Citrus Sinensis ID: 036644

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-
MTEELCERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTNVEIEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIILD
cccccccEEEEEEcccccccHHHHHHHHccEEcccccEEEEEEEEcccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEccccHHHHHHHHHHccccEEEEc
cccccccEEEEEEEccccccHHHHHHHHHccEcccccEEEEEEEEEcccccccEEEEEccHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccEEEEEEEccccHHHHHHHHHHHcccEEEEEc
MTEELCERVVVIQDasrdvnssaIGGILknlslkhgdsLKFLAVLHQVnnpmgykirldsssmvrTNQKIIEEHISRKKEEYQTNVEIEQISKLCQaeniefeievrpgvsLKTVAVRVAKKFKATWIILD
MTEELCERVVVIqdasrdvnssaIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYkirldsssmvrTNQKIIEEhisrkkeeyqtNVEIEQISKLCQAENIEFeievrpgvslktVAVRVAkkfkatwiild
MTEELCERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTNVEIEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIILD
*****CERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDS***V****KIIE*********YQTNVEIEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL*
*****CE***VIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVR********************VEIEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIILD
MTEELCERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTNVEIEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIILD
****LCERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTNVEIEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIILD
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTEELCERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTNVEIEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIILD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query131
255569213 726 serine-threonine protein kinase, plant-t 0.954 0.172 0.551 5e-34
359494984 714 PREDICTED: inactive protein kinase SELMO 0.954 0.175 0.529 3e-32
255564434 546 serine-threonine protein kinase, plant-t 0.954 0.228 0.522 6e-30
359479297 672 PREDICTED: uncharacterized protein LOC10 0.961 0.187 0.489 1e-27
356510379 693 PREDICTED: uncharacterized protein LOC10 0.946 0.178 0.536 2e-26
147778594199 hypothetical protein VITISV_023460 [Viti 0.908 0.597 0.5 1e-25
356515329 693 PREDICTED: uncharacterized protein LOC10 0.946 0.178 0.528 8e-25
357479673 289 hypothetical protein MTR_4g128180 [Medic 0.969 0.439 0.480 2e-24
358346787 694 Cysteine-rich receptor-like protein kina 0.954 0.180 0.460 3e-22
224054216 574 predicted protein [Populus trichocarpa] 0.969 0.221 0.376 5e-21
>gi|255569213|ref|XP_002525575.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223535154|gb|EEF36834.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  149 bits (375), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 75/136 (55%), Positives = 93/136 (68%), Gaps = 11/136 (8%)

Query: 7   ERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNP-----------MGYK 55
           +RVVVIQDAS+DV+ SAI  +L N   K GD L    VLHQVNNP           MGYK
Sbjct: 8   QRVVVIQDASKDVSPSAIRWLLDNFPFKPGDVLILFGVLHQVNNPSTLSFMGAGKLMGYK 67

Query: 56  IRLDSSSMVRTNQKIIEEHISRKKEEYQTNVEIEQISKLCQAENIEFEIEVRPGVSLKTV 115
           +++DSSSMV  N K I E ++RK +EY TNVEI++I+K C+ E IEF IEVR G + K V
Sbjct: 68  VKVDSSSMVAMNPKFIAEEVARKTDEYSTNVEIKRIAKHCEEEQIEFNIEVRAGAAPKVV 127

Query: 116 AVRVAKKFKATWIILD 131
           A++ AK  KATWI+LD
Sbjct: 128 AIKAAKYLKATWIVLD 143

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359494984|ref|XP_002272787.2| PREDICTED: inactive protein kinase SELMODRAFT_444075-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255564434|ref|XP_002523213.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223537509|gb|EEF39134.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359479297|ref|XP_002266741.2| PREDICTED: uncharacterized protein LOC100246128 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356510379|ref|XP_003523916.1| PREDICTED: uncharacterized protein LOC100794450 [Glycine max] Back     alignment and taxonomy information
>gi|147778594|emb|CAN75747.1| hypothetical protein VITISV_023460 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356515329|ref|XP_003526353.1| PREDICTED: uncharacterized protein LOC100805266 [Glycine max] Back     alignment and taxonomy information
>gi|357479673|ref|XP_003610122.1| hypothetical protein MTR_4g128180 [Medicago truncatula] gi|355511177|gb|AES92319.1| hypothetical protein MTR_4g128180 [Medicago truncatula] Back     alignment and taxonomy information
>gi|358346787|ref|XP_003637446.1| Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|355503381|gb|AES84584.1| Cysteine-rich receptor-like protein kinase [Medicago truncatula] Back     alignment and taxonomy information
>gi|224054216|ref|XP_002298149.1| predicted protein [Populus trichocarpa] gi|222845407|gb|EEE82954.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 131
cd01989146 STK_N The N-terminal domain of Eukaryotic Serine T 99.7
PRK15005144 universal stress protein F; Provisional 99.44
PRK15456142 universal stress protein UspG; Provisional 99.43
PRK09982142 universal stress protein UspD; Provisional 99.42
PRK15118144 universal stress global response regulator UspA; P 99.4
PRK12652 357 putative monovalent cation/H+ antiporter subunit E 99.26
cd01987124 USP_OKCHK USP domain is located between the N-term 99.23
PRK10116142 universal stress protein UspC; Provisional 99.2
cd01988132 Na_H_Antiporter_C The C-terminal domain of a subfa 99.16
PF00582140 Usp: Universal stress protein family; InterPro: IP 99.14
PRK11175 305 universal stress protein UspE; Provisional 99.13
cd00293130 USP_Like Usp: Universal stress protein family. The 99.06
PRK11175305 universal stress protein UspE; Provisional 98.63
COG0589154 UspA Universal stress protein UspA and related nuc 98.58
PRK10490 895 sensor protein KdpD; Provisional 97.28
TIGR02432189 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t 94.31
COG2205 890 KdpD Osmosensitive K+ channel histidine kinase [Si 94.24
PRK08745223 ribulose-phosphate 3-epimerase; Provisional 94.17
PRK14057254 epimerase; Provisional 93.31
PRK09722229 allulose-6-phosphate 3-epimerase; Provisional 92.7
PRK08091228 ribulose-phosphate 3-epimerase; Validated 92.69
COG0036220 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate 92.58
PF01171182 ATP_bind_3: PP-loop family; InterPro: IPR011063 Th 92.4
cd01992185 PP-ATPase N-terminal domain of predicted ATPase of 91.76
PRK08005210 epimerase; Validated 89.29
PF00834201 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam 83.84
cd0198486 AANH_like Adenine nucleotide alpha hydrolases supe 83.26
PRK08883220 ribulose-phosphate 3-epimerase; Provisional 83.06
PLN02285 334 methionyl-tRNA formyltransferase 82.0
KOG2882306 consensus p-Nitrophenyl phosphatase [Inorganic ion 80.81
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information 
Probab=99.70  E-value=5.7e-16  Score=108.29  Aligned_cols=109  Identities=15%  Similarity=0.188  Sum_probs=77.9

Q ss_pred             EEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCCCCCCceeeccCCCcccccHHHHHHHHHHHHHhhhChHH
Q 036644            8 RVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEEHISRKKEEYQTNVE   87 (131)
Q Consensus         8 ~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (131)
                      +||||+|+| +.|++||+||++.. .+.|+.|+++||.++...+...     .+..  .......++..+..+.     .
T Consensus         1 ~ILVavD~S-~~s~~al~~a~~~a-~~~~~~l~ll~v~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~-----~   66 (146)
T cd01989           1 SVAVAVDKD-KKSKNALKWALDNL-ATKGQTIVLVHVHPPITSIPSS-----SGKL--EVASAYKQEEDKEAKE-----L   66 (146)
T ss_pred             CEEEEecCc-cccHHHHHHHHHhc-cCCCCcEEEEEeccCcccCCCC-----ccch--HHHHHHHHHHHHHHHH-----H
Confidence            589999999 78999999999776 7789999999998753221110     0000  0111111222222222     4


Q ss_pred             HHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644           88 IEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL  130 (131)
Q Consensus        88 l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl  130 (131)
                      |+++.+.|++.+++++..+..|++|.+.|+++|++.++|+|||
T Consensus        67 l~~~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~  109 (146)
T cd01989          67 LLPYRCFCSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVM  109 (146)
T ss_pred             HHHHHHHHhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEE
Confidence            7788889988999999999988667889999999999999998

The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
>PRK15005 universal stress protein F; Provisional Back     alignment and domain information
>PRK15456 universal stress protein UspG; Provisional Back     alignment and domain information
>PRK09982 universal stress protein UspD; Provisional Back     alignment and domain information
>PRK15118 universal stress global response regulator UspA; Provisional Back     alignment and domain information
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed Back     alignment and domain information
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family Back     alignment and domain information
>PRK10116 universal stress protein UspC; Provisional Back     alignment and domain information
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea Back     alignment and domain information
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>cd00293 USP_Like Usp: Universal stress protein family Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK08745 ribulose-phosphate 3-epimerase; Provisional Back     alignment and domain information
>PRK14057 epimerase; Provisional Back     alignment and domain information
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional Back     alignment and domain information
>PRK08091 ribulose-phosphate 3-epimerase; Validated Back     alignment and domain information
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,] Back     alignment and domain information
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK08005 epimerase; Validated Back     alignment and domain information
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 Back     alignment and domain information
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF) Back     alignment and domain information
>PRK08883 ribulose-phosphate 3-epimerase; Provisional Back     alignment and domain information
>PLN02285 methionyl-tRNA formyltransferase Back     alignment and domain information
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query131
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 99.51
3s3t_A146 Nucleotide-binding protein, universal stress PROT 99.5
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 99.47
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 99.46
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 99.44
3fg9_A156 Protein of universal stress protein USPA family; A 99.42
3fdx_A143 Putative filament protein / universal stress PROT; 99.41
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 99.4
3tnj_A150 Universal stress protein (USP); structural genomic 99.39
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 99.36
2z08_A137 Universal stress protein family; uncharacterized c 99.31
3dlo_A155 Universal stress protein; unknown function, struct 99.29
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 99.27
1q77_A138 Hypothetical protein AQ_178; structural genomics, 99.25
3olq_A 319 Universal stress protein E; structural genomics, P 99.18
3ab8_A 268 Putative uncharacterized protein TTHA0350; tandem- 99.12
3cis_A 309 Uncharacterized protein; alpha/beta hydrolase, ATP 99.11
3loq_A 294 Universal stress protein; structural genomics, PSI 99.08
3mt0_A 290 Uncharacterized protein PA1789; structural genomic 98.99
3mt0_A290 Uncharacterized protein PA1789; structural genomic 98.98
3loq_A294 Universal stress protein; structural genomics, PSI 98.92
3olq_A319 Universal stress protein E; structural genomics, P 98.9
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 98.78
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 98.57
2l69_A134 Rossmann 2X3 fold protein; structural genomics, no 89.44
3inp_A246 D-ribulose-phosphate 3-epimerase; IDP02542, isomer 81.65
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Back     alignment and structure
Probab=99.51  E-value=5.1e-13  Score=93.12  Aligned_cols=118  Identities=12%  Similarity=0.195  Sum_probs=77.8

Q ss_pred             CCcccceEEEEEEeCCcccChhHHhhHhhhcccCCCCEEEEEEEecCCC----CCCCceeeccCCCcc-ccc---HHHHH
Q 036644            1 MTEELCERVVVIQDASRDVNSSAIGGILKNLSLKHGDSLKFLAVLHQVN----NPMGYKIRLDSSSMV-RTN---QKIIE   72 (131)
Q Consensus         1 ~~~~~~r~VvVavD~Ske~S~~Al~WaL~nv~~~~gD~l~llhv~~~~~----~~~~~~~~~~~~~~~-~~~---~~~~~   72 (131)
                      |++. -++|+||+|+| +.|.+||+||++-. .+.|..|+++||.++..    +..++..   .+... ...   .....
T Consensus         1 M~~~-~~~ILv~vD~s-~~s~~al~~a~~la-~~~~a~l~ll~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~   74 (162)
T 1mjh_A            1 MSVM-YKKILYPTDFS-ETAEIALKHVKAFK-TLKAEEVILLHVIDEREIKKRDIFSLLL---GVAGLNKSVEEFENELK   74 (162)
T ss_dssp             --CC-CCEEEEECCSC-HHHHHHHHHHHHTC-CSSCCEEEEEEEEEGGGTC--------------------CHHHHHHHH
T ss_pred             Cccc-cceEEEEeCCC-HHHHHHHHHHHHHH-hhcCCeEEEEEEecCccccccccccccc---cccccccchhhhHHHHH
Confidence            6664 78999999999 67999999999655 67788999999987430    1001110   00000 010   11121


Q ss_pred             HHHHHHHHhhhChHHHHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644           73 EHISRKKEEYQTNVEIEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL  130 (131)
Q Consensus        73 ~~~~~~~~~~~~~~~l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl  130 (131)
                      ++..+..+.     .|+++.+.++..|+++++.+..|+ +.+.|++.|++.++|+|||
T Consensus        75 ~~~~~~~~~-----~l~~~~~~~~~~g~~~~~~v~~G~-~~~~I~~~a~~~~~dlIV~  126 (162)
T 1mjh_A           75 NKLTEEAKN-----KMENIKKELEDVGFKVKDIIVVGI-PHEEIVKIAEDEGVDIIIM  126 (162)
T ss_dssp             HHHHHHHHH-----HHHHHHHHHHHTTCEEEEEEEEEC-HHHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHH-----HHHHHHHHHHHcCCceEEEEcCCC-HHHHHHHHHHHcCCCEEEE
Confidence            222222222     366788888889999999999996 5778999999999999997
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0 Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0 Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Back     alignment and structure
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Back     alignment and structure
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Back     alignment and structure
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Back     alignment and structure
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4 Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene} Back     alignment and structure
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query131
d2gm3a1171 Putative ethylene-responsive protein AT3g01520/F4P 99.78
d1mjha_160 "Hypothetical" protein MJ0577 {Archaeon Methanococ 99.66
d1q77a_138 Hypothetical protein Aq_178 {Aquifex aeolicus [Tax 99.62
d2z3va1135 Hypothetical protein TTHA0895 {Thermus thermophilu 99.53
d1jmva_140 Universal stress protein A, UspA {Haemophilus infl 99.45
d1tq8a_147 Hypothetical protein Rv1636 {Mycobacterium tubercu 99.39
d1np7a2204 Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 83.81
d2flia1217 D-ribulose-5-phosphate 3-epimerase {Streptococcus 82.85
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Putative ethylene-responsive protein AT3g01520/F4P13 7
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.78  E-value=9e-19  Score=123.17  Aligned_cols=114  Identities=16%  Similarity=0.193  Sum_probs=77.0

Q ss_pred             ceEEEEEEeCCcc---------cChhHHhhHhhhcccCCCCE---EEEEEEecCCCCCCCceeeccCCCcccccHHHHHH
Q 036644            6 CERVVVIQDASRD---------VNSSAIGGILKNLSLKHGDS---LKFLAVLHQVNNPMGYKIRLDSSSMVRTNQKIIEE   73 (131)
Q Consensus         6 ~r~VvVavD~Ske---------~S~~Al~WaL~nv~~~~gD~---l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (131)
                      ++||+||||+| +         .|++||+||++++ .+.||+   |+++|+.++....  +....   ... ......++
T Consensus         1 p~ki~vavd~s-~~~~~~~~~~~S~~Al~wal~~~-~~~~~~~~~L~~vhv~~~~~~~--~~~~~---~~~-~~~~~~~~   72 (171)
T d2gm3a1           1 PTKVMVAVNAS-TIKDYPNPSISCKRAFEWTLEKI-VRSNTSDFKILLLHVQVVDEDG--FDDVD---SIY-ASPEDFRD   72 (171)
T ss_dssp             CEEEEEECCBC-SSSCTTCBCHHHHHHHHHHHHHT-TTTCTTSEEEEEEEEEC---------------CCC-CSHHHHHH
T ss_pred             CCEEEEEEcCC-cccCCCCCCHHHHHHHHHHHHHH-HHCCCCCcEEEEEEeccccccc--ccccc---ccc-cCHHHHHH
Confidence            57999999999 4         5999999999999 899984   8888887643221  11111   011 11111111


Q ss_pred             HHHHHHHhhhChHHHHHHHHHHHhcCCeEEEEEEecCCchhHHHHHHHhcCCCEEEe
Q 036644           74 HISRKKEEYQTNVEIEQISKLCQAENIEFEIEVRPGVSLKTVAVRVAKKFKATWIIL  130 (131)
Q Consensus        74 ~~~~~~~~~~~~~~l~~~~~~c~~~~V~~~~~v~~G~~~~~~I~~~a~~~~a~~vVl  130 (131)
                      ...+..+...  .+|+++...|+..++.+++.+..|+ +.+.|+++|++.++|+|||
T Consensus        73 ~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~v~~G~-~~~~I~~~a~~~~~dlIV~  126 (171)
T d2gm3a1          73 MRQSNKAKGL--HLLEFFVNKCHEIGVGCEAWIKTGD-PKDVICQEVKRVRPDFLVV  126 (171)
T ss_dssp             HTTSHHHHHH--HHHHHHHHHHHHHTCEEEEEEEESC-HHHHHHHHHHHHCCSEEEE
T ss_pred             HHHHHHHHHH--HHHHHHHHHHHhcCCceEEEEEeCC-hHHHHHHHHhhcCCcEEEe
Confidence            1111111111  1578899999999999999999996 5779999999999999997
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure