Citrus Sinensis ID: 036594

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210----
Protein Sequence
NSSSSSTKSSTTFKKKPRRKSSAFSKSKIQKTKTLSGTGSSTKVNVSSVVEKSSGEKQLEQPKKSDKAVNVQALSQNGNPLGRRDLGKGVVRWICQGMRAMASDFASAEIQGEFSELRQRMGPGLTFVIEAQPYLNAIPMPVGLEAVCLKAGTHYPTLFDHFQRELRDVLQELQQKSLVQDWHETESWKLLKELANSAQHRAIVRRVTQPKPVQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccEEEEccEEEcccccHHHcccccccccccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccEEEEEEccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccEEEEEEEcccccccEEEEccccccccccccccccccccccEEHHHEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcHHHccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHcHcccHHHHHHHHHHHcHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
nssssstkssttfkkkprrkssafskskiqktktlsgtgsstkvNVSSVVEkssgekqleqpkksdkAVNVQALsqngnplgrrdlgkGVVRWICQGMRAMASDFASAEIQGEFSELRQRMGPGLTFVIEAqpylnaipmpvGLEAVCLkagthyptlFDHFQRELRDVLQELQQKSLVQDWHETESWKLLKELANSAQHRAIVRRVTQPKPVQ
Flexible Loop (DISEMBL)
nssssstkssttfkkkprrkssafskskiqktktlsgtgsstkvnvsSVVEkssgekqleqpkksdkavnvqalsqngnplgrrdlGKGVVRWICQGMRAMASDFASAEIQGEFSELRQRMGPGLTFVIEAQPYLNAIPMPVGLEAVCLKAGTHYPTLFDHFQRELRDVLQELQQKSLVQDWHETESWKLLKELANsaqhraivrrvtqpkpvq
Low Complexity Region (SEG)
NssssstkssttfkkkprrkssAFSKSKIQktktlsgtgsstkvnvssvvekssgekQLEQPKKSDKAVNVQALSQNGNPLGRRDLGKGVVRWICQGMRAMASDFASAEIQGEFSELRQRMGPGLTFVIEAQPYLNAIPMPVGLEAVCLKAGTHYPTLFDHFQRELRDVLQELQQKSLVQDWHETESWKLLKELANSAQHRAIVRRVTQPKPVQ
Disordered region (IsUnstruct)
************************************************************************************DLGKGVVRWICQGMRAMASDFASAEIQGEFSELRQRMGPGLTFVIEAQPYLNAIPMPVGLEAVCLKAGTHYPTLFDHFQRELRDVLQELQQKSLVQDWHETESWKLLKELAN******************
Disordered Region (DISOPRED)
************************************************************************ALSQNGNPLGRRDLGKGVVRWICQGMRAMASDFASAEIQGEFSELRQRMGPGLTFVIEAQPYLNAIPMPVGLEAVCLKAGTHYPTLFDHFQRELRDVLQ**Q******DWHETESWKLL***********************
Disordered Region (DISEMBL)
*******************************************************************AVNVQALSQNGNPLGRRDLGKGVVRWICQGMRAMASDFASAEIQGEFSELRQRMGPGLTFVIEAQPYLNAIPMPVGLEAVCLKAGTHYPTLFDHFQRELRDVLQELQQKSLVQDWHETESWKLLKELANSAQHRAIVRRVTQPKPVQ
Disordered Region (DISPRO)
***************************KIQKTKTLSG**SSTKVNV*******************DKAVNVQALSQNGNPLGRRDLGKGVVRWICQGMRAMASDFASAEIQGEFSELRQRMGPGLTFVIEAQPYLNAIPMPVGLEAVCLKAGTHYPTLFDHFQRELRDVLQELQQKSLVQDWHETESWKLLKELANSA****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
NSSSSSTKSSTTFKKKPRRKSSAFSKSKIQKTKTLSGTGSSTKVNVSSVVEKSSGEKQLEQPKKSDKAVNVQALSQNGNPLGRRDLGKGVVRWICQGMRAMASDFASAEIQGEFSELRQRMGPGLTFVIEAQPYLNAIPMPVGLEAVCLKAGTHYPTLFDHFQRELRDVLQELQQKSLVQDWHETESWKLLKELANSAQHRAIVRRVTQPKPVQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
222422959	626	AT5G35970 [Arabidopsis thaliana]	0.897	0.306	0.6	2e-67
30692868	961	putative DNA-binding protein [Arabidopsi	0.929	0.207	0.584	3e-67
449451781	957	PREDICTED: DNA-binding protein SMUBP-2-l	0.738	0.165	0.727	6e-67
297805152	979	hypothetical protein ARALYDRAFT_493645 [	0.925	0.202	0.621	3e-66
225454589	953	PREDICTED: DNA-binding protein SMUBP-2 [	0.710	0.159	0.756	3e-65
255566048	989	DNA-binding protein smubp-2, putative [R	0.920	0.199	0.601	4e-64
147867288	806	hypothetical protein VITISV_022848 [Viti	0.686	0.182	0.701	3e-57
356536591	949	PREDICTED: DNA-binding protein SMUBP-2-l	0.831	0.187	0.554	1e-50
222623514	980	hypothetical protein OsJ_08074 [Oryza sa	0.700	0.153	0.597	1e-47
218191424	979	hypothetical protein OsI_08612 [Oryza sa	0.700	0.153	0.597	2e-47

>gi|222422959|dbj|BAH19464.1| AT5G35970 [Arabidopsis thaliana]

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 123/205 (60%), Positives = 160/205 (78%), Gaps = 13/205 (6%)

Query: 10  STTFKKKPRRKSSAFSKSKIQKTKTLSGTGSSTKVNVSSVVEKSSGEKQLEQPKKSDKAV 69
           S+  KKKPRRKS+   K + +K +  +    S  ++V            +E+PK +DK +
Sbjct: 56  SSVTKKKPRRKSNVSDKLRFKKIEKRNDNTESESLSV------------VEEPK-NDKEL 102

Query: 70  NVQALSQNGNPLGRRDLGKGVVRWICQGMRAMASDFASAEIQGEFSELRQRMGPGLTFVI 129
           +++AL+QNG+PLGRRDLG+ VV+WI Q M+AMASDFA+AE+QGEFSELRQ +G GLTFVI
Sbjct: 103 SLRALNQNGDPLGRRDLGRNVVKWISQAMKAMASDFATAEVQGEFSELRQNVGSGLTFVI 162

Query: 130 EAQPYLNAIPMPVGLEAVCLKAGTHYPTLFDHFQRELRDVLQELQQKSLVQDWHETESWK 189
           +AQPYLNAIPMP+G E +CLKA THYPTLFDHFQRELRDVLQ+L++K++++ W E+ESWK
Sbjct: 163 QAQPYLNAIPMPLGSEVICLKACTHYPTLFDHFQRELRDVLQDLERKNIMESWKESESWK 222

Query: 190 LLKELANSAQHRAIVRRVTQPKPVQ 214
           LLKE+ANSAQHR + R+  Q KPVQ
Sbjct: 223 LLKEIANSAQHREVARKAAQAKPVQ 247

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30692868|ref|NP_198446.3| putative DNA-binding protein [Arabidopsis thaliana] gi|332006651|gb|AED94034.1| putative DNA-binding protein [Arabidopsis thaliana]

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 124/212 (58%), Positives = 161/212 (75%), Gaps = 13/212 (6%)

Query: 3   SSSSTKSSTTFKKKPRRKSSAFSKSKIQKTKTLSGTGSSTKVNVSSVVEKSSGEKQLEQP 62
            S     S+  KKKPRRKS+   K + +K +  +    S  ++V            +E+P
Sbjct: 49  CSGVNGGSSVTKKKPRRKSNVSDKLRFKKIEKRNDNTESESLSV------------VEEP 96

Query: 63  KKSDKAVNVQALSQNGNPLGRRDLGKGVVRWICQGMRAMASDFASAEIQGEFSELRQRMG 122
           K +DK ++++AL+QNG+PLGRRDLG+ VV+WI Q M+AMASDFA+AE+QGEFSELRQ +G
Sbjct: 97  K-NDKELSLRALNQNGDPLGRRDLGRNVVKWISQAMKAMASDFATAEVQGEFSELRQNVG 155

Query: 123 PGLTFVIEAQPYLNAIPMPVGLEAVCLKAGTHYPTLFDHFQRELRDVLQELQQKSLVQDW 182
            GLTFVI+AQPYLNAIPMP+G E +CLKA THYPTLFDHFQRELRDVLQ+L++K++++ W
Sbjct: 156 SGLTFVIQAQPYLNAIPMPLGSEVICLKACTHYPTLFDHFQRELRDVLQDLERKNIMESW 215

Query: 183 HETESWKLLKELANSAQHRAIVRRVTQPKPVQ 214
            E+ESWKLLKE+ANSAQHR + R+  Q KPVQ
Sbjct: 216 KESESWKLLKEIANSAQHREVARKAAQAKPVQ 247

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451781|ref|XP_004143639.1| PREDICTED: DNA-binding protein SMUBP-2-like [Cucumis sativus] gi|449527761|ref|XP_004170878.1| PREDICTED: DNA-binding protein SMUBP-2-like [Cucumis sativus]

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 115/158 (72%), Positives = 140/158 (88%)

Query: 57  KQLEQPKKSDKAVNVQALSQNGNPLGRRDLGKGVVRWICQGMRAMASDFASAEIQGEFSE 116
           ++LE+ KK D+ VNVQ + QNG+PLGRR+LGK VVRWI   MRAMASDFA+AE+QG+F E
Sbjct: 86  RELEEKKKKDREVNVQGIYQNGDPLGRRELGKSVVRWIGLAMRAMASDFAAAEVQGDFPE 145

Query: 117 LRQRMGPGLTFVIEAQPYLNAIPMPVGLEAVCLKAGTHYPTLFDHFQRELRDVLQELQQK 176
           L+QRMG GLTFVI+AQPYLNA+PMP+GLEAVCLKA THYPTLFDHFQRELRDVLQ+LQ++
Sbjct: 146 LQQRMGQGLTFVIQAQPYLNAVPMPLGLEAVCLKASTHYPTLFDHFQRELRDVLQDLQRQ 205

Query: 177 SLVQDWHETESWKLLKELANSAQHRAIVRRVTQPKPVQ 214
           SL  DW ET+SWKLLK+LA+S QH+AI R++++PK VQ
Sbjct: 206 SLFLDWRETQSWKLLKKLAHSVQHKAIARKISEPKVVQ 243

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297805152|ref|XP_002870460.1| hypothetical protein ARALYDRAFT_493645 [Arabidopsis lyrata subsp. lyrata] gi|297316296|gb|EFH46719.1| hypothetical protein ARALYDRAFT_493645 [Arabidopsis lyrata subsp. lyrata]

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 125/201 (62%), Positives = 162/201 (80%), Gaps = 3/201 (1%)

Query: 14  KKKPRRKSSAFSKSKIQKTKTLSGTGSSTKVNVSSVVEKSSGEKQLEQPKKSDKAVNVQA 73
           KKKPRRKS+     K++  K      +S  V++SS +     +++ E+  KSDK ++++A
Sbjct: 68  KKKPRRKSNV--SDKLRSKKVEKRNDNSESVSLSSEIVVEEVKEEDEK-PKSDKELSLRA 124

Query: 74  LSQNGNPLGRRDLGKGVVRWICQGMRAMASDFASAEIQGEFSELRQRMGPGLTFVIEAQP 133
           L+QNG+PLGRRDLG+ VV+WI Q M+AMASDFA+AE+QGEFSELRQ +G GLTFVI+AQP
Sbjct: 125 LNQNGDPLGRRDLGRNVVKWISQAMKAMASDFANAEVQGEFSELRQNVGSGLTFVIQAQP 184

Query: 134 YLNAIPMPVGLEAVCLKAGTHYPTLFDHFQRELRDVLQELQQKSLVQDWHETESWKLLKE 193
           YLNAIPMP+G E +CLKA THYPTLFDHFQRELRDVLQ+L++K+++++W ETESWKLLKE
Sbjct: 185 YLNAIPMPLGSEVICLKACTHYPTLFDHFQRELRDVLQDLERKNIMENWKETESWKLLKE 244

Query: 194 LANSAQHRAIVRRVTQPKPVQ 214
           +ANSAQHR + R+  Q KPVQ
Sbjct: 245 IANSAQHREVARKAAQAKPVQ 265

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454589|ref|XP_002264216.1| PREDICTED: DNA-binding protein SMUBP-2 [Vitis vinifera]

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 115/152 (75%), Positives = 135/152 (88%)

Query: 63  KKSDKAVNVQALSQNGNPLGRRDLGKGVVRWICQGMRAMASDFASAEIQGEFSELRQRMG 122
           K  +K V+V+ L QNG+PLGRR+L + VVRWI QGMR MA DFASAE+QGEF+ELRQRMG
Sbjct: 88  KSKNKPVSVRTLYQNGDPLGRRELRRCVVRWISQGMRGMALDFASAELQGEFAELRQRMG 147

Query: 123 PGLTFVIEAQPYLNAIPMPVGLEAVCLKAGTHYPTLFDHFQRELRDVLQELQQKSLVQDW 182
           PGL+FVI+AQPYLNAIPMP+G EA+CLKA THYPTLFDHFQRELRDVLQ+ Q+KS  QDW
Sbjct: 148 PGLSFVIQAQPYLNAIPMPLGHEAICLKACTHYPTLFDHFQRELRDVLQDHQRKSQFQDW 207

Query: 183 HETESWKLLKELANSAQHRAIVRRVTQPKPVQ 214
            ET+SW+LLKELANSAQHRAI R+V+QPKP++
Sbjct: 208 RETQSWQLLKELANSAQHRAISRKVSQPKPLK 239

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566048|ref|XP_002524012.1| DNA-binding protein smubp-2, putative [Ricinus communis] gi|223536739|gb|EEF38380.1| DNA-binding protein smubp-2, putative [Ricinus communis]

 Score =  249 bits (637), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 121/201 (60%), Positives = 152/201 (75%), Gaps = 4/201 (1%)

Query: 16  KPRRKSSAFSKSKIQKTKTLSGTGSSTKVNVSSVVEKSSGEKQLEQPKKSDKAVNVQALS 75
           KPR  ++  +K +    K  +G   +TK   ++  +        E+ +K    VNV++L 
Sbjct: 77  KPRTATT--TKKRKAHVKKSTGMSKNTKKYTAANTDGGKLAVSEEREEKVKMKVNVKSLH 134

Query: 76  QNGNPLGRRDLGKGVVRWICQGMRAMASDFASAEIQGEFSELRQRMG--PGLTFVIEAQP 133
           QNG+PLG++DLGK VV+WI QGMRAMA+DFASAE QGEF ELRQRM    GLTFVI+AQP
Sbjct: 135 QNGDPLGKKDLGKTVVKWISQGMRAMAADFASAETQGEFLELRQRMDLEAGLTFVIQAQP 194

Query: 134 YLNAIPMPVGLEAVCLKAGTHYPTLFDHFQRELRDVLQELQQKSLVQDWHETESWKLLKE 193
           Y+NA+P+P+G EA+CLKA  HYPTLFDHFQRELRDVLQ+LQ+K LVQDW  TESWKLLKE
Sbjct: 195 YINAVPIPLGFEALCLKACIHYPTLFDHFQRELRDVLQDLQRKGLVQDWQNTESWKLLKE 254

Query: 194 LANSAQHRAIVRRVTQPKPVQ 214
           LANS QHRA+ R+V++PKP+Q
Sbjct: 255 LANSVQHRAVARKVSKPKPLQ 275

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147867288|emb|CAN81193.1| hypothetical protein VITISV_022848 [Vitis vinifera]

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 106/151 (70%), Positives = 125/151 (82%), Gaps = 4/151 (2%)

Query: 63  KKSDKAVNVQALSQNGNPLGRRDLGKGVVRWICQGMRAMASDFASAEIQGEFSELRQRMG 122
           K  +K V+V+ L QNG+PLGRR+L + VVRWI QGMR MA DFASAE+QGEF+ELRQRMG
Sbjct: 88  KPKNKPVSVRTLYQNGDPLGRRELRRCVVRWISQGMRGMALDFASAELQGEFAELRQRMG 147

Query: 123 PGLTFVIEAQPYLNAIPMPVGLEAVCLKAGTHYPTLFDHFQRELRDVLQELQQKSLVQDW 182
           PGL+FVI+AQPYLNAIPMP+G EA+CLKA THYPTLFDHFQRELRDVLQ+ Q+KS  QDW
Sbjct: 148 PGLSFVIQAQPYLNAIPMPLGHEAICLKACTHYPTLFDHFQRELRDVLQDHQRKSQFQDW 207

Query: 183 HETESWKLLKELANSAQH----RAIVRRVTQ 209
            ET+SW+LLKELANS       +AI  R+ +
Sbjct: 208 RETQSWQLLKELANSGMELDKAKAIQSRIDE 238

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536591|ref|XP_003536820.1| PREDICTED: DNA-binding protein SMUBP-2-like [Glycine max]

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 107/193 (55%), Positives = 139/193 (72%), Gaps = 15/193 (7%)

Query: 27  SKIQKTKTLSGTG--SSTKVNVSSVVEKSSGEKQLEQPKKSDKAVNVQALSQNGNPLGRR 84
           +   +TK +S T   S  +   S  V+K+   +++E+            L QNG+P+G++
Sbjct: 53  TNTNETKVVSSTNVKSRRRRRRSGFVDKTCQTREVEE----------GILHQNGDPIGKK 102

Query: 85  DLGKGVVRWICQGMRAMASDFASAEIQGEFSELRQR--MGPGLTFVIEAQPYLNAIPMPV 142
           DLGK V+RWI   MRAMASD A+AE++G   E      MGPGLTF++ AQPYLNA+PMP+
Sbjct: 103 DLGKSVIRWIRDSMRAMASDLAAAELEGGEGEFELWELMGPGLTFIMLAQPYLNAVPMPI 162

Query: 143 GLEAVCLKAGTHYPTLFDHFQRELRDVLQELQQ-KSLVQDWHETESWKLLKELANSAQHR 201
           GLE +CLKA THYPTLFDHFQRELR VL++LQQ  S +QDW +T+SWKLLK+LANSAQHR
Sbjct: 163 GLEGLCLKACTHYPTLFDHFQRELRQVLRDLQQSNSFIQDWRDTKSWKLLKDLANSAQHR 222

Query: 202 AIVRRVTQPKPVQ 214
           A+VR++TQPK VQ
Sbjct: 223 AVVRKITQPKSVQ 235

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222623514|gb|EEE57646.1| hypothetical protein OsJ_08074 [Oryza sativa Japonica Group]

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 95/159 (59%), Positives = 118/159 (74%), Gaps = 9/159 (5%)

Query: 62  PKKSDKAVNVQALSQNGNPLGRRDLGKGVVRWICQGMRAMASDFASAEIQGEFSELR--- 118
           P   + ++ V  L QNG+PLGR++LG+ VV W+ QGM++MAS FASAE+QG+ ++L    
Sbjct: 101 PSMEEASIRVGTLYQNGDPLGRKELGRCVVEWLRQGMQSMASKFASAELQGDMADLDAAA 160

Query: 119 --QRMGPG---LTFVIEAQPYLNAIPMPVGLEAVCLKAGTHYPTLFDHFQRELRDVLQEL 173
             Q  G     L FVI+AQPY++AIPMP GLEA+CLKA THYPTLFDHFQRELRDVLQ  
Sbjct: 161 LAQEWGSADGRLGFVIQAQPYMSAIPMPKGLEALCLKACTHYPTLFDHFQRELRDVLQSC 220

Query: 174 QQKSLVQDWHETESWKLLKELANSAQHRAIVRRVTQPKP 212
           Q + L+ DW  T+SWKLLKE+ANS QHR  VRR T P+P
Sbjct: 221 QNQGLISDWRSTQSWKLLKEMANSVQHREAVRR-TVPRP 258

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218191424|gb|EEC73851.1| hypothetical protein OsI_08612 [Oryza sativa Indica Group]

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 95/159 (59%), Positives = 118/159 (74%), Gaps = 9/159 (5%)

Query: 62  PKKSDKAVNVQALSQNGNPLGRRDLGKGVVRWICQGMRAMASDFASAEIQGEFSELR--- 118
           P   + ++ V  L QNG+PLGR++LG+ VV W+ QGM++MAS FASAE+QG+ ++L    
Sbjct: 100 PSMEEASIRVGTLYQNGDPLGRKELGRCVVEWLRQGMQSMASKFASAELQGDMADLDAAA 159

Query: 119 --QRMGPG---LTFVIEAQPYLNAIPMPVGLEAVCLKAGTHYPTLFDHFQRELRDVLQEL 173
             Q  G     L FVI+AQPY++AIPMP GLEA+CLKA THYPTLFDHFQRELRDVLQ  
Sbjct: 160 LAQEWGSADGRLGFVIQAQPYMSAIPMPKGLEALCLKACTHYPTLFDHFQRELRDVLQSC 219

Query: 174 QQKSLVQDWHETESWKLLKELANSAQHRAIVRRVTQPKP 212
           Q + L+ DW  T+SWKLLKE+ANS QHR  VRR T P+P
Sbjct: 220 QNQGLISDWRSTQSWKLLKEMANSVQHREAVRR-TVPRP 257

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
TAIR|locus:2162858	961	AT5G35970 [Arabidopsis thalian	0.724	0.161	0.705	6.8e-59

TAIR|locus:2162858 AT5G35970 [Arabidopsis thaliana (taxid:3702)]

 Score = 610 (219.8 bits), Expect = 6.8e-59, P = 6.8e-59
 Identities = 110/156 (70%), Positives = 139/156 (89%)

Query:    59 LEQPKKSDKAVNVQALSQNGNPLGRRDLGKGVVRWICQGMRAMASDFASAEIQGEFSELR 118
             +E+PK +DK ++++AL+QNG+PLGRRDLG+ VV+WI Q M+AMASDFA+AE+QGEFSELR
Sbjct:    93 VEEPK-NDKELSLRALNQNGDPLGRRDLGRNVVKWISQAMKAMASDFATAEVQGEFSELR 151

Query:   119 QRMGPGLTFVIEAQPYLNAIPMPVGLEAVCLKAGTHYPTLFDHFQRELRDVLQELQQKSL 178
             Q +G GLTFVI+AQPYLNAIPMP+G E +CLKA THYPTLFDHFQRELRDVLQ+L++K++
Sbjct:   152 QNVGSGLTFVIQAQPYLNAIPMPLGSEVICLKACTHYPTLFDHFQRELRDVLQDLERKNI 211

Query:   179 VQDWHETESWKLLKELANSAQHRAIVRRVTQPKPVQ 214
             ++ W E+ESWKLLKE+ANSAQHR + R+  Q KPVQ
Sbjct:   212 MESWKESESWKLLKEIANSAQHREVARKAAQAKPVQ 247


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      214       166   0.00097  107 3  11 22  0.39    32
                                                     30  0.46    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  156 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.75u 0.19s 15.94t   Elapsed:  00:00:01
  Total cpu time:  15.75u 0.19s 15.94t   Elapsed:  00:00:01
  Start:  Mon May 20 17:32:53 2013   End:  Mon May 20 17:32:54 2013

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT5G35970	DNA-binding protein, putative; DNA-binding protein, putative; FUNCTIONS IN- DNA binding; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast, chloroplast envelope; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- DEAD-like helicase, N-terminal (InterPro-IPR014001); BEST Arabidopsis thaliana protein match is- DNA-binding protein, putative (TAIR-AT2G03270.1); Has 4190 Blast hits to 3792 proteins in 629 species- Archae - 127; Bacteria - 1245; Metazoa - 1069; Fungi - 666; Plants - 278; Viruses - 0; Other Eukaryotes - 805 (sourc [...] (961 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	ABA1	ABA1 (ABA DEFICIENT 1); zeaxanthin epoxidase; Encodes a single copy zeaxanthin epoxidase gene t [...] (667 aa)				•					0.885
	AT3G01060	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (455 aa)				•					0.835
	JAC1	JAC1 (J-DOMAIN PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1); heat shock protein bi [...] (651 aa)				•					0.812
	ATGCN5	ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5); transporter; member of GCN subfamily (692 aa)				•					0.808
	NDA1	NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1); NADH dehydrogenase; Internal NAD(P)H dehydrogenase [...] (510 aa)				•					0.770
	CH1	CH1 (CHLORINA 1); chlorophyllide a oxygenase; Encodes chlorophyllide a oxygenase which c [...] (536 aa)				•					0.768
	HCF173	HCF173 (high chlorophyll fluorescence phenotype 173); binding / catalytic/ transcription repres [...] (598 aa)				•					0.766
	SIGE	SIGE (SIGMA FACTOR E); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription f [...] (517 aa)				•					0.764
	PHT4;1	PHT4;1; carbohydrate transmembrane transporter/ inorganic diphosphate transmembrane transporter [...] (512 aa)				•					0.760
	AT5G57345	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (188 aa)				•					0.758

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	214
PF05402	68	PqqD: Coenzyme PQQ synthesis protein D (PqqD); Int	87.43

>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences

Probab=87.43  E-value=0.91  Score=30.33  Aligned_cols=42  Identities=17%  Similarity=0.326  Sum_probs=33.1

Q ss_pred             CCCcchHHHHhhhhccCCchhhHhHHHHHHHHHHHHhchhhh
Q 036594          139 PMPVGLEAVCLKAGTHYPTLFDHFQRELRDVLQELQQKSLVQ  180 (214)
Q Consensus       139 PMP~GlEalCLKA~tHYPTLFDHFQRELRdvL~~~Q~kgli~  180 (214)
                      .-|.-.+.+|.+-+.+|+.-.+.-+..+.+.|.+|.++|+|+
T Consensus        27 ~g~~t~~ei~~~l~~~y~~~~~~~~~dv~~fl~~L~~~glIe   68 (68)
T PF05402_consen   27 DGPRTVEEIVDALAEEYDVDPEEAEEDVEEFLEQLREKGLIE   68 (68)
T ss_dssp             -SSS-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT---
T ss_pred             cCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCcCcC
Confidence            346778999999999999999999999999999999999985

This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	214
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 5e-09
 Identities = 44/259 (16%), Positives = 80/259 (30%), Gaps = 75/259 (28%)

Query: 1   NSSSSSTKSSTTFKKKPRRKS-------------SAFS-KSKIQKT---KTLSGTGSSTK 43
              S   +     K KP                 +AF+   KI  T   K ++   S+  
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 44  VNVSSVVEKSSGEKQLEQPKKSD---KAVNV-------QALSQNGNPL-----GRRDLGK 88
               S+   S     L   +      K ++        + L+   NP          +  
Sbjct: 286 TTHISLDHHSMT---LTPDEVKSLLLKYLDCRPQDLPREVLT--TNPRRLSIIAES-IRD 339

Query: 89  GVVRWICQGMRAMASDFASAEIQG-----EFSELRQRMGPGLTFVI--EAQPYLNAIPMP 141
           G+  W     + +  D  +  I+      E +E R+         +   +      IP  
Sbjct: 340 GLATW--DNWKHVNCDKLTTIIESSLNVLEPAEYRKMF---DRLSVFPPSAH----IPTI 390

Query: 142 VGLEAVCLKAGTHYPTL-FDHFQRELRDVLQELQQKSLVQDWHETESW-------KLLKE 193
           + L             + FD  + ++  V+ +L + SLV+   +  +        +L  +
Sbjct: 391 L-LS-----------LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438

Query: 194 LANSAQ-HRAIVRRVTQPK 211
           L N    HR+IV     PK
Sbjct: 439 LENEYALHRSIVDHYNIPK 457

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	214
d1b74a2	147	Glutamate racemase {Aquifex pyrophilus [TaxId: 271	91.28

>d1b74a2 c.78.2.1 (A:106-252) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/glutamate racemase
family: Aspartate/glutamate racemase
domain: Glutamate racemase
species: Aquifex pyrophilus [TaxId: 2714]

Probab=91.28  E-value=0.031  Score=41.24  Aligned_cols=17  Identities=35%  Similarity=0.530  Sum_probs=14.7

Q ss_pred             hhccCCchhhHhHHHHH
Q 036594          151 AGTHYPTLFDHFQRELR  167 (214)
Q Consensus       151 A~tHYPTLFDHFQRELR  167 (214)
                      +|||||-|.|.|+.-+-
T Consensus        72 GCTHyP~l~~~i~~~~~   88 (147)
T d1b74a2          72 GCTHYPLLKKEIKKFLG   88 (147)
T ss_dssp             CCCCTTSCHHHHHHHHC
T ss_pred             ecCcchhHHHHHHHHCC
Confidence            79999999999987663