L~l~~~~~-----------------~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 183 YTSLVSLNISCLAS-----------------EVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp CCCCCEEECTTCCS-----------------CCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred CCcCcEEEecccCC-----------------cCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 44555544444430 0110 01111233456666666555222223444555556666654333
Q ss_pred e-------eeeeccCCCCcCCCCEE-ECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCc
Q 036588 196 K-------LQGTIPYAGHLYQLQWL-DLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNN 267 (541)
Q Consensus 196 ~-------~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 267 (541)
. +.+....+..+++|+.+ .+.+... ..++..+..+++|++|++++|.+.+.....++..+++|++|++.++
T Consensus 246 ~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 246 TAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp CCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred cCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 1 12222234455556555 2222111 1222223345666666666665433222333445666666666655
Q ss_pred ccccc-CCCCCcCcccccEEEecc---------cccCCCccccc-cccCCccEEEeeCCcccccccc-c-cccCCCcEEe
Q 036588 268 MFYGE-IPSDTANCSYLRILVLRF---------NNFSGAIPKEI-SNLTKLEKLDLQYNRLQGTILY-V-GHLLQLQWLD 334 (541)
Q Consensus 268 ~~~~~-~~~~~~~~~~L~~L~l~~---------~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~-~-~~~~~L~~L~ 334 (541)
+... .+.....+++|++|++.+ +.++......+ ..+++|+.|.+..+.+...... + ..+++|+.|+
T Consensus 325 -~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~ 403 (594)
T 2p1m_B 325 -IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFR 403 (594)
T ss_dssp -GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEE
T ss_pred -cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeE
Confidence 2211 111122356666666633 12221111122 2366677776665555432222 2 2466777777
Q ss_pred cc--C----ccccC-----CCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCC-cCCcc
Q 036588 335 LS--D----NQLSG-----SLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDT-QNCSY 402 (541)
Q Consensus 335 l~--~----~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~ 402 (541)
++ + +.++. .+...+..+++|+.|++++ .+++.........+++|+.|++++|.+++.....+ ..+++
T Consensus 404 L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 482 (594)
T 2p1m_B 404 LCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDS 482 (594)
T ss_dssp EEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTT
T ss_pred eecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCC
Confidence 76 2 22221 0111244567777777766 44433333344347777888887777643322223 45777
Q ss_pred CCeEEcccCCCCCccch-hhhccCCCcEEEccccccccccCC--CcccCCcceEeccCC
Q 036588 403 LRILVLKFNNFPGAIPK-EISNLTKLEKLDLQYNRLQGTIPY--AGHLFQLQWLDLSDN 458 (541)
Q Consensus 403 L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~ 458 (541)
|++|++++|.+++.... ....+++|+.|++++|++...... ...+++|+...+..+
T Consensus 483 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 483 LRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp CCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred cCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 88888887777543333 334577788888888776322111 134566665555544
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-25 Score=209.03 Aligned_cols=241 Identities=24% Similarity=0.246 Sum_probs=157.1
Q ss_pred ccccceeeeCCC---------CCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCc--cchhhhhcCCCcEEEe
Q 036588 8 VCNWTGITCDVR---------TYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGS--IPASIFNMSSLLSINF 76 (541)
Q Consensus 8 ~~~~~~~~~~~~---------~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l 76 (541)
.|.|.++.|... .+++++|+++++.++...+..|+++++|++|++++|.++.. .+..+..+++|++|++
T Consensus 6 ~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred eeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 478888888542 24788888888888865556678888888888888887622 3677777888888888
Q ss_pred ecCccCCCCChhhhhhcCCCcEeeccccccCccCC-ccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCc
Q 036588 77 INNALFGELPPNFCNHLSNLESLFLKSNMFHGKIP-STLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPS 155 (541)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 155 (541)
++|.+. .+|..+.. +++|++|+++++.++...+ ..+..+++|+++++++ |.+....+.
T Consensus 86 s~n~i~-~l~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-------------------n~l~~~~~~ 144 (306)
T 2z66_A 86 SFNGVI-TMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH-------------------THTRVAFNG 144 (306)
T ss_dssp CSCSEE-EEEEEEET-CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTT-------------------SCCEECSTT
T ss_pred CCCccc-cChhhcCC-CCCCCEEECCCCcccccccchhhhhccCCCEEECCC-------------------CcCCccchh
Confidence 888773 56666555 8888888888888875544 4677777777755554 444444555
Q ss_pred cccCCCCccEEEeccCcccc-cCCccccccCCCcEEEccCceeeeecc-CCCCcCCCCEEECCCCcccCCCCcccCCCCC
Q 036588 156 DIANCSYLRILVLQFNNFSG-AIPKEISNLTKLEKLDLQYNKLQGTIP-YAGHLYQLQWLDLSDNQLSGSLPSFKFKMPL 233 (541)
Q Consensus 156 ~~~~~~~L~~L~l~~~~i~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 233 (541)
.+..+++|++|++++|.+.+ ..+..+..+++|++|++++|.+.+..+ .+..+++|+.|++++|.+....+..+..+++
T Consensus 145 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 224 (306)
T 2z66_A 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 224 (306)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTT
T ss_pred hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCccc
Confidence 55666666666666666553 345556666666666666666655433 3555666666666666665544445555666
Q ss_pred ccEEeccCCcccCcCChhhhccC-CCCcEEEecCcccc
Q 036588 234 LQFLDLSSNRLSAELPTNVFHNL-PFLEELYLSNNMFY 270 (541)
Q Consensus 234 L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~ 270 (541)
|++|++++|.+.+..+.. +..+ ++|+.|++++|.+.
T Consensus 225 L~~L~L~~N~l~~~~~~~-~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 225 LQVLDYSLNHIMTSKKQE-LQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCEEECTTSCCCBCSSSS-CCCCCTTCCEEECTTCCEE
T ss_pred CCEeECCCCCCcccCHHH-HHhhhccCCEEEccCCCee
Confidence 666666666654333322 2444 36666666666554
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-25 Score=215.56 Aligned_cols=252 Identities=23% Similarity=0.257 Sum_probs=131.9
Q ss_pred CCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCcccccccc-ccccCCCcEEecc
Q 036588 258 FLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILY-VGHLLQLQWLDLS 336 (541)
Q Consensus 258 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~ 336 (541)
+|++|+++++.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+...... +..+++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 344444444444433333444444444444444444433333344444444444444444433222 3444555555555
Q ss_pred CccccCCCC-cccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCC
Q 036588 337 DNQLSGSLP-SFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPG 415 (541)
Q Consensus 337 ~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 415 (541)
+|.+..... ..+..+++|++|++++|.....++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 554443222 3455566666666666632224444455566777777777776665556666777777777777777654
Q ss_pred ccchhhhccCCCcEEEccccccccccCC----CcccCCcceEeccCCcCCC----CCCccccCCCCccEeeCCCCccccc
Q 036588 416 AIPKEISNLTKLEKLDLQYNRLQGTIPY----AGHLFQLQWLDLSDNQLSG----SLPSFKFKMPLLQFLDLSSNRLSTE 487 (541)
Q Consensus 416 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~ 487 (541)
.....+..+++|+.|++++|.+.+.... ....+.++.+++.++.+.+ .++..+..+++|++|++++|.+. .
T Consensus 213 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~ 291 (353)
T 2z80_A 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-S 291 (353)
T ss_dssp HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-C
T ss_pred chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-c
Confidence 4444445567777777777766543221 1223445555555554433 23334455566666666666553 3
Q ss_pred cCcccccCCcccceeeeccceec
Q 036588 488 LPTNVFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 488 ~~~~~~~~~~~L~~L~l~~~~~~ 510 (541)
++...+..+++|+.|++++|++.
T Consensus 292 i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 292 VPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCHHHHhcCCCCCEEEeeCCCcc
Confidence 55444455566666666666555
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-24 Score=202.64 Aligned_cols=264 Identities=23% Similarity=0.211 Sum_probs=186.4
Q ss_pred CCCcEEEecCccccccCCCCCcCcccccEEEecccccCCC--ccccccccCCccEEEeeCCccccccccccccCCCcEEe
Q 036588 257 PFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGA--IPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLD 334 (541)
Q Consensus 257 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 334 (541)
+++++|+++++.+....+..|..+++|++|++++|.+... .+..+..+++|+.|++++|.+......+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 3555555555555543344455666666666666655422 13344556777777777777665555567777788888
Q ss_pred ccCccccCCCC-cccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCccccc-CCCcCCcCCccCCeEEcccCC
Q 036588 335 LSDNQLSGSLP-SFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYG-EIPSDTQNCSYLRILVLKFNN 412 (541)
Q Consensus 335 l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~ 412 (541)
+++|.+..... ..+..+++|+.|++++|.+. ......+..+++|++|++.+|.+.+ ..+..+..+++|++|++++|.
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCE-ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCC-ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 88777765443 46677888888888888876 4445556678889999998888865 466778888999999999998
Q ss_pred CCCccchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCCCCCccccCCC-CccEeeCCCCccccccCc
Q 036588 413 FPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKMP-LLQFLDLSSNRLSTELPT 490 (541)
Q Consensus 413 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~ 490 (541)
+....+..+..+++|+.|++++|.+....+. +..+++|+.|++++|.+....+..+..++ +|++|++++|++......
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 8877788888899999999999988765553 67788999999999988877777888875 899999999988654322
Q ss_pred ccc-cCCcccceeeeccceecccCCCCCCCcc
Q 036588 491 NVF-HNLPFLEELYLSNNMFYGEIPSDTPNCS 521 (541)
Q Consensus 491 ~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 521 (541)
..+ .-+...+.+.+..+.+....|+.++..+
T Consensus 267 ~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~ 298 (306)
T 2z66_A 267 QSFLQWIKDQRQLLVEVERMECATPSDKQGMP 298 (306)
T ss_dssp HHHHHHHHHTGGGBSCGGGCBEEESGGGTTCB
T ss_pred HHHHHHHHhhhhhhccccccccCCchhhCCce
Confidence 111 2233455566666667766777666543
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-24 Score=200.74 Aligned_cols=234 Identities=23% Similarity=0.226 Sum_probs=154.5
Q ss_pred ccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcc
Q 036588 281 SYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLS 360 (541)
Q Consensus 281 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 360 (541)
++++.|+++++.+. .++..+..+++|++|++++|.+......+..+++|++|++++|.+. .++..+..+++|+.|+++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 45566666666555 3444455556666666666555533333455555555555555444 333344444444444444
Q ss_pred cCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccc
Q 036588 361 SNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGT 440 (541)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 440 (541)
+|...+.++..... . .....+..+++|++|++++|.+. ..+..+..+++|+.|++++|.+.+.
T Consensus 159 ~n~~~~~~p~~~~~-------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l 221 (328)
T 4fcg_A 159 ACPELTELPEPLAS-------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL 221 (328)
T ss_dssp EETTCCCCCSCSEE-------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCC
T ss_pred CCCCccccChhHhh-------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcC
Confidence 44333222222110 0 01112344788888888888877 5566788888888888888888766
Q ss_pred cCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCc
Q 036588 441 IPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNC 520 (541)
Q Consensus 441 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 520 (541)
.+.+..+++|+.|++++|.+...++..+..+++|++|++++|.+.+.++ ..+..+++|+.|++++|++.+.+|+.+..+
T Consensus 222 ~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L 300 (328)
T 4fcg_A 222 GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP-LDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300 (328)
T ss_dssp CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC-TTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc-hhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence 5567778888888888888877788888888888888888888878777 457788888888888888888888888888
Q ss_pred cccceEEeeccccc
Q 036588 521 SYLRILVVQFNNFS 534 (541)
Q Consensus 521 ~~L~~L~l~~~~~~ 534 (541)
++|+.+++..+.+.
T Consensus 301 ~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 301 PANCIILVPPHLQA 314 (328)
T ss_dssp CTTCEEECCGGGSC
T ss_pred cCceEEeCCHHHHH
Confidence 88888888876553
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=206.20 Aligned_cols=245 Identities=25% Similarity=0.285 Sum_probs=126.3
Q ss_pred CcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccc-cccccCCCcEEeccC
Q 036588 259 LEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTIL-YVGHLLQLQWLDLSD 337 (541)
Q Consensus 259 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~ 337 (541)
...++..+..+. ..|..+. ++++.|++++|.+....+..+..+++|+.|++++|.+..... .+..+++|++|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 345555555544 3343332 456667777666665555566666666666666666554432 255566666666666
Q ss_pred ccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccc-cCCCcCCcCCccCCeEEcccCCCCCc
Q 036588 338 NQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFY-GEIPSDTQNCSYLRILVLKFNNFPGA 416 (541)
Q Consensus 338 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~ 416 (541)
|.+.......+..+++|++|++++|.++ .++...+..+++|+.|++.+|... ......|..+++|++|++++|.+...
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 6555444445555566666666665554 444444555555555555553322 12222445555555555555555422
Q ss_pred cchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccC
Q 036588 417 IPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHN 495 (541)
Q Consensus 417 ~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 495 (541)
+ .+..+++|+.|++++|.+....+. +..+++|+.|++++|.+....+..+..+++|++|++++|++. .++...+..
T Consensus 201 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~ 277 (440)
T 3zyj_A 201 -P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTP 277 (440)
T ss_dssp -C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCTTTTSS
T ss_pred -c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccChhHhcc
Confidence 1 244455555555555554443322 444455555555555554444444445555555555555442 233344444
Q ss_pred Ccccceeeeccceec
Q 036588 496 LPFLEELYLSNNMFY 510 (541)
Q Consensus 496 ~~~L~~L~l~~~~~~ 510 (541)
+++|+.|++++|++.
T Consensus 278 l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 278 LHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTCCEEECCSSCEE
T ss_pred ccCCCEEEcCCCCcc
Confidence 455555555555544
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.91 E-value=9.9e-24 Score=208.75 Aligned_cols=246 Identities=23% Similarity=0.203 Sum_probs=152.7
Q ss_pred CcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecC
Q 036588 47 LQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLS 126 (541)
Q Consensus 47 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~ 126 (541)
.+.++.++..++ .+|..+. +++++|++++|.+.+..+..+.. +++|++|++++|.+....+..|.++++|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~---- 127 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRH-LHHLEVLQLGRNSIRQIEVGAFNGLASLNT---- 127 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCE----
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCC-CCCCCEEECCCCccCCcChhhccCcccCCE----
Confidence 355666655555 4554433 46666666666664333334433 666777777666666555566666666666
Q ss_pred CCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCc-eeeeecc-CC
Q 036588 127 LNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYN-KLQGTIP-YA 204 (541)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~-~~ 204 (541)
|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|+++++ .+..... .+
T Consensus 128 ---------------L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~ 192 (452)
T 3zyi_A 128 ---------------LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192 (452)
T ss_dssp ---------------EECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT
T ss_pred ---------------EECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhc
Confidence 333344444444445566666666666666665444445666666666666653 3332322 25
Q ss_pred CCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCccccc
Q 036588 205 GHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLR 284 (541)
Q Consensus 205 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 284 (541)
..+++|++|++++|.+... + .+..+++|+.|++++|.+. .++...|..+++|+.|++.+|.+....+..|..+++|+
T Consensus 193 ~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 269 (452)
T 3zyi_A 193 EGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269 (452)
T ss_dssp TTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCS-EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCc-ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCC
Confidence 6666777777777666532 2 3556677777777777764 34444557777777777777777777777777777888
Q ss_pred EEEecccccCCCccccccccCCccEEEeeCCccc
Q 036588 285 ILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQ 318 (541)
Q Consensus 285 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 318 (541)
.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 270 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp EEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred EEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 8888887777655566677778888888777654
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-23 Score=206.03 Aligned_cols=227 Identities=24% Similarity=0.220 Sum_probs=116.4
Q ss_pred ccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcc
Q 036588 281 SYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLS 360 (541)
Q Consensus 281 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 360 (541)
++++.|++++|.+....+..+..+++|+.|++++|.+.. ..+..+..+++|++|+++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-----------------------~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ-----------------------IEVGAFNGLASLNTLELF 131 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-----------------------ECTTTTTTCTTCCEEECC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCC-----------------------cChhhccCcccCCEEECC
Confidence 455555555555554444455555555555555555443 333344444444444444
Q ss_pred cCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccC-CCCCccchhhhccCCCcEEEcccccccc
Q 036588 361 SNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFN-NFPGAIPKEISNLTKLEKLDLQYNRLQG 439 (541)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 439 (541)
+|.++ .++...+..+++|++|++++|++....+..|..+++|++|++++| .+....+..|..+++|+.|++++|.+..
T Consensus 132 ~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 132 DNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp SSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred CCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 44443 333344444555555555555444333334455555555555542 2222333345555555555555555542
Q ss_pred ccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCC
Q 036588 440 TIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPN 519 (541)
Q Consensus 440 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 519 (541)
.+.+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+ +....+..+++|+.|++++|.+.+..++.+..
T Consensus 211 -~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 211 -MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL-IERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp -CCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred -cccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce-ECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 2334455555555665555555555555555666666666665533 32244555556666666666555444445555
Q ss_pred ccccceEEeecccc
Q 036588 520 CSYLRILVVQFNNF 533 (541)
Q Consensus 520 ~~~L~~L~l~~~~~ 533 (541)
+++|+.|++++|++
T Consensus 289 l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 289 LRYLVELHLHHNPW 302 (452)
T ss_dssp CTTCCEEECCSSCE
T ss_pred ccCCCEEEccCCCc
Confidence 56666666665554
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-23 Score=205.02 Aligned_cols=245 Identities=22% Similarity=0.199 Sum_probs=115.7
Q ss_pred EEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccc
Q 036588 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKS 103 (541)
Q Consensus 24 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 103 (541)
+.++.++.+++ .+|..+. ++++.|+|++|.++...+..|.++++|++|++++|.+. .++...+.++++|++|++++
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCC
Confidence 34455555555 3444333 45566666666665444555666666666666666553 33333333366666666666
Q ss_pred cccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCc-ccccCCcccc
Q 036588 104 NMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNN-FSGAIPKEIS 182 (541)
Q Consensus 104 ~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~ 182 (541)
|+++...+..|..+++|++ |++++|.+....+..|..+++|+.|+++++. +....+..+.
T Consensus 122 n~l~~~~~~~~~~l~~L~~-------------------L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~ 182 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKE-------------------LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCE-------------------EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT
T ss_pred CcCCeeCHhHhhccccCce-------------------eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhh
Confidence 6555444444555555555 3333333333333445555555555555522 2222222344
Q ss_pred ccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEE
Q 036588 183 NLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEEL 262 (541)
Q Consensus 183 ~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 262 (541)
.+++|++|++++|.+... +.+..+++|+.|++++|.+....+..+ ..+++|+.|
T Consensus 183 ~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~-------------------------~~l~~L~~L 236 (440)
T 3zyj_A 183 GLSNLRYLNLAMCNLREI-PNLTPLIKLDELDLSGNHLSAIRPGSF-------------------------QGLMHLQKL 236 (440)
T ss_dssp TCSSCCEEECTTSCCSSC-CCCTTCSSCCEEECTTSCCCEECTTTT-------------------------TTCTTCCEE
T ss_pred cccccCeecCCCCcCccc-cccCCCcccCEEECCCCccCccChhhh-------------------------ccCccCCEE
Confidence 445555555555444422 223444444444444444433333333 344444444
Q ss_pred EecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCcc
Q 036588 263 YLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRL 317 (541)
Q Consensus 263 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 317 (541)
++.+|.+....+..|..+++|+.|++++|.+....+..+..+++|+.|++++|.+
T Consensus 237 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp ECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred ECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 4444444444444444444455555555444433334444445555555555443
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.1e-24 Score=195.68 Aligned_cols=206 Identities=26% Similarity=0.250 Sum_probs=124.2
Q ss_pred CCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccc-cCCCccccccccCCccEE
Q 036588 232 PLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNN-FSGAIPKEISNLTKLEKL 310 (541)
Q Consensus 232 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L 310 (541)
+++++|+++++.+. .++...|..+++|+.|+++++.+....+..+..+++|++|++++|. +....+..+..+++|+.|
T Consensus 32 ~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 45555555555553 2333344555566666666655555555556666666666666664 444444555556666666
Q ss_pred EeeCCcccccccc-ccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCccc
Q 036588 311 DLQYNRLQGTILY-VGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMF 389 (541)
Q Consensus 311 ~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 389 (541)
++++|.+....+. +..+++|++|++++|.+....+..+..+++|+.|++++|.++ .++...+..+++|+.|++++|.+
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccCHHHhcCccccCEEECCCCcc
Confidence 6666655543222 455556666666666555444445556666777777766665 44555555667777777777776
Q ss_pred ccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEcccccccc
Q 036588 390 YGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQG 439 (541)
Q Consensus 390 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 439 (541)
.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|++..
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 65556666777777777777777766655666677777777777776653
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.9e-24 Score=195.43 Aligned_cols=250 Identities=23% Similarity=0.227 Sum_probs=152.4
Q ss_pred CCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEecc
Q 036588 257 PFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLS 336 (541)
Q Consensus 257 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 336 (541)
+++++|+++++.+....+..|..+++|++|++++|.+....+..+..+++|+.|++++|..
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~------------------- 92 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ------------------- 92 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT-------------------
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC-------------------
Confidence 4555555555555544444455555555555555554433344444444445444444430
Q ss_pred CccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCc
Q 036588 337 DNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGA 416 (541)
Q Consensus 337 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 416 (541)
+....+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+....+..+..+++|++|++++|.+...
T Consensus 93 ---l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 93 ---LRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp ---CCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred ---ccccCHHHhcCCcCCCEEECCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 33333444555666666666666655 34444455667777777777766644445566777777777777777765
Q ss_pred cchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccC
Q 036588 417 IPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHN 495 (541)
Q Consensus 417 ~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 495 (541)
.+..+..+++|+.|++++|.+....+. +..+++|+.|++++|.+....+..+..+++|++|++++|++....+...+
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~-- 246 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL-- 246 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHH--
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHH--
Confidence 555677777777777777777655443 66677888888888887766556677888888888888887554332211
Q ss_pred CcccceeeeccceecccCCCCCCC--ccccceEEeecc
Q 036588 496 LPFLEELYLSNNMFYGEIPSDTPN--CSYLRILVVQFN 531 (541)
Q Consensus 496 ~~~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~ 531 (541)
...++.+....+.+....|+.++. +..++..++.+|
T Consensus 247 ~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 247 WAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp HHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred HHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 234566666666666667766554 455666566655
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-25 Score=209.09 Aligned_cols=250 Identities=20% Similarity=0.195 Sum_probs=147.1
Q ss_pred cccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCcc-CCCCChhhh------hhcCCCcEeeccccccCccCCc
Q 036588 40 ELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNAL-FGELPPNFC------NHLSNLESLFLKSNMFHGKIPS 112 (541)
Q Consensus 40 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~------~~l~~L~~L~l~~~~~~~~~~~ 112 (541)
.++..++|++|+++++.+ .+|..+... |++|++++|.+ ...+|..+. .++++|++|++++|.+++..|.
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 345667777777777777 566655544 67777777766 223444443 1277788888877777766666
Q ss_pred cC--CCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCC-----CCccEEEeccCcccccCCccccccC
Q 036588 113 TL--SSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANC-----SYLRILVLQFNNFSGAIPKEISNLT 185 (541)
Q Consensus 113 ~~--~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~i~~~~~~~l~~l~ 185 (541)
.+ ..+++|++| ++++|.+.+. +..+..+ ++|++|++++|.+....+..++.++
T Consensus 114 ~~~~~~l~~L~~L-------------------~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 114 PLLEATGPDLNIL-------------------NLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp CSSSCCSCCCSEE-------------------EEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred HHHHhcCCCccEE-------------------EccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 55 667777664 4444444433 3344433 5666666666665544445555666
Q ss_pred CCcEEEccCceeeee---ccC--CCCcCCCCEEECCCCcccCC---CCcccCCCCCccEEeccCCcccCcCChhhhccCC
Q 036588 186 KLEKLDLQYNKLQGT---IPY--AGHLYQLQWLDLSDNQLSGS---LPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLP 257 (541)
Q Consensus 186 ~L~~L~l~~~~~~~~---~~~--~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 257 (541)
+|++|++++|.+.+. ... +..+++|++|++++|.+... ....+..+++|++|++++|.+.+..+...+..++
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 666666666554322 111 25566666666666655421 1122334566666666666665444333445566
Q ss_pred CCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccc
Q 036588 258 FLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQ 318 (541)
Q Consensus 258 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 318 (541)
+|+.|++++|.++ ..|..+. ++|++|++++|.+... +. +..+++|+.|++++|.+.
T Consensus 254 ~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 254 QLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp TCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred CCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 7777777777665 4454444 6677777777777644 33 667777777777777654
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.1e-23 Score=188.23 Aligned_cols=215 Identities=25% Similarity=0.319 Sum_probs=162.5
Q ss_pred CCccccceeeeCCCCCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCC
Q 036588 6 SSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGEL 85 (541)
Q Consensus 6 ~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 85 (541)
.++|.|.|..|.. ...++++++++++++ .+|..+. ++++.|+++++.++...+..|.++++|++|++++|.+ +.+
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~i 76 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTL 76 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC-SCC
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc-Cee
Confidence 4789999999975 346889999999999 4666554 6899999999999866667899999999999999998 477
Q ss_pred ChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccE
Q 036588 86 PPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRI 165 (541)
Q Consensus 86 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 165 (541)
+..++..+++|++|++++|.+....+..+..+++|++ |++++|.+....+..+..+++|+.
T Consensus 77 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-------------------L~l~~n~l~~~~~~~~~~l~~L~~ 137 (270)
T 2o6q_A 77 PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE-------------------LRLDRNQLKSLPPRVFDSLTKLTY 137 (270)
T ss_dssp CTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCE-------------------EECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCE-------------------EECCCCccCeeCHHHhCcCcCCCE
Confidence 7777666999999999999988766667777777777 455555566555666777888888
Q ss_pred EEeccCcccccCCccccccCCCcEEEccCceeeeeccC-CCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcc
Q 036588 166 LVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPY-AGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRL 244 (541)
Q Consensus 166 L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 244 (541)
|++++|.+....+..+..+++|++|++++|.+....+. +..+++|+.|++++|.+....+..+..+++|+.|++++|.+
T Consensus 138 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 138 LSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 88888877755555567777777777777777655543 56667777777777766654444555666666666666655
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.3e-25 Score=206.95 Aligned_cols=263 Identities=19% Similarity=0.130 Sum_probs=185.8
Q ss_pred ccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEee
Q 036588 234 LQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQ 313 (541)
Q Consensus 234 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 313 (541)
++..+++.+.+. ..+...+..+++|++|++++|.+....+..+..+++|++|++++|.+....+ +..+++|+.|+++
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 444555555552 3445566777889999999888887666778888889999998888764433 7788888999988
Q ss_pred CCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCC
Q 036588 314 YNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEI 393 (541)
Q Consensus 314 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 393 (541)
+|.+.... ..++|++|++++|.+..... ..+++|++|++++|.++ ..+...+..+++|+.|++++|.+.+..
T Consensus 89 ~n~l~~l~----~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQELL----VGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEEEE----ECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCcccccc----CCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCCCccc
Confidence 88776433 34788888888887764332 23577888888888876 444445567788888888888776544
Q ss_pred CcCC-cCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCC
Q 036588 394 PSDT-QNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMP 472 (541)
Q Consensus 394 ~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 472 (541)
+..+ ..+++|++|++++|.+.... ....+++|++|++++|++....+.+..+++|+.|++++|.+. .++..+..++
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~ 237 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred HHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCC
Confidence 4444 46778888888888776542 223477888888888887766555677788888888888777 4566677778
Q ss_pred CccEeeCCCCccccccCcccccCCcccceeeeccceec
Q 036588 473 LLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 473 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 510 (541)
+|+.|++++|++........+..++.|+.+++.+++..
T Consensus 238 ~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275 (317)
T ss_dssp TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCEEEccCCCccCcCHHHHHhccccceEEECCCchhc
Confidence 88888888888752233356677777888887755533
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-22 Score=206.21 Aligned_cols=278 Identities=26% Similarity=0.240 Sum_probs=181.0
Q ss_pred CCCCCCCccccceee------eCCCCCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEE
Q 036588 1 NWNTSSSVCNWTGIT------CDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSI 74 (541)
Q Consensus 1 ~~~~~~~~~~~~~~~------~~~~~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 74 (541)
+|..+..+|.|++.. |......+++|++++++++ .+|..+. ++|++|++++|.++ .+|. .+++|++|
T Consensus 14 ~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L 86 (622)
T 3g06_A 14 AWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTL 86 (622)
T ss_dssp HHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEE
T ss_pred HHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEE
Confidence 377788899986532 2222336899999999999 6677665 89999999999998 6776 57899999
Q ss_pred EeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCcccccc-ccCcceEEEecCccccccC
Q 036588 75 NFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDH-TKRNWQQLYLSKNMFYGEI 153 (541)
Q Consensus 75 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~ 153 (541)
++++|.+ +.+|. .+++|++|++++|.++. +|. .+++|++|++++|.+.... ..++|++|++++|.+...
T Consensus 87 ~Ls~N~l-~~lp~----~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~l- 156 (622)
T 3g06_A 87 EVSGNQL-TSLPV----LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASL- 156 (622)
T ss_dssp EECSCCC-SCCCC----CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCC-
T ss_pred EcCCCcC-CcCCC----CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCCc-
Confidence 9999998 46776 38999999999999884 343 5677888777777665322 236677777776666542
Q ss_pred CccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCC
Q 036588 154 PSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPL 233 (541)
Q Consensus 154 ~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 233 (541)
+. .+++|+.|++++|.+.. ++ ..+++|+.|++++|.+..... .+++|+.|++++|.+. .++. .+++
T Consensus 157 ~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~-~l~~---~~~~ 222 (622)
T 3g06_A 157 PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASLPT---LPSELYKLWAYNNRLT-SLPA---LPSG 222 (622)
T ss_dssp CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-SCCC---CCTT
T ss_pred CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCCCC---ccchhhEEECcCCccc-ccCC---CCCC
Confidence 22 23566666776666653 33 334666666666666654332 2356666666666655 2222 2356
Q ss_pred ccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEee
Q 036588 234 LQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQ 313 (541)
Q Consensus 234 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 313 (541)
|+.|++++|.+.. ++ ..+++|+.|++++|.+.. +|. .+++|+.|++++|.+. .++..+..+++|+.|+++
T Consensus 223 L~~L~Ls~N~L~~-lp----~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 223 LKELIVSGNRLTS-LP----VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292 (622)
T ss_dssp CCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred CCEEEccCCccCc-CC----CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence 6666666666532 33 344566666666666552 232 3456666666666665 445556666666666666
Q ss_pred CCcccc
Q 036588 314 YNRLQG 319 (541)
Q Consensus 314 ~~~~~~ 319 (541)
+|.+..
T Consensus 293 ~N~l~~ 298 (622)
T 3g06_A 293 GNPLSE 298 (622)
T ss_dssp SCCCCH
T ss_pred CCCCCC
Confidence 665543
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-24 Score=202.22 Aligned_cols=257 Identities=22% Similarity=0.183 Sum_probs=148.1
Q ss_pred EECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccc
Q 036588 213 LDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNN 292 (541)
Q Consensus 213 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 292 (541)
.+++.+.+.......+..+++|++|++++|.+. .++...|..+++|+.|++++|.+.+..+ +..+++|++|++++|.
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY 91 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence 344444443333333444556666666666664 3344445666666666666666654333 5666666666666666
Q ss_pred cCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhh
Q 036588 293 FSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNV 372 (541)
Q Consensus 293 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 372 (541)
+.. +...++|+.|++++|.+..... ..+++|++|++++|.+....+..+..+++|+.|++++|.++...+...
T Consensus 92 l~~-----l~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 164 (317)
T 3o53_A 92 VQE-----LLVGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164 (317)
T ss_dssp EEE-----EEECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred ccc-----ccCCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence 542 2233666666666666554332 234566666666666665545555566666666666666653333333
Q ss_pred hcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcce
Q 036588 373 FHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQW 452 (541)
Q Consensus 373 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 452 (541)
+..+++|++|++++|.+... .....+++|++|++++|.+.... ..+..+++|+.|++++|++......+..+++|+.
T Consensus 165 ~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~ 241 (317)
T 3o53_A 165 AASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241 (317)
T ss_dssp GGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCE
T ss_pred hhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcch-hhhcccCcccEEECcCCcccchhhHhhcCCCCCE
Confidence 34566666666666666533 12234666666666666666433 3366666666666666666654444556666666
Q ss_pred EeccCCcCC-CCCCccccCCCCccEeeCCCC
Q 036588 453 LDLSDNQLS-GSLPSFKFKMPLLQFLDLSSN 482 (541)
Q Consensus 453 L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~ 482 (541)
|++++|++. +..+.++..+++|+.+++.++
T Consensus 242 L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp EECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred EEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 666666665 344555666666666666544
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-24 Score=201.92 Aligned_cols=248 Identities=27% Similarity=0.245 Sum_probs=150.5
Q ss_pred hhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCc-cCCccCC-------CCCCCcEEecCCCcccccccc
Q 036588 65 IFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHG-KIPSTLS-------SCKRLRETSLSLNDFFWDHTK 136 (541)
Q Consensus 65 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~-------~l~~L~~l~~~~~~~~~~~~~ 136 (541)
++..++|++|++.+|.+ .+|..+... |++|+++++.+.. ..+..+. ++++|++
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~-------------- 99 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQE-------------- 99 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCE--------------
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccE--------------
Confidence 44556667777777766 666666552 6666777666642 2333332 3444444
Q ss_pred CcceEEEecCccccccCCccc--cCCCCccEEEeccCcccccCCcccccc-----CCCcEEEccCceeeeecc-CCCCcC
Q 036588 137 RNWQQLYLSKNMFYGEIPSDI--ANCSYLRILVLQFNNFSGAIPKEISNL-----TKLEKLDLQYNKLQGTIP-YAGHLY 208 (541)
Q Consensus 137 ~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~i~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~-~~~~~~ 208 (541)
|++++|.+.+..+..+ ..+++|++|++++|.+... |..++.+ ++|++|++++|.+....+ .+..++
T Consensus 100 -----L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 100 -----LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp -----EEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred -----EEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 5555666665555554 6677777777777776644 5666655 677777777777665553 366677
Q ss_pred CCCEEECCCCcccCC--CCccc--CCCCCccEEeccCCcccC--cCChhhhccCCCCcEEEecCccccccCC-CCCcCcc
Q 036588 209 QLQWLDLSDNQLSGS--LPSFK--FKMPLLQFLDLSSNRLSA--ELPTNVFHNLPFLEELYLSNNMFYGEIP-SDTANCS 281 (541)
Q Consensus 209 ~L~~L~l~~~~~~~~--~~~~~--~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~ 281 (541)
+|+.|++++|.+.+. .+..+ ..+++|++|++++|.+.. .++...+..+++|+.|++++|.+.+..+ ..+..++
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 777777777764322 11122 556777777777776642 2233445566777777777776665442 3445566
Q ss_pred cccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCcccc
Q 036588 282 YLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLS 341 (541)
Q Consensus 282 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 341 (541)
+|++|++++|.++ .++..+. ++|+.|++++|.+... +.+..+++|++|++++|.+.
T Consensus 254 ~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 254 QLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp TCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred CCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCC
Confidence 7777777777666 4444443 6677777777776654 33666677777777776654
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-21 Score=196.66 Aligned_cols=265 Identities=27% Similarity=0.205 Sum_probs=160.4
Q ss_pred CCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEE
Q 036588 208 YQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILV 287 (541)
Q Consensus 208 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 287 (541)
.+++.|+++++.+. .+|..+. ++|++|++++|.+. .++. .+++|+.|++++|.+.. +|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEE
Confidence 35888999888887 5555443 78888888888874 4443 46788888888887763 333 567788888
Q ss_pred ecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCc
Q 036588 288 LRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVE 367 (541)
Q Consensus 288 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 367 (541)
+++|.+... +. .+++|+.|++++|.+..... .+++|++|++++|.+... +. .+++|+.|.+++|.++ .
T Consensus 108 Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~-~ 175 (622)
T 3g06_A 108 IFSNPLTHL-PA---LPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLT-S 175 (622)
T ss_dssp ECSCCCCCC-CC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS-C
T ss_pred CcCCcCCCC-CC---CCCCcCEEECCCCCCCcCCC---CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCC-C
Confidence 888877643 22 45677888888777664332 236777777777766532 21 3456677777777665 3
Q ss_pred CChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCccc
Q 036588 368 LPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHL 447 (541)
Q Consensus 368 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 447 (541)
++ ..+++|+.|++++|.+.+ ++. .+++|+.|++++|.+.... . .+++|+.|++++|.+.... ..+
T Consensus 176 l~----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~-~---~~~~L~~L~Ls~N~L~~lp---~~l 240 (622)
T 3g06_A 176 LP----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLP-A---LPSGLKELIVSGNRLTSLP---VLP 240 (622)
T ss_dssp CC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCC-C---CCTTCCEEECCSSCCSCCC---CCC
T ss_pred Cc----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccC-C---CCCCCCEEEccCCccCcCC---CCC
Confidence 43 245667777777666652 221 2356666666666655322 1 1355666666666555322 334
Q ss_pred CCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCC
Q 036588 448 FQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDT 517 (541)
Q Consensus 448 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 517 (541)
++|+.|++++|.+. .+|. .+++|+.|++++|.+. .+| ..+..+++|+.|++++|++.+..+..+
T Consensus 241 ~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 241 SELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLP-ESLIHLSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCC-GGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred CcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCC-HHHhhccccCEEEecCCCCCCcCHHHH
Confidence 55666666666555 2332 3455666666666553 444 345556666666666666555444433
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.5e-23 Score=202.92 Aligned_cols=235 Identities=21% Similarity=0.153 Sum_probs=132.5
Q ss_pred CCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEecc
Q 036588 257 PFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLS 336 (541)
Q Consensus 257 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 336 (541)
++|+.|++++|.+....+..|..+++|++|++++|.+....+ +..+++|+.|++++|.+.... ..++|++|+++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~----~~~~L~~L~L~ 107 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETLHAA 107 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE----ECTTCCEEECC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC----CCCCcCEEECc
Confidence 467777777777766656667777777777777776654332 666677777777777655332 22566666666
Q ss_pred CccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCc-CCccCCeEEcccCCCCC
Q 036588 337 DNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQ-NCSYLRILVLKFNNFPG 415 (541)
Q Consensus 337 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~ 415 (541)
+|.+....+ ..+++|+.|++++|.++ ......+..+++|+.|++++|.+.+..+..+. .+++|++|++++|.+..
T Consensus 108 ~N~l~~~~~---~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 108 NNNISRVSC---SRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp SSCCCCEEE---CCCSSCEEEECCSSCCC-SGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCcCCCCCc---cccCCCCEEECCCCCCC-CCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 666553322 23456666666666655 23233334556666666666665544444443 45666666666665553
Q ss_pred ccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccc-cccCccccc
Q 036588 416 AIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLS-TELPTNVFH 494 (541)
Q Consensus 416 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~ 494 (541)
.. ....+++|+.|++++|.+.+..+.+..+++|+.|++++|.+. .+|..+..+++|+.|++++|++. +.++ ..+.
T Consensus 184 ~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~-~~~~ 259 (487)
T 3oja_A 184 VK--GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR-DFFS 259 (487)
T ss_dssp EE--CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHH-HHHT
T ss_pred cc--ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchH-HHHH
Confidence 31 122355666666666665554444555556666666666555 34444555556666666666554 2222 3344
Q ss_pred CCcccceeeec
Q 036588 495 NLPFLEELYLS 505 (541)
Q Consensus 495 ~~~~L~~L~l~ 505 (541)
.++.|+.+++.
T Consensus 260 ~l~~L~~l~~~ 270 (487)
T 3oja_A 260 KNQRVQTVAKQ 270 (487)
T ss_dssp TCHHHHHHHHH
T ss_pred hCCCCcEEecc
Confidence 55555555554
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.6e-21 Score=177.30 Aligned_cols=203 Identities=22% Similarity=0.181 Sum_probs=111.0
Q ss_pred CeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeec
Q 036588 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFL 101 (541)
Q Consensus 22 ~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 101 (541)
++++|+++++++++..+..|.++++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+.. +++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT-CTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC-CccccEEEC
Confidence 4666666666666555556666666666666666665444445666666666666666553322233333 666666666
Q ss_pred cccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCcccccc-CCccccCCCCccEEEeccCcccccCCcc
Q 036588 102 KSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGE-IPSDIANCSYLRILVLQFNNFSGAIPKE 180 (541)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 180 (541)
++|.+....+..+.++++|++ |++++|.+... ++..+..+++|+.|++++|.+....+..
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~-------------------L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKE-------------------LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCE-------------------EECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CCCCccccCchhcccCCCCCE-------------------EECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 666555444444555555555 44444444432 3555666666666666666666554455
Q ss_pred ccccCCCc----EEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcc
Q 036588 181 ISNLTKLE----KLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRL 244 (541)
Q Consensus 181 l~~l~~L~----~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 244 (541)
+..+++|+ +|++++|.+....+......+|+.|++++|.+....+..+..+++|+.|++++|.+
T Consensus 169 ~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp GHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred hhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 55555555 55666665555444433334555555555555543333444455555555555544
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-20 Score=170.96 Aligned_cols=202 Identities=28% Similarity=0.306 Sum_probs=147.9
Q ss_pred CccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEcc
Q 036588 306 KLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLS 385 (541)
Q Consensus 306 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 385 (541)
+.+.++++++.+......+ .++++.|+++++.+....+..+..+++|++|++++|.++ .++...|..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECC
Confidence 4677888877776443323 257888888888877666667777888888888888776 6666667778888888888
Q ss_pred CcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCCCC
Q 036588 386 NNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSL 464 (541)
Q Consensus 386 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~ 464 (541)
+|.+....+..+..+++|++|++++|.+....+..|..+++|+.|++++|.+....+. +..+++|+.|++++|.+....
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 8887755555677788888888888887777777777788888888888877655444 566777888888877777666
Q ss_pred CccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecc
Q 036588 465 PSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYG 511 (541)
Q Consensus 465 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 511 (541)
+..+..+++|++|++++|++. .++...+..+++|+.|++++|++..
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCeeC
Confidence 666777777888888777774 4555666777778888887777763
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.86 E-value=6e-21 Score=175.07 Aligned_cols=226 Identities=24% Similarity=0.249 Sum_probs=153.2
Q ss_pred ccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccC
Q 036588 283 LRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSN 362 (541)
Q Consensus 283 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 362 (541)
+..+.+.++.+.+. .....+++|+.|+++++.+. ....+..+++|++|++++|.+... ..+..+++|++|++++|
T Consensus 21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CCTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTS
T ss_pred HHHHHhcCcccccc--cccccccceeeeeeCCCCcc-cccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCC
Confidence 33444444444322 23456788888888888766 334577778888888888877642 35667777888888877
Q ss_pred cCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccC
Q 036588 363 RLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIP 442 (541)
Q Consensus 363 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 442 (541)
.++ .++...+..+++|++|++.+|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|++....+
T Consensus 96 ~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 96 QLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence 776 4555556677777777777777765555556777777777777777776666666777777777777777765444
Q ss_pred C-CcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCcc
Q 036588 443 Y-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCS 521 (541)
Q Consensus 443 ~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 521 (541)
. +..+++|+.|++++|.+....+..+..+++|++|++++|++.+ .+++|+.++++.|.+.+.+|..+..++
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC--------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc--------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence 3 4566777777777777776666666677777777777776632 345677777777777777777666654
Q ss_pred c
Q 036588 522 Y 522 (541)
Q Consensus 522 ~ 522 (541)
.
T Consensus 247 ~ 247 (272)
T 3rfs_A 247 P 247 (272)
T ss_dssp G
T ss_pred C
Confidence 4
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.4e-22 Score=195.77 Aligned_cols=237 Identities=23% Similarity=0.175 Sum_probs=132.2
Q ss_pred CCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEE
Q 036588 231 MPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKL 310 (541)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 310 (541)
+++|++|++++|.+.+ ++...|..+++|+.|++++|.+.+..+ +..+++|++|++++|.+... ...++|+.|
T Consensus 33 ~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-----~~~~~L~~L 104 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETL 104 (487)
T ss_dssp GGGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-----EECTTCCEE
T ss_pred CCCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-----CCCCCcCEE
Confidence 3456666666666542 333444666666666666666554333 55666666666666655421 123566666
Q ss_pred EeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccc
Q 036588 311 DLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFY 390 (541)
Q Consensus 311 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 390 (541)
++++|.+..... ..+++|+.|++++|.+....+..+..+++|+.|++++|.+++..+......+++|+.|++++|.+.
T Consensus 105 ~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 105 HAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp ECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred ECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 666666554332 234566666666666655555555556666666666666654344444345666666666666654
Q ss_pred cCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCC-CCCCcccc
Q 036588 391 GEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLS-GSLPSFKF 469 (541)
Q Consensus 391 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~ 469 (541)
+. .....+++|++|++++|.++...+ .+..+++|+.|++++|.+.+..+.+..+++|+.|++++|++. ...+.++.
T Consensus 183 ~~--~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 183 DV--KGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp EE--ECCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred cc--cccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 33 122345666666666666654333 355666666666666666554444555566666666666554 23344455
Q ss_pred CCCCccEeeCC
Q 036588 470 KMPLLQFLDLS 480 (541)
Q Consensus 470 ~~~~L~~L~l~ 480 (541)
.++.|+.+++.
T Consensus 260 ~l~~L~~l~~~ 270 (487)
T 3oja_A 260 KNQRVQTVAKQ 270 (487)
T ss_dssp TCHHHHHHHHH
T ss_pred hCCCCcEEecc
Confidence 55555555553
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=8.5e-21 Score=174.77 Aligned_cols=205 Identities=27% Similarity=0.274 Sum_probs=153.3
Q ss_pred CCccEEEeeCCccccccc-cccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEE
Q 036588 305 TKLEKLDLQYNRLQGTIL-YVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELY 383 (541)
Q Consensus 305 ~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 383 (541)
++|+.|++++|.+..... .+..+++|++|++++|.+....+..+..+++|++|++++|.++ .++...+..+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-ccChhhhcCCccccEEE
Confidence 478999999998876655 4778888999999888887666667788888888888888886 45555667888888888
Q ss_pred ccCcccccCCCcCCcCCccCCeEEcccCCCCCc-cchhhhccCCCcEEEccccccccccCC-CcccCCcc----eEeccC
Q 036588 384 LSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGA-IPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQ----WLDLSD 457 (541)
Q Consensus 384 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~----~L~l~~ 457 (541)
+.+|.+....+..+..+++|++|++++|.+... .+..+..+++|+.|++++|++....+. +..+++|+ .|++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 888888765555688888888888888888764 477888888888888888887755432 44455555 778888
Q ss_pred CcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceeccc
Q 036588 458 NQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGE 512 (541)
Q Consensus 458 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 512 (541)
|.+....+..+ ...+|++|++++|.+. .++...+..+++|+.|++++|++.+.
T Consensus 187 n~l~~~~~~~~-~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 187 NPMNFIQPGAF-KEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp SCCCEECTTSS-CSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred CcccccCcccc-CCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCccccc
Confidence 87774444333 3347888888888774 45556677778888888888887743
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-20 Score=170.87 Aligned_cols=200 Identities=25% Similarity=0.264 Sum_probs=93.4
Q ss_pred CcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEE
Q 036588 279 NCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLD 358 (541)
Q Consensus 279 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 358 (541)
.+++|+.|++.++.+... ..+..+++|+.|++++|.+.. ...+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 344455555555444321 224445555555555554442 22344445555555555554444434444455555555
Q ss_pred cccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccc
Q 036588 359 LSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQ 438 (541)
Q Consensus 359 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 438 (541)
+++|.++ .++...+..+++|++|++.+|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 116 L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 116 LVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 5555544 333333444555555555555444333333444555555555555554444444444555555555555544
Q ss_pred cccCC-CcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccC
Q 036588 439 GTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELP 489 (541)
Q Consensus 439 ~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 489 (541)
+..+. +..+++|+.|++++|++. +.++.|+.+++..|.+.+.+|
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBB
T ss_pred ccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCccc
Confidence 33332 344455555555555433 234445555555454444444
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-22 Score=193.19 Aligned_cols=213 Identities=22% Similarity=0.294 Sum_probs=129.8
Q ss_pred CCCccccceeeeCCCCCCeEEEEecCCcceeeeCCcccCC--CCCcEecccccccCCccchhhhhcCCCcEEEeecCccC
Q 036588 5 SSSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNL--SSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALF 82 (541)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 82 (541)
+.++..|.+..++ ...++.++++++.+. +..+..+ ++++.|+++++.+.+..+. +.++++|++|++++|.+.
T Consensus 33 ~~vc~~W~~~~~~--~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~ 106 (336)
T 2ast_B 33 SGVCKRWYRLASD--ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIE 106 (336)
T ss_dssp TSSCHHHHHHHTC--STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEEC
T ss_pred HHHHHHHHHHhcC--chhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcC
Confidence 4567789888765 346889999998887 5567777 8899999999988855444 567889999999988874
Q ss_pred CC-CChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccc-cCCccccCC
Q 036588 83 GE-LPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYG-EIPSDIANC 160 (541)
Q Consensus 83 ~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~ 160 (541)
+. ++. ++.++++|++|++++|.+++..+..++++++|++|+++++. .+.+ .++..+..+
T Consensus 107 ~~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~------------------~l~~~~l~~~~~~~ 167 (336)
T 2ast_B 107 VSTLHG-ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS------------------GFSEFALQTLLSSC 167 (336)
T ss_dssp HHHHHH-HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCB------------------SCCHHHHHHHHHHC
T ss_pred HHHHHH-HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCC------------------CCCHHHHHHHHhcC
Confidence 43 333 34448899999998888876677777778888776665542 2222 123334455
Q ss_pred CCccEEEeccC-ccccc-CCccccccC-CCcEEEccCce--ee--eeccCCCCcCCCCEEECCCCc-ccCCCCcccCCCC
Q 036588 161 SYLRILVLQFN-NFSGA-IPKEISNLT-KLEKLDLQYNK--LQ--GTIPYAGHLYQLQWLDLSDNQ-LSGSLPSFKFKMP 232 (541)
Q Consensus 161 ~~L~~L~l~~~-~i~~~-~~~~l~~l~-~L~~L~l~~~~--~~--~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~ 232 (541)
++|++|++++| .+.+. ++..+..++ +|++|++++|. ++ .....+..+++|+.|++++|. +....+..+..++
T Consensus 168 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~ 247 (336)
T 2ast_B 168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 247 (336)
T ss_dssp TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC
Confidence 55666666555 44432 233445555 55555555552 22 111223344555555555554 3323333344444
Q ss_pred CccEEeccCC
Q 036588 233 LLQFLDLSSN 242 (541)
Q Consensus 233 ~L~~L~l~~~ 242 (541)
+|++|++++|
T Consensus 248 ~L~~L~l~~~ 257 (336)
T 2ast_B 248 YLQHLSLSRC 257 (336)
T ss_dssp TCCEEECTTC
T ss_pred CCCEeeCCCC
Confidence 4445544444
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.84 E-value=5.7e-22 Score=188.53 Aligned_cols=250 Identities=19% Similarity=0.151 Sum_probs=105.3
Q ss_pred CcEEEecCccccccCCCCCcCc--ccccEEEecccccCCCccccccccCCccEEEeeCCccccc-c-ccccccCCCcEEe
Q 036588 259 LEELYLSNNMFYGEIPSDTANC--SYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGT-I-LYVGHLLQLQWLD 334 (541)
Q Consensus 259 L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~-~~~~~~~~L~~L~ 334 (541)
++.++++++.+. +..+..+ ++++.+++.++.+....+. +..+++|++|++++|.+... . ..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 455555554432 1222333 4555555555554433322 33455555555555544321 1 1244455555555
Q ss_pred ccCccccCCCCcccCCCCcceEEEcccC-cCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCC
Q 036588 335 LSDNQLSGSLPSFKFNMPLLQFLDLSSN-RLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNF 413 (541)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 413 (541)
+++|.+....+..+..+++|++|++++| .+++......+..+++|++|++.+|. .+
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~-----------------------~l 181 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF-----------------------DF 181 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT-----------------------TC
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC-----------------------Cc
Confidence 5555443333333344455555555554 23321122223344444444444440 44
Q ss_pred CCc-cchhhhccC-CCcEEEccccc--cc--cccCCCcccCCcceEeccCCc-CCCCCCccccCCCCccEeeCCCCcccc
Q 036588 414 PGA-IPKEISNLT-KLEKLDLQYNR--LQ--GTIPYAGHLFQLQWLDLSDNQ-LSGSLPSFKFKMPLLQFLDLSSNRLST 486 (541)
Q Consensus 414 ~~~-~~~~l~~~~-~L~~L~l~~~~--~~--~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~ 486 (541)
+.. .+..+..++ +|++|++++|. +. .....+..+++|+.|++++|. +++..+..+..+++|++|++++|....
T Consensus 182 ~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 261 (336)
T 2ast_B 182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 261 (336)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC
Confidence 321 233344444 55555555542 11 111113344455555555554 333333344445555555555553111
Q ss_pred ccCcccccCCcccceeeeccceecccCCCCCCCc-cccceEEeecccccccCCC
Q 036588 487 ELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNC-SYLRILVVQFNNFSGAIPK 539 (541)
Q Consensus 487 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~p~ 539 (541)
......+..+++|+.|++++| +. .+.+..+ ..++.|++++|.+++..|+
T Consensus 262 ~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 262 PETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp GGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred HHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCC
Confidence 111112344555555555555 11 1223332 2244444555555555444
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3e-19 Score=164.90 Aligned_cols=202 Identities=23% Similarity=0.244 Sum_probs=135.4
Q ss_pred ccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCcc
Q 036588 301 ISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLE 380 (541)
Q Consensus 301 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 380 (541)
+..+++++.++++++.+......+ .++++.|++++|.+....+..+..+++|+.|++++|.++ .++.. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcCC
Confidence 456677888888877776444333 257778888877776655566777777777777777775 23222 4677777
Q ss_pred EEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCc
Q 036588 381 ELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQ 459 (541)
Q Consensus 381 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~ 459 (541)
.|++++|.+. .++..+..+++|++|++++|++....+..|..+++|+.|++++|++....+. +..+++|+.|++++|.
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 7777777775 4555666777777777777777766666677777777777777776654443 4566777777777777
Q ss_pred CCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceec
Q 036588 460 LSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 460 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 510 (541)
+....+..+..+++|++|++++|++ ..++.. +...++|+.+++++|++.
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l-~~ip~~-~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSL-YTIPKG-FFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCC-CCCCTT-TTTTCCCSEEECCSCCBC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcC-CccChh-hcccccCCeEEeCCCCcc
Confidence 7655555556677777777777776 345533 334556777777777765
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-19 Score=161.67 Aligned_cols=198 Identities=20% Similarity=0.187 Sum_probs=111.5
Q ss_pred CCeEEEEecCCcceeeeCCcccCCCCCcEecccccc-cCCccchhhhhcCCCcEEEeec-CccCCCCChhhhhhcCCCcE
Q 036588 21 YRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNW-FSGSIPASIFNMSSLLSINFIN-NALFGELPPNFCNHLSNLES 98 (541)
Q Consensus 21 ~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~ 98 (541)
..+++|+++++++++..+.+|+++++|++|++++|. ++...+..|.++++|++|++++ |.+ +.++...+.++++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l-~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL-TYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC-CEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe-eEcCHHHhCCCCCCCE
Confidence 367777777777776666667777777777777775 6544444666777777777776 555 3444444444677777
Q ss_pred eeccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCc-cccccCCccccCCCCcc-EEEeccCccccc
Q 036588 99 LFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKN-MFYGEIPSDIANCSYLR-ILVLQFNNFSGA 176 (541)
Q Consensus 99 L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~i~~~ 176 (541)
|++++|.++. +|. +..+++|+. |+.|++++| .+....+..|..+++|+ .|++++|.+...
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~----------------L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i 171 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDI----------------FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV 171 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCS----------------EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE
T ss_pred EeCCCCCCcc-ccc-ccccccccc----------------ccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc
Confidence 7777766653 333 444444431 123555555 55554445566666666 666666666522
Q ss_pred CCccccccCCCcEEEccCce-eeeeccC-CCCc-CCCCEEECCCCcccCCCCcccCCCCCccEEeccC
Q 036588 177 IPKEISNLTKLEKLDLQYNK-LQGTIPY-AGHL-YQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSS 241 (541)
Q Consensus 177 ~~~~l~~l~~L~~L~l~~~~-~~~~~~~-~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 241 (541)
.+..+.. ++|++|++++|. +....+. +..+ ++|+.|++++|.+.. ++.. .+++|+.|.+++
T Consensus 172 ~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~ 235 (239)
T 2xwt_C 172 QGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARN 235 (239)
T ss_dssp CTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTT
T ss_pred CHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccC
Confidence 2222222 566666666663 5544333 4555 566666666655542 2221 344555555544
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-19 Score=161.92 Aligned_cols=189 Identities=24% Similarity=0.272 Sum_probs=131.2
Q ss_pred CccccceeeeCCCCCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCC
Q 036588 7 SVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELP 86 (541)
Q Consensus 7 ~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 86 (541)
.|+.|.|-+|.. ..++++++++.++ .+|..+. ++++.|+++++.+++..+..+.++++|++|++++|.+.+ ++
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~ 75 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LS 75 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CC
T ss_pred cCCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cC
Confidence 477899999853 4678999999998 5666565 689999999999987777788999999999999998854 44
Q ss_pred hhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEE
Q 036588 87 PNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRIL 166 (541)
Q Consensus 87 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 166 (541)
...+.++++|++|++++|.++...+..+..+++|++ |++++|.+....+..+..+++|+.|
T Consensus 76 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~-------------------L~L~~N~l~~~~~~~~~~l~~L~~L 136 (251)
T 3m19_A 76 AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDK-------------------LYLGGNQLKSLPSGVFDRLTKLKEL 136 (251)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE-------------------EECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred HhHhccCCcCCEEECCCCcccccChhHhcccCCCCE-------------------EEcCCCcCCCcChhHhccCCcccEE
Confidence 444444889999999888888666666777777766 4444455554444456666777777
Q ss_pred EeccCcccccCCccccccCCCcEEEccCceeeeeccC-CCCcCCCCEEECCCCccc
Q 036588 167 VLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPY-AGHLYQLQWLDLSDNQLS 221 (541)
Q Consensus 167 ~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~ 221 (541)
++++|.+....+..+..+++|++|++++|.+....+. +..+++|+.|++++|.+.
T Consensus 137 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred ECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 7777766644444566666666666666665544432 445555555555555543
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-19 Score=170.40 Aligned_cols=224 Identities=20% Similarity=0.165 Sum_probs=159.8
Q ss_pred CccEEEeeCCcccccc----ccccccCCCcEEeccCccccCCCCccc--CCCCcceEEEcccCcCcCcCC---hhhhcCC
Q 036588 306 KLEKLDLQYNRLQGTI----LYVGHLLQLQWLDLSDNQLSGSLPSFK--FNMPLLQFLDLSSNRLSVELP---TNVFHNL 376 (541)
Q Consensus 306 ~L~~L~l~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~---~~~~~~~ 376 (541)
.++.+.+.++.+.... ......++|++|++++|.+....+..+ ..+++|++|++++|.+++..+ ...+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 4556666655543211 112334567777777777665555555 677888888888887764333 1233368
Q ss_pred CCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCc--c--chhhhccCCCcEEEccccccccccCC----CcccC
Q 036588 377 PFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGA--I--PKEISNLTKLEKLDLQYNRLQGTIPY----AGHLF 448 (541)
Q Consensus 377 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~--~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~ 448 (541)
++|++|++++|.+....+..+..+++|++|++++|++... . ...+..+++|++|++++|++...... +..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 8899999998888766677788888999999998886531 1 12346788899999999888633321 35678
Q ss_pred CcceEeccCCcCCCCCCccccCC---CCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCccccce
Q 036588 449 QLQWLDLSDNQLSGSLPSFKFKM---PLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRI 525 (541)
Q Consensus 449 ~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 525 (541)
+|+.|++++|.+....|..+..+ ++|++|++++|.+. .+|... . ++|+.|++++|++.+. |. +..+++|+.
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~-~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL-P--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC-C--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh-c--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 89999999999887766666665 79999999999985 577433 2 7999999999999853 33 678899999
Q ss_pred EEeecccccc
Q 036588 526 LVVQFNNFSG 535 (541)
Q Consensus 526 L~l~~~~~~~ 535 (541)
|++++|+++.
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 9999999874
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.81 E-value=9.4e-19 Score=161.55 Aligned_cols=176 Identities=31% Similarity=0.278 Sum_probs=77.3
Q ss_pred cccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEccc
Q 036588 282 YLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSS 361 (541)
Q Consensus 282 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 361 (541)
+++.|++++|.+....+..+..+++|+.|++++|.+..... ...+++|++|++++|.+. .++..+..+++|+.|++++
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~ 109 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 109 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCS
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCC
Confidence 44445555444443333444445555555555544432221 134444444444444443 2233334444444444444
Q ss_pred CcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEcccccccccc
Q 036588 362 NRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTI 441 (541)
Q Consensus 362 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 441 (541)
|.++ .++...|..+++|+.|++++|++....+..|..+++|+.|++++|++....+..|..+++|+.|++++|++....
T Consensus 110 N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip 188 (290)
T 1p9a_G 110 NRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188 (290)
T ss_dssp SCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccC
Confidence 4443 333333444444444444444444333333444444444444444444433334444444444444444444332
Q ss_pred CCCcccCCcceEeccCCcC
Q 036588 442 PYAGHLFQLQWLDLSDNQL 460 (541)
Q Consensus 442 ~~~~~~~~L~~L~l~~~~~ 460 (541)
..+...++|+.+++++|++
T Consensus 189 ~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 189 KGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTTTTTCCCSEEECCSCCB
T ss_pred hhhcccccCCeEEeCCCCc
Confidence 2333334444444444443
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.8e-21 Score=181.38 Aligned_cols=252 Identities=19% Similarity=0.181 Sum_probs=152.0
Q ss_pred EEEecCCcceeeeCCcccCCCCCcEecccccccCCccc----hhhhhcC-CCcEEEeecCccCCCCChhhhhhc-----C
Q 036588 25 ALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIP----ASIFNMS-SLLSINFINNALFGELPPNFCNHL-----S 94 (541)
Q Consensus 25 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~l-----~ 94 (541)
..+++.+++++.+|+.+...++|++|++++|.+++..+ ..+.+++ +|++|++++|.+.+..+..+.. + +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~-~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ-ILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHH-HHHTSCT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHH-HHhccCC
Confidence 35778888888777777777779999999988885555 6777788 8999999998886665655555 4 8
Q ss_pred CCcEeeccccccCccCCccC----CCC-CCCcEEecCCCccccccccCcceEEEecCccccccCCcc----ccC-CCCcc
Q 036588 95 NLESLFLKSNMFHGKIPSTL----SSC-KRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSD----IAN-CSYLR 164 (541)
Q Consensus 95 ~L~~L~l~~~~~~~~~~~~~----~~l-~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~-~~~L~ 164 (541)
+|++|++++|.++...+..+ ..+ ++|++|++++|. +.+..+.. +.. +++|+
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-------------------l~~~~~~~l~~~l~~~~~~L~ 141 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-------------------FSSKSSSEFKQAFSNLPASIT 141 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-------------------GGGSCHHHHHHHHTTSCTTCC
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-------------------CCcHHHHHHHHHHHhCCCcee
Confidence 88899998888876555433 333 566665555444 43332222 222 24555
Q ss_pred EEEeccCcccccCCccc----cccC-CCcEEEccCceeeeecc-----CCCCc-CCCCEEECCCCcccCC----CCcccC
Q 036588 165 ILVLQFNNFSGAIPKEI----SNLT-KLEKLDLQYNKLQGTIP-----YAGHL-YQLQWLDLSDNQLSGS----LPSFKF 229 (541)
Q Consensus 165 ~L~l~~~~i~~~~~~~l----~~l~-~L~~L~l~~~~~~~~~~-----~~~~~-~~L~~L~l~~~~~~~~----~~~~~~ 229 (541)
+|++++|.+.+.....+ ..++ +|++|++++|.+.+... .+..+ ++|+.|++++|.+... ++..+.
T Consensus 142 ~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~ 221 (362)
T 3goz_A 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS 221 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred EEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence 55555555553322222 2233 56666666555543222 12233 3666666666665532 122222
Q ss_pred C-CCCccEEeccCCcccCcCC---hhhhccCCCCcEEEecCccccc-------cCCCCCcCcccccEEEecccccCCC
Q 036588 230 K-MPLLQFLDLSSNRLSAELP---TNVFHNLPFLEELYLSNNMFYG-------EIPSDTANCSYLRILVLRFNNFSGA 296 (541)
Q Consensus 230 ~-~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~-------~~~~~~~~~~~L~~L~l~~~~~~~~ 296 (541)
. .++|++|++++|.+.+... ...+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+...
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 2 3466777777766643222 1234556777777777776332 2334566778888888888887654
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-18 Score=156.44 Aligned_cols=178 Identities=28% Similarity=0.239 Sum_probs=108.1
Q ss_pred CCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEE
Q 036588 328 LQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILV 407 (541)
Q Consensus 328 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 407 (541)
...++++++++.+.. ++..+ .+.++.|++++|.++ .+....+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 14 ~~~~~l~~~~~~l~~-~p~~~--~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLDS-VPSGI--PADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCSS-CCSCC--CTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCccc-cCCCC--CCCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 345667777666653 22222 246677777777665 34444555667777777777766655555566666777777
Q ss_pred cccCCCCCccchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCcccc
Q 036588 408 LKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLST 486 (541)
Q Consensus 408 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 486 (541)
+++|.+....+..|..+++|+.|++++|++....+. +..+++|+.|++++|.+....+..+..+++|++|++++|.+.+
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 777766665556666666666666666666544443 3556666666666666664444455666666666666666633
Q ss_pred ccCcccccCCcccceeeeccceec
Q 036588 487 ELPTNVFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 487 ~~~~~~~~~~~~L~~L~l~~~~~~ 510 (541)
++...+..+++|+.|++++|++.
T Consensus 170 -~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 170 -VPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp -CCTTTTTTCTTCCEEECCSCCBC
T ss_pred -cCHHHHhCCCCCCEEEeeCCcee
Confidence 44345556666666666666665
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=9.6e-19 Score=163.20 Aligned_cols=195 Identities=24% Similarity=0.284 Sum_probs=155.5
Q ss_pred ccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCcc
Q 036588 301 ISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLE 380 (541)
Q Consensus 301 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 380 (541)
...+++|+.|+++++.+... +.+..+++|++|++++|.+....+ +..+++|+.|++++|.+++ ++ .+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~--~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS--AIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG--GGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccCc-hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch--hhcCCCCCC
Confidence 45678999999999988754 468888999999999998875443 7788999999999998863 33 466889999
Q ss_pred EEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcC
Q 036588 381 ELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQL 460 (541)
Q Consensus 381 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 460 (541)
.|++++|.+.+. ..+..+++|++|++++|.+....+ +..+++|+.|++++|.+....+ +..+++|+.|++++|.+
T Consensus 111 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 111 TLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred EEECCCCCCCCc--hhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCcc
Confidence 999999988643 247888999999999998875543 7888999999999998875444 77888899999999988
Q ss_pred CCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecc
Q 036588 461 SGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYG 511 (541)
Q Consensus 461 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 511 (541)
....+ +..+++|++|++++|++.+ ++ .+..+++|+.|++++|++.+
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~-~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISD-VS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCB-CG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CcChh--hcCCCCCCEEEccCCccCc-cc--cccCCCCCCEEEccCCeeec
Confidence 75433 6788899999999998854 43 36788899999999999874
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.5e-21 Score=186.48 Aligned_cols=260 Identities=20% Similarity=0.133 Sum_probs=142.5
Q ss_pred CeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchh----hhhcCCCcEEEeecCcc---CCCCChhh-----
Q 036588 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPAS----IFNMSSLLSINFINNAL---FGELPPNF----- 89 (541)
Q Consensus 22 ~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~---~~~~~~~~----- 89 (541)
.++...+....+. .++..+..+++|++|++++|.+++..+.. +.++++|++|++++|.+ .+.+|..+
T Consensus 10 ~L~~~~l~~~~~~-~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~ 88 (386)
T 2ca6_A 10 SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88 (386)
T ss_dssp CCEESSCCSHHHH-TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHH
T ss_pred ccccCCCCHHHHH-HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHH
Confidence 3444444444444 45666778888888888888877554433 56788888888887643 23344444
Q ss_pred -hhhcCCCcEeeccccccCc----cCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCC----
Q 036588 90 -CNHLSNLESLFLKSNMFHG----KIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANC---- 160 (541)
Q Consensus 90 -~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---- 160 (541)
+..+++|++|++++|.+.. .++..+.++++|++|++++|.+..... ..++..+..+
T Consensus 89 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~---------------~~l~~~l~~l~~~~ 153 (386)
T 2ca6_A 89 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG---------------AKIARALQELAVNK 153 (386)
T ss_dssp HHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH---------------HHHHHHHHHHHHHH
T ss_pred HHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH---------------HHHHHHHHHHhhhh
Confidence 1347888888888888775 345566777777776666555420000 0011111122
Q ss_pred -----CCccEEEeccCcccc-cCC---ccccccCCCcEEEccCceeee-----ecc-CCCCcCCCCEEECCCCccc----
Q 036588 161 -----SYLRILVLQFNNFSG-AIP---KEISNLTKLEKLDLQYNKLQG-----TIP-YAGHLYQLQWLDLSDNQLS---- 221 (541)
Q Consensus 161 -----~~L~~L~l~~~~i~~-~~~---~~l~~l~~L~~L~l~~~~~~~-----~~~-~~~~~~~L~~L~l~~~~~~---- 221 (541)
++|++|++++|.+.+ ..+ ..+..+++|++|++++|.+.. ..+ .+..+++|+.|++++|.+.
T Consensus 154 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~ 233 (386)
T 2ca6_A 154 KAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS 233 (386)
T ss_dssp HHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH
T ss_pred hcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHH
Confidence 555555555555442 111 234445555555555555441 122 3455556666666665553
Q ss_pred CCCCcccCCCCCccEEeccCCcccCcCCh---hhh--ccCCCCcEEEecCccccc----cCCCCC-cCcccccEEEeccc
Q 036588 222 GSLPSFKFKMPLLQFLDLSSNRLSAELPT---NVF--HNLPFLEELYLSNNMFYG----EIPSDT-ANCSYLRILVLRFN 291 (541)
Q Consensus 222 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~--~~~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~l~~~ 291 (541)
..++..+..+++|++|++++|.+...... ..+ ..+++|+.|++++|.+.. ..+..+ ..+++|++|++++|
T Consensus 234 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 234 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp HHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred HHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 23344455566666666666655322111 112 225666666666666654 244444 34567777777777
Q ss_pred ccCCCc
Q 036588 292 NFSGAI 297 (541)
Q Consensus 292 ~~~~~~ 297 (541)
.+....
T Consensus 314 ~l~~~~ 319 (386)
T 2ca6_A 314 RFSEED 319 (386)
T ss_dssp BSCTTS
T ss_pred cCCcch
Confidence 666443
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.79 E-value=9.8e-19 Score=157.16 Aligned_cols=154 Identities=17% Similarity=0.143 Sum_probs=74.5
Q ss_pred cccCCCCccEEEecc-CcccccCCccccccCCCcEEEccCceeeeeccCCCCcCCCC---EEECCCC-cccCCCCcccCC
Q 036588 156 DIANCSYLRILVLQF-NNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQ---WLDLSDN-QLSGSLPSFKFK 230 (541)
Q Consensus 156 ~~~~~~~L~~L~l~~-~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~ 230 (541)
.|..+++|++|++++ +.+....+..+..+++|++|++++|.+.... .+..+++|+ .|++++| .+....+..+..
T Consensus 75 ~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~ 153 (239)
T 2xwt_C 75 SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFP-DLTKVYSTDIFFILEITDNPYMTSIPVNAFQG 153 (239)
T ss_dssp TEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCC-CCTTCCBCCSEEEEEEESCTTCCEECTTTTTT
T ss_pred HcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcccc-ccccccccccccEEECCCCcchhhcCcccccc
Confidence 344444444444444 4444333333444444444444444443322 133344444 5555554 444333334445
Q ss_pred CCCcc-EEeccCCcccCcCChhhhccCCCCcEEEecCcc-ccccCCCCCcCc-ccccEEEecccccCCCccccccccCCc
Q 036588 231 MPLLQ-FLDLSSNRLSAELPTNVFHNLPFLEELYLSNNM-FYGEIPSDTANC-SYLRILVLRFNNFSGAIPKEISNLTKL 307 (541)
Q Consensus 231 ~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~l~~L 307 (541)
+++|+ .+++++|.+. .++...|.. ++|+.|++++|. +....+..|..+ ++|+.|++++|.+...... .+++|
T Consensus 154 l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L 228 (239)
T 2xwt_C 154 LCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHL 228 (239)
T ss_dssp TBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTC
T ss_pred hhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccC
Confidence 55555 5555555553 444444444 556666666663 554455556666 6666666666665532221 45566
Q ss_pred cEEEeeCC
Q 036588 308 EKLDLQYN 315 (541)
Q Consensus 308 ~~L~l~~~ 315 (541)
+.|++.++
T Consensus 229 ~~L~l~~~ 236 (239)
T 2xwt_C 229 KELIARNT 236 (239)
T ss_dssp SEEECTTC
T ss_pred ceeeccCc
Confidence 66665544
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-18 Score=161.97 Aligned_cols=195 Identities=22% Similarity=0.249 Sum_probs=165.1
Q ss_pred CcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceE
Q 036588 277 TANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQF 356 (541)
Q Consensus 277 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 356 (541)
...+++|++|+++++.+... + .+..+++|+.|++++|.+..... +..+++|++|++++|.+... ..+..+++|+.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 45678999999999988753 3 57889999999999999886655 88999999999999998753 36788999999
Q ss_pred EEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccc
Q 036588 357 LDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNR 436 (541)
Q Consensus 357 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 436 (541)
|++++|.+++ ++. +..+++|+.|++++|.+.+.. .+..+++|++|++++|.+....+ +..+++|+.|++++|.
T Consensus 112 L~l~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 112 LDLTSTQITD-VTP--LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EECTTSCCCC-CGG--GTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EECCCCCCCC-chh--hcCCCCCCEEECCCCccCcCc--cccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence 9999999873 433 678999999999999986432 38899999999999999986544 8899999999999999
Q ss_pred cccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCcccc
Q 036588 437 LQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLST 486 (541)
Q Consensus 437 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 486 (541)
+....+ +..+++|+.|++++|.+.... .+..+++|+.|++++|++.+
T Consensus 185 l~~~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISDISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cCcChh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 875443 788999999999999998544 37889999999999999844
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.3e-19 Score=165.51 Aligned_cols=221 Identities=19% Similarity=0.145 Sum_probs=175.7
Q ss_pred CCeEEEEecCCcceeee-CC--cccCCCCCcEecccccccCCccchhh--hhcCCCcEEEeecCccCCCCC----hhhhh
Q 036588 21 YRVTALNISGLNLTVTI-PS--ELGNLSSLQTLDLSFNWFSGSIPASI--FNMSSLLSINFINNALFGELP----PNFCN 91 (541)
Q Consensus 21 ~~l~~L~l~~~~i~~~~-~~--~~~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~~ 91 (541)
..++.+.+.++.++... .. .+..+++|++|++++|.+.+..|..+ .++++|++|++++|.+.+..+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~- 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW- 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-
Confidence 35788888888876321 11 12345679999999999988888888 889999999999999865544 3334
Q ss_pred hcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCccc---------cccccCcceEEEecCccccccCC--c-cccC
Q 036588 92 HLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFF---------WDHTKRNWQQLYLSKNMFYGEIP--S-DIAN 159 (541)
Q Consensus 92 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~---------~~~~~~~L~~L~l~~~~~~~~~~--~-~~~~ 159 (541)
.+++|++|++++|.+....+..++.+++|++|++++|.+. .....++|++|++++|.+..... . .+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 4899999999999998888889999999999999999753 22467889999999998863211 1 2577
Q ss_pred CCCccEEEeccCcccccCCcccccc---CCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccE
Q 036588 160 CSYLRILVLQFNNFSGAIPKEISNL---TKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQF 236 (541)
Q Consensus 160 ~~~L~~L~l~~~~i~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 236 (541)
+++|++|++++|.+.+..|..+..+ ++|++|++++|.++..+..+. ++|+.|++++|.+.+. +. +..+++|+.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 8999999999999997777777776 699999999999986655453 8999999999999853 33 677899999
Q ss_pred EeccCCcccC
Q 036588 237 LDLSSNRLSA 246 (541)
Q Consensus 237 L~l~~~~~~~ 246 (541)
|++++|.+.+
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 9999998753
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.1e-20 Score=177.07 Aligned_cols=225 Identities=19% Similarity=0.157 Sum_probs=138.5
Q ss_pred EecccccccCCccchhhhhcCCCcEEEeecCccCCCCCh---hhhhhcC-CCcEeeccccccCccCCccCCCC-----CC
Q 036588 49 TLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPP---NFCNHLS-NLESLFLKSNMFHGKIPSTLSSC-----KR 119 (541)
Q Consensus 49 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~ 119 (541)
+++++.+.+++.+|..+...++|++|++++|.+.+..+. ..+.+++ +|++|++++|.+....+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 567888888877777777777799999999988544442 3333377 89999999998886666555543 55
Q ss_pred CcEEecCCCccccccccCcceEEEecCccccccCCcc----ccCC-CCccEEEeccCcccccCCccccc-----cCCCcE
Q 036588 120 LRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSD----IANC-SYLRILVLQFNNFSGAIPKEISN-----LTKLEK 189 (541)
Q Consensus 120 L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~i~~~~~~~l~~-----l~~L~~ 189 (541)
|++ |++++|.+.+..+.. +..+ ++|+.|++++|.+.+..+..++. .++|++
T Consensus 82 L~~-------------------L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 142 (362)
T 3goz_A 82 VTS-------------------LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142 (362)
T ss_dssp CCE-------------------EECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCE
T ss_pred ccE-------------------EECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeE
Confidence 555 666666666544433 3444 78888888888887665554443 258888
Q ss_pred EEccCceeeeec-----cCCCCcC-CCCEEECCCCcccCCCCc----ccCCC-CCccEEeccCCcccCcC----Chhhhc
Q 036588 190 LDLQYNKLQGTI-----PYAGHLY-QLQWLDLSDNQLSGSLPS----FKFKM-PLLQFLDLSSNRLSAEL----PTNVFH 254 (541)
Q Consensus 190 L~l~~~~~~~~~-----~~~~~~~-~L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~~----~~~~~~ 254 (541)
|++++|.+.+.. ..+...+ +|++|++++|.+....+. .+..+ ++|++|++++|.+.+.. +..+..
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 888888776322 1123343 777777777777644432 22334 47777777777664321 112212
Q ss_pred cCCCCcEEEecCccccccCC----CCCcCcccccEEEecccc
Q 036588 255 NLPFLEELYLSNNMFYGEIP----SDTANCSYLRILVLRFNN 292 (541)
Q Consensus 255 ~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~ 292 (541)
..++|++|++++|.+....+ ..+..+++|+.|++++|.
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 23466666666665543222 223444556666665555
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.78 E-value=7.6e-21 Score=184.12 Aligned_cols=242 Identities=20% Similarity=0.153 Sum_probs=114.7
Q ss_pred CCCCCcCcccccEEEecccccCCCcc----ccccccCCccEEEeeCCcccccc---c-c-------ccccCCCcEEeccC
Q 036588 273 IPSDTANCSYLRILVLRFNNFSGAIP----KEISNLTKLEKLDLQYNRLQGTI---L-Y-------VGHLLQLQWLDLSD 337 (541)
Q Consensus 273 ~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~---~-~-------~~~~~~L~~L~l~~ 337 (541)
.+..+..+++|++|++++|.+....+ ..+..+++|+.|++++|.+.... + . +..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 34445566777777777776654422 23556677777777766433211 1 1 23455555555555
Q ss_pred ccccC----CCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCC---------ccCC
Q 036588 338 NQLSG----SLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNC---------SYLR 404 (541)
Q Consensus 338 ~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---------~~L~ 404 (541)
|.+.. .++..+..+++|++|++++|.++...+... +..+..+ ++|+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l---------------------~~~l~~l~~~~~~~~~~~L~ 162 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI---------------------ARALQELAVNKKAKNAPPLR 162 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHH---------------------HHHHHHHHHHHHHHTCCCCC
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHH---------------------HHHHHHHhhhhhcccCCCCc
Confidence 55443 122233444555555555554431111111 0111111 4555
Q ss_pred eEEcccCCCCC-ccc---hhhhccCCCcEEEcccccccc-----ccC-CCcccCCcceEeccCCcCC----CCCCccccC
Q 036588 405 ILVLKFNNFPG-AIP---KEISNLTKLEKLDLQYNRLQG-----TIP-YAGHLFQLQWLDLSDNQLS----GSLPSFKFK 470 (541)
Q Consensus 405 ~L~l~~~~~~~-~~~---~~l~~~~~L~~L~l~~~~~~~-----~~~-~~~~~~~L~~L~l~~~~~~----~~~~~~~~~ 470 (541)
+|++++|++.. ..+ ..+..+++|++|++++|.+.. ..+ .+..+++|+.|++++|.+. ..++..+..
T Consensus 163 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~ 242 (386)
T 2ca6_A 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242 (386)
T ss_dssp EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc
Confidence 55555555442 111 234445555555555555441 122 3444555555555555543 233444455
Q ss_pred CCCccEeeCCCCccccc----cCcccc--cCCcccceeeeccceecc----cCCCCC-CCccccceEEeeccccccc
Q 036588 471 MPLLQFLDLSSNRLSTE----LPTNVF--HNLPFLEELYLSNNMFYG----EIPSDT-PNCSYLRILVVQFNNFSGA 536 (541)
Q Consensus 471 ~~~L~~L~l~~~~~~~~----~~~~~~--~~~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~l~~~~~~~~ 536 (541)
+++|++|++++|.+.+. ++ ..+ ..+++|+.|++++|.+.+ .++..+ .++++|+.|++++|++.+.
T Consensus 243 ~~~L~~L~L~~n~i~~~~~~~l~-~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 243 WPNLRELGLNDCLLSARGAAAVV-DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp CTTCCEEECTTCCCCHHHHHHHH-HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred CCCcCEEECCCCCCchhhHHHHH-HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 55555555555555332 11 122 125555555555555554 244444 3355555555555555543
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=146.24 Aligned_cols=193 Identities=24% Similarity=0.202 Sum_probs=148.6
Q ss_pred cEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEccc
Q 036588 331 QWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKF 410 (541)
Q Consensus 331 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 410 (541)
+.++.+++.+... +.. -.+++++|++++|.++ .++...+..+++|++|++.+|.+....+..|..+++|++|++++
T Consensus 10 ~~v~c~~~~l~~~-p~~--~~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTSV-PTG--IPAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSSC-CSC--CCTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccCC-CCC--CCCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 4566666666533 222 2468899999999887 66666777889999999999988765556678889999999999
Q ss_pred CCCCCccchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccC
Q 036588 411 NNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELP 489 (541)
Q Consensus 411 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 489 (541)
|.+....+..+..+++|+.|++++|.+....+. +..+++|+.|++++|.+....+..+..+++|++|++++|++.+
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--- 162 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--- 162 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence 988877777788889999999999988765554 5778889999999988886666667888899999998887633
Q ss_pred cccccCCcccceeeeccceecccCCCCCCCccccceEEeecccccccCCC
Q 036588 490 TNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPK 539 (541)
Q Consensus 490 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~ 539 (541)
.+++|+.|+++.|.+.+.+|+.+..++. ++..|...+..+.
T Consensus 163 -----~~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~~~~~ 203 (208)
T 2o6s_A 163 -----TCPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSGKPVR 203 (208)
T ss_dssp -----CTTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTCCBGG
T ss_pred -----CCCCHHHHHHHHHhCCceeeccCccccC----CccccccCCCcce
Confidence 4568888888888888888888887765 5666665554443
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.5e-17 Score=155.82 Aligned_cols=169 Identities=18% Similarity=0.103 Sum_probs=90.6
Q ss_pred EEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcE-eecccc
Q 036588 26 LNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLES-LFLKSN 104 (541)
Q Consensus 26 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~-L~l~~~ 104 (541)
++-++++++ .+|..+ .+++++|+|++|.++...+.+|.++++|++|++++|.+.+.+|...+.++++++. +.+..+
T Consensus 14 v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 14 FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 333455566 445544 3567888888888773333467778888888888777766666666655777664 344556
Q ss_pred ccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEecc-CcccccCCccccc
Q 036588 105 MFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQF-NNFSGAIPKEISN 183 (541)
Q Consensus 105 ~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~i~~~~~~~l~~ 183 (541)
+++...+..|..+++|++ |++++|.+....+..+....++..+++.+ +.+....+..+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~-------------------L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~ 151 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQY-------------------LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151 (350)
T ss_dssp TCCEECTTSBCCCTTCCE-------------------EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTT
T ss_pred cccccCchhhhhcccccc-------------------ccccccccccCCchhhcccchhhhhhhccccccccccccchhh
Confidence 666555666666666666 33334444433333333444455555543 2333222223333
Q ss_pred cC-CCcEEEccCceeeeeccCCCCcCCCCEEECC
Q 036588 184 LT-KLEKLDLQYNKLQGTIPYAGHLYQLQWLDLS 216 (541)
Q Consensus 184 l~-~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 216 (541)
+. .++.|++++|.++.+........+|+.+.+.
T Consensus 152 ~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~ 185 (350)
T 4ay9_X 152 LSFESVILWLNKNGIQEIHNSAFNGTQLDELNLS 185 (350)
T ss_dssp SBSSCEEEECCSSCCCEECTTSSTTEEEEEEECT
T ss_pred cchhhhhhccccccccCCChhhccccchhHHhhc
Confidence 32 3444555555544443333333444444443
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.9e-17 Score=144.09 Aligned_cols=156 Identities=27% Similarity=0.254 Sum_probs=93.6
Q ss_pred CCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCC-CcccCCcceEec
Q 036588 377 PFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDL 455 (541)
Q Consensus 377 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l 455 (541)
++|++|++.+|.+.+..+..+..+++|++|++++|++....+..|..+++|++|++++|.+....+. +..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 4566666666666544444456666666666666666655555556666666666666666544333 455666666666
Q ss_pred cCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeecccccc
Q 036588 456 SDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSG 535 (541)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 535 (541)
++|.+....+..+..+++|++|++++|.+. .++...+..+++|+.|++++|++.+ .++.|+.|+++.|.++|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCc
Confidence 666666544445566666666666666663 3443445566666666666665542 24556666666666666
Q ss_pred cCCCC
Q 036588 536 AIPKE 540 (541)
Q Consensus 536 ~~p~~ 540 (541)
.+|++
T Consensus 180 ~ip~~ 184 (208)
T 2o6s_A 180 VVRNS 184 (208)
T ss_dssp TBBCT
T ss_pred eeecc
Confidence 66654
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.5e-17 Score=153.93 Aligned_cols=239 Identities=20% Similarity=0.163 Sum_probs=182.5
Q ss_pred cEEEecccccCCCccccccccCCccEEEeeCCcccccccc-ccccCCCcEEeccCccccCCC-CcccCCCCcceEE-Ecc
Q 036588 284 RILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILY-VGHLLQLQWLDLSDNQLSGSL-PSFKFNMPLLQFL-DLS 360 (541)
Q Consensus 284 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L-~l~ 360 (541)
+.++.++++++ .+|..+ .+++++|++++|.+...... +..+++|++|++++|.+...+ ...|.+++++.++ .+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56777777777 455544 36899999999999876653 889999999999999876543 4567788888764 555
Q ss_pred cCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEccc-CCCCCccchhhhcc-CCCcEEEccccccc
Q 036588 361 SNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKF-NNFPGAIPKEISNL-TKLEKLDLQYNRLQ 438 (541)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~-~~L~~L~l~~~~~~ 438 (541)
+|.++ .++...|..+++|+++++.+|++....+..+.....+..+++.+ +.+.......|..+ ..++.|++++|++.
T Consensus 89 ~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 67776 67777888999999999999998766555666777788888865 46665666667765 46899999999998
Q ss_pred cccCCCcccCCcceEeccC-CcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCC
Q 036588 439 GTIPYAGHLFQLQWLDLSD-NQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDT 517 (541)
Q Consensus 439 ~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 517 (541)
...+......+|+.+.+.+ +.+....+.++..+++|++|++++|++ +.+|...+. +|+.|.+.++.....+| .+
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l-~~lp~~~~~---~L~~L~~l~~~~l~~lP-~l 242 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI-HSLPSYGLE---NLKKLRARSTYNLKKLP-TL 242 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC-CCCCSSSCT---TCCEEECTTCTTCCCCC-CT
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc-CccChhhhc---cchHhhhccCCCcCcCC-Cc
Confidence 7666666778899999986 456645556788999999999999998 557766555 45555555555554666 58
Q ss_pred CCccccceEEeecc
Q 036588 518 PNCSYLRILVVQFN 531 (541)
Q Consensus 518 ~~~~~L~~L~l~~~ 531 (541)
..+++|+.+++.++
T Consensus 243 ~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 243 EKLVALMEASLTYP 256 (350)
T ss_dssp TTCCSCCEEECSCH
T ss_pred hhCcChhhCcCCCC
Confidence 88999999998753
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.8e-16 Score=149.46 Aligned_cols=335 Identities=16% Similarity=0.076 Sum_probs=168.7
Q ss_pred cceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCccCC
Q 036588 32 NLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIP 111 (541)
Q Consensus 32 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 111 (541)
+++.+-..+|.+|++|+.+.+..+ ++.....+|.++.+|+.++++++- +.++...+.+|++|+.+.++.+ +.....
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~l--~~I~~~aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDSV--KMIGRCTFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTTC--CEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCCc--eEccchhhcccccchhhcccCc-eeeecc
Confidence 345555566777777777777543 443445667777777777776542 3445555555667766665533 333444
Q ss_pred ccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEE
Q 036588 112 STLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLD 191 (541)
Q Consensus 112 ~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~ 191 (541)
..|..+..++.... .....+....|..|++|+.+.+..+. .......|..+.+|+.+.
T Consensus 134 ~aF~~~~~~~~~~~---------------------~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~ 191 (394)
T 4fs7_A 134 EAFKGCDFKEITIP---------------------EGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIK 191 (394)
T ss_dssp TTTTTCCCSEEECC---------------------TTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCC
T ss_pred eeeecccccccccC---------------------ccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEE
Confidence 44544433222111 11112334467777777777776542 224445666677777777
Q ss_pred ccCceeeeecc-CCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCcccc
Q 036588 192 LQYNKLQGTIP-YAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFY 270 (541)
Q Consensus 192 l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 270 (541)
+..+ +..... .+..+..|+.+.+..+.. ..........+|+.+.+.... ..+....|..+..++.+.+..+..
T Consensus 192 l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~--~i~~~~~~~~~l~~i~ip~~~--~~i~~~~f~~~~~l~~~~~~~~~~- 265 (394)
T 4fs7_A 192 LPRN-LKIIRDYCFAECILLENMEFPNSLY--YLGDFALSKTGVKNIIIPDSF--TELGKSVFYGCTDLESISIQNNKL- 265 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCBCCCCTTCC--EECTTTTTTCCCCEEEECTTC--CEECSSTTTTCSSCCEEEECCTTC-
T ss_pred cCCC-ceEeCchhhccccccceeecCCCce--EeehhhcccCCCceEEECCCc--eecccccccccccceeEEcCCCcc-
Confidence 6654 222222 245555566555543321 112223334455555554322 123334445555555555544322
Q ss_pred ccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCC
Q 036588 271 GEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFN 350 (541)
Q Consensus 271 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 350 (541)
......|..+..++.+......+. ... +..+.+|+.+.+.++ +..+...+|.+
T Consensus 266 ~i~~~~F~~~~~l~~~~~~~~~i~---~~~-----------------------F~~~~~L~~i~l~~~-i~~I~~~aF~~ 318 (394)
T 4fs7_A 266 RIGGSLFYNCSGLKKVIYGSVIVP---EKT-----------------------FYGCSSLTEVKLLDS-VKFIGEEAFES 318 (394)
T ss_dssp EECSCTTTTCTTCCEEEECSSEEC---TTT-----------------------TTTCTTCCEEEECTT-CCEECTTTTTT
T ss_pred eeeccccccccccceeccCceeec---ccc-----------------------ccccccccccccccc-cceechhhhcC
Confidence 233444555555555444333221 112 334444444444332 22233445555
Q ss_pred CCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEE
Q 036588 351 MPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKL 430 (541)
Q Consensus 351 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 430 (541)
|.+|+.+.+..+ ++ .+...+|.+|.+|+.+.+..+ +......+|.+|++|+.+++..+ +. ....+|.+|++|+.+
T Consensus 319 c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 319 CTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 666666666533 32 455556666666666666554 33344456667777777766543 11 122356666666654
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-16 Score=141.53 Aligned_cols=161 Identities=22% Similarity=0.255 Sum_probs=97.7
Q ss_pred CCCCCCCccccceeeeCCCCCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCc
Q 036588 1 NWNTSSSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNA 80 (541)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 80 (541)
.|..+...|.|.++.|... .++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.
T Consensus 11 ~~~~~~~~Cs~~~v~c~~~------------~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~ 75 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRSK------------RHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ 75 (229)
T ss_dssp CCCCTTCEEETTEEECTTS------------CCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCCCEEeCCEeEccCC------------CcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC
Confidence 3778889999999988642 233 3343332 677777777777776667777777777777777777
Q ss_pred cCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCC
Q 036588 81 LFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANC 160 (541)
Q Consensus 81 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 160 (541)
+ +.+|...+.++++|++|++++|+++...+..+..+++|++|++ ++|.+. .+|..+..+
T Consensus 76 l-~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L-------------------s~N~l~-~lp~~~~~l 134 (229)
T 3e6j_A 76 L-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM-------------------CCNKLT-ELPRGIERL 134 (229)
T ss_dssp C-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC-------------------CSSCCC-SCCTTGGGC
T ss_pred C-CCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec-------------------cCCccc-ccCcccccC
Confidence 6 4555555555777777777777776555555566666555333 333333 234444555
Q ss_pred CCccEEEeccCcccccCCccccccCCCcEEEccCcee
Q 036588 161 SYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKL 197 (541)
Q Consensus 161 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~ 197 (541)
++|+.|++++|.+....+..+..+++|+.|++.+|.+
T Consensus 135 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 135 THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred CCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 5555555555555533333445555555555555443
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.5e-17 Score=163.68 Aligned_cols=199 Identities=21% Similarity=0.310 Sum_probs=134.5
Q ss_pred CCCCCCcc-----cccee-eeCCCCCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEE
Q 036588 2 WNTSSSVC-----NWTGI-TCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSIN 75 (541)
Q Consensus 2 ~~~~~~~~-----~~~~~-~~~~~~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 75 (541)
|.....+| .|.++ .|.. .++++|+++++++++ +|..+ +++|++|++++|.++ .+| ..+++|++|+
T Consensus 36 W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~ 106 (571)
T 3cvr_A 36 WEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLD 106 (571)
T ss_dssp HHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEE
T ss_pred HhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEE
Confidence 66666777 78888 6763 489999999999996 66655 388999999999998 777 4578999999
Q ss_pred eecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCc
Q 036588 76 FINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPS 155 (541)
Q Consensus 76 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 155 (541)
+++|.+. .+|. +. .+|++|++++|.++. +|. .+++|++ |++++|.+.. ++.
T Consensus 107 Ls~N~l~-~ip~-l~---~~L~~L~Ls~N~l~~-lp~---~l~~L~~-------------------L~Ls~N~l~~-lp~ 157 (571)
T 3cvr_A 107 ACDNRLS-TLPE-LP---ASLKHLDVDNNQLTM-LPE---LPALLEY-------------------INADNNQLTM-LPE 157 (571)
T ss_dssp CCSSCCS-CCCC-CC---TTCCEEECCSSCCSC-CCC---CCTTCCE-------------------EECCSSCCSC-CCC
T ss_pred ccCCCCC-Ccch-hh---cCCCEEECCCCcCCC-CCC---cCccccE-------------------EeCCCCccCc-CCC
Confidence 9999885 4777 43 389999999998875 444 4566666 4444555443 232
Q ss_pred cccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeeeccCCCCcCCC-------CEEECCCCcccCCCCccc
Q 036588 156 DIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQL-------QWLDLSDNQLSGSLPSFK 228 (541)
Q Consensus 156 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~ 228 (541)
.+++|+.|++++|.+.. +|. +. ++|+.|++++|.++..+. +.. +| +.|++++|.+. .+|..+
T Consensus 158 ---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l 226 (571)
T 3cvr_A 158 ---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENI 226 (571)
T ss_dssp ---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCC-CCCGGG
T ss_pred ---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcce-ecCHHH
Confidence 35667777777776663 444 44 667777777666664333 322 44 77777777666 455555
Q ss_pred CCCCCccEEeccCCcccCcCC
Q 036588 229 FKMPLLQFLDLSSNRLSAELP 249 (541)
Q Consensus 229 ~~~~~L~~L~l~~~~~~~~~~ 249 (541)
..+++|+.|++++|.+.+..+
T Consensus 227 ~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 227 LSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp GGSCTTEEEECCSSSCCHHHH
T ss_pred hcCCCCCEEEeeCCcCCCcCH
Confidence 556777777777776654333
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.9e-16 Score=137.72 Aligned_cols=100 Identities=23% Similarity=0.317 Sum_probs=50.0
Q ss_pred CeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeec
Q 036588 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFL 101 (541)
Q Consensus 22 ~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 101 (541)
++++|+++++.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|.+ +.+|..++.++++|++|++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI-TELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC-CCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC-CccCHhHccCCCCCCEEEC
Confidence 455555555555544444555555555555555555544455555555555555555554 2444444333555555555
Q ss_pred cccccCccCCccCCCCCCCcE
Q 036588 102 KSNMFHGKIPSTLSSCKRLRE 122 (541)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~L~~ 122 (541)
++|++....+..|..+++|++
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~ 132 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNL 132 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCCEeCHHHcCCCCCCCE
Confidence 555554444444444444444
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.7e-16 Score=145.19 Aligned_cols=171 Identities=26% Similarity=0.289 Sum_probs=100.2
Q ss_pred ccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCcc
Q 036588 301 ISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLE 380 (541)
Q Consensus 301 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 380 (541)
...+++|+.|++++|.+... ..+..+++|++|++++|.+....+ +..+++|+.|++++|.+++ ++. +..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSS--LKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGG--GTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccC-hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Chh--hccCCCCC
Confidence 34567778888877776543 346667777777777776664332 5566677777777766642 221 44566666
Q ss_pred EEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcC
Q 036588 381 ELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQL 460 (541)
Q Consensus 381 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 460 (541)
.|++++|.+.+. ..+..+++|++|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcC
Confidence 666666665432 3455566666666666665543 345556666666666665554333 45555556666655555
Q ss_pred CCCCCccccCCCCccEeeCCCCcc
Q 036588 461 SGSLPSFKFKMPLLQFLDLSSNRL 484 (541)
Q Consensus 461 ~~~~~~~~~~~~~L~~L~l~~~~~ 484 (541)
.+ ++ .+..+++|+.|++++|++
T Consensus 191 ~~-l~-~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 191 SD-LR-ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CB-CG-GGTTCTTCSEEEEEEEEE
T ss_pred CC-Ch-hhccCCCCCEEECcCCcc
Confidence 43 22 245555555555555555
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-16 Score=144.85 Aligned_cols=175 Identities=25% Similarity=0.277 Sum_probs=143.3
Q ss_pred cccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCcc
Q 036588 323 YVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSY 402 (541)
Q Consensus 323 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 402 (541)
....+++|+.|++++|.+... ..+..+++|+.|++++|.+++ ++. +..+++|+.|++++|.+.+ ...+..+++
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~--~~~l~~l~~ 113 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTD-IKP--LANLKNLGWLFLDENKVKD--LSSLKDLKK 113 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCC--GGGGTTCTT
T ss_pred chhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCC-Ccc--cccCCCCCEEECCCCcCCC--ChhhccCCC
Confidence 356788999999999988744 236778999999999999873 333 6689999999999998864 234888999
Q ss_pred CCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCC
Q 036588 403 LRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSN 482 (541)
Q Consensus 403 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 482 (541)
|++|++++|.+... ..+..+++|+.|++++|++... +.+..+++|+.|++++|.+.+..+ +..+++|+.|++++|
T Consensus 114 L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 114 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence 99999999988764 4688899999999999998755 567888999999999998885444 788999999999999
Q ss_pred ccccccCcccccCCcccceeeeccceeccc
Q 036588 483 RLSTELPTNVFHNLPFLEELYLSNNMFYGE 512 (541)
Q Consensus 483 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 512 (541)
.+.+ ++ .+..+++|+.|++++|++.+.
T Consensus 189 ~i~~-l~--~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 189 HISD-LR--ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CCCB-CG--GGTTCTTCSEEEEEEEEEECC
T ss_pred cCCC-Ch--hhccCCCCCEEECcCCcccCC
Confidence 8844 54 378889999999999998854
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.7e-16 Score=156.32 Aligned_cols=187 Identities=28% Similarity=0.296 Sum_probs=109.2
Q ss_pred CccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEcc
Q 036588 306 KLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLS 385 (541)
Q Consensus 306 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 385 (541)
+++.|++++|.+......+ .++|++|++++|.+. .++ ..+++|+.|++++|.+++ ++. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~--l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE--LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC--CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch--hhc--CCCEEECC
Confidence 7778888777766533323 366777777777766 333 345677777777777653 444 222 67777777
Q ss_pred CcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCC
Q 036588 386 NNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLP 465 (541)
Q Consensus 386 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 465 (541)
+|.+.+ ++. .+++|+.|++++|.++.. +. .+++|+.|++++|++..... +. ++|+.|++++|.+. .+|
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~lp 196 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTML-PE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-SLP 196 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCcC-CC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-chh
Confidence 776653 333 466677777777766642 22 35666677777666654333 32 66666666666666 334
Q ss_pred ccccCCCCc-------cEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCc
Q 036588 466 SFKFKMPLL-------QFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNC 520 (541)
Q Consensus 466 ~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 520 (541)
. +.. +| +.|++++|.+ +.+|.. +..+++|+.|++++|++.+.+|..+..+
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l-~~lp~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRI-THIPEN-ILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp C-CC----------CCEEEECCSSCC-CCCCGG-GGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred h-HHH--hhhcccccceEEecCCCcc-eecCHH-HhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 3 332 45 6666666666 335533 3336666666666666665555554443
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.2e-15 Score=144.76 Aligned_cols=308 Identities=13% Similarity=0.019 Sum_probs=141.1
Q ss_pred cCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCC
Q 036588 152 EIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKM 231 (541)
Q Consensus 152 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 231 (541)
+...+|.+|++|+.+++..+ +......++..+..|+.+.+..+-..-....+..+..++....... ......++..+
T Consensus 85 I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~~--~~i~~~aF~~c 161 (394)
T 4fs7_A 85 IGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPEGV--TVIGDEAFATC 161 (394)
T ss_dssp ECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCTTC--CEECTTTTTTC
T ss_pred cchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccCccc--cccchhhhccc
Confidence 33445666666666666543 3333344555555665555443311111111222222211111111 11122334445
Q ss_pred CCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEE
Q 036588 232 PLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLD 311 (541)
Q Consensus 232 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 311 (541)
++|+.+.+..+. ..+....|.++.+|+.+.+..+ +......+|..++.|+.+.+..+... ..........|+.+.
T Consensus 162 ~~L~~i~l~~~~--~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ 236 (394)
T 4fs7_A 162 ESLEYVSLPDSM--ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNII 236 (394)
T ss_dssp TTCCEEECCTTC--CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEE
T ss_pred CCCcEEecCCcc--ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEE
Confidence 555555554332 1233444555555555555432 22233444444555544444332211 111112223444444
Q ss_pred eeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCccccc
Q 036588 312 LQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYG 391 (541)
Q Consensus 312 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 391 (541)
+.... .......+..+..++.+.+..+.. .+....|..++.++.+......+
T Consensus 237 ip~~~------------------------~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i-- 288 (394)
T 4fs7_A 237 IPDSF------------------------TELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIV-- 288 (394)
T ss_dssp ECTTC------------------------CEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEE--
T ss_pred ECCCc------------------------eecccccccccccceeEEcCCCcc--eeeccccccccccceeccCceee--
Confidence 43221 112233444555555555544332 23444455555555555544332
Q ss_pred CCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCCCCCccccC
Q 036588 392 EIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFK 470 (541)
Q Consensus 392 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~ 470 (541)
....|..+.+|+.+.+..+ +..+...+|..|.+|+.+.+... +...... +..+.+|+.+++..+ +..+...+|.+
T Consensus 289 -~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~ 364 (394)
T 4fs7_A 289 -PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG 364 (394)
T ss_dssp -CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTT
T ss_pred -ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhC
Confidence 2234556666666666543 33344556666666666666432 2222222 455666666666554 44355567777
Q ss_pred CCCccEeeCCCCccccccCcccccCCccccee
Q 036588 471 MPLLQFLDLSSNRLSTELPTNVFHNLPFLEEL 502 (541)
Q Consensus 471 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 502 (541)
|++|+.+.+..+- ..+. ..|.+|++|+.+
T Consensus 365 C~~L~~i~lp~~~--~~~~-~~F~~c~~L~~I 393 (394)
T 4fs7_A 365 CINLKKVELPKRL--EQYR-YDFEDTTKFKWI 393 (394)
T ss_dssp CTTCCEEEEEGGG--GGGG-GGBCTTCEEEEE
T ss_pred CCCCCEEEECCCC--EEhh-heecCCCCCcEE
Confidence 7777777775432 2232 456777777664
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.2e-17 Score=152.74 Aligned_cols=103 Identities=18% Similarity=0.138 Sum_probs=48.9
Q ss_pred CCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEec
Q 036588 376 LPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDL 455 (541)
Q Consensus 376 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 455 (541)
+++|+.+++++|.+.......|.+|++|+++++.++ +..+...+|..|++|+ ..+++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~----------------------~~l~l 281 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLA----------------------GTLEL 281 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC----------------------EEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhcc----------------------EEEEE
Confidence 444444444444444333344444444444444443 3333344444444444 04444
Q ss_pred cCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceee
Q 036588 456 SDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELY 503 (541)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 503 (541)
.. .+..+.+.+|.+|++|+.+++.++.+ ..++...|.++++|+.++
T Consensus 282 ~~-~l~~I~~~aF~~c~~L~~l~l~~n~i-~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 282 PA-SVTAIEFGAFMGCDNLRYVLATGDKI-TTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CT-TCCEECTTTTTTCTTEEEEEECSSCC-CEECTTTTCTTCCCCEEE
T ss_pred cc-cceEEchhhhhCCccCCEEEeCCCcc-CccchhhhcCCcchhhhc
Confidence 43 33334444555555666666555555 334445555566665554
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.8e-16 Score=135.47 Aligned_cols=152 Identities=18% Similarity=0.198 Sum_probs=71.9
Q ss_pred hhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEec
Q 036588 66 FNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLS 145 (541)
Q Consensus 66 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~ 145 (541)
..+++|++|++++|.+. .+| .+.. +++|++|++++|.++ .+..+..+++|++ |+++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~-l~~L~~L~l~~n~~~--~~~~l~~l~~L~~-------------------L~l~ 96 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEY-AHNIKDLTINNIHAT--NYNPISGLSNLER-------------------LRIM 96 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGG-CTTCSEEEEESCCCS--CCGGGTTCTTCCE-------------------EEEE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhc-CCCCCEEEccCCCCC--cchhhhcCCCCCE-------------------EEeE
Confidence 44445555555555542 333 3333 555555555555333 1123334444444 3333
Q ss_pred CccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCce-eeeeccCCCCcCCCCEEECCCCcccCCC
Q 036588 146 KNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNK-LQGTIPYAGHLYQLQWLDLSDNQLSGSL 224 (541)
Q Consensus 146 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 224 (541)
+|.+.+..+..+..+++|+.|++++|.+.+..+..++.+++|++|++++|. +.+. +.+..+++|+.|++++|.+.. .
T Consensus 97 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~~l~~l~~L~~L~l~~n~i~~-~ 174 (197)
T 4ezg_A 97 GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD-Y 174 (197)
T ss_dssp CTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-GGGGGCSSCCEEECTTBCCCC-C
T ss_pred CCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-HhhcCCCCCCEEECCCCCCcC-h
Confidence 344443334445555555555555555554444455555555555555554 3322 244555555555555555542 2
Q ss_pred CcccCCCCCccEEeccCCcc
Q 036588 225 PSFKFKMPLLQFLDLSSNRL 244 (541)
Q Consensus 225 ~~~~~~~~~L~~L~l~~~~~ 244 (541)
+ .+..+++|++|++++|.+
T Consensus 175 ~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 175 R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp T-TGGGCSSCCEEEECBC--
T ss_pred H-HhccCCCCCEEEeeCccc
Confidence 2 344556666666666554
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.5e-16 Score=135.63 Aligned_cols=153 Identities=20% Similarity=0.223 Sum_probs=114.1
Q ss_pred CCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccc-cCCCcccCCcceE
Q 036588 375 NLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGT-IPYAGHLFQLQWL 453 (541)
Q Consensus 375 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L 453 (541)
.+++|+.|++++|.+. .++ .+..+++|++|++++|.+.. +..+..+++|++|++++|.+... ...+..+++|+.|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 5667777777777775 333 56777788888888886543 34677788888888888887753 3447778888888
Q ss_pred eccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeecccc
Q 036588 454 DLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNF 533 (541)
Q Consensus 454 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 533 (541)
++++|.+.+..+..+..+++|++|++++|...+.++ .+..+++|+.|++++|++.+. + .+..+++|+.|++++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence 888888876667778888899999999988335564 477888999999999988853 3 788889999999999887
Q ss_pred cc
Q 036588 534 SG 535 (541)
Q Consensus 534 ~~ 535 (541)
.+
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 54
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.7e-16 Score=146.72 Aligned_cols=285 Identities=13% Similarity=0.061 Sum_probs=134.4
Q ss_pred CCccEEEeccCcccccCCccccc-cCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCC--------C
Q 036588 161 SYLRILVLQFNNFSGAIPKEISN-LTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFK--------M 231 (541)
Q Consensus 161 ~~L~~L~l~~~~i~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--------~ 231 (541)
++++.|.+++. +.......+.. +++|+.|+++++.+.......+.++.++.+....+.+ ....+.. +
T Consensus 25 ~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~ 100 (329)
T 3sb4_A 25 NSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFV---PAYAFSNVVNGVTKGK 100 (329)
T ss_dssp HHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEE---CTTTTEEEETTEEEEC
T ss_pred CceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccccc---CHHHhccccccccccc
Confidence 45555555543 11111122223 4566666666666552111112222233333333321 2233444 6
Q ss_pred CCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccc----cCCCccccccccCCc
Q 036588 232 PLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNN----FSGAIPKEISNLTKL 307 (541)
Q Consensus 232 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~~~~~~~~l~~l~~L 307 (541)
++|+.+.+.. .+ ..++...|.+|++|+.+++..+.+....+.+|..+.++..+...... ........+..+..|
T Consensus 101 ~~L~~l~L~~-~i-~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 101 QTLEKVILSE-KI-KNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp TTCCC-CBCT-TC-CEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred CCCcEEECCc-cc-cchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 7777777766 44 35566667777777777777766666666667666666655544321 111122234445555
Q ss_pred c-EEEeeCCcccccc--ccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEc
Q 036588 308 E-KLDLQYNRLQGTI--LYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYL 384 (541)
Q Consensus 308 ~-~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 384 (541)
+ .+.+......... .......++..+.+.+.-...........+++|+.+++++|.++ .++...|.++++|+.+++
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEEC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEEC
Confidence 5 3333322111000 00112233333333332111000011112455566666555554 555555555666666666
Q ss_pred cCcccccCCCcCCcCCccCC-eEEcccCCCCCccchhhhccCCCcEEEccccccccccCC-CcccCCcceEe
Q 036588 385 SNNMFYGEIPSDTQNCSYLR-ILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLD 454 (541)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~ 454 (541)
.++ +.......|.+|++|+ .+++.. .+..+...+|..|++|+.+++.++.+...... +..+++|+.++
T Consensus 258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred Ccc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 554 3334444556666666 666655 44445555666666666666655555544333 45555665554
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-15 Score=133.81 Aligned_cols=152 Identities=22% Similarity=0.239 Sum_probs=109.6
Q ss_pred EEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccc
Q 036588 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKS 103 (541)
Q Consensus 24 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 103 (541)
+.++.++++++ .+|..+. ++++.|++++|.++...+..|..+++|++|++++|.+.+..|..+.. +++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~-l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG-LRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT-CSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC-CcCCCEEECCC
Confidence 35666777777 4565554 68899999999888556667888888899988888885444555555 88888888888
Q ss_pred cccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccc
Q 036588 104 NMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISN 183 (541)
Q Consensus 104 ~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~ 183 (541)
|.++...+..|..+++|++ |++++|.+....+..|..+++|+.|++++|.+....+..+..
T Consensus 90 N~l~~l~~~~f~~l~~L~~-------------------L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 150 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQL-------------------LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCE-------------------EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred CcCCccCHhHccCCCCCCE-------------------EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhC
Confidence 8888655556677777766 555556666666667777777777777777777555556677
Q ss_pred cCCCcEEEccCceee
Q 036588 184 LTKLEKLDLQYNKLQ 198 (541)
Q Consensus 184 l~~L~~L~l~~~~~~ 198 (541)
+++|+.|++++|.+.
T Consensus 151 l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 151 LRAIQTMHLAQNPFI 165 (220)
T ss_dssp CTTCCEEECCSSCEE
T ss_pred CCCCCEEEeCCCCcC
Confidence 777777777776654
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.7e-15 Score=151.86 Aligned_cols=171 Identities=25% Similarity=0.287 Sum_probs=97.1
Q ss_pred ccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCcc
Q 036588 301 ISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLE 380 (541)
Q Consensus 301 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 380 (541)
+..+++|+.|++++|.+... +.+..+++|+.|++++|.+....+ +..+++|+.|++++|.+. .++ .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~--~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS--SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC-TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT--TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCC-hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh--hhccCCCCC
Confidence 34567777777777766533 346666677777777666654332 555666666666666654 222 244556666
Q ss_pred EEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcC
Q 036588 381 ELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQL 460 (541)
Q Consensus 381 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 460 (541)
.|++++|.+.+. ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCC
Confidence 666666655421 3355556666666666655543 345555666666666665554433 45555566666665555
Q ss_pred CCCCCccccCCCCccEeeCCCCcc
Q 036588 461 SGSLPSFKFKMPLLQFLDLSSNRL 484 (541)
Q Consensus 461 ~~~~~~~~~~~~~L~~L~l~~~~~ 484 (541)
.+. ..+..+++|+.|++++|++
T Consensus 188 ~~l--~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 188 SDL--RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp CBC--GGGTTCTTCSEEECCSEEE
T ss_pred CCC--hHHccCCCCCEEEccCCcC
Confidence 432 2345555566666655555
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-15 Score=154.90 Aligned_cols=169 Identities=25% Similarity=0.313 Sum_probs=80.5
Q ss_pred ccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCC
Q 036588 41 LGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRL 120 (541)
Q Consensus 41 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 120 (541)
+..+++|+.|+++++.+. .++ .+..+++|++|+|++|.+. .++. +.. +++|+.|++++|.+.. + ..+..+++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~-~~~~-l~~-l~~L~~L~Ls~N~l~~-l-~~l~~l~~L 111 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLT-DIKP-LTN-LKNLGWLFLDENKIKD-L-SSLKDLKKL 111 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCC-CCGG-GGG-CTTCCEEECCSSCCCC-C-TTSTTCTTC
T ss_pred hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCC-CChh-hcc-CCCCCEEECcCCCCCC-C-hhhccCCCC
Confidence 345566666666666655 333 3566666666666666653 2322 333 6666666666666553 2 245555555
Q ss_pred cEEecCCCccc---cccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCcee
Q 036588 121 RETSLSLNDFF---WDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKL 197 (541)
Q Consensus 121 ~~l~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~ 197 (541)
++|++++|.+. .+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 112 ~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 112 KSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp CEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCCCCCccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 55444444332 111223333344444444332 234444455555555444442222 44444445555444444
Q ss_pred eeeccCCCCcCCCCEEECCCCccc
Q 036588 198 QGTIPYAGHLYQLQWLDLSDNQLS 221 (541)
Q Consensus 198 ~~~~~~~~~~~~L~~L~l~~~~~~ 221 (541)
.+. +.+..+++|+.|++++|.+.
T Consensus 188 ~~l-~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 188 SDL-RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CBC-GGGTTCTTCSEEECCSEEEE
T ss_pred CCC-hHHccCCCCCEEEccCCcCc
Confidence 432 23444444444444444443
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.8e-15 Score=131.66 Aligned_cols=151 Identities=26% Similarity=0.286 Sum_probs=98.9
Q ss_pred eEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccc
Q 036588 355 QFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQY 434 (541)
Q Consensus 355 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 434 (541)
+.++.+++.++ .++... .++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..|..+++|+.|++++
T Consensus 22 ~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 45666666654 455432 36677777777777665566677777777777777777665556667777777777777
Q ss_pred cccccccCC-CcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecc
Q 036588 435 NRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYG 511 (541)
Q Consensus 435 ~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 511 (541)
|++....+. +..+++|+.|++++|.+. .+|..+..+++|++|++++|.+. .++...+..+++|+.|++.+|++.+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCCccC
Confidence 776654443 456677777777777666 45555666777777777777663 3444556666777777777776663
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.7e-15 Score=131.41 Aligned_cols=150 Identities=22% Similarity=0.246 Sum_probs=75.3
Q ss_pred EEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCC-cCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccc
Q 036588 356 FLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIP-SDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQY 434 (541)
Q Consensus 356 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 434 (541)
.++++++.++ .++... .+.+++|++++|.+....+ ..|..+++|++|++++|.+....+..|..+++|++|++++
T Consensus 15 ~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 5556665554 344322 2334556666655543322 2345555555555555555544444555555555555555
Q ss_pred cccccccCC-CcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceec
Q 036588 435 NRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 435 ~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 510 (541)
|.+....+. +..+++|++|++++|.+....+..+..+++|++|++++|.+.+ ++...+..+++|+.|++++|++.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT-VAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC-BCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCE-ECHHHhcCCCCCCEEEecCcCCc
Confidence 555443332 4445555555555555554444445555555555555555533 22234444555555555555544
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.9e-16 Score=147.43 Aligned_cols=175 Identities=34% Similarity=0.303 Sum_probs=119.0
Q ss_pred cEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhc-CCCCccEEEccCcccccCCCcCCcCCccCCeEEcc
Q 036588 331 QWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFH-NLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLK 409 (541)
Q Consensus 331 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 409 (541)
+.++++++.+.. ++..+ .+.++.|++++|.++ .++...+. .+++|+.|++++|.+....+..|..+++|++|+++
T Consensus 21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 467777776663 33222 245777888888776 45555555 77788888888887776666667777888888888
Q ss_pred cCCCCCccchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCCCCCccc---cCCCCccEeeCCCCccc
Q 036588 410 FNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFK---FKMPLLQFLDLSSNRLS 485 (541)
Q Consensus 410 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~ 485 (541)
+|.+....+..|..+++|+.|++++|++....+. +..+++|+.|++++|.+....+..+ ..+++|+.|++++|.+.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 8877766666777778888888888777655443 6667777777777777774433344 45777777777777773
Q ss_pred cccCcccccCCcc--cceeeeccceec
Q 036588 486 TELPTNVFHNLPF--LEELYLSNNMFY 510 (541)
Q Consensus 486 ~~~~~~~~~~~~~--L~~L~l~~~~~~ 510 (541)
.++...+..++. ++.|++.+|++.
T Consensus 177 -~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 -KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp -CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred -ccCHHHhhhccHhhcceEEecCCCcc
Confidence 455555666665 367777777776
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=138.27 Aligned_cols=165 Identities=20% Similarity=0.198 Sum_probs=76.6
Q ss_pred CcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcc
Q 036588 330 LQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLK 409 (541)
Q Consensus 330 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 409 (541)
+..+++.++.+.+.. .+..+++|+.|++++|.++ .++ .+..+++|+.|++++|++.+..+ +..+++|++|+++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 334444444443221 2334555555555555554 222 23345555555555555542221 4555555555555
Q ss_pred cCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccC
Q 036588 410 FNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELP 489 (541)
Q Consensus 410 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 489 (541)
+|++..... +.. ++|+.|++++|.+... +.+..+++|+.|++++|.+.+. + .+..+++|++|++++|.+.+.
T Consensus 94 ~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 94 RNRLKNLNG--IPS-ACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp SSCCSCCTT--CCC-SSCCEEECCSSCCSBS-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--
T ss_pred CCccCCcCc--ccc-CcccEEEccCCccCCC-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--
Confidence 555543211 111 5555555555554432 2344455555555555554432 1 344455555555555555332
Q ss_pred cccccCCcccceeeeccceec
Q 036588 490 TNVFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 490 ~~~~~~~~~L~~L~l~~~~~~ 510 (541)
..+..+++|+.|++++|++.
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEE
T ss_pred -HHhccCCCCCEEeCCCCccc
Confidence 23444555555555555554
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-14 Score=137.00 Aligned_cols=263 Identities=11% Similarity=0.068 Sum_probs=141.2
Q ss_pred CCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEE
Q 036588 231 MPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKL 310 (541)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 310 (541)
+..++.+.+...- ..++...|.++ +|+.+.+..+ +......+|.++ +|+.+.+.. .+.......|..|++|+.+
T Consensus 112 ~~~l~~i~ip~~i--~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPNSV--KSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCTTC--CEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECCcc--CEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 3555555555432 23445555554 5666666543 444555555553 466666654 3333333445555666666
Q ss_pred EeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccc
Q 036588 311 DLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFY 390 (541)
Q Consensus 311 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 390 (541)
++..+.+...... .|. +.+|+.+.+..+ ++ .+....|.++++|+.+.+..+ +.
T Consensus 186 ~l~~n~l~~I~~~-----------------------aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~ 238 (401)
T 4fdw_A 186 DLSKTKITKLPAS-----------------------TFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VS 238 (401)
T ss_dssp ECTTSCCSEECTT-----------------------TTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CC
T ss_pred ecCCCcceEechh-----------------------hEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-cc
Confidence 6655544433322 222 344444444432 22 344444555555555555442 22
Q ss_pred cCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccc-----cccC-CCcccCCcceEeccCCcCCCCC
Q 036588 391 GEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQ-----GTIP-YAGHLFQLQWLDLSDNQLSGSL 464 (541)
Q Consensus 391 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~~~-~~~~~~~L~~L~l~~~~~~~~~ 464 (541)
.....+|.+ .+|+.+.+. +.+..+...+|..|++|+.+.+.++... .... .+..+++|+.+.+.. .+..+.
T Consensus 239 ~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~ 315 (401)
T 4fdw_A 239 TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILG 315 (401)
T ss_dssp EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEEC
T ss_pred Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEh
Confidence 223334444 455555552 2333344555555666666665554432 1111 255666667666663 344455
Q ss_pred CccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCcc-ccceEEeeccc
Q 036588 465 PSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCS-YLRILVVQFNN 532 (541)
Q Consensus 465 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~ 532 (541)
..+|.+|++|+.+.+..+ + ..+....|.+| +|+.+++.++.........|..++ .++.|++..+.
T Consensus 316 ~~aF~~c~~L~~l~lp~~-l-~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 316 QGLLGGNRKVTQLTIPAN-V-TQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp TTTTTTCCSCCEEEECTT-C-CEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred hhhhcCCCCccEEEECcc-c-cEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 566777778888877544 3 44666677777 788888887777756666777774 67777777653
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3e-17 Score=165.20 Aligned_cols=205 Identities=20% Similarity=0.169 Sum_probs=131.4
Q ss_pred ccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCc-------------cCCCCChhhhhhcCCCcEee-cccccc
Q 036588 41 LGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNA-------------LFGELPPNFCNHLSNLESLF-LKSNMF 106 (541)
Q Consensus 41 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~~l~~L~~L~-l~~~~~ 106 (541)
+..+++|+.|++++|.++ .+|..++++++|+.|++.++. ..+..|..+.. +++|+.|+ ++.+.+
T Consensus 345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~-l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 345 SATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY-FSTLKAVDPMRAAYL 422 (567)
T ss_dssp CSTTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHH-HHHHHHHCGGGHHHH
T ss_pred cccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHH-HHhcccCcchhhccc
Confidence 367899999999999998 899999999999999987664 22333333333 67777666 444432
Q ss_pred CccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCC
Q 036588 107 HGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTK 186 (541)
Q Consensus 107 ~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~ 186 (541)
. +|..+.+..+.+.... ...|+.|++++|.+.+ +|. +..+++|+.|++++|.+. .+|..++.+++
T Consensus 423 ~-----------~L~~l~l~~n~i~~l~-~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 487 (567)
T 1dce_A 423 D-----------DLRSKFLLENSVLKME-YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRC 487 (567)
T ss_dssp H-----------HHHHHHHHHHHHHHHH-HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTT
T ss_pred c-----------hhhhhhhhcccccccC-ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCC
Confidence 2 2222222222222111 1246667777777765 344 777777777777777777 66777777777
Q ss_pred CcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCC-CcccCCCCCccEEeccCCcccCcCC--hhhhccCCCCcEEE
Q 036588 187 LEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSL-PSFKFKMPLLQFLDLSSNRLSAELP--TNVFHNLPFLEELY 263 (541)
Q Consensus 187 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~ 263 (541)
|+.|++++|.+++. +.+..+++|+.|++++|.+.+.. |..+..+++|+.|++++|.+.+..+ ..++..+++|+.|+
T Consensus 488 L~~L~Ls~N~l~~l-p~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 488 LEVLQASDNALENV-DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCEEECCSSCCCCC-GGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCEEECCCCCCCCC-cccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 77777777777654 36667777777777777776554 6666667777777777776643322 12334455555553
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.9e-15 Score=128.96 Aligned_cols=156 Identities=24% Similarity=0.240 Sum_probs=125.4
Q ss_pred cEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEccc
Q 036588 331 QWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKF 410 (541)
Q Consensus 331 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 410 (541)
+.++++++.+.. ++..+ .+.++.|++++|.++...+...+..+++|+.|++++|.+.+..+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 466666666653 23222 345678888888887444556677889999999999988866667889999999999999
Q ss_pred CCCCCccchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccC
Q 036588 411 NNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELP 489 (541)
Q Consensus 411 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 489 (541)
|.+....+..|..+++|++|++++|++....+. +..+++|+.|++++|.+....+..+..+++|++|++++|++....+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 999888888899999999999999998876554 7788999999999999987778889999999999999999865443
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-15 Score=143.56 Aligned_cols=174 Identities=27% Similarity=0.176 Sum_probs=97.3
Q ss_pred EEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhh-hcCCCcEEEeecCccCCCCChhhhhhcCCCcEeecc
Q 036588 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIF-NMSSLLSINFINNALFGELPPNFCNHLSNLESLFLK 102 (541)
Q Consensus 24 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 102 (541)
++++.++++++ .+|..+. +.++.|+|++|.+++..+..+. ++++|++|++++|.+. .++...+.++++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECC
Confidence 35666666666 3454443 3467777777777644455555 6777777777777763 3333333337777777777
Q ss_pred ccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccc-
Q 036588 103 SNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEI- 181 (541)
Q Consensus 103 ~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l- 181 (541)
+|+++...+..|..+++|++|++ ++|.+....+..|..+++|+.|++++|.+....+..+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L-------------------~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 157 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLL-------------------YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEEC-------------------CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC
T ss_pred CCcCCcCCHHHhCCCcCCCEEEC-------------------CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhc
Confidence 77777655566666666666433 3444444444455555666666666655553222222
Q ss_pred --cccCCCcEEEccCceeeeeccC-CCCcCC--CCEEECCCCcc
Q 036588 182 --SNLTKLEKLDLQYNKLQGTIPY-AGHLYQ--LQWLDLSDNQL 220 (541)
Q Consensus 182 --~~l~~L~~L~l~~~~~~~~~~~-~~~~~~--L~~L~l~~~~~ 220 (541)
..+++|+.|++++|.+...... +..++. ++.|++++|.+
T Consensus 158 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp ----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred CcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 3455666666666655543321 333333 35566666554
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.7e-14 Score=135.61 Aligned_cols=215 Identities=13% Similarity=0.071 Sum_probs=137.1
Q ss_pred CcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccE
Q 036588 206 HLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRI 285 (541)
Q Consensus 206 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 285 (541)
.+..++.+.+.. .++.....++..+ +|+.+.+..+ + ..+....|.++ +|+.+.+.. .+......+|.+|++|+.
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i-~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-L-KSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-C-CEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-c-cEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 346788888865 3443445556654 7999999876 3 46777788885 799999986 566678899999999999
Q ss_pred EEecccccCCCccccccccCCccEEEeeCCcccccc-ccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcC
Q 036588 286 LVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTI-LYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRL 364 (541)
Q Consensus 286 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 364 (541)
+++.++.+.......+. +.+|+.+.+..+ +.... ..|..+++|+.+.+..+ +..+....|.+ .+|+.+.+.++ +
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~-i 259 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG-V 259 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT-C
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC-c
Confidence 99999887755555554 689999998754 33222 23667777777777653 33334444444 56666666432 3
Q ss_pred cCcCChhhhcCCCCccEEEccCcccc-----cCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEcc
Q 036588 365 SVELPTNVFHNLPFLEELYLSNNMFY-----GEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQ 433 (541)
Q Consensus 365 ~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 433 (541)
+ .+....|.+|++|+.+.+.++... ......|.+|++|+.+.+.. .+..+...+|..|.+|+.+.+.
T Consensus 260 ~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 260 T-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp C-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEEC
T ss_pred c-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEEC
Confidence 2 455556666666666666655432 12334555566666665552 2444444555555555555553
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.3e-15 Score=134.23 Aligned_cols=166 Identities=23% Similarity=0.293 Sum_probs=75.3
Q ss_pred CCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcE
Q 036588 43 NLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRE 122 (541)
Q Consensus 43 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 122 (541)
.+.++..++++++.++ .++ .+..+++|++|++++|.+ +.++ .+.. +++|++|++++|.+++..+ +.++++|++
T Consensus 17 ~l~~l~~l~l~~~~i~-~~~-~~~~l~~L~~L~l~~n~i-~~l~-~l~~-l~~L~~L~L~~N~i~~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVT-DLV-SQKELSGVQNFNGDNSNI-QSLA-GMQF-FTNLKELHLSHNQISDLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTT-SEE-CHHHHTTCSEEECTTSCC-CCCT-TGGG-CTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCcc-ccc-chhhcCcCcEEECcCCCc-ccch-HHhh-CCCCCEEECCCCccCCChh--hccCCCCCE
Confidence 3444555555555555 333 455566666666666655 2333 3333 6666666666666553332 555555555
Q ss_pred EecCCCccccccc--cCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeee
Q 036588 123 TSLSLNDFFWDHT--KRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGT 200 (541)
Q Consensus 123 l~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ 200 (541)
|+++++.+..... .++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+.
T Consensus 90 L~L~~N~l~~l~~~~~~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 90 LSVNRNRLKNLNGIPSACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp EECCSSCCSCCTTCCCSSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC
T ss_pred EECCCCccCCcCccccCcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch
Confidence 4444333211000 02333344444444332 1344444455555544444422 1344444444444444444433
Q ss_pred ccCCCCcCCCCEEECCCCcc
Q 036588 201 IPYAGHLYQLQWLDLSDNQL 220 (541)
Q Consensus 201 ~~~~~~~~~L~~L~l~~~~~ 220 (541)
..+..+++|+.|++++|.+
T Consensus 166 -~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEE
T ss_pred -HHhccCCCCCEEeCCCCcc
Confidence 3333344444444444433
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.55 E-value=7.8e-15 Score=123.68 Aligned_cols=136 Identities=27% Similarity=0.227 Sum_probs=75.8
Q ss_pred ccCCeEEcccCCCC-CccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeC
Q 036588 401 SYLRILVLKFNNFP-GAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDL 479 (541)
Q Consensus 401 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 479 (541)
++|++|++++|.+. ...+..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+....+..+..+++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 44555555555443 22333344555555555555554433 44455556666666666655445555555666666666
Q ss_pred CCCccccccCc-ccccCCcccceeeeccceecccCC---CCCCCccccceEEeecccccccCCC
Q 036588 480 SSNRLSTELPT-NVFHNLPFLEELYLSNNMFYGEIP---SDTPNCSYLRILVVQFNNFSGAIPK 539 (541)
Q Consensus 480 ~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~p~ 539 (541)
++|.+.+ ++. ..+..+++|+.|++++|++.+..+ ..+..+++|+.|++++|.+. .+|+
T Consensus 103 s~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 103 SGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp BSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred cCCccCc-chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 6666633 321 345566667777777776663322 25666677777777777664 4444
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-14 Score=120.73 Aligned_cols=133 Identities=18% Similarity=0.076 Sum_probs=94.0
Q ss_pred CCCeEEEEecCCcce-eeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcE
Q 036588 20 TYRVTALNISGLNLT-VTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLES 98 (541)
Q Consensus 20 ~~~l~~L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 98 (541)
.+++++|+++++.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+.. +++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK-LPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH-CTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh-CCCCCE
Confidence 467899999999887 66788888899999999999888744 77888889999999988885555555444 888888
Q ss_pred eeccccccCccC-CccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCC---ccccCCCCccEEEeccCccc
Q 036588 99 LFLKSNMFHGKI-PSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIP---SDIANCSYLRILVLQFNNFS 174 (541)
Q Consensus 99 L~l~~~~~~~~~-~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~i~ 174 (541)
|++++|.++... +..+..+++|++ |++++|.+.+..+ ..+..+++|+.|++.+|.+.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~-------------------L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKS-------------------LDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCE-------------------EECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCE-------------------EEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 888888877432 145566666655 4444444443332 25566666666666666554
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.4e-12 Score=123.39 Aligned_cols=159 Identities=10% Similarity=0.105 Sum_probs=80.6
Q ss_pred ceeeeCCcccCCC-CCcEecccccccCCccchhhhhcCCCcEEEeecCc--cCCCCChhhhhhcCCCcEeeccccccCcc
Q 036588 33 LTVTIPSELGNLS-SLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNA--LFGELPPNFCNHLSNLESLFLKSNMFHGK 109 (541)
Q Consensus 33 i~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 109 (541)
++.+-..+|.+++ .|+.+.+... ++.....+|.++.+|+.+.+..+. -.+.+....+.+|.+|+.+.+..+ ++..
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 4444455666663 4777766543 443556667777777777766542 123444555555666666666533 3334
Q ss_pred CCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcE
Q 036588 110 IPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEK 189 (541)
Q Consensus 110 ~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~ 189 (541)
....|..+.+|+.+.+... ...+....|..+..|+.+.+..+ +......+|. ...|+.
T Consensus 129 ~~~aF~~c~~L~~i~lp~~--------------------~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~ 186 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG--------------------VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQ 186 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT--------------------CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSE
T ss_pred hhhhhhhhcccccccccce--------------------eeeecccceecccccccccccce-eeEecccccc-ccceeE
Confidence 4455566666666444321 12233345566666666666543 2222223333 245666
Q ss_pred EEccCceeeeeccCCCCcCCCCEEEC
Q 036588 190 LDLQYNKLQGTIPYAGHLYQLQWLDL 215 (541)
Q Consensus 190 L~l~~~~~~~~~~~~~~~~~L~~L~l 215 (541)
+.+...-..-....+..+..++....
T Consensus 187 i~ip~~~~~i~~~af~~c~~l~~~~~ 212 (394)
T 4gt6_A 187 IHIPAKVTRIGTNAFSECFALSTITS 212 (394)
T ss_dssp EEECTTCCEECTTTTTTCTTCCEEEE
T ss_pred EEECCcccccccchhhhccccceecc
Confidence 66554432222223444445554443
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.52 E-value=3e-12 Score=123.84 Aligned_cols=276 Identities=13% Similarity=0.125 Sum_probs=136.7
Q ss_pred cccCCccccCCCCccEEEeccCc---ccccCCccccccCCCcEEEccCceeeeec-cCCCCcCCCCEEECCCCcccCCCC
Q 036588 150 YGEIPSDIANCSYLRILVLQFNN---FSGAIPKEISNLTKLEKLDLQYNKLQGTI-PYAGHLYQLQWLDLSDNQLSGSLP 225 (541)
Q Consensus 150 ~~~~~~~~~~~~~L~~L~l~~~~---i~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~ 225 (541)
..+...+|.+|.+|+.+.+..+. +......+|..+..|+.+.+..+ +.... ..+..+.+|+.+.+... +.....
T Consensus 76 t~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~ 153 (394)
T 4gt6_A 76 TEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVAD 153 (394)
T ss_dssp CEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECT
T ss_pred eEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecc
Confidence 33445567777777777765542 34344456666667776666543 22222 23566667777766532 222334
Q ss_pred cccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCcccc-----
Q 036588 226 SFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKE----- 300 (541)
Q Consensus 226 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----- 300 (541)
..+..+..|+.+.+..+- ..+....|.. .+|+.+.+.... ......+|..+.+++................
T Consensus 154 ~~F~~c~~L~~i~~~~~~--~~I~~~aF~~-~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~ 229 (394)
T 4gt6_A 154 GMFSYCYSLHTVTLPDSV--TAIEERAFTG-TALTQIHIPAKV-TRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSA 229 (394)
T ss_dssp TTTTTCTTCCEEECCTTC--CEECTTTTTT-CCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECT
T ss_pred cceeccccccccccccee--eEeccccccc-cceeEEEECCcc-cccccchhhhccccceecccccccccccceeecccc
Confidence 455566677777665542 2344445543 457777665432 2345566666666766665543322111000
Q ss_pred --------ccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhh
Q 036588 301 --------ISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNV 372 (541)
Q Consensus 301 --------l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 372 (541)
......+..+.+...-..-....|..+..|+.+.+.+.... .....|.++++|+.+.+... ++ .++...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~-i~-~I~~~a 306 (394)
T 4gt6_A 230 NGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSR-IT-ELPESV 306 (394)
T ss_dssp TSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CC-EECTTT
T ss_pred cccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce-ecCcccccccccccccCCCc-cc-ccCcee
Confidence 11112233333322111111122455555555555443222 33445555566666555432 22 345555
Q ss_pred hcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccc
Q 036588 373 FHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNR 436 (541)
Q Consensus 373 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 436 (541)
|.+|.+|+.+.+..+ +......+|.+|++|+.+.+..+ +..+...+|..|.+|+.+.+.++.
T Consensus 307 F~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 307 FAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred ecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 555666666665543 22233445556666666665432 444445555566666666555543
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.48 E-value=3.2e-14 Score=117.19 Aligned_cols=100 Identities=16% Similarity=0.133 Sum_probs=73.2
Q ss_pred CCCeEEEEecCCcce-eeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcE
Q 036588 20 TYRVTALNISGLNLT-VTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLES 98 (541)
Q Consensus 20 ~~~l~~L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 98 (541)
.+++++|+++++.++ +.+|..+..+++|++|++++|.+++. ..+.++++|++|++++|.+.+.+|..+.. +++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK-CPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH-CTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh-CCCCCE
Confidence 457889999999888 67788888889999999998888744 67788888888888888885545554444 888888
Q ss_pred eeccccccCcc-CCccCCCCCCCcE
Q 036588 99 LFLKSNMFHGK-IPSTLSSCKRLRE 122 (541)
Q Consensus 99 L~l~~~~~~~~-~~~~~~~l~~L~~ 122 (541)
|++++|.+++. .+..+..+++|++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~ 117 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKS 117 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCE
T ss_pred EECCCCcCCChHHHHHHhhCCCCCE
Confidence 88888877642 1234444444444
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.2e-13 Score=117.27 Aligned_cols=127 Identities=26% Similarity=0.314 Sum_probs=69.2
Q ss_pred cEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccch-hhhccCCCcEEEccccccccccCC-CcccCCcceEeccC
Q 036588 380 EELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPK-EISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSD 457 (541)
Q Consensus 380 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~ 457 (541)
+.++++++.+. .++..+. +++++|++++|.+....+. .+..+++|+.|++++|.+.+..+. +..+++|+.|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45666666553 3333322 2666666666666544433 355666666666666665544332 45555566666666
Q ss_pred CcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceec
Q 036588 458 NQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 458 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 510 (541)
|.+....+..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCH-HHhhcCCCCCEEEeCCCCcc
Confidence 65555444455555556666666655544333 44555555566666555555
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.5e-14 Score=117.88 Aligned_cols=128 Identities=26% Similarity=0.198 Sum_probs=60.9
Q ss_pred ccCCeEEcccCCCC-CccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeC
Q 036588 401 SYLRILVLKFNNFP-GAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDL 479 (541)
Q Consensus 401 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 479 (541)
+++++|++++|.+. ...+..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+...++..+..+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 34444444444443 22333334444444444444444433 33444555555555555555434444444555555555
Q ss_pred CCCccccccCcccccCCcccceeeeccceecccCC---CCCCCccccceEEee
Q 036588 480 SSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIP---SDTPNCSYLRILVVQ 529 (541)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~ 529 (541)
++|.+.+......+..+++|+.|++++|++.+..+ ..+..+++|+.|+++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 55555331111334555556666666665553322 245555556555554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=9.6e-16 Score=154.23 Aligned_cols=194 Identities=21% Similarity=0.216 Sum_probs=143.0
Q ss_pred CCCeEEEEecCCcceeeeCCcccCCCCCcEecccccc-------------cCCccchhhhhcCCCcEEE-eecCccCCCC
Q 036588 20 TYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNW-------------FSGSIPASIFNMSSLLSIN-FINNALFGEL 85 (541)
Q Consensus 20 ~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~~~ 85 (541)
.++++.|+++++.++ .+|+.++++++|+.|+++++. ..+..|..+.++++|+.|+ ++.+.+ ..+
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-~~L 425 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-DDL 425 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-HHH
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-chh
Confidence 568889999999998 789999999999999997764 4556788889999999988 555432 111
Q ss_pred Ch------hhhh-hcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCcccc
Q 036588 86 PP------NFCN-HLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIA 158 (541)
Q Consensus 86 ~~------~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 158 (541)
+. .+.. ....|++|++++|.++. +|. ++.+++|++ |++++|.+. .+|..+.
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~-------------------L~Ls~N~l~-~lp~~~~ 483 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTH-------------------LDLSHNRLR-ALPPALA 483 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCE-------------------EECCSSCCC-CCCGGGG
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcE-------------------eecCccccc-ccchhhh
Confidence 11 1111 02368888888888874 554 777777777 566666666 5677888
Q ss_pred CCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeee--ccCCCCcCCCCEEECCCCcccCCCCc---ccCCCCC
Q 036588 159 NCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGT--IPYAGHLYQLQWLDLSDNQLSGSLPS---FKFKMPL 233 (541)
Q Consensus 159 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~ 233 (541)
.+++|+.|++++|.+.. +| .++.+++|+.|++++|.+++. +..+..+++|+.|++++|.+.+..+. .+..+|+
T Consensus 484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~ 561 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 561 (567)
T ss_dssp GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTT
T ss_pred cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcc
Confidence 88888888888888874 55 788888888898888888876 45578888899999988888754332 2233778
Q ss_pred ccEEec
Q 036588 234 LQFLDL 239 (541)
Q Consensus 234 L~~L~l 239 (541)
|+.|++
T Consensus 562 L~~L~l 567 (567)
T 1dce_A 562 VSSILT 567 (567)
T ss_dssp CSEEEC
T ss_pred cCccCC
Confidence 887753
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-14 Score=150.72 Aligned_cols=202 Identities=18% Similarity=0.231 Sum_probs=104.4
Q ss_pred CccccceeeeCCCCCCeEEEEecCCcceeeeCCcccCCCCCcEecccc-----cccCCccchhhhhcCCCcEEEeecCcc
Q 036588 7 SVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSF-----NWFSGSIPASIFNMSSLLSINFINNAL 81 (541)
Q Consensus 7 ~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~-----~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (541)
....|.+.++. .++++.|++.++.+.. .+..+.....|+.+.+.. +.+. ..+..+..++.|++|+|++|.+
T Consensus 161 ~~~~~~~~~~s--~~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l 236 (727)
T 4b8c_D 161 PSGTATNSAVS--TPLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQI 236 (727)
T ss_dssp -----------------------------------------------------------------CCCCCCEEECTTSCC
T ss_pred ccccCCCceec--CCccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCC
Confidence 44567666554 4689999999999985 455554555555544433 3444 5677888999999999999998
Q ss_pred CCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCC
Q 036588 82 FGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCS 161 (541)
Q Consensus 82 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 161 (541)
..+|..++. +++|++|+|++|.++ .+|..++++++|++ |++++|.+. .+|..+..++
T Consensus 237 -~~l~~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~-------------------L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 237 -FNISANIFK-YDFLTRLYLNGNSLT-ELPAEIKNLSNLRV-------------------LDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp -SCCCGGGGG-CCSCSCCBCTTSCCS-CCCGGGGGGTTCCE-------------------EECTTSCCS-SCCSSGGGGT
T ss_pred -CCCChhhcC-CCCCCEEEeeCCcCc-ccChhhhCCCCCCE-------------------EeCcCCcCC-ccChhhcCCC
Confidence 488888886 999999999999988 77888888888877 566666666 5577888899
Q ss_pred CccEEEeccCcccccCCccccccCCCcEEEccCceeeeeccC-CCCc-CCCCEEECCCCcccCCCCcccCCCCCccEEec
Q 036588 162 YLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPY-AGHL-YQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDL 239 (541)
Q Consensus 162 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 239 (541)
+|+.|++++|.+. .+|..|+.+++|+.|++++|.+.+..+. +... .....+++++|.+....|. .|+.|++
T Consensus 294 ~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l 366 (727)
T 4b8c_D 294 QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEI 366 (727)
T ss_dssp TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C------
T ss_pred CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEe
Confidence 9999999999887 6777888999999999999988765443 2211 1112355666666544443 4555556
Q ss_pred cCC
Q 036588 240 SSN 242 (541)
Q Consensus 240 ~~~ 242 (541)
+.+
T Consensus 367 ~~n 369 (727)
T 4b8c_D 367 NTD 369 (727)
T ss_dssp ---
T ss_pred ecc
Confidence 555
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.9e-13 Score=113.11 Aligned_cols=122 Identities=21% Similarity=0.286 Sum_probs=89.9
Q ss_pred ccccceeeeCCC---------CCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeec
Q 036588 8 VCNWTGITCDVR---------TYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFIN 78 (541)
Q Consensus 8 ~~~~~~~~~~~~---------~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 78 (541)
.|.|.++.|... ..++++|+++++.+++..+..|+.+++|++|++++|.++...+..+.++++|++|++++
T Consensus 6 ~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp EEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 467888777432 24788888888888876667778888888888888888755555677888888888888
Q ss_pred CccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCcc
Q 036588 79 NALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDF 130 (541)
Q Consensus 79 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~ 130 (541)
|.+. .++...+..+++|++|++++|.++...+..+..+++|+++++++|++
T Consensus 86 N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 86 NKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCcc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 8874 55555544488888888888888765555667788888877766654
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.44 E-value=5.1e-13 Score=114.95 Aligned_cols=128 Identities=22% Similarity=0.250 Sum_probs=78.0
Q ss_pred EEEEecCCcceeeeCCcccCCCCCcEecccccccCCccch-hhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeecc
Q 036588 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPA-SIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLK 102 (541)
Q Consensus 24 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 102 (541)
+++++++++++ .+|..+.. ++++|++++|.+++..+. .+.++++|++|++++|.+.+..|..+.. +++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-ASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-cccCCEEECC
Confidence 46667777776 45554433 777777777777633333 3667777777777777764444444444 7777777777
Q ss_pred ccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCccc
Q 036588 103 SNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFS 174 (541)
Q Consensus 103 ~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 174 (541)
+|+++...+..+..+++|++ |++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~-------------------L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKT-------------------LNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCE-------------------EECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcCCccCHHHhcCCCCCCE-------------------EECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 77666555555555555555 444445555555555666666666666666554
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.6e-13 Score=113.14 Aligned_cols=127 Identities=24% Similarity=0.262 Sum_probs=88.4
Q ss_pred EEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccc
Q 036588 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKS 103 (541)
Q Consensus 24 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 103 (541)
+++++++++++ .+|..+. ++|++|++++|.++ .+|..|.++++|++|++++|.+. .++...+.++++|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCC
Confidence 46777888887 4555443 57888888888887 77788888888888888888874 44444444488888888888
Q ss_pred cccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCccc
Q 036588 104 NMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFS 174 (541)
Q Consensus 104 ~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 174 (541)
|.++...+..|..+++|++ |++++|.+....+..|..+++|+.|++.+|.+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~-------------------L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRL-------------------LSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCE-------------------EECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCE-------------------EECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 8887666666777776666 444445555444445666677777777766553
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-12 Score=110.36 Aligned_cols=128 Identities=25% Similarity=0.282 Sum_probs=76.1
Q ss_pred ccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccC
Q 036588 379 LEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSD 457 (541)
Q Consensus 379 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~ 457 (541)
.+.+++.++.+. .++.. ..++|++|++++|.+....+..+..+++|+.|++++|.+....+. +..+++|+.|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTT--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCC--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 355666666654 22222 235677777777776655555566667777777777666544433 45566666666666
Q ss_pred CcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceec
Q 036588 458 NQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 458 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 510 (541)
|.+....+..+..+++|++|++++|.+. .++...+..+++|+.|++++|++.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCee
Confidence 6666544445556666666666666663 344444555666666666666655
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.5e-13 Score=115.19 Aligned_cols=130 Identities=18% Similarity=0.095 Sum_probs=62.3
Q ss_pred CCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCC-CcccCCcceE
Q 036588 375 NLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWL 453 (541)
Q Consensus 375 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L 453 (541)
.+++|+.|++.+|.+.. ++......++|++|++++|.+... ..+..+++|+.|++++|.+....+. +..+++|+.|
T Consensus 17 ~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 45556666666665542 222112223555566655555532 3455555555555555555433323 2445555555
Q ss_pred eccCCcCCCCCCc--cccCCCCccEeeCCCCccccccCcc---cccCCcccceeeecccee
Q 036588 454 DLSDNQLSGSLPS--FKFKMPLLQFLDLSSNRLSTELPTN---VFHNLPFLEELYLSNNMF 509 (541)
Q Consensus 454 ~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~ 509 (541)
++++|.+. .++. .+..+++|+.|++++|++. .++.. .+..+++|+.|++++|..
T Consensus 94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 55555554 2222 3444555555555555552 23322 244455555555555443
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.3e-12 Score=109.77 Aligned_cols=127 Identities=21% Similarity=0.225 Sum_probs=95.9
Q ss_pred cEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCC
Q 036588 48 QTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSL 127 (541)
Q Consensus 48 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~ 127 (541)
++++++++.++ .+|..+. ++|++|++++|.+ +.+|..+.. +++|++|++++|.++...+..|..+++|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i-~~ip~~~~~-l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~----- 82 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQF-TLVPKELSN-YKHLTLIDLSNNRISTLSNQSFSNMTQLLT----- 82 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCC-CSCCGGGGG-CTTCCEEECCSSCCCCCCTTTTTTCTTCCE-----
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcC-chhHHHhhc-ccCCCEEECCCCcCCEeCHhHccCCCCCCE-----
Confidence 67888888887 7776553 5889999999888 477765555 889999999888888777777877777777
Q ss_pred CccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceee
Q 036588 128 NDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQ 198 (541)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~ 198 (541)
|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 83 --------------L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 83 --------------LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp --------------EECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred --------------EECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 555566666666667788888888888888887555556777777888877777654
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-13 Score=143.54 Aligned_cols=116 Identities=29% Similarity=0.447 Sum_probs=54.5
Q ss_pred cccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccC
Q 036588 346 SFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLT 425 (541)
Q Consensus 346 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 425 (541)
..+..++.|+.|++++|.+. .++...+ .+++|+.|++++|.+. .++..+..+++|++|++++|.++ ..|..+..++
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp ----CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred hhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 33444455555555555544 3444433 4555555555555544 44444455555555555555554 3344455555
Q ss_pred CCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCC
Q 036588 426 KLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLP 465 (541)
Q Consensus 426 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 465 (541)
+|+.|++++|.+......+..+++|+.|++++|.+...++
T Consensus 294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred CCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCCh
Confidence 5555555555544332234444555555555555443333
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.4e-10 Score=110.00 Aligned_cols=314 Identities=10% Similarity=-0.009 Sum_probs=148.9
Q ss_pred cccccCCCcEEEccCceeeeeccC-CCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCC
Q 036588 180 EISNLTKLEKLDLQYNKLQGTIPY-AGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPF 258 (541)
Q Consensus 180 ~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 258 (541)
++....+|+++.+... ++..... +..+.+|+.+.+..+ ++.....++..+ +|+.+.+..+- ..+....|..+ +
T Consensus 41 ~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~l--~~I~~~aF~~~-~ 114 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMERV--KKFGDYVFQGT-D 114 (379)
T ss_dssp TGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTTC--CEECTTTTTTC-C
T ss_pred ccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCcee--eEeccceeccC-C
Confidence 4555677888888653 4444443 777888888888643 443444455554 56666665431 24455566654 6
Q ss_pred CcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCc
Q 036588 259 LEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDN 338 (541)
Q Consensus 259 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 338 (541)
|+.+.+... +.......|..+ +++.+.+..+ +.......+..+.+++.+.+..................
T Consensus 115 L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------- 183 (379)
T 4h09_A 115 LDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKN-------- 183 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETT--------
T ss_pred cccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccc--------
Confidence 888877654 233445555554 4666655443 22233345566777777776654322111110000000
Q ss_pred cccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccc
Q 036588 339 QLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIP 418 (541)
Q Consensus 339 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 418 (541)
......+..+..+..+.+..... .+....+..+..|+.+.+...- .......+.++..|+.+.+..+ +..+..
T Consensus 184 ---~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~~-~~i~~~~f~~~~~L~~i~lp~~-v~~I~~ 256 (379)
T 4h09_A 184 ---KTILESYPAAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSGV-TTLGDGAFYGMKALDEIAIPKN-VTSIGS 256 (379)
T ss_dssp ---SSEEEECCTTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTTC-CEECTTTTTTCSSCCEEEECTT-CCEECT
T ss_pred ---cceecccccccccccccccccee--EEeecccccccccceeeeccce-eEEccccccCCccceEEEcCCC-ccEeCc
Confidence 00011122223333333322211 1222333344445555444321 1122334445555555555433 333344
Q ss_pred hhhhccCCCcEEEccccccccccC-CCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCc
Q 036588 419 KEISNLTKLEKLDLQYNRLQGTIP-YAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLP 497 (541)
Q Consensus 419 ~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 497 (541)
.+|..+.+|+.+.+... +..... .+..+++|+.+.+.++.+..+...+|.+|.+|+.+.+..+ + ..+....|.+|.
T Consensus 257 ~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l-~~I~~~aF~~C~ 333 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-L-KTIQVYAFKNCK 333 (379)
T ss_dssp TTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-C-CEECTTTTTTCT
T ss_pred cccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-c-cEEHHHHhhCCC
Confidence 44555555555555332 111111 1444555555555554444444455555566666665432 2 334445555666
Q ss_pred ccceeeeccceecccCCCCCCCcc
Q 036588 498 FLEELYLSNNMFYGEIPSDTPNCS 521 (541)
Q Consensus 498 ~L~~L~l~~~~~~~~~~~~~~~~~ 521 (541)
+|+.+.+..+ +..+...+|..+.
T Consensus 334 ~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 334 ALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TCCCCCCCTT-CCEECTTTTTTSS
T ss_pred CCCEEEECCc-cCEEchhHhhCCC
Confidence 6666655433 3334444555553
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.8e-12 Score=108.75 Aligned_cols=134 Identities=19% Similarity=0.152 Sum_probs=102.1
Q ss_pred cCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCC
Q 036588 348 KFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKL 427 (541)
Q Consensus 348 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 427 (541)
+..+++|+.|++++|.++ .++ ......++|+.|++++|.+.+. ..+..+++|++|++++|.+....+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhH-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 345677778888877776 333 2333445888888888887654 577888899999999998886655667889999
Q ss_pred cEEEccccccccccC--CCcccCCcceEeccCCcCCCCCCc----cccCCCCccEeeCCCCcccc
Q 036588 428 EKLDLQYNRLQGTIP--YAGHLFQLQWLDLSDNQLSGSLPS----FKFKMPLLQFLDLSSNRLST 486 (541)
Q Consensus 428 ~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~ 486 (541)
+.|++++|.+..... .+..+++|+.|++++|++.. .+. .+..+++|+.|++++|....
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 999999998865444 46778899999999998874 444 47889999999999987643
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.4e-10 Score=108.92 Aligned_cols=78 Identities=12% Similarity=0.048 Sum_probs=42.9
Q ss_pred CcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhcc
Q 036588 345 PSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNL 424 (541)
Q Consensus 345 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 424 (541)
...|..|++|+.+.+.++.++ .+....|.+|.+|+.+.+..+ +......+|.+|++|+.+.+..+ +..+...+|..|
T Consensus 279 ~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 279 YLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp TTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred ccccccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 344555566666666555544 455556666666666666543 22234455666666666666543 444445556555
Q ss_pred C
Q 036588 425 T 425 (541)
Q Consensus 425 ~ 425 (541)
.
T Consensus 356 ~ 356 (379)
T 4h09_A 356 S 356 (379)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.30 E-value=4e-14 Score=122.77 Aligned_cols=128 Identities=24% Similarity=0.252 Sum_probs=70.4
Q ss_pred CeEEEEecCCcceeeeCC------cccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCC
Q 036588 22 RVTALNISGLNLTVTIPS------ELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSN 95 (541)
Q Consensus 22 ~l~~L~l~~~~i~~~~~~------~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~ 95 (541)
.++.++++++.+++..|. .|+.+++|++|++++|.++ .+| .+.++++|++|++++|.+. .+|..+.. +++
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~-~~~ 94 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAV-ADT 94 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH-HHH
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc-ccccCCCCCEEECCCCCcc-cccchhhc-CCc
Confidence 344444444444444443 6667777777777777666 355 6666777777777777663 55554443 667
Q ss_pred CcEeeccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCC-ccccCCCCccEEEeccCccc
Q 036588 96 LESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIP-SDIANCSYLRILVLQFNNFS 174 (541)
Q Consensus 96 L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~ 174 (541)
|++|++++|+++. ++ .+..+++|++ |++++|.+.+... ..+..+++|+.|++++|.+.
T Consensus 95 L~~L~L~~N~l~~-l~-~~~~l~~L~~-------------------L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-GIEKLVNLRV-------------------LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp CSEEEEEEEECCC-HH-HHHHHHHSSE-------------------EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CCEEECcCCcCCc-CC-ccccCCCCCE-------------------EECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 7777777666653 22 2333333333 4444444443211 23455555666666655554
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.25 E-value=2.5e-14 Score=124.06 Aligned_cols=111 Identities=25% Similarity=0.206 Sum_probs=59.9
Q ss_pred hhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcc
Q 036588 372 VFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQ 451 (541)
Q Consensus 372 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~ 451 (541)
.+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+. ..+..+..+++|+.|++++|++.+. +.+..+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-SGIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-HHHHHHHHSS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-CccccCCCCC
Confidence 34456666666666666553 33 5555666666666666555 2344445556666666666655532 2344455566
Q ss_pred eEeccCCcCCCCCC-ccccCCCCccEeeCCCCcccc
Q 036588 452 WLDLSDNQLSGSLP-SFKFKMPLLQFLDLSSNRLST 486 (541)
Q Consensus 452 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~ 486 (541)
.|++++|.+..... ..+..+++|++|++++|++.+
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 66666555543111 234455555555555555533
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.23 E-value=4e-11 Score=100.65 Aligned_cols=105 Identities=24% Similarity=0.283 Sum_probs=89.1
Q ss_pred eEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeecc
Q 036588 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLK 102 (541)
Q Consensus 23 l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 102 (541)
.++++++++.++. +|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+ +.+|...+.++++|++|+++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCc-CccChhhccCCCCCCEEECC
Confidence 3578888999984 666553 8999999999999977788999999999999999998 46777766669999999999
Q ss_pred ccccCccCCccCCCCCCCcEEecCCCccc
Q 036588 103 SNMFHGKIPSTLSSCKRLRETSLSLNDFF 131 (541)
Q Consensus 103 ~~~~~~~~~~~~~~l~~L~~l~~~~~~~~ 131 (541)
+|+++...+..|.++++|+++++++|++.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 99999777778999999999888777653
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.4e-11 Score=100.19 Aligned_cols=104 Identities=22% Similarity=0.285 Sum_probs=89.6
Q ss_pred EEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccc
Q 036588 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKS 103 (541)
Q Consensus 24 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 103 (541)
+.++++++.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+ +.+|..++.++++|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL-TAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCC-CccChhHhCCcchhhEEECCC
Confidence 68999999998 5676664 8999999999999977788999999999999999998 567777766699999999999
Q ss_pred cccCccCCccCCCCCCCcEEecCCCccc
Q 036588 104 NMFHGKIPSTLSSCKRLRETSLSLNDFF 131 (541)
Q Consensus 104 ~~~~~~~~~~~~~l~~L~~l~~~~~~~~ 131 (541)
|++....+..+..+++|+++++++|++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 9999766667999999999888777653
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.19 E-value=9.8e-11 Score=98.25 Aligned_cols=104 Identities=29% Similarity=0.302 Sum_probs=50.3
Q ss_pred CCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCC
Q 036588 403 LRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSS 481 (541)
Q Consensus 403 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 481 (541)
.+.++++++.+... |..+ .++|+.|++++|.+....+. +..+++|+.|++++|.+....+..+..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~i-p~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASV-PTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCcc-CccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 35566666655532 2222 14555555555555444332 44455555555555555544444444555555555555
Q ss_pred CccccccCcccccCCcccceeeeccceec
Q 036588 482 NRLSTELPTNVFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 482 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 510 (541)
|.+. .++...+..+++|+.|++++|++.
T Consensus 88 N~l~-~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLK-SIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccC-EeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5542 233334444555555555555544
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.18 E-value=1e-10 Score=98.44 Aligned_cols=103 Identities=29% Similarity=0.385 Sum_probs=53.5
Q ss_pred CeEEcccCCCCCccchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCC
Q 036588 404 RILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSN 482 (541)
Q Consensus 404 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 482 (541)
+.++++++.+.. .|..+. ++|+.|++++|.+....+. +..+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 456666665543 222222 5556666666655544332 445555555555555555443344455555555555555
Q ss_pred ccccccCcccccCCcccceeeeccceec
Q 036588 483 RLSTELPTNVFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 483 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 510 (541)
.+. .++...+..+++|+.|++++|++.
T Consensus 92 ~l~-~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLK-SIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCC-CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccc-eeCHHHhccccCCCEEEeCCCCcc
Confidence 552 244344555555555555555554
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=9.5e-12 Score=118.38 Aligned_cols=86 Identities=22% Similarity=0.222 Sum_probs=57.0
Q ss_pred CcceEEEecCcccccc----CCccccCCCCccEEEeccCcccccC----CccccccCCCcEEEccCceeeeec-----cC
Q 036588 137 RNWQQLYLSKNMFYGE----IPSDIANCSYLRILVLQFNNFSGAI----PKEISNLTKLEKLDLQYNKLQGTI-----PY 203 (541)
Q Consensus 137 ~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~i~~~~----~~~l~~l~~L~~L~l~~~~~~~~~-----~~ 203 (541)
++|+.|++++|.+.+. ++..+..+++|++|++++|.+.+.. +..+...++|++|++++|.+++.. ..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 4566677777766542 2334466778888888888776432 344566678888888888776422 12
Q ss_pred CCCcCCCCEEECCCCcccC
Q 036588 204 AGHLYQLQWLDLSDNQLSG 222 (541)
Q Consensus 204 ~~~~~~L~~L~l~~~~~~~ 222 (541)
+...++|++|++++|.+..
T Consensus 235 L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 235 AREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHCSSCCEEECTTSSCCH
T ss_pred HHhCCCCCEEeccCCCCCH
Confidence 4456788888888887754
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.6e-12 Score=121.32 Aligned_cols=155 Identities=17% Similarity=0.101 Sum_probs=79.7
Q ss_pred CCCcEecccccccCCccchhhhhc-----CCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccC-----
Q 036588 45 SSLQTLDLSFNWFSGSIPASIFNM-----SSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTL----- 114 (541)
Q Consensus 45 ~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----- 114 (541)
++|+.|++++|.++......+... ++|++|++++|.+.......+...+++|++|++++|.+++.....+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 344455555554443222222222 3455555555544322223333334455555555554443222222
Q ss_pred CCCCCCcEEecCCCccc---------cccccCcceEEEecCccccccC----CccccCCCCccEEEeccCcccccC----
Q 036588 115 SSCKRLRETSLSLNDFF---------WDHTKRNWQQLYLSKNMFYGEI----PSDIANCSYLRILVLQFNNFSGAI---- 177 (541)
Q Consensus 115 ~~l~~L~~l~~~~~~~~---------~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~i~~~~---- 177 (541)
...++|++|++++|.+. .....++|++|++++|.+.+.. ...+..+++|+.|++++|.+.+..
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 22344555555555442 1123455666777777665432 344566778888888888876432
Q ss_pred CccccccCCCcEEEccCceeee
Q 036588 178 PKEISNLTKLEKLDLQYNKLQG 199 (541)
Q Consensus 178 ~~~l~~l~~L~~L~l~~~~~~~ 199 (541)
+..+...++|++|++++|.+.+
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHhCCCCCEEeccCCCCCH
Confidence 2334456788888888887764
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.83 E-value=9.2e-09 Score=97.55 Aligned_cols=101 Identities=17% Similarity=0.149 Sum_probs=77.1
Q ss_pred EecCC-cceeeeCCcccCCCCCcEecccc-cccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeecccc
Q 036588 27 NISGL-NLTVTIPSELGNLSSLQTLDLSF-NWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSN 104 (541)
Q Consensus 27 ~l~~~-~i~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 104 (541)
+.++. +++ .+|. |..+++|+.|+|++ |.+++..+..|.++++|++|+|++|.+.+ ++...+.++++|++|+|++|
T Consensus 14 ~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 14 RCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp ECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEECCSS
T ss_pred EcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeCCCC
Confidence 44455 676 4677 99999999999996 88886666789999999999999998854 44444444999999999999
Q ss_pred ccCccCCccCCCCCCCcEEecCCCccc
Q 036588 105 MFHGKIPSTLSSCKRLRETSLSLNDFF 131 (541)
Q Consensus 105 ~~~~~~~~~~~~l~~L~~l~~~~~~~~ 131 (541)
++....+..+..+. |++|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 99866555666555 888777776654
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.75 E-value=2.8e-08 Score=94.20 Aligned_cols=102 Identities=25% Similarity=0.241 Sum_probs=57.2
Q ss_pred EEcccC-cCcCcCChhhhcCCCCccEEEccC-cccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccc
Q 036588 357 LDLSSN-RLSVELPTNVFHNLPFLEELYLSN-NMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQY 434 (541)
Q Consensus 357 L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 434 (541)
++.+++ .++ .+|. +..+++|+.|++++ |.+....+..|..+++|+.|++++|.+....+..|..+++|+.|+|++
T Consensus 13 v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 455554 454 4444 44556666666664 665544445566666666666666666655555666666666666666
Q ss_pred cccccccCCCcccCCcceEeccCCcCC
Q 036588 435 NRLQGTIPYAGHLFQLQWLDLSDNQLS 461 (541)
Q Consensus 435 ~~~~~~~~~~~~~~~L~~L~l~~~~~~ 461 (541)
|++....+.......|+.|++.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CccceeCHHHcccCCceEEEeeCCCcc
Confidence 666544433222222666666665554
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.64 E-value=5.9e-09 Score=98.20 Aligned_cols=139 Identities=21% Similarity=0.302 Sum_probs=75.6
Q ss_pred hhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhh--ccCCCcEEEcccc--ccc------cc
Q 036588 371 NVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEIS--NLTKLEKLDLQYN--RLQ------GT 440 (541)
Q Consensus 371 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~--~~~------~~ 440 (541)
..+..+|+|+.|.+.++.-. .++. + ..++|++|++..|.+.......+. .+++|+.|+|+.+ ... ..
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 34456677777777665211 1221 2 267778888777766544444443 5777887777531 111 01
Q ss_pred cCCC--cccCCcceEeccCCcCCCCCCccc---cCCCCccEeeCCCCccccccC---cccccCCcccceeeeccceeccc
Q 036588 441 IPYA--GHLFQLQWLDLSDNQLSGSLPSFK---FKMPLLQFLDLSSNRLSTELP---TNVFHNLPFLEELYLSNNMFYGE 512 (541)
Q Consensus 441 ~~~~--~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~ 512 (541)
.+.+ ..+++|+.|++.+|.+.+.....+ ..+|+|++|+++.|.+.+... ...+.++++|+.|++++|.+++.
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 1111 246777777777766553222111 246677777777776633211 01234466777777777776644
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.64 E-value=6.5e-09 Score=97.91 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=45.9
Q ss_pred CCCCccEEEeccCcccccCCcccc---ccCCCcEEEccCceeeee-----ccCCCCcCCCCEEECCCCcccC
Q 036588 159 NCSYLRILVLQFNNFSGAIPKEIS---NLTKLEKLDLQYNKLQGT-----IPYAGHLYQLQWLDLSDNQLSG 222 (541)
Q Consensus 159 ~~~~L~~L~l~~~~i~~~~~~~l~---~l~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~ 222 (541)
.+|+|+.|++.+|.+.+..+..+. .+++|++|+++.|.+.+. ...+..+++|+.|++++|.+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 578999999988887654333333 467899999988877652 2224567899999998887653
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.51 E-value=7.6e-09 Score=85.14 Aligned_cols=85 Identities=8% Similarity=-0.026 Sum_probs=56.5
Q ss_pred CCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccC----Ccccceeeeccce-ecccCCCCCCCccc
Q 036588 448 FQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHN----LPFLEELYLSNNM-FYGEIPSDTPNCSY 522 (541)
Q Consensus 448 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~-~~~~~~~~~~~~~~ 522 (541)
..|+.|++++|.+++.....+..+++|++|++++|...++.....+.. +++|++|++++|. +++.....++.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356777777776666555566677777777777776434333233443 2467888888775 77666666777788
Q ss_pred cceEEeeccc
Q 036588 523 LRILVVQFNN 532 (541)
Q Consensus 523 L~~L~l~~~~ 532 (541)
|+.|++++|+
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 8888888875
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.26 E-value=1.8e-07 Score=77.01 Aligned_cols=81 Identities=11% Similarity=-0.000 Sum_probs=34.2
Q ss_pred CCcEecccccccCCccchhhhhcCCCcEEEeecCc-cCCCCChhhhh---hcCCCcEeeccccc-cCccCCccCCCCCCC
Q 036588 46 SLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNA-LFGELPPNFCN---HLSNLESLFLKSNM-FHGKIPSTLSSCKRL 120 (541)
Q Consensus 46 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~---~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L 120 (541)
+|+.||++++.+++.....+.++++|++|++++|. +++.....+.. .+++|++|++++|. +++.....+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 44555555544444444444445555555555543 22211222222 02345555555542 443333334444444
Q ss_pred cEEecC
Q 036588 121 RETSLS 126 (541)
Q Consensus 121 ~~l~~~ 126 (541)
++|+++
T Consensus 142 ~~L~L~ 147 (176)
T 3e4g_A 142 KYLFLS 147 (176)
T ss_dssp CEEEEE
T ss_pred CEEECC
Confidence 443333
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=3.4e-07 Score=77.58 Aligned_cols=66 Identities=17% Similarity=0.167 Sum_probs=32.8
Q ss_pred hcCCCCccEEEccCc-ccccC----CCcCCcCCccCCeEEcccCCCCCccc----hhhhccCCCcEEEccccccc
Q 036588 373 FHNLPFLEELYLSNN-MFYGE----IPSDTQNCSYLRILVLKFNNFPGAIP----KEISNLTKLEKLDLQYNRLQ 438 (541)
Q Consensus 373 ~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~ 438 (541)
+...++|++|++++| .+... +...+...++|++|++++|.+..... ..+...++|++|++++|.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 334555555555555 44321 12233445566666666666554222 22333455666666665554
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=3.4e-07 Score=77.62 Aligned_cols=115 Identities=18% Similarity=0.102 Sum_probs=64.2
Q ss_pred CCcCCccCCeEEcccC-CCCCcc----chhhhccCCCcEEEccccccccccC-----CCcccCCcceEeccCCcCCCC--
Q 036588 396 DTQNCSYLRILVLKFN-NFPGAI----PKEISNLTKLEKLDLQYNRLQGTIP-----YAGHLFQLQWLDLSDNQLSGS-- 463 (541)
Q Consensus 396 ~~~~~~~L~~L~l~~~-~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~-- 463 (541)
.+...++|++|++++| .+.... ...+...++|++|++++|.+..... .+...++|++|++++|.+.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4456677888888887 766532 2334456777777777777653211 123445666777776666542
Q ss_pred --CCccccCCCCccEeeC--CCCccccccC---cccccCCcccceeeeccceec
Q 036588 464 --LPSFKFKMPLLQFLDL--SSNRLSTELP---TNVFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 464 --~~~~~~~~~~L~~L~l--~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~ 510 (541)
+...+...++|++|++ ++|.+..... ...+...++|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2334445566666666 5565532110 023334456666666666554
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.02 E-value=4.6e-06 Score=74.20 Aligned_cols=64 Identities=25% Similarity=0.356 Sum_probs=29.8
Q ss_pred cCCCCCcEecccccccCC--ccchhhhhcCCCcEEEeecCccCCCCChhhhhhcC--CCcEeeccccccCc
Q 036588 42 GNLSSLQTLDLSFNWFSG--SIPASIFNMSSLLSINFINNALFGELPPNFCNHLS--NLESLFLKSNMFHG 108 (541)
Q Consensus 42 ~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~ 108 (541)
.++++|+.|+|++|.+++ .+|..+..+++|++|+|++|.+.+. ..+.. +. +|++|++++|.+..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~-l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDK-IKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGG-GTTSCCSEEECTTSTTGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhh-cccCCcceEEccCCcCcc
Confidence 344555555555555543 2334445555555555555554221 11211 22 55555555555543
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.91 E-value=2.8e-06 Score=75.60 Aligned_cols=83 Identities=24% Similarity=0.266 Sum_probs=48.2
Q ss_pred hhcCCCcEEEeecCccCC--CCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEE
Q 036588 66 FNMSSLLSINFINNALFG--ELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLY 143 (541)
Q Consensus 66 ~~l~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~ 143 (541)
.++++|++|+|++|.+.+ .++..+. .+++|++|+|++|++.+. ..+..+. .. +|++|+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~-~l~~L~~L~Ls~N~i~~~--~~l~~l~----------------~l-~L~~L~ 226 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQ-KAPNLKILNLSGNELKSE--RELDKIK----------------GL-KLEELW 226 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHH-HSTTCCEEECTTSCCCSG--GGGGGGT----------------TS-CCSEEE
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHh-hCCCCCEEECCCCccCCc--hhhhhcc----------------cC-CcceEE
Confidence 456777777777777643 2223333 377777777777777643 2222222 01 445566
Q ss_pred ecCccccccCC-------ccccCCCCccEEEe
Q 036588 144 LSKNMFYGEIP-------SDIANCSYLRILVL 168 (541)
Q Consensus 144 l~~~~~~~~~~-------~~~~~~~~L~~L~l 168 (541)
+++|.+.+..+ ..+..+|+|+.|+-
T Consensus 227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp CTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred ccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 66666654333 23567888888863
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.00089 Score=56.12 Aligned_cols=67 Identities=16% Similarity=0.130 Sum_probs=34.0
Q ss_pred hhcCCCCccEEEccCc-ccccC----CCcCCcCCccCCeEEcccCCCCCccc----hhhhccCCCcEEEccccccc
Q 036588 372 VFHNLPFLEELYLSNN-MFYGE----IPSDTQNCSYLRILVLKFNNFPGAIP----KEISNLTKLEKLDLQYNRLQ 438 (541)
Q Consensus 372 ~~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~ 438 (541)
....-+.|++|++.++ .+... +...+..-+.|+.|++++|++.+... +.+..-+.|+.|+|++|.+.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3334566666666654 44321 22233444566666666666654222 23334455666666665554
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.00091 Score=56.04 Aligned_cols=82 Identities=12% Similarity=0.086 Sum_probs=35.4
Q ss_pred CccCCeEEcccC-CCCCc----cchhhhccCCCcEEEccccccccccCC-----CcccCCcceEeccCCcCCCC----CC
Q 036588 400 CSYLRILVLKFN-NFPGA----IPKEISNLTKLEKLDLQYNRLQGTIPY-----AGHLFQLQWLDLSDNQLSGS----LP 465 (541)
Q Consensus 400 ~~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~----~~ 465 (541)
-+.|++|+++++ ++... ..+.+..-..|+.|+|++|.+.+.... +..-+.|+.|+|++|.+.+. +.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 345555555543 44321 122333345555555555554432211 12334455555555555431 11
Q ss_pred ccccCCCCccEeeCCC
Q 036588 466 SFKFKMPLLQFLDLSS 481 (541)
Q Consensus 466 ~~~~~~~~L~~L~l~~ 481 (541)
.++..-..|++|++++
T Consensus 120 ~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHTTTTCCCSEEECCC
T ss_pred HHHhhCCceeEEECCC
Confidence 2233344455555544
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.026 Score=43.91 Aligned_cols=56 Identities=30% Similarity=0.341 Sum_probs=41.9
Q ss_pred eEeccCCcCC-CCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceec
Q 036588 452 WLDLSDNQLS-GSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 452 ~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 510 (541)
.++.++..++ ..+|..+ .++|++|+|++|.+ +.++...|..+++|+.|+|.+|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNL-TALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCC-SSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcC-CccChhhhhhccccCEEEecCCCee
Confidence 6677777665 2444332 34689999999998 5577788888899999999999876
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.072 Score=41.36 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=16.4
Q ss_pred CCcEEEeecCccCCCCChhhhhhcCCCcEeeccccc
Q 036588 70 SLLSINFINNALFGELPPNFCNHLSNLESLFLKSNM 105 (541)
Q Consensus 70 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 105 (541)
+|++|+|++|.+ +.++..++..+++|++|+|++|.
T Consensus 32 ~l~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNL-TALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCC-SSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcC-CccChhhhhhccccCEEEecCCC
Confidence 345555555554 34444444444455555444443
|
| >2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus} | Back alignment and structure |
|---|
Probab=82.34 E-value=1.7 Score=31.63 Aligned_cols=48 Identities=19% Similarity=0.194 Sum_probs=32.2
Q ss_pred CcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccc
Q 036588 458 NQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507 (541)
Q Consensus 458 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 507 (541)
-.++.+...+|.+|.+|+.+.|-..- ..+....|.+|.+|+.+.+.+.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~v--~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPNI--GLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTTS--SCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCch--heEcHHHHhccCCccEEEEcCC
Confidence 34455666677788888888876542 2455567778888888877643
|
| >2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus} | Back alignment and structure |
|---|
Probab=81.27 E-value=2.9 Score=30.35 Aligned_cols=43 Identities=16% Similarity=0.198 Sum_probs=22.1
Q ss_pred cCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEccc
Q 036588 367 ELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKF 410 (541)
Q Consensus 367 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 410 (541)
.+....|.+|.+|+.+.+...- +......|.+|.+|+.+.+.+
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECC
T ss_pred EecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcC
Confidence 3444555555555555555432 223444555555555555544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 541 | ||||
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 5e-25 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-19 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 3e-18 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 5e-14 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 7e-14 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 3e-22 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-17 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-14 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-09 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 4e-08 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 7e-19 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 3e-17 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 2e-15 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 3e-15 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 2e-13 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 8e-18 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-17 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 5e-17 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 6e-16 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-14 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 0.002 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 4e-12 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 8e-10 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 8e-10 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 6e-09 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 3e-08 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 6e-08 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 0.004 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-09 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-08 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-07 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-06 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 2e-08 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 6e-08 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 7e-08 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 4e-07 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 7e-07 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 2e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.001 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 2e-07 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 3e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.001 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.002 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.004 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 2e-07 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 4e-07 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 5e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 6e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 2e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 3e-07 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 3e-06 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 2e-05 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 8e-05 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 1e-04 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 2e-06 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 4e-04 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 0.001 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 0.001 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 2e-06 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 9e-06 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 6e-05 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 9e-05 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 2e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 8e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 5e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 5e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.001 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 1e-05 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 2e-05 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 2e-05 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 3e-05 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 7e-05 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 6e-04 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 3e-05 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 0.002 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 0.002 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 3e-04 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 5e-04 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 8e-04 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 0.001 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 0.003 |
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 103 bits (256), Expect = 5e-25
Identities = 57/280 (20%), Positives = 104/280 (37%), Gaps = 12/280 (4%)
Query: 232 PLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFN 291
P LDL +N+++ E+ F NL L L L NN P A L L L N
Sbjct: 31 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89
Query: 292 NFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNM 351
K L +L + + +++ ++ + + + L + + SG M
Sbjct: 90 QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149
Query: 352 PLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFN 411
L ++ ++ ++ +P + + L EL+L N + + + L L L FN
Sbjct: 150 KKLSYIRIADTNIT-TIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205
Query: 412 NFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSG------SLP 465
+ ++N L +L L N+L +Q + L +N +S P
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 265
Query: 466 SFKFKMPLLQFLDLSSNRLST-ELPTNVFHNLPFLEELYL 504
+ K + L SN + E+ + F + + L
Sbjct: 266 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 87.4 bits (215), Expect = 1e-19
Identities = 52/298 (17%), Positives = 96/298 (32%), Gaps = 30/298 (10%)
Query: 94 SNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEI 153
+ L L++N + K L L L N
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHT-------------------LILINNKISKIS 71
Query: 154 PSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWL 213
P A L L L N K L +L + + K++ ++ + + L
Sbjct: 72 PGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL 131
Query: 214 DLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEI 273
+ + SG M L ++ ++ ++ +P + + L EL+L N
Sbjct: 132 GTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPS---LTELHLDGNKITKVD 187
Query: 274 PSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWL 333
+ + L L L FN+ S ++N L +L L N+L + +Q +
Sbjct: 188 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVV 247
Query: 334 DLSDNQLSG------SLPSFKFNMPLLQFLDLSSNRLS-VELPTNVFHNLPFLEELYL 384
L +N +S P + + L SN + E+ + F + + L
Sbjct: 248 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 83.2 bits (204), Expect = 3e-18
Identities = 53/297 (17%), Positives = 88/297 (29%), Gaps = 42/297 (14%)
Query: 9 CNWTGITCDVRTYR---------VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSG 59
C+ + C L++ +T + NL +L TL L N S
Sbjct: 10 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69
Query: 60 SIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLE---------------------- 97
P + + L + N L ELP L L
Sbjct: 70 ISPGAFAPLVKLERLYLSKNQL-KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIV 128
Query: 98 -SLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDF--FWDHTKRNWQQLYLSKNMFYGEIP 154
L G K+L ++ + + +L+L N
Sbjct: 129 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDA 188
Query: 155 SDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLD 214
+ + + L L L FN+ S ++N L +L L NKL +Q +
Sbjct: 189 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVY 248
Query: 215 LSDNQLSG------SLPSFKFKMPLLQFLDLSSNRLSA-ELPTNVFHNLPFLEELYL 264
L +N +S P + K + L SN + E+ + F + + L
Sbjct: 249 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 70.8 bits (172), Expect = 5e-14
Identities = 46/231 (19%), Positives = 79/231 (34%), Gaps = 9/231 (3%)
Query: 281 SYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYV-GHLLQLQWLDLSDNQ 339
+L L+ N + + NL L L L N++ L++L+ L LS NQ
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 340 LSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQN 399
L + L+ + ++ + N + EL + G Q
Sbjct: 91 LKELPEKMPKTLQELRVHENEITKVRKSVFN--GLNQMIVVELGTNPLKSSGIENGAFQG 148
Query: 400 CSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDN 458
L + + N L +L L N++ + L L L LS N
Sbjct: 149 MKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205
Query: 459 QLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMF 509
+S P L+ L L++N+L + +++ +YL NN
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLVKVPGG--LADHKYIQVVYLHNNNI 254
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 70.1 bits (170), Expect = 7e-14
Identities = 39/184 (21%), Positives = 69/184 (37%), Gaps = 5/184 (2%)
Query: 352 PLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFN 411
P LDL +N+++ E+ F NL L L L NN P L L L N
Sbjct: 31 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89
Query: 412 NFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKM 471
K L +L + + +++ ++ + + L + + SG M
Sbjct: 90 QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149
Query: 472 PLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFN 531
L ++ ++ + T +P + +L EL+L N + + L L + FN
Sbjct: 150 KKLSYIRIADTNI-TTIPQGLPPSL---TELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205
Query: 532 NFSG 535
+ S
Sbjct: 206 SISA 209
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 95.6 bits (236), Expect = 3e-22
Identities = 65/286 (22%), Positives = 110/286 (38%), Gaps = 15/286 (5%)
Query: 1 NWNTSSSVCN--WTGITCD--VRTYRVTALNISGLNLT--VTIPSELGNLSSLQTLDLSF 54
+W ++ CN W G+ CD +TYRV L++SGLNL IPS L NL L L +
Sbjct: 26 SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG 85
Query: 55 NWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTL 114
+ L +I + P+F + + L +L N G +P ++
Sbjct: 86 INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 115 SSCKRLRETSLSLNDF------FWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVL 168
SS L + N + + + + +S+N G+IP AN + + +
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS 205
Query: 169 QFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFK 228
+ A S+ + + + DL +N++ G+LP
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGL-DLRNNRIYGTLPQGL 264
Query: 229 FKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIP 274
++ L L++S N L E+P NL + +NN P
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 81.0 bits (198), Expect = 2e-17
Identities = 60/265 (22%), Positives = 99/265 (37%), Gaps = 7/265 (2%)
Query: 205 GHLYQLQWLDLSDNQLSG--SLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEEL 262
Y++ LDLS L +PS +P L FL + L L L
Sbjct: 47 TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 263 YLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTIL 322
Y+++ G IP + L L +N SG +P IS+L L + NR+ G I
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Query: 323 YVGHLLQ--LQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLE 380
+ +S N+L+G +P N+ L +
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 381 ELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGT 440
L ++ F ++N + L L+ N G +P+ ++ L L L++ +N L G
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLD---LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283
Query: 441 IPYAGHLFQLQWLDLSDNQLSGSLP 465
IP G+L + ++N+ P
Sbjct: 284 IPQGGNLQRFDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 72.9 bits (177), Expect = 1e-14
Identities = 66/267 (24%), Positives = 105/267 (39%), Gaps = 9/267 (3%)
Query: 259 LEELYLSNNMFYG--EIPSDTANCSYLRILVLRFN-NFSGAIPKEISNLTKLEKLDLQYN 315
+ L LS IPS AN YL L + N G IP I+ LT+L L + +
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 316 RLQGTILY-VGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFH 374
+ G I + + L LD S N LSG+LP ++P L + NR+S +P +
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171
Query: 375 NLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQY 434
+ +S N G+IP N + + + + A S+ + +
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231
Query: 435 NRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFH 494
+ DL +N++ G+LP ++ L L++S N L E+P
Sbjct: 232 SLAFDLGKVGLSKNLNGL-DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GG 288
Query: 495 NLPFLEELYLSNNMFYGEIPSDTPNCS 521
NL + +NN P P C+
Sbjct: 289 NLQRFDVSAYANNKCLCGSPL--PACT 313
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 57.5 bits (137), Expect = 1e-09
Identities = 58/239 (24%), Positives = 81/239 (33%), Gaps = 25/239 (10%)
Query: 325 GHLLQLQWLDLSDNQLSG--SLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEEL 382
++ LDLS L +PS N+P L FL + V L L L
Sbjct: 47 TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 383 YLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIP 442
Y+++ G IP L L +N G +P IS+L L + NR+ G IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Query: 443 YAGHLFQ--LQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLST-------------- 486
+ F + +S N+L+G +P + L +
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 487 -------ELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIP 538
L L L NN YG +P +L L V FNN G IP
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 52.4 bits (124), Expect = 4e-08
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Query: 9 CNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNM 68
+ + + L++ + T+P L L L +L++SFN G IP N+
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNL 290
Query: 69 SSLLSINFINNALFGELPPNFC 90
+ NN P C
Sbjct: 291 QRFDVSAYANNKCLCGSPLPAC 312
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.9 bits (208), Expect = 7e-19
Identities = 62/256 (24%), Positives = 92/256 (35%), Gaps = 7/256 (2%)
Query: 232 PLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFN 291
Q + L NR+S +P F L L+L +N+ + + L L L N
Sbjct: 32 AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90
Query: 292 NFSGAI-PKEISNLTKLEKLDLQYNRLQGTIL-YVGHLLQLQWLDLSDNQLSGSLPSFKF 349
++ P L +L L L LQ L LQ+L L DN L
Sbjct: 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150
Query: 350 NMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLK 409
++ L L L NR+ +P F L L+ L L N P ++ L L L
Sbjct: 151 DLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209
Query: 410 FNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKF 469
NN + ++ L L+ L L N LQ S +++ SLP
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQ--- 266
Query: 470 KMPLLQFLDLSSNRLS 485
++ L++N L
Sbjct: 267 RLAGRDLKRLAANDLQ 282
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.2 bits (196), Expect = 3e-17
Identities = 51/286 (17%), Positives = 83/286 (29%), Gaps = 14/286 (4%)
Query: 16 CDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSIN 75
C + L +P + ++ Q + L N S AS +L +
Sbjct: 6 CVCYNEPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILW 62
Query: 76 FINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHT 135
+N L F + + P+T RL L
Sbjct: 63 LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP 122
Query: 136 KRNWQQLYLSK-----NMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKL 190
L N + L L L N S + L L++L
Sbjct: 123 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182
Query: 191 DLQYNKLQGTIPYA-GHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELP 249
L N++ P+A L +L L L N LS + LQ+L L+ N +
Sbjct: 183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242
Query: 250 TNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSG 295
+L++ S++ +P A + L N+ G
Sbjct: 243 ARPL--WAWLQKFRGSSSEVPCSLPQRLAG---RDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.5 bits (181), Expect = 2e-15
Identities = 57/273 (20%), Positives = 82/273 (30%), Gaps = 23/273 (8%)
Query: 94 SNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEI 153
+ + +FL N ++ +C+ L L N L +
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS--- 88
Query: 154 PSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQG-TIPYAGHLYQLQW 212
P L +L L L LQ L LQ+
Sbjct: 89 ---------------DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133
Query: 213 LDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGE 272
L L DN L + L L L NR+S +P F L L+ L L N
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHV 192
Query: 273 IPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQW 332
P + L L L NN S + ++ L L+ L L N LQ
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQK 252
Query: 333 LDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLS 365
S +++ SLP + L++N L
Sbjct: 253 FRGSSSEVPCSLPQ---RLAGRDLKRLAANDLQ 282
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.1 bits (180), Expect = 3e-15
Identities = 62/266 (23%), Positives = 102/266 (38%), Gaps = 9/266 (3%)
Query: 176 AIPKEISNLTKLEKLDLQYNKLQGTIPYA-GHLYQLQWLDLSDNQLSGSLPSFKFKMPLL 234
A+P I + +++ L N++ + L L L N L+ + + LL
Sbjct: 25 AVPVGIPAAS--QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82
Query: 235 QFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFS 294
+ LDLS N + FH L L L+L P + L+ L L+ N
Sbjct: 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142
Query: 295 GAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQ-LQWLDLSDNQLSGSLPSFKFNMPL 353
+L L L L NR+ L L L L N+++ P ++
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202
Query: 354 LQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNF 413
L L L +N LS LPT L L+ L L++N + + + ++L+ +
Sbjct: 203 LMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEV 260
Query: 414 PGAIPKEISNLTKLEKLDLQYNRLQG 439
P ++P+ ++ L N LQG
Sbjct: 261 PCSLPQRLAGRD---LKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.7 bits (166), Expect = 2e-13
Identities = 57/248 (22%), Positives = 95/248 (38%), Gaps = 6/248 (2%)
Query: 296 AIPKEISNLTKLEKLDLQYNRLQGTILYV-GHLLQLQWLDLSDNQLSGSLPSFKFNMPLL 354
A+P I + +++ L NR+ L L L N L+ + + LL
Sbjct: 25 AVPVGIPAAS--QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82
Query: 355 QFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFP 414
+ LDLS N + FH L L L+L P + + L+ L L+ N
Sbjct: 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142
Query: 415 GAIPKEISNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPSFKFKMPL 473
+L L L L NR+ A L L L L N+++ P +
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202
Query: 474 LQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNF 533
L L L +N + LPT L L+ L L++N + + + P ++L+ +
Sbjct: 203 LMTLYLFANN-LSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEV 260
Query: 534 SGAIPKEI 541
++P+ +
Sbjct: 261 PCSLPQRL 268
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 83.1 bits (204), Expect = 8e-18
Identities = 75/388 (19%), Positives = 127/388 (32%), Gaps = 50/388 (12%)
Query: 128 NDFFWDHTKRNWQQLYLSKNMFYGEIP-SDIANCSYLRILVLQFNNFSGAIPKEISNLTK 186
N F D + L K + +D+ + L+ L + G + L
Sbjct: 13 NQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNN 67
Query: 187 LEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSA 246
L +++ N+L P +L +L + +++NQ++ P L +
Sbjct: 68 LTQINFSNNQLTDITPL-KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID 126
Query: 247 ELPTNVFH--------NLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGA-- 296
L + + L ++ + + L L +
Sbjct: 127 PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK 186
Query: 297 --IPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLL 354
++ LT LE L N++ L L L+ NQL ++ L
Sbjct: 187 VSDISVLAKLTNLESLIATNNQISDITPLGILT-NLDELSLNGNQLKD--IGTLASLTNL 243
Query: 355 QFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIP-------------------- 394
LDL++N++S P L L EL L N P
Sbjct: 244 TDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI 300
Query: 395 SDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLD 454
S N L L L FNN P +S+LTKL++L N++ + +L + WL
Sbjct: 301 SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VSSLANLTNINWLS 357
Query: 455 LSDNQLSGSLPSFKFKMPLLQFLDLSSN 482
NQ+S P + + L L+
Sbjct: 358 AGHNQISDLTPL--ANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 82.4 bits (202), Expect = 2e-17
Identities = 70/416 (16%), Positives = 131/416 (31%), Gaps = 52/416 (12%)
Query: 43 NLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLK 102
L+ L + ++ + ++ + ++ + + +L+NL +
Sbjct: 20 ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKS---IDGVEYLNNLTQINFS 74
Query: 103 SNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSY 162
+N P L + +L + ++ N N L D
Sbjct: 75 NNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132
Query: 163 LRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSG 222
+ +N I + + + L +L +
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD--- 189
Query: 223 SLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSY 282
S K+ L+ L ++N++S P + NL +EL L+ N A+ +
Sbjct: 190 --ISVLAKLTNLESLIATNNQISDITPLGILTNL---DELSLNGNQLKD--IGTLASLTN 242
Query: 283 LRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSG 342
L L L N S P +S LTKL +L L N++ G N+
Sbjct: 243 LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNL---ELNENQL 297
Query: 343 SLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSY 402
S N+ L +L L N +S P +L L+ L+ +NN
Sbjct: 298 EDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFANNKVSD----------- 343
Query: 403 LRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDN 458
++NLT + L +N++ P +L ++ L L+D
Sbjct: 344 ---------------VSSLANLTNINWLSAGHNQISDLTPL-ANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 80.8 bits (198), Expect = 5e-17
Identities = 79/386 (20%), Positives = 142/386 (36%), Gaps = 33/386 (8%)
Query: 158 ANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSD 217
+ VL N + + + ++L ++ L ++ +I +L L ++ S+
Sbjct: 19 TALAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIK-SIDGVEYLNNLTQINFSN 75
Query: 218 NQLSGSLP------------SFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLS 265
NQL+ P + + +L++ + P L+
Sbjct: 76 NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 135
Query: 266 NNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVG 325
SD + S L L K ++NLT LE+LD+ N++ +
Sbjct: 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLA 194
Query: 326 HLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLS 385
L L+ L ++NQ+S P + L L L+ N+L +L L +L L+
Sbjct: 195 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLA 249
Query: 386 NNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAG 445
NN P + L L L N P ++ LT L L+L N+ I
Sbjct: 250 NNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQ-LEDISPIS 304
Query: 446 HLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLS 505
+L L +L L N +S P + LQ L ++N++ +++ + NL + L
Sbjct: 305 NLKNLTYLTLYFNNISDISPVSS--LTKLQRLFFANNKV-SDVSS--LANLTNINWLSAG 359
Query: 506 NNMFYGEIPSDTPNCSYLRILVVQFN 531
+N P N + + L +
Sbjct: 360 HNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 77.3 bits (189), Expect = 6e-16
Identities = 73/377 (19%), Positives = 121/377 (32%), Gaps = 47/377 (12%)
Query: 182 SNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSS 241
+ L + K L + T+ L Q+ L + S+ ++ + L ++ S+
Sbjct: 19 TALAEKMKTVLGKTNVTDTVSQT-DLDQVTTLQADRLGIK-SIDGVEY-LNNLTQINFSN 75
Query: 242 NRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEI 301
N+L+ P NL L ++ ++NN P L +
Sbjct: 76 NQLTDITP---LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132
Query: 302 SNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSS 361
NRL+ + + + L L G+ + + L L+
Sbjct: 133 -----------NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 181
Query: 362 NRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEI 421
+ +V L LE L +NN P + L L L N +
Sbjct: 182 ISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTL 237
Query: 422 SNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFK----------- 470
++LT L LDL N++ P L +L L L NQ+S P
Sbjct: 238 ASLTNLTDLDLANNQISNLAPL-SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ 296
Query: 471 ---------MPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCS 521
+ L +L L N +S P +L L+ L+ +NN S N +
Sbjct: 297 LEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFANNKV--SDVSSLANLT 351
Query: 522 YLRILVVQFNNFSGAIP 538
+ L N S P
Sbjct: 352 NINWLSAGHNQISDLTP 368
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 73.1 bits (178), Expect = 1e-14
Identities = 41/211 (19%), Positives = 82/211 (38%), Gaps = 13/211 (6%)
Query: 9 CNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNM 68
+ I+ + + +L + ++ P L++L L L+ N ++ ++
Sbjct: 185 NKVSDISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD--IGTLASL 240
Query: 69 SSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPST-LSSCKRLRETSLSL 127
++L ++ NN + P + L+ L L L +N P L++ L L
Sbjct: 241 TNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 297
Query: 128 NDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKL 187
D +N L L N P +++ + L+ L N S ++NLT +
Sbjct: 298 EDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNI 353
Query: 188 EKLDLQYNKLQGTIPYAGHLYQLQWLDLSDN 218
L +N++ P +L ++ L L+D
Sbjct: 354 NWLSAGHNQISDLTPL-ANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 38.4 bits (88), Expect = 0.002
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 26 LNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNA 80
L + ++ S L NL+++ L N S P + N++ + + + A
Sbjct: 334 LFFANNKVS--DVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 384
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.7 bits (156), Expect = 4e-12
Identities = 38/196 (19%), Positives = 58/196 (29%), Gaps = 4/196 (2%)
Query: 26 LNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGEL 85
+N NLT +P +L L LS N A++ + L +N L
Sbjct: 15 VNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ 71
Query: 86 PPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRET-SLSLNDFFWDHTKRNWQQLYL 144
L L+ + + + L+ Q+LYL
Sbjct: 72 VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 145 SKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA 204
N P + L L L NN + ++ L L+ L LQ N L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 205 GHLYQLQWLDLSDNQL 220
+ L + L N
Sbjct: 192 FGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.4 bits (137), Expect = 8e-10
Identities = 53/212 (25%), Positives = 72/212 (33%), Gaps = 6/212 (2%)
Query: 249 PTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLE 308
P + E+ +P D IL L N + T+L
Sbjct: 2 PICEVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLT 58
Query: 309 KLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVEL 368
+L+L +R + T L V L + + SLP +P L LD+S NRL+ L
Sbjct: 59 QLNL--DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-SL 115
Query: 369 PTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLE 428
P L L+ELYL N P L L L NN ++ L L+
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Query: 429 KLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQL 460
L LQ N L L + L N
Sbjct: 176 TLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.4 bits (137), Expect = 8e-10
Identities = 47/189 (24%), Positives = 63/189 (33%), Gaps = 5/189 (2%)
Query: 152 EIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQ 211
+P D+ IL L N + T+L +L+L + + G L L
Sbjct: 24 ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLG 80
Query: 212 WLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYG 271
LDLS NQL + L + S LP L L+ELYL N
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS--LPLGALRGLGELQELYLKGNELKT 138
Query: 272 EIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQ 331
P L L L NN + ++ L L+ L LQ N L L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198
Query: 332 WLDLSDNQL 340
+ L N
Sbjct: 199 FAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.7 bits (130), Expect = 6e-09
Identities = 42/201 (20%), Positives = 59/201 (29%), Gaps = 8/201 (3%)
Query: 333 LDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGE 392
++ L+ +LP L LS N L L +L L
Sbjct: 15 VNCDKRNLT-ALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELT-- 68
Query: 393 IPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQW 452
L L L N + + L +LQ
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 453 LDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGE 512
L L N+L P P L+ L L++N TELP + + L L+ L L N Y
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSLY-T 186
Query: 513 IPSDTPNCSYLRILVVQFNNF 533
IP L + N +
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.8 bits (125), Expect = 3e-08
Identities = 52/205 (25%), Positives = 76/205 (37%), Gaps = 8/205 (3%)
Query: 234 LQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNF 293
++ L+ LP ++ + L+LS N+ Y + + L L L +
Sbjct: 12 HLEVNCDKRNLT-ALPPDLPKDT---TILHLSENLLYTFSLATLMPYTRLTQLNL--DRA 65
Query: 294 SGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPL 353
+ L L LDL +N+LQ L L L LD+S N+L+ +
Sbjct: 66 ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125
Query: 354 LQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNF 413
LQ L L N L LP + P LE+L L+NN L L+L+ N+
Sbjct: 126 LQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Query: 414 PGAIPKEISNLTKLEKLDLQYNRLQ 438
IPK L L N
Sbjct: 185 Y-TIPKGFFGSHLLPFAFLHGNPWL 208
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.0 bits (123), Expect = 6e-08
Identities = 28/177 (15%), Positives = 50/177 (28%), Gaps = 2/177 (1%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLS-FNWFSGSIPASIFNMSSLLSINFINNAL 81
T L++S L + L + L L+L + ++ + +L + +L
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSL 92
Query: 82 FGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQ 141
+ ++ L S L+ L ++
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 142 LYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQ 198
L L+ N + L L+LQ N+ IPK L L N
Sbjct: 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (84), Expect = 0.004
Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 2/77 (2%)
Query: 420 EISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDL 479
E+S + +++ L +P L LS+N L + L L+L
Sbjct: 5 EVSKVASHLEVNCDKRNLT-ALP-PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 480 SSNRLSTELPTNVFHNL 496
L+ L
Sbjct: 63 DRAELTKLQVDGTLPVL 79
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.7 bits (135), Expect = 2e-09
Identities = 44/250 (17%), Positives = 77/250 (30%), Gaps = 11/250 (4%)
Query: 189 KLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAEL 248
LDL L + + + + L F +Q +DLS++ +
Sbjct: 4 TLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVST 62
Query: 249 PTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLR--FNNFSGAIPKEISNLTK 306
+ L+ L L I + A S L L L A+ +S+ ++
Sbjct: 63 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122
Query: 307 LEKLDLQYNRLQGTILYVGHLLQLQW-------LDLSDNQLSGSLPSFKFNMPLLQFLDL 359
L++L+L + + + N L + P L LDL
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182
Query: 360 SSNRLSVELPTNVFHNLPFLEELYLSN-NMFYGEIPSDTQNCSYLRILVLKFNNFPGAIP 418
S + + F L +L+ L LS E + L+ L + G +
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242
Query: 419 KEISNLTKLE 428
L L+
Sbjct: 243 LLKEALPHLQ 252
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.6 bits (127), Expect = 2e-08
Identities = 38/271 (14%), Positives = 78/271 (28%), Gaps = 11/271 (4%)
Query: 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFG 83
L+++G NL + L + + ++ + F+ + ++ N+ +
Sbjct: 3 QTLDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEV 60
Query: 84 ELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLY 143
+ S L++L L+ I +TL+ L +LS F + +
Sbjct: 61 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120
Query: 144 LSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPY 203
+ N S+ + + A E L K +
Sbjct: 121 SRLDEL---------NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV 171
Query: 204 AGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELY 263
+ L F++ LQ L LS +P L+ L
Sbjct: 172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 231
Query: 264 LSNNMFYGEIPSDTANCSYLRILVLRFNNFS 294
+ + G + +L+I F +
Sbjct: 232 VFGIVPDGTLQLLKEALPHLQINCSHFTTIA 262
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.5 bits (119), Expect = 2e-07
Identities = 38/260 (14%), Positives = 72/260 (27%), Gaps = 35/260 (13%)
Query: 309 KLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVEL 368
LDL L + + + + L F+ +Q +DLS++ + V
Sbjct: 4 TLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVST 62
Query: 369 PTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKF--NNFPGAIPKEISNLTK 426
+ L+ L L I + S L L L A+ +S+ ++
Sbjct: 63 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122
Query: 427 LEKLDLQYNRLQGTIPYAGHLFQLQ--------------------------------WLD 454
L++L+L + + +
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182
Query: 455 LSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIP 514
L F++ LQ L LS +P L+ L + + G +
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242
Query: 515 SDTPNCSYLRILVVQFNNFS 534
+L+I F +
Sbjct: 243 LLKEALPHLQINCSHFTTIA 262
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.2 bits (113), Expect = 1e-06
Identities = 39/265 (14%), Positives = 78/265 (29%), Gaps = 34/265 (12%)
Query: 233 LLQFLDLSSNRLSAELPTNVFHN---------------------LPFLEELYLSNNMFYG 271
L Q LDL+ L ++ + ++ + LSN++
Sbjct: 1 LWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV 60
Query: 272 E-IPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQL 330
+ + CS L+ L L S I ++ + L +L+L L
Sbjct: 61 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120
Query: 331 QWLDLSDNQ---------LSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEE 381
LD + + ++ + L N +L T V +
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180
Query: 382 LYLSNNMFYGEIPSDTQNCSYLRILVLKF-NNFPGAIPKEISNLTKLEKLDLQYNRLQGT 440
+ M + + +YL+ L L + E+ + L+ L + GT
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 240
Query: 441 IPYAGHLFQLQWLDLSDNQLSGSLP 465
+ L L ++ + +
Sbjct: 241 LQLLKE--ALPHLQINCSHFTTIAR 263
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (103), Expect = 2e-05
Identities = 39/276 (14%), Positives = 78/276 (28%), Gaps = 19/276 (6%)
Query: 139 WQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQ 198
WQ L L+ + ++ + + + + + + S +++ +DL + ++
Sbjct: 2 WQTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIE 59
Query: 199 GTIP--YAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNL 256
+ +LQ L L +LS + + K L L+LS
Sbjct: 60 VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS-------GFSEFA 112
Query: 257 PFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNR 316
S N S+ + + A E L +
Sbjct: 113 LQTLLSSCSRLDEL--------NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK 164
Query: 317 LQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNL 376
+ L + L F + LQ L LS + +
Sbjct: 165 SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI 224
Query: 377 PFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNN 412
P L+ L + + G + + +L+I F
Sbjct: 225 PTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTT 260
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (102), Expect = 2e-05
Identities = 35/269 (13%), Positives = 66/269 (24%), Gaps = 17/269 (6%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIF-NMSSLLSINFINNAL 81
V A + +E + +Q +DLS + S I S L +++ L
Sbjct: 25 VIAFRCPRSFMD-QPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL 83
Query: 82 FGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQ 141
+ SNL L + + L + W
Sbjct: 84 SDPIVNTLAK-NSNLVRL---NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV 139
Query: 142 LYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTI 201
++ +++ + L
Sbjct: 140 QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD------LSDSVMLKNDCF 193
Query: 202 PYAGHLYQLQWLDLSD-NQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLE 260
L LQ L LS + ++P L+ L + L + LP L+
Sbjct: 194 QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ-LLKEALPHLQ 252
Query: 261 ELYLSNNMFYGEIPSDTANCSYLRILVLR 289
++ + F N I ++
Sbjct: 253 ---INCSHFTTIARPTIGNKKNQEIWGIK 278
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 50.5 bits (120), Expect = 2e-08
Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 4/109 (3%)
Query: 164 RILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGS 223
R+L L + + + + L + LDL +N+L+ P L L+ L SDN L
Sbjct: 1 RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58
Query: 224 LPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGE 272
Q L L +NRL + P L L L N E
Sbjct: 59 DGVANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.3 bits (117), Expect = 6e-08
Identities = 30/109 (27%), Positives = 40/109 (36%), Gaps = 4/109 (3%)
Query: 404 RILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGS 463
R+L L + + + L + LDL +NRL+ P L L+ L SDN L
Sbjct: 1 RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58
Query: 464 LPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGE 512
Q L L +NRL + P L L L N E
Sbjct: 59 DGVANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 48.9 bits (116), Expect = 7e-08
Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 4/109 (3%)
Query: 284 RILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGS 343
R+L L + + + + L + LDL +NRL+ + L L+ L SDN L
Sbjct: 1 RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58
Query: 344 LPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGE 392
Q L L +NRL + P L L L N E
Sbjct: 59 DGVANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.0 bits (111), Expect = 4e-07
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 7/121 (5%)
Query: 211 QWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFY 270
+ L L+ L+ L + ++ L+ LDLS NRL A P L LE L +
Sbjct: 1 RVLHLAHKDLT-VLCHLE-QLLLVTHLDLSHNRLRALPPA--LAALRCLE--VLQASDNA 54
Query: 271 GEIPSDTANCSYLRILVLRFNNF-SGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQ 329
E AN L+ L+L N A + + + +L L+LQ N L L +
Sbjct: 55 LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114
Query: 330 L 330
+
Sbjct: 115 M 115
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.2 bits (109), Expect = 7e-07
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 7/121 (5%)
Query: 331 QWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFY 390
+ L L+ L+ L + + L+ LDLS NRL P L LE L +
Sbjct: 1 RVLHLAHKDLT-VLCHLE-QLLLVTHLDLSHNRLRALPPA--LAALRCLE--VLQASDNA 54
Query: 391 GEIPSDTQNCSYLRILVLKFNNFPG-AIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQ 449
E N L+ L+L N A + + + +L L+LQ N L L +
Sbjct: 55 LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114
Query: 450 L 450
+
Sbjct: 115 M 115
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.3 bits (91), Expect = 2e-04
Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 6/107 (5%)
Query: 430 LDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELP 489
L L + L + + L + LDLS N+L P+ L+ L++ +
Sbjct: 3 LHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRALPPAL----AALRCLEVLQASDNALEN 57
Query: 490 TNVFHNLPFLEELYLSNNMF-YGEIPSDTPNCSYLRILVVQFNNFSG 535
+ NLP L+EL L NN +C L +L +Q N+
Sbjct: 58 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.0 bits (85), Expect = 0.001
Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 7/106 (6%)
Query: 26 LNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGEL 85
L+++ +LT + L L + LDLS N P +++L + + +
Sbjct: 3 LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNALE 56
Query: 86 PPNFCNHLSNLESLFLKSNMF-HGKIPSTLSSCKRLRETSLSLNDF 130
+ +L L+ L L +N L SC RL +L N
Sbjct: 57 NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.9 bits (117), Expect = 2e-07
Identities = 42/268 (15%), Positives = 73/268 (27%), Gaps = 36/268 (13%)
Query: 9 CNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNM 68
C+ C +T IPS+L + L +
Sbjct: 8 CSNRVFLC------------QESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGF 52
Query: 69 SSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLN 128
L I N + + + ++L L + ++ I + L N
Sbjct: 53 GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN 112
Query: 129 DFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLE 188
+ + + + + + +
Sbjct: 113 TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI--------------- 157
Query: 189 KLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSAE 247
L L N +Q A + QL L+LSDN LP+ F LD+S R+
Sbjct: 158 -LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-S 215
Query: 248 LPTNVFHNLPFLEELYLSNNMFYGEIPS 275
LP+ NL L N ++P+
Sbjct: 216 LPSYGLENLKKLRARSTYNL---KKLPT 240
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 3e-04
Identities = 44/247 (17%), Positives = 86/247 (34%), Gaps = 13/247 (5%)
Query: 274 PSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYV-GHLLQLQW 332
+CS R+ + + + + IP ++ +L +L+ L+
Sbjct: 2 HHRICHCS-NRVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEK 57
Query: 333 LDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGE 392
+++S N + + + F+ ++ + L +N
Sbjct: 58 IEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH 117
Query: 393 IPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEK---LDLQYNRLQGTIPYAGHLFQ 449
+P + S ++L+ +N + S + + L L N +Q A + Q
Sbjct: 118 LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQ 177
Query: 450 LQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNM 508
L L+LSDN LP+ F LD+S R+ LP+ NL L N
Sbjct: 178 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI-HSLPSYGLENLKKLRARSTYNL- 235
Query: 509 FYGEIPS 515
++P+
Sbjct: 236 --KKLPT 240
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (87), Expect = 0.001
Identities = 41/225 (18%), Positives = 72/225 (32%), Gaps = 12/225 (5%)
Query: 152 EIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQ 211
EIPSD+ L S LEK+++ N + I +
Sbjct: 22 EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79
Query: 212 ----WLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNN 267
++ ++N L + +F+ L L ++ + L ++ + N
Sbjct: 80 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139
Query: 268 MFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYV-GH 326
+ E S IL L N + E N L+ V
Sbjct: 140 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG 199
Query: 327 LLQLQWLDLSDNQLSGSLPSFKF-NMPLLQFLDLSSNRLSVELPT 370
LD+S ++ SLPS+ N+ L+ + + +LPT
Sbjct: 200 ASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK---KLPT 240
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (85), Expect = 0.002
Identities = 35/201 (17%), Positives = 57/201 (28%), Gaps = 5/201 (2%)
Query: 330 LQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMF 389
L +L L+ +++S N + + +VF NLP L E+ +
Sbjct: 31 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 90
Query: 390 YGEIPSDTQNCSYLRILV----LKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAG 445
I + + + P L+ D + G
Sbjct: 91 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 150
Query: 446 HLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLS 505
F+ L L+ N + L + S N ELP +VFH L +S
Sbjct: 151 LSFESVILWLNKNGIQEIHNCAFNGTQLDELNL-SDNNNLEELPNDVFHGASGPVILDIS 209
Query: 506 NNMFYGEIPSDTPNCSYLRIL 526
+ N LR
Sbjct: 210 RTRIHSLPSYGLENLKKLRAR 230
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.8 bits (83), Expect = 0.004
Identities = 36/238 (15%), Positives = 57/238 (23%), Gaps = 27/238 (11%)
Query: 84 ELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLY 143
E+P + N L S L + +S ND + L
Sbjct: 22 EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 78
Query: 144 LSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPY 203
+ + + + + + + LQ L
Sbjct: 79 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI 138
Query: 204 AGHLYQLQW----------LDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVF 253
H + L L+ N + L + +N L ELP +VF
Sbjct: 139 NIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLE-ELPNDVF 197
Query: 254 HNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLD 311
H L +S + N LR NL KL L+
Sbjct: 198 HGASGPVILDISRTRIHSLPSYGLENLKKLRAR-------------STYNLKKLPTLE 242
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 50.6 bits (119), Expect = 2e-07
Identities = 49/335 (14%), Positives = 93/335 (27%), Gaps = 24/335 (7%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSL-LSINFINNAL 81
L ++ L L+ ++P +L ++L S N + +P ++ SL + N +
Sbjct: 40 AHELELNNLGLS-SLPELPPHL---ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA-- 92
Query: 82 FGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQ 141
+ L L SN K+P +S + + + +
Sbjct: 93 --------LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEF 144
Query: 142 LYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTI 201
+ N +P + ++ + + +LQ
Sbjct: 145 IAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLP 204
Query: 202 PYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEE 261
L + L +L + ++ N+F L L
Sbjct: 205 FLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 264
Query: 262 LYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTI 321
N EI S L L + N +P L E+L +N L
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLAEVP 320
Query: 322 LYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQF 356
L+ L + N L P ++ L+
Sbjct: 321 ---ELPQNLKQLHVEYNPLR-EFPDIPESVEDLRM 351
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 49.8 bits (117), Expect = 4e-07
Identities = 49/334 (14%), Positives = 98/334 (29%), Gaps = 30/334 (8%)
Query: 185 TKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRL 244
+ +L+L L ++P L+ L S N L+ LP + L + + L
Sbjct: 38 RQAHELELNNLGLS-SLP--ELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL 93
Query: 245 SAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNL 304
S P + + + L + + + L+ L +
Sbjct: 94 SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153
Query: 305 TKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRL 364
E +L + L L L ++ + L FL
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213
Query: 365 SVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRIL----------VLKFNNFP 414
++ + + E+P + + N
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273
Query: 415 GAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLL 474
I LE+L++ N+L +P +L+ L S N L+ +P L
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLI-ELP--ALPPRLERLIASFNHLA-EVPEL---PQNL 326
Query: 475 QFLDLSSNRLST--ELPTNVFHNLPFLEELYLSN 506
+ L + N L ++P + +E+L +++
Sbjct: 327 KQLHVEYNPLREFPDIPES-------VEDLRMNS 353
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 43.3 bits (100), Expect = 5e-05
Identities = 51/328 (15%), Positives = 99/328 (30%), Gaps = 26/328 (7%)
Query: 209 QLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLS-----------AELPTNVFHNLP 257
Q L+L++ LS SLP P L+ L S N L+ + N L
Sbjct: 39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALS 94
Query: 258 FLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRL 317
L L + ++ + + ++ +N S ++ +
Sbjct: 95 DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE 154
Query: 318 QGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLP 377
+ + L + + S +L S + + L+ ++ T ++ +
Sbjct: 155 LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN 214
Query: 378 FLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRL 437
L+ L D + + L +
Sbjct: 215 LLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSN 274
Query: 438 QGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLP 497
+ L+ L++S+N+L LP+ P L+ L S N L V
Sbjct: 275 E-IRSLCDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHL-----AEVPELPQ 324
Query: 498 FLEELYLSNNMFYGEIPSDTPNCSYLRI 525
L++L++ N E P + LR+
Sbjct: 325 NLKQLHVEYNPLR-EFPDIPESVEDLRM 351
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 43.3 bits (100), Expect = 6e-05
Identities = 27/137 (19%), Positives = 45/137 (32%), Gaps = 12/137 (8%)
Query: 130 FFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEK 189
F + + S L + N S I LE+
Sbjct: 229 LNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEE 288
Query: 190 LDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELP 249
L++ NKL +P +L+ L S N L+ +P L+ L + N L E P
Sbjct: 289 LNVSNNKLI-ELP--ALPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFP 340
Query: 250 TNVFHNLPFLEELYLSN 266
+E+L +++
Sbjct: 341 ----DIPESVEDLRMNS 353
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 41.7 bits (96), Expect = 2e-04
Identities = 63/347 (18%), Positives = 93/347 (26%), Gaps = 32/347 (9%)
Query: 133 DHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDL 192
D R +L L+ +P + L LV N+ + +P+ +L L +
Sbjct: 34 DCLDRQAHELELNNLGL-SSLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNN 88
Query: 193 QYNKLQGTIP---YAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELP 249
L P Y G S L + DL +
Sbjct: 89 NLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAG 148
Query: 250 TNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEK 309
N LP L+ L ++ L + + N E+ NL L
Sbjct: 149 NNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTT 208
Query: 310 LDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELP 369
+ N L+ L L D L S F
Sbjct: 209 IYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDV----------------S 252
Query: 370 TNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEK 429
N+F L L N EI S L L + N +P L E+
Sbjct: 253 ENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL-IELPALPPRL---ER 308
Query: 430 LDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQF 476
L +N L +P L+ L + N L P + L+
Sbjct: 309 LIASFNHLA-EVP--ELPQNLKQLHVEYNPLR-EFPDIPESVEDLRM 351
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 49.3 bits (116), Expect = 3e-07
Identities = 29/196 (14%), Positives = 55/196 (28%), Gaps = 11/196 (5%)
Query: 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNAL 81
+T L+ G +T + L++L L+L N + L+
Sbjct: 42 GITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQIT------DLAPLKNLTKITELELS 93
Query: 82 FGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQ 141
L ++ +
Sbjct: 94 GNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNL 153
Query: 142 LYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTI 201
YLS + +AN S L L N S P +++L L ++ L+ N++
Sbjct: 154 QYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS 211
Query: 202 PYAGHLYQLQWLDLSD 217
P + L + L++
Sbjct: 212 PL-ANTSNLFIVTLTN 226
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 46.6 bits (109), Expect = 3e-06
Identities = 34/218 (15%), Positives = 71/218 (32%), Gaps = 13/218 (5%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALF 82
+ N+T T+ +L + TL + +I + +++L+ + +N +
Sbjct: 21 AIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQIT 76
Query: 83 GELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQL 142
L NL + + + + + +T + D T
Sbjct: 77 ------DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130
Query: 143 YLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIP 202
+ +I + + L N + ++NL+KL L NK+ P
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP 190
Query: 203 YAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLS 240
L L + L +NQ+S + L + L+
Sbjct: 191 L-ASLPNLIEVHLKNNQISD-VSPLA-NTSNLFIVTLT 225
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 43.9 bits (102), Expect = 2e-05
Identities = 35/229 (15%), Positives = 73/229 (31%), Gaps = 18/229 (7%)
Query: 278 ANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSD 337
+ + +N + + + ++L + L + TI V +L L L+L D
Sbjct: 16 PALANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKD 72
Query: 338 NQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDT 397
NQ++ P L + + + L +++ + +
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132
Query: 398 QNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSD 457
L + + +S N + +L +L L D
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLS----------IGNAQVSDLTPLANLSKLTTLKADD 182
Query: 458 NQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSN 506
N++S + +P L + L +N++S P N L + L+N
Sbjct: 183 NKISD-ISPLA-SLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTN 226
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 41.9 bits (97), Expect = 8e-05
Identities = 27/217 (12%), Positives = 62/217 (28%), Gaps = 21/217 (9%)
Query: 255 NLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQY 314
L ++ + + A+ + L + + + L L L+L+
Sbjct: 17 ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72
Query: 315 NRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFH 374
N++ + + + S + ++ L ++ +
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132
Query: 375 NL--------------PFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKE 420
L YLS + N S L L N P
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190
Query: 421 ISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSD 457
+++L L ++ L+ N++ P + L + L++
Sbjct: 191 LASLPNLIEVHLKNNQISDVSPL-ANTSNLFIVTLTN 226
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 41.2 bits (95), Expect = 1e-04
Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 14/224 (6%)
Query: 43 NLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLK 102
L++ + + + ++ + ++ + +++ + + +L+NL L LK
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGV-TTIEG--VQYLNNLIGLELK 71
Query: 103 SNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSY 162
N P + E + + + +D+ +
Sbjct: 72 DNQITDLAPLKNLTKITELEL----SGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG 127
Query: 163 LRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSG 222
L L + + + + + N + +L +L L DN++S
Sbjct: 128 LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD 187
Query: 223 SLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSN 266
+ +P L + L +N++S P N L + L+N
Sbjct: 188 -ISPLA-SLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTN 226
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 48.0 bits (112), Expect = 2e-06
Identities = 42/317 (13%), Positives = 87/317 (27%), Gaps = 17/317 (5%)
Query: 210 LQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPT---NVFHNLPFLEELYLSN 266
L+ ++ S+ + + ++ + LS N + E + LE S+
Sbjct: 10 LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68
Query: 267 NMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEK----LDLQYNRLQGTIL 322
L +L+ + + ++ ++ L+ L
Sbjct: 69 IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128
Query: 323 YVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEEL 382
+ L ++ ++ N P L+ + NRL L
Sbjct: 129 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 188
Query: 383 YLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIP 442
+ + + +L + L + + + + T L L
Sbjct: 189 HTVKMVQN---GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 245
Query: 443 YAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTE----LPTNVFHNLPF 498
L + + K + LQ L L N + + L T + +P
Sbjct: 246 RELGLNDCLLSARGAAAVVDAFS--KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 303
Query: 499 LEELYLSNNMFYGEIPS 515
L L L+ N F E
Sbjct: 304 LLFLELNGNRFSEEDDV 320
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 40.2 bits (92), Expect = 4e-04
Identities = 47/342 (13%), Positives = 88/342 (25%), Gaps = 48/342 (14%)
Query: 46 SLQTLDLSFNWFSG----SIPASIFNMSSLLSINFINNALFGELPPNFCNHL---SNLES 98
S++ L + + S+ A + S+ I N + E ++ +LE
Sbjct: 4 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63
Query: 99 LFLKSNMFHGKIPSTLSSCKRLRETSLSLN--------DFFWDHTKRNWQQLYLSKNMFY 150
+ + L + L D + T + +LSK+
Sbjct: 64 AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123
Query: 151 GEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQL 210
+ + A+ K+ N L + N+L+
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183
Query: 211 QWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFY 270
L ++ + + LL L + ++
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT-----------HLGS 232
Query: 271 GEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQL 330
+ + LR L L S + + + L
Sbjct: 233 SALAIALKSWPNLRELGLNDCLLSARGAAAVVD-----------------AFSKLENIGL 275
Query: 331 QWLDLSDNQLSGS-----LPSFKFNMPLLQFLDLSSNRLSVE 367
Q L L N++ MP L FL+L+ NR S E
Sbjct: 276 QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 317
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 39.1 bits (89), Expect = 0.001
Identities = 32/328 (9%), Positives = 87/328 (26%), Gaps = 35/328 (10%)
Query: 26 LNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSG----SIPASIFNMSSLLSINFINNAL 81
L+ ++ + L S++ + LS N + +I + L F +
Sbjct: 12 LDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD--- 68
Query: 82 FGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQ 141
++ ++ + +R + + + +
Sbjct: 69 ---------IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 119
Query: 142 LYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTI 201
++++ + + + + A + L+ ++
Sbjct: 120 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 179
Query: 202 PYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDL--------SSNRLSAELPTNVF 253
L + + N + L +L + L +
Sbjct: 180 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 239
Query: 254 HNLPFLEELYLSNNMFYGEIPSDTANC------SYLRILVLRFNNFSGAIPKEI-----S 302
+ P L EL L++ + + + L+ L L++N + +
Sbjct: 240 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 299
Query: 303 NLTKLEKLDLQYNRLQGTILYVGHLLQL 330
+ L L+L NR V + ++
Sbjct: 300 KMPDLLFLELNGNRFSEEDDVVDEIREV 327
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 39.1 bits (89), Expect = 0.001
Identities = 39/289 (13%), Positives = 73/289 (25%), Gaps = 37/289 (12%)
Query: 23 VTALNISGLNLTV----TIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFIN 78
V + +SG + + + + L+ + S + + I LL +
Sbjct: 33 VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG-RVKDEIPEALRLLLQALLK 91
Query: 79 NALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTL--------SSCKRLRETSLSLNDF 130
+ + + + H + + ++ L
Sbjct: 92 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVN 151
Query: 131 FWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKL 190
+ + +N + A L+ I E LE L
Sbjct: 152 KKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL 211
Query: 191 D--------------LQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSF------KFK 230
+ L+ L L+D LS + K +
Sbjct: 212 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE 271
Query: 231 MPLLQFLDLSSNRLSAE----LPTNVFHNLPFLEELYLSNNMFYGEIPS 275
LQ L L N + + L T + +P L L L+ N F E
Sbjct: 272 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDV 320
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 46.5 bits (109), Expect = 2e-06
Identities = 26/195 (13%), Positives = 61/195 (31%), Gaps = 11/195 (5%)
Query: 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNAL 81
N+ ++T + L+S+ + + + I + ++ + N L
Sbjct: 25 ETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKL 80
Query: 82 FGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQ 141
L+NL++L + + + ++ ++ D
Sbjct: 81 TD------IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP 134
Query: 142 LYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTI 201
S + +I ++ L + + ++ LTKL+ L L N + +
Sbjct: 135 QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DL 193
Query: 202 PYAGHLYQLQWLDLS 216
L L L+L
Sbjct: 194 RALAGLKNLDVLELF 208
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 44.6 bits (104), Expect = 9e-06
Identities = 30/216 (13%), Positives = 65/216 (30%), Gaps = 17/216 (7%)
Query: 32 NLTVTIPSELG------NLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGEL 85
+ T+T+P+ + + +L + ++ + ++S+ I N+ +
Sbjct: 5 SETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQ 62
Query: 86 PPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLS 145
+L N+ LFL N P + +
Sbjct: 63 G---IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 119
Query: 146 KNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAG 205
++ +I + + + + ++ L + I
Sbjct: 120 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLD----TLSLEDNQISDIVPLA 175
Query: 206 HLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSS 241
L +LQ L LS N +S L + + L L+L S
Sbjct: 176 GLTKLQNLYLSKNHIS-DLRALA-GLKNLDVLELFS 209
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 41.9 bits (97), Expect = 6e-05
Identities = 30/205 (14%), Positives = 58/205 (28%), Gaps = 16/205 (7%)
Query: 302 SNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSS 361
+ K +L+ + + L + + +++ + +P + L L+
Sbjct: 21 DAFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNG 77
Query: 362 NRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEI 421
N+L+ NL L L+L N L + +
Sbjct: 78 NKLT---DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP 134
Query: 422 SNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSS 481
+ + + + L+ +SD L LQ L LS
Sbjct: 135 QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTK-------LQNLYLSK 187
Query: 482 NRLSTELPTNVFHNLPFLEELYLSN 506
N +S L L+ L L +
Sbjct: 188 NHISD---LRALAGLKNLDVLELFS 209
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 41.5 bits (96), Expect = 9e-05
Identities = 29/191 (15%), Positives = 63/191 (32%), Gaps = 17/191 (8%)
Query: 279 NCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDN 338
+ L+ + + A+ + + L ++++ + ++ + + +L + L L+ N
Sbjct: 22 AFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKS-VQGIQYLPNVTKLFLNGN 78
Query: 339 QLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNL------------PFLEELYLSN 386
+L+ P FLD + + L + L +
Sbjct: 79 KLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLES 138
Query: 387 NMFYGEIPSDTQNCSYLRI-LVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAG 445
+D S L L + + ++ LTKL+ L L N + +
Sbjct: 139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DLRALA 197
Query: 446 HLFQLQWLDLS 456
L L L+L
Sbjct: 198 GLKNLDVLELF 208
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 40.4 bits (93), Expect = 2e-04
Identities = 30/191 (15%), Positives = 64/191 (33%), Gaps = 17/191 (8%)
Query: 159 NCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDN 218
+ L+ + + A+ + + L ++++ + ++ +L + L L+ N
Sbjct: 22 AFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGN 78
Query: 219 QLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNL------------PFLEELYLSN 266
+L+ P K FLD + + + L + L +
Sbjct: 79 KLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLES 138
Query: 267 NMFYGEIPSDTANCSYLRI-LVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVG 325
+D S L L + + ++ LTKL+ L L N + + +
Sbjct: 139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DLRALA 197
Query: 326 HLLQLQWLDLS 336
L L L+L
Sbjct: 198 GLKNLDVLELF 208
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.0 bits (112), Expect = 2e-06
Identities = 51/425 (12%), Positives = 92/425 (21%), Gaps = 21/425 (4%)
Query: 22 RVTALNISGLNLT----VTIPSELGNLSSLQTLDLSFNWFSGSIPASIF-----NMSSLL 72
+ + + LT I S L +L L+L N + +
Sbjct: 28 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQ 87
Query: 73 SINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFW 132
++ N L G + L L +L + + L +
Sbjct: 88 KLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ 147
Query: 133 DHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLT---KLEK 189
P + K+ KLE
Sbjct: 148 LEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES 207
Query: 190 LDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELP 249
+ + + L+ L L N+L + L L + +
Sbjct: 208 CGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI 267
Query: 250 TNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEK 309
T + ++ + + + +
Sbjct: 268 TAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS-CSFTA 326
Query: 310 LDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELP 369
+ LQ+ L D + +L+ L L+ +S
Sbjct: 327 ACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSC 386
Query: 370 ---TNVFHNLPFLEELYLSNNMFYGEIPSD-----TQNCSYLRILVLKFNNFPGAIPKEI 421
L EL LSNN Q L LVL + + +
Sbjct: 387 SSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL 446
Query: 422 SNLTK 426
L K
Sbjct: 447 QALEK 451
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.1 bits (107), Expect = 8e-06
Identities = 17/90 (18%), Positives = 26/90 (28%), Gaps = 4/90 (4%)
Query: 234 LQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGE----IPSDTANCSYLRILVLR 289
+Q LD+ LS + L + + L + I S L L LR
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 290 FNNFSGAIPKEISNLTKLEKLDLQYNRLQG 319
N + + +Q LQ
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.7 bits (106), Expect = 1e-05
Identities = 55/444 (12%), Positives = 108/444 (24%), Gaps = 23/444 (5%)
Query: 46 SLQTLDLSFNWFSGSIPASIF-NMSSLLSINFINNALFGELPPNFCNHL---SNLESLFL 101
+Q+LD+ S + A + + + + L + + L L L L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 102 KSNMFHGKIPSTL-----SSCKRLRETSLSLNDFFWDHTKRNW---QQLYLSKNMFYGEI 153
+SN + + ++++ SL + L + + +
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122
Query: 154 PSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWL 213
A L +L + E +L+ L +
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182
Query: 214 DLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEI 273
+ L L ++ L+ + + + L EL L +N
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242
Query: 274 PSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWL 333
++ LR L + + + ++ + L
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302
Query: 334 DLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEI 393
G + S+ SV L +
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE-LC 361
Query: 394 PSDTQNCSYLRILVLKFNNF----PGAIPKEISNLTKLEKLDLQYNRLQGTIPYA----- 444
Q S LR+L L + ++ + L +LDL N L
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421
Query: 445 -GHLFQLQWLDLSDNQLSGSLPSF 467
L+ L L D S +
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDR 445
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (102), Expect = 3e-05
Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 10/104 (9%)
Query: 427 LEKLDLQYNRL--QGTIPYAGHLFQLQWLDLSDNQLSG----SLPSFKFKMPLLQFLDLS 480
++ LD+Q L L Q Q + L D L+ + S P L L+L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 481 SNRLSTE----LPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNC 520
SN L + + +++L L N G +
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST 107
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (93), Expect = 3e-04
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 449 QLQWLDLSDNQLSG----SLPSFKFKMPLLQFLDLSSNRLSTE----LPTNVFHNLPFLE 500
L+ L L+D +S SL + L+ LDLS+N L L +V LE
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429
Query: 501 ELYLSNNMFYGEIPS 515
+L L + + E+
Sbjct: 430 QLVLYDIYWSEEMED 444
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 5e-04
Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 9/95 (9%)
Query: 328 LQLQWLDLSDNQLSGS-LPSFKFNMPLLQFLDLSSNRLSVELPT---NVFHNLPFLEELY 383
L +Q LD+ +LS + + Q + L L+ + P L EL
Sbjct: 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61
Query: 384 LSNNMFYGEIPSD-----TQNCSYLRILVLKFNNF 413
L +N ++ L L+
Sbjct: 62 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 5e-04
Identities = 49/444 (11%), Positives = 95/444 (21%), Gaps = 27/444 (6%)
Query: 70 SLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGK----IPSTLSSCKRLRETSL 125
+ S++ L L + + L I S L L E +L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 126 SLNDF----------FWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSG 175
N+ Q+L L G +++ + + +
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122
Query: 176 AIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQ 235
+ L LD Q + + Y S + +
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182
Query: 236 FLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSG 295
+ + L S+N + L G
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242
Query: 296 AIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQ 355
L +L + G L + + +
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302
Query: 356 FLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPG 415
+ V +++ + + L+
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA---QNRFLLELQISNNRLEDAGVRE 359
Query: 416 AIPKEISNLTKLEKLDLQYNRLQGTIPYA-----GHLFQLQWLDLSDNQLSGS-----LP 465
+ L L L + + + L+ LDLS+N L + +
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419
Query: 466 SFKFKMPLLQFLDLSSNRLSTELP 489
S + LL+ L L S E+
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEME 443
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.8 bits (88), Expect = 0.001
Identities = 12/72 (16%), Positives = 21/72 (29%), Gaps = 4/72 (5%)
Query: 474 LQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGE----IPSDTPNCSYLRILVVQ 529
+Q LD+ LS + L + + L + I S L L ++
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 530 FNNFSGAIPKEI 541
N +
Sbjct: 64 SNELGDVGVHCV 75
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (101), Expect = 1e-05
Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 2/112 (1%)
Query: 159 NCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDN 218
N R L L+ I + L + + +D N+++ + L +L+ L +++N
Sbjct: 16 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDGFPLLRRLKTLLVNNN 73
Query: 219 QLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFY 270
++ +P L L L++N L + +L L L + N
Sbjct: 74 RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 125
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (100), Expect = 2e-05
Identities = 28/155 (18%), Positives = 51/155 (32%), Gaps = 23/155 (14%)
Query: 279 NCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDN 338
N R L LR I + L + + +D N ++ + L +L+ L +++N
Sbjct: 16 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDGFPLLRRLKTLLVNNN 73
Query: 339 QLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQ 398
++ +P L L L++N L + +L L L + N
Sbjct: 74 RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN----------- 122
Query: 399 NCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQ 433
N I + ++ LD Q
Sbjct: 123 ----------PVTNKKHYRLYVIYKVPQVRVLDFQ 147
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.6 bits (99), Expect = 2e-05
Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 2/112 (1%)
Query: 399 NCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDN 458
N R L L+ P I + L + + +D N ++ + L +L+ L +++N
Sbjct: 16 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDGFPLLRRLKTLLVNNN 73
Query: 459 QLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFY 510
++ +P L L L++N L + +L L L + N
Sbjct: 74 RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 125
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 42.9 bits (99), Expect = 3e-05
Identities = 34/186 (18%), Positives = 65/186 (34%), Gaps = 9/186 (4%)
Query: 333 LDLSDNQLSGSLPSFKFNMPL-LQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYG 391
+D + L +P ++PL L L+ N L +F LP L +L L N G
Sbjct: 13 VDCTGRGLK-EIPR---DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG 68
Query: 392 EIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQ 451
P+ + S+++ L L N K L +L+ L+L N++ +P +
Sbjct: 69 IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128
Query: 452 WLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYG 511
+ + L+ L+ P+ ++ + L ++ F
Sbjct: 129 TSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSK-VRDVQIKD---LPHSEFKC 184
Query: 512 EIPSDT 517
+
Sbjct: 185 SSENSE 190
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 41.7 bits (96), Expect = 7e-05
Identities = 33/216 (15%), Positives = 56/216 (25%), Gaps = 37/216 (17%)
Query: 5 SSSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPAS 64
+ C T + C +G L IP ++ L L+ N
Sbjct: 4 AMCHCEGTTVDC------------TGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDG 48
Query: 65 IFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETS 124
+F L + + PN S+++ L L N +L
Sbjct: 49 LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQL---- 104
Query: 125 LSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNL 184
+ L L N +P + + L L +N
Sbjct: 105 ---------------KTLNLYDNQISCVMPGSFEHLNSLTSLN-LASNPFNCNCHLAWFA 148
Query: 185 TKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQL 220
L K L + P + +Q DL ++
Sbjct: 149 EWLRKKSLNGGAARCGAP--SKVRDVQIKDLPHSEF 182
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 39.0 bits (89), Expect = 6e-04
Identities = 32/185 (17%), Positives = 59/185 (31%), Gaps = 7/185 (3%)
Query: 213 LDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGE 272
+D + L +P L L+ N L +F LP L +L L N G
Sbjct: 13 VDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI 69
Query: 273 IPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQW 332
P+ S+++ L L N K L +L+ L+L N++ + L
Sbjct: 70 EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129
Query: 333 LDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGE 392
+ + L+ L+ P+ ++ + L ++ F
Sbjct: 130 SLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSK-VRDVQIKD---LPHSEFKCS 185
Query: 393 IPSDT 397
+
Sbjct: 186 SENSE 190
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.1 bits (97), Expect = 3e-05
Identities = 23/156 (14%), Positives = 44/156 (28%), Gaps = 4/156 (2%)
Query: 202 PYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEE 261
P A + L + + L L + + + L L L
Sbjct: 2 PDACCPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN 60
Query: 262 LYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQ--G 319
L + + P L L L FN ++ + L++L L N L
Sbjct: 61 LTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSC 119
Query: 320 TILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQ 355
+ ++ + + + +L +MP
Sbjct: 120 ALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNAS 155
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (84), Expect = 0.002
Identities = 12/90 (13%), Positives = 20/90 (22%), Gaps = 1/90 (1%)
Query: 449 QLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNM 508
L + + L L + + + L L L L + +
Sbjct: 9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67
Query: 509 FYGEIPSDTPNCSYLRILVVQFNNFSGAIP 538
P L L + FN
Sbjct: 68 LRFVAPDAFHFTPRLSRLNLSFNALESLSW 97
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (83), Expect = 0.002
Identities = 21/149 (14%), Positives = 39/149 (26%), Gaps = 4/149 (2%)
Query: 329 QLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNM 388
L + + L L + + + L L L L + +
Sbjct: 9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67
Query: 389 FYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQ--GTIPYAGH 446
P L L L FN ++ + L++L L N L + +
Sbjct: 68 LRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQR 126
Query: 447 LFQLQWLDLSDNQLSGSLPSFKFKMPLLQ 475
+ + + +L MP
Sbjct: 127 WEEEGLGGVPEQKLQCHGQGPLAHMPNAS 155
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 40.0 bits (92), Expect = 3e-04
Identities = 40/191 (20%), Positives = 62/191 (32%), Gaps = 11/191 (5%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALF 82
+ N+T T+ +L + TL SI + +++L INF NN L
Sbjct: 20 KMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLT 75
Query: 83 GELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQL 142
L NL L + T + N+ D
Sbjct: 76 D------ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 129
Query: 143 YLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIP 202
+ I A + L F++ K ++NLT LE+LD+ NK+ I
Sbjct: 130 LNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD-IS 188
Query: 203 YAGHLYQLQWL 213
L L+ L
Sbjct: 189 VLAKLTNLESL 199
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.6 bits (89), Expect = 5e-04
Identities = 29/119 (24%), Positives = 41/119 (34%), Gaps = 8/119 (6%)
Query: 326 HLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLS 385
+ Q LDL + L + + L+ + N+P L L LS
Sbjct: 20 YDGSQQALDLKGLRSDPDLVAQNI------DVVLNRRSSMAATLRIIEENIPELLSLNLS 73
Query: 386 NN--MFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIP 442
NN ++ S Q L+IL L N + KLE+L L N L T
Sbjct: 74 NNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR 132
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (88), Expect = 8e-04
Identities = 29/115 (25%), Positives = 40/115 (34%), Gaps = 8/115 (6%)
Query: 209 QLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNN- 267
Q LDL + L + + L+ A + N+P L L LSNN
Sbjct: 23 SQQALDLKGLRSDPDLVAQNI------DVVLNRRSSMAATLRIIEENIPELLSLNLSNNR 76
Query: 268 -MFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTI 321
++ S L+IL L N + KLE+L L N L T
Sbjct: 77 LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTF 131
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (87), Expect = 0.001
Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 3/125 (2%)
Query: 417 IPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQF 476
+ +S + L L+ + P L+ + + +L + +P L
Sbjct: 12 LKLIMSKRYDGSQQALDLKGLR-SDPDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLS 69
Query: 477 LDLSSNRLST-ELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSG 535
L+LS+NRL + +++ P L+ L LS N E D L L + N+ S
Sbjct: 70 LNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD 129
Query: 536 AIPKE 540
+
Sbjct: 130 TFRDQ 134
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (83), Expect = 0.003
Identities = 25/135 (18%), Positives = 45/135 (33%), Gaps = 5/135 (3%)
Query: 392 EIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQ 451
++ L ++ L+ + + ++ +L
Sbjct: 11 QLKLIMSKRYDGSQQALDLKGLR--SDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELL 68
Query: 452 WLDLSDNQLSG--SLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMF 509
L+LS+N+L + S K P L+ L+LS N L + LEEL+L N
Sbjct: 69 SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSL 127
Query: 510 YGEIPSDTPNCSYLR 524
+ S +R
Sbjct: 128 SDTFRDQSTYISAIR 142
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 541 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.96 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.93 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.92 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.9 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.89 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.87 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.85 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.84 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.79 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.78 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.7 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.68 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.66 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.66 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.65 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.65 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.63 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.62 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.62 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.59 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.58 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.57 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.57 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.55 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.48 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.48 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.43 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.41 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.33 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.33 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.31 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.27 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.14 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.09 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.01 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.97 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.13 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.91 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.52 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.46 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.76 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.6 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.96 E-value=4.3e-29 Score=232.58 Aligned_cols=268 Identities=31% Similarity=0.464 Sum_probs=201.5
Q ss_pred CCCCCCCcc--ccceeeeCCCCC--CeEEEEecCCccee--eeCCcccCCCCCcEecccc-cccCCccchhhhhcCCCcE
Q 036588 1 NWNTSSSVC--NWTGITCDVRTY--RVTALNISGLNLTV--TIPSELGNLSSLQTLDLSF-NWFSGSIPASIFNMSSLLS 73 (541)
Q Consensus 1 ~~~~~~~~~--~~~~~~~~~~~~--~l~~L~l~~~~i~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~ 73 (541)
+|+.+.++| .|.|++|+.... ||+.|+++++++++ .+|..++++++|++|+|++ |.+.+.+|..|.++++|++
T Consensus 26 sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~ 105 (313)
T d1ogqa_ 26 SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105 (313)
T ss_dssp TCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSE
T ss_pred CCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccch
Confidence 699999999 599999986443 89999999999986 5789999999999999997 7888899999999999999
Q ss_pred EEeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccC
Q 036588 74 INFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEI 153 (541)
Q Consensus 74 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 153 (541)
|++++|.+.+..+..+.. +++|++++++.+.+....|..+++++++++++++ ++.+.+.+
T Consensus 106 L~Ls~N~l~~~~~~~~~~-~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~-------------------~n~l~~~i 165 (313)
T d1ogqa_ 106 LYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD-------------------GNRISGAI 165 (313)
T ss_dssp EEEEEECCEEECCGGGGG-CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC-------------------SSCCEEEC
T ss_pred hhhccccccccccccccc-hhhhcccccccccccccCchhhccCcccceeecc-------------------cccccccc
Confidence 999999986666665555 9999999999999988899999999998885554 45555556
Q ss_pred CccccCCCCc-cEEEeccCcccccCCccccccCCCcEEEccCceeeeeccC-CCCcCCCCEEECCCCcccCCCCcccCCC
Q 036588 154 PSDIANCSYL-RILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPY-AGHLYQLQWLDLSDNQLSGSLPSFKFKM 231 (541)
Q Consensus 154 ~~~~~~~~~L-~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 231 (541)
|..+..+..+ +.+.+.++.+....+..+..+.. ..+++..+......+. ...+++++.+++.++.+.... ..+..+
T Consensus 166 p~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~ 243 (313)
T d1ogqa_ 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLS 243 (313)
T ss_dssp CGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCC
T ss_pred cccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 6666666554 66777777766666666665533 3566666655544433 566677777777777665333 345666
Q ss_pred CCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccc
Q 036588 232 PLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNN 292 (541)
Q Consensus 232 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 292 (541)
++|+.|++++|.+.+.+|..+ ..+++|+.|++++|++++.+|. +..+++|+.+++.+|+
T Consensus 244 ~~L~~L~Ls~N~l~g~iP~~l-~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 244 KNLNGLDLRNNRIYGTLPQGL-TQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302 (313)
T ss_dssp TTCCEEECCSSCCEECCCGGG-GGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred cccccccCccCeecccCChHH-hCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence 777777777777765666553 6677777777777777766653 4566777777777765
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.93 E-value=6.9e-24 Score=203.70 Aligned_cols=191 Identities=25% Similarity=0.261 Sum_probs=125.3
Q ss_pred ccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccC
Q 036588 324 VGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYL 403 (541)
Q Consensus 324 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 403 (541)
...+++++.++++++.+....+ ...+++|+++.+++|.++ ..+ .+..+++|+.+++.+|.+.+. ..+..+++|
T Consensus 193 ~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~L 265 (384)
T d2omza2 193 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIG--TLASLTNLTDLDLANNQISNL--APLSGLTKL 265 (384)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCG--GGGGCTTCSEEECCSSCCCCC--GGGTTCTTC
T ss_pred cccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCC-Ccc--hhhcccccchhccccCccCCC--CcccccccC
Confidence 4455555666666555443221 234566666666666654 222 344667777777777766532 236667777
Q ss_pred CeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCc
Q 036588 404 RILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNR 483 (541)
Q Consensus 404 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 483 (541)
++++++++++.... .+..++.++.+.+.+|.+.. .+.+..+++++.+++++|.+.+.. .+..+++|++|++++|+
T Consensus 266 ~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~-~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~ 340 (384)
T d2omza2 266 TELKLGANQISNIS--PLAGLTALTNLELNENQLED-ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNK 340 (384)
T ss_dssp SEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC-CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSC
T ss_pred CEeeccCcccCCCC--cccccccccccccccccccc-ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCC
Confidence 77777777765432 36667777777777777653 334666777888888888776432 36678888888888887
Q ss_pred cccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeecc
Q 036588 484 LSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFN 531 (541)
Q Consensus 484 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 531 (541)
+. .++ .+.++++|+.|++++|++.+..| +..+++|+.|+|++|
T Consensus 341 l~-~l~--~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 341 VS-DVS--SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp CC-CCG--GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred CC-CCh--hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 73 343 46778888888888888875533 778888888888775
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.92 E-value=6.3e-23 Score=196.89 Aligned_cols=145 Identities=28% Similarity=0.321 Sum_probs=83.3
Q ss_pred CCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcE
Q 036588 350 NMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEK 429 (541)
Q Consensus 350 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 429 (541)
.+++|+.+++++|.+++ .+ .+..+++|+.++++++++.+. ..+..++.++.+.++.|.+.. ...+..+++++.
T Consensus 239 ~l~~L~~L~l~~n~l~~-~~--~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~ 311 (384)
T d2omza2 239 SLTNLTDLDLANNQISN-LA--PLSGLTKLTELKLGANQISNI--SPLAGLTALTNLELNENQLED--ISPISNLKNLTY 311 (384)
T ss_dssp GCTTCSEEECCSSCCCC-CG--GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSE
T ss_pred cccccchhccccCccCC-CC--cccccccCCEeeccCcccCCC--Ccccccccccccccccccccc--ccccchhcccCe
Confidence 34445555555544432 11 133455556666555554321 234555666666666665543 224556666667
Q ss_pred EEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccc
Q 036588 430 LDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507 (541)
Q Consensus 430 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 507 (541)
+++++|++.+. +.+..+++|++|++++|.+++ ++ .+..+++|++|++++|++.+ ++ .+.++++|+.|+|++|
T Consensus 312 L~ls~n~l~~l-~~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~-l~--~l~~l~~L~~L~L~~N 383 (384)
T d2omza2 312 LTLYFNNISDI-SPVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISD-LT--PLANLTRITQLGLNDQ 383 (384)
T ss_dssp EECCSSCCSCC-GGGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCB-CG--GGTTCTTCSEEECCCE
T ss_pred EECCCCCCCCC-cccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCC-Ch--hhccCCCCCEeeCCCC
Confidence 77766666543 235566777777777776653 22 46667777777777777744 32 2566777777777765
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.90 E-value=2.1e-23 Score=193.78 Aligned_cols=250 Identities=30% Similarity=0.434 Sum_probs=187.8
Q ss_pred CCCCCcEecccccccCC--ccchhhhhcCCCcEEEeec-CccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCC
Q 036588 43 NLSSLQTLDLSFNWFSG--SIPASIFNMSSLLSINFIN-NALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKR 119 (541)
Q Consensus 43 ~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 119 (541)
.-.+++.|+++++.+.+ .+|.++.++++|++|++++ |.+.+.+|..+.+ +++|++|++++|++....+..+.++.+
T Consensus 48 ~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~-L~~L~~L~Ls~N~l~~~~~~~~~~~~~ 126 (313)
T d1ogqa_ 48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp SCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred CcEEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccccc-ccccchhhhccccccccccccccchhh
Confidence 34578999999998876 4789999999999999987 6787899999888 999999999999998888888888888
Q ss_pred CcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCC-cEEEccCceee
Q 036588 120 LRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKL-EKLDLQYNKLQ 198 (541)
Q Consensus 120 L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L-~~L~l~~~~~~ 198 (541)
|++ ++++.|.+...+|..+..++.++.+++++|.+...+|..+..+..+ +.+.++++.+.
T Consensus 127 L~~-------------------l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~ 187 (313)
T d1ogqa_ 127 LVT-------------------LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp CCE-------------------EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred hcc-------------------cccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccc
Confidence 877 5555666677788889999999999999999888888888888775 78888888887
Q ss_pred eeccC-CCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCC
Q 036588 199 GTIPY-AGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDT 277 (541)
Q Consensus 199 ~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 277 (541)
+..+. +..+ ....+++..+...+..+.....+++++.+++.++.+.+..+ .+..+++|+.|++++|++++..|..+
T Consensus 188 ~~~~~~~~~l-~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~--~~~~~~~L~~L~Ls~N~l~g~iP~~l 264 (313)
T d1ogqa_ 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp EECCGGGGGC-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG--GCCCCTTCCEEECCSSCCEECCCGGG
T ss_pred cccccccccc-ccccccccccccccccccccccccccccccccccccccccc--ccccccccccccCccCeecccCChHH
Confidence 66555 3333 44568887777776777777777788888877777654332 23556667777777766666666666
Q ss_pred cCcccccEEEecccccCCCccccccccCCccEEEeeCCc
Q 036588 278 ANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNR 316 (541)
Q Consensus 278 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 316 (541)
+.+++|++|++++|.++..+|. +.++++|+.+++.+|+
T Consensus 265 ~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 265 TQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred hCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence 6666666666666666544442 3445555555555554
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.89 E-value=7.3e-22 Score=182.56 Aligned_cols=260 Identities=22% Similarity=0.230 Sum_probs=159.7
Q ss_pred cccceeeeCCC---------CCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecC
Q 036588 9 CNWTGITCDVR---------TYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINN 79 (541)
Q Consensus 9 ~~~~~~~~~~~---------~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 79 (541)
|.|.++.|..+ .+.+++|++++++|+...+.+|.++++|++|+++++.+....|.+|.++++|++|++++|
T Consensus 10 c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n 89 (305)
T d1xkua_ 10 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89 (305)
T ss_dssp EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred ecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence 67888888542 246788888888888555567888888888888888877556777888888888888888
Q ss_pred ccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccC
Q 036588 80 ALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIAN 159 (541)
Q Consensus 80 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 159 (541)
.+ +.+|..+ .+.++.|++..+.+....+..+.....+..+.+..+... ........+..
T Consensus 90 ~l-~~l~~~~---~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~-----------------~~~~~~~~~~~ 148 (305)
T d1xkua_ 90 QL-KELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK-----------------SSGIENGAFQG 148 (305)
T ss_dssp CC-SBCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC-----------------GGGBCTTGGGG
T ss_pred cc-CcCccch---hhhhhhhhccccchhhhhhhhhhcccccccccccccccc-----------------ccCCCcccccc
Confidence 76 4566544 456777777777776555555556666666555544321 11122334555
Q ss_pred CCCccEEEeccCcccccCCccccccCCCcEEEccCceeeeeccC-CCCcCCCCEEECCCCcccCCCCcccCCCCCccEEe
Q 036588 160 CSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPY-AGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLD 238 (541)
Q Consensus 160 ~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 238 (541)
+++|+.+++.++.+. .++..+ +++|++|++.++......+. +..++.+++|++++|.+.+..+.++..+++|++|+
T Consensus 149 l~~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~ 225 (305)
T d1xkua_ 149 MKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 225 (305)
T ss_dssp CTTCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEE
T ss_pred ccccCccccccCCcc-ccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeee
Confidence 566666666665554 222222 35566666666555444332 45556666666666666555555555666666666
Q ss_pred ccCCcccCcCChhhhccCCCCcEEEecCccccccCCCC------CcCcccccEEEecccccC
Q 036588 239 LSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSD------TANCSYLRILVLRFNNFS 294 (541)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~------~~~~~~L~~L~l~~~~~~ 294 (541)
+++|.+. .++. .+..+++|+.|++++|+++...... ....++|+.|++++|.+.
T Consensus 226 L~~N~L~-~lp~-~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~ 285 (305)
T d1xkua_ 226 LNNNKLV-KVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285 (305)
T ss_dssp CCSSCCS-SCCT-TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred ccccccc-cccc-ccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence 6666553 3443 2355666666666666655433222 234567788888877654
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.87 E-value=8.3e-21 Score=175.39 Aligned_cols=265 Identities=23% Similarity=0.277 Sum_probs=154.7
Q ss_pred eEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeecc
Q 036588 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLK 102 (541)
Q Consensus 23 l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 102 (541)
.++++=++.+++ .+|..+. +++++|+|++|.++...+.+|.++++|++|++.+|.+....|..+. ++++|++|+++
T Consensus 12 ~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~-~l~~L~~L~l~ 87 (305)
T d1xkua_ 12 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA-PLVKLERLYLS 87 (305)
T ss_dssp TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECC
T ss_pred CCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhh-CCCccCEeccc
Confidence 355665666666 4455453 5677777777777733334677777777777777776433333333 37777777777
Q ss_pred ccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCccc--ccCCcc
Q 036588 103 SNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFS--GAIPKE 180 (541)
Q Consensus 103 ~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~--~~~~~~ 180 (541)
+|+++. +|..+ ... ++.|....+.+....+..+......+.++...+... ......
T Consensus 88 ~n~l~~-l~~~~--~~~-------------------l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~ 145 (305)
T d1xkua_ 88 KNQLKE-LPEKM--PKT-------------------LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 145 (305)
T ss_dssp SSCCSB-CCSSC--CTT-------------------CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG
T ss_pred CCccCc-Cccch--hhh-------------------hhhhhccccchhhhhhhhhhccccccccccccccccccCCCccc
Confidence 776663 22221 123 333555556555555555666677777777665432 334455
Q ss_pred ccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCc
Q 036588 181 ISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLE 260 (541)
Q Consensus 181 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 260 (541)
+..+++|+.+++.++.+...... .+++|+.|+++++......+..+..++.+++|.+++|.+. .++...|..+++|+
T Consensus 146 ~~~l~~L~~l~l~~n~l~~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~-~~~~~~~~~l~~L~ 222 (305)
T d1xkua_ 146 FQGMKKLSYIRIADTNITTIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLR 222 (305)
T ss_dssp GGGCTTCCEEECCSSCCCSCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC-EECTTTGGGSTTCC
T ss_pred cccccccCccccccCCccccCcc--cCCccCEEECCCCcCCCCChhHhhcccccccccccccccc-ccccccccccccce
Confidence 66777788888777766543322 3566777777776666555556666666666666666653 34444556666666
Q ss_pred EEEecCccccccCCCCCcCcccccEEEecccccCCCcccc------ccccCCccEEEeeCCcc
Q 036588 261 ELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKE------ISNLTKLEKLDLQYNRL 317 (541)
Q Consensus 261 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~------l~~l~~L~~L~l~~~~~ 317 (541)
+|++++|.+. ..|.++..+++|++|++++|+++...... ....++|+.+++++|.+
T Consensus 223 ~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~ 284 (305)
T d1xkua_ 223 ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284 (305)
T ss_dssp EEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred eeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence 6666666655 33555666666666666666555322111 22334455555555543
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.2e-20 Score=172.04 Aligned_cols=234 Identities=24% Similarity=0.222 Sum_probs=153.0
Q ss_pred ccEEEecccccCCCccccccccCCccEEEeeCCcccccccc-ccccCCCcEEeccC-ccccCCCCcccCCCCcceEEEcc
Q 036588 283 LRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILY-VGHLLQLQWLDLSD-NQLSGSLPSFKFNMPLLQFLDLS 360 (541)
Q Consensus 283 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~ 360 (541)
+++|++++|.++...+..+..+++|++++++++.+...... +.....++.+.+.. +.+....+..+.++++|++|+++
T Consensus 34 ~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~ 113 (284)
T d1ozna_ 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113 (284)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT
T ss_pred CCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecC
Confidence 44444444444433333344444444444444444332222 33344444444332 22333445556677777777777
Q ss_pred cCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccc
Q 036588 361 SNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGT 440 (541)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 440 (541)
+|.+. .+....+...++|+.+++.+|.+....+..|..+++|++|++++|.+....+.+|..+++|+.+.+++|++...
T Consensus 114 ~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i 192 (284)
T d1ozna_ 114 RCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (284)
T ss_dssp TSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred Ccccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccccc
Confidence 77765 45555666777888888888887755566777888888888888888877778888888888888888888766
Q ss_pred cCC-CcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCC
Q 036588 441 IPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPN 519 (541)
Q Consensus 441 ~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 519 (541)
.+. +..+++|+.|++++|.+....+.++..+++|++|++++|++..+.....+ ...++.+....+.+....|..+++
T Consensus 193 ~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l--~~~l~~~~~~~~~~~C~~p~~l~g 270 (284)
T d1ozna_ 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL--WAWLQKFRGSSSEVPCSLPQRLAG 270 (284)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHH--HHHHHHCCSEECCCBEEESGGGTT
T ss_pred ChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchHH--HHHHHhCcCCCCceEeCCchHHcC
Confidence 554 67788899999999988877778888999999999999988554332222 234566666666666666666654
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=7.9e-21 Score=173.35 Aligned_cols=203 Identities=21% Similarity=0.214 Sum_probs=96.4
Q ss_pred eEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeecc
Q 036588 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLK 102 (541)
Q Consensus 23 l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 102 (541)
+++|+|++++|+...+.+|.++++|++|+++++.+....+..+.++..++++....+...+.++...+.++++|++|+++
T Consensus 34 ~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~ 113 (284)
T d1ozna_ 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113 (284)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT
T ss_pred CCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecC
Confidence 44444444444433334444444444444444444433333444444444444433222233333333334444444444
Q ss_pred ccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCcccc
Q 036588 103 SNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEIS 182 (541)
Q Consensus 103 ~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~ 182 (541)
++.+....+..+..+++|+. ++++++.+..+.+..|..+++|+.|++++|.+....+..+.
T Consensus 114 ~n~~~~~~~~~~~~~~~L~~-------------------l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~ 174 (284)
T d1ozna_ 114 RCGLQELGPGLFRGLAALQY-------------------LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 174 (284)
T ss_dssp TSCCCCCCTTTTTTCTTCCE-------------------EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred Ccccccccccccchhcccch-------------------hhhccccccccChhHhccccchhhcccccCcccccchhhhc
Confidence 44443333333333333333 44444445444444555555666666666655544445555
Q ss_pred ccCCCcEEEccCceeeeeccC-CCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcc
Q 036588 183 NLTKLEKLDLQYNKLQGTIPY-AGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRL 244 (541)
Q Consensus 183 ~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 244 (541)
.+++|+++.+.+|.+....+. +..+++|++|++++|.+....+..+..+++|+++++++|.+
T Consensus 175 ~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l 237 (284)
T d1ozna_ 175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (284)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred cccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCC
Confidence 555666666655555544332 45555555555555555544444555555555555555544
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=1.9e-18 Score=155.48 Aligned_cols=175 Identities=26% Similarity=0.288 Sum_probs=90.2
Q ss_pred cceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEc
Q 036588 353 LLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDL 432 (541)
Q Consensus 353 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 432 (541)
+++.|++++|.++ .++...|.++++|++|++++|.++.. ..+..+++|++|++++|++.. .+..+..+++|+.|++
T Consensus 32 ~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~l--~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l 107 (266)
T d1p9ag_ 32 DTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDV 107 (266)
T ss_dssp TCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEE--ECCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEEC
T ss_pred CCCEEECcCCcCC-CcCHHHhhcccccccccccccccccc--ccccccccccccccccccccc-cccccccccccccccc
Confidence 4555555555554 34444444555555555555554321 123445555555555555542 2334445555555555
Q ss_pred cccccccccCC-CcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecc
Q 036588 433 QYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYG 511 (541)
Q Consensus 433 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 511 (541)
+++.+...... +..+.+++.|++++|.+....+..+..++.|+.+++++|++.+ ++...+..+++|+.|++++|.+.
T Consensus 108 ~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~L~- 185 (266)
T d1p9ag_ 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY- 185 (266)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC-CCTTTTTTCTTCCEEECCSSCCC-
T ss_pred cccccceeeccccccccccccccccccccceeccccccccccchhcccccccccc-cCccccccccccceeecccCCCc-
Confidence 55554433322 3445555555555555554444445555555556655555532 33344555555566666555555
Q ss_pred cCCCCCCCccccceEEeecccc
Q 036588 512 EIPSDTPNCSYLRILVVQFNNF 533 (541)
Q Consensus 512 ~~~~~~~~~~~L~~L~l~~~~~ 533 (541)
.+|+++..+++|+.|++++|++
T Consensus 186 ~lp~~~~~~~~L~~L~L~~Np~ 207 (266)
T d1p9ag_ 186 TIPKGFFGSHLLPFAFLHGNPW 207 (266)
T ss_dssp CCCTTTTTTCCCSEEECCSCCB
T ss_pred ccChhHCCCCCCCEEEecCCCC
Confidence 5555555555556666655543
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=6.2e-18 Score=152.04 Aligned_cols=153 Identities=34% Similarity=0.355 Sum_probs=59.9
Q ss_pred cccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEccc
Q 036588 282 YLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSS 361 (541)
Q Consensus 282 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 361 (541)
++++|++++|.+....+..+..+++|++|++++|.+.. .+.+..+++|++|++++|.+. ..+..+..+++|+.|++++
T Consensus 32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~ 109 (266)
T d1p9ag_ 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 109 (266)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCS
T ss_pred CCCEEECcCCcCCCcCHHHhhccccccccccccccccc-ccccccccccccccccccccc-ccccccccccccccccccc
Confidence 34444444444443333344444444444444444432 122233344444444444333 1222333344444444444
Q ss_pred CcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEcccccc
Q 036588 362 NRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRL 437 (541)
Q Consensus 362 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 437 (541)
+.+. .+....+..+++++.+.+.+|.+....+..+..+++++.+++++|++....+..|..+++|++|++++|++
T Consensus 110 ~~~~-~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L 184 (266)
T d1p9ag_ 110 NRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184 (266)
T ss_dssp SCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cccc-eeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCC
Confidence 4332 22222333334444444444433322223333334444444444444333333333333333433333333
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.70 E-value=1.3e-14 Score=136.45 Aligned_cols=312 Identities=25% Similarity=0.292 Sum_probs=164.7
Q ss_pred CeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeec
Q 036588 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFL 101 (541)
Q Consensus 22 ~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 101 (541)
++++|++++++++ .+|+. .++|++|++++|.++ .+|..+ .+|+.|++.+|.+ +.++. + .+.|++|++
T Consensus 39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l-~~l~~-l---p~~L~~L~L 105 (353)
T d1jl5a_ 39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNL-KALSD-L---PPLLEYLGV 105 (353)
T ss_dssp TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCC-SCCCS-C---CTTCCEEEC
T ss_pred CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhccc-chhhh-h---ccccccccc
Confidence 6889999999998 56764 578999999999998 788664 5789999999987 34442 1 357999999
Q ss_pred cccccCccCCccCCCCCCCcEEecCCCccccc-cccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCcc
Q 036588 102 KSNMFHGKIPSTLSSCKRLRETSLSLNDFFWD-HTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKE 180 (541)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 180 (541)
++|.+. .+| .++.+++|+++++.++..... .....+..+.+..+.... ...+..++.++.+.+.++..... +..
T Consensus 106 ~~n~l~-~lp-~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~~~-~~~ 180 (353)
T d1jl5a_ 106 SNNQLE-KLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLKKL-PDL 180 (353)
T ss_dssp CSSCCS-SCC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSSC-CCC
T ss_pred cccccc-ccc-chhhhccceeeccccccccccccccccccchhhccccccc--cccccccccceeccccccccccc-ccc
Confidence 999987 445 357888999977776654322 122334444443333221 12334444555555544443311 110
Q ss_pred ccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCc
Q 036588 181 ISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLE 260 (541)
Q Consensus 181 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 260 (541)
....+.+...+..+. ..+... .++.|+.+.++++... ..+ ....++.
T Consensus 181 ---~~~~~~l~~~~~~~~-~~~~~~------------------------~l~~L~~l~l~~n~~~-~~~----~~~~~l~ 227 (353)
T d1jl5a_ 181 ---PLSLESIVAGNNILE-ELPELQ------------------------NLPFLTTIYADNNLLK-TLP----DLPPSLE 227 (353)
T ss_dssp ---CTTCCEEECCSSCCS-SCCCCT------------------------TCTTCCEEECCSSCCS-SCC----SCCTTCC
T ss_pred ---ccccccccccccccc-cccccc------------------------cccccccccccccccc-ccc----ccccccc
Confidence 111222222222221 122233 3445555555444331 111 1223444
Q ss_pred EEEecCccccccCCCCCcCcccccEEEecccccCCCcccccccc-CCccEEEeeCCccccccccccccCCCcEEeccCcc
Q 036588 261 ELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNL-TKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQ 339 (541)
Q Consensus 261 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 339 (541)
.+.+..+.+.. .+ ...+.+....+..+.... +..+ ......++..+.+... ...+++|++|++++|.
T Consensus 228 ~~~~~~~~~~~-~~---~~~~~l~~~~~~~~~~~~-----l~~l~~~~~~~~~~~~~~~~~---~~~~~~L~~L~Ls~N~ 295 (353)
T d1jl5a_ 228 ALNVRDNYLTD-LP---ELPQSLTFLDVSENIFSG-----LSELPPNLYYLNASSNEIRSL---CDLPPSLEELNVSNNK 295 (353)
T ss_dssp EEECCSSCCSC-CC---CCCTTCCEEECCSSCCSE-----ESCCCTTCCEEECCSSCCSEE---CCCCTTCCEEECCSSC
T ss_pred ccccccccccc-cc---cccccccccccccccccc-----cccccchhcccccccCccccc---cccCCCCCEEECCCCc
Confidence 44444443321 11 112233333333322210 1111 2233344444433322 1234567777777776
Q ss_pred ccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcc
Q 036588 340 LSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLK 409 (541)
Q Consensus 340 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 409 (541)
+.. ++ ..+++|+.|++++|.++ .++. .+++|++|++++|++. .+|.. ..+|+.|.+.
T Consensus 296 l~~-lp---~~~~~L~~L~L~~N~L~-~l~~----~~~~L~~L~L~~N~L~-~lp~~---~~~L~~L~~~ 352 (353)
T d1jl5a_ 296 LIE-LP---ALPPRLERLIASFNHLA-EVPE----LPQNLKQLHVEYNPLR-EFPDI---PESVEDLRMN 352 (353)
T ss_dssp CSC-CC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECC
T ss_pred cCc-cc---cccCCCCEEECCCCcCC-cccc----ccCCCCEEECcCCcCC-CCCcc---ccccCeeECc
Confidence 653 22 23567777778777775 4443 3567888888888765 34332 2356666553
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.68 E-value=4.2e-14 Score=132.84 Aligned_cols=313 Identities=26% Similarity=0.286 Sum_probs=147.6
Q ss_pred cceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCC
Q 036588 138 NWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSD 217 (541)
Q Consensus 138 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 217 (541)
++++|+++++.+.. +|+. .++|++|++++|.++ .+|.. ..+|++|++.++.++.... -.+.|++|++++
T Consensus 39 ~l~~LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l~~---lp~~L~~L~L~~ 107 (353)
T d1jl5a_ 39 QAHELELNNLGLSS-LPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKALSD---LPPLLEYLGVSN 107 (353)
T ss_dssp TCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCCCS---CCTTCCEEECCS
T ss_pred CCCEEEeCCCCCCC-CCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchhhh---hccccccccccc
Confidence 46667777666653 3432 356666777666665 34433 2456666666665543221 123466666666
Q ss_pred CcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCc
Q 036588 218 NQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAI 297 (541)
Q Consensus 218 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 297 (541)
|.+. .++. ...+++|++++++++.+.. .+ .....+..+.+..+... ....+..++.++.+.+.++...
T Consensus 108 n~l~-~lp~-~~~l~~L~~L~l~~~~~~~-~~----~~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~--- 175 (353)
T d1jl5a_ 108 NQLE-KLPE-LQNSSFLKIIDVDNNSLKK-LP----DLPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLK--- 175 (353)
T ss_dssp SCCS-SCCC-CTTCTTCCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCS---
T ss_pred cccc-cccc-hhhhccceeeccccccccc-cc----cccccccchhhcccccc--ccccccccccceeccccccccc---
Confidence 6554 2232 3445556666555554421 11 11233344444332221 1222333444444444444332
Q ss_pred cccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCC
Q 036588 298 PKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLP 377 (541)
Q Consensus 298 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 377 (541)
.... .....+.+...+..+. .. .....++.|+.+.++++... ..+ ....
T Consensus 176 ---------------------~~~~---~~~~~~~l~~~~~~~~-~~-~~~~~l~~L~~l~l~~n~~~-~~~----~~~~ 224 (353)
T d1jl5a_ 176 ---------------------KLPD---LPLSLESIVAGNNILE-EL-PELQNLPFLTTIYADNNLLK-TLP----DLPP 224 (353)
T ss_dssp ---------------------SCCC---CCTTCCEEECCSSCCS-SC-CCCTTCTTCCEEECCSSCCS-SCC----SCCT
T ss_pred ---------------------cccc---cccccccccccccccc-cc-cccccccccccccccccccc-ccc----cccc
Confidence 1111 0111222222222221 11 11234555556655555432 121 1234
Q ss_pred CccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhcc-CCCcEEEccccccccccCCCcccCCcceEecc
Q 036588 378 FLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNL-TKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLS 456 (541)
Q Consensus 378 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 456 (541)
++..+.+.++.+... ....+.+...++..+.... +..+ ......++..+.+... ...+++|++|+++
T Consensus 225 ~l~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~-----l~~l~~~~~~~~~~~~~~~~~---~~~~~~L~~L~Ls 292 (353)
T d1jl5a_ 225 SLEALNVRDNYLTDL----PELPQSLTFLDVSENIFSG-----LSELPPNLYYLNASSNEIRSL---CDLPPSLEELNVS 292 (353)
T ss_dssp TCCEEECCSSCCSCC----CCCCTTCCEEECCSSCCSE-----ESCCCTTCCEEECCSSCCSEE---CCCCTTCCEEECC
T ss_pred ccccccccccccccc----ccccccccccccccccccc-----cccccchhcccccccCccccc---cccCCCCCEEECC
Confidence 455555555544311 1223344444444433221 1111 2233444444444322 2335678888888
Q ss_pred CCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEee
Q 036588 457 DNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQ 529 (541)
Q Consensus 457 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 529 (541)
+|.+. .+|. .+++|++|++++|.+ +.++. .+++|++|++++|++. .+|+. ..+|+.|.+.
T Consensus 293 ~N~l~-~lp~---~~~~L~~L~L~~N~L-~~l~~----~~~~L~~L~L~~N~L~-~lp~~---~~~L~~L~~~ 352 (353)
T d1jl5a_ 293 NNKLI-ELPA---LPPRLERLIASFNHL-AEVPE----LPQNLKQLHVEYNPLR-EFPDI---PESVEDLRMN 352 (353)
T ss_dssp SSCCS-CCCC---CCTTCCEEECCSSCC-SCCCC----CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECC
T ss_pred CCccC-cccc---ccCCCCEEECCCCcC-Ccccc----ccCCCCEEECcCCcCC-CCCcc---ccccCeeECc
Confidence 88776 3443 356788888888877 44652 2457888888888876 55543 2346666553
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.66 E-value=1.1e-15 Score=133.79 Aligned_cols=186 Identities=22% Similarity=0.237 Sum_probs=113.3
Q ss_pred ccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCC
Q 036588 41 LGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRL 120 (541)
Q Consensus 41 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 120 (541)
++.+.+|+.|++.++.++ .+ ..+.++++|++|++++|.+.+ + ..+.. +++|++++++++.++.. ..+..+++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l-~~l~~l~~L~~L~ls~n~i~~-~-~~l~~-l~~l~~l~~~~n~~~~i--~~l~~l~~L 109 (227)
T d1h6ua2 37 QADLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLELKDNQITD-L-APLKN-LTKITELELSGNPLKNV--SAIAGLQSI 109 (227)
T ss_dssp HHHHHTCCEEECTTSCCC-CC-TTGGGCTTCCEEECCSSCCCC-C-GGGTT-CCSCCEEECCSCCCSCC--GGGTTCTTC
T ss_pred HHHcCCcCEEECCCCCCC-cc-hhHhcCCCCcEeecCCceeec-c-ccccc-ccccccccccccccccc--ccccccccc
Confidence 344555566666655555 33 235555666666666555522 1 12222 55666666655555421 234555666
Q ss_pred cEEecCCCccc---cccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCcee
Q 036588 121 RETSLSLNDFF---WDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKL 197 (541)
Q Consensus 121 ~~l~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~ 197 (541)
+++.++.+... .....+.++.+.++.+.+... ..+..+++|+.|++.++.+.+. ..++.+++|++|++++|.+
T Consensus 110 ~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l 185 (227)
T d1h6ua2 110 KTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKI 185 (227)
T ss_dssp CEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred cccccccccccccchhccccchhhhhchhhhhchh--hhhccccccccccccccccccc--hhhcccccceecccCCCcc
Confidence 66665555443 223345566666666665533 2466778888888888877532 3477788888888888877
Q ss_pred eeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEecc
Q 036588 198 QGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLS 240 (541)
Q Consensus 198 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 240 (541)
++. +.+..+++|++|++++|+++... .+..+++|+.|+++
T Consensus 186 ~~l-~~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 186 SDI-SPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT 225 (227)
T ss_dssp CCC-GGGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred CCC-hhhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence 643 44777888888888888876432 36678888888875
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.66 E-value=1e-15 Score=133.95 Aligned_cols=189 Identities=24% Similarity=0.250 Sum_probs=102.9
Q ss_pred cccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccE
Q 036588 302 SNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEE 381 (541)
Q Consensus 302 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 381 (541)
..+.+|+.|.+.+|.+... .++..+++|+++++++|.+.... .+. .+++++.
T Consensus 38 ~~l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~~~~--~l~-------------------------~l~~l~~ 89 (227)
T d1h6ua2 38 ADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLA--PLK-------------------------NLTKITE 89 (227)
T ss_dssp HHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCG--GGT-------------------------TCCSCCE
T ss_pred HHcCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceeeccc--ccc-------------------------ccccccc
Confidence 4455666666666665533 34555555555555555544221 133 4444555
Q ss_pred EEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCC
Q 036588 382 LYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLS 461 (541)
Q Consensus 382 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 461 (541)
+.+.+|.++. + ..+.++++|+.++++++..... ..+...+.++.+.++++.+... ..+..+++|+.|++.+|.+.
T Consensus 90 l~~~~n~~~~-i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~ 164 (227)
T d1h6ua2 90 LELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVS 164 (227)
T ss_dssp EECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCC
T ss_pred cccccccccc-c-cccccccccccccccccccccc--chhccccchhhhhchhhhhchh-hhhccccccccccccccccc
Confidence 5554444431 1 2344555555555555544321 2344455555666655554422 22445566666666666554
Q ss_pred CCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeec
Q 036588 462 GSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQF 530 (541)
Q Consensus 462 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 530 (541)
+. ..+..+++|++|++++|++. .++ .++.+++|++|++++|++++.. .++++++|+.|++++
T Consensus 165 ~~--~~l~~l~~L~~L~Ls~n~l~-~l~--~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 165 DL--TPLANLSKLTTLKADDNKIS-DIS--PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN 226 (227)
T ss_dssp CC--GGGTTCTTCCEEECCSSCCC-CCG--GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred cc--hhhcccccceecccCCCccC-CCh--hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence 22 22556777777777777663 343 2566777777777777776432 367777777777763
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.2e-15 Score=135.13 Aligned_cols=205 Identities=20% Similarity=0.121 Sum_probs=105.8
Q ss_pred CcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccC-cccccCCCcCCcCCccCCeEEc
Q 036588 330 LQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSN-NMFYGEIPSDTQNCSYLRILVL 408 (541)
Q Consensus 330 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l 408 (541)
+++|+++++.+.......|.++++|++|++++|.+...++...|..++.++++.+.. +.+....+..|.++++|+++++
T Consensus 31 l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l 110 (242)
T d1xwdc1 31 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI 110 (242)
T ss_dssp CSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEE
T ss_pred CCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccccc
Confidence 333333333333222333444555555555555444334444455555555555443 2333333444556666666666
Q ss_pred ccCCCCCccch-hhhccCCCcEEEccccccccccCC-Ccc-cCCcceEeccCCcCCCCCCccccCCCCccEee-CCCCcc
Q 036588 409 KFNNFPGAIPK-EISNLTKLEKLDLQYNRLQGTIPY-AGH-LFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLD-LSSNRL 484 (541)
Q Consensus 409 ~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~-~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~-l~~~~~ 484 (541)
+++.+....+. .+..++.+..+...++.+...... +.. ...++.++++++.+....... ...++++++. +++|.+
T Consensus 111 ~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~-~~~~~l~~~~~l~~n~l 189 (242)
T d1xwdc1 111 SNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCA-FNGTQLDELNLSDNNNL 189 (242)
T ss_dssp ESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTT-TTTCCEEEEECTTCTTC
T ss_pred chhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccccccc-ccchhhhcccccccccc
Confidence 66655432221 223344444444444444432222 222 345667777777666433333 3445555554 445555
Q ss_pred ccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeecccccccCCC
Q 036588 485 STELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPK 539 (541)
Q Consensus 485 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~ 539 (541)
+.++...|.++++|++|++++|++....+..|+.++.|+.+++.+. ..+|+
T Consensus 190 -~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~l---~~lp~ 240 (242)
T d1xwdc1 190 -EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL---KKLPT 240 (242)
T ss_dssp -CCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEESS---SCSCC
T ss_pred -ccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCCC---CcCCC
Confidence 5566666777788888888888877554556777777777666543 35553
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=2.6e-18 Score=168.49 Aligned_cols=400 Identities=20% Similarity=0.124 Sum_probs=190.7
Q ss_pred CCCcEecccccccCCc-cchhhhhcCCCcEEEeecCccCCCCChhh---hhhcCCCcEeeccccccCccCCccCCCCCCC
Q 036588 45 SSLQTLDLSFNWFSGS-IPASIFNMSSLLSINFINNALFGELPPNF---CNHLSNLESLFLKSNMFHGKIPSTLSSCKRL 120 (541)
Q Consensus 45 ~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 120 (541)
++|++|||+++++++. +...+..+++++.|+|.+|.+.......+ ...+++|++|++++|++++.....+.+. +
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~--l 79 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG--L 79 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT--T
T ss_pred CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHH--H
Confidence 4688999999988854 34557778999999999998743222222 2347889999998887763221111110 0
Q ss_pred cEEecCCCccccccccCcceEEEecCcccccc----CCccccCCCCccEEEeccCcccccCCccccc-----cCCCcEEE
Q 036588 121 RETSLSLNDFFWDHTKRNWQQLYLSKNMFYGE----IPSDIANCSYLRILVLQFNNFSGAIPKEISN-----LTKLEKLD 191 (541)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~-----l~~L~~L~ 191 (541)
.....+|++|++++|.+.+. ++..+..+++|++|++++|.+.+.....+.. ........
T Consensus 80 ------------~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~ 147 (460)
T d1z7xw1 80 ------------QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ 147 (460)
T ss_dssp ------------CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred ------------hcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhccccccccccccc
Confidence 00112344466666655433 2344566778888888877765332222211 11122222
Q ss_pred ccCceeee-----eccCCCCcCCCCEEECCCCcccCCCC----cc-cCCCCCccEEeccCCcccCcCC---hhhhccCCC
Q 036588 192 LQYNKLQG-----TIPYAGHLYQLQWLDLSDNQLSGSLP----SF-KFKMPLLQFLDLSSNRLSAELP---TNVFHNLPF 258 (541)
Q Consensus 192 l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~----~~-~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~ 258 (541)
........ ....+...+.++.+.++++....... .. .........+....+....... ...+...+.
T Consensus 148 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 227 (460)
T d1z7xw1 148 LEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKAS 227 (460)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTT
T ss_pred ccccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhccccccccccc
Confidence 22221110 00112333455555555443221000 00 0111223344444443321110 111223344
Q ss_pred CcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccc-----cccccCCCcEE
Q 036588 259 LEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTIL-----YVGHLLQLQWL 333 (541)
Q Consensus 259 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-----~~~~~~~L~~L 333 (541)
++.+.+.++.+..... .............++.+++++|.+..... .+...+.++.+
T Consensus 228 ~~~l~~~~n~~~~~~~-------------------~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l 288 (460)
T d1z7xw1 228 LRELALGSNKLGDVGM-------------------AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKEL 288 (460)
T ss_dssp CCEEECCSSBCHHHHH-------------------HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEE
T ss_pred ccccchhhcccccccc-------------------chhhccccccccccccccccccccccccccccccccccccccccc
Confidence 4555554443221000 00011112223344444444443322111 12334444455
Q ss_pred eccCccccCCC-----CcccCCCCcceEEEcccCcCcCcCC---hhhhcCCCCccEEEccCcccccC----CCcCC-cCC
Q 036588 334 DLSDNQLSGSL-----PSFKFNMPLLQFLDLSSNRLSVELP---TNVFHNLPFLEELYLSNNMFYGE----IPSDT-QNC 400 (541)
Q Consensus 334 ~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~----~~~~~-~~~ 400 (541)
+++++.+.... .........|+.+.++++.++.... ...+...++|++|++++|++.+. +...+ ...
T Consensus 289 ~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~ 368 (460)
T d1z7xw1 289 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPG 368 (460)
T ss_dssp ECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred ccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhccc
Confidence 55444432100 0011223456666666665542211 12334566777788777776432 11122 245
Q ss_pred ccCCeEEcccCCCCCc----cchhhhccCCCcEEEccccccccccCC-----C-cccCCcceEeccCCcCCCCCCcc---
Q 036588 401 SYLRILVLKFNNFPGA----IPKEISNLTKLEKLDLQYNRLQGTIPY-----A-GHLFQLQWLDLSDNQLSGSLPSF--- 467 (541)
Q Consensus 401 ~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~-----~-~~~~~L~~L~l~~~~~~~~~~~~--- 467 (541)
+.|++|++++|.++.. ....+..+++|++|++++|++...... + .....|+.|++.++.+.+.....
T Consensus 369 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~ 448 (460)
T d1z7xw1 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA 448 (460)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHH
T ss_pred CCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHH
Confidence 6788888888877653 233456678888888888876532111 1 23346888888888776432222
Q ss_pred -ccCCCCccEe
Q 036588 468 -KFKMPLLQFL 477 (541)
Q Consensus 468 -~~~~~~L~~L 477 (541)
....|+|+.|
T Consensus 449 l~~~~~~l~~~ 459 (460)
T d1z7xw1 449 LEKDKPSLRVI 459 (460)
T ss_dssp HHHHCTTSEEE
T ss_pred HHHhCCCCEEe
Confidence 2345666655
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=3.4e-18 Score=167.66 Aligned_cols=371 Identities=20% Similarity=0.132 Sum_probs=238.5
Q ss_pred CCeEEEEecCCcceee-eCCcccCCCCCcEecccccccCCc----cchhhhhcCCCcEEEeecCccCCCCChhhhhh---
Q 036588 21 YRVTALNISGLNLTVT-IPSELGNLSSLQTLDLSFNWFSGS----IPASIFNMSSLLSINFINNALFGELPPNFCNH--- 92 (541)
Q Consensus 21 ~~l~~L~l~~~~i~~~-~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--- 92 (541)
..|++||++.+++++. ..+.+..++++|+|+|++|.++.. +...+..+++|++|++++|.+.......+++.
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~ 81 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 81 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence 3689999999999853 244567889999999999988743 45567889999999999998743222233332
Q ss_pred -cCCCcEeeccccccCcc----CCccCCCCCCCcEEecCCCccccc----------cccCcceEEEecCcccccc----C
Q 036588 93 -LSNLESLFLKSNMFHGK----IPSTLSSCKRLRETSLSLNDFFWD----------HTKRNWQQLYLSKNMFYGE----I 153 (541)
Q Consensus 93 -l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~~~~~~~~~~----------~~~~~L~~L~l~~~~~~~~----~ 153 (541)
.++|++|++++|.+++. ++..+..+++|++++++++.+... ................... .
T Consensus 82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (460)
T d1z7xw1 82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 161 (460)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence 35899999999998754 345678899999999999876411 1112223333333222211 1
Q ss_pred CccccCCCCccEEEeccCcccccCCcc----cc-ccCCCcEEEccCceeeee-----ccCCCCcCCCCEEECCCCcccC-
Q 036588 154 PSDIANCSYLRILVLQFNNFSGAIPKE----IS-NLTKLEKLDLQYNKLQGT-----IPYAGHLYQLQWLDLSDNQLSG- 222 (541)
Q Consensus 154 ~~~~~~~~~L~~L~l~~~~i~~~~~~~----l~-~l~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~- 222 (541)
...+...+.++.+.++.+...+..... +. .......+.+..+..... ...+...+.++.+.+.++....
T Consensus 162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~ 241 (460)
T d1z7xw1 162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 241 (460)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence 122345677888888877654321111 11 123566677776654321 1124556788889888876432
Q ss_pred ----CCCcccCCCCCccEEeccCCcccCcCCh---hhhccCCCCcEEEecCccccccCCCC-----CcCcccccEEEecc
Q 036588 223 ----SLPSFKFKMPLLQFLDLSSNRLSAELPT---NVFHNLPFLEELYLSNNMFYGEIPSD-----TANCSYLRILVLRF 290 (541)
Q Consensus 223 ----~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~-----~~~~~~L~~L~l~~ 290 (541)
.........+.++.+++++|.+...... ..+...+.++.+++.++.+....... ....+.|+.+.+++
T Consensus 242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~ 321 (460)
T d1z7xw1 242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 321 (460)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred ccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence 1223344567899999998876432211 22356788899999888765322111 12346799999999
Q ss_pred cccCCCccc----cccccCCccEEEeeCCccccccc-----cc-cccCCCcEEeccCccccCC----CCcccCCCCcceE
Q 036588 291 NNFSGAIPK----EISNLTKLEKLDLQYNRLQGTIL-----YV-GHLLQLQWLDLSDNQLSGS----LPSFKFNMPLLQF 356 (541)
Q Consensus 291 ~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~-----~~-~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~ 356 (541)
+.+...... .+...++|++|++++|.+..... .+ ...+.|++|++++|.++.. +...+..+++|++
T Consensus 322 ~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~ 401 (460)
T d1z7xw1 322 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 401 (460)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred cchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCE
Confidence 887654333 33456789999999998764221 12 3466799999999988642 2334556789999
Q ss_pred EEcccCcCcCcCChhh----hcCCCCccEEEccCccccc
Q 036588 357 LDLSSNRLSVELPTNV----FHNLPFLEELYLSNNMFYG 391 (541)
Q Consensus 357 L~l~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~ 391 (541)
|++++|.+++...... -.+...|+.+.+.++.+.+
T Consensus 402 L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~ 440 (460)
T d1z7xw1 402 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 440 (460)
T ss_dssp EECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred EECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence 9999998864332222 2234579999999988753
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=4.3e-17 Score=147.58 Aligned_cols=250 Identities=20% Similarity=0.148 Sum_probs=163.0
Q ss_pred cEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccC-CCCcccCCCCcceEEEcccC
Q 036588 284 RILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSG-SLPSFKFNMPLLQFLDLSSN 362 (541)
Q Consensus 284 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~ 362 (541)
++++++++.+.......+.. .....+.+................+|++|++++|.+.. .+...+..+++|++|.+++|
T Consensus 3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~ 81 (284)
T d2astb2 3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 81 (284)
T ss_dssp SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC
T ss_pred CEEECCCCCCCchHHHHHHh-ccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccccc
Confidence 46788877654222221211 23445555555444333344556789999999987753 34455778999999999999
Q ss_pred cCcCcCChhhhcCCCCccEEEccCcc-cccC-CCcCCcCCccCCeEEcccCC-CCCc-cchhhhc-cCCCcEEEcccccc
Q 036588 363 RLSVELPTNVFHNLPFLEELYLSNNM-FYGE-IPSDTQNCSYLRILVLKFNN-FPGA-IPKEISN-LTKLEKLDLQYNRL 437 (541)
Q Consensus 363 ~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~L~l~~~~-~~~~-~~~~l~~-~~~L~~L~l~~~~~ 437 (541)
.+++.... .+..+++|++|++++|. +++. +......+++|++|++++|. +++. ....+.. ++.|+.|++++|..
T Consensus 82 ~l~~~~~~-~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 160 (284)
T d2astb2 82 RLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 160 (284)
T ss_dssp BCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred CCCcHHHH-HHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccc
Confidence 88644443 34578999999999975 3321 11224578999999999974 3322 2223333 58899999998742
Q ss_pred --cc--ccCCCcccCCcceEeccCCc-CCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceeccc
Q 036588 438 --QG--TIPYAGHLFQLQWLDLSDNQ-LSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGE 512 (541)
Q Consensus 438 --~~--~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 512 (541)
.. .......+++|+.|++++|. +++.....+..+++|++|++++|...+......++.+++|+.|++++| +.+.
T Consensus 161 ~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~ 239 (284)
T d2astb2 161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG 239 (284)
T ss_dssp GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT
T ss_pred ccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHH
Confidence 21 11124568999999999974 565666778889999999999986434333355778899999999998 4333
Q ss_pred CCCCCCCc-cccceEEeecccccccCCC
Q 036588 513 IPSDTPNC-SYLRILVVQFNNFSGAIPK 539 (541)
Q Consensus 513 ~~~~~~~~-~~L~~L~l~~~~~~~~~p~ 539 (541)
++..+ ..+..|.+..+++++..|.
T Consensus 240 ---~l~~l~~~lp~L~i~~~~ls~~~~~ 264 (284)
T d2astb2 240 ---TLQLLKEALPHLQINCSHFTTIARP 264 (284)
T ss_dssp ---CHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred ---HHHHHHHhCccccccCccCCCCCCC
Confidence 32221 2344455677777765554
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2.3e-15 Score=133.31 Aligned_cols=219 Identities=17% Similarity=0.111 Sum_probs=135.3
Q ss_pred EEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccc
Q 036588 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKS 103 (541)
Q Consensus 24 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 103 (541)
++++.++.+++ .+|+.+- +++++|++++|.++...+.+|.++++|++|++++|.+...++...+.++++++++.+..
T Consensus 11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~ 87 (242)
T d1xwdc1 11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87 (242)
T ss_dssp SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence 45666677777 4555442 57888888888887444456888888888888888876656666666688888888754
Q ss_pred -cccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCC-ccccCCCCccEEEeccCcccccCCccc
Q 036588 104 -NMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIP-SDIANCSYLRILVLQFNNFSGAIPKEI 181 (541)
Q Consensus 104 -~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~~~~~~l 181 (541)
+.+....+..|..+++|+++++.++. +....+ ..+..++.+..+...++.+....+..+
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~-------------------l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~ 148 (242)
T d1xwdc1 88 ANNLLYINPEAFQNLPNLQYLLISNTG-------------------IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 148 (242)
T ss_dssp CTTCCEECTTSEECCTTCCEEEEESCC-------------------CCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSS
T ss_pred cccccccccccccccccccccccchhh-------------------hccccccccccccccccccccccccccccccccc
Confidence 55666666777788888775555443 322211 122333444444445545544444444
Q ss_pred cccC-CCcEEEccCceeeeeccCCCCcCCCCEEE-CCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCC
Q 036588 182 SNLT-KLEKLDLQYNKLQGTIPYAGHLYQLQWLD-LSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFL 259 (541)
Q Consensus 182 ~~l~-~L~~L~l~~~~~~~~~~~~~~~~~L~~L~-l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 259 (541)
..++ .++.|++.++.+...........+++.+. ++++.++...+..+..+++|++|++++|.+. .++...|.++++|
T Consensus 149 ~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L 227 (242)
T d1xwdc1 149 VGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKL 227 (242)
T ss_dssp TTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTCCEE
T ss_pred ccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCCccc
Confidence 4443 56667777776665555544455555554 4555565444455667778888888777764 5555555666666
Q ss_pred cEEEec
Q 036588 260 EELYLS 265 (541)
Q Consensus 260 ~~L~l~ 265 (541)
+.+++.
T Consensus 228 ~~l~~~ 233 (242)
T d1xwdc1 228 RARSTY 233 (242)
T ss_dssp ESSSEE
T ss_pred ccCcCC
Confidence 555443
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=4.2e-16 Score=140.97 Aligned_cols=184 Identities=20% Similarity=0.163 Sum_probs=94.0
Q ss_pred CCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccc-cCCCc-cccccccCCcc
Q 036588 231 MPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNN-FSGAI-PKEISNLTKLE 308 (541)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~-~~~l~~l~~L~ 308 (541)
..+|++|+++++.+.......++..+++|++|++.++.+.+.....+..+++|++|++++|. +++.. ......+++|+
T Consensus 45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~ 124 (284)
T d2astb2 45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 124 (284)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence 34566666666655433344456666777777777766555445555566667777776642 33211 11234456666
Q ss_pred EEEeeCCcc-ccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCc--CcCcCChhhhcCCCCccEEEcc
Q 036588 309 KLDLQYNRL-QGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNR--LSVELPTNVFHNLPFLEELYLS 385 (541)
Q Consensus 309 ~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~ 385 (541)
+|++++|.. ...... ......+++|+.|.++++. +++........++|+|++|++.
T Consensus 125 ~L~ls~c~~~~~~~~~---------------------~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~ 183 (284)
T d2astb2 125 ELNLSWCFDFTEKHVQ---------------------VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 183 (284)
T ss_dssp EEECCCCTTCCHHHHH---------------------HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred ccccccccccccccch---------------------hhhcccccccchhhhcccccccccccccccccccccccccccc
Confidence 666666532 111000 0000123344444444431 2222223334456666666666
Q ss_pred Ccc-cccCCCcCCcCCccCCeEEcccC-CCCCccchhhhccCCCcEEEcccc
Q 036588 386 NNM-FYGEIPSDTQNCSYLRILVLKFN-NFPGAIPKEISNLTKLEKLDLQYN 435 (541)
Q Consensus 386 ~~~-~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~ 435 (541)
+|. +++.....+..+++|++|++++| .+++.....++++++|+.|++++|
T Consensus 184 ~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 184 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred cccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 654 33333344555666666666665 344444445556666666666665
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.58 E-value=1.5e-14 Score=123.13 Aligned_cols=160 Identities=28% Similarity=0.382 Sum_probs=92.6
Q ss_pred CCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEee
Q 036588 21 YRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLF 100 (541)
Q Consensus 21 ~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 100 (541)
.++++|++++++++. + +.++.+++|++|++++|.+++..+ +.++++|++|++++|.+ ..++ .+.. +++|+.|+
T Consensus 40 ~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~-~~~~-~l~~-l~~L~~L~ 112 (199)
T d2omxa2 40 DQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI-ADIT-PLAN-LTNLTGLT 112 (199)
T ss_dssp TTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC-CCCG-GGTT-CTTCSEEE
T ss_pred cCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCccccccccccccc-cccc-cccc-cccccccc
Confidence 356666666666653 2 235666666666666666653222 56666666666666655 2222 2332 66666666
Q ss_pred ccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCcc
Q 036588 101 LKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKE 180 (541)
Q Consensus 101 l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 180 (541)
++++..... ..+.++++|+. +++++|.+... ..+..+++|+.|++.+|.+.+. ..
T Consensus 113 l~~~~~~~~--~~~~~l~~L~~-------------------L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l--~~ 167 (199)
T d2omxa2 113 LFNNQITDI--DPLKNLTNLNR-------------------LELSSNTISDI--SALSGLTSLQQLNFSSNQVTDL--KP 167 (199)
T ss_dssp CCSSCCCCC--GGGTTCTTCSE-------------------EECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GG
T ss_pred ccccccccc--cccchhhhhHH-------------------hhhhhhhhccc--ccccccccccccccccccccCC--cc
Confidence 665554421 23444555555 55555555432 2466777777777777776632 34
Q ss_pred ccccCCCcEEEccCceeeeeccCCCCcCCCCEE
Q 036588 181 ISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWL 213 (541)
Q Consensus 181 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 213 (541)
++.+++|++|++++|.+++. +.+..+++|+.|
T Consensus 168 l~~l~~L~~L~ls~N~i~~i-~~l~~L~~L~~L 199 (199)
T d2omxa2 168 LANLTTLERLDISSNKVSDI-SVLAKLTNLESL 199 (199)
T ss_dssp GTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEE
T ss_pred ccCCCCCCEEECCCCCCCCC-ccccCCCCCCcC
Confidence 67777777777777776643 345666677654
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.57 E-value=1.4e-14 Score=124.44 Aligned_cols=162 Identities=25% Similarity=0.292 Sum_probs=92.0
Q ss_pred CCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEE
Q 036588 44 LSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRET 123 (541)
Q Consensus 44 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 123 (541)
+.+|+.|+++++.++ .++ .+..+++|++|++++|.+. .++ .+.. +++|++|++++|+++. ++ .+..+++|+.+
T Consensus 45 L~~L~~L~l~~~~i~-~l~-~l~~l~~L~~L~L~~n~i~-~l~-~~~~-l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L 117 (210)
T d1h6ta2 45 LNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLT-DIK-PLAN-LKNLGWLFLDENKVKD-LS-SLKDLKKLKSL 117 (210)
T ss_dssp HHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCG-GGTT-CTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred hcCccEEECcCCCCC-Cch-hHhhCCCCCEEeCCCcccc-Ccc-cccc-Cccccccccccccccc-cc-ccccccccccc
Confidence 444555555555544 222 2445555555555555542 222 2222 5555555555555542 22 34455555555
Q ss_pred ecCCCccc---cccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeee
Q 036588 124 SLSLNDFF---WDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGT 200 (541)
Q Consensus 124 ~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ 200 (541)
+++++... .....+.++.++++++.+.+. ..+..+++|+.+++++|.+.+ + ..++.+++|++|++++|.+++.
T Consensus 118 ~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~-i-~~l~~l~~L~~L~Ls~N~i~~l 193 (210)
T d1h6ta2 118 SLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-I-VPLAGLTKLQNLYLSKNHISDL 193 (210)
T ss_dssp ECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCBC
T ss_pred cccccccccccccccccccccccccccccccc--ccccccccccccccccccccc-c-ccccCCCCCCEEECCCCCCCCC
Confidence 55554433 233344556666666666532 346677888888888887763 2 3477788888888888877643
Q ss_pred ccCCCCcCCCCEEECCC
Q 036588 201 IPYAGHLYQLQWLDLSD 217 (541)
Q Consensus 201 ~~~~~~~~~L~~L~l~~ 217 (541)
+.+..+++|++|++++
T Consensus 194 -~~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 194 -RALAGLKNLDVLELFS 209 (210)
T ss_dssp -GGGTTCTTCSEEEEEE
T ss_pred -hhhcCCCCCCEEEccC
Confidence 4577788888887753
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.57 E-value=2.6e-14 Score=122.83 Aligned_cols=144 Identities=26% Similarity=0.324 Sum_probs=83.4
Q ss_pred CCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEe
Q 036588 375 NLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLD 454 (541)
Q Consensus 375 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 454 (541)
.+++|++|++++|++.+. ..+..+++|++|++++|+++.. ..+..+++|+.+++++|... ..+.+..+++++.++
T Consensus 66 ~l~~L~~L~L~~n~i~~l--~~~~~l~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~l~~~~~~-~~~~l~~l~~l~~l~ 140 (210)
T d1h6ta2 66 YLPNVTKLFLNGNKLTDI--KPLANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGIS-DINGLVHLPQLESLY 140 (210)
T ss_dssp GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCC-CCGGGGGCTTCCEEE
T ss_pred hCCCCCEEeCCCccccCc--cccccCcccccccccccccccc--cccccccccccccccccccc-ccccccccccccccc
Confidence 455555555555554421 1244555666666666655432 13555666666666666554 223345556666666
Q ss_pred ccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeec
Q 036588 455 LSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQF 530 (541)
Q Consensus 455 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 530 (541)
++++.+.+ ...+..+++|+++++++|++.+ ++ .+.++++|++|++++|.+.+ ++ .++.+++|+.|++++
T Consensus 141 ~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~--~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 141 LGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV--PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp CCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred cccccccc--cccccccccccccccccccccc-cc--cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence 66666543 2234556777777777777633 32 25667777777777777763 33 577777777777753
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.55 E-value=6.3e-14 Score=119.29 Aligned_cols=74 Identities=34% Similarity=0.459 Sum_probs=31.9
Q ss_pred hccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccce
Q 036588 422 SNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEE 501 (541)
Q Consensus 422 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 501 (541)
..+++|+.+++++|++. ..+.+..+++|+.|++.+|.+++. ..+.++++|++|++++|++ +.++ .++.+++|++
T Consensus 125 ~~l~~L~~L~l~~n~l~-~~~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i-~~i~--~l~~L~~L~~ 198 (199)
T d2omxa2 125 KNLTNLNRLELSSNTIS-DISALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKV-SDIS--VLAKLTNLES 198 (199)
T ss_dssp TTCTTCSEEECCSSCCC-CCGGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC-CCCG--GGGGCTTCSE
T ss_pred chhhhhHHhhhhhhhhc-ccccccccccccccccccccccCC--ccccCCCCCCEEECCCCCC-CCCc--cccCCCCCCc
Confidence 33444444444444433 122233444444444444444321 1244555555555555554 2232 2444455544
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.48 E-value=2.2e-14 Score=121.40 Aligned_cols=127 Identities=20% Similarity=0.240 Sum_probs=84.9
Q ss_pred EEEecCCcceeeeCCcccCCCCCcEecccccccCCc-cchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccc
Q 036588 25 ALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGS-IPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKS 103 (541)
Q Consensus 25 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 103 (541)
+++.++.+++ .+|..+. +++++|+|++|.++.. .+..|.++++|++|++++|.+. .++...+.++++|++|++++
T Consensus 12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~-~~~~~~~~~~~~L~~L~Ls~ 87 (192)
T d1w8aa_ 12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCS
T ss_pred EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccc-cccccccccccccceeeecc
Confidence 4555566666 4555442 6788888888888643 3555677888888888887774 33444444478888888888
Q ss_pred cccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCccc
Q 036588 104 NMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFS 174 (541)
Q Consensus 104 ~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 174 (541)
|++....+..|.++++|++ |++++|.+..+.+..|..+++|+++++.+|.+.
T Consensus 88 N~l~~l~~~~F~~l~~L~~-------------------L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 88 NKIKEISNKMFLGLHQLKT-------------------LNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCE-------------------EECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred ccccccCHHHHhCCCcccc-------------------cccCCccccccCHHHhcCCcccccccccccccc
Confidence 8777666666777776666 555556666556666777777777777776654
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.48 E-value=5.7e-14 Score=118.78 Aligned_cols=170 Identities=24% Similarity=0.265 Sum_probs=99.8
Q ss_pred EEEcccCcCcCcCChhhhcCCCCccEEEccCccccc-CCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccc
Q 036588 356 FLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYG-EIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQY 434 (541)
Q Consensus 356 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 434 (541)
.++.+++.++ .+|..+ .+++++|++++|+++. .....|..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 12 ~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~ 87 (192)
T d1w8aa_ 12 TVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp EEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred EEEEeCCCcC-ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence 3444444443 344332 1455666666666543 2234456666666666666666666666666666666666666
Q ss_pred cccccccCC-CcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccC
Q 036588 435 NRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEI 513 (541)
Q Consensus 435 ~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 513 (541)
|++....+. +..+++|+.|+|++|.+....+.++..+++|++|++++|++........+. ..++.+.+..+.+....
T Consensus 88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~~ 165 (192)
T d1w8aa_ 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGA 165 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCS
T ss_pred ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeEeCC
Confidence 666654444 556677777777777776666666777778888888877774433222222 23556666666666666
Q ss_pred CCCCCCccccceEEeeccccc
Q 036588 514 PSDTPNCSYLRILVVQFNNFS 534 (541)
Q Consensus 514 ~~~~~~~~~L~~L~l~~~~~~ 534 (541)
|..++. ++.++++.+++.
T Consensus 166 p~~l~~---~~l~~L~~n~l~ 183 (192)
T d1w8aa_ 166 PSKVRD---VQIKDLPHSEFK 183 (192)
T ss_dssp STTTTT---SBGGGSCTTTCC
T ss_pred ChhhcC---CEeeecCHhhCc
Confidence 655443 445566666553
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.43 E-value=3.1e-13 Score=104.43 Aligned_cols=101 Identities=28% Similarity=0.380 Sum_probs=83.3
Q ss_pred EEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccc
Q 036588 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKS 103 (541)
Q Consensus 24 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 103 (541)
|+|++++++++ .++ .++++++|++|++++|.++ .+|..+..+++|++|++++|.+. .+| .+.. +++|++|++++
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~-l~~L~~L~l~~ 74 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVAN-LPRLQELLLCN 74 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTT-CSSCCEEECCS
T ss_pred CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-cccc-ccccCeEECCC
Confidence 68999999999 445 4899999999999999998 78888999999999999999983 454 4555 99999999999
Q ss_pred cccCccC-CccCCCCCCCcEEecCCCcc
Q 036588 104 NMFHGKI-PSTLSSCKRLRETSLSLNDF 130 (541)
Q Consensus 104 ~~~~~~~-~~~~~~l~~L~~l~~~~~~~ 130 (541)
|++.... ...+..+++|++++++++++
T Consensus 75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i 102 (124)
T d1dcea3 75 NRLQQSAAIQPLVSCPRLVLLNLQGNSL 102 (124)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred CccCCCCCchhhcCCCCCCEEECCCCcC
Confidence 9998543 24677888888866665554
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1.2e-13 Score=112.58 Aligned_cols=127 Identities=20% Similarity=0.147 Sum_probs=70.2
Q ss_pred CcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccE
Q 036588 397 TQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQF 476 (541)
Q Consensus 397 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 476 (541)
+.++..+++|++++|+++.. +..+..+++|+.|++++|++... +.+..+++|+.|++++|.+....+..+..+++|++
T Consensus 14 ~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~ 91 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 91 (162)
T ss_dssp EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred ccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc-CCcccCcchhhhhcccccccCCCcccccccccccc
Confidence 34445556666666655543 33344556666666666665532 34555666666666666665444444455666666
Q ss_pred eeCCCCccccccCc-ccccCCcccceeeeccceecccCCC----CCCCccccceEE
Q 036588 477 LDLSSNRLSTELPT-NVFHNLPFLEELYLSNNMFYGEIPS----DTPNCSYLRILV 527 (541)
Q Consensus 477 L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~ 527 (541)
|++++|++.+ ++. ..+..+++|+.+++++|++.+. +. .++.+|+|+.||
T Consensus 92 L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~~~-~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 92 LILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp EECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEET
T ss_pred ceeccccccc-cccccccccccccchhhcCCCccccc-cchHHHHHHHCCCcCeeC
Confidence 6666666532 321 3455566666666666666522 22 245566666665
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.33 E-value=8.2e-14 Score=130.02 Aligned_cols=248 Identities=21% Similarity=0.175 Sum_probs=110.5
Q ss_pred CCCcCcccccEEEecccccCCC----ccccccccCCccEEEeeCCcccccc-----------ccccccCCCcEEeccCcc
Q 036588 275 SDTANCSYLRILVLRFNNFSGA----IPKEISNLTKLEKLDLQYNRLQGTI-----------LYVGHLLQLQWLDLSDNQ 339 (541)
Q Consensus 275 ~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~-----------~~~~~~~~L~~L~l~~~~ 339 (541)
..+.....++.|++++|.+... +...+...++|+.++++++...... ..+..+++|+.|++++|.
T Consensus 25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~ 104 (344)
T d2ca6a1 25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 104 (344)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence 3345567788888887766533 2234556677778877766432111 113345556666666555
Q ss_pred ccCC----CCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCC
Q 036588 340 LSGS----LPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPG 415 (541)
Q Consensus 340 ~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 415 (541)
+... +...+...++|+.|.+++|.+...........+ ..+ .........+.|+.+.++++.+..
T Consensus 105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l---~~~---------~~~~~~~~~~~L~~l~l~~n~i~~ 172 (344)
T d2ca6a1 105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARAL---QEL---------AVNKKAKNAPPLRSIICGRNRLEN 172 (344)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHH---HHH---------HHHHHHHTCCCCCEEECCSSCCTG
T ss_pred cccccccchhhhhcccccchheecccccccccccccccccc---ccc---------ccccccccCcccceeecccccccc
Confidence 4421 111222345555555555544211000000000 000 000001233445555555554443
Q ss_pred ccc----hhhhccCCCcEEEccccccccc------cCCCcccCCcceEeccCCcCCCC----CCccccCCCCccEeeCCC
Q 036588 416 AIP----KEISNLTKLEKLDLQYNRLQGT------IPYAGHLFQLQWLDLSDNQLSGS----LPSFKFKMPLLQFLDLSS 481 (541)
Q Consensus 416 ~~~----~~l~~~~~L~~L~l~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~ 481 (541)
... ..+..++.|++|++++|.+... ...+...++|+.|++++|.+.+. +...+..+++|++|++++
T Consensus 173 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~ 252 (344)
T d2ca6a1 173 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 252 (344)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred cccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhc
Confidence 221 1233455555555555554321 11234455555566655554321 222344555666666666
Q ss_pred CccccccCc---cccc--CCcccceeeeccceeccc----CCCCCC-CccccceEEeeccccc
Q 036588 482 NRLSTELPT---NVFH--NLPFLEELYLSNNMFYGE----IPSDTP-NCSYLRILVVQFNNFS 534 (541)
Q Consensus 482 ~~~~~~~~~---~~~~--~~~~L~~L~l~~~~~~~~----~~~~~~-~~~~L~~L~l~~~~~~ 534 (541)
|.+.+.... ..+. ..+.|++|++++|.+.+. +...+. .++.|+.|++++|.+.
T Consensus 253 n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~ 315 (344)
T d2ca6a1 253 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315 (344)
T ss_dssp CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred CccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence 655321110 1111 124466666666655432 112221 3455666666666553
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=1.3e-12 Score=106.21 Aligned_cols=111 Identities=20% Similarity=0.128 Sum_probs=60.1
Q ss_pred ccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccE
Q 036588 157 IANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQF 236 (541)
Q Consensus 157 ~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 236 (541)
+.++.++++|++++|.|.. ++..+..+++|+.|++++|.+... +.+..+++|+.|++++|.+....+..+..+++|++
T Consensus 14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~ 91 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 91 (162)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc-CCcccCcchhhhhcccccccCCCcccccccccccc
Confidence 4555666777777776663 344445566677777776666543 34556666666666666655333333344555555
Q ss_pred EeccCCcccCcCChhhhccCCCCcEEEecCccc
Q 036588 237 LDLSSNRLSAELPTNVFHNLPFLEELYLSNNMF 269 (541)
Q Consensus 237 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 269 (541)
|++++|.+........+..+++|+.+++.+|.+
T Consensus 92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i 124 (162)
T d1a9na_ 92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPV 124 (162)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred ceeccccccccccccccccccccchhhcCCCcc
Confidence 555555543211112334445555555555444
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.31 E-value=2.7e-12 Score=99.02 Aligned_cols=102 Identities=29% Similarity=0.308 Sum_probs=46.5
Q ss_pred eEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCcc
Q 036588 405 ILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRL 484 (541)
Q Consensus 405 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 484 (541)
.|++++|.++... .+..+++|++|++++|++....+.+..+++|+.|++++|.+.. ++ .++.+++|++|++++|++
T Consensus 2 ~L~Ls~n~l~~l~--~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i 77 (124)
T d1dcea3 2 VLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRL 77 (124)
T ss_dssp EEECTTSCCSSCC--CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCC
T ss_pred EEEcCCCCCCCCc--ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCcc
Confidence 3444444444221 2444444445555444444332234444455555555554442 22 244555555555555555
Q ss_pred ccccCcccccCCcccceeeeccceec
Q 036588 485 STELPTNVFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 485 ~~~~~~~~~~~~~~L~~L~l~~~~~~ 510 (541)
.+.-....+..+++|+.+++++|++.
T Consensus 78 ~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 78 QQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp CSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCCCchhhcCCCCCCEEECCCCcCC
Confidence 22111133445555555555555554
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.27 E-value=2.9e-13 Score=126.24 Aligned_cols=112 Identities=25% Similarity=0.174 Sum_probs=53.5
Q ss_pred ccCCCcEEEccCceeeee------ccCCCCcCCCCEEECCCCcccCC----CCcccCCCCCccEEeccCCcccCcCChhh
Q 036588 183 NLTKLEKLDLQYNKLQGT------IPYAGHLYQLQWLDLSDNQLSGS----LPSFKFKMPLLQFLDLSSNRLSAELPTNV 252 (541)
Q Consensus 183 ~l~~L~~L~l~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 252 (541)
.++.|++|++++|.+... ...+...++|+.|++++|.+... +...+..+++|++|++++|.+.+.....+
T Consensus 184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l 263 (344)
T d2ca6a1 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 263 (344)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHH
Confidence 344555555555544321 11234455555555555544321 22234445666666666665532211111
Q ss_pred ---hc--cCCCCcEEEecCccccccC----CCCCc-CcccccEEEecccccC
Q 036588 253 ---FH--NLPFLEELYLSNNMFYGEI----PSDTA-NCSYLRILVLRFNNFS 294 (541)
Q Consensus 253 ---~~--~~~~L~~L~l~~~~~~~~~----~~~~~-~~~~L~~L~l~~~~~~ 294 (541)
+. ..+.|++|++++|.+.... ...+. .+++|++|++++|.+.
T Consensus 264 ~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~ 315 (344)
T d2ca6a1 264 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315 (344)
T ss_dssp HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence 11 1245666777666654321 11121 3466777777777665
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.14 E-value=9.8e-13 Score=111.03 Aligned_cols=113 Identities=22% Similarity=0.216 Sum_probs=58.6
Q ss_pred eCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCC
Q 036588 37 IPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSS 116 (541)
Q Consensus 37 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 116 (541)
++..++.+++|++|++++|.++ .++ .+.++++|++|++++|.+ +.++..... +++|++|++++|.++.. ..+.+
T Consensus 40 l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i-~~i~~~~~~-~~~L~~L~l~~N~i~~l--~~~~~ 113 (198)
T d1m9la_ 40 MDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLI-KKIENLDAV-ADTLEELWISYNQIASL--SGIEK 113 (198)
T ss_dssp CHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEE-CSCSSHHHH-HHHCCEEECSEEECCCH--HHHHH
T ss_pred hhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhccccc-ccccccccc-ccccccccccccccccc--ccccc
Confidence 3445666666666666666665 333 356666666666666665 344433222 55666666666655421 11223
Q ss_pred CCCCcEEecCCCccccccccCcceEEEecCccccccCC-ccccCCCCccEEEeccCccc
Q 036588 117 CKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIP-SDIANCSYLRILVLQFNNFS 174 (541)
Q Consensus 117 l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~ 174 (541)
+++ |+.|++++|.+.+... ..+..+++|+.|++++|.+.
T Consensus 114 l~~-------------------L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~ 153 (198)
T d1m9la_ 114 LVN-------------------LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHH-------------------SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred ccc-------------------ccccccccchhccccccccccCCCccceeecCCCccc
Confidence 333 3335555554443211 23455666666666666544
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.09 E-value=4.1e-13 Score=113.43 Aligned_cols=108 Identities=26% Similarity=0.204 Sum_probs=53.2
Q ss_pred hcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcce
Q 036588 373 FHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQW 452 (541)
Q Consensus 373 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 452 (541)
+..+++|++|++++|.+.. + ..+..+++|++|++++|.+... +.....+++|+.|++++|.+... +.+..+++|+.
T Consensus 44 l~~L~~L~~L~Ls~n~I~~-i-~~l~~l~~L~~L~Ls~N~i~~i-~~~~~~~~~L~~L~l~~N~i~~l-~~~~~l~~L~~ 119 (198)
T d1m9la_ 44 LSTLKACKHLALSTNNIEK-I-SSLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASL-SGIEKLVNLRV 119 (198)
T ss_dssp HHHTTTCCEEECSEEEESC-C-CCHHHHTTCCEEECCEEEECSC-SSHHHHHHHCCEEECSEEECCCH-HHHHHHHHSSE
T ss_pred HhcccccceeECcccCCCC-c-ccccCCccccChhhcccccccc-ccccccccccccccccccccccc-ccccccccccc
Confidence 4456666666666666542 2 2355555666666666655432 22233344555555555554422 22344455555
Q ss_pred EeccCCcCCCCCC-ccccCCCCccEeeCCCCcc
Q 036588 453 LDLSDNQLSGSLP-SFKFKMPLLQFLDLSSNRL 484 (541)
Q Consensus 453 L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~ 484 (541)
|++++|.+.+... ..+..+++|++|++++|++
T Consensus 120 L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l 152 (198)
T d1m9la_ 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp EEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred cccccchhccccccccccCCCccceeecCCCcc
Confidence 5555555442111 2344455555555555544
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=9.1e-10 Score=88.41 Aligned_cols=140 Identities=15% Similarity=0.004 Sum_probs=80.1
Q ss_pred cEEEccCcccccCCCcCCcCCccCCeEEcccC-CCCCccchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccC
Q 036588 380 EELYLSNNMFYGEIPSDTQNCSYLRILVLKFN-NFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSD 457 (541)
Q Consensus 380 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~ 457 (541)
+.++..+.... ..+..+..+++|++|++.++ .+..+.+..|..+++|+.|++++|++....+. +..+++|+.|++++
T Consensus 11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~ 89 (156)
T d2ifga3 11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (156)
T ss_dssp SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence 34555554443 33445666677777777654 36656666677777777777777777655444 56677777777777
Q ss_pred CcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCcc
Q 036588 458 NQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCS 521 (541)
Q Consensus 458 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 521 (541)
|.+....+..+. ..+|++|++++|++.-.-....+...-......+....+....|..+...|
T Consensus 90 N~l~~l~~~~~~-~~~l~~L~L~~Np~~C~C~~~~l~~~~~~~~~~~~~~~~~C~~p~~l~~~p 152 (156)
T d2ifga3 90 NALESLSWKTVQ-GLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMP 152 (156)
T ss_dssp SCCSCCCSTTTC-SCCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSSCCC
T ss_pred CCCcccChhhhc-cccccccccCCCcccCCchHHHHHHHHHhccCccCcCCcEECcChHHCcCC
Confidence 777744444443 346888888888773222111222222222333444555555665555554
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=1.2e-09 Score=87.62 Aligned_cols=109 Identities=23% Similarity=0.113 Sum_probs=77.8
Q ss_pred CCccCCeEEcccCCCCCccchhhhccCCCcEEEccccc-cccccCC-CcccCCcceEeccCCcCCCCCCccccCCCCccE
Q 036588 399 NCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNR-LQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQF 476 (541)
Q Consensus 399 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 476 (541)
.+...+.++..++...+ .+..+..+++|++|++.++. +....+. +..+++|+.|++++|.+..+.+.+|..+++|++
T Consensus 6 ~c~~~~~l~c~~~~~~~-~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~ 84 (156)
T d2ifga3 6 CPHGSSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84 (156)
T ss_dssp CCSSSSCEECCSSCCCT-TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred CcCCCCeEEecCCCCcc-CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence 34455667777776653 45567778888888887664 5543333 677888888888888887666777888888888
Q ss_pred eeCCCCccccccCcccccCCcccceeeeccceec
Q 036588 477 LDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 477 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 510 (541)
|++++|.+ +.++...+... +|+.|++++|++.
T Consensus 85 L~Ls~N~l-~~l~~~~~~~~-~l~~L~L~~Np~~ 116 (156)
T d2ifga3 85 LNLSFNAL-ESLSWKTVQGL-SLQELVLSGNPLH 116 (156)
T ss_dssp EECCSSCC-SCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred eeccCCCC-cccChhhhccc-cccccccCCCccc
Confidence 88888888 45665666543 6888888888875
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=6.2e-08 Score=78.06 Aligned_cols=82 Identities=28% Similarity=0.203 Sum_probs=46.4
Q ss_pred ccCCcceEeccCCcCCCCC--CccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCC-------
Q 036588 446 HLFQLQWLDLSDNQLSGSL--PSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSD------- 516 (541)
Q Consensus 446 ~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~------- 516 (541)
.+++|++|++++|.++... +..+..+++|+.|++++|.+.+ ++.........|+.+++.+|++.+...+.
T Consensus 63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~-l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i 141 (162)
T d1koha1 63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI 141 (162)
T ss_dssp HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC-GGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcccc-chhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence 4556666666666665422 2334556777777777777633 33222233445777777777766433322
Q ss_pred CCCccccceEEe
Q 036588 517 TPNCSYLRILVV 528 (541)
Q Consensus 517 ~~~~~~L~~L~l 528 (541)
++.+|+|+.||-
T Consensus 142 ~~~~P~L~~LDg 153 (162)
T d1koha1 142 RERFPKLLRLDG 153 (162)
T ss_dssp HTTSTTCCEETT
T ss_pred HHHCCCCCEECc
Confidence 456677776653
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=6.5e-07 Score=71.87 Aligned_cols=66 Identities=21% Similarity=0.174 Sum_probs=34.9
Q ss_pred cCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCC-hhhhhhcCCCcEeeccccccCc
Q 036588 42 GNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELP-PNFCNHLSNLESLFLKSNMFHG 108 (541)
Q Consensus 42 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~ 108 (541)
..+..+..++...+... .++..+..+++|++|++++|.+...-+ ...+..+++|++|++++|.+++
T Consensus 39 ~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~ 105 (162)
T d1koha1 39 VAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 105 (162)
T ss_dssp TTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC
T ss_pred hhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcccc
Confidence 33334444444333322 334444566777777777777633211 2333446777777777776664
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.52 E-value=2.2e-05 Score=62.96 Aligned_cols=16 Identities=6% Similarity=0.065 Sum_probs=8.1
Q ss_pred ccCCCCccEeeCCCCc
Q 036588 468 KFKMPLLQFLDLSSNR 483 (541)
Q Consensus 468 ~~~~~~L~~L~l~~~~ 483 (541)
+...++|++|++++|.
T Consensus 96 L~~n~sL~~L~l~~n~ 111 (167)
T d1pgva_ 96 TLVTQSIVEFKADNQR 111 (167)
T ss_dssp TTTTCCCSEEECCCCS
T ss_pred HHhCCcCCEEECCCCc
Confidence 3344555555555543
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.46 E-value=1.1e-05 Score=64.80 Aligned_cols=88 Identities=16% Similarity=0.142 Sum_probs=51.5
Q ss_pred CCCeEEEEecCC-ccee----eeCCcccCCCCCcEecccccccCCc----cchhhhhcCCCcEEEeecCccCCCCChhhh
Q 036588 20 TYRVTALNISGL-NLTV----TIPSELGNLSSLQTLDLSFNWFSGS----IPASIFNMSSLLSINFINNALFGELPPNFC 90 (541)
Q Consensus 20 ~~~l~~L~l~~~-~i~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 90 (541)
.+.|++|+|+++ .++. .+..++...++|++|+|++|.+.+. +...+...+.|++|++++|.+.......++
T Consensus 14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~ 93 (167)
T d1pgva_ 14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 93 (167)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence 356777888764 4542 2444566777777777777766533 223445567777777777766433223332
Q ss_pred hh---cCCCcEeeccccccC
Q 036588 91 NH---LSNLESLFLKSNMFH 107 (541)
Q Consensus 91 ~~---l~~L~~L~l~~~~~~ 107 (541)
+. .++|++|+++++.+.
T Consensus 94 ~aL~~n~sL~~L~l~~n~~~ 113 (167)
T d1pgva_ 94 RSTLVTQSIVEFKADNQRQS 113 (167)
T ss_dssp HHTTTTCCCSEEECCCCSSC
T ss_pred HHHHhCCcCCEEECCCCcCC
Confidence 22 355777777665443
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.76 E-value=0.00011 Score=58.83 Aligned_cols=41 Identities=10% Similarity=0.196 Sum_probs=20.3
Q ss_pred cCCccCCeEEcccCCCCCccc----hhhhccCCCcEEEccccccc
Q 036588 398 QNCSYLRILVLKFNNFPGAIP----KEISNLTKLEKLDLQYNRLQ 438 (541)
Q Consensus 398 ~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~ 438 (541)
...++|++|++++|.++.... ..+...++++.+++++|.+.
T Consensus 43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~ 87 (166)
T d1io0a_ 43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 87 (166)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence 345555566666555543222 22334455555555555543
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.60 E-value=0.00021 Score=57.07 Aligned_cols=109 Identities=18% Similarity=0.140 Sum_probs=57.4
Q ss_pred CCccCCeEEccc-CCCCCcc----chhhhccCCCcEEEccccccccccC-----CCcccCCcceEeccCCcCCCC----C
Q 036588 399 NCSYLRILVLKF-NNFPGAI----PKEISNLTKLEKLDLQYNRLQGTIP-----YAGHLFQLQWLDLSDNQLSGS----L 464 (541)
Q Consensus 399 ~~~~L~~L~l~~-~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~----~ 464 (541)
+.+.|++|++++ +.++... ..++...++|++|++++|.+..... .+...+.++.+++.+|.+.+. +
T Consensus 15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l 94 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 94 (166)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence 456677777765 3344322 2334456778888888877643211 134456677777777665442 2
Q ss_pred CccccCCCCccEeeCCC--Cccccc----cCcccccCCcccceeeeccce
Q 036588 465 PSFKFKMPLLQFLDLSS--NRLSTE----LPTNVFHNLPFLEELYLSNNM 508 (541)
Q Consensus 465 ~~~~~~~~~L~~L~l~~--~~~~~~----~~~~~~~~~~~L~~L~l~~~~ 508 (541)
...+...++|+.++|+. |++... +. ..+..++.|+.|++..+.
T Consensus 95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La-~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIA-NMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHH-HHHHHCSSCCEEECCCSS
T ss_pred HHHHHhCccccEEeeccCCCcCcHHHHHHHH-HHHHhCCCcCEEeCcCCC
Confidence 23445566666655543 333211 11 233455666666665443
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