Citrus Sinensis ID: 036659

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
Protein Sequence
KRSGVSSRRFGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIFVELKLLFLPFVNDLEKKVVPNMLKETSRLEQQLTEEQAAPLKVEEAAQLAQMKSNDEIRKLRENLERAQRETEELRKRAEKGGCAIL
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEEEEEEEEEcEEEEEEEccccccccccHHHHHHHHHHHHHccccccEEEEEEEEccccccHHHHHHHHHHHHHHcHHHHHcEEEEEEcccccccccccHHHHHHHccccccccccccccHHHHHHHHccccccccHHHHHHHHHcccEEEEEEcccccHHHcHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEcccEEEEcccccEEEEccEEEEEEccEEEEEEccccccccccHHHHHHHHHHHHHHcccccEEEEEEEEccccccHHHHHHHHHHHHHHcHHHHcEEEEEEEcccccccccccHHHHHHccccHHHHHHHcccccccccccHHHHHHcccHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
krsgvssrrfgapktaplpptiRIQVVLEKVIDTRWVRHAIARLFdfsagskfvgKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTggdeledndeTLEDylgrecpkplkssrlkvpYSILLHFLndfllpwgigrrgilqlcdnrcvlfdnktkDEAKRTEQIWKLLSLVNSVavqndgqpytdDIFVELKLLFlpfvndlekkvvPNMLKETSRLEQQLTEEQAAPLKVEEAAQLAQMKSNDEIRKLRENLERAQRETEELRKRAEKGGCAIL
Flexible Loop (DISEMBL)
krsgvssrrfgapktaplpptiriQVVLEKVIDTRWVRHAIArlfdfsagskfVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRecpkplkssrlkVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIFVELKLLFLPFVNDLEKKVVPNMLKETSRLEQQLTEEQAAPLKVEEAAQLAQMKSNDEIRKLRENLEraqreteelrkraekggcail
Low Complexity Region (SEG)
KRSGVSSRRFGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLvvfsvrsrfsQEEEAALHSWQTLFGKNVFDYMIVVFtggdeledndetledYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIFVELKLLFLPFVNDLEKKVVPNMLKETSRLEQQLTEEQAAPLKVEEAAQLAQMKSNDEIRKLRENLERAQRETEELRKRAEKGGCAIL
Disordered region (IsUnstruct)
*******************PTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIFVELKLLFLPFVNDLEKKVVP*******************************************************************
Disordered Region (DISOPRED)
KRSGVSS*********************EKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIFVE******************************************************************************KGGCAIL
Disordered Region (DISEMBL)
************PKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIFVELKLLFLPFVNDLEKKVVPNMLKETSRLEQQLTEEQAAPLKVEEAAQLAQMKSNDEIRKLRENLER********************
Disordered Region (DISPRO)
***GVSSRRFGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIFVELKLLFLPFVNDLEKKVVPNMLKETSRLEQQLTEEQAAPLKVEEAAQLAQMKSNDEIRKLRENLERAQRETEELRKRAEKGGCAIL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KRSGVSSRRFGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIFVELKLLFLPFVNDLEKKVVPNMLKETSRLEQQLTEEQAAPLKVEEAAQLAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCAIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	300	2.2.26 [Sep-21-2011]
P54120	353	Protein AIG1 OS=Arabidops	no	no	0.586	0.498	0.423	4e-35
O81025	463	Putative protein PHLOEM P	no	no	0.71	0.460	0.352	2e-32
Q8NHV1	300	GTPase IMAP family member	yes	no	0.463	0.463	0.257	9e-12
Q9NUV9	329	GTPase IMAP family member	no	no	0.46	0.419	0.276	1e-08
Q75N62	688	GTPase IMAP family member	no	no	0.393	0.171	0.281	2e-07
Q8K3K9	310	GTPase IMAP family member	no	no	0.46	0.445	0.264	3e-07
Q8K3L6	326	GTPase IMAP family member	no	no	0.62	0.570	0.234	9e-07
Q8BWF2	308	GTPase IMAP family member	no	no	0.486	0.474	0.242	3e-06
Q5FVN6	304	GTPase IMAP family member	no	no	0.403	0.398	0.269	5e-06
Q8WWP7	306	GTPase IMAP family member	no	no	0.406	0.398	0.215	1e-05

>sp|P54120|AIG1_ARATH Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1

 Score =  148 bits (374), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 92/217 (42%), Positives = 121/217 (55%), Gaps = 41/217 (18%)

Query: 1   KRSGVSSRRFGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVT 60
           K SGV+          P  P +        VIDT         LFD S  ++F+GKEIV 
Sbjct: 73  KSSGVTMECHAVKAVTPEGPILN-------VIDTPG-------LFDLSVSAEFIGKEIVK 118

Query: 61  CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDELEDNDE 120
           C+ +A  G+HAVL+V SVR+R SQEEE  L + Q LFG  + DY+IVVFTGGD LED+  
Sbjct: 119 CLTLADGGLHAVLLVLSVRTRISQEEEMVLSTLQVLFGSKIVDYLIVVFTGGDVLEDDGM 178

Query: 121 TLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTK 180
           TLEDYLG   P                    DFL       + +L LC  R +LFDNKTK
Sbjct: 179 TLEDYLGDNMP--------------------DFL-------KRVLILCGQRMILFDNKTK 211

Query: 181 DEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIFVELK 217
           D+ K+T+Q+ +LL L++ V  QN+  PYTD+++  +K
Sbjct: 212 DDEKKTKQVHELLKLIDLVRKQNNNIPYTDEMYHMIK 248

Arabidopsis thaliana (taxid: 3702)

>sp|O81025|P2A03_ARATH Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabidopsis thaliana GN=PP2A3 PE=4 SV=1

 Score =  139 bits (350), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/247 (35%), Positives = 131/247 (53%), Gaps = 34/247 (13%)

Query: 54  VGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGD 113
           +  EI+ C+ MA++GIHAVL+V S R R S+EEE+ +++ Q +FG  + DY IVVFTGGD
Sbjct: 75  ISNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQILDYCIVVFTGGD 134

Query: 114 ELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCV 173
           +LE++D+TL+DY    CP+ L                             +L+LC  R V
Sbjct: 135 DLEEDDQTLDDYFRAGCPEFLTK---------------------------VLRLCGGRKV 167

Query: 174 LFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIFVELKLLFLPFVNDLEKKVVP 233
           LFDNK+KDE K+ EQ+ +LL+ V +V  Q  G PYT  +  ++K       ND   +   
Sbjct: 168 LFDNKSKDEKKKVEQVKQLLARVENVGEQTGGIPYTYQLHRKIK-----EENDERLREEE 222

Query: 234 NMLKETSRLEQQLTEEQAAPLKVEEAAQLAQMKSNDEIRKLRENLERAQRETEELRKRAE 293
            +++  +R E +L E Q   L  +E  Q+ + K+   I +   N      E E  + RAE
Sbjct: 223 RVIESKNRAEAELAEMQQNLLMEKEKLQMEEAKNKQLIAQAEAN--EKLMEQERAKNRAE 280

Query: 294 KGGCAIL 300
               A++
Sbjct: 281 TELAAVM 287

Arabidopsis thaliana (taxid: 3702)

>sp|Q8NHV1|GIMA7_HUMAN GTPase IMAP family member 7 OS=Homo sapiens GN=GIMAP7 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 32/171 (18%)

Query: 44  LFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD 103
           LFD         KEI  CI  +  G HA+++V  +  R+++EE+  +   + +FGK+   
Sbjct: 67  LFDTKESLDTTCKEISRCIISSCPGPHAIVLVL-LLGRYTEEEQKTVALIKAVFGKSAMK 125

Query: 104 YMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRG 163
           +M+++FT  +ELE                                  +DF+    +G + 
Sbjct: 126 HMVILFTRKEELEGQS------------------------------FHDFIADADVGLKS 155

Query: 164 ILQLCDNRCVLFDNKTK-DEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIF 213
           I++ C NRC  F N  K  +A++  Q+ +L+ L+  +   N+G  ++DDI+
Sbjct: 156 IVKECGNRCCAFSNSKKTSKAEKESQVQELVELIEKMVQCNEGAYFSDDIY 206

Homo sapiens (taxid: 9606)

>sp|Q9NUV9|GIMA4_HUMAN GTPase IMAP family member 4 OS=Homo sapiens GN=GIMAP4 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 32/170 (18%)

Query: 44  LFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD 103
           +FD    +    KEI+ CI +   G HA+L+V  +  R+++EE  A      +FG+    
Sbjct: 89  IFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKMFGERARS 147

Query: 104 YMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRG 163
           +MI++FT  D+L D +  L DYL RE P+ ++                D +  +G     
Sbjct: 148 FMILIFTRKDDLGDTN--LHDYL-REAPEDIQ----------------DLMDIFG----- 183

Query: 164 ILQLCDNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIF 213
                D  C L +  T   A++  Q  +LL L+  V  +N    YT+ ++
Sbjct: 184 -----DRYCALNNKATG--AEQEAQRAQLLGLIQRVVRENKEGCYTNRMY 226

May play a role in regulating lymphocyte apoptosis (By similarity). Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium.

Homo sapiens (taxid: 9606)

>sp|Q75N62|GIMA8_MOUSE GTPase IMAP family member 8 OS=Mus musculus GN=Gimap8 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 31/149 (20%)

Query: 56  KEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDEL 115
           +EI  C+ + ++G+   ++V  +  RF+QE+E  +   +  F +N+  YMIV+FT  ++L
Sbjct: 549 EEIHHCLSLCEEGMKIFVLVLQL-GRFTQEDEVVVEQLEASFEENIMKYMIVLFTRKEDL 607

Query: 116 EDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLF 175
            D D  L DY      K LK                            IL+ C+ R   F
Sbjct: 608 GDGD--LHDYTNNTKNKALKK---------------------------ILKKCNGRVCAF 638

Query: 176 DNKTKDEAKRTEQIWKLLSLVNSVAVQND 204
           +NK   E + T Q+  LL + NS+    D
Sbjct: 639 NNKETGEDQET-QVKGLLKIANSLKKNYD 666

Exerts an anti-apoptotic effect in the immune system and is involved in responses to infections.

Mus musculus (taxid: 10090)

>sp|Q8K3K9|GIMA4_RAT GTPase IMAP family member 4 OS=Rattus norvegicus GN=Gimap4 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 32/170 (18%)

Query: 44  LFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD 103
           +FD         KEI  C+ +   G HA+L+V  +   ++ EE  A     ++F K    
Sbjct: 89  IFDTEVPDADTQKEITRCVALTSPGPHALLLVIPLGC-YTVEEHKATRKLLSMFEKKARR 147

Query: 104 YMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRG 163
           +MI++ T  D+LED D  + +Y             L+    +L   + +F          
Sbjct: 148 FMILLLTRKDDLEDTD--IHEY-------------LETAPEVLQELIYEF---------- 182

Query: 164 ILQLCDNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIF 213
                 NR  LF+NK    A++ EQ  +LL+LV S+  +N G+ +T+ ++
Sbjct: 183 -----RNRYCLFNNKASG-AEQEEQKRQLLTLVQSMVRENGGKYFTNKMY 226

May play a role in regulating lymphocyte apoptosis. Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium.

Rattus norvegicus (taxid: 10116)

>sp|Q8K3L6|GIMA5_RAT GTPase IMAP family member 5 OS=Rattus norvegicus GN=Gimap5 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 106/222 (47%), Gaps = 36/222 (16%)

Query: 44  LFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD 103
           +F+    ++ + K+I  C  M   G H +L+V  +  R++ E+  A+   + +FG  V  
Sbjct: 103 IFESKIQNQDMDKDIGNCYLMCAPGPHVLLLVTQL-GRYTVEDAMAVRMVKQIFGVGVMR 161

Query: 104 YMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRG 163
           YMIV+FT  ++L   DE+LE+++                 ++ LH L             
Sbjct: 162 YMIVLFTHKEDLA--DESLEEFVTH-------------TGNLDLHRL------------- 193

Query: 164 ILQLCDNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIFVELKLLFLPF 223
            +Q C  R   F+NK   E ++  Q+ +L++LV  +  +++G  +++D+FV  ++     
Sbjct: 194 -VQECGRRYCAFNNKASGEEQQG-QLAELMALVRRLEQEHEGSFHSNDLFVYTQVFLRGG 251

Query: 224 VNDLEKKVVPNMLKETSRLEQQLTEEQAAPLKVEEAAQLAQM 265
            ++ ++     + K      +Q  E+Q   L+ +E + +A+M
Sbjct: 252 YSEHQEPYKFYLTK-----VRQEVEKQKRELEEQEGSWMAKM 288

Required for mitochondrial integrity and T-cell survival. May contribute to T-cell quiescence.

Rattus norvegicus (taxid: 10116)

>sp|Q8BWF2|GIMA5_MOUSE GTPase IMAP family member 5 OS=Mus musculus GN=Gimap5 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 86/177 (48%), Gaps = 31/177 (17%)

Query: 44  LFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD 103
           +F+  A ++ + K+I  C  +   G H +L+V  +  RF+ E+  A+   + +FG  V  
Sbjct: 85  IFESKAQNQDMDKDIGDCYLLCAPGPHVLLLVTQL-GRFTAEDAMAVRMVKEVFGVGVMR 143

Query: 104 YMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRG 163
           +MIV+FT  ++LE  +++LE++                    + H  N  L       R 
Sbjct: 144 HMIVLFTRKEDLE--EKSLEEF--------------------VTHTDNRSL-------RS 174

Query: 164 ILQLCDNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIFVELKLLF 220
           + Q C  R   F+N+   E ++  Q+ +L++LV  +  + +G  +++D+F+  + L 
Sbjct: 175 LTQECGRRYCAFNNRASGEEQQG-QLAELMALVRRLEQECEGSFHSNDLFLHAEALL 230

Required for mitochondrial integrity and T-cell survival. May contribute to T-cell quiescence.

Mus musculus (taxid: 10090)

>sp|Q5FVN6|GIMA6_RAT GTPase IMAP family member 6 OS=Rattus norvegicus GN=Gimap6 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 31/152 (20%)

Query: 61  CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDELEDNDE 120
           C  +A  G HAVL+V  V  R++ E++ A    Q +FG  +  Y I+VFT  +EL +   
Sbjct: 176 CDILASPGPHAVLLVIQV-GRYTTEDQEAARCLQEIFGNGILAYTILVFTRKEELAEG-- 232

Query: 121 TLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTK 180
           +LE+Y+     K L +  L V                          C+ R   F+N+ +
Sbjct: 233 SLEEYIKENNNKTLDA--LDV-------------------------ACERRHCGFNNRAQ 265

Query: 181 DEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDI 212
            + +   Q+ KL+  + S+  +N+G  YT ++
Sbjct: 266 GDEQEA-QLQKLMEEIESILWENEGHCYTMEL 296

Rattus norvegicus (taxid: 10116)

>sp|Q8WWP7|GIMA1_HUMAN GTPase IMAP family member 1 OS=Homo sapiens GN=GIMAP1 PE=1 SV=1

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 71/153 (46%), Gaps = 31/153 (20%)

Query: 61  CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDELEDNDE 120
           C  ++  G HA+L+V  +  RF+ +++ A+   + +FG++V  +M++VFT  ++L     
Sbjct: 104 CYLLSAPGPHALLLVTQL-GRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGG-- 160

Query: 121 TLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTK 180
           +L DY+     + L                           R ++  C  R   FDN+  
Sbjct: 161 SLHDYVSNTENRAL---------------------------RELVAECGGRVCAFDNRAT 193

Query: 181 DEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIF 213
              +   Q+ +LL +V  + +++ G  Y+++++
Sbjct: 194 GREQEA-QVEQLLGMVEGLVLEHKGAHYSNEVY 225

May regulate lymphocyte survival. Required for normal levels of mature T-lymphocytes and mature B-cells.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
225460273	340	PREDICTED: protein AIG1 [Vitis vinifera]	0.853	0.752	0.565	6e-83
296089429	345	unnamed protein product [Vitis vinifera]	0.853	0.742	0.565	7e-83
255539412	339	aig1, putative [Ricinus communis] gi|223	0.85	0.752	0.552	4e-81
356526433	350	PREDICTED: protein AIG1-like [Glycine ma	0.753	0.645	0.553	3e-72
363814318	336	uncharacterized protein LOC100807910 [Gl	0.753	0.672	0.546	3e-72
224146305	335	predicted protein [Populus trichocarpa]	0.833	0.746	0.510	1e-70
449464872	341	PREDICTED: protein AIG1-like [Cucumis sa	0.756	0.665	0.557	1e-69
4097585	344	NTGP4, partial [Nicotiana tabacum]	0.866	0.755	0.480	1e-65
388500386	335	unknown [Lotus japonicus]	0.753	0.674	0.512	3e-65
357470409	346	AIG1 [Medicago truncatula] gi|355506544|	0.756	0.656	0.529	9e-65

>gi|225460273|ref|XP_002281996.1| PREDICTED: protein AIG1 [Vitis vinifera]

 Score =  313 bits (802), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 182/322 (56%), Positives = 207/322 (64%), Gaps = 66/322 (20%)

Query: 11  GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIH 70
           G   T  L  TI     +  VIDT         LFD SA S FVGKEIV CI +AKDG+H
Sbjct: 53  GVTSTCELQRTILRDGQIVNVIDTPG-------LFDLSAESDFVGKEIVKCIDLAKDGVH 105

Query: 71  AVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGREC 130
           AVLVVFSVR+RFS+EEEAALHS QTLFG  + DYMIVVFTGGDELEDNDETLEDYLGREC
Sbjct: 106 AVLVVFSVRTRFSKEEEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDETLEDYLGREC 165

Query: 131 PKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTKDEAKRTEQIW 190
           P+PLK + L                           LC NR VLFDNKTKDEAK+ EQ+ 
Sbjct: 166 PEPLKQTLL---------------------------LCQNRLVLFDNKTKDEAKKYEQVQ 198

Query: 191 KLLSLVNSVAVQNDGQPYTDDIFVELK-----------------------LLFL------ 221
           KLLSLVNSV +QN GQPYTD++F+ELK                       +L L      
Sbjct: 199 KLLSLVNSVILQNGGQPYTDELFMELKKGAQKLRDQTEEVDSLEGYSKREILVLKEQMHK 258

Query: 222 PFVNDLEK--KVVPNMLKETS-RLEQQLTEEQAAPLKVEEAAQLAQMKSNDEIRKLRENL 278
            +   L++  ++V   L+ET+ +LE+QL EEQAA LK EE AQ AQ+ SNDEIRKLRENL
Sbjct: 259 SYEEQLKRITEMVEVKLRETTMKLERQLAEEQAARLKAEEIAQRAQLASNDEIRKLRENL 318

Query: 279 ERAQRETEELRKRAEKGGCAIL 300
           ERAQRETEELRKRAE G CAIL
Sbjct: 319 ERAQRETEELRKRAESGKCAIL 340

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089429|emb|CBI39248.3| unnamed protein product [Vitis vinifera]

 Score =  313 bits (801), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 182/322 (56%), Positives = 207/322 (64%), Gaps = 66/322 (20%)

Query: 11  GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIH 70
           G   T  L  TI     +  VIDT         LFD SA S FVGKEIV CI +AKDG+H
Sbjct: 58  GVTSTCELQRTILRDGQIVNVIDTPG-------LFDLSAESDFVGKEIVKCIDLAKDGVH 110

Query: 71  AVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGREC 130
           AVLVVFSVR+RFS+EEEAALHS QTLFG  + DYMIVVFTGGDELEDNDETLEDYLGREC
Sbjct: 111 AVLVVFSVRTRFSKEEEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDETLEDYLGREC 170

Query: 131 PKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTKDEAKRTEQIW 190
           P+PLK + L                           LC NR VLFDNKTKDEAK+ EQ+ 
Sbjct: 171 PEPLKQTLL---------------------------LCQNRLVLFDNKTKDEAKKYEQVQ 203

Query: 191 KLLSLVNSVAVQNDGQPYTDDIFVELK-----------------------LLFL------ 221
           KLLSLVNSV +QN GQPYTD++F+ELK                       +L L      
Sbjct: 204 KLLSLVNSVILQNGGQPYTDELFMELKKGAQKLRDQTEEVDSLEGYSKREILVLKEQMHK 263

Query: 222 PFVNDLEK--KVVPNMLKETS-RLEQQLTEEQAAPLKVEEAAQLAQMKSNDEIRKLRENL 278
            +   L++  ++V   L+ET+ +LE+QL EEQAA LK EE AQ AQ+ SNDEIRKLRENL
Sbjct: 264 SYEEQLKRITEMVEVKLRETTMKLERQLAEEQAARLKAEEIAQRAQLASNDEIRKLRENL 323

Query: 279 ERAQRETEELRKRAEKGGCAIL 300
           ERAQRETEELRKRAE G CAIL
Sbjct: 324 ERAQRETEELRKRAESGKCAIL 345

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539412|ref|XP_002510771.1| aig1, putative [Ricinus communis] gi|223551472|gb|EEF52958.1| aig1, putative [Ricinus communis]

 Score =  307 bits (786), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 178/322 (55%), Positives = 203/322 (63%), Gaps = 67/322 (20%)

Query: 11  GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIH 70
           G   T  L  T+     +  V+DT         LFDFSA S+FVGKEIV CI MAKDGIH
Sbjct: 53  GVTSTCELQQTVITDGQVINVVDTPG-------LFDFSAESEFVGKEIVKCINMAKDGIH 105

Query: 71  AVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGREC 130
           AVLVVFSVR+RFSQEEEAAL S QTLFG  +FDYMIVVFTGGDELEDNDETLEDYLGREC
Sbjct: 106 AVLVVFSVRTRFSQEEEAALRSLQTLFGSKIFDYMIVVFTGGDELEDNDETLEDYLGREC 165

Query: 131 PKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTKDEAKRTEQIW 190
           P+PL+                            IL LC NR VLFDNKTKDE KR EQ+ 
Sbjct: 166 PQPLQE---------------------------ILTLCKNRLVLFDNKTKDEFKRAEQVH 198

Query: 191 KLLSLVNSVAVQNDGQPYTDDIFVELKLLFLPFVNDLEK--------------------- 229
           +LLSLVN V  +N GQPYTD++FVELK   +   +  E+                     
Sbjct: 199 QLLSLVNLVIAENGGQPYTDELFVELKARAIKLRDQQEEVDSLKGYSKGEILELKEQMHR 258

Query: 230 ----------KVVPNMLKETS-RLEQQLTEEQAAPLKVEEAAQLAQMKSNDEIRKLRENL 278
                     ++V   L+ET+ RLEQQL EEQAA LK EE AQLAQMKSNDEIR+LRENL
Sbjct: 259 SYEEQLKRITEMVELKLRETTNRLEQQLAEEQAARLKAEEKAQLAQMKSNDEIRQLRENL 318

Query: 279 ERAQRETEELRKRAEKGGCAIL 300
           ERAQ+ET+ELR++AE   C IL
Sbjct: 319 ERAQKETQELRRQAE-SRCNIL 339

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526433|ref|XP_003531822.1| PREDICTED: protein AIG1-like [Glycine max]

 Score =  278 bits (710), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 160/289 (55%), Positives = 186/289 (64%), Gaps = 63/289 (21%)

Query: 44  LFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD 103
           LFD SAGS+FVGKEIV CI +AKDGIHAV+VVFSVR+RF++EEE AL S QTLFG  + D
Sbjct: 93  LFDLSAGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEEEETALRSLQTLFGSKIVD 152

Query: 104 YMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRG 163
           YMIVVFTGGDELE+NDETLEDYLGRECP+PLK                            
Sbjct: 153 YMIVVFTGGDELEENDETLEDYLGRECPEPLKE--------------------------- 185

Query: 164 ILQLCDNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIFVELKLLFLPF 223
           IL LC+NRCVLFDNKTKDE KR  Q+ +LLS VN V  +N G+PYTD++F +LK   +  
Sbjct: 186 ILVLCENRCVLFDNKTKDEGKRFGQVQQLLSFVNMVLSRNGGRPYTDELFTQLKKGAMEL 245

Query: 224 VND---------------LEKK----------------VVPNMLKE-TSRLEQQLTEEQA 251
            N                LE K                +V + L+E T RLE+QL EEQA
Sbjct: 246 HNQQREVDSLKGYSKGEILEFKKQMQQTYDEQLKRITEMVESKLREATMRLEEQLAEEQA 305

Query: 252 APLKVEEAAQLAQMKSNDEIRKLRENLERAQRETEELRKRAEKGGCAIL 300
           A LK EE A LAQM+S+DEIRKLRE+LE+A    EELRKR   GGCAIL
Sbjct: 306 ARLKAEENAMLAQMRSDDEIRKLREHLEKAH---EELRKRG-GGGCAIL 350

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814318|ref|NP_001242800.1| uncharacterized protein LOC100807910 [Glycine max] gi|255639255|gb|ACU19926.1| unknown [Glycine max]

 Score =  277 bits (709), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 158/289 (54%), Positives = 186/289 (64%), Gaps = 63/289 (21%)

Query: 44  LFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD 103
           LFD S GS+FVGKEIV CI +AKDGIHAV+VVFSVR+RF++EEE AL S QTLFG  + D
Sbjct: 79  LFDLSVGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEEEETALRSLQTLFGSKIVD 138

Query: 104 YMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRG 163
           YMIVVFTGGDELE+N ETLEDYLGRECP+PLK                            
Sbjct: 139 YMIVVFTGGDELEENAETLEDYLGRECPEPLKE--------------------------- 171

Query: 164 ILQLCDNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIFVELKLL---- 219
           IL LCDNRCVLFDNKTKDE KR  Q+ +LLS VN+V  +N G+PYTD++F +LK      
Sbjct: 172 ILVLCDNRCVLFDNKTKDEGKRFGQVQQLLSFVNTVLSRNGGRPYTDELFTQLKKGAMEL 231

Query: 220 -----------------FLPFVNDLEK----------KVVPNMLKE-TSRLEQQLTEEQA 251
                             L F   +++          ++V + L+E T RLEQQL EEQA
Sbjct: 232 HNQQREVDSLKGYSKGEILKFKKQMQQTYDDQLKRITEIVESKLREATMRLEQQLVEEQA 291

Query: 252 APLKVEEAAQLAQMKSNDEIRKLRENLERAQRETEELRKRAEKGGCAIL 300
           A LK EE A LAQM+S+DEIRKLRE+LE+A    EELRKR E G CAIL
Sbjct: 292 ARLKAEENAMLAQMRSDDEIRKLREHLEKAH---EELRKRGE-GRCAIL 336

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146305|ref|XP_002325957.1| predicted protein [Populus trichocarpa] gi|222862832|gb|EEF00339.1| predicted protein [Populus trichocarpa]

 Score =  272 bits (696), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 165/323 (51%), Positives = 198/323 (61%), Gaps = 73/323 (22%)

Query: 11  GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIH 70
           G   +  L  T+     +  VIDT         LFDFSAGS+FVG+EIV CI MAKDGIH
Sbjct: 53  GVTSSCELQRTVLRDGQIINVIDTPG-------LFDFSAGSEFVGREIVKCINMAKDGIH 105

Query: 71  AVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGREC 130
           AVLVVFSVR+RFSQEEEAAL S QTLFG  + DYMIVVFTGGDELEDNDETLEDYLGREC
Sbjct: 106 AVLVVFSVRTRFSQEEEAALRSLQTLFGSKILDYMIVVFTGGDELEDNDETLEDYLGREC 165

Query: 131 PKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTKDEAKRTEQIW 190
           P+PLK                            +L LC+NR VLF+NKTKD  K  EQ+ 
Sbjct: 166 PQPLKE---------------------------VLTLCENRRVLFNNKTKDVLKGVEQVQ 198

Query: 191 KLLSLVNSVAVQNDGQPYTDDIFVELKLLFLPF------------------VNDLEKKV- 231
           +LLSLVN V  QN GQPY+D++F E++   + F                  +++L++++ 
Sbjct: 199 ELLSLVNRVIEQNGGQPYSDELFAEIQKGEMNFRGQQEEVDSLKGNFSIGEISELQEQMK 258

Query: 232 ---------VPNM----LKE-TSRLEQQLTEEQAAPLKVEEAAQLAQMKSNDEIRKLREN 277
                    V +M    LKE T  LE++L EEQAA L+ EE+AQL Q KSN+EIR LRE 
Sbjct: 259 RQYEDQLKRVTDMVEMKLKEATGNLERRLAEEQAARLRAEESAQLEQRKSNEEIRMLRER 318

Query: 278 LERAQRETEELRKRAEKGGCAIL 300
           LE+A    EELR    KGGCAIL
Sbjct: 319 LEKAH---EELRN---KGGCAIL 335

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464872|ref|XP_004150153.1| PREDICTED: protein AIG1-like [Cucumis sativus] gi|449520867|ref|XP_004167454.1| PREDICTED: protein AIG1-like [Cucumis sativus]

 Score =  269 bits (687), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 161/289 (55%), Positives = 186/289 (64%), Gaps = 62/289 (21%)

Query: 44  LFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD 103
           +FDFSAGS FVGKEIV CI MAKDGIHAVLVVFSVR+RFS EEEAAL S QTLFG  + +
Sbjct: 83  MFDFSAGSDFVGKEIVKCIDMAKDGIHAVLVVFSVRTRFSLEEEAALRSLQTLFGSKIVN 142

Query: 104 YMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRG 163
           YMIVVFTGGDELE+N+ETLEDYLGR CP PLK                            
Sbjct: 143 YMIVVFTGGDELEENEETLEDYLGRSCPDPLKD--------------------------- 175

Query: 164 ILQLCDNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIFVELKLLFLPF 223
           IL LC NRCVLFDNKTKDE ++  Q+ +LLSLVN + +QN GQPY+D++F ELK   +  
Sbjct: 176 ILALCQNRCVLFDNKTKDEGRKVGQVQQLLSLVNGIVMQNGGQPYSDELFSELKAGAMKL 235

Query: 224 ------VNDLE-------------------------KKVVPNMLKETS-RLEQQLTEEQA 251
                 V+ LE                          ++V + L+ET+ RLEQQL EEQA
Sbjct: 236 RDQQKEVDSLEGYTRQELKELKEQMHRSYDEQLKRITEMVESKLRETTMRLEQQLAEEQA 295

Query: 252 APLKVEEAAQLAQMKSNDEIRKLRENLERAQRETEELRKRAEKGGCAIL 300
           A LK EE AQ AQ KSNDEIR+LRE+L+RAQ   EELRKR E   CAIL
Sbjct: 296 ARLKAEENAQHAQRKSNDEIRQLREHLQRAQ---EELRKRGESSNCAIL 341

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4097585|gb|AAD09518.1| NTGP4, partial [Nicotiana tabacum]

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 157/327 (48%), Positives = 194/327 (59%), Gaps = 67/327 (20%)

Query: 7   SRRFGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAK 66
           S   G   T  L  T+     +  VIDT         LFDFSA  +F+G EIV CI MAK
Sbjct: 52  SSSAGVTSTCELQRTVLEDGQILDVIDTPG-------LFDFSAEPEFIGNEIVKCINMAK 104

Query: 67  DGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYL 126
           DGIHAVLVV SVR+RFS+EE+AA+ S +  FG  + DYM++VFTGGD+LEDN+ETLEDYL
Sbjct: 105 DGIHAVLVVLSVRTRFSREEQAAVQSLREFFGGKISDYMVLVFTGGDDLEDNEETLEDYL 164

Query: 127 GRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTKDEAKRT 186
           GR+CP+PLK                            IL +C NR VLFDNK+KD  K+ 
Sbjct: 165 GRDCPEPLKD---------------------------ILAMCGNRRVLFDNKSKDHLKKA 197

Query: 187 EQIWKLLSLVNSVAVQNDGQPYTDDIFVELKLLFLPFVND---------------LEKK- 230
           +Q+ +LLSLVN V   N G+PYTDD+F ELK   +   N                LE K 
Sbjct: 198 DQLKQLLSLVNVVVENNGGKPYTDDLFKELKKGAIKLRNQATEVNNLVGYSKQEILELKE 257

Query: 231 ---------------VVPNMLKETS-RLEQQLTEEQAAPLKVEEAAQLAQMKSNDEIRKL 274
                          VV + LK+T+ RLE+QL +EQAA L+ E +A+ AQ KS++EIRKL
Sbjct: 258 QMQKSYEEQLRRITEVVESKLKDTTHRLEEQLAKEQAARLEAELSAKEAQKKSDNEIRKL 317

Query: 275 RENLERAQRETEELRKR-AEKGGCAIL 300
           RE LERAQRETEELR R A++G C IL
Sbjct: 318 REYLERAQRETEELRGRSADRGVCNIL 344

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500386|gb|AFK38259.1| unknown [Lotus japonicus]

 Score =  254 bits (649), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 148/289 (51%), Positives = 177/289 (61%), Gaps = 63/289 (21%)

Query: 44  LFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD 103
           LFD SAGS FVGKEIV CI +AKDGIHA++VVFSVR+RFSQEE  AL S QTLFG  ++D
Sbjct: 78  LFDISAGSDFVGKEIVNCINLAKDGIHAIIVVFSVRTRFSQEEATALRSLQTLFGDKIYD 137

Query: 104 YMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRG 163
           Y +VVFTGGDELE+ D+TLEDYLG +CP+PLK                            
Sbjct: 138 YTVVVFTGGDELEEEDQTLEDYLGCDCPEPLKD--------------------------- 170

Query: 164 ILQLCDNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIFVELKLLFLPF 223
           +L LC+NR +LFDNKTKDE KR+EQ+ +L S VN V  QN G+PYTDD+F ELK   L  
Sbjct: 171 LLSLCENRRLLFDNKTKDERKRSEQVQQLFSFVNMVLSQNGGRPYTDDLFAELKKGALKL 230

Query: 224 ------VNDLE--------------KKVVPNMLKE------------TSRLEQQLTEEQA 251
                 VN LE              K+   + LK             T RLEQQL +EQA
Sbjct: 231 HNQQSQVNSLEGHSNKEILEYKKQAKQAYDDQLKRIAEMVESKLRDATLRLEQQLAKEQA 290

Query: 252 APLKVEEAAQLAQMKSNDEIRKLRENLERAQRETEELRKRAEKGGCAIL 300
           A LK EE A LA+++S+ EIR+LR++LERA    EELRK  E   C IL
Sbjct: 291 ARLKAEENANLARVRSDKEIRELRKHLERAH---EELRKHGEN-RCGIL 335

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357470409|ref|XP_003605489.1| AIG1 [Medicago truncatula] gi|355506544|gb|AES87686.1| AIG1 [Medicago truncatula]

 Score =  253 bits (645), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 153/289 (52%), Positives = 191/289 (66%), Gaps = 62/289 (21%)

Query: 44  LFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD 103
           LF+ SAGS+F+GKEIV CI  AKDGIHA+LVV SVRSRFS+EEE AL S QTLFG  + D
Sbjct: 88  LFEVSAGSEFIGKEIVKCIDFAKDGIHAILVVLSVRSRFSEEEENALRSLQTLFGSKIVD 147

Query: 104 YMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRG 163
           YMIVVFTGGDELED+++TL+DYLGRECP+ LK                            
Sbjct: 148 YMIVVFTGGDELEDDEDTLDDYLGRECPESLKQ--------------------------- 180

Query: 164 ILQLCDNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIFVELKLLFLPF 223
           IL LC NRCVLFDNKTKDE KR+ Q+ +LLS VN + +QN GQPYTD++F ELK   +  
Sbjct: 181 ILSLCGNRCVLFDNKTKDEKKRSGQVQQLLSFVNLIVLQNGGQPYTDELFAELKKGAMKL 240

Query: 224 -----------------VNDLEK--------------KVVPNMLKE-TSRLEQQLTEEQA 251
                            +++L+K              +++ + LKE T+RLE+QL EEQA
Sbjct: 241 HREQRKVDSLEGYSEGQISELKKHMQQTYEEQLKHITEMIESKLKEATTRLEKQLAEEQA 300

Query: 252 APLKVEEAAQLAQMKSNDEIRKLRENLERAQRETEELRKRAEKGGCAIL 300
           A L+ E++A+LAQ KS+DEIRKLR++LE+A    EELRKR +KGGCAIL
Sbjct: 301 ARLRAEDSAKLAQKKSDDEIRKLRKHLEKAH---EELRKRGDKGGCAIL 346

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
TAIR|locus:2009041	342	AT1G33970 [Arabidopsis thalian	0.426	0.374	0.365	8e-31
TAIR|locus:2203817	311	AT1G33950 [Arabidopsis thalian	0.306	0.295	0.402	2e-25
TAIR|locus:2203807	353	AIG1 "AVRRPT2-INDUCED GENE 1"	0.306	0.260	0.413	1.2e-24
TAIR|locus:2203802	334	AT1G33890 [Arabidopsis thalian	0.42	0.377	0.320	1.7e-23
TAIR|locus:2203797	326	AT1G33900 [Arabidopsis thalian	0.31	0.285	0.344	1.2e-21
TAIR|locus:2039528	463	PP2-A3 "phloem protein 2-A3" [	0.433	0.280	0.335	1.4e-20
TAIR|locus:2203832	336	AT1G33930 [Arabidopsis thalian	0.31	0.276	0.387	6.4e-20
TAIR|locus:2203792	301	AT1G33910 [Arabidopsis thalian	0.31	0.308	0.354	8.1e-20
TAIR|locus:2203827	252	AT1G33870 [Arabidopsis thalian	0.296	0.353	0.337	1.9e-19
TAIR|locus:2012678	225	AT1G33830 [Arabidopsis thalian	0.296	0.395	0.325	1.7e-18

TAIR|locus:2009041 AT1G33970 [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 8.0e-31, Sum P(2) = 8.0e-31
 Identities = 49/134 (36%), Positives = 78/134 (58%)

Query:   164 ILQLCDNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIFVELKLLFLPF 223
             IL +CDNR VLF+NKT D+ K+ EQ+ KLLSLV SV  QN+G+PY+D++F EL+   +  
Sbjct:   176 ILGICDNRLVLFNNKTTDKVKKAEQVQKLLSLVESVVKQNNGKPYSDELFHELQEEAIK- 234

Query:   224 VNDLEKKVVPNMLKETSRLEQQLTEEQ---AAPLKVEEAAQLAQMKSNDEIRKLRENLER 280
             + D +K+V   +L+  S  E    ++Q   +   ++    ++ + K  D  ++L + L  
Sbjct:   235 LRDQKKEV--ELLQGYSNNEIDEFKKQIDMSYDRQLSRITEMVETKLRDTAKRLEQQLGE 292

Query:   281 AQRETEELRKRAEK 294
              Q    E  KRA +
Sbjct:   293 EQAARLEAEKRANE 306

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203817 AT1G33950 [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 2.0e-25, Sum P(2) = 2.0e-25
 Identities = 37/92 (40%), Positives = 50/92 (54%)

Query:    44 LFDFSAGSKFVGKEIVTCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSWQTLFGKNVFD 103
             LFD S  ++++ KEIV C+ +A+ GIHAVL          QEEE  L + Q LFG  + D
Sbjct:    76 LFDLSVSAEYISKEIVRCLTLAEGGIHAVLLVLSARTRITQEEENTLRTLQALFGSQILD 135

Query:   104 YMIVVFXXXXXXXXXXXXXXXYLGRECPKPLK 135
             Y++VVF               YLGR+CP  +K
Sbjct:   136 YVVVVFTGGDVLEECKETLEDYLGRDCPTFIK 167

GO:0005525 "GTP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2203807 AIG1 "AVRRPT2-INDUCED GENE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
 Identities = 38/92 (41%), Positives = 47/92 (51%)

Query:    44 LFDFSAGSKFVGKEIVTCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSWQTLFGKNVFD 103
             LFD S  ++F+GKEIV C+ +A  G+HAVL          QEEE  L + Q LFG  + D
Sbjct:   102 LFDLSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLSTLQVLFGSKIVD 161

Query:   104 YMIVVFXXXXXXXXXXXXXXXYLGRECPKPLK 135
             Y+IVVF               YLG   P  LK
Sbjct:   162 YLIVVFTGGDVLEDDGMTLEDYLGDNMPDFLK 193

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=IEP;ISS

GO:0006897 "endocytosis" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2203802 AT1G33890 [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
 Identities = 43/134 (32%), Positives = 79/134 (58%)

Query:   164 ILQLCDNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIFVELKLLFLPF 223
             +L LCD+R V+F+N TKD+ K+ EQ+ + L+LV  V  +N+G+P+   +++E+K     +
Sbjct:   166 VLGLCDDRKVMFNNMTKDKHKKVEQVQQFLALVAKVEERNEGKPFRGKMYLEIKEE-TEW 224

Query:   224 VNDLEKKVVPNMLKET--SRLEQQLTEEQAAPL-KVEEAAQ--LAQMKSNDE--IRKLRE 276
             +   +K V  + L E   ++++++L  E    + ++E+  +  L +  +  E  +  L E
Sbjct:   225 LKKQKKAVEASNLGEAELAKMKKELQMEHDTRMSQMEDMVKNMLKETSAAHERMVSMLNE 284

Query:   277 NLERAQRETEELRK 290
             NLE A RE  +LRK
Sbjct:   285 NLENAHRENIDLRK 298

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203797 AT1G33900 [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
 Identities = 32/93 (34%), Positives = 53/93 (56%)

Query:    44 LFDFSAGSKFVGKEIVTCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSWQTLFGKNVFD 103
             LFD S  ++++ +EI+ C+ +A+DG+HAV+          QEEEA L++ Q +FG  + D
Sbjct:    79 LFDLSVSAEYLSQEIINCLVLAEDGLHAVVLVLSVRTRISQEEEATLNTLQVIFGSQIID 138

Query:   104 YMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKS 136
             Y++V+F               YL + CP+ LK+
Sbjct:   139 YLVVLFTGGDELEANNMTLDDYLSKGCPEFLKT 171

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2039528 PP2-A3 "phloem protein 2-A3" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
 Identities = 46/137 (33%), Positives = 72/137 (52%)

Query:   164 ILQLCDNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIFVELKLLFLPF 223
             +L+LC  R VLFDNK+KDE K+ EQ+ +LL+ V +V  Q  G PYT  +  ++K      
Sbjct:   158 VLRLCGGRKVLFDNKSKDEKKKVEQVKQLLARVENVGEQTGGIPYTYQLHRKIKE----- 212

Query:   224 VNDLEKKVVPNMLKETSRLEQQLTEEQAAPLKVEEAAQLAQMKSNDEIRKLRENLERAQR 283
              ND   +    +++  +R E +L E Q   L  +E  Q+ + K+   I +   N E+   
Sbjct:   213 ENDERLREEERVIESKNRAEAELAEMQQNLLMEKEKLQMEEAKNKQLIAQAEAN-EKLM- 270

Query:   284 ETEELRKRAEKGGCAIL 300
             E E  + RAE    A++
Sbjct:   271 EQERAKNRAETELAAVM 287

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0006826 "iron ion transport" evidence=RCA

GO:0006897 "endocytosis" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2203832 AT1G33930 [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 6.4e-20, Sum P(2) = 6.4e-20
 Identities = 36/93 (38%), Positives = 51/93 (54%)

Query:    44 LFDFSAGSKFVGKEIVTCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSWQTLFGKNVFD 103
             LFD +  ++F+ KEIV C+ +A++G+HAV+          QEEE AL + Q LFG  + D
Sbjct:    95 LFDLAVSAEFISKEIVNCLILAREGLHAVVLVLSLSTRISQEEENALCTLQMLFGGKIVD 154

Query:   104 YMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKS 136
             Y+IVVF               YL   CP+ LK+
Sbjct:   155 YLIVVFTCGDMLEDRNMTLEDYLSNGCPEFLKN 187

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2203792 AT1G33910 [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 8.1e-20, Sum P(2) = 8.1e-20
 Identities = 33/93 (35%), Positives = 49/93 (52%)

Query:    44 LFDFSAGSKFVGKEIVTCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSWQTLFGKNVFD 103
             LFD S  + ++ KEI+ C+ +   G+HAV+          +EEEAAL+  Q LFG  + D
Sbjct:    67 LFDLSVSTDYMNKEIINCLTLTDGGLHAVVLVLSVGTDILKEEEAALNKLQLLFGSKIVD 126

Query:   104 YMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKS 136
             Y++V+F               YL R CP+ LK+
Sbjct:   127 YLVVLFTGGDVLEKENKTLDDYLSRGCPEFLKT 159

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2203827 AT1G33870 [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
 Identities = 30/89 (33%), Positives = 41/89 (46%)

Query:    44 LFDFSAGSKFVGKEIVTCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSWQTLFGKNVFD 103
             LFD S  + ++  EI+ C+ MA+ GIHA +          QEEE+ L + Q +F   + D
Sbjct:    36 LFDSSVSANYITTEILKCLTMAEGGIHAFMFVLSAGNRITQEEESTLDTLQLIFDSKILD 95

Query:   104 YMIVVFXXXXXXXXXXXXXXXYLGRECPK 132
             Y IVVF               Y    CPK
Sbjct:    96 YFIVVFTGGDKLEANEQTLDDYFSEGCPK 124

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0045036 "protein targeting to chloroplast" evidence=RCA

TAIR|locus:2012678 AT1G33830 [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
 Identities = 29/89 (32%), Positives = 41/89 (46%)

Query:    44 LFDFSAGSKFVGKEIVTCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSWQTLFGKNVFD 103
             L + S    ++ KEI+ C+ MA++GIHAVL          Q EE   ++ Q +F   + D
Sbjct:    68 LLESSVSGDYLSKEIMNCLTMAEEGIHAVLFVLSITNRISQREEFTFNTLQQIFDDKILD 127

Query:   104 YMIVVFXXXXXXXXXXXXXXXYLGRECPK 132
             Y IVVF               YL   CP+
Sbjct:   128 YFIVVFTGGDELEADNQTLDDYLREGCPE 156

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	300
pfam04548	211	pfam04548, AIG1, AIG1 family	1e-48
cd01852	201	cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)	8e-45

>gnl|CDD|218141 pfam04548, AIG1, AIG1 family

 Score =  160 bits (408), Expect = 1e-48
 Identities = 74/188 (39%), Positives = 107/188 (56%), Gaps = 38/188 (20%)

Query: 30  KVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAA 89
            VIDT         LFD S  + F+ KEI+ C+ +A+ G HAVL+V S+  RF++EEE A
Sbjct: 52  NVIDT-------PGLFDLSVSNDFISKEIIRCLLLAEPGPHAVLLVLSLG-RFTEEEEQA 103

Query: 90  LHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHF 149
           L + Q LFG  + DYMIVVFT  D+LED+   L+DYL   CP+ LK              
Sbjct: 104 LRTLQELFGSKILDYMIVVFTRKDDLEDDS--LDDYLSDGCPEFLKE------------- 148

Query: 150 LNDFLLPWGIGRRGILQLCDNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYT 209
                         +L+ C  R VLF+NK  D  ++ EQ+ +LL+LV ++  +N G+PYT
Sbjct: 149 --------------VLRECGGRYVLFNNK-ADGEEKEEQVQQLLALVEAIVKENGGKPYT 193

Query: 210 DDIFVELK 217
           +D++ ++K
Sbjct: 194 NDLYEKIK 201

Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria. Length = 211

>gnl|CDD|206651 cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)

 Score =  150 bits (382), Expect = 8e-45
 Identities = 62/187 (33%), Positives = 96/187 (51%), Gaps = 39/187 (20%)

Query: 31  VIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL 90
           VIDT         LFD S   + + KEI+ C+ ++  G HA L+V  +  RF++EEE A+
Sbjct: 53  VIDT-------PGLFDTSVSPEQLSKEIIRCLSLSAPGPHAFLLVVPLG-RFTEEEEQAV 104

Query: 91  HSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFL 150
              Q LFG+ V D+ IV+FT GD+LE    +LEDYL   C                   L
Sbjct: 105 EELQELFGEKVLDHTIVLFTRGDDLE--GGSLEDYLEDSCE-----------------AL 145

Query: 151 NDFLLPWGIGRRGILQLCDNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTD 210
                      + +L+ C  R V F+NK K   ++ +Q+ +LL+ V  +  +N G+PYT+
Sbjct: 146 -----------KRLLEKCGGRYVAFNNKAKGR-EQEQQVKELLAKVEEMVRENGGKPYTN 193

Query: 211 DIFVELK 217
           +++ E +
Sbjct: 194 EMYEEAE 200

This group represents Arabidoposis protein AIG1 (avrRpt2-induced gene 1) that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). Length = 201

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	300
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	100.0
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	100.0
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.86
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.79
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.33
PRK00089	292	era GTPase Era; Reviewed	97.93
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	97.64
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	97.63
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	97.45
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	97.35
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	97.3
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	97.19
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	97.17
PRK00093	435	GTP-binding protein Der; Reviewed	97.17
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	96.98
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	96.88
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	96.84
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	96.68
cd01881	176	Obg_like The Obg-like subfamily consists of five w	96.62
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	96.6
PRK15494	339	era GTPase Era; Provisional	96.53
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	96.38
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	96.38
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	96.24
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	96.22
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	96.13
COG1159	298	Era GTPase [General function prediction only]	96.11
PRK00093	435	GTP-binding protein Der; Reviewed	95.98
COG5019	373	CDC3 Septin family protein [Cell division and chro	95.98
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	95.88
PRK12299	335	obgE GTPase CgtA; Reviewed	95.87
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	95.84
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	95.78
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	95.76
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	95.46
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	95.35
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	95.31
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	95.24
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	95.14
PRK03003	472	GTP-binding protein Der; Reviewed	94.94
PRK12298	390	obgE GTPase CgtA; Reviewed	94.89
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	94.88
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	94.82
COG1160	444	Predicted GTPases [General function prediction onl	94.69
PRK12736	394	elongation factor Tu; Reviewed	94.66
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	94.55
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	94.45
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	94.37
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	94.26
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	94.21
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	94.03
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	93.98
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	93.97
TIGR00485	394	EF-Tu translation elongation factor TU. This align	93.68
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	93.54
PRK03003	472	GTP-binding protein Der; Reviewed	93.33
PLN03127	447	Elongation factor Tu; Provisional	93.22
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	93.17
PRK00741	526	prfC peptide chain release factor 3; Provisional	93.05
cd00881	189	GTP_translation_factor GTP translation factor fami	93.05
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	92.76
PRK09866	741	hypothetical protein; Provisional	92.54
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	92.5
PRK12735	396	elongation factor Tu; Reviewed	92.5
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	92.31
PRK12296	500	obgE GTPase CgtA; Reviewed	92.26
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	92.11
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	92.03
PRK00049	396	elongation factor Tu; Reviewed	91.97
PRK12297	424	obgE GTPase CgtA; Reviewed	91.97
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	91.86
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	91.66
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	91.65
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	91.64
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	91.53
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	91.39
CHL00071	409	tufA elongation factor Tu	91.25
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	91.22
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	91.21
TIGR00503	527	prfC peptide chain release factor 3. This translat	90.68
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	90.44
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	90.39
PRK13768	253	GTPase; Provisional	90.29
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	90.29
PRK04000	411	translation initiation factor IF-2 subunit gamma;	90.27
PRK15467	158	ethanolamine utilization protein EutP; Provisional	90.2
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	90.14
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	89.59
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	89.5
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	89.35
PRK12739	691	elongation factor G; Reviewed	89.23
PRK12317	425	elongation factor 1-alpha; Reviewed	89.1
PRK00007	693	elongation factor G; Reviewed	89.03
cd01896	233	DRG The developmentally regulated GTP-binding prot	88.49
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	88.36
PLN00223	181	ADP-ribosylation factor; Provisional	88.27
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	88.24
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	87.92
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	87.82
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	87.32
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	87.26
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	87.22
TIGR00064	272	ftsY signal recognition particle-docking protein F	87.14
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	87.06
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	87.02
PLN03126	478	Elongation factor Tu; Provisional	86.96
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	86.74
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	86.59
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	86.5
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	86.24
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	86.22
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	86.19
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	86.18
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	86.14
COG1160	444	Predicted GTPases [General function prediction onl	86.14
PF07946	321	DUF1682: Protein of unknown function (DUF1682); In	86.05
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	85.66
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	85.64
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	85.58
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	85.56
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	85.36
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	85.26
PRK10416	318	signal recognition particle-docking protein FtsY;	85.05
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	85.01
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	84.89
PTZ00133	182	ADP-ribosylation factor; Provisional	84.42
COG0218	200	Predicted GTPase [General function prediction only	84.39
PRK13351	687	elongation factor G; Reviewed	84.31
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	84.31
PRK12740	668	elongation factor G; Reviewed	84.14
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	84.01
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	83.7
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	83.6
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	83.6
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	83.5
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	83.03
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	82.37
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	82.28
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	82.27
PLN03118	211	Rab family protein; Provisional	82.24
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	82.23
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	81.62
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	81.2
PRK05306	787	infB translation initiation factor IF-2; Validated	81.2
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	81.1
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	81.07
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	80.92
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	80.63
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	80.54
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	80.38
COG1084	346	Predicted GTPase [General function prediction only	80.18

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=100.00  E-value=4.8e-46  Score=328.52  Aligned_cols=174  Identities=33%  Similarity=0.535  Sum_probs=153.7

Q ss_pred             CCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHH
Q 036659           10 FGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAA   89 (300)
Q Consensus        10 ~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~a   89 (300)
                      .++|..|+..+ ..++|+.|+|||||       ||||+..+.+.+.++|.+|+.++.|||||||||++++ |||.+|+.+
T Consensus        33 ~~~t~~~~~~~-~~~~g~~v~VIDTP-------Gl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~  103 (212)
T PF04548_consen   33 KSVTQECQKYS-GEVDGRQVTVIDTP-------GLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREV  103 (212)
T ss_dssp             SS--SS-EEEE-EEETTEEEEEEE---------SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHH
T ss_pred             CCcccccceee-eeecceEEEEEeCC-------CCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHH
Confidence            78999999985 68999999999999       9999999999999999999999999999999999999 999999999


Q ss_pred             HHHHHHHhchhhhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcC
Q 036659           90 LHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCD  169 (300)
Q Consensus        90 l~~lq~lFG~~i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~  169 (300)
                      ++.++++||+++|+|+|||||++|.+.+.  ++++|+.+++|..|++                           |+++|+
T Consensus       104 l~~l~~~FG~~~~k~~ivvfT~~d~~~~~--~~~~~l~~~~~~~l~~---------------------------li~~c~  154 (212)
T PF04548_consen  104 LELLQEIFGEEIWKHTIVVFTHADELEDD--SLEDYLKKESNEALQE---------------------------LIEKCG  154 (212)
T ss_dssp             HHHHHHHHCGGGGGGEEEEEEEGGGGTTT--THHHHHHHHHHHHHHH---------------------------HHHHTT
T ss_pred             HHHHHHHccHHHHhHhhHHhhhccccccc--cHHHHHhccCchhHhH---------------------------HhhhcC
Confidence            99999999999999999999999999984  6999999656788999                           999999


Q ss_pred             CeEEEEeCCCcchhhchHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhh
Q 036659          170 NRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIFVELKLLFL  221 (300)
Q Consensus       170 ~R~~~FnNk~~de~~~~~Qv~eLL~~Ve~mv~~NgG~~yt~e~f~e~e~~~~  221 (300)
                      +|||+|||++.+..++..||.+||++|+.|+.+|||.|||+++|+++++..+
T Consensus       155 ~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~~~~~~~  206 (212)
T PF04548_consen  155 GRYHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEEAEERKE  206 (212)
T ss_dssp             TCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHHHHHCCH
T ss_pred             CEEEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence            9999999996666677899999999999999999999999999999997554

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=100.00  E-value=3.9e-39  Score=278.01  Aligned_cols=165  Identities=41%  Similarity=0.637  Sum_probs=154.0

Q ss_pred             CCCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHH
Q 036659            9 RFGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEA   88 (300)
Q Consensus         9 ~~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~   88 (300)
                      ..++|..|+... ..++|+.++|||||       |++|+..+.+.+.++|.+|+.++.||||+||+|++++ +||++|..
T Consensus        32 ~~~~T~~~~~~~-~~~~~~~i~viDTP-------G~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~-~~t~~d~~  102 (196)
T cd01852          32 ASSVTKTCQKES-AVWDGRRVNVIDTP-------GLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLG-RFTEEEEQ  102 (196)
T ss_pred             CCCcccccceee-EEECCeEEEEEECc-------CCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECC-CcCHHHHH
Confidence            368999999885 67899999999999       9999888888999999999999999999999999998 69999999


Q ss_pred             HHHHHHHHhchhhhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhc
Q 036659           89 ALHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLC  168 (300)
Q Consensus        89 al~~lq~lFG~~i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C  168 (300)
                      +++.++++||+++++|+|||||++|++.+  .++++|+.. .+..|+.                           ++++|
T Consensus       103 ~l~~l~~~fg~~~~~~~ivv~T~~d~l~~--~~~~~~~~~-~~~~l~~---------------------------l~~~c  152 (196)
T cd01852         103 AVETLQELFGEKVLDHTIVLFTRGDDLEG--GTLEDYLEN-SCEALKR---------------------------LLEKC  152 (196)
T ss_pred             HHHHHHHHhChHhHhcEEEEEECccccCC--CcHHHHHHh-ccHHHHH---------------------------HHHHh
Confidence            99999999999999999999999999987  499999988 5688999                           99999


Q ss_pred             CCeEEEEeCCCcchhhchHHHHHHHHHHHHHHHHcCCCCCChHHH
Q 036659          169 DNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIF  213 (300)
Q Consensus       169 ~~R~~~FnNk~~de~~~~~Qv~eLL~~Ve~mv~~NgG~~yt~e~f  213 (300)
                      ++|||+|||+.+ .+++..||.+||++|++|+.+|+|.||+++||
T Consensus       153 ~~r~~~f~~~~~-~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~~~  196 (196)
T cd01852         153 GGRYVAFNNKAK-GEEQEQQVKELLAKVESMVKENGGKPYTNDMY  196 (196)
T ss_pred             CCeEEEEeCCCC-cchhHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence            999999999986 55678999999999999999999999999886

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.86  E-value=8.1e-22  Score=203.00  Aligned_cols=127  Identities=14%  Similarity=0.136  Sum_probs=104.8

Q ss_pred             CCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhh--ccCCCCCeEEEEEEeCCCCCC--HHHH
Q 036659           12 APKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCI--GMAKDGIHAVLVVFSVRSRFS--QEEE   87 (300)
Q Consensus        12 vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci--~l~~pGpHA~LLV~~v~~rfT--~EE~   87 (300)
                      .|+.|... ...++|+.|+|||||       ||||+..+. ....+|.+|+  .++.+|||+||+|++++ +++  .+|.
T Consensus       152 ~TTr~~ei-~~~idG~~L~VIDTP-------GL~dt~~dq-~~neeILk~Ik~~Lsk~gpDVVLlV~RLd-~~~~D~eD~  221 (763)
T TIGR00993       152 GTTSVQEI-EGLVQGVKIRVIDTP-------GLKSSASDQ-SKNEKILSSVKKFIKKNPPDIVLYVDRLD-MQTRDSNDL  221 (763)
T ss_pred             CceEEEEE-EEEECCceEEEEECC-------CCCccccch-HHHHHHHHHHHHHHhcCCCCEEEEEEeCC-CccccHHHH
Confidence            34444333 246899999999999       999986543 3456666666  45678999999999997 444  3788


Q ss_pred             HHHHHHHHHhchhhhcceEEEEEcCCCCCCC-----cccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccch
Q 036659           88 AALHSWQTLFGKNVFDYMIVVFTGGDELEDN-----DETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRR  162 (300)
Q Consensus        88 ~al~~lq~lFG~~i~~y~IVlFT~gD~Le~~-----~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (300)
                      .+++.|+++||+++|+||||||||+|.+..+     +.|+++|+.. |+..||+                          
T Consensus       222 ~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~-rs~~Lq~--------------------------  274 (763)
T TIGR00993       222 PLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQ-RSHIVQQ--------------------------  274 (763)
T ss_pred             HHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhh-ChHHHHH--------------------------
Confidence            9999999999999999999999999999732     2699999988 8999999                          


Q ss_pred             hhhhhcCCeEEEEe
Q 036659          163 GILQLCDNRCVLFD  176 (300)
Q Consensus       163 ~Ll~~C~~R~~~Fn  176 (300)
                       +|..|.||+++||
T Consensus       275 -~Irq~~g~~~l~n  287 (763)
T TIGR00993       275 -AIGQAVGDLRLMN  287 (763)
T ss_pred             -HHHHhcCcceecc
Confidence             9999999999999

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.79  E-value=1e-18  Score=166.64  Aligned_cols=105  Identities=16%  Similarity=0.165  Sum_probs=91.0

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCC-CCCCHHHHHHHHHHHHHhchh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVR-SRFSQEEEAALHSWQTLFGKN  100 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~-~rfT~EE~~al~~lq~lFG~~  100 (300)
                      ..++|+.++|||||       ||+|.....+.. .++.+|.. ..+|||+||+|.+++ .|+++.|+.+++.++.+||++
T Consensus        81 ~~~~G~~l~VIDTP-------GL~d~~~~~e~~-~~~ik~~l-~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~  151 (313)
T TIGR00991        81 RTRAGFTLNIIDTP-------GLIEGGYINDQA-VNIIKRFL-LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD  151 (313)
T ss_pred             EEECCeEEEEEECC-------CCCchHHHHHHH-HHHHHHHh-hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh
Confidence            35799999999999       999976544444 57778874 467999999999876 399999999999999999999


Q ss_pred             hhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccc
Q 036659          101 VFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKS  136 (300)
Q Consensus       101 i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~  136 (300)
                      +|+||||||||+|.+..++.++++|+.+ ++..|++
T Consensus       152 iw~~~IVVfTh~d~~~pd~~~~e~fv~~-~~~~lq~  186 (313)
T TIGR00991       152 IWRKSLVVLTHAQFSPPDGLEYNDFFSK-RSEALLR  186 (313)
T ss_pred             hhccEEEEEECCccCCCCCCCHHHHHHh-cHHHHHH
Confidence            9999999999999886666899999988 7888988

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.33  E-value=3.4e-12  Score=117.48  Aligned_cols=99  Identities=17%  Similarity=0.142  Sum_probs=79.4

Q ss_pred             CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCC---hHHHHHHHHHhhccCCCCCeEEEEEEeCCC-CCCHHH
Q 036659           11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAG---SKFVGKEIVTCIGMAKDGIHAVLVVFSVRS-RFSQEE   86 (300)
Q Consensus        11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~---~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~-rfT~EE   86 (300)
                      +.|..|+.. ...++|+.++|||||       ||.|+..+   .+.+...|.+++  ...++|++|+|.+++. |++..|
T Consensus        64 ~~T~~~~~~-~~~~~g~~i~vIDTP-------Gl~~~~~~~~~~~~~~~~I~~~l--~~~~idvIL~V~rlD~~r~~~~d  133 (249)
T cd01853          64 SETLRVREV-SGTVDGFKLNIIDTP-------GLLESVMDQRVNRKILSSIKRYL--KKKTPDVVLYVDRLDMYRRDYLD  133 (249)
T ss_pred             CceEEEEEE-EEEECCeEEEEEECC-------CcCcchhhHHHHHHHHHHHHHHH--hccCCCEEEEEEcCCCCCCCHHH
Confidence            567777665 357899999999999       98877432   233444555554  3568999999999874 899999


Q ss_pred             HHHHHHHHHHhchhhhcceEEEEEcCCCCCCCc
Q 036659           87 EAALHSWQTLFGKNVFDYMIVVFTGGDELEDND  119 (300)
Q Consensus        87 ~~al~~lq~lFG~~i~~y~IVlFT~gD~Le~~~  119 (300)
                      ..+++.|+..||.++|+|+||||||.|.+..++
T Consensus       134 ~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~  166 (249)
T cd01853         134 LPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG  166 (249)
T ss_pred             HHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence            999999999999999999999999999886543

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PRK00089 era GTPase Era; Reviewed

Probab=97.93  E-value=0.00012  Score=67.18  Aligned_cols=132  Identities=16%  Similarity=0.192  Sum_probs=84.4

Q ss_pred             CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659           25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY  104 (300)
Q Consensus        25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y  104 (300)
                      ++..+++||||       |+++..   ....+.+.....-+.++.|++|+|+.+...++..+...++.+..     .-..
T Consensus        51 ~~~qi~~iDTP-------G~~~~~---~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~-----~~~p  115 (292)
T PRK00089         51 DDAQIIFVDTP-------GIHKPK---RALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKK-----VKTP  115 (292)
T ss_pred             CCceEEEEECC-------CCCCch---hHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhh-----cCCC
Confidence            45799999999       888754   33445555555556679999999999986689888877777662     2356


Q ss_pred             eEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcCCeEEEEeCCCcchhh
Q 036659          105 MIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTKDEAK  184 (300)
Q Consensus       105 ~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~R~~~FnNk~~de~~  184 (300)
                      .|+|+|.-|.+.+. ..+.+.+..     +.+                           ...  ...++.++.++     
T Consensus       116 vilVlNKiDl~~~~-~~l~~~~~~-----l~~---------------------------~~~--~~~i~~iSA~~-----  155 (292)
T PRK00089        116 VILVLNKIDLVKDK-EELLPLLEE-----LSE---------------------------LMD--FAEIVPISALK-----  155 (292)
T ss_pred             EEEEEECCcCCCCH-HHHHHHHHH-----HHh---------------------------hCC--CCeEEEecCCC-----
Confidence            88899988876332 233333322     111                           111  12344444443     


Q ss_pred             chHHHHHHHHHHHHHHHHcCCCCCChHHH
Q 036659          185 RTEQIWKLLSLVNSVAVQNDGQPYTDDIF  213 (300)
Q Consensus       185 ~~~Qv~eLL~~Ve~mv~~NgG~~yt~e~f  213 (300)
                       ...+.+|++.+.+.+..+ ..+|.++++
T Consensus       156 -~~gv~~L~~~L~~~l~~~-~~~y~~~~~  182 (292)
T PRK00089        156 -GDNVDELLDVIAKYLPEG-PPYYPEDQI  182 (292)
T ss_pred             -CCCHHHHHHHHHHhCCCC-CCCCCCCCC
Confidence             247888998888887654 356766643

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=97.64  E-value=0.0012  Score=52.54  Aligned_cols=79  Identities=24%  Similarity=0.239  Sum_probs=53.6

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ..+++..++++|||       |+.+.....+...  +.+.. .+...+|++++|+.+..+.+..+...+..   .    .
T Consensus        44 ~~~~~~~~~i~Dtp-------G~~~~~~~~~~~~--~~~~~-~~~~~~~~~v~v~d~~~~~~~~~~~~~~~---~----~  106 (157)
T cd04164          44 IDIGGIPVRLIDTA-------GIRETEDEIEKIG--IERAR-EAIEEADLVLFVIDASRGLDEEDLEILEL---P----A  106 (157)
T ss_pred             EEeCCEEEEEEECC-------CcCCCcchHHHHH--HHHHH-HHHhhCCEEEEEEECCCCCCHHHHHHHHh---h----c
Confidence            34678899999999       8777654332221  11111 22358899999999987888887766554   2    2


Q ss_pred             hcceEEEEEcCCCCCC
Q 036659          102 FDYMIVVFTGGDELED  117 (300)
Q Consensus       102 ~~y~IVlFT~gD~Le~  117 (300)
                      -...|+|+|.-|....
T Consensus       107 ~~~vi~v~nK~D~~~~  122 (157)
T cd04164         107 DKPIIVVLNKSDLLPD  122 (157)
T ss_pred             CCCEEEEEEchhcCCc
Confidence            3578999999886643

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01894 EngA1 EngA1 subfamily

Probab=97.63  E-value=0.00031  Score=56.18  Aligned_cols=91  Identities=16%  Similarity=0.122  Sum_probs=61.8

Q ss_pred             CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHH
Q 036659           11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL   90 (300)
Q Consensus        11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al   90 (300)
                      +.|..+... ...++|..+.+||||       |+-+...   ...+.+.+....+..+.|++++|+.....++..+...+
T Consensus        30 ~~t~~~~~~-~~~~~~~~~~i~Dtp-------G~~~~~~---~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~   98 (157)
T cd01894          30 GVTRDRIYG-EAEWGGREFILIDTG-------GIEPDDE---GISKEIREQAELAIEEADVILFVVDGREGLTPADEEIA   98 (157)
T ss_pred             CceeCceeE-EEEECCeEEEEEECC-------CCCCchh---HHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHH
Confidence            344444443 345778999999999       8765432   34444544444445688999999999877888777666


Q ss_pred             HHHHHHhchhhhcceEEEEEcCCCCCC
Q 036659           91 HSWQTLFGKNVFDYMIVVFTGGDELED  117 (300)
Q Consensus        91 ~~lq~lFG~~i~~y~IVlFT~gD~Le~  117 (300)
                      ..++.. +    ..+++|+|.-|....
T Consensus        99 ~~~~~~-~----~piiiv~nK~D~~~~  120 (157)
T cd01894          99 KYLRKS-K----KPVILVVNKVDNIKE  120 (157)
T ss_pred             HHHHhc-C----CCEEEEEECcccCCh
Confidence            665542 2    688999999886643

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04163 Era Era subfamily

Probab=97.45  E-value=0.0017  Score=51.54  Aligned_cols=87  Identities=18%  Similarity=0.101  Sum_probs=55.7

Q ss_pred             eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659           24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD  103 (300)
Q Consensus        24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~  103 (300)
                      ..+..+.+||||       |+.+........   +.+......+++|++++|+.....++..+...+..+...     -.
T Consensus        48 ~~~~~~~liDtp-------G~~~~~~~~~~~---~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~-----~~  112 (168)
T cd04163          48 DDDAQIIFVDTP-------GIHKPKKKLGER---MVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKS-----KT  112 (168)
T ss_pred             cCCeEEEEEECC-------CCCcchHHHHHH---HHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHh-----CC
Confidence            345789999999       877654322211   333334446799999999999866787777666655443     23


Q ss_pred             ceEEEEEcCCCCCCCcccHHHhh
Q 036659          104 YMIVVFTGGDELEDNDETLEDYL  126 (300)
Q Consensus       104 y~IVlFT~gD~Le~~~~tledyl  126 (300)
                      -.+||+|.-|..... ..+.+++
T Consensus       113 ~~iiv~nK~Dl~~~~-~~~~~~~  134 (168)
T cd04163         113 PVILVLNKIDLVKDK-EDLLPLL  134 (168)
T ss_pred             CEEEEEEchhccccH-HHHHHHH
Confidence            467888888865322 3445444

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01895 EngA2 EngA2 subfamily

Probab=97.35  E-value=0.007  Score=48.71  Aligned_cols=84  Identities=14%  Similarity=0.021  Sum_probs=51.6

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ...+|..+.+||||       |+.+.+.....+..-...+...+.++.|++++|+.+....+.+....+..+..     .
T Consensus        45 ~~~~~~~~~iiDtp-------G~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~  112 (174)
T cd01895          45 FEYDGKKYTLIDTA-------GIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILE-----E  112 (174)
T ss_pred             EEECCeeEEEEECC-------CCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHh-----c
Confidence            35678899999999       66654322111111111112223468999999999987888766554443322     1


Q ss_pred             hcceEEEEEcCCCCCC
Q 036659          102 FDYMIVVFTGGDELED  117 (300)
Q Consensus       102 ~~y~IVlFT~gD~Le~  117 (300)
                      -...||++|.-|....
T Consensus       113 ~~~~iiv~nK~Dl~~~  128 (174)
T cd01895         113 GKALVIVVNKWDLVEK  128 (174)
T ss_pred             CCCEEEEEeccccCCc
Confidence            2578888998886544

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=97.30  E-value=0.0091  Score=48.02  Aligned_cols=88  Identities=10%  Similarity=0.059  Sum_probs=52.6

Q ss_pred             CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHH
Q 036659           11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL   90 (300)
Q Consensus        11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al   90 (300)
                      +.|..+... ...++|..+.+||||       |+.+....+.  ..++.+..... +++|++++|+... .... ....+
T Consensus        28 ~~t~~~~~~-~~~~~~~~~~liDtp-------G~~~~~~~~~--~~~~~~~~~~~-~~~d~vi~v~d~~-~~~~-~~~~~   94 (158)
T cd01879          28 GVTVEKKEG-RFKLGGKEIEIVDLP-------GTYSLSPYSE--DEKVARDFLLG-EKPDLIVNVVDAT-NLER-NLYLT   94 (158)
T ss_pred             CcccccceE-EEeeCCeEEEEEECC-------CccccCCCCh--hHHHHHHHhcC-CCCcEEEEEeeCC-cchh-HHHHH
Confidence            455556554 467889999999999       8766543221  12333322222 8999999999987 4322 12222


Q ss_pred             HHHHHHhchhhhcceEEEEEcCCCCC
Q 036659           91 HSWQTLFGKNVFDYMIVVFTGGDELE  116 (300)
Q Consensus        91 ~~lq~lFG~~i~~y~IVlFT~gD~Le  116 (300)
                      ..+.. +    -...|+|+|.-|...
T Consensus        95 ~~~~~-~----~~~~iiv~NK~Dl~~  115 (158)
T cd01879          95 LQLLE-L----GLPVVVALNMIDEAE  115 (158)
T ss_pred             HHHHH-c----CCCEEEEEehhhhcc
Confidence            22221 2    245788889888554

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=97.19  E-value=0.0015  Score=51.69  Aligned_cols=84  Identities=13%  Similarity=0.137  Sum_probs=52.7

Q ss_pred             CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHH
Q 036659           11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL   90 (300)
Q Consensus        11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al   90 (300)
                      +.|..+... ...+++..+.+||||       |+++........ +.+....... .-.|++++|+....+.++.+...+
T Consensus        32 ~~T~~~~~~-~~~~~~~~~~~vDtp-------G~~~~~~~~~~~-~~~~~~~~~~-~~~d~ii~vv~~~~~~~~~~~~~~  101 (116)
T PF01926_consen   32 GTTRDPVYG-QFEYNNKKFILVDTP-------GINDGESQDNDG-KEIRKFLEQI-SKSDLIIYVVDASNPITEDDKNIL  101 (116)
T ss_dssp             TSSSSEEEE-EEEETTEEEEEEESS-------SCSSSSHHHHHH-HHHHHHHHHH-CTESEEEEEEETTSHSHHHHHHHH
T ss_pred             cceeeeeee-eeeeceeeEEEEeCC-------CCcccchhhHHH-HHHHHHHHHH-HHCCEEEEEEECCCCCCHHHHHHH
Confidence            455555332 235789999999999       988865433322 2333333333 455999999997744455556666


Q ss_pred             HHHHHHhchhhhcceEEEEE
Q 036659           91 HSWQTLFGKNVFDYMIVVFT  110 (300)
Q Consensus        91 ~~lq~lFG~~i~~y~IVlFT  110 (300)
                      ..+      +.-..+|+||+
T Consensus       102 ~~l------~~~~~~i~v~N  115 (116)
T PF01926_consen  102 REL------KNKKPIILVLN  115 (116)
T ss_dssp             HHH------HTTSEEEEEEE
T ss_pred             HHH------hcCCCEEEEEc
Confidence            666      25567888876

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=97.17  E-value=0.0027  Score=61.26  Aligned_cols=91  Identities=18%  Similarity=0.119  Sum_probs=67.2

Q ss_pred             CCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHH
Q 036659           10 FGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAA   89 (300)
Q Consensus        10 ~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~a   89 (300)
                      .++|..+... ...++|+.+.+||||       |+-+   ..+.+.+++......+-.+.|++|+|+.....+|..+...
T Consensus        31 ~g~t~d~~~~-~~~~~~~~~~liDTp-------G~~~---~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i   99 (429)
T TIGR03594        31 PGVTRDRKYG-DAEWGGREFILIDTG-------GIEE---DDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEI   99 (429)
T ss_pred             CCcccCceEE-EEEECCeEEEEEECC-------CCCC---cchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHH
Confidence            4677777766 467899999999999       7532   2244556666655556678999999999987899999887


Q ss_pred             HHHHHHHhchhhhcceEEEEEcCCCCC
Q 036659           90 LHSWQTLFGKNVFDYMIVVFTGGDELE  116 (300)
Q Consensus        90 l~~lq~lFG~~i~~y~IVlFT~gD~Le  116 (300)
                      ...++. +|    ..+|+|.+--|...
T Consensus       100 ~~~l~~-~~----~piilVvNK~D~~~  121 (429)
T TIGR03594       100 AKWLRK-SG----KPVILVANKIDGKK  121 (429)
T ss_pred             HHHHHH-hC----CCEEEEEECccCCc
Confidence            777765 23    46788888777554

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=97.17  E-value=0.0025  Score=61.76  Aligned_cols=90  Identities=16%  Similarity=0.043  Sum_probs=65.7

Q ss_pred             CCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHH
Q 036659           10 FGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAA   89 (300)
Q Consensus        10 ~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~a   89 (300)
                      .++|..+... ...++|..+.+||||       |+.+..   +....++..-...+..+.+++|+|+....++|..+...
T Consensus        33 ~~~t~d~~~~-~~~~~~~~~~liDT~-------G~~~~~---~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~  101 (435)
T PRK00093         33 PGVTRDRIYG-EAEWLGREFILIDTG-------GIEPDD---DGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEI  101 (435)
T ss_pred             CCCcccceEE-EEEECCcEEEEEECC-------CCCCcc---hhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHH
Confidence            4566666655 367899999999999       877622   22445555545555678999999999988899998888


Q ss_pred             HHHHHHHhchhhhcceEEEEEcCCCC
Q 036659           90 LHSWQTLFGKNVFDYMIVVFTGGDEL  115 (300)
Q Consensus        90 l~~lq~lFG~~i~~y~IVlFT~gD~L  115 (300)
                      ...+...     -..+|+|++--|..
T Consensus       102 ~~~l~~~-----~~piilv~NK~D~~  122 (435)
T PRK00093        102 AKILRKS-----NKPVILVVNKVDGP  122 (435)
T ss_pred             HHHHHHc-----CCcEEEEEECccCc
Confidence            7777654     35688888888843

>cd00880 Era_like Era (E

Probab=96.98  E-value=0.017  Score=44.81  Aligned_cols=82  Identities=17%  Similarity=0.120  Sum_probs=51.9

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcce
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYM  105 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~  105 (300)
                      +..+.++|||       |+.+...........+..    ....+|++++|+......+.....    +...+ ...-..+
T Consensus        44 ~~~~~~~Dt~-------g~~~~~~~~~~~~~~~~~----~~~~~d~il~v~~~~~~~~~~~~~----~~~~~-~~~~~~~  107 (163)
T cd00880          44 LGPVVLIDTP-------GIDEAGGLGREREELARR----VLERADLILFVVDADLRADEEEEK----LLELL-RERGKPV  107 (163)
T ss_pred             CCcEEEEECC-------CCCccccchhhHHHHHHH----HHHhCCEEEEEEeCCCCCCHHHHH----HHHHH-HhcCCeE
Confidence            6789999999       888766544332222222    235789999999998655555554    11222 1234568


Q ss_pred             EEEEEcCCCCCCCcccHHHh
Q 036659          106 IVVFTGGDELEDNDETLEDY  125 (300)
Q Consensus       106 IVlFT~gD~Le~~~~tledy  125 (300)
                      +||+|.-|.....  .+.+.
T Consensus       108 ivv~nK~D~~~~~--~~~~~  125 (163)
T cd00880         108 LLVLNKIDLLPEE--EEEEL  125 (163)
T ss_pred             EEEEEccccCChh--hHHHH
Confidence            9999999987652  44443

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR00436 era GTP-binding protein Era

Probab=96.88  E-value=0.018  Score=52.88  Aligned_cols=130  Identities=15%  Similarity=0.102  Sum_probs=75.2

Q ss_pred             CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659           25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY  104 (300)
Q Consensus        25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y  104 (300)
                      ++..+.++|||       |+.+...   ...+.+.+...-+-.+.+++|+|+......+.+ ...+..++. .    -..
T Consensus        46 ~~~qii~vDTP-------G~~~~~~---~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~-~----~~p  109 (270)
T TIGR00436        46 GASQIIFIDTP-------GFHEKKH---SLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQN-L----KRP  109 (270)
T ss_pred             CCcEEEEEECc-------CCCCCcc---hHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHh-c----CCC
Confidence            45679999999       8876422   223334443333446899999999997544443 444444443 1    246


Q ss_pred             eEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcC-CeEEEEeCCCcchh
Q 036659          105 MIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCD-NRCVLFDNKTKDEA  183 (300)
Q Consensus       105 ~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~-~R~~~FnNk~~de~  183 (300)
                      +|+|++--|....  ..+.+.+..                                   +....+ ..++..+-++.   
T Consensus       110 ~ilV~NK~Dl~~~--~~~~~~~~~-----------------------------------~~~~~~~~~v~~iSA~~g---  149 (270)
T TIGR00436       110 VVLTRNKLDNKFK--DKLLPLIDK-----------------------------------YAILEDFKDIVPISALTG---  149 (270)
T ss_pred             EEEEEECeeCCCH--HHHHHHHHH-----------------------------------HHhhcCCCceEEEecCCC---
Confidence            7899998886532  223332221                                   111111 14555555432   


Q ss_pred             hchHHHHHHHHHHHHHHHHcCCCCCChHHHH
Q 036659          184 KRTEQIWKLLSLVNSVAVQNDGQPYTDDIFV  214 (300)
Q Consensus       184 ~~~~Qv~eLL~~Ve~mv~~NgG~~yt~e~f~  214 (300)
                         ..+.+|++.+.+.+.. +..+|..++..
T Consensus       150 ---~gi~~L~~~l~~~l~~-~~~~~~~~~~t  176 (270)
T TIGR00436       150 ---DNTSFLAAFIEVHLPE-GPFRYPEDYVT  176 (270)
T ss_pred             ---CCHHHHHHHHHHhCCC-CCCCCCCcccC
Confidence               4788899998887744 34557766543

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=96.84  E-value=0.017  Score=49.07  Aligned_cols=78  Identities=13%  Similarity=0.121  Sum_probs=50.4

Q ss_pred             EEEEEEeCCCCcccCcccCCCCCChH---HHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659           27 VLEKVIDTRWVRHAIARLFDFSAGSK---FVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD  103 (300)
Q Consensus        27 r~v~VIDTP~w~~~~~glfd~~~~~e---~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~  103 (300)
                      ..+.++|||       |+.+......   .....+...+. ..++.|++|+|+....+++..+...+..+..     .-.
T Consensus        64 ~~~~liDtp-------G~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~-----~~~  130 (179)
T TIGR03598        64 DGFRLVDLP-------GYGYAKVSKEEKEKWQKLIEEYLE-KRENLKGVVLLMDIRHPLKELDLEMLEWLRE-----RGI  130 (179)
T ss_pred             CcEEEEeCC-------CCccccCChhHHHHHHHHHHHHHH-hChhhcEEEEEecCCCCCCHHHHHHHHHHHH-----cCC
Confidence            368999999       7655433211   11122222222 3467899999999988899999877655532     234


Q ss_pred             ceEEEEEcCCCCCC
Q 036659          104 YMIVVFTGGDELED  117 (300)
Q Consensus       104 y~IVlFT~gD~Le~  117 (300)
                      ..|||+|.-|.+..
T Consensus       131 pviiv~nK~D~~~~  144 (179)
T TIGR03598       131 PVLIVLTKADKLKK  144 (179)
T ss_pred             CEEEEEECcccCCH
Confidence            67888999886643

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=96.68  E-value=0.047  Score=43.45  Aligned_cols=76  Identities=18%  Similarity=0.226  Sum_probs=49.7

Q ss_pred             EEEEEeCCCCcccCcccCCCCCChHHHHHH----HHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659           28 LEKVIDTRWVRHAIARLFDFSAGSKFVGKE----IVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD  103 (300)
Q Consensus        28 ~v~VIDTP~w~~~~~glfd~~~~~e~v~kE----I~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~  103 (300)
                      .+.+||||       |+-+... +.....+    +..++. ..+..|++++|+.....++..+..++..+.. ++    .
T Consensus        46 ~~~~~D~~-------g~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~-~~----~  111 (170)
T cd01876          46 KFRLVDLP-------GYGYAKV-SKEVKEKWGKLIEEYLE-NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE-LG----I  111 (170)
T ss_pred             eEEEecCC-------Ccccccc-CHHHHHHHHHHHHHHHH-hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH-cC----C
Confidence            88899999       7554433 2222222    233333 4567889999998876677777776666643 33    4


Q ss_pred             ceEEEEEcCCCCCC
Q 036659          104 YMIVVFTGGDELED  117 (300)
Q Consensus       104 y~IVlFT~gD~Le~  117 (300)
                      ..++|+|..|.+..
T Consensus       112 ~vi~v~nK~D~~~~  125 (170)
T cd01876         112 PFLVVLTKADKLKK  125 (170)
T ss_pred             CEEEEEEchhcCCh
Confidence            67889999997654

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=96.62  E-value=0.03  Score=45.84  Aligned_cols=95  Identities=13%  Similarity=0.000  Sum_probs=52.3

Q ss_pred             CCCccccCCCceeeC-CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCC------C
Q 036659           11 GAPKTAPLPPTIRIQ-VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRF------S   83 (300)
Q Consensus        11 ~vT~tC~~~~t~~~~-Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rf------T   83 (300)
                      +.|..+.... ..++ |..+.++|||       |+.+.....+.+...+...    ..+.+++++|+......      +
T Consensus        28 ~~t~~~~~~~-~~~~~~~~~~i~Dtp-------G~~~~~~~~~~~~~~~~~~----~~~~d~ii~v~d~~~~~~~~~~~~   95 (176)
T cd01881          28 FTTLEPNLGV-VEVPDGARIQVADIP-------GLIEGASEGRGLGNQFLAH----IRRADAILHVVDASEDDDIGGVDP   95 (176)
T ss_pred             ceeecCcceE-EEcCCCCeEEEEecc-------ccchhhhcCCCccHHHHHH----HhccCEEEEEEeccCCccccccCH
Confidence            3455555442 4567 9999999999       8754322222222222221    23689999999987442      3


Q ss_pred             HHHHHH-HHHHHHHhc-----hhhhcceEEEEEcCCCCCC
Q 036659           84 QEEEAA-LHSWQTLFG-----KNVFDYMIVVFTGGDELED  117 (300)
Q Consensus        84 ~EE~~a-l~~lq~lFG-----~~i~~y~IVlFT~gD~Le~  117 (300)
                      .++... ...+.....     ...-.-.+||++--|....
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~  135 (176)
T cd01881          96 LEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA  135 (176)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch
Confidence            333222 222322221     1234678888888786543

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=96.60  E-value=0.066  Score=45.19  Aligned_cols=79  Identities=10%  Similarity=0.143  Sum_probs=48.9

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCCChHHHHHH---HHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKE---IVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF  102 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kE---I~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~  102 (300)
                      +..+.+||||       |+.+...+. ....+   +....--..++.+++++|+....+++..+....+.+. .+|    
T Consensus        69 ~~~l~l~Dtp-------G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~-~~~----  135 (196)
T PRK00454         69 NDKLRLVDLP-------GYGYAKVSK-EEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLK-EYG----  135 (196)
T ss_pred             CCeEEEeCCC-------CCCCcCCCc-hHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHH-HcC----
Confidence            4689999999       765433222 11222   2221112346788999998877788887766555543 222    


Q ss_pred             cceEEEEEcCCCCCC
Q 036659          103 DYMIVVFTGGDELED  117 (300)
Q Consensus       103 ~y~IVlFT~gD~Le~  117 (300)
                      ...+++++.-|.+.+
T Consensus       136 ~~~iiv~nK~Dl~~~  150 (196)
T PRK00454        136 IPVLIVLTKADKLKK  150 (196)
T ss_pred             CcEEEEEECcccCCH
Confidence            346888898887654

>PRK15494 era GTPase Era; Provisional

Probab=96.53  E-value=0.04  Score=52.99  Aligned_cols=78  Identities=18%  Similarity=0.215  Sum_probs=52.6

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ..++|..+.++|||       |+.+...   .+.+.+.++...+-.+.+++|+|+.....|+..+...+..++.. +   
T Consensus        95 ~~~~~~qi~~~DTp-------G~~~~~~---~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~-~---  160 (339)
T PRK15494         95 ITLKDTQVILYDTP-------GIFEPKG---SLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSL-N---  160 (339)
T ss_pred             EEeCCeEEEEEECC-------CcCCCcc---cHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc-C---
Confidence            35678899999999       8765322   24455555554455799999999998767888776666655432 2   


Q ss_pred             hcceEEEEEcCCC
Q 036659          102 FDYMIVVFTGGDE  114 (300)
Q Consensus       102 ~~y~IVlFT~gD~  114 (300)
                       .-.|||.+--|.
T Consensus       161 -~p~IlViNKiDl  172 (339)
T PRK15494        161 -IVPIFLLNKIDI  172 (339)
T ss_pred             -CCEEEEEEhhcC
Confidence             234666776663

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=96.38  E-value=0.023  Score=50.13  Aligned_cols=73  Identities=12%  Similarity=0.106  Sum_probs=47.0

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ..++|+.+++||||       |.-       ....++..    +..+.+++|+|+.+...++.+.......+ ..+|   
T Consensus        72 ~~~~~~~~~liDTp-------G~~-------~~~~~~~~----~~~~ad~~llVvD~~~~~~~~~~~~~~~~-~~~~---  129 (208)
T cd04166          72 FSTPKRKFIIADTP-------GHE-------QYTRNMVT----GASTADLAILLVDARKGVLEQTRRHSYIL-SLLG---  129 (208)
T ss_pred             EecCCceEEEEECC-------cHH-------HHHHHHHH----hhhhCCEEEEEEECCCCccHhHHHHHHHH-HHcC---
Confidence            45789999999999       742       12233333    34588999999998766666655443333 3334   


Q ss_pred             hcceEEEEEcCCCCC
Q 036659          102 FDYMIVVFTGGDELE  116 (300)
Q Consensus       102 ~~y~IVlFT~gD~Le  116 (300)
                      ..++|||.+--|...
T Consensus       130 ~~~iIvviNK~D~~~  144 (208)
T cd04166         130 IRHVVVAVNKMDLVD  144 (208)
T ss_pred             CCcEEEEEEchhccc
Confidence            246777888777553

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=96.38  E-value=0.072  Score=43.61  Aligned_cols=91  Identities=23%  Similarity=0.230  Sum_probs=50.7

Q ss_pred             CccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCCh-HHHHHHHHHhhccCCCCCeEEEEEEeCCCC--CC-HHHHH
Q 036659           13 PKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGS-KFVGKEIVTCIGMAKDGIHAVLVVFSVRSR--FS-QEEEA   88 (300)
Q Consensus        13 T~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~-e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r--fT-~EE~~   88 (300)
                      |..+.... ...++..++++|||       |+.+..... ..+.......+   .-+.+++|+|+.+..+  |+ ++...
T Consensus        34 t~~~~~~~-~~~~~~~~~i~Dt~-------G~~~~~~~~~~~~~~~~~~~~---~~~~d~~l~v~d~~~~~~~~~~~~~~  102 (168)
T cd01897          34 TKSLFVGH-FDYKYLRWQVIDTP-------GLLDRPLEERNTIEMQAITAL---AHLRAAVLFLFDPSETCGYSLEEQLS  102 (168)
T ss_pred             ccceeEEE-EccCceEEEEEECC-------CcCCccccCCchHHHHHHHHH---HhccCcEEEEEeCCcccccchHHHHH
Confidence            44444332 33567899999999       775533211 11111111111   2245799999988643  33 23344


Q ss_pred             HHHHHHHHhchhhhcceEEEEEcCCCCCC
Q 036659           89 ALHSWQTLFGKNVFDYMIVVFTGGDELED  117 (300)
Q Consensus        89 al~~lq~lFG~~i~~y~IVlFT~gD~Le~  117 (300)
                      .+..++..++   -..+|||+|-.|....
T Consensus       103 ~~~~l~~~~~---~~pvilv~NK~Dl~~~  128 (168)
T cd01897         103 LFEEIKPLFK---NKPVIVVLNKIDLLTF  128 (168)
T ss_pred             HHHHHHhhcC---cCCeEEEEEccccCch
Confidence            5555655542   3578899998886643

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=96.24  E-value=0.034  Score=42.12  Aligned_cols=74  Identities=19%  Similarity=0.077  Sum_probs=45.0

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcce
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYM  105 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~  105 (300)
                      +..+.++|||       |..+.....           ....++.+++++|+.+....+.++..................+
T Consensus        44 ~~~~~l~D~~-------g~~~~~~~~-----------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (157)
T cd00882          44 KVKLQIWDTA-------GQERFRSLR-----------RLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPI  105 (157)
T ss_pred             EEEEEEEecC-------ChHHHHhHH-----------HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcE
Confidence            7789999999       755432111           2344688999999999844444444333112222223334667


Q ss_pred             EEEEEcCCCCCC
Q 036659          106 IVVFTGGDELED  117 (300)
Q Consensus       106 IVlFT~gD~Le~  117 (300)
                      +|++|.-|....
T Consensus       106 ivv~nk~D~~~~  117 (157)
T cd00882         106 ILVGNKIDLPEE  117 (157)
T ss_pred             EEEEeccccccc
Confidence            888888886544

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=96.22  E-value=0.15  Score=49.32  Aligned_cols=91  Identities=16%  Similarity=0.162  Sum_probs=55.1

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHH-HHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKE-IVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN  100 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kE-I~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~  100 (300)
                      ..++|+.+.+||||       |+-+.....+.+..- +.+.. -+-.+.|++|+|+.+..++|..+...+..+.. .|  
T Consensus       215 ~~~~~~~~~liDT~-------G~~~~~~~~~~~e~~~~~~~~-~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~-~~--  283 (429)
T TIGR03594       215 FERNGKKYLLIDTA-------GIRRKGKVTEGVEKYSVLRTL-KAIERADVVLLVLDATEGITEQDLRIAGLILE-AG--  283 (429)
T ss_pred             EEECCcEEEEEECC-------CccccccchhhHHHHHHHHHH-HHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-cC--
Confidence            34689999999999       665433222112111 11111 12357799999999988999998876665543 22  


Q ss_pred             hhcceEEEEEcCCCCCCCcccHHHhh
Q 036659          101 VFDYMIVVFTGGDELEDNDETLEDYL  126 (300)
Q Consensus       101 i~~y~IVlFT~gD~Le~~~~tledyl  126 (300)
                        .-+|||.+--|-+++ ...++++.
T Consensus       284 --~~iiiv~NK~Dl~~~-~~~~~~~~  306 (429)
T TIGR03594       284 --KALVIVVNKWDLVKD-EKTREEFK  306 (429)
T ss_pred             --CcEEEEEECcccCCC-HHHHHHHH
Confidence              457777777776522 13444443

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01884 EF_Tu EF-Tu subfamily

Probab=96.13  E-value=0.059  Score=47.86  Aligned_cols=72  Identities=15%  Similarity=0.168  Sum_probs=50.1

Q ss_pred             eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh
Q 036659           23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF  102 (300)
Q Consensus        23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~  102 (300)
                      .++++.+++||||       |.-+       ...++..++    .+.+++++|+.+...++..++..+..+.. +|   .
T Consensus        61 ~~~~~~i~~iDtP-------G~~~-------~~~~~~~~~----~~~D~~ilVvda~~g~~~~~~~~~~~~~~-~~---~  118 (195)
T cd01884          61 ETANRHYAHVDCP-------GHAD-------YIKNMITGA----AQMDGAILVVSATDGPMPQTREHLLLARQ-VG---V  118 (195)
T ss_pred             cCCCeEEEEEECc-------CHHH-------HHHHHHHHh----hhCCEEEEEEECCCCCcHHHHHHHHHHHH-cC---C
Confidence            3578899999999       7532       234444443    47899999999875677777776665543 34   3


Q ss_pred             cceEEEEEcCCCCC
Q 036659          103 DYMIVVFTGGDELE  116 (300)
Q Consensus       103 ~y~IVlFT~gD~Le  116 (300)
                      .++||+++--|...
T Consensus       119 ~~iIvviNK~D~~~  132 (195)
T cd01884         119 PYIVVFLNKADMVD  132 (195)
T ss_pred             CcEEEEEeCCCCCC
Confidence            56788888888653

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG1159 Era GTPase [General function prediction only]

Probab=96.11  E-value=0.071  Score=51.74  Aligned_cols=135  Identities=15%  Similarity=0.184  Sum_probs=90.4

Q ss_pred             eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659           24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD  103 (300)
Q Consensus        24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~  103 (300)
                      .+..++..||||       |++-+.   ..+++=+.+++.-+--++.++|+|+.....++..|+..++.++.     .-.
T Consensus        51 ~~~~QiIfvDTP-------Gih~pk---~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~-----~~~  115 (298)
T COG1159          51 TDNAQIIFVDTP-------GIHKPK---HALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKK-----TKT  115 (298)
T ss_pred             cCCceEEEEeCC-------CCCCcc---hHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhh-----cCC
Confidence            346689999999       998763   45666688888888889999999999985699999999999988     223


Q ss_pred             ceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcCCeEEEEeCCCcchh
Q 036659          104 YMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTKDEA  183 (300)
Q Consensus       104 y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~R~~~FnNk~~de~  183 (300)
                      -.|++++--|..... ..+...+..     ++.                           .+..-  ..+-++-..    
T Consensus       116 pvil~iNKID~~~~~-~~l~~~~~~-----~~~---------------------------~~~f~--~ivpiSA~~----  156 (298)
T COG1159         116 PVILVVNKIDKVKPK-TVLLKLIAF-----LKK---------------------------LLPFK--EIVPISALK----  156 (298)
T ss_pred             CeEEEEEccccCCcH-HHHHHHHHH-----HHh---------------------------hCCcc--eEEEeeccc----
Confidence            456666666766653 113333221     111                           11111  455555443    


Q ss_pred             hchHHHHHHHHHHHHHHHHcCCCCCChHHHHH
Q 036659          184 KRTEQIWKLLSLVNSVAVQNDGQPYTDDIFVE  215 (300)
Q Consensus       184 ~~~~Qv~eLL~~Ve~mv~~NgG~~yt~e~f~e  215 (300)
                        ...+..|++.+...+.++ -.+|..+++.+
T Consensus       157 --g~n~~~L~~~i~~~Lpeg-~~~yp~d~itD  185 (298)
T COG1159         157 --GDNVDTLLEIIKEYLPEG-PWYYPEDQITD  185 (298)
T ss_pred             --cCCHHHHHHHHHHhCCCC-CCcCChhhccC
Confidence              357888999998887654 45677666543

>PRK00093 GTP-binding protein Der; Reviewed

Probab=95.98  E-value=0.16  Score=49.39  Aligned_cols=77  Identities=16%  Similarity=0.112  Sum_probs=50.9

Q ss_pred             eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHH----HHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 036659           23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGK----EIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFG   98 (300)
Q Consensus        23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~k----EI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG   98 (300)
                      ..+|..+.+||||       |+-+.....+.+..    ...+++    +..|++|+|+.+...+|..+...+..+.. .|
T Consensus       217 ~~~~~~~~lvDT~-------G~~~~~~~~~~~e~~~~~~~~~~~----~~ad~~ilViD~~~~~~~~~~~i~~~~~~-~~  284 (435)
T PRK00093        217 ERDGQKYTLIDTA-------GIRRKGKVTEGVEKYSVIRTLKAI----ERADVVLLVIDATEGITEQDLRIAGLALE-AG  284 (435)
T ss_pred             EECCeeEEEEECC-------CCCCCcchhhHHHHHHHHHHHHHH----HHCCEEEEEEeCCCCCCHHHHHHHHHHHH-cC
Confidence            4689999999999       65443222221211    112233    46689999999998899998876665543 23


Q ss_pred             hhhhcceEEEEEcCCCC
Q 036659           99 KNVFDYMIVVFTGGDEL  115 (300)
Q Consensus        99 ~~i~~y~IVlFT~gD~L  115 (300)
                          ..+||+++--|.+
T Consensus       285 ----~~~ivv~NK~Dl~  297 (435)
T PRK00093        285 ----RALVIVVNKWDLV  297 (435)
T ss_pred             ----CcEEEEEECccCC
Confidence                4678888877865

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=95.98  E-value=0.77  Score=45.99  Aligned_cols=80  Identities=20%  Similarity=0.118  Sum_probs=45.2

Q ss_pred             EEEEEeCCCCcccCcccCCCCCChHHHHHHHHH--------------hhccCCCCCeEEEEEEeCC-CCCCHHHHHHHHH
Q 036659           28 LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVT--------------CIGMAKDGIHAVLVVFSVR-SRFSQEEEAALHS   92 (300)
Q Consensus        28 ~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~--------------ci~l~~pGpHA~LLV~~v~-~rfT~EE~~al~~   92 (300)
                      .++||||||+=    ...|-+.+-+-+..-|..              --.+....+||.|..++-. ..+++-|-+++..
T Consensus        83 ~l~vIDtpGfG----D~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~  158 (373)
T COG5019          83 NLTVIDTPGFG----DFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKR  158 (373)
T ss_pred             EEEEeccCCcc----ccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHH
Confidence            68999999441    123444444444333322              1135667899999988743 3667777666665


Q ss_pred             HHHHhchhhhcceEEEEEcCCCCCC
Q 036659           93 WQTLFGKNVFDYMIVVFTGGDELED  117 (300)
Q Consensus        93 lq~lFG~~i~~y~IVlFT~gD~Le~  117 (300)
                      |-+.      =+.|=|..-.|-|.+
T Consensus       159 ls~~------vNlIPVI~KaD~lT~  177 (373)
T COG5019         159 LSKR------VNLIPVIAKADTLTD  177 (373)
T ss_pred             Hhcc------cCeeeeeeccccCCH
Confidence            5321      234444555554443

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=95.88  E-value=0.038  Score=48.28  Aligned_cols=72  Identities=15%  Similarity=0.056  Sum_probs=51.7

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcce
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYM  105 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~  105 (300)
                      +..+.++|||       |+.+.....+..    .+-+  .-++.++||+|.+  .+||+.|...++.++.. |.    ..
T Consensus        51 ~~~l~l~Dtp-------G~~~~~~~~~~~----l~~~--~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~-~~----~~  110 (197)
T cd04104          51 FPNVTLWDLP-------GIGSTAFPPDDY----LEEM--KFSEYDFFIIISS--TRFSSNDVKLAKAIQCM-GK----KF  110 (197)
T ss_pred             CCCceEEeCC-------CCCcccCCHHHH----HHHh--CccCcCEEEEEeC--CCCCHHHHHHHHHHHHh-CC----CE
Confidence            4579999999       877655444333    2222  2457888888854  48999999999999885 53    45


Q ss_pred             EEEEEcCCCCCC
Q 036659          106 IVVFTGGDELED  117 (300)
Q Consensus       106 IVlFT~gD~Le~  117 (300)
                      ++|+|--|.+..
T Consensus       111 ilV~nK~D~~~~  122 (197)
T cd04104         111 YFVRTKVDRDLS  122 (197)
T ss_pred             EEEEecccchhh
Confidence            899999887653

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=95.87  E-value=0.34  Score=46.93  Aligned_cols=83  Identities=13%  Similarity=0.133  Sum_probs=46.5

Q ss_pred             eee-CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh
Q 036659           22 IRI-QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN  100 (300)
Q Consensus        22 ~~~-~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~  100 (300)
                      ..+ ++..++++|||       |+.+.......+.....+.+.    ..+++|+|+.+...-+-++...+......+.+.
T Consensus       200 v~~~~~~~~~i~D~P-------Gli~ga~~~~gLg~~flrhie----~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~  268 (335)
T PRK12299        200 VRVDDYKSFVIADIP-------GLIEGASEGAGLGHRFLKHIE----RTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPE  268 (335)
T ss_pred             EEeCCCcEEEEEeCC-------CccCCCCccccHHHHHHHHhh----hcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhh
Confidence            345 67899999999       886533222234444434332    457999999987433444443333322333333


Q ss_pred             hh-cceEEEEEcCCCC
Q 036659          101 VF-DYMIVVFTGGDEL  115 (300)
Q Consensus       101 i~-~y~IVlFT~gD~L  115 (300)
                      .. +-.|||++--|-+
T Consensus       269 L~~kp~IIV~NKiDL~  284 (335)
T PRK12299        269 LADKPRILVLNKIDLL  284 (335)
T ss_pred             cccCCeEEEEECcccC
Confidence            22 3466777766644

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=95.84  E-value=0.027  Score=49.41  Aligned_cols=93  Identities=14%  Similarity=0.143  Sum_probs=56.6

Q ss_pred             CCCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHH
Q 036659            9 RFGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEA   88 (300)
Q Consensus         9 ~~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~   88 (300)
                      ..|+|..+..+ ....++..+.+||||       |+|+.+..+.+  +.+.+ -.+....|.++++|+... .+ +.+..
T Consensus        30 ~pG~Tv~~~~g-~~~~~~~~~~lvDlP-------G~ysl~~~s~e--e~v~~-~~l~~~~~D~ii~VvDa~-~l-~r~l~   96 (156)
T PF02421_consen   30 WPGTTVEKKEG-IFKLGDQQVELVDLP-------GIYSLSSKSEE--ERVAR-DYLLSEKPDLIIVVVDAT-NL-ERNLY   96 (156)
T ss_dssp             STTSSSEEEEE-EEEETTEEEEEEE-----------SSSSSSSHH--HHHHH-HHHHHTSSSEEEEEEEGG-GH-HHHHH
T ss_pred             CCCCCeeeeeE-EEEecCceEEEEECC-------CcccCCCCCcH--HHHHH-HHHhhcCCCEEEEECCCC-CH-HHHHH
Confidence            35788887665 356789999999999       99987654321  12222 222256799999999986 54 33333


Q ss_pred             HHHHHHHHhchhhhcceEEEEEcCCCCCCCc
Q 036659           89 ALHSWQTLFGKNVFDYMIVVFTGGDELEDND  119 (300)
Q Consensus        89 al~~lq~lFG~~i~~y~IVlFT~gD~Le~~~  119 (300)
                      .+..+.++ |    .-+||+++--|.....+
T Consensus        97 l~~ql~e~-g----~P~vvvlN~~D~a~~~g  122 (156)
T PF02421_consen   97 LTLQLLEL-G----IPVVVVLNKMDEAERKG  122 (156)
T ss_dssp             HHHHHHHT-T----SSEEEEEETHHHHHHTT
T ss_pred             HHHHHHHc-C----CCEEEEEeCHHHHHHcC
Confidence            33333332 3    45999999888776543

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd04171 SelB SelB subfamily

Probab=95.78  E-value=0.22  Score=40.09  Aligned_cols=71  Identities=21%  Similarity=0.215  Sum_probs=43.6

Q ss_pred             eeC-CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           23 RIQ-VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        23 ~~~-Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      .+. +..+.++|||       |.       +.....+.    ....|.+++|+|+.+...+..+....+..+ ...|.  
T Consensus        46 ~~~~~~~~~~~Dtp-------G~-------~~~~~~~~----~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~-~~~~~--  104 (164)
T cd04171          46 DLPSGKRLGFIDVP-------GH-------EKFIKNML----AGAGGIDLVLLVVAADEGIMPQTREHLEIL-ELLGI--  104 (164)
T ss_pred             EecCCcEEEEEECC-------Ch-------HHHHHHHH----hhhhcCCEEEEEEECCCCccHhHHHHHHHH-HHhCC--
Confidence            344 7899999999       74       11222222    234589999999999743434444444433 22342  


Q ss_pred             hcceEEEEEcCCCC
Q 036659          102 FDYMIVVFTGGDEL  115 (300)
Q Consensus       102 ~~y~IVlFT~gD~L  115 (300)
                       ..+|+++|--|-.
T Consensus       105 -~~~ilv~NK~Dl~  117 (164)
T cd04171         105 -KRGLVVLTKADLV  117 (164)
T ss_pred             -CcEEEEEECcccc
Confidence             3688899888754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>smart00053 DYNc Dynamin, GTPase

Probab=95.76  E-value=0.11  Score=48.49  Aligned_cols=90  Identities=14%  Similarity=0.105  Sum_probs=55.2

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCC--ChHHHHHHHHHhhcc-CCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhchhh
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSA--GSKFVGKEIVTCIGM-AKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFGKNV  101 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~--~~e~v~kEI~~ci~l-~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG~~i  101 (300)
                      .-.+++||||       |+++...  .++.+.+.|..-+.. ...-...+|+|++....++..+. ...+.+    . ..
T Consensus       124 ~~~ltLIDlP-------Gl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l----d-~~  191 (240)
T smart00053      124 VLNLTLIDLP-------GITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV----D-PQ  191 (240)
T ss_pred             CCceEEEeCC-------CccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH----H-Hc
Confidence            3579999999       8885421  224444444443322 22223488899988767777663 333333    2 23


Q ss_pred             hcceEEEEEcCCCCCCCcccHHHhhhh
Q 036659          102 FDYMIVVFTGGDELEDNDETLEDYLGR  128 (300)
Q Consensus       102 ~~y~IVlFT~gD~Le~~~~tledyl~~  128 (300)
                      .+.+|+|+|--|.+... ..+-+.+.+
T Consensus       192 ~~rti~ViTK~D~~~~~-~~~~~~~~~  217 (240)
T smart00053      192 GERTIGVITKLDLMDEG-TDARDILEN  217 (240)
T ss_pred             CCcEEEEEECCCCCCcc-HHHHHHHhC
Confidence            57899999999988753 346666654

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=95.46  E-value=0.02  Score=47.48  Aligned_cols=67  Identities=13%  Similarity=0.124  Sum_probs=45.8

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcce
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYM  105 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~  105 (300)
                      ...+.+||||       |+.+.......+..+   .+    +--+++|+|++....+++.+...+......-+    +.+
T Consensus       100 ~~~~~lvDtP-------G~~~~~~~~~~~~~~---~~----~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~----~~~  161 (168)
T PF00350_consen  100 LRNLTLVDTP-------GLNSTNSEHTEITEE---YL----PKADVVIFVVDANQDLTESDMEFLKQMLDPDK----SRT  161 (168)
T ss_dssp             SCSEEEEEEE-------EBHSSHTTTSHHHHH---HH----STTEEEEEEEETTSTGGGHHHHHHHHHHTTTC----SSE
T ss_pred             ccceEEEeCC-------ccccchhhhHHHHHH---hh----ccCCEEEEEeccCcccchHHHHHHHHHhcCCC----CeE
Confidence            3468999999       988755544433232   22    35589999999987788887776666554433    348


Q ss_pred             EEEEE
Q 036659          106 IVVFT  110 (300)
Q Consensus       106 IVlFT  110 (300)
                      |+|+|
T Consensus       162 i~V~n  166 (168)
T PF00350_consen  162 IFVLN  166 (168)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            88887

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=95.35  E-value=0.2  Score=44.04  Aligned_cols=69  Identities=12%  Similarity=0.186  Sum_probs=43.1

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCC-CCHHHHHHHHHHHHHhchhhhcc
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSR-FSQEEEAALHSWQTLFGKNVFDY  104 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r-fT~EE~~al~~lq~lFG~~i~~y  104 (300)
                      ++.+++||||       |-       +.    +...+..+..+++++|+|+.+... .+.+....+..+. ..|   ...
T Consensus        82 ~~~i~~iDtP-------G~-------~~----~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~-~~~---~~~  139 (203)
T cd01888          82 VRHVSFVDCP-------GH-------EI----LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALE-IMG---LKH  139 (203)
T ss_pred             ccEEEEEECC-------Ch-------HH----HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHH-HcC---CCc
Confidence            3899999999       72       22    233333444588999999998732 3333344444442 223   246


Q ss_pred             eEEEEEcCCCCC
Q 036659          105 MIVVFTGGDELE  116 (300)
Q Consensus       105 ~IVlFT~gD~Le  116 (300)
                      +|||+|--|...
T Consensus       140 iiivvNK~Dl~~  151 (203)
T cd01888         140 IIIVQNKIDLVK  151 (203)
T ss_pred             EEEEEEchhccC
Confidence            888999888553

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=95.31  E-value=0.071  Score=56.12  Aligned_cols=91  Identities=12%  Similarity=0.020  Sum_probs=64.3

Q ss_pred             CCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHH
Q 036659           10 FGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAA   89 (300)
Q Consensus        10 ~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~a   89 (300)
                      .++|..+... ...++|+.+.+||||       |+...   .+.+.+.+..+...+..+.|++|+|+.....++..+...
T Consensus       307 pGvT~d~~~~-~~~~~~~~~~liDT~-------G~~~~---~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i  375 (712)
T PRK09518        307 PGVTRDRVSY-DAEWAGTDFKLVDTG-------GWEAD---VEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERI  375 (712)
T ss_pred             CCeeEEEEEE-EEEECCEEEEEEeCC-------CcCCC---CccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHH
Confidence            4667666554 356889999999999       64421   123556677776666779999999999987899988877


Q ss_pred             HHHHHHHhchhhhcceEEEEEcCCCCC
Q 036659           90 LHSWQTLFGKNVFDYMIVVFTGGDELE  116 (300)
Q Consensus        90 l~~lq~lFG~~i~~y~IVlFT~gD~Le  116 (300)
                      ...+..     .-.-+|+|++--|...
T Consensus       376 ~~~Lr~-----~~~pvIlV~NK~D~~~  397 (712)
T PRK09518        376 VRMLRR-----AGKPVVLAVNKIDDQA  397 (712)
T ss_pred             HHHHHh-----cCCCEEEEEECccccc
Confidence            766653     2356677777666443

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=95.24  E-value=0.26  Score=40.04  Aligned_cols=67  Identities=13%  Similarity=0.057  Sum_probs=42.9

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcce
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYM  105 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~  105 (300)
                      +..+++||||       |..+..       . +   ...+.++.|++|+|+.+....+.+....+..+.. +|    ...
T Consensus        49 ~~~~~iiDtp-------G~~~~~-------~-~---~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~-~~----~p~  105 (168)
T cd01887          49 IPGITFIDTP-------GHEAFT-------N-M---RARGASLTDIAILVVAADDGVMPQTIEAIKLAKA-AN----VPF  105 (168)
T ss_pred             cceEEEEeCC-------CcHHHH-------H-H---HHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHH-cC----CCE
Confidence            7899999999       753211       1 1   1122357899999999975555555555554432 33    357


Q ss_pred             EEEEEcCCCC
Q 036659          106 IVVFTGGDEL  115 (300)
Q Consensus       106 IVlFT~gD~L  115 (300)
                      +||+|.-|-.
T Consensus       106 ivv~NK~Dl~  115 (168)
T cd01887         106 IVALNKIDKP  115 (168)
T ss_pred             EEEEEceecc
Confidence            8888988754

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=95.14  E-value=0.18  Score=52.68  Aligned_cols=70  Identities=17%  Similarity=0.190  Sum_probs=48.8

Q ss_pred             CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659           25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY  104 (300)
Q Consensus        25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y  104 (300)
                      +|+.+++||||       |-       +...+.+.    -...|.+++|||+.++..+.+.....+..+ ..+|   ..+
T Consensus        49 ~g~~i~~IDtP-------Gh-------e~fi~~m~----~g~~~~D~~lLVVda~eg~~~qT~ehl~il-~~lg---i~~  106 (614)
T PRK10512         49 DGRVLGFIDVP-------GH-------EKFLSNML----AGVGGIDHALLVVACDDGVMAQTREHLAIL-QLTG---NPM  106 (614)
T ss_pred             CCcEEEEEECC-------CH-------HHHHHHHH----HHhhcCCEEEEEEECCCCCcHHHHHHHHHH-HHcC---CCe
Confidence            68899999999       74       22223333    334589999999999866777777666544 4455   356


Q ss_pred             eEEEEEcCCCCC
Q 036659          105 MIVVFTGGDELE  116 (300)
Q Consensus       105 ~IVlFT~gD~Le  116 (300)
                      .|||+|--|...
T Consensus       107 iIVVlNKiDlv~  118 (614)
T PRK10512        107 LTVALTKADRVD  118 (614)
T ss_pred             EEEEEECCccCC
Confidence            789999888653

>PRK03003 GTP-binding protein Der; Reviewed

Probab=94.94  E-value=0.1  Score=52.10  Aligned_cols=89  Identities=16%  Similarity=0.039  Sum_probs=59.1

Q ss_pred             CCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHH
Q 036659           10 FGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAA   89 (300)
Q Consensus        10 ~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~a   89 (300)
                      .++|...... ...++|+.+.++|||       |+-.   ....+...+......+..+.|++|+|+.+..+.|..+...
T Consensus        70 ~gvT~d~~~~-~~~~~~~~~~l~DT~-------G~~~---~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i  138 (472)
T PRK03003         70 PGVTRDRVSY-DAEWNGRRFTVVDTG-------GWEP---DAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAV  138 (472)
T ss_pred             CCCCEeeEEE-EEEECCcEEEEEeCC-------CcCC---cchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHH
Confidence            4555555444 356789999999999       6532   1123445555555556678899999999988888887766


Q ss_pred             HHHHHHHhchhhhcceEEEEEcCCC
Q 036659           90 LHSWQTLFGKNVFDYMIVVFTGGDE  114 (300)
Q Consensus        90 l~~lq~lFG~~i~~y~IVlFT~gD~  114 (300)
                      ...++.     .-.-+|+|.+--|.
T Consensus       139 ~~~l~~-----~~~piilV~NK~Dl  158 (472)
T PRK03003        139 ARVLRR-----SGKPVILAANKVDD  158 (472)
T ss_pred             HHHHHH-----cCCCEEEEEECccC
Confidence            666653     22456666666663

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=94.89  E-value=0.78  Score=45.46  Aligned_cols=132  Identities=12%  Similarity=0.113  Sum_probs=70.3

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCC----HHH-HHHHHHHHHHhchh
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFS----QEE-EAALHSWQTLFGKN  100 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT----~EE-~~al~~lq~lFG~~  100 (300)
                      ++.+.++|||       |+.........+.....+-+    ...+++|+|+.+. .++    .++ ...++.+. .+...
T Consensus       206 ~~~i~~vDtP-------Gi~~~a~~~~~Lg~~~l~~i----~radvlL~VVD~s-~~~~~d~~e~~~~l~~eL~-~~~~~  272 (390)
T PRK12298        206 ERSFVVADIP-------GLIEGASEGAGLGIRFLKHL----ERCRVLLHLIDIA-PIDGSDPVENARIIINELE-KYSPK  272 (390)
T ss_pred             CcEEEEEeCC-------CccccccchhhHHHHHHHHH----HhCCEEEEEeccC-cccccChHHHHHHHHHHHH-hhhhh
Confidence            5779999999       88753322222333333322    3568999999875 221    122 22223332 22222


Q ss_pred             h-hcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcC--CeEEEEeC
Q 036659          101 V-FDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCD--NRCVLFDN  177 (300)
Q Consensus       101 i-~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~--~R~~~FnN  177 (300)
                      . -+-.|||+|--|.+..  ..+.+.+.        .                           +.+..+  ..++.+.-
T Consensus       273 L~~kP~IlVlNKiDl~~~--~el~~~l~--------~---------------------------l~~~~~~~~~Vi~ISA  315 (390)
T PRK12298        273 LAEKPRWLVFNKIDLLDE--EEAEERAK--------A---------------------------IVEALGWEGPVYLISA  315 (390)
T ss_pred             hcCCCEEEEEeCCccCCh--HHHHHHHH--------H---------------------------HHHHhCCCCCEEEEEC
Confidence            1 2456888887775432  23333332        2                           222222  23555655


Q ss_pred             CCcchhhchHHHHHHHHHHHHHHHHcCCCCCChHHHH
Q 036659          178 KTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIFV  214 (300)
Q Consensus       178 k~~de~~~~~Qv~eLL~~Ve~mv~~NgG~~yt~e~f~  214 (300)
                      ++      ...+.+|++.|-..+... -..|.+++..
T Consensus       316 ~t------g~GIdeLl~~I~~~L~~~-~~~~~~~~~t  345 (390)
T PRK12298        316 AS------GLGVKELCWDLMTFIEEN-PREEAEEAEA  345 (390)
T ss_pred             CC------CcCHHHHHHHHHHHhhhC-cccCCccccc
Confidence            43      257888998888887653 3345555543

>cd04165 GTPBP1_like GTPBP1-like

Probab=94.88  E-value=0.77  Score=41.72  Aligned_cols=74  Identities=14%  Similarity=-0.046  Sum_probs=52.6

Q ss_pred             eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh
Q 036659           23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF  102 (300)
Q Consensus        23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~  102 (300)
                      ..+|+.+++||||       |.-       ...++..+++.  ...+|++++|+.+...++..+...+..+.. .|-   
T Consensus        80 ~~~~~~i~liDtp-------G~~-------~~~~~~~~~~~--~~~~D~~llVvda~~g~~~~d~~~l~~l~~-~~i---  139 (224)
T cd04165          80 EKSSKLVTFIDLA-------GHE-------RYLKTTLFGLT--GYAPDYAMLVVAANAGIIGMTKEHLGLALA-LNI---  139 (224)
T ss_pred             eeCCcEEEEEECC-------CcH-------HHHHHHHHhhc--ccCCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---
Confidence            4568999999999       632       23345555542  235889999999887888888888887654 342   


Q ss_pred             cceEEEEEcCCCCCC
Q 036659          103 DYMIVVFTGGDELED  117 (300)
Q Consensus       103 ~y~IVlFT~gD~Le~  117 (300)
                       -.||++|--|.+..
T Consensus       140 -p~ivvvNK~D~~~~  153 (224)
T cd04165         140 -PVFVVVTKIDLAPA  153 (224)
T ss_pred             -CEEEEEECccccCH
Confidence             35889998887643

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd01850 CDC_Septin CDC/Septin

Probab=94.82  E-value=0.23  Score=46.51  Aligned_cols=80  Identities=19%  Similarity=0.101  Sum_probs=52.9

Q ss_pred             eCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHh------------------hccCCCCCeEEEEEEeCCC-CC
Q 036659           24 IQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTC------------------IGMAKDGIHAVLVVFSVRS-RF   82 (300)
Q Consensus        24 ~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~c------------------i~l~~pGpHA~LLV~~v~~-rf   82 (300)
                      .+|  ..++|||||       |+.|... .....+.|...                  ......-+|++|+++.... .+
T Consensus        58 ~~g~~~~l~iiDTp-------Gfgd~~~-~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l  129 (276)
T cd01850          58 ENGVKLKLTVIDTP-------GFGDNIN-NSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGL  129 (276)
T ss_pred             ECCEEEEEEEEecC-------Ccccccc-chhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCC
Confidence            456  469999999       7666532 22222333321                  1222346899999998753 68


Q ss_pred             CHHHHHHHHHHHHHhchhhhcceEEEEEcCCCCCC
Q 036659           83 SQEEEAALHSWQTLFGKNVFDYMIVVFTGGDELED  117 (300)
Q Consensus        83 T~EE~~al~~lq~lFG~~i~~y~IVlFT~gD~Le~  117 (300)
                      ++.|...++.+..      ....|+|+|-.|.+..
T Consensus       130 ~~~D~~~lk~l~~------~v~vi~VinK~D~l~~  158 (276)
T cd01850         130 KPLDIEFMKRLSK------RVNIIPVIAKADTLTP  158 (276)
T ss_pred             CHHHHHHHHHHhc------cCCEEEEEECCCcCCH
Confidence            8888888888764      2467899999998864

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>COG1160 Predicted GTPases [General function prediction only]

Probab=94.69  E-value=0.22  Score=50.79  Aligned_cols=91  Identities=18%  Similarity=0.056  Sum_probs=66.9

Q ss_pred             CCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHH
Q 036659           10 FGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAA   89 (300)
Q Consensus        10 ~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~a   89 (300)
                      .|||.--... .+.|.|+.+.||||+       ||-+.+  .+.+.++|..=...+-.-.+++|+|+..+.-.|++|+..
T Consensus        35 pGvTRDr~y~-~~~~~~~~f~lIDTg-------Gl~~~~--~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~i  104 (444)
T COG1160          35 PGVTRDRIYG-DAEWLGREFILIDTG-------GLDDGD--EDELQELIREQALIAIEEADVILFVVDGREGITPADEEI  104 (444)
T ss_pred             CCCccCCccc-eeEEcCceEEEEECC-------CCCcCC--chHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH
Confidence            4677766665 589999999999999       776533  345666666655556667889999999987899999999


Q ss_pred             HHHHHHHhchhhhcceEEEEEcCCCC
Q 036659           90 LHSWQTLFGKNVFDYMIVVFTGGDEL  115 (300)
Q Consensus        90 l~~lq~lFG~~i~~y~IVlFT~gD~L  115 (300)
                      ...|..     -.+-.|+|.---|..
T Consensus       105 a~~Lr~-----~~kpviLvvNK~D~~  125 (444)
T COG1160         105 AKILRR-----SKKPVILVVNKIDNL  125 (444)
T ss_pred             HHHHHh-----cCCCEEEEEEcccCc
Confidence            988872     234556665555554

>PRK12736 elongation factor Tu; Reviewed

Probab=94.66  E-value=0.27  Score=48.08  Aligned_cols=70  Identities=13%  Similarity=0.195  Sum_probs=47.4

Q ss_pred             eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659           24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD  103 (300)
Q Consensus        24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~  103 (300)
                      .+++.+++||||       |.-      +++ .++...    ..+.|++|||+....-.....+..+..+..+ |   ..
T Consensus        72 ~~~~~i~~iDtP-------Gh~------~f~-~~~~~~----~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~-g---~~  129 (394)
T PRK12736         72 TEKRHYAHVDCP-------GHA------DYV-KNMITG----AAQMDGAILVVAATDGPMPQTREHILLARQV-G---VP  129 (394)
T ss_pred             CCCcEEEEEECC-------CHH------HHH-HHHHHH----HhhCCEEEEEEECCCCCchhHHHHHHHHHHc-C---CC
Confidence            467899999999       631      333 333333    3478999999998755666666666555433 3   46


Q ss_pred             ceEEEEEcCCCC
Q 036659          104 YMIVVFTGGDEL  115 (300)
Q Consensus       104 y~IVlFT~gD~L  115 (300)
                      ++||++|--|..
T Consensus       130 ~~IvviNK~D~~  141 (394)
T PRK12736        130 YLVVFLNKVDLV  141 (394)
T ss_pred             EEEEEEEecCCc
Confidence            788899988865

>cd01898 Obg Obg subfamily

Probab=94.55  E-value=1.3  Score=36.23  Aligned_cols=82  Identities=18%  Similarity=0.144  Sum_probs=41.2

Q ss_pred             eeCCE-EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCC-CCHHHH-HHHHHHHHHhch
Q 036659           23 RIQVV-LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSR-FSQEEE-AALHSWQTLFGK   99 (300)
Q Consensus        23 ~~~Gr-~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r-fT~EE~-~al~~lq~lFG~   99 (300)
                      ..++. .+.++|||       |+.+.......+.....+-+    ...+++++|+.+... -+-+.. ...+.+... +.
T Consensus        43 ~~~~~~~~~l~Dtp-------G~~~~~~~~~~~~~~~~~~~----~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~-~~  110 (170)
T cd01898          43 RVDDGRSFVVADIP-------GLIEGASEGKGLGHRFLRHI----ERTRLLLHVIDLSGDDDPVEDYKTIRNELELY-NP  110 (170)
T ss_pred             EcCCCCeEEEEecC-------cccCcccccCCchHHHHHHH----HhCCEEEEEEecCCCCCHHHHHHHHHHHHHHh-Cc
Confidence            34565 89999999       87543222111222211111    256899999998733 122222 222223222 22


Q ss_pred             hh-hcceEEEEEcCCCCC
Q 036659          100 NV-FDYMIVVFTGGDELE  116 (300)
Q Consensus       100 ~i-~~y~IVlFT~gD~Le  116 (300)
                      .. -.-.+||.+.-|...
T Consensus       111 ~~~~~p~ivv~NK~Dl~~  128 (170)
T cd01898         111 ELLEKPRIVVLNKIDLLD  128 (170)
T ss_pred             cccccccEEEEEchhcCC
Confidence            21 234567777777443

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd00154 Rab Rab family

Probab=94.45  E-value=0.96  Score=35.48  Aligned_cols=69  Identities=17%  Similarity=0.141  Sum_probs=41.6

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh--hc
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV--FD  103 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i--~~  103 (300)
                      +..+.++|||       |...       .......    +-+..+++++|+.+..   .+.-..+..+...|-...  -.
T Consensus        48 ~~~~~l~D~~-------g~~~-------~~~~~~~----~~~~~d~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~  106 (159)
T cd00154          48 TVKLQIWDTA-------GQER-------FRSITPS----YYRGAHGAILVYDITN---RESFENLDKWLKELKEYAPENI  106 (159)
T ss_pred             EEEEEEEecC-------ChHH-------HHHHHHH----HhcCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCC
Confidence            4678899999       7522       1122222    2346899999999862   333344444444444433  35


Q ss_pred             ceEEEEEcCCCC
Q 036659          104 YMIVVFTGGDEL  115 (300)
Q Consensus       104 y~IVlFT~gD~L  115 (300)
                      .++|+.|.-|..
T Consensus       107 p~ivv~nK~D~~  118 (159)
T cd00154         107 PIILVGNKIDLE  118 (159)
T ss_pred             cEEEEEEccccc
Confidence            678888988865

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd01889 SelB_euk SelB subfamily

Probab=94.37  E-value=0.36  Score=41.45  Aligned_cols=68  Identities=15%  Similarity=0.142  Sum_probs=43.4

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcce
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYM  105 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~  105 (300)
                      +..++++|||       |..+           +.+.+..+...++++++|+.+....+..+...+.. ...+|    ...
T Consensus        67 ~~~~~i~Dtp-------G~~~-----------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~-~~~~~----~~~  123 (192)
T cd01889          67 NLQITLVDCP-------GHAS-----------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVI-GEILC----KKL  123 (192)
T ss_pred             CceEEEEECC-------CcHH-----------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHH-HHHcC----CCE
Confidence            7799999999       7521           22223233457889999999875566555444432 23333    367


Q ss_pred             EEEEEcCCCCC
Q 036659          106 IVVFTGGDELE  116 (300)
Q Consensus       106 IVlFT~gD~Le  116 (300)
                      ||+++--|...
T Consensus       124 iiv~NK~Dl~~  134 (192)
T cd01889         124 IVVLNKIDLIP  134 (192)
T ss_pred             EEEEECcccCC
Confidence            88888888653

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=94.26  E-value=0.49  Score=40.67  Aligned_cols=69  Identities=19%  Similarity=0.179  Sum_probs=50.5

Q ss_pred             eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659           24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD  103 (300)
Q Consensus        24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~  103 (300)
                      .+++.+++||||       |-       ....+++.+++.    .++++|+|+....-++......+..+. .+|-.   
T Consensus        67 ~~~~~i~~iDtP-------G~-------~~f~~~~~~~~~----~~D~ailvVda~~g~~~~~~~~l~~~~-~~~~p---  124 (188)
T PF00009_consen   67 ENNRKITLIDTP-------GH-------EDFIKEMIRGLR----QADIAILVVDANDGIQPQTEEHLKILR-ELGIP---  124 (188)
T ss_dssp             ESSEEEEEEEES-------SS-------HHHHHHHHHHHT----TSSEEEEEEETTTBSTHHHHHHHHHHH-HTT-S---
T ss_pred             ccccceeecccc-------cc-------cceeecccceec----ccccceeeeeccccccccccccccccc-ccccc---
Confidence            679999999999       73       223466777755    568999999987677877777666653 23332   


Q ss_pred             ceEEEEEcCCCC
Q 036659          104 YMIVVFTGGDEL  115 (300)
Q Consensus       104 y~IVlFT~gD~L  115 (300)
                       +||++|--|.+
T Consensus       125 -~ivvlNK~D~~  135 (188)
T PF00009_consen  125 -IIVVLNKMDLI  135 (188)
T ss_dssp             -EEEEEETCTSS
T ss_pred             -eEEeeeeccch
Confidence             89999998987

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=94.21  E-value=1.5  Score=42.43  Aligned_cols=83  Identities=14%  Similarity=0.135  Sum_probs=43.9

Q ss_pred             eeCC-EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCC---CCHHHHHHHHHHHHHhc
Q 036659           23 RIQV-VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSR---FSQEEEAALHSWQTLFG   98 (300)
Q Consensus        23 ~~~G-r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r---fT~EE~~al~~lq~lFG   98 (300)
                      .+++ ..+.++|||       |+.+.......+.....+.+    ...+++|+|+.+...   -+.++-..+......+.
T Consensus       200 ~~~~~~~~~i~D~P-------Gli~~a~~~~gLg~~flrhi----erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~  268 (329)
T TIGR02729       200 RVDDGRSFVIADIP-------GLIEGASEGAGLGHRFLKHI----ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYS  268 (329)
T ss_pred             EeCCceEEEEEeCC-------CcccCCcccccHHHHHHHHH----HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhh
Confidence            4455 899999999       87643211112333333333    245799999998732   12233333322222333


Q ss_pred             hhh-hcceEEEEEcCCCCC
Q 036659           99 KNV-FDYMIVVFTGGDELE  116 (300)
Q Consensus        99 ~~i-~~y~IVlFT~gD~Le  116 (300)
                      ... -+-.|||++--|.+.
T Consensus       269 ~~l~~kp~IIV~NK~DL~~  287 (329)
T TIGR02729       269 PELAEKPRIVVLNKIDLLD  287 (329)
T ss_pred             hhhccCCEEEEEeCccCCC
Confidence            332 245677777667543

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=94.03  E-value=3  Score=41.88  Aligned_cols=76  Identities=22%  Similarity=0.228  Sum_probs=47.6

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHH-HHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKE-IVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN  100 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kE-I~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~  100 (300)
                      ..++|..+.++|||       |+-++.   +.+..+ +.+... ...+.+++|+|+.+..+.+.++...+.   .    .
T Consensus       258 i~~~g~~i~l~DT~-------G~~~~~---~~ie~~gi~~~~~-~~~~aD~il~VvD~s~~~s~~~~~~l~---~----~  319 (449)
T PRK05291        258 INLDGIPLRLIDTA-------GIRETD---DEVEKIGIERSRE-AIEEADLVLLVLDASEPLTEEDDEILE---E----L  319 (449)
T ss_pred             EEECCeEEEEEeCC-------CCCCCc---cHHHHHHHHHHHH-HHHhCCEEEEEecCCCCCChhHHHHHH---h----c
Confidence            45789999999999       765432   222222 222222 245788999999998777777544332   2    1


Q ss_pred             hhcceEEEEEcCCCC
Q 036659          101 VFDYMIVVFTGGDEL  115 (300)
Q Consensus       101 i~~y~IVlFT~gD~L  115 (300)
                      .-...|||++--|-.
T Consensus       320 ~~~piiiV~NK~DL~  334 (449)
T PRK05291        320 KDKPVIVVLNKADLT  334 (449)
T ss_pred             CCCCcEEEEEhhhcc
Confidence            124678888877744

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=93.98  E-value=1.6  Score=37.48  Aligned_cols=72  Identities=18%  Similarity=0.171  Sum_probs=42.2

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ...++..+.++|||       |.-+.       ......+    ..+.+++++|+.+...........+..   +...+ 
T Consensus        60 ~~~~~~~~~l~Dtp-------G~~~~-------~~~~~~~----~~~~d~~ilV~d~~~~~~~~~~~~~~~---~~~~~-  117 (194)
T cd01891          60 VTYKDTKINIVDTP-------GHADF-------GGEVERV----LSMVDGVLLLVDASEGPMPQTRFVLKK---ALELG-  117 (194)
T ss_pred             EEECCEEEEEEECC-------CcHHH-------HHHHHHH----HHhcCEEEEEEECCCCccHHHHHHHHH---HHHcC-
Confidence            34678899999999       75332       2233333    358899999999874433333332222   22222 


Q ss_pred             hcceEEEEEcCCCCC
Q 036659          102 FDYMIVVFTGGDELE  116 (300)
Q Consensus       102 ~~y~IVlFT~gD~Le  116 (300)
                       .-.||+++--|...
T Consensus       118 -~p~iiv~NK~Dl~~  131 (194)
T cd01891         118 -LKPIVVINKIDRPD  131 (194)
T ss_pred             -CCEEEEEECCCCCC
Confidence             23577788777543

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=93.97  E-value=1.7  Score=46.98  Aligned_cols=93  Identities=12%  Similarity=0.048  Sum_probs=53.6

Q ss_pred             CCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChH-HHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHH
Q 036659           10 FGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSK-FVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEA   88 (300)
Q Consensus        10 ~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e-~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~   88 (300)
                      .|+|...... ...+++..+++||||       |.++.+...+ ....|...+..+....++++++|+... .+.. ...
T Consensus        34 pGvTve~k~g-~~~~~~~~i~lvDtP-------G~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat-~ler-~l~  103 (772)
T PRK09554         34 AGVTVERKEG-QFSTTDHQVTLVDLP-------GTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDAS-NLER-NLY  103 (772)
T ss_pred             CCceEeeEEE-EEEcCceEEEEEECC-------CccccccccccccHHHHHHHHHHhccCCCEEEEEecCC-cchh-hHH
Confidence            3455544333 245678899999999       8887654211 122233333344556889999999876 4422 222


Q ss_pred             HHHHHHHHhchhhhcceEEEEEcCCCCCC
Q 036659           89 ALHSWQTLFGKNVFDYMIVVFTGGDELED  117 (300)
Q Consensus        89 al~~lq~lFG~~i~~y~IVlFT~gD~Le~  117 (300)
                      ....+.+ .|    .-+||+.+--|..+.
T Consensus       104 l~~ql~e-~g----iPvIvVlNK~Dl~~~  127 (772)
T PRK09554        104 LTLQLLE-LG----IPCIVALNMLDIAEK  127 (772)
T ss_pred             HHHHHHH-cC----CCEEEEEEchhhhhc
Confidence            2222222 22    457888887786543

>TIGR00485 EF-Tu translation elongation factor TU

Probab=93.68  E-value=0.4  Score=46.83  Aligned_cols=71  Identities=14%  Similarity=0.228  Sum_probs=47.4

Q ss_pred             eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659           24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD  103 (300)
Q Consensus        24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~  103 (300)
                      .+++.+++||||       |.-      +++ .+...    +..++|+++||+.+........+..+..+..+ |   ..
T Consensus        72 ~~~~~~~liDtp-------Gh~------~f~-~~~~~----~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~-g---i~  129 (394)
T TIGR00485        72 TENRHYAHVDCP-------GHA------DYV-KNMIT----GAAQMDGAILVVSATDGPMPQTREHILLARQV-G---VP  129 (394)
T ss_pred             CCCEEEEEEECC-------chH------HHH-HHHHH----HHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-C---CC
Confidence            467899999999       642      233 23332    33588999999999755666666555554432 3   46


Q ss_pred             ceEEEEEcCCCCC
Q 036659          104 YMIVVFTGGDELE  116 (300)
Q Consensus       104 y~IVlFT~gD~Le  116 (300)
                      +.||++|--|...
T Consensus       130 ~iIvvvNK~Dl~~  142 (394)
T TIGR00485       130 YIVVFLNKCDMVD  142 (394)
T ss_pred             EEEEEEEecccCC
Confidence            7778899888653

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04169 RF3 RF3 subfamily

Probab=93.54  E-value=0.69  Score=43.20  Aligned_cols=51  Identities=12%  Similarity=0.238  Sum_probs=34.7

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHH
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL   90 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al   90 (300)
                      ..++|..+++||||       |..|+.       .+...++    .+.+++++|+..........+..+
T Consensus        66 ~~~~~~~i~liDTP-------G~~df~-------~~~~~~l----~~aD~~IlVvda~~g~~~~~~~i~  116 (267)
T cd04169          66 FEYRDCVINLLDTP-------GHEDFS-------EDTYRTL----TAVDSAVMVIDAAKGVEPQTRKLF  116 (267)
T ss_pred             EeeCCEEEEEEECC-------CchHHH-------HHHHHHH----HHCCEEEEEEECCCCccHHHHHHH
Confidence            46789999999999       865532       2334444    367999999998755654444433

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=93.33  E-value=4.2  Score=40.78  Aligned_cols=79  Identities=15%  Similarity=0.193  Sum_probs=49.8

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCC---CCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDF---SAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFG   98 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~---~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG   98 (300)
                      ..++|..+.++|||       |+-..   ..+.++.. .+..  ..+-.+.|++|+|+.+..++|..+...+..+..   
T Consensus       254 ~~~~~~~~~l~DTa-------G~~~~~~~~~~~e~~~-~~~~--~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~---  320 (472)
T PRK03003        254 IELGGKTWRFVDTA-------GLRRRVKQASGHEYYA-SLRT--HAAIEAAEVAVVLIDASEPISEQDQRVLSMVIE---  320 (472)
T ss_pred             EEECCEEEEEEECC-------CccccccccchHHHHH-HHHH--HHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH---
Confidence            46789999999999       65321   11122211 1110  112358999999999988899988876655543   


Q ss_pred             hhhhcceEEEEEcCCCC
Q 036659           99 KNVFDYMIVVFTGGDEL  115 (300)
Q Consensus        99 ~~i~~y~IVlFT~gD~L  115 (300)
                      .  -.-+|||++--|-.
T Consensus       321 ~--~~piIiV~NK~Dl~  335 (472)
T PRK03003        321 A--GRALVLAFNKWDLV  335 (472)
T ss_pred             c--CCCEEEEEECcccC
Confidence            1  24567777777744

>PLN03127 Elongation factor Tu; Provisional

Probab=93.22  E-value=0.5  Score=47.53  Aligned_cols=71  Identities=14%  Similarity=0.156  Sum_probs=48.4

Q ss_pred             eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659           24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD  103 (300)
Q Consensus        24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~  103 (300)
                      .+++.+++||||       |.-+      ++ +.+...    ..+++++|||+.....++.+++..+..+.. +|   ..
T Consensus       121 ~~~~~i~~iDtP-------Gh~~------f~-~~~~~g----~~~aD~allVVda~~g~~~qt~e~l~~~~~-~g---ip  178 (447)
T PLN03127        121 TAKRHYAHVDCP-------GHAD------YV-KNMITG----AAQMDGGILVVSAPDGPMPQTKEHILLARQ-VG---VP  178 (447)
T ss_pred             CCCeEEEEEECC-------Cccc------hH-HHHHHH----HhhCCEEEEEEECCCCCchhHHHHHHHHHH-cC---CC
Confidence            467899999999       7632      33 222222    236899999999876677777777666543 34   45


Q ss_pred             ceEEEEEcCCCCC
Q 036659          104 YMIVVFTGGDELE  116 (300)
Q Consensus       104 y~IVlFT~gD~Le  116 (300)
                      +.||+.|--|..+
T Consensus       179 ~iIvviNKiDlv~  191 (447)
T PLN03127        179 SLVVFLNKVDVVD  191 (447)
T ss_pred             eEEEEEEeeccCC
Confidence            6788888878654

>cd04168 TetM_like Tet(M)-like subfamily

Probab=93.17  E-value=1.5  Score=40.07  Aligned_cols=71  Identities=14%  Similarity=0.159  Sum_probs=45.5

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ..+++..+++||||       |..++.       .++.+++    .+.+++++|+......+...+.....++. .|   
T Consensus        59 ~~~~~~~i~liDTP-------G~~~f~-------~~~~~~l----~~aD~~IlVvd~~~g~~~~~~~~~~~~~~-~~---  116 (237)
T cd04168          59 FQWEDTKVNLIDTP-------GHMDFI-------AEVERSL----SVLDGAILVISAVEGVQAQTRILWRLLRK-LN---  116 (237)
T ss_pred             EEECCEEEEEEeCC-------CccchH-------HHHHHHH----HHhCeEEEEEeCCCCCCHHHHHHHHHHHH-cC---
Confidence            35789999999999       876532       3344444    36689999999876676655555554443 23   


Q ss_pred             hcceEEEEEcCCCC
Q 036659          102 FDYMIVVFTGGDEL  115 (300)
Q Consensus       102 ~~y~IVlFT~gD~L  115 (300)
                       .-.||+.+--|..
T Consensus       117 -~P~iivvNK~D~~  129 (237)
T cd04168         117 -IPTIIFVNKIDRA  129 (237)
T ss_pred             -CCEEEEEECcccc
Confidence             2345666655643

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=93.05  E-value=0.58  Score=48.13  Aligned_cols=112  Identities=19%  Similarity=0.375  Sum_probs=61.8

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ..++|..+++||||       |..|+.       .+..+++    .+.+++|+|+.+........+..+... ...|   
T Consensus        74 ~~~~~~~inliDTP-------G~~df~-------~~~~~~l----~~aD~aIlVvDa~~gv~~~t~~l~~~~-~~~~---  131 (526)
T PRK00741         74 FPYRDCLINLLDTP-------GHEDFS-------EDTYRTL----TAVDSALMVIDAAKGVEPQTRKLMEVC-RLRD---  131 (526)
T ss_pred             EEECCEEEEEEECC-------CchhhH-------HHHHHHH----HHCCEEEEEEecCCCCCHHHHHHHHHH-HhcC---
Confidence            45789999999999       875543       2344444    367899999988655544433333222 2222   


Q ss_pred             hcceEEEEEcCCCCCCCc-----ccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccc--hhhhhhcCCeEEE
Q 036659          102 FDYMIVVFTGGDELEDND-----ETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGR--RGILQLCDNRCVL  174 (300)
Q Consensus       102 ~~y~IVlFT~gD~Le~~~-----~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Ll~~C~~R~~~  174 (300)
                        --+++|-++-++.+.+     ..|++.++. ..-+++                   +|+|.|.  +|++.....+.+.
T Consensus       132 --iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~-~~~p~~-------------------~Pig~~~~f~Gvvdl~~~~~~~  189 (526)
T PRK00741        132 --TPIFTFINKLDRDGREPLELLDEIEEVLGI-ACAPIT-------------------WPIGMGKRFKGVYDLYNDEVEL  189 (526)
T ss_pred             --CCEEEEEECCcccccCHHHHHHHHHHHhCC-CCeeEE-------------------eccccCCceeEEEEeecceeee
Confidence              2255555554454421     123333322 111222                   2455443  6777878888888


Q ss_pred             EeC
Q 036659          175 FDN  177 (300)
Q Consensus       175 FnN  177 (300)
                      |+.
T Consensus       190 ~~~  192 (526)
T PRK00741        190 YQP  192 (526)
T ss_pred             ccc
Confidence            853

>cd00881 GTP_translation_factor GTP translation factor family

Probab=93.05  E-value=0.48  Score=39.04  Aligned_cols=71  Identities=15%  Similarity=0.093  Sum_probs=47.9

Q ss_pred             eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh
Q 036659           23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF  102 (300)
Q Consensus        23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~  102 (300)
                      .+.+..+++||||       |.-+.       ......++    ++.|++++|+.....++......+..+..     .-
T Consensus        58 ~~~~~~~~liDtp-------G~~~~-------~~~~~~~~----~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-----~~  114 (189)
T cd00881          58 EWPDRRVNFIDTP-------GHEDF-------SSEVIRGL----SVSDGAILVVDANEGVQPQTREHLRIARE-----GG  114 (189)
T ss_pred             eeCCEEEEEEeCC-------CcHHH-------HHHHHHHH----HhcCEEEEEEECCCCCcHHHHHHHHHHHH-----CC
Confidence            4457889999999       75332       12222333    47899999999886677666665555443     34


Q ss_pred             cceEEEEEcCCCCC
Q 036659          103 DYMIVVFTGGDELE  116 (300)
Q Consensus       103 ~y~IVlFT~gD~Le  116 (300)
                      ..++||++--|...
T Consensus       115 ~~i~iv~nK~D~~~  128 (189)
T cd00881         115 LPIIVAINKIDRVG  128 (189)
T ss_pred             CCeEEEEECCCCcc
Confidence            67889999888764

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>smart00175 RAB Rab subfamily of small GTPases

Probab=92.76  E-value=4.3  Score=32.69  Aligned_cols=73  Identities=19%  Similarity=0.204  Sum_probs=38.8

Q ss_pred             eeeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhch
Q 036659           22 IRIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGK   99 (300)
Q Consensus        22 ~~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~   99 (300)
                      ..++|  ..+.++|||       |.       +........++    .+.+++++|+.+...-|-++   +..|...+-.
T Consensus        42 ~~~~~~~~~~~l~D~~-------G~-------~~~~~~~~~~~----~~~d~~ilv~d~~~~~s~~~---~~~~l~~~~~  100 (164)
T smart00175       42 IEVDGKRVKLQIWDTA-------GQ-------ERFRSITSSYY----RGAVGALLVYDITNRESFEN---LKNWLKELRE  100 (164)
T ss_pred             EEECCEEEEEEEEECC-------Ch-------HHHHHHHHHHh----CCCCEEEEEEECCCHHHHHH---HHHHHHHHHH
Confidence            44566  467899999       63       11222223332    47799999999873333322   2222222211


Q ss_pred             hh--hcceEEEEEcCCCC
Q 036659          100 NV--FDYMIVVFTGGDEL  115 (300)
Q Consensus       100 ~i--~~y~IVlFT~gD~L  115 (300)
                      ..  ---++|+.|.-|..
T Consensus       101 ~~~~~~pivvv~nK~D~~  118 (164)
T smart00175      101 YADPNVVIMLVGNKSDLE  118 (164)
T ss_pred             hCCCCCeEEEEEEchhcc
Confidence            11  23567777776643

Rab GTPases are implicated in vesicle trafficking.

>PRK09866 hypothetical protein; Provisional

Probab=92.54  E-value=14  Score=40.12  Aligned_cols=85  Identities=15%  Similarity=0.142  Sum_probs=54.7

Q ss_pred             EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceE
Q 036659           27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMI  106 (300)
Q Consensus        27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~I  106 (300)
                      ..+++||||       |+.....  ..+.+-+.+.+    .+.++||+|+.....++..|...++.++.. |+.  .-.|
T Consensus       230 ~QIIFVDTP-------GIhk~~~--~~L~k~M~eqL----~eADvVLFVVDat~~~s~~DeeIlk~Lkk~-~K~--~PVI  293 (741)
T PRK09866        230 GQLTLLDTP-------GPNEAGQ--PHLQKMLNQQL----ARASAVLAVLDYTQLKSISDEEVREAILAV-GQS--VPLY  293 (741)
T ss_pred             CCEEEEECC-------CCCCccc--hHHHHHHHHHH----hhCCEEEEEEeCCCCCChhHHHHHHHHHhc-CCC--CCEE
Confidence            467899999       8875432  22444455543    356899999999856899999888887653 321  1466


Q ss_pred             EEEEcCCCCCCCc---ccHHHhhh
Q 036659          107 VVFTGGDELEDND---ETLEDYLG  127 (300)
Q Consensus       107 VlFT~gD~Le~~~---~tledyl~  127 (300)
                      +|..--|.....+   +.+..|+.
T Consensus       294 LVVNKIDl~dreeddkE~Lle~V~  317 (741)
T PRK09866        294 VLVNKFDQQDRNSDDADQVRALIS  317 (741)
T ss_pred             EEEEcccCCCcccchHHHHHHHHH
Confidence            7777667553221   34556654

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=92.50  E-value=1.3  Score=41.43  Aligned_cols=55  Identities=16%  Similarity=0.165  Sum_probs=38.8

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHH
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQ   94 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq   94 (300)
                      ..|++..+++||||       |.+|+       ..++.+++.    ..+++|+|+.........+...+..+.
T Consensus        59 ~~~~~~~i~liDTP-------G~~df-------~~~~~~~l~----~aD~ailVVDa~~g~~~~t~~~~~~~~  113 (270)
T cd01886          59 CFWKDHRINIIDTP-------GHVDF-------TIEVERSLR----VLDGAVAVFDAVAGVEPQTETVWRQAD  113 (270)
T ss_pred             EEECCEEEEEEECC-------CcHHH-------HHHHHHHHH----HcCEEEEEEECCCCCCHHHHHHHHHHH
Confidence            46789999999999       87653       235555554    446889999887667766666665543

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK12735 elongation factor Tu; Reviewed

Probab=92.50  E-value=0.49  Score=46.34  Aligned_cols=71  Identities=11%  Similarity=0.124  Sum_probs=46.1

Q ss_pred             eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659           24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD  103 (300)
Q Consensus        24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~  103 (300)
                      .+++.+++||||       |.-      +++     +.+..+..+++++|||+.+....+...+..+..+. ..|   ..
T Consensus        72 ~~~~~i~~iDtP-------Gh~------~f~-----~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~-~~g---i~  129 (396)
T PRK12735         72 TANRHYAHVDCP-------GHA------DYV-----KNMITGAAQMDGAILVVSAADGPMPQTREHILLAR-QVG---VP  129 (396)
T ss_pred             CCCcEEEEEECC-------CHH------HHH-----HHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHH-HcC---CC
Confidence            467899999999       641      222     33333445899999999987556666555554433 334   45


Q ss_pred             ceEEEEEcCCCCC
Q 036659          104 YMIVVFTGGDELE  116 (300)
Q Consensus       104 y~IVlFT~gD~Le  116 (300)
                      +.||++|--|-..
T Consensus       130 ~iivvvNK~Dl~~  142 (396)
T PRK12735        130 YIVVFLNKCDMVD  142 (396)
T ss_pred             eEEEEEEecCCcc
Confidence            6667788777553

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.31  E-value=8.5  Score=38.62  Aligned_cols=62  Identities=15%  Similarity=0.164  Sum_probs=32.1

Q ss_pred             EEEEEeCCCCcccCcccCCCCCChH----HHHHHHHHhh---------ccCCCCCeEEEEEEeCCCC-CCHHHHHHHHHH
Q 036659           28 LEKVIDTRWVRHAIARLFDFSAGSK----FVGKEIVTCI---------GMAKDGIHAVLVVFSVRSR-FSQEEEAALHSW   93 (300)
Q Consensus        28 ~v~VIDTP~w~~~~~glfd~~~~~e----~v~kEI~~ci---------~l~~pGpHA~LLV~~v~~r-fT~EE~~al~~l   93 (300)
                      .++||||||+=    ...|-+.+-+    .+......-+         .....-+|+.|..++-.+. +.+=|-.++..+
T Consensus        80 ~LtvidtPGfG----D~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l  155 (366)
T KOG2655|consen   80 NLTVIDTPGFG----DAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKL  155 (366)
T ss_pred             eeEEeccCCCc----ccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHH
Confidence            68999999431    2334333322    2222222222         2233378888888875433 555555555444

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=92.26  E-value=4.3  Score=42.03  Aligned_cols=47  Identities=15%  Similarity=0.126  Sum_probs=29.3

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCC
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVR   79 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~   79 (300)
                      ..+++..++++|||       ||.+.......+..+..+-+    ...+++|+|+.+.
T Consensus       201 v~~~~~~f~laDtP-------Gliegas~g~gLg~~fLrhi----eradvLv~VVD~s  247 (500)
T PRK12296        201 VQAGDTRFTVADVP-------GLIPGASEGKGLGLDFLRHI----ERCAVLVHVVDCA  247 (500)
T ss_pred             EEECCeEEEEEECC-------CCccccchhhHHHHHHHHHH----HhcCEEEEEECCc
Confidence            34577899999999       88653222223333333322    2457999999875

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=92.11  E-value=2  Score=44.61  Aligned_cols=72  Identities=24%  Similarity=0.261  Sum_probs=46.9

Q ss_pred             eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh
Q 036659           23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF  102 (300)
Q Consensus        23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~  102 (300)
                      ..++..+++||||       |-      ..++ +    .+.....|.+++|+|+.+......+....+..+ ..+|   .
T Consensus        46 ~~~~~~v~~iDtP-------Gh------e~f~-~----~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il-~~lg---i  103 (581)
T TIGR00475        46 PLPDYRLGFIDVP-------GH------EKFI-S----NAIAGGGGIDAALLVVDADEGVMTQTGEHLAVL-DLLG---I  103 (581)
T ss_pred             EeCCEEEEEEECC-------CH------HHHH-H----HHHhhhccCCEEEEEEECCCCCcHHHHHHHHHH-HHcC---C
Confidence            4567899999999       62      1222 2    222334689999999999754545544445433 3344   3


Q ss_pred             cceEEEEEcCCCCC
Q 036659          103 DYMIVVFTGGDELE  116 (300)
Q Consensus       103 ~y~IVlFT~gD~Le  116 (300)
                      .+.||++|--|...
T Consensus       104 ~~iIVVlNK~Dlv~  117 (581)
T TIGR00475       104 PHTIVVITKADRVN  117 (581)
T ss_pred             CeEEEEEECCCCCC
Confidence            57999999888553

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=92.03  E-value=0.64  Score=46.73  Aligned_cols=85  Identities=16%  Similarity=0.182  Sum_probs=51.0

Q ss_pred             CCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHH-HHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHH
Q 036659           12 APKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKE-IVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL   90 (300)
Q Consensus        12 vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kE-I~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al   90 (300)
                      .|..+... ...++|..+.++|||       |+-++.   +.+.+. |.++.. .....|++|+|+.+..+.|.++. . 
T Consensus       237 tTrd~~~~-~i~~~g~~v~l~DTa-------G~~~~~---~~ie~~gi~~~~~-~~~~aD~il~V~D~s~~~s~~~~-~-  302 (442)
T TIGR00450       237 TTRDVVEG-DFELNGILIKLLDTA-------GIREHA---DFVERLGIEKSFK-AIKQADLVIYVLDASQPLTKDDF-L-  302 (442)
T ss_pred             cEEEEEEE-EEEECCEEEEEeeCC-------Ccccch---hHHHHHHHHHHHH-HHhhCCEEEEEEECCCCCChhHH-H-
Confidence            34434333 356889999999999       875543   222221 333332 34589999999999878887664 2 


Q ss_pred             HHHHHHhchhhhcceEEEEEcCCC
Q 036659           91 HSWQTLFGKNVFDYMIVVFTGGDE  114 (300)
Q Consensus        91 ~~lq~lFG~~i~~y~IVlFT~gD~  114 (300)
                        +..+-..  -..+|||.+--|.
T Consensus       303 --l~~~~~~--~~piIlV~NK~Dl  322 (442)
T TIGR00450       303 --IIDLNKS--KKPFILVLNKIDL  322 (442)
T ss_pred             --HHHHhhC--CCCEEEEEECccC
Confidence              2222111  1346777776664

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK00049 elongation factor Tu; Reviewed

Probab=91.97  E-value=0.55  Score=46.08  Aligned_cols=71  Identities=13%  Similarity=0.170  Sum_probs=48.5

Q ss_pred             eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659           24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD  103 (300)
Q Consensus        24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~  103 (300)
                      ++++.+++||||       |.-      +++ +++    ..+..+.+++|||+.....++..++..+..+.. +|   ..
T Consensus        72 ~~~~~i~~iDtP-------G~~------~f~-~~~----~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~-~g---~p  129 (396)
T PRK00049         72 TEKRHYAHVDCP-------GHA------DYV-KNM----ITGAAQMDGAILVVSAADGPMPQTREHILLARQ-VG---VP  129 (396)
T ss_pred             CCCeEEEEEECC-------CHH------HHH-HHH----HhhhccCCEEEEEEECCCCCchHHHHHHHHHHH-cC---CC
Confidence            468899999999       642      222 233    333468899999999876677777776665543 44   45


Q ss_pred             ceEEEEEcCCCCC
Q 036659          104 YMIVVFTGGDELE  116 (300)
Q Consensus       104 y~IVlFT~gD~Le  116 (300)
                      ++||++|--|...
T Consensus       130 ~iiVvvNK~D~~~  142 (396)
T PRK00049        130 YIVVFLNKCDMVD  142 (396)
T ss_pred             EEEEEEeecCCcc
Confidence            6677888888653

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=91.97  E-value=3.1  Score=41.94  Aligned_cols=80  Identities=16%  Similarity=0.140  Sum_probs=43.6

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCC---CCCHHHHHHHHHHHHHhchh-h
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRS---RFSQEEEAALHSWQTLFGKN-V  101 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~---rfT~EE~~al~~lq~lFG~~-i  101 (300)
                      +..++++|||       |+-........+.....+.+    ...+++|+|+.+..   +-+-++-..+......+.+. .
T Consensus       205 ~~~~~laD~P-------Gliega~~~~gLg~~fLrhi----er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~  273 (424)
T PRK12297        205 GRSFVMADIP-------GLIEGASEGVGLGHQFLRHI----ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLL  273 (424)
T ss_pred             CceEEEEECC-------CCcccccccchHHHHHHHHH----hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhcc
Confidence            7899999999       87542111122333333333    24589999999852   12323333332222334443 2


Q ss_pred             hcceEEEEEcCCCCCC
Q 036659          102 FDYMIVVFTGGDELED  117 (300)
Q Consensus       102 ~~y~IVlFT~gD~Le~  117 (300)
                      -+-.|||+|--| |.+
T Consensus       274 ~kP~IVV~NK~D-L~~  288 (424)
T PRK12297        274 ERPQIVVANKMD-LPE  288 (424)
T ss_pred             CCcEEEEEeCCC-CcC
Confidence            356777888777 543

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=91.86  E-value=2.4  Score=44.29  Aligned_cols=89  Identities=16%  Similarity=0.069  Sum_probs=50.5

Q ss_pred             CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHH
Q 036659           11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL   90 (300)
Q Consensus        11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al   90 (300)
                      ++|...... ...++|..++++|||       |..+....+.+  +++. ...+...+++++++|+... .+...    +
T Consensus        26 G~Tv~~~~~-~i~~~~~~i~lvDtP-------G~~~~~~~s~~--e~v~-~~~l~~~~aDvvI~VvDat-~ler~----l   89 (591)
T TIGR00437        26 GVTVEKKEG-KLGFQGEDIEIVDLP-------GIYSLTTFSLE--EEVA-RDYLLNEKPDLVVNVVDAS-NLERN----L   89 (591)
T ss_pred             CeEEEEEEE-EEEECCeEEEEEECC-------CccccCccchH--HHHH-HHHHhhcCCCEEEEEecCC-cchhh----H
Confidence            455444433 245788999999999       87765432211  1222 2222346889999999986 44322    2


Q ss_pred             HHHHHHhchhhhcceEEEEEcCCCCCC
Q 036659           91 HSWQTLFGKNVFDYMIVVFTGGDELED  117 (300)
Q Consensus        91 ~~lq~lFG~~i~~y~IVlFT~gD~Le~  117 (300)
                      .....+-..  -.-+||+.+--|..+.
T Consensus        90 ~l~~ql~~~--~~PiIIVlNK~Dl~~~  114 (591)
T TIGR00437        90 YLTLQLLEL--GIPMILALNLVDEAEK  114 (591)
T ss_pred             HHHHHHHhc--CCCEEEEEehhHHHHh
Confidence            222222111  2467888887775543

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=91.66  E-value=0.61  Score=45.91  Aligned_cols=83  Identities=11%  Similarity=0.084  Sum_probs=50.7

Q ss_pred             CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHH
Q 036659           11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL   90 (300)
Q Consensus        11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al   90 (300)
                      ++|-.+... ...++++.+++||||       |.-+       ..+++..    +..+.+++|||+.+..-+..+.+..+
T Consensus        65 giTid~~~~-~~~~~~~~~~liDtP-------Gh~~-------f~~~~~~----~~~~aD~allVVda~~G~~~qt~~~~  125 (406)
T TIGR02034        65 GITIDVAYR-YFSTDKRKFIVADTP-------GHEQ-------YTRNMAT----GASTADLAVLLVDARKGVLEQTRRHS  125 (406)
T ss_pred             CcCeEeeeE-EEccCCeEEEEEeCC-------CHHH-------HHHHHHH----HHhhCCEEEEEEECCCCCccccHHHH
Confidence            344444332 234678999999999       7322       2233333    33488999999998755655544433


Q ss_pred             HHHHHHhchhhhcceEEEEEcCCCCC
Q 036659           91 HSWQTLFGKNVFDYMIVVFTGGDELE  116 (300)
Q Consensus        91 ~~lq~lFG~~i~~y~IVlFT~gD~Le  116 (300)
                      ..+ ..+|   ..+.||++|--|...
T Consensus       126 ~~~-~~~~---~~~iivviNK~D~~~  147 (406)
T TIGR02034       126 YIA-SLLG---IRHVVLAVNKMDLVD  147 (406)
T ss_pred             HHH-HHcC---CCcEEEEEEeccccc
Confidence            332 3445   357888888777653

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=91.65  E-value=1.4  Score=43.43  Aligned_cols=69  Identities=10%  Similarity=0.162  Sum_probs=44.1

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCC-CHHHHHHHHHHHHHhchhhhcc
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSWQTLFGKNVFDY  104 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rf-T~EE~~al~~lq~lFG~~i~~y  104 (300)
                      ++.+++||||       |-       +...+.+....    .++|++|||+.+...+ ..+....+..+ ..+|   .++
T Consensus        79 ~~~i~liDtP-------Gh-------~~f~~~~~~g~----~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~g---i~~  136 (406)
T TIGR03680        79 LRRVSFVDAP-------GH-------ETLMATMLSGA----ALMDGALLVIAANEPCPQPQTKEHLMAL-EIIG---IKN  136 (406)
T ss_pred             ccEEEEEECC-------CH-------HHHHHHHHHHH----HHCCEEEEEEECCCCccccchHHHHHHH-HHcC---CCe
Confidence            6899999999       63       22334444433    3789999999997444 44444444433 4444   246


Q ss_pred             eEEEEEcCCCCC
Q 036659          105 MIVVFTGGDELE  116 (300)
Q Consensus       105 ~IVlFT~gD~Le  116 (300)
                      .||++|--|...
T Consensus       137 iIVvvNK~Dl~~  148 (406)
T TIGR03680       137 IVIVQNKIDLVS  148 (406)
T ss_pred             EEEEEEccccCC
Confidence            788888878553

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd04121 Rab40 Rab40 subfamily

Probab=91.64  E-value=7.7  Score=34.10  Aligned_cols=75  Identities=15%  Similarity=0.149  Sum_probs=39.6

Q ss_pred             eeeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhch
Q 036659           22 IRIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGK   99 (300)
Q Consensus        22 ~~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~   99 (300)
                      ..++|  ..+.+.|||       |.-..       . .+..   ....|.|+||||+.+..+-|-++-.  .++..+ -.
T Consensus        48 i~~~~~~~~l~iwDt~-------G~~~~-------~-~l~~---~~~~~ad~illVfD~t~~~Sf~~~~--~w~~~i-~~  106 (189)
T cd04121          48 ILLDGRRVKLQLWDTS-------GQGRF-------C-TIFR---SYSRGAQGIILVYDITNRWSFDGID--RWIKEI-DE  106 (189)
T ss_pred             EEECCEEEEEEEEeCC-------CcHHH-------H-HHHH---HHhcCCCEEEEEEECcCHHHHHHHH--HHHHHH-HH
Confidence            44566  466789999       64211       1 1111   1235999999999998655555432  233333 22


Q ss_pred             hhhcceEEEEEcCCCCCC
Q 036659          100 NVFDYMIVVFTGGDELED  117 (300)
Q Consensus       100 ~i~~y~IVlFT~gD~Le~  117 (300)
                      ..-+-.|||.-.+-+|.+
T Consensus       107 ~~~~~piilVGNK~DL~~  124 (189)
T cd04121         107 HAPGVPKILVGNRLHLAF  124 (189)
T ss_pred             hCCCCCEEEEEECccchh
Confidence            222334455544544643

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04127 Rab27A Rab27a subfamily

Probab=91.53  E-value=5.1  Score=33.26  Aligned_cols=68  Identities=10%  Similarity=0.091  Sum_probs=35.9

Q ss_pred             EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh---hc
Q 036659           27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV---FD  103 (300)
Q Consensus        27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i---~~  103 (300)
                      ..+.++|||       |-       +.    ........-.+.|++++|+.+..+-|   -..+..|...+-...   --
T Consensus        63 ~~~~i~Dt~-------G~-------~~----~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~~~~~~~i~~~~~~~~~  121 (180)
T cd04127          63 IHLQLWDTA-------GQ-------ER----FRSLTTAFFRDAMGFLLIFDLTNEQS---FLNVRNWMSQLQTHAYCENP  121 (180)
T ss_pred             EEEEEEeCC-------Ch-------HH----HHHHHHHHhCCCCEEEEEEECCCHHH---HHHHHHHHHHHHHhcCCCCC
Confidence            578899999       61       11    11222223358899999999873322   222333322221111   12


Q ss_pred             ceEEEEEcCCCC
Q 036659          104 YMIVVFTGGDEL  115 (300)
Q Consensus       104 y~IVlFT~gD~L  115 (300)
                      .+|||.|--|-.
T Consensus       122 piiiv~nK~Dl~  133 (180)
T cd04127         122 DIVLCGNKADLE  133 (180)
T ss_pred             cEEEEEeCccch
Confidence            467777766643

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04142 RRP22 RRP22 subfamily

Probab=91.39  E-value=3.5  Score=36.29  Aligned_cols=51  Identities=12%  Similarity=0.151  Sum_probs=29.5

Q ss_pred             ceeeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCC
Q 036659           21 TIRIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSR   81 (300)
Q Consensus        21 t~~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r   81 (300)
                      ...++|+  .+.++|||       |+-+....   ...|...-...+-.+.+++|+|+.+.++
T Consensus        41 ~i~~~~~~~~l~i~Dt~-------G~~~~~~~---~~~e~~~~~~~~~~~ad~iilv~D~~~~   93 (198)
T cd04142          41 AVVLSGRVYDLHILDVP-------NMQRYPGT---AGQEWMDPRFRGLRNSRAFILVYDICSP   93 (198)
T ss_pred             EEEECCEEEEEEEEeCC-------CcccCCcc---chhHHHHHHHhhhccCCEEEEEEECCCH
Confidence            3457885  56799999       65332211   1222111111233689999999999744

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>CHL00071 tufA elongation factor Tu

Probab=91.25  E-value=0.69  Score=45.52  Aligned_cols=71  Identities=11%  Similarity=0.120  Sum_probs=49.0

Q ss_pred             eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659           24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD  103 (300)
Q Consensus        24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~  103 (300)
                      ++++.+++||||       |.-      + ..+++.+.+    .+.++++||+....-++..++..+..+. .+|   ..
T Consensus        72 ~~~~~~~~iDtP-------Gh~------~-~~~~~~~~~----~~~D~~ilVvda~~g~~~qt~~~~~~~~-~~g---~~  129 (409)
T CHL00071         72 TENRHYAHVDCP-------GHA------D-YVKNMITGA----AQMDGAILVVSAADGPMPQTKEHILLAK-QVG---VP  129 (409)
T ss_pred             cCCeEEEEEECC-------ChH------H-HHHHHHHHH----HhCCEEEEEEECCCCCcHHHHHHHHHHH-HcC---CC
Confidence            468899999999       621      2 234444444    3778999999987667777777776554 334   35


Q ss_pred             ceEEEEEcCCCCC
Q 036659          104 YMIVVFTGGDELE  116 (300)
Q Consensus       104 y~IVlFT~gD~Le  116 (300)
                      +.||++|--|...
T Consensus       130 ~iIvvvNK~D~~~  142 (409)
T CHL00071        130 NIVVFLNKEDQVD  142 (409)
T ss_pred             EEEEEEEccCCCC
Confidence            6788899888664

>cd04144 Ras2 Ras2 subfamily

Probab=91.22  E-value=4.1  Score=34.90  Aligned_cols=74  Identities=16%  Similarity=0.117  Sum_probs=38.3

Q ss_pred             eeCCEE--EEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhch
Q 036659           23 RIQVVL--EKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGK   99 (300)
Q Consensus        23 ~~~Gr~--v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~   99 (300)
                      .++|..  +.++|||       |.-...        .+.   .....+.|++|+|+.+.++-|-+. ...+..+......
T Consensus        41 ~~~~~~~~l~i~Dt~-------G~~~~~--------~~~---~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~  102 (190)
T cd04144          41 VVDGQPCMLEVLDTA-------GQEEYT--------ALR---DQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDE  102 (190)
T ss_pred             EECCEEEEEEEEECC-------CchhhH--------HHH---HHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcc
Confidence            456765  7789999       732111        111   112447899999999974433332 2233334333321


Q ss_pred             hhh-cceEEEEEcCCC
Q 036659          100 NVF-DYMIVVFTGGDE  114 (300)
Q Consensus       100 ~i~-~y~IVlFT~gD~  114 (300)
                      ... .-.|||.+--|-
T Consensus       103 ~~~~~piilvgNK~Dl  118 (190)
T cd04144         103 SAADVPIMIVGNKCDK  118 (190)
T ss_pred             cCCCCCEEEEEEChhc
Confidence            111 235556665553

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd01861 Rab6 Rab6 subfamily

Probab=91.21  E-value=5.7  Score=32.07  Aligned_cols=73  Identities=15%  Similarity=0.109  Sum_probs=38.7

Q ss_pred             eCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhchh
Q 036659           24 IQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGKN  100 (300)
Q Consensus        24 ~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~~  100 (300)
                      ++|  ..+.++|||       |.       +.....+...    ..+.|++++|+.+..+-|-++ ...+..+....+. 
T Consensus        44 ~~~~~~~l~~~D~~-------G~-------~~~~~~~~~~----~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~-  104 (161)
T cd01861          44 LEDKTVRLQLWDTA-------GQ-------ERFRSLIPSY----IRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGN-  104 (161)
T ss_pred             ECCEEEEEEEEECC-------Cc-------HHHHHHHHHH----hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC-
Confidence            455  358899999       62       1111222222    247899999999974322222 2233333333332 


Q ss_pred             hhcceEEEEEcCCCCC
Q 036659          101 VFDYMIVVFTGGDELE  116 (300)
Q Consensus       101 i~~y~IVlFT~gD~Le  116 (300)
                       -.-++++.+.-|...
T Consensus       105 -~~~iilv~nK~D~~~  119 (161)
T cd01861         105 -DVIIVLVGNKTDLSD  119 (161)
T ss_pred             -CCEEEEEEEChhccc
Confidence             134667777667543

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>TIGR00503 prfC peptide chain release factor 3

Probab=90.68  E-value=1.3  Score=45.63  Aligned_cols=52  Identities=15%  Similarity=0.249  Sum_probs=34.7

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHH
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALH   91 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~   91 (300)
                      ..++|..+++||||       |..|+.       .++.+++    .+.+++|+|+.....+....+..++
T Consensus        75 ~~~~~~~inliDTP-------G~~df~-------~~~~~~l----~~aD~aIlVvDa~~gv~~~t~~l~~  126 (527)
T TIGR00503        75 FPYRDCLVNLLDTP-------GHEDFS-------EDTYRTL----TAVDNCLMVIDAAKGVETRTRKLME  126 (527)
T ss_pred             EeeCCeEEEEEECC-------ChhhHH-------HHHHHHH----HhCCEEEEEEECCCCCCHHHHHHHH
Confidence            35789999999999       864432       3444444    3678899999887555554444443

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>cd01890 LepA LepA subfamily

Probab=90.44  E-value=1.1  Score=37.01  Aligned_cols=66  Identities=20%  Similarity=0.157  Sum_probs=41.0

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcce
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYM  105 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~  105 (300)
                      +..++++|||       |..++       ...+.+.+    .+.+++|+|+.+....+.++...+..+.   ..+  ..+
T Consensus        66 ~~~~~l~Dt~-------G~~~~-------~~~~~~~~----~~ad~~i~v~D~~~~~~~~~~~~~~~~~---~~~--~~i  122 (179)
T cd01890          66 EYLLNLIDTP-------GHVDF-------SYEVSRSL----AACEGALLLVDATQGVEAQTLANFYLAL---ENN--LEI  122 (179)
T ss_pred             cEEEEEEECC-------CChhh-------HHHHHHHH----HhcCeEEEEEECCCCccHhhHHHHHHHH---HcC--CCE
Confidence            5568899999       87543       12233333    3788999999987566655544443322   122  247


Q ss_pred             EEEEEcCCC
Q 036659          106 IVVFTGGDE  114 (300)
Q Consensus       106 IVlFT~gD~  114 (300)
                      |||++--|.
T Consensus       123 iiv~NK~Dl  131 (179)
T cd01890         123 IPVINKIDL  131 (179)
T ss_pred             EEEEECCCC
Confidence            888887774

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=90.39  E-value=13  Score=39.56  Aligned_cols=81  Identities=16%  Similarity=0.138  Sum_probs=50.3

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhh-c-cCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhch
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCI-G-MAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGK   99 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci-~-l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~   99 (300)
                      ..++|..+.+||||       |+-......  .+.|.-..+ . -+-.+.|++|+|+.+..++|..+...+..+..    
T Consensus       493 ~~~~~~~~~liDTa-------G~~~~~~~~--~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~----  559 (712)
T PRK09518        493 VEIDGEDWLFIDTA-------GIKRRQHKL--TGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVD----  559 (712)
T ss_pred             EEECCCEEEEEECC-------CcccCcccc--hhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHH----
Confidence            45789999999999       654322111  111211111 1 12368899999999988899998776655533    


Q ss_pred             hhhcceEEEEEcCCCCC
Q 036659          100 NVFDYMIVVFTGGDELE  116 (300)
Q Consensus       100 ~i~~y~IVlFT~gD~Le  116 (300)
                       .-.-+|||++--|-..
T Consensus       560 -~~~piIiV~NK~DL~~  575 (712)
T PRK09518        560 -AGRALVLVFNKWDLMD  575 (712)
T ss_pred             -cCCCEEEEEEchhcCC
Confidence             1235677777767543

>PRK13768 GTPase; Provisional

Probab=90.29  E-value=2.1  Score=39.56  Aligned_cols=82  Identities=13%  Similarity=0.040  Sum_probs=45.9

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcce
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYM  105 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~  105 (300)
                      +..+.+||||       |..+...- ....+-+.+.+.-.  ++.++++|+......+..+......+....=...-...
T Consensus        96 ~~~~~~~d~~-------g~~~~~~~-~~~~~~~~~~l~~~--~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~  165 (253)
T PRK13768         96 DADYVLVDTP-------GQMELFAF-RESGRKLVERLSGS--SKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQ  165 (253)
T ss_pred             CCCEEEEeCC-------cHHHHHhh-hHHHHHHHHHHHhc--CCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCE
Confidence            4478999999       75432211 11222233333211  28899999998644556664444333211101123578


Q ss_pred             EEEEEcCCCCCC
Q 036659          106 IVVFTGGDELED  117 (300)
Q Consensus       106 IVlFT~gD~Le~  117 (300)
                      |+|+|-.|.+..
T Consensus       166 i~v~nK~D~~~~  177 (253)
T PRK13768        166 IPVLNKADLLSE  177 (253)
T ss_pred             EEEEEhHhhcCc
Confidence            899999998865

>cd04106 Rab23_lke Rab23-like subfamily

Probab=90.29  E-value=8  Score=31.21  Aligned_cols=49  Identities=31%  Similarity=0.372  Sum_probs=28.6

Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh-cceEEEEEcCCCCCC
Q 036659           66 KDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF-DYMIVVFTGGDELED  117 (300)
Q Consensus        66 ~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~-~y~IVlFT~gD~Le~  117 (300)
                      -.+.|++++|+.+.++   +--..+..+...+....- --.|||.|.-|....
T Consensus        72 ~~~~~~~v~v~d~~~~---~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  121 (162)
T cd04106          72 YRGAQACILVFSTTDR---ESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQ  121 (162)
T ss_pred             hcCCCEEEEEEECCCH---HHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccc
Confidence            3589999999998632   222334444444433221 246788887775543

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=90.27  E-value=3.5  Score=40.90  Aligned_cols=70  Identities=9%  Similarity=0.206  Sum_probs=43.5

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCC-CHHHHHHHHHHHHHhchhhhcc
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSWQTLFGKNVFDY  104 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rf-T~EE~~al~~lq~lFG~~i~~y  104 (300)
                      .+.++++|||       |-      .+++ .++..    ...+.+++|+|+.+...+ +.+....+..+. ..|   ...
T Consensus        84 ~~~i~liDtP-------G~------~~f~-~~~~~----~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~-~~~---i~~  141 (411)
T PRK04000         84 LRRVSFVDAP-------GH------ETLM-ATMLS----GAALMDGAILVIAANEPCPQPQTKEHLMALD-IIG---IKN  141 (411)
T ss_pred             ccEEEEEECC-------CH------HHHH-HHHHH----HHhhCCEEEEEEECCCCCCChhHHHHHHHHH-HcC---CCc
Confidence            3789999999       72      1222 23322    345789999999987544 455455554443 333   245


Q ss_pred             eEEEEEcCCCCCC
Q 036659          105 MIVVFTGGDELED  117 (300)
Q Consensus       105 ~IVlFT~gD~Le~  117 (300)
                      .|||+|--|....
T Consensus       142 iiVVlNK~Dl~~~  154 (411)
T PRK04000        142 IVIVQNKIDLVSK  154 (411)
T ss_pred             EEEEEEeeccccc
Confidence            7888888886543

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=90.20  E-value=2  Score=36.26  Aligned_cols=63  Identities=16%  Similarity=0.134  Sum_probs=35.3

Q ss_pred             EEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceEEEEE
Q 036659           31 VIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFT  110 (300)
Q Consensus        31 VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~IVlFT  110 (300)
                      +||||       |.+...  ++ ..+++..    ...+.+++|+|+.+....+...    ..+.. ++..  .-.+++.+
T Consensus        41 ~iDtp-------G~~~~~--~~-~~~~~~~----~~~~ad~il~v~d~~~~~s~~~----~~~~~-~~~~--~~ii~v~n   99 (158)
T PRK15467         41 DIDTP-------GEYFSH--PR-WYHALIT----TLQDVDMLIYVHGANDPESRLP----AGLLD-IGVS--KRQIAVIS   99 (158)
T ss_pred             cccCC-------ccccCC--HH-HHHHHHH----HHhcCCEEEEEEeCCCcccccC----HHHHh-ccCC--CCeEEEEE
Confidence            79999       876543  22 2334322    2468999999999874332211    12222 2221  23677777


Q ss_pred             cCCC
Q 036659          111 GGDE  114 (300)
Q Consensus       111 ~gD~  114 (300)
                      --|.
T Consensus       100 K~Dl  103 (158)
T PRK15467        100 KTDM  103 (158)
T ss_pred             cccc
Confidence            7774

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=90.14  E-value=1.2  Score=44.99  Aligned_cols=72  Identities=13%  Similarity=0.134  Sum_probs=45.6

Q ss_pred             eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh
Q 036659           23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF  102 (300)
Q Consensus        23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~  102 (300)
                      .++++.+++||||       |.       +...+++..+    ..+++++|||+.....++...+..+. +...+|   .
T Consensus       103 ~~~~~~i~~iDTP-------Gh-------~~f~~~~~~~----l~~aD~allVVDa~~G~~~qt~~~~~-l~~~lg---~  160 (474)
T PRK05124        103 STEKRKFIIADTP-------GH-------EQYTRNMATG----ASTCDLAILLIDARKGVLDQTRRHSF-IATLLG---I  160 (474)
T ss_pred             ccCCcEEEEEECC-------Cc-------HHHHHHHHHH----HhhCCEEEEEEECCCCccccchHHHH-HHHHhC---C
Confidence            4678899999999       72       1223344444    36889999999986555443332222 234445   3


Q ss_pred             cceEEEEEcCCCCC
Q 036659          103 DYMIVVFTGGDELE  116 (300)
Q Consensus       103 ~y~IVlFT~gD~Le  116 (300)
                      ++.||+.|--|...
T Consensus       161 ~~iIvvvNKiD~~~  174 (474)
T PRK05124        161 KHLVVAVNKMDLVD  174 (474)
T ss_pred             CceEEEEEeecccc
Confidence            57888888777653

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=89.59  E-value=1.2  Score=46.44  Aligned_cols=73  Identities=12%  Similarity=0.140  Sum_probs=45.8

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ..++++.+++||||       |.-      ++ .+.+..    +..+.+++|||+.+...++.+.+..+..+ ..+|   
T Consensus        99 ~~~~~~~~~liDtP-------G~~------~f-~~~~~~----~~~~aD~~llVvda~~g~~~~t~e~~~~~-~~~~---  156 (632)
T PRK05506         99 FATPKRKFIVADTP-------GHE------QY-TRNMVT----GASTADLAIILVDARKGVLTQTRRHSFIA-SLLG---  156 (632)
T ss_pred             EccCCceEEEEECC-------ChH------HH-HHHHHH----HHHhCCEEEEEEECCCCccccCHHHHHHH-HHhC---
Confidence            35678899999999       731      22 233333    33588999999998655554444333333 3334   


Q ss_pred             hcceEEEEEcCCCCC
Q 036659          102 FDYMIVVFTGGDELE  116 (300)
Q Consensus       102 ~~y~IVlFT~gD~Le  116 (300)
                      ..+.||+++--|...
T Consensus       157 ~~~iivvvNK~D~~~  171 (632)
T PRK05506        157 IRHVVLAVNKMDLVD  171 (632)
T ss_pred             CCeEEEEEEeccccc
Confidence            257788888878654

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=89.50  E-value=1.2  Score=42.29  Aligned_cols=76  Identities=18%  Similarity=0.139  Sum_probs=46.2

Q ss_pred             EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhh-----------------ccCCCCCeEEEEEEeCC-CCCCHHHHHH
Q 036659           28 LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCI-----------------GMAKDGIHAVLVVFSVR-SRFSQEEEAA   89 (300)
Q Consensus        28 ~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci-----------------~l~~pGpHA~LLV~~v~-~rfT~EE~~a   89 (300)
                      .++|||||       |+.|. ......-+.|...|                 ....+-+||.|..++.. .++++.|-.+
T Consensus        64 ~LtiiDTp-------GfGd~-i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~  135 (281)
T PF00735_consen   64 NLTIIDTP-------GFGDN-IDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEF  135 (281)
T ss_dssp             EEEEEEEC--------CSSS-STHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHH
T ss_pred             EEEEEeCC-------Ccccc-ccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHH
Confidence            78999999       87664 33222222332222                 23345689999999974 3789999988


Q ss_pred             HHHHHHHhchhhhcceEEEEEcCCCCCC
Q 036659           90 LHSWQTLFGKNVFDYMIVVFTGGDELED  117 (300)
Q Consensus        90 l~~lq~lFG~~i~~y~IVlFT~gD~Le~  117 (300)
                      ++.|.+.      =+.|-|.+.+|.|..
T Consensus       136 mk~Ls~~------vNvIPvIaKaD~lt~  157 (281)
T PF00735_consen  136 MKRLSKR------VNVIPVIAKADTLTP  157 (281)
T ss_dssp             HHHHTTT------SEEEEEESTGGGS-H
T ss_pred             HHHhccc------ccEEeEEecccccCH
Confidence            8877543      356888999998865

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>cd04112 Rab26 Rab26 subfamily

Probab=89.35  E-value=6.6  Score=33.63  Aligned_cols=35  Identities=9%  Similarity=-0.059  Sum_probs=21.5

Q ss_pred             hhhhcCCeEEEEeCCCcchhhchHHHHHHHHHHHHHHHHcC
Q 036659          164 ILQLCDNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQND  204 (300)
Q Consensus       164 Ll~~C~~R~~~FnNk~~de~~~~~Qv~eLL~~Ve~mv~~Ng  204 (300)
                      +....+..|+-.+.++.      ..|.+|+..+-..+....
T Consensus       132 l~~~~~~~~~e~Sa~~~------~~v~~l~~~l~~~~~~~~  166 (191)
T cd04112         132 LAKEYGVPFMETSAKTG------LNVELAFTAVAKELKHRK  166 (191)
T ss_pred             HHHHcCCeEEEEeCCCC------CCHHHHHHHHHHHHHHhc
Confidence            44444555666665542      478888887776665553

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK12739 elongation factor G; Reviewed

Probab=89.23  E-value=2.3  Score=44.90  Aligned_cols=72  Identities=21%  Similarity=0.219  Sum_probs=48.5

Q ss_pred             ceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh
Q 036659           21 TIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN  100 (300)
Q Consensus        21 t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~  100 (300)
                      +..|+|+.+++||||       |.-|      +. .|+.+.+.    +.+++|+|+.....++..++..+..+.. .|  
T Consensus        67 ~~~~~~~~i~liDTP-------G~~~------f~-~e~~~al~----~~D~~ilVvDa~~g~~~qt~~i~~~~~~-~~--  125 (691)
T PRK12739         67 TCFWKGHRINIIDTP-------GHVD------FT-IEVERSLR----VLDGAVAVFDAVSGVEPQSETVWRQADK-YG--  125 (691)
T ss_pred             EEEECCEEEEEEcCC-------CHHH------HH-HHHHHHHH----HhCeEEEEEeCCCCCCHHHHHHHHHHHH-cC--
Confidence            356899999999999       7644      22 35666665    4479999999877788887777766543 33  


Q ss_pred             hhcceEEEEEcCCCC
Q 036659          101 VFDYMIVVFTGGDEL  115 (300)
Q Consensus       101 i~~y~IVlFT~gD~L  115 (300)
                        .-.||+.+--|..
T Consensus       126 --~p~iv~iNK~D~~  138 (691)
T PRK12739        126 --VPRIVFVNKMDRI  138 (691)
T ss_pred             --CCEEEEEECCCCC
Confidence              2345555544544

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=89.10  E-value=1.2  Score=43.61  Aligned_cols=83  Identities=14%  Similarity=0.167  Sum_probs=49.1

Q ss_pred             CCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCC--CCCHHHH
Q 036659           10 FGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRS--RFSQEEE   87 (300)
Q Consensus        10 ~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~--rfT~EE~   87 (300)
                      .|+|..+... ...+++..+++||||       |.-+..       +.+...    ..+.+++|+|+.+..  .++.+..
T Consensus        68 rG~T~d~~~~-~~~~~~~~i~liDtp-------G~~~~~-------~~~~~~----~~~aD~~ilVvDa~~~~~~~~~~~  128 (425)
T PRK12317         68 RGVTIDLAHK-KFETDKYYFTIVDCP-------GHRDFV-------KNMITG----ASQADAAVLVVAADDAGGVMPQTR  128 (425)
T ss_pred             cCccceeeeE-EEecCCeEEEEEECC-------Ccccch-------hhHhhc----hhcCCEEEEEEEcccCCCCCcchH
Confidence            4555555443 345789999999999       742221       122222    347899999999875  3444444


Q ss_pred             HHHHHHHHHhchhhhcceEEEEEcCCCC
Q 036659           88 AALHSWQTLFGKNVFDYMIVVFTGGDEL  115 (300)
Q Consensus        88 ~al~~lq~lFG~~i~~y~IVlFT~gD~L  115 (300)
                      ..+..+ ..+|.   ...||+.+--|..
T Consensus       129 ~~~~~~-~~~~~---~~iivviNK~Dl~  152 (425)
T PRK12317        129 EHVFLA-RTLGI---NQLIVAINKMDAV  152 (425)
T ss_pred             HHHHHH-HHcCC---CeEEEEEEccccc
Confidence            444333 34452   3567777766744

>PRK00007 elongation factor G; Reviewed

Probab=89.03  E-value=2.5  Score=44.64  Aligned_cols=73  Identities=16%  Similarity=0.131  Sum_probs=48.6

Q ss_pred             ceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh
Q 036659           21 TIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN  100 (300)
Q Consensus        21 t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~  100 (300)
                      +..|+|+.+++||||       |..|      +.. |+.+.+..    .+++|||+....-.+.+++..+..+.+. |. 
T Consensus        69 ~~~~~~~~~~liDTP-------G~~~------f~~-ev~~al~~----~D~~vlVvda~~g~~~qt~~~~~~~~~~-~~-  128 (693)
T PRK00007         69 TCFWKDHRINIIDTP-------GHVD------FTI-EVERSLRV----LDGAVAVFDAVGGVEPQSETVWRQADKY-KV-  128 (693)
T ss_pred             EEEECCeEEEEEeCC-------CcHH------HHH-HHHHHHHH----cCEEEEEEECCCCcchhhHHHHHHHHHc-CC-
Confidence            356889999999999       7544      333 56666653    4689999988767788887777765543 32 


Q ss_pred             hhcceEEEEEcCCCCC
Q 036659          101 VFDYMIVVFTGGDELE  116 (300)
Q Consensus       101 i~~y~IVlFT~gD~Le  116 (300)
                         -.||+.+--|...
T Consensus       129 ---p~iv~vNK~D~~~  141 (693)
T PRK00007        129 ---PRIAFVNKMDRTG  141 (693)
T ss_pred             ---CEEEEEECCCCCC
Confidence               2355555556443

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=88.49  E-value=2.4  Score=38.53  Aligned_cols=75  Identities=12%  Similarity=0.146  Sum_probs=45.7

Q ss_pred             CCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHH
Q 036659           12 APKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALH   91 (300)
Q Consensus        12 vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~   91 (300)
                      .|..|..+ ...++|..+.++|||       |+.+...........+..+    ...++++|+|+.+. . ..+....+.
T Consensus        33 tT~~~~~g-~~~~~~~~i~l~Dtp-------G~~~~~~~~~~~~~~~l~~----~~~ad~il~V~D~t-~-~~~~~~~~~   98 (233)
T cd01896          33 TTLTCVPG-VLEYKGAKIQLLDLP-------GIIEGAADGKGRGRQVIAV----ARTADLILMVLDAT-K-PEGHREILE   98 (233)
T ss_pred             ccccceEE-EEEECCeEEEEEECC-------CcccccccchhHHHHHHHh----hccCCEEEEEecCC-c-chhHHHHHH
Confidence            34456544 346789999999999       8765433222333444333    34778999999875 2 233455555


Q ss_pred             HHHHHhchh
Q 036659           92 SWQTLFGKN  100 (300)
Q Consensus        92 ~lq~lFG~~  100 (300)
                      ....-+|-.
T Consensus        99 ~~l~~~gi~  107 (233)
T cd01896          99 RELEGVGIR  107 (233)
T ss_pred             HHHHHcCce
Confidence            555666664

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd04113 Rab4 Rab4 subfamily

Probab=88.36  E-value=7  Score=31.73  Aligned_cols=48  Identities=25%  Similarity=0.314  Sum_probs=27.3

Q ss_pred             CCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhchhhhcceEEEEEcCCCCC
Q 036659           67 DGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGKNVFDYMIVVFTGGDELE  116 (300)
Q Consensus        67 pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~~i~~y~IVlFT~gD~Le  116 (300)
                      .+++++++|+.+..+-|-+. ...+..++.+.++++  ..+|+.|.-|..+
T Consensus        71 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iivv~nK~D~~~  119 (161)
T cd04113          71 RGAAGALLVYDITNRTSFEALPTWLSDARALASPNI--VVILVGNKSDLAD  119 (161)
T ss_pred             cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC--eEEEEEEchhcch
Confidence            48899999999975433332 122233333443332  4677777666443

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>PLN00223 ADP-ribosylation factor; Provisional

Probab=88.27  E-value=14  Score=31.80  Aligned_cols=76  Identities=12%  Similarity=0.176  Sum_probs=42.9

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ...++..+.++|||       |-       +... .+   ......|.|++++|+.+.++-+-+  .+...+..++-...
T Consensus        56 ~~~~~~~~~i~D~~-------Gq-------~~~~-~~---~~~~~~~a~~iI~V~D~s~~~s~~--~~~~~l~~~l~~~~  115 (181)
T PLN00223         56 VEYKNISFTVWDVG-------GQ-------DKIR-PL---WRHYFQNTQGLIFVVDSNDRDRVV--EARDELHRMLNEDE  115 (181)
T ss_pred             EEECCEEEEEEECC-------CC-------HHHH-HH---HHHHhccCCEEEEEEeCCcHHHHH--HHHHHHHHHhcCHh
Confidence            34567889999999       62       1111 11   112246889999999987432222  23445555554433


Q ss_pred             h-cceEEEEEcCCCCCC
Q 036659          102 F-DYMIVVFTGGDELED  117 (300)
Q Consensus       102 ~-~y~IVlFT~gD~Le~  117 (300)
                      . +.-++|+-++-++.+
T Consensus       116 ~~~~piilv~NK~Dl~~  132 (181)
T PLN00223        116 LRDAVLLVFANKQDLPN  132 (181)
T ss_pred             hCCCCEEEEEECCCCCC
Confidence            3 334555556655654

>TIGR00484 EF-G translation elongation factor EF-G

Probab=88.24  E-value=3.4  Score=43.58  Aligned_cols=81  Identities=16%  Similarity=0.160  Sum_probs=49.5

Q ss_pred             CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHH
Q 036659           11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL   90 (300)
Q Consensus        11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al   90 (300)
                      ++|-.+... +..|++..+++||||       |..|..       .++.+.+.    +.+++|+|+......+.++...+
T Consensus        60 giti~~~~~-~~~~~~~~i~liDTP-------G~~~~~-------~~~~~~l~----~~D~~ilVvda~~g~~~~~~~~~  120 (689)
T TIGR00484        60 GITITSAAT-TVFWKGHRINIIDTP-------GHVDFT-------VEVERSLR----VLDGAVAVLDAVGGVQPQSETVW  120 (689)
T ss_pred             CCCEecceE-EEEECCeEEEEEECC-------CCcchh-------HHHHHHHH----HhCEEEEEEeCCCCCChhHHHHH
Confidence            344444333 356889999999999       886642       23444443    45899999998766777766666


Q ss_pred             HHHHHHhchhhhcceEEEEEcCCCC
Q 036659           91 HSWQTLFGKNVFDYMIVVFTGGDEL  115 (300)
Q Consensus        91 ~~lq~lFG~~i~~y~IVlFT~gD~L  115 (300)
                      ..++. .|    .-.||+.+--|..
T Consensus       121 ~~~~~-~~----~p~ivviNK~D~~  140 (689)
T TIGR00484       121 RQANR-YE----VPRIAFVNKMDKT  140 (689)
T ss_pred             HHHHH-cC----CCEEEEEECCCCC
Confidence            55433 22    2345544544533

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=87.92  E-value=2.7  Score=37.41  Aligned_cols=72  Identities=17%  Similarity=0.231  Sum_probs=41.9

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCC-----CC--HHHHHHHHHHH
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSR-----FS--QEEEAALHSWQ   94 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r-----fT--~EE~~al~~lq   94 (300)
                      ..++|+.+++||||       |..+      +. .++..++    ...+++|+|+.+...     |.  .+....+... 
T Consensus        72 ~~~~~~~i~liDtp-------G~~~------~~-~~~~~~~----~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-  132 (219)
T cd01883          72 FETEKYRFTILDAP-------GHRD------FV-PNMITGA----SQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-  132 (219)
T ss_pred             EeeCCeEEEEEECC-------ChHH------HH-HHHHHHh----hhCCEEEEEEECCCCccccccccccchHHHHHHH-
Confidence            35789999999999       7533      22 3333332    367899999998642     11  1222222222 


Q ss_pred             HHhchhhhcceEEEEEcCCCC
Q 036659           95 TLFGKNVFDYMIVVFTGGDEL  115 (300)
Q Consensus        95 ~lFG~~i~~y~IVlFT~gD~L  115 (300)
                      ..+|   ...+||+++--|..
T Consensus       133 ~~~~---~~~iiivvNK~Dl~  150 (219)
T cd01883         133 RTLG---VKQLIVAVNKMDDV  150 (219)
T ss_pred             HHcC---CCeEEEEEEccccc
Confidence            2333   24677788777755

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=87.82  E-value=3.4  Score=44.37  Aligned_cols=45  Identities=36%  Similarity=0.492  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHhHHhhcchHHHHHHHHH------------------HHhcHHHHHHHHHHHHHH
Q 036659          237 KETSRLEQQLTEEQAAPLKVEEAAQLA------------------QMKSNDEIRKLRENLERA  281 (300)
Q Consensus       237 ~~~~~lE~q~~~eq~a~le~e~~~~~~------------------~~~~~~~i~~lre~le~~  281 (300)
                      +....+|+||.+|++++.+.|+.+++.                  +...+.|+++||.+|...
T Consensus       502 ~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~k  564 (697)
T PF09726_consen  502 RQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQK  564 (697)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356678888888888887766555542                  345667788888776553

; GO: 0016021 integral to membrane

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=87.32  E-value=7.7  Score=31.90  Aligned_cols=74  Identities=20%  Similarity=0.093  Sum_probs=40.6

Q ss_pred             eeeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHHh
Q 036659           22 IRIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSWQTLF   97 (300)
Q Consensus        22 ~~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~--~al~~lq~lF   97 (300)
                      ..++|.  .+.++|||       |.-....        +   ......+.|++|+|+.+.++-|-++.  .-+..+...+
T Consensus        39 ~~~~~~~~~~~i~Dt~-------G~~~~~~--------~---~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~  100 (174)
T smart00174       39 VEVDGKPVELGLWDTA-------GQEDYDR--------L---RPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC  100 (174)
T ss_pred             EEECCEEEEEEEEECC-------CCcccch--------h---chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC
Confidence            345665  47788999       6422111        1   11235689999999999754333322  1233333322


Q ss_pred             chhhhcceEEEEEcCCCCC
Q 036659           98 GKNVFDYMIVVFTGGDELE  116 (300)
Q Consensus        98 G~~i~~y~IVlFT~gD~Le  116 (300)
                      .   -..+|||-|.-|-..
T Consensus       101 ~---~~piilv~nK~Dl~~  116 (174)
T smart00174      101 P---NTPIILVGTKLDLRE  116 (174)
T ss_pred             C---CCCEEEEecChhhhh
Confidence            1   245677777767443

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=87.26  E-value=14  Score=29.67  Aligned_cols=71  Identities=18%  Similarity=0.114  Sum_probs=38.2

Q ss_pred             EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhchh---hh
Q 036659           27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGKN---VF  102 (300)
Q Consensus        27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~~---i~  102 (300)
                      ..+.++|||       |.-..           .........+.+++|+|+.+..+-|-++ ..-+..+....++.   .-
T Consensus        49 ~~l~i~Dt~-------G~~~~-----------~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  110 (168)
T cd04119          49 VRVNFFDLS-------GHPEY-----------LEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMEN  110 (168)
T ss_pred             EEEEEEECC-------ccHHH-----------HHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCC
Confidence            467799999       74211           1112223468899999999874422221 12223333333321   12


Q ss_pred             cceEEEEEcCCCC
Q 036659          103 DYMIVVFTGGDEL  115 (300)
Q Consensus       103 ~y~IVlFT~gD~L  115 (300)
                      .-.|+|.|-.|..
T Consensus       111 ~piilv~nK~Dl~  123 (168)
T cd04119         111 IVVVVCANKIDLT  123 (168)
T ss_pred             ceEEEEEEchhcc
Confidence            3467777777754

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01878 HflX HflX subfamily

Probab=87.22  E-value=5  Score=34.47  Aligned_cols=83  Identities=14%  Similarity=0.044  Sum_probs=44.9

Q ss_pred             eCCE-EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh
Q 036659           24 IQVV-LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF  102 (300)
Q Consensus        24 ~~Gr-~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~  102 (300)
                      +++. .+.++|||       |+-+. .... .......-+ ....+.+++++|+.+..+-+.++...+..+...++.. -
T Consensus        85 ~~~~~~~~i~Dt~-------G~~~~-~~~~-~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~-~  153 (204)
T cd01878          85 LPDGREVLLTDTV-------GFIRD-LPHQ-LVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAE-D  153 (204)
T ss_pred             ecCCceEEEeCCC-------ccccC-CCHH-HHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcC-C
Confidence            3343 89999999       86432 1221 111111111 1234778999999987555555443332222223321 1


Q ss_pred             cceEEEEEcCCCCCC
Q 036659          103 DYMIVVFTGGDELED  117 (300)
Q Consensus       103 ~y~IVlFT~gD~Le~  117 (300)
                      ...|||+|--|.+..
T Consensus       154 ~~viiV~NK~Dl~~~  168 (204)
T cd01878         154 IPMILVLNKIDLLDD  168 (204)
T ss_pred             CCEEEEEEccccCCh
Confidence            457888888886654

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=87.14  E-value=3.3  Score=39.00  Aligned_cols=76  Identities=17%  Similarity=0.138  Sum_probs=46.9

Q ss_pred             CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhc----cCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh
Q 036659           25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIG----MAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN  100 (300)
Q Consensus        25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~----l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~  100 (300)
                      .|..+.+||||       |....   ......|+.+-..    ..+.+||-++||++..  ..++..   ... ..|-+ 
T Consensus       153 ~~~D~ViIDT~-------G~~~~---d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~--~~~~~~---~~~-~~f~~-  215 (272)
T TIGR00064       153 RNIDVVLIDTA-------GRLQN---KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT--TGQNAL---EQA-KVFNE-  215 (272)
T ss_pred             CCCCEEEEeCC-------CCCcc---hHHHHHHHHHHHHHHhcccCCCCceEEEEEECC--CCHHHH---HHH-HHHHh-
Confidence            57789999999       65442   3444455555443    3456899999999985  233333   222 22222 


Q ss_pred             hhcceEEEEEcCCCCCC
Q 036659          101 VFDYMIVVFTGGDELED  117 (300)
Q Consensus       101 i~~y~IVlFT~gD~Le~  117 (300)
                      .....=|+||.=|+-..
T Consensus       216 ~~~~~g~IlTKlDe~~~  232 (272)
T TIGR00064       216 AVGLTGIILTKLDGTAK  232 (272)
T ss_pred             hCCCCEEEEEccCCCCC
Confidence            23467889998776543

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>cd04118 Rab24 Rab24 subfamily

Probab=87.06  E-value=13  Score=31.46  Aligned_cols=46  Identities=20%  Similarity=0.200  Sum_probs=25.9

Q ss_pred             CCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhchhhhcceEEEEEcCCCC
Q 036659           67 DGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGKNVFDYMIVVFTGGDEL  115 (300)
Q Consensus        67 pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~~i~~y~IVlFT~gD~L  115 (300)
                      .+.|++|+|+.+..+-|-++ ...+..++.. ..  -.-.|||.|..|-.
T Consensus        72 ~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~--~~piilv~nK~Dl~  118 (193)
T cd04118          72 RGAKAAIVCYDLTDSSSFERAKFWVKELQNL-EE--HCKIYLCGTKSDLI  118 (193)
T ss_pred             CCCCEEEEEEECCCHHHHHHHHHHHHHHHhc-CC--CCCEEEEEEccccc
Confidence            47899999999874422222 1122222221 11  23578888888843

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=87.02  E-value=2.4  Score=38.82  Aligned_cols=119  Identities=20%  Similarity=0.202  Sum_probs=64.2

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ..++|..+++||||       |..|+       ..+...++.    +.+++++|+.............+..+. .+|   
T Consensus        59 ~~~~~~~i~liDtP-------G~~~f-------~~~~~~~l~----~aD~~i~Vvd~~~g~~~~~~~~~~~~~-~~~---  116 (268)
T cd04170          59 LEWKGHKINLIDTP-------GYADF-------VGETRAALR----AADAALVVVSAQSGVEVGTEKLWEFAD-EAG---  116 (268)
T ss_pred             EEECCEEEEEEECc-------CHHHH-------HHHHHHHHH----HCCEEEEEEeCCCCCCHHHHHHHHHHH-HcC---
Confidence            35789999999999       76542       233444443    567899999887555554444444332 222   


Q ss_pred             hcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcCCeEEEEeC
Q 036659          102 FDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDN  177 (300)
Q Consensus       102 ~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~R~~~FnN  177 (300)
                       .-.+|+++.-|....+-...-+.|++    .+.  .--+|.+++..=+.+|        ++++.....+-+.|.+
T Consensus       117 -~p~iivvNK~D~~~~~~~~~~~~l~~----~~~--~~~~~~~ip~~~~~~~--------~~~vd~~~~~~~~~~~  177 (268)
T cd04170         117 -IPRIIFINKMDRERADFDKTLAALQE----AFG--RPVVPLQLPIGEGDDF--------KGVVDLLTEKAYIYSP  177 (268)
T ss_pred             -CCEEEEEECCccCCCCHHHHHHHHHH----HhC--CCeEEEEecccCCCce--------eEEEEcccCEEEEccC
Confidence             24566777777554311111122322    121  1234445544444554        2356666667777743

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PLN03126 Elongation factor Tu; Provisional

Probab=86.96  E-value=4.2  Score=41.49  Aligned_cols=71  Identities=13%  Similarity=0.141  Sum_probs=45.9

Q ss_pred             eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659           24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD  103 (300)
Q Consensus        24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~  103 (300)
                      ++++.+++||||       |.-      ++ .+++...+    .++++.|||+....-.....+..+..+. .+|   ..
T Consensus       141 ~~~~~i~liDtP-------Gh~------~f-~~~~~~g~----~~aD~ailVVda~~G~~~qt~e~~~~~~-~~g---i~  198 (478)
T PLN03126        141 TENRHYAHVDCP-------GHA------DY-VKNMITGA----AQMDGAILVVSGADGPMPQTKEHILLAK-QVG---VP  198 (478)
T ss_pred             cCCcEEEEEECC-------CHH------HH-HHHHHHHH----hhCCEEEEEEECCCCCcHHHHHHHHHHH-HcC---CC
Confidence            578899999999       632      22 23444444    4889999999876445555444444333 334   46


Q ss_pred             ceEEEEEcCCCCC
Q 036659          104 YMIVVFTGGDELE  116 (300)
Q Consensus       104 y~IVlFT~gD~Le  116 (300)
                      +.||+++--|...
T Consensus       199 ~iIvvvNK~Dl~~  211 (478)
T PLN03126        199 NMVVFLNKQDQVD  211 (478)
T ss_pred             eEEEEEecccccC
Confidence            7888899888654

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=86.74  E-value=5.7  Score=40.46  Aligned_cols=68  Identities=9%  Similarity=0.073  Sum_probs=43.2

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCC-CHHHHHHHHHHHHHhchhhhcc
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSWQTLFGKNVFDY  104 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rf-T~EE~~al~~lq~lFG~~i~~y  104 (300)
                      .+.+++||||       |-       +...+++...+    .+++++|||+.+.... ..+-+..+. +...+|-   .+
T Consensus       116 ~~~i~~IDtP-------GH-------~~fi~~m~~g~----~~~D~alLVVda~~g~~~~qT~ehl~-i~~~lgi---~~  173 (460)
T PTZ00327        116 KRHVSFVDCP-------GH-------DILMATMLNGA----AVMDAALLLIAANESCPQPQTSEHLA-AVEIMKL---KH  173 (460)
T ss_pred             cceEeeeeCC-------CH-------HHHHHHHHHHH----hhCCEEEEEEECCCCccchhhHHHHH-HHHHcCC---Cc
Confidence            5689999999       72       33344544444    4789999999987332 222222232 3345563   68


Q ss_pred             eEEEEEcCCCC
Q 036659          105 MIVVFTGGDEL  115 (300)
Q Consensus       105 ~IVlFT~gD~L  115 (300)
                      .||++|--|..
T Consensus       174 iIVvlNKiDlv  184 (460)
T PTZ00327        174 IIILQNKIDLV  184 (460)
T ss_pred             EEEEEeccccc
Confidence            89999988855

>cd04110 Rab35 Rab35 subfamily

Probab=86.59  E-value=20  Score=30.98  Aligned_cols=15  Identities=40%  Similarity=0.753  Sum_probs=12.2

Q ss_pred             CCCeEEEEEEeCCCC
Q 036659           67 DGIHAVLVVFSVRSR   81 (300)
Q Consensus        67 pGpHA~LLV~~v~~r   81 (300)
                      .+.++|++|+.+..+
T Consensus        77 ~~a~~iilv~D~~~~   91 (199)
T cd04110          77 RGTHGVIVVYDVTNG   91 (199)
T ss_pred             CCCcEEEEEEECCCH
Confidence            467999999998743

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=86.50  E-value=4.8  Score=32.16  Aligned_cols=43  Identities=16%  Similarity=0.094  Sum_probs=28.5

Q ss_pred             CCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceEEEEEcCCCC
Q 036659           65 AKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDEL  115 (300)
Q Consensus        65 ~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~IVlFT~gD~L  115 (300)
                      ...+.|++++|+.+....|..+.    .+...++    ..+|+|++--|-.
T Consensus        59 ~~~~ad~vilv~d~~~~~s~~~~----~~~~~~~----~p~ilv~NK~Dl~  101 (142)
T TIGR02528        59 TAADADVIALVQSATDPESRFPP----GFASIFV----KPVIGLVTKIDLA  101 (142)
T ss_pred             HhhcCCEEEEEecCCCCCcCCCh----hHHHhcc----CCeEEEEEeeccC
Confidence            36799999999999766654432    2333343    2677888877743

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd04123 Rab21 Rab21 subfamily

Probab=86.24  E-value=15  Score=29.20  Aligned_cols=47  Identities=11%  Similarity=0.089  Sum_probs=28.0

Q ss_pred             CCCeEEEEEEeCCCCCCHHHHH-HHHHHHHHhchhhhcceEEEEEcCCCC
Q 036659           67 DGIHAVLVVFSVRSRFSQEEEA-ALHSWQTLFGKNVFDYMIVVFTGGDEL  115 (300)
Q Consensus        67 pGpHA~LLV~~v~~rfT~EE~~-al~~lq~lFG~~i~~y~IVlFT~gD~L  115 (300)
                      .+.|++++|+.+..+-+-++.. .++.++.....  -...|||+|.-|..
T Consensus        71 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~  118 (162)
T cd04123          71 RDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLE  118 (162)
T ss_pred             ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccc
Confidence            5789999999986443333322 22334444332  23578888877755

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04136 Rap_like Rap-like subfamily

Probab=86.22  E-value=13  Score=30.03  Aligned_cols=48  Identities=15%  Similarity=0.038  Sum_probs=26.2

Q ss_pred             CCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhchhhhcceEEEEEcCCC
Q 036659           66 KDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFGKNVFDYMIVVFTGGDE  114 (300)
Q Consensus        66 ~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG~~i~~y~IVlFT~gD~  114 (300)
                      ..+.|++|+|+.+.++-|-++. ..++.+...-+.. -.-.|||.|--|-
T Consensus        70 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piilv~nK~Dl  118 (163)
T cd04136          70 IKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTE-NVPMVLVGNKCDL  118 (163)
T ss_pred             hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC-CCCEEEEEECccc
Confidence            3578999999999744333322 2223333332221 1245677776663

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd00876 Ras Ras family

Probab=86.19  E-value=8.2  Score=30.69  Aligned_cols=76  Identities=16%  Similarity=0.034  Sum_probs=40.6

Q ss_pred             eeeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhc
Q 036659           22 IRIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFG   98 (300)
Q Consensus        22 ~~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG   98 (300)
                      ...+|  ..+.++|||       |..+.       ......+    -.+.+++++|+.+.+.-+-++ ......+....+
T Consensus        40 ~~~~~~~~~~~l~D~~-------g~~~~-------~~~~~~~----~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~  101 (160)
T cd00876          40 IVVDGETYTLDILDTA-------GQEEF-------SAMRDLY----IRQGDGFILVYSITDRESFEEIKGYREQILRVKD  101 (160)
T ss_pred             EEECCEEEEEEEEECC-------ChHHH-------HHHHHHH----HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence            34454  467889999       64331       1112222    236799999999863322222 122233333333


Q ss_pred             hhhhcceEEEEEcCCCCC
Q 036659           99 KNVFDYMIVVFTGGDELE  116 (300)
Q Consensus        99 ~~i~~y~IVlFT~gD~Le  116 (300)
                      . .-...+|+.+.-|...
T Consensus       102 ~-~~~p~ivv~nK~D~~~  118 (160)
T cd00876         102 D-EDIPIVLVGNKCDLEN  118 (160)
T ss_pred             C-CCCcEEEEEECCcccc
Confidence            1 2346678888877654

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04148 RGK RGK subfamily

Probab=86.18  E-value=12  Score=33.37  Aligned_cols=73  Identities=21%  Similarity=0.134  Sum_probs=38.0

Q ss_pred             eeeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhc
Q 036659           22 IRIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFG   98 (300)
Q Consensus        22 ~~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG   98 (300)
                      ..++|  ..+.++|||       |..      ..+..   .|...   +.|++|+|+.+.++-|-+. ...+..+... .
T Consensus        43 i~~~~~~~~l~i~Dt~-------G~~------~~~~~---~~~~~---~ad~iilV~d~td~~S~~~~~~~~~~l~~~-~  102 (221)
T cd04148          43 VSVDGEESTLVVIDHW-------EQE------MWTED---SCMQY---QGDAFVVVYSVTDRSSFERASELRIQLRRN-R  102 (221)
T ss_pred             EEECCEEEEEEEEeCC-------Ccc------hHHHh---HHhhc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHh-c
Confidence            34544  568899999       754      11111   12222   8999999999975433322 1122222222 1


Q ss_pred             hhhhcceEEEEEcCCC
Q 036659           99 KNVFDYMIVVFTGGDE  114 (300)
Q Consensus        99 ~~i~~y~IVlFT~gD~  114 (300)
                      ...-.-.|||.|--|-
T Consensus       103 ~~~~~piilV~NK~Dl  118 (221)
T cd04148         103 QLEDRPIILVGNKSDL  118 (221)
T ss_pred             CCCCCCEEEEEEChhc
Confidence            1112345777776663

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04122 Rab14 Rab14 subfamily

Probab=86.14  E-value=18  Score=29.80  Aligned_cols=16  Identities=25%  Similarity=0.526  Sum_probs=13.1

Q ss_pred             CCCCeEEEEEEeCCCC
Q 036659           66 KDGIHAVLVVFSVRSR   81 (300)
Q Consensus        66 ~pGpHA~LLV~~v~~r   81 (300)
                      ..+.|++|+|+.+.++
T Consensus        72 ~~~~~~~ilv~d~~~~   87 (166)
T cd04122          72 YRGAAGALMVYDITRR   87 (166)
T ss_pred             hcCCCEEEEEEECCCH
Confidence            3589999999999743

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>COG1160 Predicted GTPases [General function prediction only]

Probab=86.14  E-value=21  Score=36.73  Aligned_cols=93  Identities=16%  Similarity=0.135  Sum_probs=63.1

Q ss_pred             ceeeCCEEEEEEeCCCCcccCcccCCC--CCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 036659           21 TIRIQVVLEKVIDTRWVRHAIARLFDF--SAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFG   98 (300)
Q Consensus        21 t~~~~Gr~v~VIDTP~w~~~~~glfd~--~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG   98 (300)
                      ..+++|+...+|||-|.|... .+.+.  ..+.-...+.|.+        .++||||+.....||++|...+..+.+   
T Consensus       220 ~~e~~~~~~~liDTAGiRrk~-ki~e~~E~~Sv~rt~~aI~~--------a~vvllviDa~~~~~~qD~~ia~~i~~---  287 (444)
T COG1160         220 EFERDGRKYVLIDTAGIRRKG-KITESVEKYSVARTLKAIER--------ADVVLLVIDATEGISEQDLRIAGLIEE---  287 (444)
T ss_pred             eEEECCeEEEEEECCCCCccc-ccccceEEEeehhhHhHHhh--------cCEEEEEEECCCCchHHHHHHHHHHHH---
Confidence            457889999999999666533 22221  1122333344443        369999999988899999999888754   


Q ss_pred             hhhhcceEEEEEcCCCCCCCcccHHHhhh
Q 036659           99 KNVFDYMIVVFTGGDELEDNDETLEDYLG  127 (300)
Q Consensus        99 ~~i~~y~IVlFT~gD~Le~~~~tledyl~  127 (300)
                        .-+=.||||---|-++.+..++++|-.
T Consensus       288 --~g~~~vIvvNKWDl~~~~~~~~~~~k~  314 (444)
T COG1160         288 --AGRGIVIVVNKWDLVEEDEATMEEFKK  314 (444)
T ss_pred             --cCCCeEEEEEccccCCchhhHHHHHHH
Confidence              455678888888877754346666643

>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function

Probab=86.05  E-value=9.7  Score=36.77  Aligned_cols=34  Identities=18%  Similarity=-0.006  Sum_probs=25.9

Q ss_pred             hHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHh
Q 036659          186 TEQIWKLLSLVNSVAVQNDGQPYTDDIFVELKLL  219 (300)
Q Consensus       186 ~~Qv~eLL~~Ve~mv~~NgG~~yt~e~f~e~e~~  219 (300)
                      -+.+..||.+|=.++..-..-.++++....+.+.
T Consensus       230 ~~~~~~l~~~v~~l~D~~~~~~l~~e~~~K~~k~  263 (321)
T PF07946_consen  230 MEALEPLLKLVFYLIDKLARFKLSPEAKKKAKKN  263 (321)
T ss_pred             HHHHHHHHHHHHHHHHHhheeeeCHHHHHHHHHH
Confidence            5678888888877777766667888888777753

One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=85.66  E-value=15  Score=30.80  Aligned_cols=85  Identities=11%  Similarity=0.038  Sum_probs=45.0

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ...++..+.++|||       |-..       .......+    ..+.|++++|+....+-+-+  .+-..+..++....
T Consensus        38 ~~~~~~~~~i~D~~-------G~~~-------~~~~~~~~----~~~a~~ii~V~D~s~~~s~~--~~~~~l~~l~~~~~   97 (167)
T cd04161          38 LRLDKYEVCIFDLG-------GGAN-------FRGIWVNY----YAEAHGLVFVVDSSDDDRVQ--EVKEILRELLQHPR   97 (167)
T ss_pred             EEECCEEEEEEECC-------CcHH-------HHHHHHHH----HcCCCEEEEEEECCchhHHH--HHHHHHHHHHcCcc
Confidence            45678899999999       7321       11112222    35889999999986433222  22334444443322


Q ss_pred             -hcceEEEEEcCCCCCCCcccHHHhhh
Q 036659          102 -FDYMIVVFTGGDELEDNDETLEDYLG  127 (300)
Q Consensus       102 -~~y~IVlFT~gD~Le~~~~tledyl~  127 (300)
                       ...-|+|+-++-++.+. .+.++.+.
T Consensus        98 ~~~~piliv~NK~Dl~~~-~~~~~i~~  123 (167)
T cd04161          98 VSGKPILVLANKQDKKNA-LLGADVIE  123 (167)
T ss_pred             ccCCcEEEEEeCCCCcCC-CCHHHHHH
Confidence             22334455555556543 34444443

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd01882 BMS1 Bms1

Probab=85.64  E-value=4.5  Score=36.54  Aligned_cols=68  Identities=18%  Similarity=0.162  Sum_probs=44.5

Q ss_pred             CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659           25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY  104 (300)
Q Consensus        25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y  104 (300)
                      +++++++||||       |.+          .++...+    ...+++|+|+.....++..+...+..+.. +|   ...
T Consensus        81 ~~~~i~~vDtP-------g~~----------~~~l~~a----k~aDvVllviDa~~~~~~~~~~i~~~l~~-~g---~p~  135 (225)
T cd01882          81 KKRRLTFIECP-------NDI----------NAMIDIA----KVADLVLLLIDASFGFEMETFEFLNILQV-HG---FPR  135 (225)
T ss_pred             CCceEEEEeCC-------chH----------HHHHHHH----HhcCEEEEEEecCcCCCHHHHHHHHHHHH-cC---CCe
Confidence            68899999999       632          1222222    34579999999876778777666555543 23   234


Q ss_pred             eEEEEEcCCCCCC
Q 036659          105 MIVVFTGGDELED  117 (300)
Q Consensus       105 ~IVlFT~gD~Le~  117 (300)
                      .|+|+|.-|.+.+
T Consensus       136 vi~VvnK~D~~~~  148 (225)
T cd01882         136 VMGVLTHLDLFKK  148 (225)
T ss_pred             EEEEEeccccCCc
Confidence            5668898887643

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>cd01860 Rab5_related Rab5-related subfamily

Probab=85.58  E-value=17  Score=29.27  Aligned_cols=14  Identities=29%  Similarity=0.553  Sum_probs=11.8

Q ss_pred             CCCCeEEEEEEeCC
Q 036659           66 KDGIHAVLVVFSVR   79 (300)
Q Consensus        66 ~pGpHA~LLV~~v~   79 (300)
                      ..+.|++++|+.+.
T Consensus        71 ~~~~~~~i~v~d~~   84 (163)
T cd01860          71 YRGAAAAIVVYDIT   84 (163)
T ss_pred             hccCCEEEEEEECc
Confidence            34789999999986

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04140 ARHI_like ARHI subfamily

Probab=85.56  E-value=11  Score=30.95  Aligned_cols=71  Identities=24%  Similarity=0.271  Sum_probs=40.6

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhchhhhcc
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFGKNVFDY  104 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG~~i~~y  104 (300)
                      ...+.++|||       |.-...    .+.       .....+.|++|+|+.+.++-|-++. ..++.+..+.+....+.
T Consensus        48 ~~~l~i~Dt~-------G~~~~~----~~~-------~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~  109 (165)
T cd04140          48 ICTLQITDTT-------GSHQFP----AMQ-------RLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKI  109 (165)
T ss_pred             EEEEEEEECC-------CCCcch----HHH-------HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            3467899999       653321    111       1123478999999999865555443 33455655555433333


Q ss_pred             -eEEEEEcCCC
Q 036659          105 -MIVVFTGGDE  114 (300)
Q Consensus       105 -~IVlFT~gD~  114 (300)
                       .|||.+.-|.
T Consensus       110 piilv~nK~Dl  120 (165)
T cd04140         110 PIMLVGNKCDE  120 (165)
T ss_pred             CEEEEEECccc
Confidence             4555555553

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd01863 Rab18 Rab18 subfamily

Probab=85.36  E-value=15  Score=29.62  Aligned_cols=36  Identities=22%  Similarity=0.259  Sum_probs=22.9

Q ss_pred             EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCC
Q 036659           27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRS   80 (300)
Q Consensus        27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~   80 (300)
                      ..+.++|||       |.....       .....+    ..+.|++|+|+.+.+
T Consensus        49 ~~~~l~D~~-------g~~~~~-------~~~~~~----~~~~d~~i~v~d~~~   84 (161)
T cd01863          49 VKLAIWDTA-------GQERFR-------TLTSSY----YRGAQGVILVYDVTR   84 (161)
T ss_pred             EEEEEEECC-------Cchhhh-------hhhHHH----hCCCCEEEEEEECCC
Confidence            468899999       742211       111222    247899999999863

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04109 Rab28 Rab28 subfamily

Probab=85.26  E-value=17  Score=31.89  Aligned_cols=49  Identities=20%  Similarity=0.188  Sum_probs=26.3

Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHH-HHHHHHHHhchhhhc-ceEEEEEcCCC
Q 036659           66 KDGIHAVLVVFSVRSRFSQEEEA-ALHSWQTLFGKNVFD-YMIVVFTGGDE  114 (300)
Q Consensus        66 ~pGpHA~LLV~~v~~rfT~EE~~-al~~lq~lFG~~i~~-y~IVlFT~gD~  114 (300)
                      ..+.|++|+|+.+.++-|-+... -+..+....+..... -.|||.+--|-
T Consensus        71 ~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL  121 (215)
T cd04109          71 IYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDL  121 (215)
T ss_pred             hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccc
Confidence            35899999999987543333322 233344444322122 24556665553

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=85.05  E-value=3.7  Score=39.64  Aligned_cols=77  Identities=17%  Similarity=0.160  Sum_probs=48.2

Q ss_pred             eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccC----CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhch
Q 036659           24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMA----KDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGK   99 (300)
Q Consensus        24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~----~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~   99 (300)
                      .++..+++||||       |.-..   .+....|+.+....+    +..||-.+||++...   ..  .++......+  
T Consensus       194 ~~~~D~ViIDTa-------Gr~~~---~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~---g~--~~~~~a~~f~--  256 (318)
T PRK10416        194 ARGIDVLIIDTA-------GRLHN---KTNLMEELKKIKRVIKKADPDAPHEVLLVLDATT---GQ--NALSQAKAFH--  256 (318)
T ss_pred             hCCCCEEEEeCC-------CCCcC---CHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC---Ch--HHHHHHHHHH--
Confidence            356789999999       65443   234445666655433    457999999999862   22  2333333322  


Q ss_pred             hhhcceEEEEEcCCCCCC
Q 036659          100 NVFDYMIVVFTGGDELED  117 (300)
Q Consensus       100 ~i~~y~IVlFT~gD~Le~  117 (300)
                      +.....-+++|.-|+-..
T Consensus       257 ~~~~~~giIlTKlD~t~~  274 (318)
T PRK10416        257 EAVGLTGIILTKLDGTAK  274 (318)
T ss_pred             hhCCCCEEEEECCCCCCC
Confidence            234677899999886543

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=85.01  E-value=20  Score=30.21  Aligned_cols=46  Identities=22%  Similarity=0.239  Sum_probs=25.0

Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc--ceEEEEEcCC
Q 036659           66 KDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD--YMIVVFTGGD  113 (300)
Q Consensus        66 ~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~--y~IVlFT~gD  113 (300)
                      ..+.+++++|+.+.++-|-+  ....++..++....-+  -.|+|.|..|
T Consensus        70 ~~~ad~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~iilVgnK~D  117 (170)
T cd04108          70 YRGAQAIIIVFDLTDVASLE--HTRQWLEDALKENDPSSVLLFLVGTKKD  117 (170)
T ss_pred             hcCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCCeEEEEEEChh
Confidence            45899999999986322221  1223333343332222  2567777667

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04125 RabA_like RabA-like subfamily

Probab=84.89  E-value=17  Score=30.82  Aligned_cols=49  Identities=20%  Similarity=0.230  Sum_probs=27.7

Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHH-HHHHHHHHhchhhhcceEEEEEcCCCCC
Q 036659           66 KDGIHAVLVVFSVRSRFSQEEEA-ALHSWQTLFGKNVFDYMIVVFTGGDELE  116 (300)
Q Consensus        66 ~pGpHA~LLV~~v~~rfT~EE~~-al~~lq~lFG~~i~~y~IVlFT~gD~Le  116 (300)
                      ..+.+|+|+|+.+.++-|-++.. .+..+....+..  ...||+.+.-|-.+
T Consensus        70 ~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~--~~~ivv~nK~Dl~~  119 (188)
T cd04125          70 YRGAHGYLLVYDVTDQESFENLKFWINEINRYAREN--VIKVIVANKSDLVN  119 (188)
T ss_pred             ccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECCCCcc
Confidence            45889999999987433322211 122333333332  34677778777543

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=84.42  E-value=25  Score=30.11  Aligned_cols=74  Identities=9%  Similarity=0.077  Sum_probs=41.8

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ...++..+.++|||       |--.           ..........+.|++|+|+.+.++-+-+  .+...+..++....
T Consensus        56 ~~~~~~~~~l~D~~-------G~~~-----------~~~~~~~~~~~ad~iI~v~D~t~~~s~~--~~~~~l~~~~~~~~  115 (182)
T PTZ00133         56 VEYKNLKFTMWDVG-------GQDK-----------LRPLWRHYYQNTNGLIFVVDSNDRERIG--DAREELERMLSEDE  115 (182)
T ss_pred             EEECCEEEEEEECC-------CCHh-----------HHHHHHHHhcCCCEEEEEEeCCCHHHHH--HHHHHHHHHHhCHh
Confidence            34567889999999       6411           1111222345899999999986332212  12344555555433


Q ss_pred             h--cceEEEEEcCCCCC
Q 036659          102 F--DYMIVVFTGGDELE  116 (300)
Q Consensus       102 ~--~y~IVlFT~gD~Le  116 (300)
                      .  ...|||.+.-| +.
T Consensus       116 ~~~~piilv~NK~D-l~  131 (182)
T PTZ00133        116 LRDAVLLVFANKQD-LP  131 (182)
T ss_pred             hcCCCEEEEEeCCC-CC
Confidence            2  24566666555 54

>COG0218 Predicted GTPase [General function prediction only]

Probab=84.39  E-value=31  Score=32.05  Aligned_cols=78  Identities=15%  Similarity=0.116  Sum_probs=56.9

Q ss_pred             EEEEeCCCCcccCcccCCCCC-ChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceEE
Q 036659           29 EKVIDTRWVRHAIARLFDFSA-GSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMIV  107 (300)
Q Consensus        29 v~VIDTP~w~~~~~glfd~~~-~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~IV  107 (300)
                      ..+||-||.     |+-..+. -.+..++.|...+.--.. +-++++++-.+..+++.|+..++++...     ---.+|
T Consensus        72 ~~lVDlPGY-----GyAkv~k~~~e~w~~~i~~YL~~R~~-L~~vvlliD~r~~~~~~D~em~~~l~~~-----~i~~~v  140 (200)
T COG0218          72 LRLVDLPGY-----GYAKVPKEVKEKWKKLIEEYLEKRAN-LKGVVLLIDARHPPKDLDREMIEFLLEL-----GIPVIV  140 (200)
T ss_pred             EEEEeCCCc-----ccccCCHHHHHHHHHHHHHHHhhchh-heEEEEEEECCCCCcHHHHHHHHHHHHc-----CCCeEE
Confidence            789999965     5433221 235666777777776555 8899999999866777799888887542     335789


Q ss_pred             EEEcCCCCCC
Q 036659          108 VFTGGDELED  117 (300)
Q Consensus       108 lFT~gD~Le~  117 (300)
                      |||-.|.+..
T Consensus       141 v~tK~DKi~~  150 (200)
T COG0218         141 VLTKADKLKK  150 (200)
T ss_pred             EEEccccCCh
Confidence            9999999986

>PRK13351 elongation factor G; Reviewed

Probab=84.31  E-value=8.2  Score=40.55  Aligned_cols=72  Identities=17%  Similarity=0.215  Sum_probs=46.6

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ..|++..+++||||       |..|+       ..+...++.    +.+++++|+......+.+....+..+.. .|   
T Consensus        68 ~~~~~~~i~liDtP-------G~~df-------~~~~~~~l~----~aD~~ilVvd~~~~~~~~~~~~~~~~~~-~~---  125 (687)
T PRK13351         68 CDWDNHRINLIDTP-------GHIDF-------TGEVERSLR----VLDGAVVVFDAVTGVQPQTETVWRQADR-YG---  125 (687)
T ss_pred             EEECCEEEEEEECC-------CcHHH-------HHHHHHHHH----hCCEEEEEEeCCCCCCHHHHHHHHHHHh-cC---
Confidence            46789999999999       76542       234444443    5588999999876777666655544332 22   


Q ss_pred             hcceEEEEEcCCCCC
Q 036659          102 FDYMIVVFTGGDELE  116 (300)
Q Consensus       102 ~~y~IVlFT~gD~Le  116 (300)
                       .-.+|+++.-|...
T Consensus       126 -~p~iiviNK~D~~~  139 (687)
T PRK13351        126 -IPRLIFINKMDRVG  139 (687)
T ss_pred             -CCEEEEEECCCCCC
Confidence             24566777767443

>cd04158 ARD1 ARD1 subfamily

Probab=84.31  E-value=23  Score=29.54  Aligned_cols=76  Identities=12%  Similarity=0.136  Sum_probs=40.5

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ...++..+.++|||       |......           .......+.+++++|+++..+-+-+  .+...+..++-...
T Consensus        38 ~~~~~~~i~l~Dt~-------G~~~~~~-----------~~~~~~~~ad~ii~V~D~s~~~s~~--~~~~~~~~~~~~~~   97 (169)
T cd04158          38 VEYKNLKFTIWDVG-------GKHKLRP-----------LWKHYYLNTQAVVFVVDSSHRDRVS--EAHSELAKLLTEKE   97 (169)
T ss_pred             EEECCEEEEEEECC-------CChhcch-----------HHHHHhccCCEEEEEEeCCcHHHHH--HHHHHHHHHhcChh
Confidence            34577899999999       7533211           1111124679999999986432222  23344555553322


Q ss_pred             h-cceEEEEEcCCCCCC
Q 036659          102 F-DYMIVVFTGGDELED  117 (300)
Q Consensus       102 ~-~y~IVlFT~gD~Le~  117 (300)
                      . +--|||+-++-++.+
T Consensus        98 ~~~~piilv~NK~Dl~~  114 (169)
T cd04158          98 LRDALLLIFANKQDVAG  114 (169)
T ss_pred             hCCCCEEEEEeCcCccc
Confidence            2 223444444544643

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>PRK12740 elongation factor G; Reviewed

Probab=84.14  E-value=8  Score=40.38  Aligned_cols=72  Identities=17%  Similarity=0.172  Sum_probs=47.2

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ..++|..+++||||       |..++       ..+...++.    ..+++|+|+......+......+..+.. .|   
T Consensus        55 ~~~~~~~i~liDtP-------G~~~~-------~~~~~~~l~----~aD~vllvvd~~~~~~~~~~~~~~~~~~-~~---  112 (668)
T PRK12740         55 CEWKGHKINLIDTP-------GHVDF-------TGEVERALR----VLDGAVVVVCAVGGVEPQTETVWRQAEK-YG---  112 (668)
T ss_pred             EEECCEEEEEEECC-------CcHHH-------HHHHHHHHH----HhCeEEEEEeCCCCcCHHHHHHHHHHHH-cC---
Confidence            56789999999999       76442       234444443    6789999999876666665555544332 22   


Q ss_pred             hcceEEEEEcCCCCC
Q 036659          102 FDYMIVVFTGGDELE  116 (300)
Q Consensus       102 ~~y~IVlFT~gD~Le  116 (300)
                       .-.||+++.-|...
T Consensus       113 -~p~iiv~NK~D~~~  126 (668)
T PRK12740        113 -VPRIIFVNKMDRAG  126 (668)
T ss_pred             -CCEEEEEECCCCCC
Confidence             24677888877554

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=84.01  E-value=23  Score=29.59  Aligned_cols=42  Identities=7%  Similarity=0.018  Sum_probs=26.1

Q ss_pred             eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCC
Q 036659           23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRF   82 (300)
Q Consensus        23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rf   82 (300)
                      ...+..+.++|||       |--...    .    +   ....-.+.|++|+|+....+.
T Consensus        40 ~~~~~~l~i~Dt~-------G~~~~~----~----~---~~~~~~~ad~ii~V~D~t~~~   81 (164)
T cd04162          40 PTQDAIMELLEIG-------GSQNLR----K----Y---WKRYLSGSQGLIFVVDSADSE   81 (164)
T ss_pred             eeCCeEEEEEECC-------CCcchh----H----H---HHHHHhhCCEEEEEEECCCHH
Confidence            3456788999999       642211    0    1   111245889999999986433

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=83.70  E-value=7.9  Score=40.65  Aligned_cols=70  Identities=24%  Similarity=0.312  Sum_probs=39.5

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ..|+|..+++||||       |..|+       ..++.+++.    ..+++|||+..........+..+..+.. .|  +
T Consensus        59 v~~~~~kinlIDTP-------Gh~DF-------~~ev~~~l~----~aD~alLVVDa~~G~~~qT~~~l~~a~~-~~--i  117 (594)
T TIGR01394        59 IRYNGTKINIVDTP-------GHADF-------GGEVERVLG----MVDGVLLLVDASEGPMPQTRFVLKKALE-LG--L  117 (594)
T ss_pred             EEECCEEEEEEECC-------CHHHH-------HHHHHHHHH----hCCEEEEEEeCCCCCcHHHHHHHHHHHH-CC--C
Confidence            56889999999999       75442       244555544    4467777777653333333333333322 22  1


Q ss_pred             hcceEEEEEcCCC
Q 036659          102 FDYMIVVFTGGDE  114 (300)
Q Consensus       102 ~~y~IVlFT~gD~  114 (300)
                       . .||+.+--|.
T Consensus       118 -p-~IVviNKiD~  128 (594)
T TIGR01394       118 -K-PIVVINKIDR  128 (594)
T ss_pred             -C-EEEEEECCCC
Confidence             2 3556665553

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04167 Snu114p Snu114p subfamily

Probab=83.60  E-value=9.5  Score=33.56  Aligned_cols=67  Identities=19%  Similarity=0.227  Sum_probs=42.1

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcce
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYM  105 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~  105 (300)
                      +..+++||||       |..+..       .+...++    .+.+++|+|+.+....+...+..+...   ...+  ...
T Consensus        70 ~~~i~iiDtp-------G~~~f~-------~~~~~~~----~~aD~~llVvD~~~~~~~~~~~~~~~~---~~~~--~p~  126 (213)
T cd04167          70 SYLFNIIDTP-------GHVNFM-------DEVAAAL----RLSDGVVLVVDVVEGVTSNTERLIRHA---ILEG--LPI  126 (213)
T ss_pred             EEEEEEEECC-------CCcchH-------HHHHHHH----HhCCEEEEEEECCCCCCHHHHHHHHHH---HHcC--CCE
Confidence            4689999999       866531       2233333    367899999998755555544333322   2122  467


Q ss_pred             EEEEEcCCCC
Q 036659          106 IVVFTGGDEL  115 (300)
Q Consensus       106 IVlFT~gD~L  115 (300)
                      +||++--|.+
T Consensus       127 iiviNK~D~~  136 (213)
T cd04167         127 VLVINKIDRL  136 (213)
T ss_pred             EEEEECcccC
Confidence            8888988865

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=83.60  E-value=16  Score=29.40  Aligned_cols=41  Identities=29%  Similarity=0.282  Sum_probs=26.1

Q ss_pred             eeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCC
Q 036659           23 RIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSR   81 (300)
Q Consensus        23 ~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r   81 (300)
                      .++|.  .+.++|||       |..+...           +......+.|++++|+.+..+
T Consensus        44 ~~~~~~~~~~i~Dt~-------G~~~~~~-----------~~~~~~~~~~~~ilv~d~~~~   86 (164)
T cd04145          44 EIDGQWAILDILDTA-------GQEEFSA-----------MREQYMRTGEGFLLVFSVTDR   86 (164)
T ss_pred             EECCEEEEEEEEECC-------CCcchhH-----------HHHHHHhhCCEEEEEEECCCH
Confidence            45664  57789999       7543321           111223478999999998743

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=83.50  E-value=3.3  Score=43.21  Aligned_cols=83  Identities=17%  Similarity=0.169  Sum_probs=50.8

Q ss_pred             CCCCCCCCCCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCC
Q 036659            2 RSGVSSRRFGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSR   81 (300)
Q Consensus         2 ~s~~s~~~~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r   81 (300)
                      ||=|||  -+-|+.=-..-...++|++|.++||-|||+      .++...+.++-+..+--.   ---|++++|+...-.
T Consensus       293 rsIVSp--v~GTTRDaiea~v~~~G~~v~L~DTAGiRe------~~~~~iE~~gI~rA~k~~---~~advi~~vvda~~~  361 (531)
T KOG1191|consen  293 RSIVSP--VPGTTRDAIEAQVTVNGVPVRLSDTAGIRE------ESNDGIEALGIERARKRI---ERADVILLVVDAEES  361 (531)
T ss_pred             ceEeCC--CCCcchhhheeEeecCCeEEEEEecccccc------ccCChhHHHhHHHHHHHH---hhcCEEEEEeccccc
Confidence            455666  333333333323568999999999998876      234455666555444222   246899999998444


Q ss_pred             CCHHHHHHHHHHHH
Q 036659           82 FSQEEEAALHSWQT   95 (300)
Q Consensus        82 fT~EE~~al~~lq~   95 (300)
                      -|.++-...+.+++
T Consensus       362 ~t~sd~~i~~~l~~  375 (531)
T KOG1191|consen  362 DTESDLKIARILET  375 (531)
T ss_pred             ccccchHHHHHHHH
Confidence            55666555555544

>cd01871 Rac1_like Rac1-like subfamily

Probab=83.03  E-value=16  Score=30.97  Aligned_cols=16  Identities=25%  Similarity=0.326  Sum_probs=13.3

Q ss_pred             CCCCCeEEEEEEeCCC
Q 036659           65 AKDGIHAVLVVFSVRS   80 (300)
Q Consensus        65 ~~pGpHA~LLV~~v~~   80 (300)
                      .-.+.|++|+|+.+.+
T Consensus        69 ~~~~~d~~ilv~d~~~   84 (174)
T cd01871          69 SYPQTDVFLICFSLVS   84 (174)
T ss_pred             hcCCCCEEEEEEECCC
Confidence            3458999999999974

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=82.37  E-value=3.3  Score=40.81  Aligned_cols=73  Identities=15%  Similarity=0.168  Sum_probs=43.2

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHH--HHHHHhch
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALH--SWQTLFGK   99 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~--~lq~lFG~   99 (300)
                      ..+++..++++|||       |--      ++ .+.+..    +..+.++++||+.+...-+.....+.+  .+...+| 
T Consensus        80 ~~~~~~~i~iiDtp-------Gh~------~f-~~~~~~----~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~-  140 (426)
T TIGR00483        80 FETDKYEVTIVDCP-------GHR------DF-IKNMIT----GASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG-  140 (426)
T ss_pred             EccCCeEEEEEECC-------CHH------HH-HHHHHh----hhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC-
Confidence            34568899999999       721      22 223333    335789999999997552221112211  1233445 


Q ss_pred             hhhcceEEEEEcCCCC
Q 036659          100 NVFDYMIVVFTGGDEL  115 (300)
Q Consensus       100 ~i~~y~IVlFT~gD~L  115 (300)
                        ..++||+.+--|..
T Consensus       141 --~~~iIVviNK~Dl~  154 (426)
T TIGR00483       141 --INQLIVAINKMDSV  154 (426)
T ss_pred             --CCeEEEEEEChhcc
Confidence              25788888887754

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=82.28  E-value=10  Score=38.86  Aligned_cols=102  Identities=16%  Similarity=0.095  Sum_probs=60.2

Q ss_pred             CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCC-CCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659           25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKD-GIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD  103 (300)
Q Consensus        25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~p-GpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~  103 (300)
                      ++..+.|||||       |....+   .....++.+.+....+ -||-++||++....     ...+..+...|  ..+.
T Consensus       298 ~~~D~VLIDTa-------Gr~~rd---~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~-----~~~~~~~~~~f--~~~~  360 (432)
T PRK12724        298 DGSELILIDTA-------GYSHRN---LEQLERMQSFYSCFGEKDSVENLLVLSSTSS-----YHHTLTVLKAY--ESLN  360 (432)
T ss_pred             CCCCEEEEeCC-------CCCccC---HHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC-----HHHHHHHHHHh--cCCC
Confidence            46688999999       765432   2444666666655443 37888999987622     23445556667  4567


Q ss_pred             ceEEEEEcCCCCCCCcccHHHhhhhCCCcccc--ccccCCCchh
Q 036659          104 YMIVVFTGGDELEDNDETLEDYLGRECPKPLK--SSRLKVPYSI  145 (300)
Q Consensus       104 y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk--~~~~~~~~~~  145 (300)
                      +.=++||-=|+-..- .++=..+.. .+.|+.  .-+=+||..|
T Consensus       361 ~~glIlTKLDEt~~~-G~il~i~~~-~~lPI~ylt~GQ~VPeDi  402 (432)
T PRK12724        361 YRRILLTKLDEADFL-GSFLELADT-YSKSFTYLSVGQEVPFDI  402 (432)
T ss_pred             CCEEEEEcccCCCCc-cHHHHHHHH-HCCCEEEEecCCCCCCCH
Confidence            788899988875433 244444433 123332  2222566655

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=82.27  E-value=24  Score=28.90  Aligned_cols=43  Identities=16%  Similarity=0.253  Sum_probs=26.7

Q ss_pred             eeeCCEE--EEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCC
Q 036659           22 IRIQVVL--EKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSR   81 (300)
Q Consensus        22 ~~~~Gr~--v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r   81 (300)
                      ..++|..  +.++|||       |......  .    ....++    .+.|++++|+.+.++
T Consensus        40 ~~~~~~~~~~~i~D~~-------g~~~~~~--~----~~~~~~----~~~d~~i~v~d~~~~   84 (165)
T cd04146          40 VTIDGEQVSLEILDTA-------GQQQADT--E----QLERSI----RWADGFVLVYSITDR   84 (165)
T ss_pred             EEECCEEEEEEEEECC-------CCccccc--c----hHHHHH----HhCCEEEEEEECCCH
Confidence            4567764  6799999       6543111  0    122232    367999999999744

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>PLN03118 Rab family protein; Provisional

Probab=82.24  E-value=29  Score=30.23  Aligned_cols=43  Identities=14%  Similarity=0.166  Sum_probs=25.7

Q ss_pred             eeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCC
Q 036659           23 RIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFS   83 (300)
Q Consensus        23 ~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT   83 (300)
                      .++|  ..+.++|||       |.-...       .-...+    ..+.|++|+|+.+..+-|
T Consensus        56 ~~~~~~~~l~l~Dt~-------G~~~~~-------~~~~~~----~~~~d~~vlv~D~~~~~s  100 (211)
T PLN03118         56 TVGGKRLKLTIWDTA-------GQERFR-------TLTSSY----YRNAQGIILVYDVTRRET  100 (211)
T ss_pred             EECCEEEEEEEEECC-------CchhhH-------HHHHHH----HhcCCEEEEEEECCCHHH
Confidence            3455  467899999       632211       111112    347799999999874433

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=82.23  E-value=4  Score=36.55  Aligned_cols=75  Identities=19%  Similarity=0.085  Sum_probs=46.9

Q ss_pred             CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659           25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY  104 (300)
Q Consensus        25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y  104 (300)
                      ++..+.+||||       |.-.   .......|+.+.+...  .|+-++||++...  .+++...+......||     .
T Consensus        82 ~~~D~vlIDT~-------Gr~~---~d~~~~~el~~~~~~~--~~~~~~LVlsa~~--~~~~~~~~~~~~~~~~-----~  142 (196)
T PF00448_consen   82 KGYDLVLIDTA-------GRSP---RDEELLEELKKLLEAL--NPDEVHLVLSATM--GQEDLEQALAFYEAFG-----I  142 (196)
T ss_dssp             TTSSEEEEEE--------SSSS---THHHHHHHHHHHHHHH--SSSEEEEEEEGGG--GGHHHHHHHHHHHHSS-----T
T ss_pred             cCCCEEEEecC-------Ccch---hhHHHHHHHHHHhhhc--CCccceEEEeccc--ChHHHHHHHHHhhccc-----C
Confidence            35679999999       6532   3345556777666544  7889999999862  3444444444444443     4


Q ss_pred             eEEEEEcCCCCCCC
Q 036659          105 MIVVFTGGDELEDN  118 (300)
Q Consensus       105 ~IVlFT~gD~Le~~  118 (300)
                      .=++||.=|+-..-
T Consensus       143 ~~lIlTKlDet~~~  156 (196)
T PF00448_consen  143 DGLILTKLDETARL  156 (196)
T ss_dssp             CEEEEESTTSSSTT
T ss_pred             ceEEEEeecCCCCc
Confidence            55679998887654

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd04111 Rab39 Rab39 subfamily

Probab=81.62  E-value=37  Score=30.00  Aligned_cols=15  Identities=33%  Similarity=0.565  Sum_probs=12.3

Q ss_pred             CCCeEEEEEEeCCCC
Q 036659           67 DGIHAVLVVFSVRSR   81 (300)
Q Consensus        67 pGpHA~LLV~~v~~r   81 (300)
                      .+.|++|+|+.+.++
T Consensus        74 ~~~d~iilv~D~~~~   88 (211)
T cd04111          74 RNSVGVLLVFDITNR   88 (211)
T ss_pred             cCCcEEEEEEECCCH
Confidence            567999999999743

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=81.20  E-value=13  Score=31.20  Aligned_cols=73  Identities=11%  Similarity=0.048  Sum_probs=41.5

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ..+++..+.++|||       |....           ..+...+-.|.|++++|+.+..+-+-  ..+.+.+..++....
T Consensus        54 ~~~~~~~~~l~D~~-------G~~~~-----------~~~~~~~~~~~d~vi~V~D~s~~~~~--~~~~~~l~~~~~~~~  113 (174)
T cd04153          54 IVYKNIRFLMWDIG-------GQESL-----------RSSWNTYYTNTDAVILVIDSTDRERL--PLTKEELYKMLAHED  113 (174)
T ss_pred             EEECCeEEEEEECC-------CCHHH-----------HHHHHHHhhcCCEEEEEEECCCHHHH--HHHHHHHHHHHhchh
Confidence            45677899999999       75321           11122233589999999998633111  122344555554332


Q ss_pred             h--cceEEEEEcCCC
Q 036659          102 F--DYMIVVFTGGDE  114 (300)
Q Consensus       102 ~--~y~IVlFT~gD~  114 (300)
                      .  .-.+|+.+--|.
T Consensus       114 ~~~~p~viv~NK~Dl  128 (174)
T cd04153         114 LRKAVLLVLANKQDL  128 (174)
T ss_pred             hcCCCEEEEEECCCC
Confidence            2  235666666664

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=81.20  E-value=7  Score=42.57  Aligned_cols=80  Identities=15%  Similarity=0.082  Sum_probs=47.1

Q ss_pred             CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHH
Q 036659           11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL   90 (300)
Q Consensus        11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al   90 (300)
                      ++|.+.... ...++|+.++++|||       |..++..       ...+    ...+.+++|||+.+......+....+
T Consensus       322 GIT~~iga~-~v~~~~~~ItfiDTP-------Ghe~F~~-------m~~r----ga~~aDiaILVVdAddGv~~qT~e~i  382 (787)
T PRK05306        322 GITQHIGAY-QVETNGGKITFLDTP-------GHEAFTA-------MRAR----GAQVTDIVVLVVAADDGVMPQTIEAI  382 (787)
T ss_pred             ceeeeccEE-EEEECCEEEEEEECC-------CCccchh-------HHHh----hhhhCCEEEEEEECCCCCCHhHHHHH
Confidence            455544333 346779999999999       7544321       1122    34577899999998755555555555


Q ss_pred             HHHHHHhchhhhcceEEEEEcCCC
Q 036659           91 HSWQTLFGKNVFDYMIVVFTGGDE  114 (300)
Q Consensus        91 ~~lq~lFG~~i~~y~IVlFT~gD~  114 (300)
                      .... .+|    --.||+++--|.
T Consensus       383 ~~a~-~~~----vPiIVviNKiDl  401 (787)
T PRK05306        383 NHAK-AAG----VPIIVAINKIDK  401 (787)
T ss_pred             HHHH-hcC----CcEEEEEECccc
Confidence            4332 222    135666665564

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=81.10  E-value=6.9  Score=38.16  Aligned_cols=80  Identities=14%  Similarity=0.028  Sum_probs=47.6

Q ss_pred             CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659           25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY  104 (300)
Q Consensus        25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y  104 (300)
                      +|..+.++|||       |+... .+.+.+ ..+..-.. ...+.+++|+|+.+....+.++...+..+....|.. -.-
T Consensus       235 ~~~~i~l~DT~-------G~~~~-l~~~li-e~f~~tle-~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~-~~p  303 (351)
T TIGR03156       235 DGGEVLLTDTV-------GFIRD-LPHELV-AAFRATLE-EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAE-DIP  303 (351)
T ss_pred             CCceEEEEecC-------ccccc-CCHHHH-HHHHHHHH-HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccC-CCC
Confidence            68899999999       76431 122222 11222111 133678999999997666666655554444444431 235


Q ss_pred             eEEEEEcCCCC
Q 036659          105 MIVVFTGGDEL  115 (300)
Q Consensus       105 ~IVlFT~gD~L  115 (300)
                      +|+|++--|-.
T Consensus       304 iIlV~NK~Dl~  314 (351)
T TIGR03156       304 QLLVYNKIDLL  314 (351)
T ss_pred             EEEEEEeecCC
Confidence            78888877754

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd01864 Rab19 Rab19 subfamily

Probab=81.07  E-value=24  Score=28.83  Aligned_cols=41  Identities=10%  Similarity=0.131  Sum_probs=25.2

Q ss_pred             eeeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCC
Q 036659           22 IRIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRS   80 (300)
Q Consensus        22 ~~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~   80 (300)
                      ..++|  ..+.++|||       |-       +........    ...+.+++|+|+.+.+
T Consensus        45 ~~~~~~~~~l~i~D~~-------G~-------~~~~~~~~~----~~~~~d~~llv~d~~~   87 (165)
T cd01864          45 LEIEGKRVKLQIWDTA-------GQ-------ERFRTITQS----YYRSANGAIIAYDITR   87 (165)
T ss_pred             EEECCEEEEEEEEECC-------Ch-------HHHHHHHHH----HhccCCEEEEEEECcC
Confidence            34566  367899999       62       111111222    2347799999999974

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01893 Miro1 Miro1 subfamily

Probab=80.92  E-value=30  Score=28.55  Aligned_cols=72  Identities=17%  Similarity=0.107  Sum_probs=39.1

Q ss_pred             CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh-hc
Q 036659           25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV-FD  103 (300)
Q Consensus        25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i-~~  103 (300)
                      .+..+.++|||       |.....   ..    ....    -.+.+++++|+.+.++-|-++.  ...|...+.... -.
T Consensus        45 ~~~~~~i~Dt~-------G~~~~~---~~----~~~~----~~~ad~~ilv~d~~~~~s~~~~--~~~~~~~i~~~~~~~  104 (166)
T cd01893          45 ERVPTTIVDTS-------SRPQDR---AN----LAAE----IRKANVICLVYSVDRPSTLERI--RTKWLPLIRRLGVKV  104 (166)
T ss_pred             CeEEEEEEeCC-------Cchhhh---HH----Hhhh----cccCCEEEEEEECCCHHHHHHH--HHHHHHHHHHhCCCC
Confidence            34678899999       765421   11    1222    2578899999998743332221  112322222111 24


Q ss_pred             ceEEEEEcCCCCC
Q 036659          104 YMIVVFTGGDELE  116 (300)
Q Consensus       104 y~IVlFT~gD~Le  116 (300)
                      .++||.|.-|...
T Consensus       105 pviiv~nK~Dl~~  117 (166)
T cd01893         105 PIILVGNKSDLRD  117 (166)
T ss_pred             CEEEEEEchhccc
Confidence            5777778777544

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=80.63  E-value=11  Score=34.52  Aligned_cols=67  Identities=24%  Similarity=0.270  Sum_probs=42.5

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcce
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYM  105 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~  105 (300)
                      +..+++||||       |.-+..       .+....+    .+.+++|||+.+....+.+.+..+.....   .++  ..
T Consensus        72 ~~~i~iiDTP-------G~~~f~-------~~~~~~l----~~aD~~ilVvD~~~g~~~~t~~~l~~~~~---~~~--p~  128 (222)
T cd01885          72 EYLINLIDSP-------GHVDFS-------SEVTAAL----RLCDGALVVVDAVEGVCVQTETVLRQALK---ERV--KP  128 (222)
T ss_pred             ceEEEEECCC-------CccccH-------HHHHHHH----HhcCeeEEEEECCCCCCHHHHHHHHHHHH---cCC--CE
Confidence            6789999999       765532       2444444    36789999999886777766555544332   222  45


Q ss_pred             EEEEEcCCCC
Q 036659          106 IVVFTGGDEL  115 (300)
Q Consensus       106 IVlFT~gD~L  115 (300)
                      ||+.+--|.+
T Consensus       129 ilviNKiD~~  138 (222)
T cd01885         129 VLVINKIDRL  138 (222)
T ss_pred             EEEEECCCcc
Confidence            6666655643

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd04154 Arl2 Arl2 subfamily

Probab=80.54  E-value=8.5  Score=32.08  Aligned_cols=75  Identities=8%  Similarity=0.040  Sum_probs=43.9

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh-
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN-  100 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~-  100 (300)
                      ..+++..+.++|||       |....       ......+    -.+.|++++|+.+..+-+-+  .....+..++... 
T Consensus        53 ~~~~~~~l~l~D~~-------G~~~~-------~~~~~~~----~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~  112 (173)
T cd04154          53 LEYEGYKLNIWDVG-------GQKTL-------RPYWRNY----FESTDALIWVVDSSDRLRLD--DCKRELKELLQEER  112 (173)
T ss_pred             EEECCEEEEEEECC-------CCHHH-------HHHHHHH----hCCCCEEEEEEECCCHHHHH--HHHHHHHHHHhChh
Confidence            45678899999999       75321       1112222    34889999999987542222  2233445554322 


Q ss_pred             -hhcceEEEEEcCCCCC
Q 036659          101 -VFDYMIVVFTGGDELE  116 (300)
Q Consensus       101 -i~~y~IVlFT~gD~Le  116 (300)
                       .-...|||.|.-|..+
T Consensus       113 ~~~~p~iiv~nK~Dl~~  129 (173)
T cd04154         113 LAGATLLILANKQDLPG  129 (173)
T ss_pred             hcCCCEEEEEECccccc
Confidence             1245677777777543

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=80.38  E-value=29  Score=28.06  Aligned_cols=69  Identities=13%  Similarity=0.028  Sum_probs=36.8

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh-hcc
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV-FDY  104 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i-~~y  104 (300)
                      ...+.+.|||       |...           ........-...+++++|+.+..+.|-+   .+..|...+.... -.-
T Consensus        51 ~~~l~i~Dt~-------G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~---~~~~~~~~~~~~~~~~p  109 (164)
T cd04101          51 TVELFIFDSA-------GQEL-----------YSDMVSNYWESPSVFILVYDVSNKASFE---NCSRWVNKVRTASKHMP  109 (164)
T ss_pred             EEEEEEEECC-------CHHH-----------HHHHHHHHhCCCCEEEEEEECcCHHHHH---HHHHHHHHHHHhCCCCC
Confidence            3688899999       6311           1111122235789999999987443332   2222323322221 235


Q ss_pred             eEEEEEcCCCC
Q 036659          105 MIVVFTGGDEL  115 (300)
Q Consensus       105 ~IVlFT~gD~L  115 (300)
                      +|||.|.-|..
T Consensus       110 ~ilv~nK~Dl~  120 (164)
T cd04101         110 GVLVGNKMDLA  120 (164)
T ss_pred             EEEEEECcccc
Confidence            66777766643

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>COG1084 Predicted GTPase [General function prediction only]

Probab=80.18  E-value=9.2  Score=38.19  Aligned_cols=91  Identities=22%  Similarity=0.293  Sum_probs=56.6

Q ss_pred             eeCCEEEEEEeCCCCcccCcccCCCCCCh-HHHHHHHHHhhccCCCCCeEEEEEEeCC--CCCCHHHHHH-HHHHHHHhc
Q 036659           23 RIQVVLEKVIDTRWVRHAIARLFDFSAGS-KFVGKEIVTCIGMAKDGIHAVLVVFSVR--SRFSQEEEAA-LHSWQTLFG   98 (300)
Q Consensus        23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~-e~v~kEI~~ci~l~~pGpHA~LLV~~v~--~rfT~EE~~a-l~~lq~lFG   98 (300)
                      ..++-++=|||||       ||.|-..+. ..+.+.-.-.+..- .|  +||++|...  +-||-|++.. ++.+...|.
T Consensus       211 e~~~~R~QvIDTP-------GlLDRPl~ErN~IE~qAi~AL~hl-~~--~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~  280 (346)
T COG1084         211 ERGYLRIQVIDTP-------GLLDRPLEERNEIERQAILALRHL-AG--VILFLFDPSETCGYSLEEQISLLEEIKELFK  280 (346)
T ss_pred             ecCCceEEEecCC-------cccCCChHHhcHHHHHHHHHHHHh-cC--eEEEEEcCccccCCCHHHHHHHHHHHHHhcC
Confidence            4557799999999       999965432 23333322233221 23  566666554  4788888654 588999998


Q ss_pred             hhhhcceEEEEEcCCCCCC-CcccHHHhhh
Q 036659           99 KNVFDYMIVVFTGGDELED-NDETLEDYLG  127 (300)
Q Consensus        99 ~~i~~y~IVlFT~gD~Le~-~~~tledyl~  127 (300)
                          .-++||++--|-... .-+.++.++.
T Consensus       281 ----~p~v~V~nK~D~~~~e~~~~~~~~~~  306 (346)
T COG1084         281 ----APIVVVINKIDIADEEKLEEIEASVL  306 (346)
T ss_pred             ----CCeEEEEecccccchhHHHHHHHHHH
Confidence                467899998885522 1134555553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	300
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	2e-30
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	9e-29
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	4e-28
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	2e-21
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	3e-17

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A Length = 260

 Score =  114 bits (286), Expect = 2e-30
 Identities = 39/223 (17%), Positives = 90/223 (40%), Gaps = 40/223 (17%)

Query: 31  VIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL 90
           +IDT         +F +    + + KE+  C  ++  G H +L+V  +  R++ +++ A 
Sbjct: 75  IIDT-------PDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAA 126

Query: 91  HSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFL 150
              + +FG++   + IV+FT  ++L     +L DY+     K L                
Sbjct: 127 QRVKEIFGEDAMGHTIVLFTHKEDLNG--GSLMDYMHDSDNKALSK-------------- 170

Query: 151 NDFLLPWGIGRRGILQLCDNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTD 210
                        ++  C  R   F+N+ +   +  +Q+ +L+  +  + ++ +G  YT+
Sbjct: 171 -------------LVAACGGRICAFNNRAEGSNQD-DQVKELMDCIEDLLMEKNGDHYTN 216

Query: 211 DIFVELKLLFLPFVNDLE--KKVVPNMLKETSRLEQQLTEEQA 251
            ++  ++      V   E  K+   +++K            +A
Sbjct: 217 GLYSLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAEA 259

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239

 Score =  109 bits (273), Expect = 9e-29
 Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 39/187 (20%)

Query: 31  VIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL 90
           V+DT         +FD    +    KEI+ CI +   G HA+L+V  +  R+++EE  A 
Sbjct: 82  VVDT-------PGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKAT 133

Query: 91  HSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFL 150
                +FG+    +MI++FT  D+L   D  L DYL RE P+ ++               
Sbjct: 134 EKILKMFGERARSFMILIFTRKDDLG--DTNLHDYL-REAPEDIQD-------------- 176

Query: 151 NDFLLPWGIGRRGILQLCDNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTD 210
                        ++ +  +R    +NK     +   Q  +LL L+  V  +N    YT+
Sbjct: 177 -------------LMDIFGDRYCALNNKATGAEQEA-QRAQLLGLIQRVVRENKEGCYTN 222

Query: 211 DIFVELK 217
            ++   +
Sbjct: 223 RMYQRAE 229

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score = 90.7 bits (225), Expect = 2e-21
 Identities = 26/186 (13%), Positives = 55/186 (29%), Gaps = 16/186 (8%)

Query: 30  KVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAA 89
            +IDT         L +    +    + I   +      +   +    V     + ++  
Sbjct: 87  NIIDT-------PGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVY-AVDELDKQV 138

Query: 90  LHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHF 149
           + +    FGK ++   ++V T       ++ + E +  +     LK+ R      +    
Sbjct: 139 VIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGS--KMRKQE 196

Query: 150 LNDFLLPWGIGRRGILQLCDNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYT 209
             D  +        +      RC   D   K        I  L+  +  VA       + 
Sbjct: 197 FEDSAIA------VVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAITDVATNQRKAIHV 250

Query: 210 DDIFVE 215
           D   +E
Sbjct: 251 DAAALE 256

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score = 79.2 bits (195), Expect = 3e-17
 Identities = 29/191 (15%), Positives = 56/191 (29%), Gaps = 37/191 (19%)

Query: 30  KVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSV-RSRFSQEEEA 88
            +IDT         L +    +      I + +      I  +L V  +   R    ++ 
Sbjct: 90  NIIDT-------PGLIEGGYINDMALNIIKSFL--LDKTIDVLLYVDRLDAYRVDNLDKL 140

Query: 89  ALHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLH 148
              +    FGK +++  IV  T       +    +++  +                 LL 
Sbjct: 141 VAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEA-------------LLQ 187

Query: 149 FLNDFLLPWGIGRRGILQLCDNRCVLFDN----KTKDEAKR-----TEQIWKLLSLVNSV 199
            +       G   +   Q  D   VL +N       D  ++        I  L+  +  V
Sbjct: 188 VVRS-----GASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEV 242

Query: 200 AVQNDGQPYTD 210
           A+      + D
Sbjct: 243 ALNKSESIFVD 253

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	300
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.97
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.95
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.86
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.35
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.26
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	98.07
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	98.0
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	97.89
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	97.61
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	97.57
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	97.41
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	97.18
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	97.1
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	97.04
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	96.97
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	96.96
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.86
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	96.77
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	96.77
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	96.61
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	96.6
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	96.59
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	96.52
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	96.32
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.19
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.07
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	96.06
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	95.91
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	95.87
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	95.76
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	95.45
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	95.4
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	95.27
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	95.18
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	95.13
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	95.12
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	95.11
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	95.09
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	94.93
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	94.93
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	94.76
1wb1_A	482	Translation elongation factor SELB; selenocysteine	94.7
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	94.68
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	94.58
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	94.54
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	94.53
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	94.52
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	94.51
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	94.4
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	94.36
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	94.33
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	94.3
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	94.28
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	94.19
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	94.12
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	94.06
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	94.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	94.0
2fh5_B	214	SR-beta, signal recognition particle receptor beta	93.93
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	93.87
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	93.87
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	93.83
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	93.78
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	93.75
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	93.75
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	93.66
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	93.63
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	93.62
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	93.51
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	93.47
2ged_A	193	SR-beta, signal recognition particle receptor beta	93.46
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	93.42
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	93.41
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	93.31
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	93.28
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	93.25
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	93.25
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	93.23
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	93.22
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	93.21
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	93.19
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	93.1
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	93.01
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	92.95
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	92.88
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	92.84
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	92.74
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	92.72
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	92.7
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	92.63
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	92.59
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	92.56
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	92.42
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	92.28
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	92.13
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	91.97
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	91.74
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	91.67
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	91.6
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	91.54
2wji_A	165	Ferrous iron transport protein B homolog; membrane	91.47
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	91.33
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	91.26
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	91.2
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	91.17
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	91.17
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	91.09
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	91.06
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	90.96
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	90.87
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	90.83
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	90.8
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	90.44
3llu_A	196	RAS-related GTP-binding protein C; structural geno	90.36
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	90.25
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	90.2
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	90.17
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	90.07
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	89.75
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	89.75
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	89.5
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	89.2
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	89.15
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	89.08
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	89.05
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	89.02
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	88.47
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	88.42
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	88.29
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	88.21
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	88.17
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	88.12
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	88.02
1nrj_B	218	SR-beta, signal recognition particle receptor beta	87.99
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	87.51
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	87.44
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	87.42
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	87.12
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	87.03
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	86.66
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	86.19
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	86.18
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	86.16
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	86.02
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	85.79
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	85.47
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	84.48
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	84.16
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	83.61
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	83.39
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	82.87
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	82.25
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	82.13
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	81.43
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	81.25
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	80.9
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	80.8
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	80.78
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	80.34
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	80.19

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.95  E-value=2.2e-28  Score=212.11  Aligned_cols=174  Identities=26%  Similarity=0.438  Sum_probs=128.9

Q ss_pred             CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHH
Q 036659           11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL   90 (300)
Q Consensus        11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al   90 (300)
                      ++|..|... ...++|+.+.|||||       |++|+..+.+.+.+++.+|+..+.||+|++|+|+++. +++.++...+
T Consensus        63 ~~t~~~~~~-~~~~~~~~i~liDTp-------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l  133 (239)
T 3lxx_A           63 SITKKCEKR-SSSWKETELVVVDTP-------GIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLG-RYTEEEHKAT  133 (239)
T ss_dssp             --CCSCEEE-EEEETTEEEEEEECC-------SCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETT-CCSSHHHHHH
T ss_pred             ceeeeEEEE-EEEeCCceEEEEECC-------CccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCC-CCCHHHHHHH
Confidence            678888776 467899999999999       9999988888899999999999999999999999997 9999999999


Q ss_pred             HHHHHHhchhhhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcCC
Q 036659           91 HSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDN  170 (300)
Q Consensus        91 ~~lq~lFG~~i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~  170 (300)
                      ..+...||.....++|||+|..|.+.+  .++++|+.. .+..|++                           +++.|++
T Consensus       134 ~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~i~~-~~~~l~~---------------------------l~~~~~~  183 (239)
T 3lxx_A          134 EKILKMFGERARSFMILIFTRKDDLGD--TNLHDYLRE-APEDIQD---------------------------LMDIFGD  183 (239)
T ss_dssp             HHHHHHHHHHHGGGEEEEEECGGGC---------------CHHHHH---------------------------HHHHHSS
T ss_pred             HHHHHHhhhhccceEEEEEeCCccCCc--ccHHHHHHh-chHHHHH---------------------------HHHHcCC
Confidence            999999999999999999999998876  589999987 4667999                           9999999


Q ss_pred             eEEEEeCCCcchhhchHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhhhhH
Q 036659          171 RCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIFVELKLLFLPFV  224 (300)
Q Consensus       171 R~~~FnNk~~de~~~~~Qv~eLL~~Ve~mv~~NgG~~yt~e~f~e~e~~~~~~v  224 (300)
                      ||++|+|++++ +++..||.+||.+|+.|+.+|+|.||+++||.++++.+++..
T Consensus       184 ~~~~~~~~~~~-~~~~~~v~~ll~~i~~~~~~~~g~~~~~~~~~~~e~~~~~~~  236 (239)
T 3lxx_A          184 RYCALNNKATG-AEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAEEEIQKQT  236 (239)
T ss_dssp             SEEECCTTCCH-HHHHHHHHHHHHHHHHHHHHCTTSCC----------------
T ss_pred             EEEEEECCCCc-cccHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHH
Confidence            99999999765 356789999999999999999999999999999998776653

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.86  E-value=2.5e-20  Score=163.04  Aligned_cols=170  Identities=21%  Similarity=0.416  Sum_probs=145.6

Q ss_pred             CCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHH
Q 036659           10 FGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAA   89 (300)
Q Consensus        10 ~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~a   89 (300)
                      .++|..|... +..++|..+++||||       |++++....+...++|.+|+..+.+++|++|+|+.+. +|+..+...
T Consensus        55 ~~~t~~~~~~-~~~~~~~~i~iiDTp-------G~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~-~~~~~~~~~  125 (260)
T 2xtp_A           55 QTLTKTCSKS-QGSWGNREIVIIDTP-------DMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLG-RYTSQDQQA  125 (260)
T ss_dssp             CCCCCSCEEE-EEEETTEEEEEEECC-------GGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETT-CCCHHHHHH
T ss_pred             CceeeeeEEE-EEEeCCCEEEEEECc-------CCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCC-CCCHHHHHH
Confidence            3477777765 467899999999999       9998887778888899999998899999999999998 799999999


Q ss_pred             HHHHHHHhchhhhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcC
Q 036659           90 LHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCD  169 (300)
Q Consensus        90 l~~lq~lFG~~i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~  169 (300)
                      +..+..+||..+...+|||||++.++.+  ..+.+|+....+..++.                           +++.|+
T Consensus       126 ~~~l~~~~~~~~~~~~i~vv~nK~Dl~~--~~~~~~i~~~~~~~~~~---------------------------~~~~~~  176 (260)
T 2xtp_A          126 AQRVKEIFGEDAMGHTIVLFTHKEDLNG--GSLMDYMHDSDNKALSK---------------------------LVAACG  176 (260)
T ss_dssp             HHHHHHHHCGGGGGGEEEEEECGGGGTT--CCHHHHHHHCCCHHHHH---------------------------HHHHTT
T ss_pred             HHHHHHHhCchhhccEEEEEEcccccCC--ccHHHHHHhcchHHHHH---------------------------HHHHhC
Confidence            9999999999988999999998877765  47999998755566888                           899999


Q ss_pred             CeEEEEeCCCcchhhchHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHH
Q 036659          170 NRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDIFVELKL  218 (300)
Q Consensus       170 ~R~~~FnNk~~de~~~~~Qv~eLL~~Ve~mv~~NgG~~yt~e~f~e~e~  218 (300)
                      .|++.|++- .-.++...+|.+|+..|..++..++|.+|+++++.+..+
T Consensus       177 ~~~~~~~~~-~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~  224 (260)
T 2xtp_A          177 GRICAFNNR-AEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSLIQR  224 (260)
T ss_dssp             TCEEECCTT-CCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHC--
T ss_pred             CeEEEecCc-ccccccHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHH
Confidence            999989883 233556789999999999999999989999998877765

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.35  E-value=1.7e-12  Score=115.02  Aligned_cols=153  Identities=14%  Similarity=0.132  Sum_probs=114.3

Q ss_pred             CCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCC-CCCHHHHHHH
Q 036659           12 APKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRS-RFSQEEEAAL   90 (300)
Q Consensus        12 vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~-rfT~EE~~al   90 (300)
                      .|..+... ...++|+.+++||||       |+.++....+...+.|.+|+  +.+++|+||+|++++. +|+..+...+
T Consensus        70 ~t~~~~~~-~~~~~~~~l~liDTp-------G~~~~~~~~~~~~~~i~~~l--~~~~~~~il~V~~~d~~~~~~~~~~~~  139 (262)
T 3def_A           70 EGLRPVMV-SRTMGGFTINIIDTP-------GLVEAGYVNHQALELIKGFL--VNRTIDVLLYVDRLDVYAVDELDKQVV  139 (262)
T ss_dssp             -CCCCEEE-EEEETTEEEEEEECC-------CSEETTEECHHHHHHHHHHT--TTCEECEEEEEEESSCSCCCHHHHHHH
T ss_pred             cceeeEEE-EEEECCeeEEEEECC-------CCCCcccchHHHHHHHHHHH--hcCCCCEEEEEEcCCCCCCCHHHHHHH
Confidence            34444433 346889999999999       88877766677778888887  5789999999998864 7999999999


Q ss_pred             HHHHHHhchhhhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcC-
Q 036659           91 HSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCD-  169 (300)
Q Consensus        91 ~~lq~lFG~~i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~-  169 (300)
                      +.++..||.++++++|||+|..|.....+.++++|+.. ....|++                           ++..|. 
T Consensus       140 ~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~-~~~~l~~---------------------------~i~~~~~  191 (262)
T 3def_A          140 IAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK-RSDSLLK---------------------------TIRAGSK  191 (262)
T ss_dssp             HHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH-HHHHHHH---------------------------HHHHHHT
T ss_pred             HHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh-hhHHHHH---------------------------HHHHHhC
Confidence            99999999999999999999998654445799999976 3456777                           665554 


Q ss_pred             ----------CeEEEEeCCCcchh---------hchHHHHHHHHHHHHHHHH
Q 036659          170 ----------NRCVLFDNKTKDEA---------KRTEQIWKLLSLVNSVAVQ  202 (300)
Q Consensus       170 ----------~R~~~FnNk~~de~---------~~~~Qv~eLL~~Ve~mv~~  202 (300)
                                ..+.+++|...-..         .....+..||+.|..|+..
T Consensus       192 ~~~~~~~~~~~pv~~ve~~~~~~~n~~g~~~lp~~~~w~~~~~~~~~~~~~~  243 (262)
T 3def_A          192 MRKQEFEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAITDVATN  243 (262)
T ss_dssp             CCHHHHHHHCCEEEECCCCTTCCBCTTSCBBCTTSCBSCC-CHHHHHHHHTS
T ss_pred             ccccccccccCCEEEEeCCCCCCCCCCCCeECCCCCeeHHHHHHHHHHHHhC
Confidence                      55666677533111         0122567788888888864

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.26  E-value=3e-11  Score=107.16  Aligned_cols=177  Identities=16%  Similarity=0.183  Sum_probs=111.9

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCC-CCCHHHHHHHHHHHHHhchh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRS-RFSQEEEAALHSWQTLFGKN  100 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~-rfT~EE~~al~~lq~lFG~~  100 (300)
                      ...+|..++|||||       |+.++....+...+.|.+++  ..+++|++|+|++++. +|+..+...+..+...||.+
T Consensus        82 ~~~~~~~l~iiDTp-------G~~~~~~~~~~~~~~i~~~~--~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~  152 (270)
T 1h65_A           82 RSRAGFTLNIIDTP-------GLIEGGYINDMALNIIKSFL--LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKG  152 (270)
T ss_dssp             EEETTEEEEEEECC-------CSEETTEECHHHHHHHHHHT--TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGG
T ss_pred             EeeCCeEEEEEECC-------CCCCCccchHHHHHHHHHHh--hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcc
Confidence            45689999999999       88776655555666777764  4679999999998864 79999999999999999999


Q ss_pred             hhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcCCeEEEEeCCCc
Q 036659          101 VFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTK  180 (300)
Q Consensus       101 i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~R~~~FnNk~~  180 (300)
                      ++.++|||+|..|-....+.++++|+.. ....|+.. ++--..+.-.+. .--+|.      .+-...++|..-.+..+
T Consensus       153 ~~~~iivV~nK~Dl~~~~~~~~~~~~~~-~~~~l~~~-~~~~~~~~~~~~-~~~~p~------~~v~~~~~~~~~~~~~~  223 (270)
T 1h65_A          153 IWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQV-VRSGASLKKDAQ-ASDIPV------VLIENSGRCNKNDSDEK  223 (270)
T ss_dssp             GGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHHH-HHHHTTCCTTSG-GGCCCE------EECCCCTTCCBCTTSCB
T ss_pred             cccCEEEEEECcccCCcCCCCHHHHHHH-HHHHHHHH-HHHhhhhhhhhh-hccCCE------EEEeCCCcccccCCCce
Confidence            9999999999999655444589998865 23445440 000000000000 000010      11112233322111111


Q ss_pred             chhhchHHHHHHHHHHHHHHHHcCCCCCCh-HHHHHH
Q 036659          181 DEAKRTEQIWKLLSLVNSVAVQNDGQPYTD-DIFVEL  216 (300)
Q Consensus       181 de~~~~~Qv~eLL~~Ve~mv~~NgG~~yt~-e~f~e~  216 (300)
                      --.....+...||..+..++..++...+.| .++...
T Consensus       224 v~~~~~~w~~~Ll~~l~~~~~~~~~~l~~d~~~~~~~  260 (270)
T 1h65_A          224 VLPNGIAWIPHLVQTITEVALNKSESIFVDKNLIDKL  260 (270)
T ss_dssp             BCTTSCBHHHHHHHHHHHHHTSSSCCEECCHHHHHHH
T ss_pred             ECCCCCCcHHHHHHHHHHHHhcCCCceecCHHHhcCC
Confidence            001123578899999999999998886555 555543

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=98.07  E-value=4.2e-05  Score=63.81  Aligned_cols=128  Identities=9%  Similarity=0.053  Sum_probs=79.3

Q ss_pred             eCCEEEEEEeCCCCcccCcccCCCCCChHH--HHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKF--VGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~--v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      .++..+.++|||       |+.++......  .-..+........+++|++|+|+....+++..+...+..+..     .
T Consensus        76 ~~~~~~~l~Dtp-------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~-----~  143 (223)
T 4dhe_A           76 AAEPVAHLVDLP-------GYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP-----T  143 (223)
T ss_dssp             TTSCSEEEEECC-------CCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG-----G
T ss_pred             CCCCcEEEEcCC-------CCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh-----c
Confidence            457899999999       76554433221  112233222234678999999999988899888887777655     2


Q ss_pred             hcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhh-------cCCeEEE
Q 036659          102 FDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQL-------CDNRCVL  174 (300)
Q Consensus       102 ~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~-------C~~R~~~  174 (300)
                      -..+|||+|.-|.+..  ..++..+..     +++                           .+..       .+..++.
T Consensus       144 ~~p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~---------------------------~l~~~~~~~~~~~~~~~~  189 (223)
T 4dhe_A          144 GKPIHSLLTKCDKLTR--QESINALRA-----TQK---------------------------SLDAYRDAGYAGKLTVQL  189 (223)
T ss_dssp             CCCEEEEEECGGGSCH--HHHHHHHHH-----HHH---------------------------HHHHHHHHTCCSCEEEEE
T ss_pred             CCCEEEEEeccccCCh--hhHHHHHHH-----HHH---------------------------HHHhhhhcccCCCCeEEE
Confidence            2468899998887654  233333322     222                           2222       3445666


Q ss_pred             EeCCCcchhhchHHHHHHHHHHHHHHHHc
Q 036659          175 FDNKTKDEAKRTEQIWKLLSLVNSVAVQN  203 (300)
Q Consensus       175 FnNk~~de~~~~~Qv~eLL~~Ve~mv~~N  203 (300)
                      .+.++      ...|.+|++.|.+++...
T Consensus       190 ~SA~~------g~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          190 FSALK------RTGLDDAHALIESWLRPA  212 (223)
T ss_dssp             EBTTT------TBSHHHHHHHHHHHHC--
T ss_pred             eecCC------CcCHHHHHHHHHHhcCcc
Confidence            66554      247889999988877544

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=98.00  E-value=2.5e-05  Score=71.15  Aligned_cols=135  Identities=11%  Similarity=0.147  Sum_probs=88.8

Q ss_pred             eeC-CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHH-HHHHHHHhchh
Q 036659           23 RIQ-VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAA-LHSWQTLFGKN  100 (300)
Q Consensus        23 ~~~-Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~a-l~~lq~lFG~~  100 (300)
                      ..+ +..+++||||       |+.++. ....+.+.+..+...+-+++|++|+|+.+...++.++... ++.+..     
T Consensus        54 ~~~~~~~i~lvDTP-------G~~~~~-~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-----  120 (308)
T 3iev_A           54 NIPNEAQIIFLDTP-------GIYEPK-KSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-----  120 (308)
T ss_dssp             EETTTEEEEEEECC-------CCCCCC-TTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-----
T ss_pred             ecCCCCeEEEEECc-------CCCccc-cchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-----
Confidence            456 8999999999       988765 3345666777766666679999999999987899888776 555544     


Q ss_pred             hhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcCCeEEEEeCCCc
Q 036659          101 VFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTK  180 (300)
Q Consensus       101 i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~R~~~FnNk~~  180 (300)
                      .-..+|+|++--|...+. ..+.+.+..                                   +-+.+++...+|--.+.
T Consensus       121 ~~~pvilV~NK~Dl~~~~-~~~~~~~~~-----------------------------------l~~~~~~~~~i~~vSA~  164 (308)
T 3iev_A          121 LNKPVIVVINKIDKIGPA-KNVLPLIDE-----------------------------------IHKKHPELTEIVPISAL  164 (308)
T ss_dssp             GCCCEEEEEECGGGSSSG-GGGHHHHHH-----------------------------------HHHHCTTCCCEEECBTT
T ss_pred             cCCCEEEEEECccCCCCH-HHHHHHHHH-----------------------------------HHHhccCCCeEEEEeCC
Confidence            234688888888866332 344444432                                   33334322223333322


Q ss_pred             chhhchHHHHHHHHHHHHHHHHcCCCCCChH
Q 036659          181 DEAKRTEQIWKLLSLVNSVAVQNDGQPYTDD  211 (300)
Q Consensus       181 de~~~~~Qv~eLL~~Ve~mv~~NgG~~yt~e  211 (300)
                      .    ...|.+|++.|...+.+. ..+|..+
T Consensus       165 ~----g~gv~~L~~~l~~~l~~~-~~~~~~~  190 (308)
T 3iev_A          165 K----GANLDELVKTILKYLPEG-EPLFPED  190 (308)
T ss_dssp             T----TBSHHHHHHHHHHHSCBC-CCSSCTT
T ss_pred             C----CCCHHHHHHHHHHhCccC-CCCCCcc
Confidence            2    358999999998888643 4456543

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=97.89  E-value=0.00019  Score=57.67  Aligned_cols=125  Identities=14%  Similarity=0.066  Sum_probs=76.5

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCCChH--HHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSAGSK--FVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD  103 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~~~e--~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~  103 (300)
                      +..+.++|||       |+.+...+..  ..-..+.....-..++++++++|+.....++..+...+..+...     -.
T Consensus        67 ~~~~~i~Dt~-------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~  134 (195)
T 3pqc_A           67 NSKYYFVDLP-------GYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NI  134 (195)
T ss_dssp             TTTEEEEECC-------CBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TC
T ss_pred             CCcEEEEECC-------CCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CC
Confidence            4568899999       7544333221  11223333333345789999999999878888888777776654     34


Q ss_pred             ceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcC-CeEEEEeCCCcch
Q 036659          104 YMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCD-NRCVLFDNKTKDE  182 (300)
Q Consensus       104 y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~-~R~~~FnNk~~de  182 (300)
                      ..|||.|.-|.+..  ...+..+..     ++.                           ++...+ ..|+....++   
T Consensus       135 p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~---------------------------~~~~~~~~~~~~~Sa~~---  177 (195)
T 3pqc_A          135 PFTIVLTKMDKVKM--SERAKKLEE-----HRK---------------------------VFSKYGEYTIIPTSSVT---  177 (195)
T ss_dssp             CEEEEEECGGGSCG--GGHHHHHHH-----HHH---------------------------HHHSSCCSCEEECCTTT---
T ss_pred             CEEEEEEChhcCCh--HHHHHHHHH-----HHH---------------------------HHhhcCCCceEEEecCC---
Confidence            67888898886644  234444322     222                           333322 2455555443   


Q ss_pred             hhchHHHHHHHHHHHHHHHH
Q 036659          183 AKRTEQIWKLLSLVNSVAVQ  202 (300)
Q Consensus       183 ~~~~~Qv~eLL~~Ve~mv~~  202 (300)
                         ...|.+|++.|.+++.+
T Consensus       178 ---~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          178 ---GEGISELLDLISTLLKE  194 (195)
T ss_dssp             ---CTTHHHHHHHHHHHHC-
T ss_pred             ---CCCHHHHHHHHHHHhhc
Confidence               24788999988887754

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=97.61  E-value=0.0012  Score=53.37  Aligned_cols=79  Identities=11%  Similarity=0.032  Sum_probs=52.1

Q ss_pred             EEEEEEeCCCCcccCcccCCCCCChHH--HHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659           27 VLEKVIDTRWVRHAIARLFDFSAGSKF--VGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY  104 (300)
Q Consensus        27 r~v~VIDTP~w~~~~~glfd~~~~~e~--v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y  104 (300)
                      ..+.++|||       |+.+...+.+.  .-..+........+++|++++|+.+..+++..+...+..+..     .-..
T Consensus        69 ~~~~l~Dt~-------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~p  136 (195)
T 1svi_A           69 DELHFVDVP-------GYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY-----YGIP  136 (195)
T ss_dssp             TTEEEEECC-------CBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCC
T ss_pred             CcEEEEECC-------CCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCC
Confidence            368999999       87665544321  111222222223467899999999988899988776666654     2235


Q ss_pred             eEEEEEcCCCCCC
Q 036659          105 MIVVFTGGDELED  117 (300)
Q Consensus       105 ~IVlFT~gD~Le~  117 (300)
                      .+||+|.-|....
T Consensus       137 ~i~v~nK~Dl~~~  149 (195)
T 1svi_A          137 VIVIATKADKIPK  149 (195)
T ss_dssp             EEEEEECGGGSCG
T ss_pred             EEEEEECcccCCh
Confidence            7888898886654

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=97.57  E-value=5.5e-05  Score=67.16  Aligned_cols=91  Identities=12%  Similarity=0.149  Sum_probs=54.9

Q ss_pred             ccCCCCCeEEEEEEeCCC-CCCHHHHHHHHHHHHHhchhhhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCC
Q 036659           63 GMAKDGIHAVLVVFSVRS-RFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKV  141 (300)
Q Consensus        63 ~l~~pGpHA~LLV~~v~~-rfT~EE~~al~~lq~lFG~~i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~  141 (300)
                      .+..+++|++|+|+.... .+++.+...++.+..      ...+|+|+|..|.+..  ..+..+...     +++     
T Consensus       110 ~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~~~--~e~~~~~~~-----i~~-----  171 (274)
T 3t5d_A          110 QMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLTP--EECQQFKKQ-----IMK-----  171 (274)
T ss_dssp             SCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGSCH--HHHHHHHHH-----HHH-----
T ss_pred             cccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCCCH--HHHHHHHHH-----HHH-----
Confidence            456678999999996543 689999887777654      4578999999997754  345544432     333     


Q ss_pred             CchhhhhhcccccccccccchhhhhhcCCeEEEEeCCCcchhhchHHHHHHHHHHHHH
Q 036659          142 PYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTKDEAKRTEQIWKLLSLVNSV  199 (300)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~R~~~FnNk~~de~~~~~Qv~eLL~~Ve~m  199 (300)
                                            .+..++-+++.|..++      ...+.+|++.+.++
T Consensus       172 ----------------------~l~~~~i~v~~~sa~~------~~~~~~l~~~l~~~  201 (274)
T 3t5d_A          172 ----------------------EIQEHKIKIYEFPETD------DEEENKLVKKIKDR  201 (274)
T ss_dssp             ----------------------HHHHTTCCCCCC-----------------CHHHHHT
T ss_pred             ----------------------HHHHcCCeEEcCCCCC------ChhHHHHHHHHhcC
Confidence                                  4566666776666543      24566677666554

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=97.41  E-value=0.012  Score=46.42  Aligned_cols=132  Identities=14%  Similarity=0.085  Sum_probs=76.4

Q ss_pred             CCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHH
Q 036659           12 APKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALH   91 (300)
Q Consensus        12 vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~   91 (300)
                      +|...... +..++|..+.++|||       |.-+....           ......+.|++|+|+.+....+.+....+.
T Consensus        41 ~~~~~~~~-~~~~~~~~~~l~Dt~-------G~~~~~~~-----------~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~  101 (178)
T 2lkc_A           41 ITQHIGAY-QVTVNDKKITFLDTP-------GHEAFTTM-----------RARGAQVTDIVILVVAADDGVMPQTVEAIN  101 (178)
T ss_dssp             SSTTCCCC-EEEETTEEEEESCCC-------SSSSSSCS-----------CCSSCCCCCEEEEEEETTCCCCHHHHHHHH
T ss_pred             eeEeeeEE-EEEeCCceEEEEECC-------CCHHHHHH-----------HHHHHhhCCEEEEEEECCCCCcHHHHHHHH
Confidence            34444333 356789999999999       64333211           123457899999999998777776665554


Q ss_pred             HHHHHhchhhhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcCCe
Q 036659           92 SWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNR  171 (300)
Q Consensus        92 ~lq~lFG~~i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~R  171 (300)
                      .+   ...+  .-.+||+|--|-...+...+.+++..     +..                           +...+++.
T Consensus       102 ~~---~~~~--~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~---------------------------~~~~~~~~  144 (178)
T 2lkc_A          102 HA---KAAN--VPIIVAINKMDKPEANPDRVMQELME-----YNL---------------------------VPEEWGGD  144 (178)
T ss_dssp             HH---GGGS--CCEEEEEETTTSSCSCHHHHHHHHTT-----TTC---------------------------CBTTTTSS
T ss_pred             HH---HhCC--CCEEEEEECccCCcCCHHHHHHHHHh-----cCc---------------------------ChhHcCCc
Confidence            33   2222  34788888878554321233334422     111                           22334443


Q ss_pred             EEEEeCCCcchhhchHHHHHHHHHHHHHHHHc
Q 036659          172 CVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQN  203 (300)
Q Consensus       172 ~~~FnNk~~de~~~~~Qv~eLL~~Ve~mv~~N  203 (300)
                      +.+|--.++.    ...|.+|++.+-..+...
T Consensus       145 ~~~~~~Sa~~----~~gv~~l~~~l~~~~~~~  172 (178)
T 2lkc_A          145 TIFCKLSAKT----KEGLDHLLEMILLVSEME  172 (178)
T ss_dssp             EEEEECCSSS----SHHHHHHHHHHHHHHHHT
T ss_pred             ccEEEEecCC----CCCHHHHHHHHHHhhhhh
Confidence            4444444333    257888988887766543

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=97.18  E-value=0.0026  Score=58.08  Aligned_cols=81  Identities=19%  Similarity=0.099  Sum_probs=57.8

Q ss_pred             eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh
Q 036659           23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF  102 (300)
Q Consensus        23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~  102 (300)
                      ..++..++++|||       |++++..   .+.+.+......+-.+.|++|+|+.+..+++..+...++.+...++   -
T Consensus        51 ~~~~~~l~l~DTp-------G~~~~~~---~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~---~  117 (301)
T 1wf3_A           51 TEGRRQIVFVDTP-------GLHKPMD---ALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVG---K  117 (301)
T ss_dssp             EETTEEEEEEECC-------CCCCCCS---HHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTT---T
T ss_pred             EeCCcEEEEecCc-------cccchhh---HHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcC---C
Confidence            3568899999999       9887542   4444555555556679999999999987899988777776665431   1


Q ss_pred             cceEEEEEcCCCCC
Q 036659          103 DYMIVVFTGGDELE  116 (300)
Q Consensus       103 ~y~IVlFT~gD~Le  116 (300)
                      ...|+|.+--|...
T Consensus       118 ~p~ilV~NK~Dl~~  131 (301)
T 1wf3_A          118 VPILLVGNKLDAAK  131 (301)
T ss_dssp             SCEEEEEECGGGCS
T ss_pred             CCEEEEEECcccCC
Confidence            34667777666543

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=97.10  E-value=0.0014  Score=58.20  Aligned_cols=90  Identities=13%  Similarity=0.117  Sum_probs=49.0

Q ss_pred             CCEEEEEEeCCCCcccCcccCCCCCC--hHHHHHHHHHhhccCCCCCeEEEEEEeC-CCCCCHHHH-HHHHHHHHHhchh
Q 036659           25 QVVLEKVIDTRWVRHAIARLFDFSAG--SKFVGKEIVTCIGMAKDGIHAVLVVFSV-RSRFSQEEE-AALHSWQTLFGKN  100 (300)
Q Consensus        25 ~Gr~v~VIDTP~w~~~~~glfd~~~~--~e~v~kEI~~ci~l~~pGpHA~LLV~~v-~~rfT~EE~-~al~~lq~lFG~~  100 (300)
                      ++..+++||||       |+.+....  ++.+.+.+......+-.++|++++|+.. ...++..+. ..+..+.    . 
T Consensus       129 ~~~~~~lvDTp-------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~----~-  196 (315)
T 1jwy_B          129 HVVNLTLVDLP-------GITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD----P-  196 (315)
T ss_dssp             TSCSEEEEECC-------CCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC----S-
T ss_pred             CCCCcEEEECC-------CCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC----C-
Confidence            45689999999       88753211  1122222333333233478888888876 445665443 4444332    1 


Q ss_pred             hhcceEEEEEcCCCCCCCcccHHHhhh
Q 036659          101 VFDYMIVVFTGGDELEDNDETLEDYLG  127 (300)
Q Consensus       101 i~~y~IVlFT~gD~Le~~~~tledyl~  127 (300)
                      .-..+|+|+|--|.+... ..+.+++.
T Consensus       197 ~~~~~i~v~NK~Dl~~~~-~~~~~~~~  222 (315)
T 1jwy_B          197 EGKRTIGVITKLDLMDKG-TDAMEVLT  222 (315)
T ss_dssp             SCSSEEEEEECTTSSCSS-CCCHHHHT
T ss_pred             CCCcEEEEEcCcccCCcc-hHHHHHHh
Confidence            235789999999977543 22344443

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=97.04  E-value=0.0024  Score=54.10  Aligned_cols=81  Identities=15%  Similarity=0.171  Sum_probs=46.5

Q ss_pred             eeCCEEEEEEeCCCCcccCcccCCCCCChHH-H-HHHHHHhhccCCCCCeEEEEEEeCCCCCCH---HHHHHHHHHHHHh
Q 036659           23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKF-V-GKEIVTCIGMAKDGIHAVLVVFSVRSRFSQ---EEEAALHSWQTLF   97 (300)
Q Consensus        23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~-v-~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~---EE~~al~~lq~lF   97 (300)
                      ..++..+.++|||       |..+.+..... . ..-+..    ...+.+++|+|+.+..+.|-   .+...+..+...+
T Consensus        72 ~~~~~~~~l~Dtp-------G~~~~~~~~~~~~~~~~~~~----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~  140 (228)
T 2qu8_A           72 DHKLNKYQIIDTP-------GLLDRAFENRNTIEMTTITA----LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF  140 (228)
T ss_dssp             EETTEEEEEEECT-------TTTTSCGGGCCHHHHHHHHH----HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC
T ss_pred             ecCCCeEEEEECC-------CCcCcccchhhhHHHHHHHH----hhccccEEEEEEecccccCcchHHHHHHHHHHHHhh
Confidence            4567899999999       87664322111 1 111222    13577999999999866442   2233344443322


Q ss_pred             chhhhcceEEEEEcCCCCCC
Q 036659           98 GKNVFDYMIVVFTGGDELED  117 (300)
Q Consensus        98 G~~i~~y~IVlFT~gD~Le~  117 (300)
                      +   -..+|||+|--|....
T Consensus       141 ~---~~piilv~nK~Dl~~~  157 (228)
T 2qu8_A          141 S---NKSIVIGFNKIDKCNM  157 (228)
T ss_dssp             ----CCCEEEEEECGGGCC-
T ss_pred             c---CCcEEEEEeCcccCCc
Confidence            1   2357888888786543

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=96.97  E-value=0.0014  Score=60.31  Aligned_cols=80  Identities=18%  Similarity=0.144  Sum_probs=49.8

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCC--ChHHHHHHHHHhhccCCCCCeEEEEEEeCCC-C-CCHHHHHHHHHHHHHhchhh
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSA--GSKFVGKEIVTCIGMAKDGIHAVLVVFSVRS-R-FSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~--~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~-r-fT~EE~~al~~lq~lFG~~i  101 (300)
                      +..+++||||       |+++...  .+..+.+.+...+...-.+||++|+|+...+ . .+.+   .+..++.+ .+ .
T Consensus       135 ~~~l~lvDtP-------G~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~---~~~l~~~~-~~-~  202 (360)
T 3t34_A          135 VVNLTLIDLP-------GLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSD---AIKISREV-DP-S  202 (360)
T ss_dssp             SCSEEEEECC-------CBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCH---HHHHHHHS-CT-T
T ss_pred             CCCeEEEECC-------CCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHH---HHHHHHHh-cc-c
Confidence            5579999999       8887532  2334555666655555679998888876432 2 2322   23333322 22 2


Q ss_pred             hcceEEEEEcCCCCCC
Q 036659          102 FDYMIVVFTGGDELED  117 (300)
Q Consensus       102 ~~y~IVlFT~gD~Le~  117 (300)
                      -..+|+|+|-.|.+..
T Consensus       203 ~~~~i~V~nK~Dl~~~  218 (360)
T 3t34_A          203 GDRTFGVLTKIDLMDK  218 (360)
T ss_dssp             CTTEEEEEECGGGCCT
T ss_pred             CCCEEEEEeCCccCCC
Confidence            3469999999997764

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=96.96  E-value=0.0034  Score=63.92  Aligned_cols=71  Identities=15%  Similarity=0.175  Sum_probs=45.9

Q ss_pred             EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceE
Q 036659           27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMI  106 (300)
Q Consensus        27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~I  106 (300)
                      ..+++||||       |+.++.....    -+...+    ++.|++|+|+.....+|..+...+...   .... -..++
T Consensus       174 ~~l~LiDTP-------Gl~~~~~~~~----~~~~~i----~~aD~vL~Vvda~~~~s~~e~~~l~~~---l~~~-~~~ii  234 (695)
T 2j69_A          174 KGIEIVDSP-------GLNDTEARNE----LSLGYV----NNCHAILFVMRASQPCTLGERRYLENY---IKGR-GLTVF  234 (695)
T ss_dssp             TTEEEEECC-------CHHHHHTCHH----HHTHHH----HSSSEEEEEEETTSTTCHHHHHHHHHH---TTTS-CCCEE
T ss_pred             CCeEEEECC-------CCCchhhHHH----HHHHHH----HhCCEEEEEEeCCCccchhHHHHHHHH---HHhh-CCCEE
Confidence            359999999       8765432111    112222    478999999999878998887655422   2211 22488


Q ss_pred             EEEEcCCCCC
Q 036659          107 VVFTGGDELE  116 (300)
Q Consensus       107 VlFT~gD~Le  116 (300)
                      +|+|.-|.+.
T Consensus       235 iVlNK~Dl~~  244 (695)
T 2j69_A          235 FLVNAWDQVR  244 (695)
T ss_dssp             EEEECGGGGG
T ss_pred             EEEECccccc
Confidence            9999888654

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.86  E-value=0.0041  Score=48.31  Aligned_cols=78  Identities=17%  Similarity=0.088  Sum_probs=52.8

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ...+|..+.++|||       |..+........    .........+.|++++|+.+..+++..+......+..     .
T Consensus        44 ~~~~~~~~~l~Dt~-------G~~~~~~~~~~~----~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-----~  107 (161)
T 2dyk_A           44 VETDRGRFLLVDTG-------GLWSGDKWEKKI----QEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRR-----K  107 (161)
T ss_dssp             EEETTEEEEEEECG-------GGCSSSSCCHHH----HHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHH-----H
T ss_pred             EEeCCceEEEEECC-------CCCCccchHHHH----HHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHh-----c
Confidence            45688999999999       766543212222    2222223468899999999987899888766666655     2


Q ss_pred             hcceEEEEEcCCCC
Q 036659          102 FDYMIVVFTGGDEL  115 (300)
Q Consensus       102 ~~y~IVlFT~gD~L  115 (300)
                      -...+||.|.-|..
T Consensus       108 ~~p~ilv~nK~Dl~  121 (161)
T 2dyk_A          108 GKPVILVATKVDDP  121 (161)
T ss_dssp             TCCEEEEEECCCSG
T ss_pred             CCCEEEEEECcccc
Confidence            24578888887754

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=96.77  E-value=0.00039  Score=66.51  Aligned_cols=90  Identities=11%  Similarity=0.012  Sum_probs=56.7

Q ss_pred             CCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHH
Q 036659           10 FGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAA   89 (300)
Q Consensus        10 ~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~a   89 (300)
                      .++|..+... ...++|+.+.|||||       |+.+.   .+.+.+++..+...+.+++|++|+|+.....+|..+...
T Consensus        55 ~g~t~~~~~~-~~~~~~~~~~liDT~-------G~~~~---~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l  123 (456)
T 4dcu_A           55 PGVTRDRIYS-SAEWLNYDFNLIDTG-------GIDIG---DEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEV  123 (456)
T ss_dssp             ------CEEE-ECTTCSSCCEEECCC-------C---------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHH
T ss_pred             CCcceeEEEE-EEEECCceEEEEECC-------CCCCc---chHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHH
Confidence            4566666555 346789999999999       76632   233456666667667778999999999987899999887


Q ss_pred             HHHHHHHhchhhhcceEEEEEcCCCC
Q 036659           90 LHSWQTLFGKNVFDYMIVVFTGGDEL  115 (300)
Q Consensus        90 l~~lq~lFG~~i~~y~IVlFT~gD~L  115 (300)
                      ++.+..     .-..+|||.+--|..
T Consensus       124 ~~~l~~-----~~~pvilV~NK~D~~  144 (456)
T 4dcu_A          124 AKILYR-----TKKPVVLAVNKLDNT  144 (456)
T ss_dssp             HHHHTT-----CCSCEEEEEECC---
T ss_pred             HHHHHH-----cCCCEEEEEECccch
Confidence            777654     234566777766644

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=96.77  E-value=0.0037  Score=59.73  Aligned_cols=147  Identities=14%  Similarity=0.202  Sum_probs=84.3

Q ss_pred             CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCC----ChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH
Q 036659           11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSA----GSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE   86 (300)
Q Consensus        11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~----~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE   86 (300)
                      +.|..+... ...++|+.+.++|||       |+.+.+.    ...+-..-...++    .+.+++|+|+.+...+++.+
T Consensus       228 gtt~~~~~~-~~~~~~~~~~l~DT~-------G~~~~~~~~~~~e~~~~~~~~~~~----~~ad~~llviD~~~~~~~~~  295 (456)
T 4dcu_A          228 GTTRDAVDT-SFTYNQQEFVIVDTA-------GMRKKGKVYETTEKYSVLRALKAI----DRSEVVAVVLDGEEGIIEQD  295 (456)
T ss_dssp             ----CTTSE-EEEETTEEEEETTGG-------GTTTBTTBCCCCSHHHHHHHHHHH----HHCSEEEEEEETTTCCCHHH
T ss_pred             CeEEEEEEE-EEEECCceEEEEECC-------CCCcCcccchHHHHHHHHHHHHHH----hhCCEEEEEEeCCCCcCHHH
Confidence            344444333 356789999999999       6543221    1122111111222    36689999999988899988


Q ss_pred             HHHHHHHHHHhchhhhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhh
Q 036659           87 EAALHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQ  166 (300)
Q Consensus        87 ~~al~~lq~lFG~~i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~  166 (300)
                      ...+..+.. .|    .-+|||.+--|-.+....+.+++...     +++                           .+.
T Consensus       296 ~~~~~~~~~-~~----~~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~---------------------------~~~  338 (456)
T 4dcu_A          296 KRIAGYAHE-AG----KAVVIVVNKWDAVDKDESTMKEFEEN-----IRD---------------------------HFQ  338 (456)
T ss_dssp             HHHHHHHHH-TT----CEEEEEEECGGGSCCCSSHHHHHHHH-----HHH---------------------------HCG
T ss_pred             HHHHHHHHH-cC----CCEEEEEEChhcCCCchHHHHHHHHH-----HHH---------------------------hcc
Confidence            887777665 22    45677777777655433344544432     222                           222


Q ss_pred             hcCC-eEEEEeCCCcchhhchHHHHHHHHHHHHHHHHcCCCCCChHH
Q 036659          167 LCDN-RCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDDI  212 (300)
Q Consensus       167 ~C~~-R~~~FnNk~~de~~~~~Qv~eLL~~Ve~mv~~NgG~~yt~e~  212 (300)
                      ..++ .++....++.      .-|.+|++.|...+.+.....-|..+
T Consensus       339 ~~~~~~~~~~SA~~g------~gv~~l~~~i~~~~~~~~~~~~t~~l  379 (456)
T 4dcu_A          339 FLDYAPILFMSALTK------KRIHTLMPAIIKASENHSLRVQTNVL  379 (456)
T ss_dssp             GGTTSCEEECCTTTC------TTGGGHHHHHHHHHHHHTCCCCHHHH
T ss_pred             cCCCCCEEEEcCCCC------cCHHHHHHHHHHHHHHhcccCCHHHH
Confidence            2222 4555554432      46788998888888777665444443

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=96.61  E-value=0.0037  Score=59.41  Aligned_cols=90  Identities=16%  Similarity=0.126  Sum_probs=57.3

Q ss_pred             CCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHH
Q 036659           10 FGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAA   89 (300)
Q Consensus        10 ~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~a   89 (300)
                      .++|...... ...|+|+.+.++|||       |+...+  .+.+..++......+..+.|++|+|+.+...+|..+...
T Consensus        33 ~g~T~d~~~~-~~~~~~~~~~l~DT~-------G~~~~~--~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i  102 (439)
T 1mky_A           33 EGVTRDPVQD-TVEWYGKTFKLVDTC-------GVFDNP--QDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESL  102 (439)
T ss_dssp             -----CCSEE-EEEETTEEEEEEECT-------TTTSSG--GGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHH
T ss_pred             CCCccceeeE-EEEECCeEEEEEECC-------Cccccc--cchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHH
Confidence            4666666554 467899999999999       654321  111223344444445578999999999988899988776


Q ss_pred             HHHHHHHhchhhhcceEEEEEcCCC
Q 036659           90 LHSWQTLFGKNVFDYMIVVFTGGDE  114 (300)
Q Consensus        90 l~~lq~lFG~~i~~y~IVlFT~gD~  114 (300)
                      ...++..     -...|||.+--|.
T Consensus       103 ~~~l~~~-----~~p~ilv~NK~D~  122 (439)
T 1mky_A          103 ADFLRKS-----TVDTILVANKAEN  122 (439)
T ss_dssp             HHHHHHH-----TCCEEEEEESCCS
T ss_pred             HHHHHHc-----CCCEEEEEeCCCC
Confidence            6666542     2456777776663

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=96.60  E-value=0.056  Score=52.87  Aligned_cols=84  Identities=11%  Similarity=0.077  Sum_probs=45.4

Q ss_pred             ceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh
Q 036659           21 TIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN  100 (300)
Q Consensus        21 t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~  100 (300)
                      ...++|..+.++|||       |+.++.   +.+..+-.+.......+.|++|+|+.+....+.++......+...+.  
T Consensus       275 ~i~~~g~~l~liDT~-------G~~~~~---~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--  342 (476)
T 3gee_A          275 CFIHDKTMFRLTDTA-------GLREAG---EEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--  342 (476)
T ss_dssp             EEEETTEEEEEEC------------------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--
T ss_pred             EEEECCeEEEEEECC-------CCCcch---hHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--
Confidence            456899999999999       876533   22222222223345678999999999987888744333333333333  


Q ss_pred             hhcceEEEEEcCCCCCC
Q 036659          101 VFDYMIVVFTGGDELED  117 (300)
Q Consensus       101 i~~y~IVlFT~gD~Le~  117 (300)
                       -..+|||++--|....
T Consensus       343 -~~piIvV~NK~Dl~~~  358 (476)
T 3gee_A          343 -AAKFLTVANKLDRAAN  358 (476)
T ss_dssp             -TSEEEEEEECTTSCTT
T ss_pred             -CCCEEEEEECcCCCCc
Confidence             2567888888785544

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=96.59  E-value=0.049  Score=53.09  Aligned_cols=87  Identities=15%  Similarity=0.169  Sum_probs=50.2

Q ss_pred             CCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHH-HHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHH
Q 036659           12 APKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKE-IVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL   90 (300)
Q Consensus        12 vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kE-I~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al   90 (300)
                      .|..+... ...++|..+.++|||       |+.++..   .+... +.++. ....+.|++|+|+.+..+++.++...+
T Consensus       258 tT~d~~~~-~i~~~g~~v~liDT~-------G~~~~~~---~ve~~gi~~~~-~~~~~aD~vl~VvD~s~~~~~~~~~i~  325 (462)
T 3geh_A          258 TTRDVVES-QLVVGGIPVQVLDTA-------GIRETSD---QVEKIGVERSR-QAANTADLVLLTIDAATGWTTGDQEIY  325 (462)
T ss_dssp             CCHHHHHH-EEEETTEEEEECC-------------------------------CCCCSCSEEEEEEETTTCSCHHHHHHH
T ss_pred             eeEEEEEE-EEEECCEEEEEEECC-------ccccchh---HHHHHHHHHHh-hhhhcCCEEEEEeccCCCCCHHHHHHH
Confidence            44444333 356899999999999       7755432   22222 22332 345789999999999889999886666


Q ss_pred             HHHHHHhchhhhcceEEEEEcCCCCCC
Q 036659           91 HSWQTLFGKNVFDYMIVVFTGGDELED  117 (300)
Q Consensus        91 ~~lq~lFG~~i~~y~IVlFT~gD~Le~  117 (300)
                      ..+..       ..+|||++--|....
T Consensus       326 ~~l~~-------~piivV~NK~Dl~~~  345 (462)
T 3geh_A          326 EQVKH-------RPLILVMNKIDLVEK  345 (462)
T ss_dssp             HHHTT-------SCEEEEEECTTSSCG
T ss_pred             HhccC-------CcEEEEEECCCCCcc
Confidence            55532       478999998885543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=96.52  E-value=0.004  Score=59.18  Aligned_cols=149  Identities=13%  Similarity=0.144  Sum_probs=80.1

Q ss_pred             CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHH-HHHhhccCCCCCeEEEEEEeCCCCCCHHHHHH
Q 036659           11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKE-IVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAA   89 (300)
Q Consensus        11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kE-I~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~a   89 (300)
                      +.|..+... ...++|+.+.+||||       |+.+.....+.+.+- ..+.+. +..+.|++|+|+.+...+|.++...
T Consensus       208 gtT~d~~~~-~~~~~~~~~~l~DT~-------G~~~~~~~~~~~e~~~~~~~~~-~~~~ad~~llv~D~~~~~s~~~~~~  278 (436)
T 2hjg_A          208 GTTRDAVDT-SFTYNQQEFVIVDTA-------GMRKKGKVYETTEKYSVLRALK-AIDRSEVVAVVLDGEEGIIEQDKRI  278 (436)
T ss_dssp             ------CCE-EEEETTEEEEETTHH-------HHTCBTTBCCCCSHHHHHHHHH-HHHHCSEEEEEEETTTCCCHHHHHH
T ss_pred             CceeeeeEE-EEEECCeEEEEEECC-------CcCcCccccchHHHHHHHHHHH-HHHhCCEEEEEEcCCcCCcHHHHHH
Confidence            344444333 356789999999999       664433211111110 111111 1235689999999988899988765


Q ss_pred             HHHHHHHhchhhhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhc-
Q 036659           90 LHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLC-  168 (300)
Q Consensus        90 l~~lq~lFG~~i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C-  168 (300)
                      +..+..     .-..+|||++--|-.+....+.+++...     +..                           .+... 
T Consensus       279 ~~~~~~-----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~-----~~~---------------------------~l~~~~  321 (436)
T 2hjg_A          279 AGYAHE-----AGKAVVIVVNKWDAVDKDESTMKEFEEN-----IRD---------------------------HFQFLD  321 (436)
T ss_dssp             HHHHHH-----TTCEEEEEEECGGGSCCCTTHHHHHHHH-----HHH---------------------------HCGGGT
T ss_pred             HHHHHH-----cCCcEEEEEECccCCCcchHHHHHHHHH-----HHH---------------------------hcccCC
Confidence            554432     2356788888888665432233333322     111                           11111 


Q ss_pred             CCeEEEEeCCCcchhhchHHHHHHHHHHHHHHHHcCCCCCChH
Q 036659          169 DNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQPYTDD  211 (300)
Q Consensus       169 ~~R~~~FnNk~~de~~~~~Qv~eLL~~Ve~mv~~NgG~~yt~e  211 (300)
                      +-.++....++.      ..|.+|+..+...+.+.....-|..
T Consensus       322 ~~~~~~~SA~tg------~~v~~l~~~i~~~~~~~~~~~~t~~  358 (436)
T 2hjg_A          322 YAPILFMSALTK------KRIHTLMPAIIKASENHSLRVQTNV  358 (436)
T ss_dssp             TSCEEECCTTTC------TTGGGHHHHHHHHHHHHTCCCCHHH
T ss_pred             CCCEEEEecccC------CCHHHHHHHHHHHHHHhhcCCCHHH
Confidence            224554444432      4778888888888877665444433

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=96.32  E-value=0.0025  Score=55.76  Aligned_cols=85  Identities=13%  Similarity=0.116  Sum_probs=48.8

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCC--ChH----HHHHHHHHhhccCCCCCe-EEEEEEeCCCCCCHHHH-HHHHHHHHHh
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSA--GSK----FVGKEIVTCIGMAKDGIH-AVLVVFSVRSRFSQEEE-AALHSWQTLF   97 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~--~~e----~v~kEI~~ci~l~~pGpH-A~LLV~~v~~rfT~EE~-~al~~lq~lF   97 (300)
                      +..+.+||||       |+.+...  .++    ....-+...+.    +.| ++|+|+.....++..+. ..++.+    
T Consensus       124 ~~~l~lvDtp-------G~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~il~v~d~~~~~~~~~~~~~~~~~----  188 (299)
T 2aka_B          124 VLNLTLVDLP-------GMTKVPVGDQPPDIEFQIRDMLMQFVT----KENCLILAVSPANSDLANSDALKIAKEV----  188 (299)
T ss_dssp             CCSEEEEECC-------CBCSSCCSSSCTTHHHHHHHHHHHHHT----STTEEEEEEEESSSCGGGCHHHHHHHHH----
T ss_pred             CCCceEEeCC-------CCCCCcCCCCCchHHHHHHHHHHHHHc----CCCeEEEEEecCCcchhhhHHHHHHHHh----
Confidence            4789999999       8876432  122    22223333332    455 45578998767777664 223222    


Q ss_pred             chhhhcceEEEEEcCCCCCCCcccHHHhhh
Q 036659           98 GKNVFDYMIVVFTGGDELEDNDETLEDYLG  127 (300)
Q Consensus        98 G~~i~~y~IVlFT~gD~Le~~~~tledyl~  127 (300)
                      .. .-..+|+|+|--|.+... ..+.+++.
T Consensus       189 ~~-~~~~~i~V~NK~Dl~~~~-~~~~~~~~  216 (299)
T 2aka_B          189 DP-QGQRTIGVITKLDLMDEG-TDARDVLE  216 (299)
T ss_dssp             CT-TCSSEEEEEECGGGSCTT-CCCHHHHT
T ss_pred             CC-CCCeEEEEEEccccCCCC-chHHHHHh
Confidence            21 235789999999976542 22444543

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.19  E-value=0.016  Score=51.03  Aligned_cols=77  Identities=16%  Similarity=0.152  Sum_probs=47.7

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ..++|..+.++|||       |.++......   .+......+..++++++++|+... .+    ...+..+..+.....
T Consensus        45 ~~~~~~~~~l~Dtp-------G~~~~~~~~~---~~~~~~~~~~~~~~d~vi~v~D~~-~~----~~~~~~~~~~~~~~~  109 (271)
T 3k53_A           45 MEYREKEFLVVDLP-------GIYSLTAHSI---DELIARNFILDGNADVIVDIVDST-CL----MRNLFLTLELFEMEV  109 (271)
T ss_dssp             EEETTEEEEEEECC-------CCSCCCSSCH---HHHHHHHHHHTTCCSEEEEEEEGG-GH----HHHHHHHHHHHHTTC
T ss_pred             EEECCceEEEEeCC-------CccccccCCH---HHHHHHHhhhccCCcEEEEEecCC-cc----hhhHHHHHHHHhcCC
Confidence            46789999999999       8887654322   122222233457899999999987 33    234444444443321


Q ss_pred             hcceEEEEEcCCC
Q 036659          102 FDYMIVVFTGGDE  114 (300)
Q Consensus       102 ~~y~IVlFT~gD~  114 (300)
                       .-+||+.+--|.
T Consensus       110 -~p~ilv~NK~Dl  121 (271)
T 3k53_A          110 -KNIILVLNKFDL  121 (271)
T ss_dssp             -CSEEEEEECHHH
T ss_pred             -CCEEEEEEChhc
Confidence             456777776663

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.07  E-value=0.0023  Score=56.89  Aligned_cols=90  Identities=13%  Similarity=0.128  Sum_probs=50.4

Q ss_pred             CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChH--HHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHH
Q 036659           11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSK--FVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEA   88 (300)
Q Consensus        11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e--~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~   88 (300)
                      ++|...... ...++|..+.+||||       |..+.+....  .....+.+-. +...++|++|+|+.+. .. +..  
T Consensus        33 g~Tv~~~~~-~~~~~~~~~~lvDtp-------G~~~~~~~~~~~~~~e~i~~~~-~~~~~~d~vi~VvDas-~~-~~~--   99 (256)
T 3iby_A           33 GVTVEKKTG-EFLLGEHLIEITDLP-------GVYSLVANAEGISQDEQIAAQS-VIDLEYDCIINVIDAC-HL-ERH--   99 (256)
T ss_dssp             TSSSEEEEE-EEEETTEEEEEEECC-------CCSSCC------CHHHHHHHHH-HHHSCCSEEEEEEEGG-GH-HHH--
T ss_pred             CceEEEEEE-EEEECCeEEEEEeCC-------CcccccccccCCCHHHHHHHHH-HhhCCCCEEEEEeeCC-Cc-hhH--
Confidence            455444443 345789999999999       8877654210  1222233322 2236899999999987 31 222  


Q ss_pred             HHHHHHHHhchhhhcceEEEEEcCCCCC
Q 036659           89 ALHSWQTLFGKNVFDYMIVVFTGGDELE  116 (300)
Q Consensus        89 al~~lq~lFG~~i~~y~IVlFT~gD~Le  116 (300)
                       +.....+..  .-..+|||++--|...
T Consensus       100 -~~l~~~l~~--~~~pvilv~NK~Dl~~  124 (256)
T 3iby_A          100 -LYLTSQLFE--LGKPVVVALNMMDIAE  124 (256)
T ss_dssp             -HHHHHHHTT--SCSCEEEEEECHHHHH
T ss_pred             -HHHHHHHHH--cCCCEEEEEEChhcCC
Confidence             222222221  1346888888777543

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=96.06  E-value=0.072  Score=49.03  Aligned_cols=90  Identities=16%  Similarity=0.118  Sum_probs=51.1

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCCC--hHHHHHHHHHhhc-cCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSAG--SKFVGKEIVTCIG-MAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF  102 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~~--~e~v~kEI~~ci~-l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~  102 (300)
                      +..+++||||       |+++....  ++.+...+...+. ......+++|+|++....++..+.  +..+..+-.  .-
T Consensus       129 ~~~l~lvDTP-------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~--~~i~~~~~~--~~  197 (353)
T 2x2e_A          129 VLNLTLVDLP-------GMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA--LKVAKEVDP--QG  197 (353)
T ss_dssp             CCSEEEEECC-------CBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH--HHHHHHHCT--TC
T ss_pred             CCCcEEEECC-------CCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH--HHHHHHhCc--CC
Confidence            5689999999       88864331  2322222222221 123445677778887656776653  223333322  23


Q ss_pred             cceEEEEEcCCCCCCCcccHHHhhh
Q 036659          103 DYMIVVFTGGDELEDNDETLEDYLG  127 (300)
Q Consensus       103 ~y~IVlFT~gD~Le~~~~tledyl~  127 (300)
                      ..+|+|+|--|.+... ..+.+++.
T Consensus       198 ~~~i~V~NK~Dl~~~~-~~~~~~~~  221 (353)
T 2x2e_A          198 QRTIGVITKLDLMDEG-TDARDVLE  221 (353)
T ss_dssp             TTEEEEEECGGGSCTT-CCCHHHHT
T ss_pred             CceEEEeccccccCcc-hhHHHHHh
Confidence            5789999999977542 23455554

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=95.91  E-value=0.095  Score=42.14  Aligned_cols=76  Identities=14%  Similarity=0.022  Sum_probs=44.7

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ....+..+.++|||       |.-+..           ........+.|++|+|+.+..+-|-++  ...++..+.....
T Consensus        58 ~~~~~~~~~i~Dt~-------G~~~~~-----------~~~~~~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~~  117 (199)
T 4bas_A           58 FEKGRVAFTVFDMG-------GAKKFR-----------GLWETYYDNIDAVIFVVDSSDHLRLCV--VKSEIQAMLKHED  117 (199)
T ss_dssp             EEETTEEEEEEEEC-------CSGGGG-----------GGGGGGCTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTSHH
T ss_pred             EEeCCEEEEEEECC-------CCHhHH-----------HHHHHHHhcCCEEEEEEECCcHHHHHH--HHHHHHHHHhChh
Confidence            34678899999999       653211           112233568999999999985433222  2234444444322


Q ss_pred             ---------hcceEEEEEcCCCCCC
Q 036659          102 ---------FDYMIVVFTGGDELED  117 (300)
Q Consensus       102 ---------~~y~IVlFT~gD~Le~  117 (300)
                               -..+|||.|--|....
T Consensus       118 ~~~~~~~~~~~piilv~NK~Dl~~~  142 (199)
T 4bas_A          118 IRRELPGGGRVPFLFFANKMDAAGA  142 (199)
T ss_dssp             HHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred             hhhcccccCCCCEEEEEECcCCCCC
Confidence                     2346777777775543

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=95.87  E-value=0.24  Score=39.59  Aligned_cols=75  Identities=8%  Similarity=0.021  Sum_probs=45.5

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh-
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN-  100 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~-  100 (300)
                      ..+++..+.++|||       |.-+           .........++.|++++|+.+..+-|-++  +...+..+.... 
T Consensus        57 ~~~~~~~~~~~Dt~-------G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~  116 (186)
T 1ksh_A           57 LEHRGFKLNIWDVG-------GQKS-----------LRSYWRNYFESTDGLIWVVDSADRQRMQD--CQRELQSLLVEER  116 (186)
T ss_dssp             EEETTEEEEEEEEC-------CSHH-----------HHTTGGGGCTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGG
T ss_pred             EEECCEEEEEEECC-------CCHh-----------HHHHHHHHhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHhChh
Confidence            45689999999999       7521           12223344678999999999975444322  233444443321 


Q ss_pred             -hhcceEEEEEcCCCCC
Q 036659          101 -VFDYMIVVFTGGDELE  116 (300)
Q Consensus       101 -i~~y~IVlFT~gD~Le  116 (300)
                       .-.-.|||.|--|-..
T Consensus       117 ~~~~piilv~nK~Dl~~  133 (186)
T 1ksh_A          117 LAGATLLIFANKQDLPG  133 (186)
T ss_dssp             GTTCEEEEEEECTTSTT
T ss_pred             cCCCcEEEEEeCccCCC
Confidence             1234677777777544

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=95.76  E-value=0.37  Score=38.01  Aligned_cols=67  Identities=13%  Similarity=0.129  Sum_probs=39.4

Q ss_pred             EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhchhhhcce
Q 036659           27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFGKNVFDYM  105 (300)
Q Consensus        27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG~~i~~y~  105 (300)
                      ..+.++|||       |.-+....       ....    ..+.|++|+|+.+....|-++. ..+..+....+    ..+
T Consensus        93 ~~~~i~Dt~-------G~~~~~~~-------~~~~----~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~----~pi  150 (208)
T 3clv_A           93 IKFDIWDTA-------GQERYASI-------VPLY----YRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN----YII  150 (208)
T ss_dssp             EEEEEEECT-------TGGGCTTT-------HHHH----HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----CEE
T ss_pred             eEEEEEECC-------CcHHHHHH-------HHHH----hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC----CcE
Confidence            789999999       64332211       1111    2477899999998744333321 22223333222    678


Q ss_pred             EEEEEcCCCCC
Q 036659          106 IVVFTGGDELE  116 (300)
Q Consensus       106 IVlFT~gD~Le  116 (300)
                      |||+|.-| +.
T Consensus       151 ilv~NK~D-~~  160 (208)
T 3clv_A          151 ILVANKID-KN  160 (208)
T ss_dssp             EEEEECTT-CC
T ss_pred             EEEEECCC-cc
Confidence            99999888 53

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=95.45  E-value=0.36  Score=38.13  Aligned_cols=76  Identities=17%  Similarity=0.050  Sum_probs=38.2

Q ss_pred             eeeCCEE--EEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhc
Q 036659           22 IRIQVVL--EKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFG   98 (300)
Q Consensus        22 ~~~~Gr~--v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG   98 (300)
                      ..++|..  +.++|||       |.-+......       ..    ..+.|++++|+.+..+-+-++. ..+..+.....
T Consensus        45 ~~~~~~~~~~~i~Dt~-------G~~~~~~~~~-------~~----~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~  106 (189)
T 4dsu_A           45 VVIDGETCLLDILDTA-------GQEEYSAMRD-------QY----MRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD  106 (189)
T ss_dssp             EEETTEEEEEEEEECC-------CC---CTTHH-------HH----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT
T ss_pred             EEECCcEEEEEEEECC-------CcHHHHHHHH-------HH----HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence            3466765  6679999       6433322111       11    1257999999999743222221 11222222221


Q ss_pred             hhhhcceEEEEEcCCCCC
Q 036659           99 KNVFDYMIVVFTGGDELE  116 (300)
Q Consensus        99 ~~i~~y~IVlFT~gD~Le  116 (300)
                      . .-.-+|||+|.-|...
T Consensus       107 ~-~~~p~i~v~nK~Dl~~  123 (189)
T 4dsu_A          107 S-EDVPMVLVGNKCDLPS  123 (189)
T ss_dssp             C-SCCCEEEEEECTTSSS
T ss_pred             C-CCCcEEEEEECccCcc
Confidence            1 1234677888777543

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=95.40  E-value=0.77  Score=36.76  Aligned_cols=76  Identities=13%  Similarity=0.052  Sum_probs=46.4

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ..+++..+.++|||       |.-+....           ......+.|++|+|+.+..+-+-++  +...+..++....
T Consensus        61 ~~~~~~~~~~~Dt~-------G~~~~~~~-----------~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~  120 (189)
T 2x77_A           61 LQYKNISFEVWDLG-------GQTGVRPY-----------WRCYFSDTDAVIYVVDSTDRDRMGV--AKHELYALLDEDE  120 (189)
T ss_dssp             EEETTEEEEEEEEC-------CSSSSCCC-----------CSSSSTTCCEEEEEEETTCCTTHHH--HHHHHHHHHTCST
T ss_pred             EEECCEEEEEEECC-------CCHhHHHH-----------HHHHhhcCCEEEEEEeCCCHHHHHH--HHHHHHHHHhhhh
Confidence            45678999999999       64332211           1223468999999999975544332  2344455544321


Q ss_pred             --hcceEEEEEcCCCCCC
Q 036659          102 --FDYMIVVFTGGDELED  117 (300)
Q Consensus       102 --~~y~IVlFT~gD~Le~  117 (300)
                        -.-+|||+|--|-...
T Consensus       121 ~~~~piilv~nK~Dl~~~  138 (189)
T 2x77_A          121 LRKSLLLIFANKQDLPDA  138 (189)
T ss_dssp             TTTCEEEEEEECTTSTTC
T ss_pred             cCCCeEEEEEECCCCcCC
Confidence              2346778887775543

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=95.27  E-value=0.11  Score=47.15  Aligned_cols=79  Identities=11%  Similarity=0.136  Sum_probs=51.8

Q ss_pred             eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh
Q 036659           23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF  102 (300)
Q Consensus        23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~  102 (300)
                      .+++..++++|||       |+..  .....+.+.+......+-.+.+++++|+.... |+..++..++.+..     .-
T Consensus        52 ~~~~~~i~~iDTp-------G~~~--~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~-----~~  116 (301)
T 1ega_A           52 TEGAYQAIYVDTP-------GLHM--EEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE-----GK  116 (301)
T ss_dssp             EETTEEEEEESSS-------SCCH--HHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS-----SS
T ss_pred             EECCeeEEEEECc-------CCCc--cchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh-----cC
Confidence            4578899999999       7651  01123334454445556678999999999975 99988766555431     22


Q ss_pred             cceEEEEEcCCCCC
Q 036659          103 DYMIVVFTGGDELE  116 (300)
Q Consensus       103 ~y~IVlFT~gD~Le  116 (300)
                      .-.|++.+.-|...
T Consensus       117 ~P~ilvlNK~D~~~  130 (301)
T 1ega_A          117 APVILAVNKVDNVQ  130 (301)
T ss_dssp             SCEEEEEESTTTCC
T ss_pred             CCEEEEEECcccCc
Confidence            34667777666543

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=95.18  E-value=0.12  Score=40.54  Aligned_cols=73  Identities=25%  Similarity=0.236  Sum_probs=41.2

Q ss_pred             eeeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhch
Q 036659           22 IRIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGK   99 (300)
Q Consensus        22 ~~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~   99 (300)
                      ..++|  ..+.++|||       |.-+....           .....++.|++++|+.+..+-+   ...+..+...+..
T Consensus        51 ~~~~~~~~~~~i~Dt~-------G~~~~~~~-----------~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~  109 (181)
T 3tw8_B           51 VEINGEKVKLQIWDTA-------GQERFRTI-----------TSTYYRGTHGVIVVYDVTSAES---FVNVKRWLHEINQ  109 (181)
T ss_dssp             EEETTEEEEEEEEEET-------TGGGCSSC-----------CGGGGTTCSEEEEEEETTCHHH---HHHHHHHHHHHHH
T ss_pred             EEECCEEEEEEEEcCC-------Cchhhhhh-----------HHHHhccCCEEEEEEECCCHHH---HHHHHHHHHHHHH
Confidence            35677  578999999       53222111           1223468899999999974322   2223333333333


Q ss_pred             hh-hcceEEEEEcCCCC
Q 036659          100 NV-FDYMIVVFTGGDEL  115 (300)
Q Consensus       100 ~i-~~y~IVlFT~gD~L  115 (300)
                      .. -...|||+|.-|..
T Consensus       110 ~~~~~p~ilv~nK~Dl~  126 (181)
T 3tw8_B          110 NCDDVCRILVGNKNDDP  126 (181)
T ss_dssp             HCTTSEEEEEEECTTCG
T ss_pred             hCCCCCEEEEEECCCCc
Confidence            22 23457778877744

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=95.13  E-value=0.015  Score=51.88  Aligned_cols=147  Identities=10%  Similarity=0.059  Sum_probs=78.8

Q ss_pred             CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCCh--HHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHH
Q 036659           11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGS--KFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEA   88 (300)
Q Consensus        11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~--e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~   88 (300)
                      ++|...... ....+|..+.+||||       |..+.....  ......+. ...+...+++++++|+... .+ +....
T Consensus        35 g~t~~~~~~-~~~~~~~~~~liDtp-------G~~~~~~~~~~~~~~e~i~-~~~~~~~~~d~ii~VvD~~-~~-~~~~~  103 (274)
T 3i8s_A           35 GVTVERKEG-QFSTTDHQVTLVDLP-------GTYSLTTISSQTSLDEQIA-CHYILSGDADLLINVVDAS-NL-ERNLY  103 (274)
T ss_dssp             TSSSEEEEE-EEECSSCEEEEEECC-------CCSCSCC----CCHHHHHH-HHHHHHTCCSEEEEEEEGG-GH-HHHHH
T ss_pred             CeeEEEEEE-EEEeCCCceEEEECc-------CCCccccccccCCHHHHHH-HHHHhhcCCCEEEEEecCC-Ch-HHHHH
Confidence            444443333 245578899999999       887765211  11222222 2223356899999999987 32 22233


Q ss_pred             HHHHHHHHhchhhhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhc
Q 036659           89 ALHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLC  168 (300)
Q Consensus        89 al~~lq~lFG~~i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C  168 (300)
                      .+..+..+     -.-+|||++--|..+..+      +.    ..+..                           +-+..
T Consensus       104 ~~~~l~~~-----~~p~ivv~NK~Dl~~~~~------~~----~~~~~---------------------------l~~~l  141 (274)
T 3i8s_A          104 LTLQLLEL-----GIPCIVALNMLDIAEKQN------IR----IEIDA---------------------------LSARL  141 (274)
T ss_dssp             HHHHHHHH-----TCCEEEEEECHHHHHHTT------EE----ECHHH---------------------------HHHHH
T ss_pred             HHHHHHhc-----CCCEEEEEECccchhhhh------HH----HHHHH---------------------------HHHhc
Confidence            33333322     245788888766443210      00    11222                           33444


Q ss_pred             CCeEEEEeCCCcchhhchHHHHHHHHHHHHHHHHcC--CCCCChHHHHHH
Q 036659          169 DNRCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQND--GQPYTDDIFVEL  216 (300)
Q Consensus       169 ~~R~~~FnNk~~de~~~~~Qv~eLL~~Ve~mv~~Ng--G~~yt~e~f~e~  216 (300)
                      |-.++....++      ...+.+|++.|.+.+....  -..|..++-..+
T Consensus       142 g~~~i~~SA~~------g~gi~el~~~i~~~~~~~~~~~~~~~~~l~~~~  185 (274)
T 3i8s_A          142 GCPVIPLVSTR------GRGIEALKLAIDRYKANENVELVHYAQPLLNEA  185 (274)
T ss_dssp             TSCEEECCCGG------GHHHHHHHHHHHTCCCCCCCCCCCCCHHHHHHH
T ss_pred             CCCEEEEEcCC------CCCHHHHHHHHHHHHhcCCCcccCCCHHHHHHH
Confidence            55566555432      3688899988877665432  124666654443

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=95.12  E-value=0.22  Score=41.52  Aligned_cols=134  Identities=16%  Similarity=0.187  Sum_probs=61.7

Q ss_pred             eeeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhch
Q 036659           22 IRIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGK   99 (300)
Q Consensus        22 ~~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~   99 (300)
                      ..++|.  .+.++|||       |.-+..           ........+.|++|+|+.+..+-|-++.  ...|...+-.
T Consensus        75 ~~~~~~~~~l~l~Dt~-------G~~~~~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~--~~~~~~~~~~  134 (214)
T 2j1l_A           75 LQVKGKPVHLHIWDTA-------GQDDYD-----------RLRPLFYPDASVLLLCFDVTSPNSFDNI--FNRWYPEVNH  134 (214)
T ss_dssp             EEETTEEEEEEEEEC---------------------------------CEEEEEEEEETTCHHHHHHH--HHTHHHHHHH
T ss_pred             EEECCEEEEEEEEECC-------Cchhhh-----------HHHHHHhccCCEEEEEEECcCHHHHHHH--HHHHHHHHHH
Confidence            345665  68899999       632211           1112234689999999998743222221  1122222211


Q ss_pred             hh-hcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcCC-eEEEEeC
Q 036659          100 NV-FDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDN-RCVLFDN  177 (300)
Q Consensus       100 ~i-~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~-R~~~FnN  177 (300)
                      .. -.-+|||.|--|-..+  ..+.+.+........       .+.-.               ..+.+..+. .|+....
T Consensus       135 ~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v-------~~~~~---------------~~~~~~~~~~~~~~~SA  190 (214)
T 2j1l_A          135 FCKKVPIIVVGCKTDLRKD--KSLVNKLRRNGLEPV-------TYHRG---------------QEMARSVGAVAYLECSA  190 (214)
T ss_dssp             HCSSCCEEEEEECGGGGSC--HHHHHHHHHTTCCCC-------CHHHH---------------HHHHHHTTCSEEEECBT
T ss_pred             hCCCCCEEEEEEChhhhcc--chhhhhhcccccCcc-------cHHHH---------------HHHHHhcCCCEEEEecC
Confidence            11 1246777777775544  233333322000000       00000               014455565 6766665


Q ss_pred             CCcchhhchHHHHHHHHHHHHHHHHcCC
Q 036659          178 KTKDEAKRTEQIWKLLSLVNSVAVQNDG  205 (300)
Q Consensus       178 k~~de~~~~~Qv~eLL~~Ve~mv~~NgG  205 (300)
                      ++.      ..|.+|+..|-..+.++.+
T Consensus       191 ~~g------~gi~el~~~l~~~~~~~~~  212 (214)
T 2j1l_A          191 RLH------DNVHAVFQEAAEVALSSRG  212 (214)
T ss_dssp             TTT------BSHHHHHHHHHHHHHHC--
T ss_pred             CCC------CCHHHHHHHHHHHHHHhhc
Confidence            542      4788899888877776654

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=95.11  E-value=0.14  Score=45.31  Aligned_cols=131  Identities=14%  Similarity=0.054  Sum_probs=72.7

Q ss_pred             CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHH
Q 036659           11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL   90 (300)
Q Consensus        11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al   90 (300)
                      ++|...... ....++..+.++|||       |..+.+..+.  ...+.+-.. ...++|++++|+.+. .+.    ..+
T Consensus        37 g~tv~~~~~-~~~~~~~~~~l~Dtp-------G~~~~~~~~~--~e~v~~~~~-~~~~~d~ii~V~D~t-~~~----~~~  100 (258)
T 3a1s_A           37 GVTVEKKEG-VFTYKGYTINLIDLP-------GTYSLGYSSI--DEKIARDYL-LKGDADLVILVADSV-NPE----QSL  100 (258)
T ss_dssp             TSCCEEEEE-EEEETTEEEEEEECC-------CCSSCCSSSH--HHHHHHHHH-HHSCCSEEEEEEETT-SCH----HHH
T ss_pred             CceEEEEEE-EEEECCeEEEEEECC-------CcCccCCCCH--HHHHHHHHH-hhcCCCEEEEEeCCC-chh----hHH
Confidence            444443332 234568999999999       8876654321  112222221 126899999999987 442    223


Q ss_pred             HHHHHHhchhhhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcCC
Q 036659           91 HSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDN  170 (300)
Q Consensus        91 ~~lq~lFG~~i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~  170 (300)
                      ..+..+...  -.-+||+.+--|..+..+      +    ....+.                           +.+..|-
T Consensus       101 ~~~~~l~~~--~~pvilv~NK~Dl~~~~~------i----~~~~~~---------------------------l~~~lg~  141 (258)
T 3a1s_A          101 YLLLEILEM--EKKVILAMTAIDEAKKTG------M----KIDRYE---------------------------LQKHLGI  141 (258)
T ss_dssp             HHHHHHHTT--TCCEEEEEECHHHHHHTT------C----CBCHHH---------------------------HHHHHCS
T ss_pred             HHHHHHHhc--CCCEEEEEECcCCCCccc------h----HHHHHH---------------------------HHHHcCC
Confidence            344444332  235778888666432211      1    112233                           4445555


Q ss_pred             eEEEEeCCCcchhhchHHHHHHHHHHHHHHHH
Q 036659          171 RCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQ  202 (300)
Q Consensus       171 R~~~FnNk~~de~~~~~Qv~eLL~~Ve~mv~~  202 (300)
                      .|+...-++      ...+.+|++.|...+..
T Consensus       142 ~vi~~SA~~------g~gi~el~~~i~~~~~~  167 (258)
T 3a1s_A          142 PVVFTSSVT------GEGLEELKEKIVEYAQK  167 (258)
T ss_dssp             CEEECCTTT------CTTHHHHHHHHHHHHHS
T ss_pred             CEEEEEeeC------CcCHHHHHHHHHHHhhc
Confidence            565555443      24788899888887653

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=95.09  E-value=0.6  Score=36.19  Aligned_cols=76  Identities=12%  Similarity=0.023  Sum_probs=45.9

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh-
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN-  100 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~-  100 (300)
                      ..+++..+.++|||       |.-+..           ........+.|++|+|+.+..+-+-++  ....+..++... 
T Consensus        46 ~~~~~~~~~~~Dt~-------G~~~~~-----------~~~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~  105 (171)
T 1upt_A           46 VTYKNLKFQVWDLG-------GLTSIR-----------PYWRCYYSNTDAVIYVVDSCDRDRIGI--SKSELVAMLEEEE  105 (171)
T ss_dssp             EEETTEEEEEEEEC-------CCGGGG-----------GGGGGGCTTCSEEEEEEETTCCTTHHH--HHHHHHHHHTCGG
T ss_pred             EEECCEEEEEEECC-------CChhhh-----------HHHHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhchh
Confidence            45778999999999       643211           112234468999999999975533322  223444444332 


Q ss_pred             -hhcceEEEEEcCCCCCC
Q 036659          101 -VFDYMIVVFTGGDELED  117 (300)
Q Consensus       101 -i~~y~IVlFT~gD~Le~  117 (300)
                       .-..++||+|--|-...
T Consensus       106 ~~~~piilv~nK~Dl~~~  123 (171)
T 1upt_A          106 LRKAILVVFANKQDMEQA  123 (171)
T ss_dssp             GTTCEEEEEEECTTSTTC
T ss_pred             hCCCEEEEEEECCCCcCC
Confidence             12356788887775543

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=94.93  E-value=0.032  Score=53.92  Aligned_cols=128  Identities=12%  Similarity=0.114  Sum_probs=74.8

Q ss_pred             eeCCE-EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           23 RIQVV-LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        23 ~~~Gr-~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      .+.+. .+++||||       |..|.........+....+    ..+.+++|+|+.+  .+++.+...+..+...     
T Consensus        78 ~~~~~~~l~liDTp-------G~~d~~~l~~~~~~~~~~~----l~~aD~vllVvD~--~~~~~~~~~l~~l~~~-----  139 (423)
T 3qq5_A           78 ELHPIGPVTLVDTP-------GLDDVGELGRLRVEKARRV----FYRADCGILVTDS--APTPYEDDVVNLFKEM-----  139 (423)
T ss_dssp             EETTTEEEEEEECS-------STTCCCTTCCCCHHHHHHH----HTSCSEEEEECSS--SCCHHHHHHHHHHHHT-----
T ss_pred             EECCCCeEEEEECc-------CCCcccchhHHHHHHHHHH----HhcCCEEEEEEeC--CChHHHHHHHHHHHhc-----
Confidence            44444 89999999       7766543211111112222    2478999999987  6677777777777665     


Q ss_pred             hcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcCCeEEEEeCCCcc
Q 036659          102 FDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTKD  181 (300)
Q Consensus       102 ~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~R~~~FnNk~~d  181 (300)
                      -...|||++--|.....  .. +..        +.                           +.+.++-.|+..+.++. 
T Consensus       140 ~~piIvV~NK~Dl~~~~--~~-~~~--------~~---------------------------l~~~~g~~v~~vSAktg-  180 (423)
T 3qq5_A          140 EIPFVVVVNKIDVLGEK--AE-ELK--------GL---------------------------YESRYEAKVLLVSALQK-  180 (423)
T ss_dssp             TCCEEEECCCCTTTTCC--CT-HHH--------HH---------------------------SSCCTTCCCCCCSSCCT-
T ss_pred             CCCEEEEEeCcCCCCcc--HH-HHH--------HH---------------------------HHHHcCCCEEEEECCCC-
Confidence            23567777777765442  11 111        11                           22333445555555542 


Q ss_pred             hhhchHHHHHHHHHHHHHHHHcCCCCCChHH
Q 036659          182 EAKRTEQIWKLLSLVNSVAVQNDGQPYTDDI  212 (300)
Q Consensus       182 e~~~~~Qv~eLL~~Ve~mv~~NgG~~yt~e~  212 (300)
                           ..+.+|++.|...+.+....++..++
T Consensus       181 -----~gI~eL~~~L~~~l~~~~e~~l~~dL  206 (423)
T 3qq5_A          181 -----KGFDDIGKTISEILPGDEEIPYLGDL  206 (423)
T ss_dssp             -----TSTTTHHHHHHHHSCCCCCCCSCSCC
T ss_pred             -----CCHHHHHHHHHHhhhhhccCcchhhc
Confidence                 36777888888888666444544433

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=94.93  E-value=0.14  Score=40.40  Aligned_cols=71  Identities=11%  Similarity=-0.024  Sum_probs=39.1

Q ss_pred             EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhchhhhcce
Q 036659           27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGKNVFDYM  105 (300)
Q Consensus        27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~~i~~y~  105 (300)
                      ..+.++|||       |.-.       ...    .......+.|++|+|+.+..+.|-++ ...+..+...... .-..+
T Consensus        70 ~~~~l~Dt~-------G~~~-------~~~----~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pi  130 (195)
T 3bc1_A           70 IHLQLWDTA-------GLER-------FRS----LTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS-ENPDI  130 (195)
T ss_dssp             EEEEEEEEC-------CSGG-------GHH----HHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSS-SSCCE
T ss_pred             EEEEEEeCC-------CcHH-------HHH----HHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCE
Confidence            589999999       7521       111    12223468899999999874433332 1222222222110 12357


Q ss_pred             EEEEEcCCCCC
Q 036659          106 IVVFTGGDELE  116 (300)
Q Consensus       106 IVlFT~gD~Le  116 (300)
                      |||+|.-|...
T Consensus       131 ilv~nK~Dl~~  141 (195)
T 3bc1_A          131 VLCGNKSDLED  141 (195)
T ss_dssp             EEEEECTTCGG
T ss_pred             EEEEECccccc
Confidence            88888877543

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=94.76  E-value=0.42  Score=38.24  Aligned_cols=76  Identities=16%  Similarity=0.030  Sum_probs=38.9

Q ss_pred             eeeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhc
Q 036659           22 IRIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFG   98 (300)
Q Consensus        22 ~~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG   98 (300)
                      ..++|.  .+.++|||       |.-+..           ........+.+++++|+.+..+-+-++. ..+..+.....
T Consensus        62 ~~~~~~~~~~~l~Dt~-------G~~~~~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~  123 (190)
T 3con_A           62 VVIDGETCLLDILDTA-------GQEEYS-----------AMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD  123 (190)
T ss_dssp             EEETTEEEEEEEEECC-------C----------------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT
T ss_pred             EEECCEEEEEEEEECC-------ChHHHH-----------HHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC
Confidence            345665  48899999       632211           1112234688999999998744332222 12222322221


Q ss_pred             hhhhcceEEEEEcCCCCC
Q 036659           99 KNVFDYMIVVFTGGDELE  116 (300)
Q Consensus        99 ~~i~~y~IVlFT~gD~Le  116 (300)
                      . .-.-++||.|.-|...
T Consensus       124 ~-~~~p~ilv~nK~Dl~~  140 (190)
T 3con_A          124 S-DDVPMVLVGNKCDLPT  140 (190)
T ss_dssp             C-SCCCEEEEEECTTCSC
T ss_pred             C-CCCeEEEEEECCcCCc
Confidence            1 1235788888888554

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=94.70  E-value=0.22  Score=48.33  Aligned_cols=82  Identities=16%  Similarity=0.206  Sum_probs=50.6

Q ss_pred             CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHH
Q 036659           11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL   90 (300)
Q Consensus        11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al   90 (300)
                      ++|...... ...++++.+++||||       |.       +...+.+...    ..+.+++|||+.+......+....+
T Consensus        58 GiTi~~~~~-~~~~~~~~i~iiDtP-------Gh-------~~~~~~~~~~----~~~aD~~ilVvda~~g~~~qt~e~l  118 (482)
T 1wb1_A           58 GITIDIGFS-AFKLENYRITLVDAP-------GH-------ADLIRAVVSA----ADIIDLALIVVDAKEGPKTQTGEHM  118 (482)
T ss_dssp             ------CCC-EEEETTEEEEECCCS-------SH-------HHHHHHHHHH----TTSCCEEEEEEETTTCSCHHHHHHH
T ss_pred             ccEEecceE-EEEECCEEEEEEECC-------Ch-------HHHHHHHHHH----HhhCCEEEEEEecCCCccHHHHHHH
Confidence            445444333 345689999999999       74       2233444433    3578999999999766777766666


Q ss_pred             HHHHHHhchhhhcceEEEEEcCCCCC
Q 036659           91 HSWQTLFGKNVFDYMIVVFTGGDELE  116 (300)
Q Consensus        91 ~~lq~lFG~~i~~y~IVlFT~gD~Le  116 (300)
                      ..+.. +|   ..+ ||+++--|...
T Consensus       119 ~~~~~-~~---ip~-IvviNK~Dl~~  139 (482)
T 1wb1_A          119 LILDH-FN---IPI-IVVITKSDNAG  139 (482)
T ss_dssp             HHHHH-TT---CCB-CEEEECTTSSC
T ss_pred             HHHHH-cC---CCE-EEEEECCCccc
Confidence            65433 44   344 88888777553

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=94.68  E-value=0.36  Score=37.45  Aligned_cols=73  Identities=12%  Similarity=0.058  Sum_probs=38.8

Q ss_pred             eCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhchh
Q 036659           24 IQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGKN  100 (300)
Q Consensus        24 ~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~~  100 (300)
                      ++|.  .+.++|||       |.-+.           ........++.|++++|+.+..+-|-++ ...+..+....+.+
T Consensus        50 ~~~~~~~l~i~Dt~-------G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~  111 (170)
T 1z08_A           50 IGGKRVNLAIWDTA-------GQERF-----------HALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE  111 (170)
T ss_dssp             SSSCEEEEEEEECC-------CC------------------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGG
T ss_pred             ECCEEEEEEEEECC-------CcHhh-----------hhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC
Confidence            4454  57788999       63221           1112334568899999999874333222 12223333333322


Q ss_pred             hhcceEEEEEcCCCCC
Q 036659          101 VFDYMIVVFTGGDELE  116 (300)
Q Consensus       101 i~~y~IVlFT~gD~Le  116 (300)
                        ..++||.|.-|-..
T Consensus       112 --~piilv~nK~Dl~~  125 (170)
T 1z08_A          112 --ICLCIVGNKIDLEK  125 (170)
T ss_dssp             --SEEEEEEECGGGGG
T ss_pred             --CeEEEEEECccccc
Confidence              34677888777543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=94.58  E-value=0.019  Score=54.54  Aligned_cols=91  Identities=12%  Similarity=0.029  Sum_probs=49.6

Q ss_pred             CCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHH
Q 036659           10 FGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAA   89 (300)
Q Consensus        10 ~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~a   89 (300)
                      .|+|...... ...++|+.+.++|||       |+...+.+   +.+++..-...+-.+.|++|+|+.+...+|..+...
T Consensus        35 ~g~T~d~~~~-~~~~~~~~~~l~DT~-------G~~~~~~~---~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~  103 (436)
T 2hjg_A           35 PGVTRDRIYS-SAEWLNYDFNLIDTG-------GIDIGDEP---FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEV  103 (436)
T ss_dssp             ------CEEE-ECTTCSSCCEEEC----------------C---HHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH
T ss_pred             CCCccceEEE-EEEECCceEEEEECC-------CCCCcchh---HHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH
Confidence            3455444333 345788999999999       76432211   334444433444567899999999988899888665


Q ss_pred             HHHHHHHhchhhhcceEEEEEcCCCCC
Q 036659           90 LHSWQTLFGKNVFDYMIVVFTGGDELE  116 (300)
Q Consensus        90 l~~lq~lFG~~i~~y~IVlFT~gD~Le  116 (300)
                      .+.+..     .-..+|||.+--|...
T Consensus       104 ~~~l~~-----~~~pvilv~NK~D~~~  125 (436)
T 2hjg_A          104 AKILYR-----TKKPVVLAVNKLDNTE  125 (436)
T ss_dssp             HHHHTT-----CCSCEEEEEECCCC--
T ss_pred             HHHHHH-----cCCCEEEEEECccCcc
Confidence            554432     2346788888777553

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=94.54  E-value=0.12  Score=48.12  Aligned_cols=48  Identities=13%  Similarity=0.144  Sum_probs=32.9

Q ss_pred             cCCCCCeEEEEEEeC-CCCCCHHHHHHHHHHHHHhchhhhcceEEEEEcCCCCCC
Q 036659           64 MAKDGIHAVLVVFSV-RSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDELED  117 (300)
Q Consensus        64 l~~pGpHA~LLV~~v-~~rfT~EE~~al~~lq~lFG~~i~~y~IVlFT~gD~Le~  117 (300)
                      +....+|++|+++.. +..|++-+...+..+    +.  -..+|||++-.|.+..
T Consensus       141 ~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~--~~piIlV~NK~Dl~~~  189 (361)
T 2qag_A          141 IIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HN--KVNIVPVIAKADTLTL  189 (361)
T ss_dssp             CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS---SCEEEEEECCSSSCH
T ss_pred             ccCCceEEEEEEEecCCCCcchhHHHHHHHh----cc--CCCEEEEEECCCCCCH
Confidence            345678999988875 558888876555443    32  2358999999897654

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=94.53  E-value=0.17  Score=46.59  Aligned_cols=79  Identities=19%  Similarity=0.111  Sum_probs=46.1

Q ss_pred             eCCEEEEEEeCCCCcccCcccCCCCCCh-HHHHHHHHHhhccCCCCCeEEEEEEeCCCC--CCHHH-HHHHHHHHHHhch
Q 036659           24 IQVVLEKVIDTRWVRHAIARLFDFSAGS-KFVGKEIVTCIGMAKDGIHAVLVVFSVRSR--FSQEE-EAALHSWQTLFGK   99 (300)
Q Consensus        24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~-e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r--fT~EE-~~al~~lq~lFG~   99 (300)
                      .+|..+.++|||       |+.+..... ..+....   +.......|++|+|+.+.+.  |+.++ ...+..+...++ 
T Consensus       211 ~~~~~~~l~Dt~-------G~~~~~~~~~~~~~~~~---~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-  279 (357)
T 2e87_A          211 DGYFRYQIIDTP-------GLLDRPISERNEIEKQA---ILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-  279 (357)
T ss_dssp             ETTEEEEEEECT-------TTSSSCSTTSCHHHHHH---HHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-
T ss_pred             ecCceEEEEeCC-------CccccchhhhhHHHHHH---HHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-
Confidence            467889999999       765543221 1122221   21123468999999997643  35444 566677777775 


Q ss_pred             hhhcceEEEEEcCCCC
Q 036659          100 NVFDYMIVVFTGGDEL  115 (300)
Q Consensus       100 ~i~~y~IVlFT~gD~L  115 (300)
                        -.-+|||+|--|-.
T Consensus       280 --~~piilV~NK~Dl~  293 (357)
T 2e87_A          280 --DLPFLVVINKIDVA  293 (357)
T ss_dssp             --TSCEEEEECCTTTC
T ss_pred             --CCCEEEEEECcccC
Confidence              23455666555543

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=94.52  E-value=0.079  Score=42.87  Aligned_cols=80  Identities=16%  Similarity=0.073  Sum_probs=47.2

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ..++|..+.++|||       |+.+.....+.  ..+.+... ...+.|++|+|+.+..+.|.++...+..+......+ 
T Consensus        47 ~~~~~~~~~l~Dt~-------G~~~~~~~~~~--~~~~~~~~-~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~-  115 (172)
T 2gj8_A           47 IHIDGMPLHIIDTA-------GLREASDEVER--IGIERAWQ-EIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAK-  115 (172)
T ss_dssp             EEETTEEEEEEECC-------CCSCCSSHHHH--HHHHHHHH-HHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTT-
T ss_pred             EEECCeEEEEEECC-------CcccchhHHHH--HHHHHHHH-HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccC-
Confidence            56789999999999       76543221111  11222221 135889999999998777766555555454433221 


Q ss_pred             hcceEEEEEcCC
Q 036659          102 FDYMIVVFTGGD  113 (300)
Q Consensus       102 ~~y~IVlFT~gD  113 (300)
                       .-+|||.+--|
T Consensus       116 -~p~ilv~NK~D  126 (172)
T 2gj8_A          116 -LPITVVRNKAD  126 (172)
T ss_dssp             -CCEEEEEECHH
T ss_pred             -CCEEEEEECcc
Confidence             23566776545

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.51  E-value=0.24  Score=38.93  Aligned_cols=75  Identities=16%  Similarity=0.121  Sum_probs=40.2

Q ss_pred             eeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhch
Q 036659           23 RIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGK   99 (300)
Q Consensus        23 ~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~   99 (300)
                      .++|.  .+.++|||       |.-+..           ........+.|++++|+.+..+.+-++ ...+..+..... 
T Consensus        54 ~~~~~~~~~~~~Dt~-------G~~~~~-----------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-  114 (180)
T 2g6b_A           54 DVDGVKVKLQMWDTA-------GQERFR-----------SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-  114 (180)
T ss_dssp             EETTEEEEEEEEECC-------CC-------------------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-
T ss_pred             EECCEEEEEEEEeCC-------CcHHHH-----------HHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-
Confidence            45665  78899999       632111           112223457899999999974333222 122233333322 


Q ss_pred             hhhcceEEEEEcCCCCCC
Q 036659          100 NVFDYMIVVFTGGDELED  117 (300)
Q Consensus       100 ~i~~y~IVlFT~gD~Le~  117 (300)
                       .-...+||+|.-|-...
T Consensus       115 -~~~piilv~nK~Dl~~~  131 (180)
T 2g6b_A          115 -HDVALMLLGNKVDSAHE  131 (180)
T ss_dssp             -TTCEEEEEEECCSTTSC
T ss_pred             -CCCcEEEEEECcccCcc
Confidence             12356788888786543

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=94.40  E-value=0.56  Score=35.70  Aligned_cols=75  Identities=17%  Similarity=0.103  Sum_probs=39.7

Q ss_pred             eeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhch
Q 036659           23 RIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGK   99 (300)
Q Consensus        23 ~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~   99 (300)
                      .++|.  .+.++|||       |.-+..    .+..   .++    .+.|++++|+.+..+-+-++ ...+..+......
T Consensus        45 ~~~~~~~~~~~~D~~-------G~~~~~----~~~~---~~~----~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  106 (166)
T 2ce2_X           45 VIDGETCLLDILDTA-------GQEEYS----AMRD---QYM----RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS  106 (166)
T ss_dssp             EETTEEEEEEEEECC-------CCSSCC----HHHH---HHH----HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             EECCEEEEEEEEECC-------Cchhhh----HHHH---Hhh----ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence            45554  47889999       744322    1111   112    25789999999874322222 1222223222211


Q ss_pred             hhhcceEEEEEcCCCCC
Q 036659          100 NVFDYMIVVFTGGDELE  116 (300)
Q Consensus       100 ~i~~y~IVlFT~gD~Le  116 (300)
                       .-..++||.|.-|...
T Consensus       107 -~~~p~iiv~nK~Dl~~  122 (166)
T 2ce2_X          107 -DDVPMVLVGNKSDLAA  122 (166)
T ss_dssp             -SCCCEEEEEECTTCSC
T ss_pred             -CCCcEEEEEEchhhhh
Confidence             1245788889888554

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=94.36  E-value=0.071  Score=42.65  Aligned_cols=123  Identities=11%  Similarity=0.098  Sum_probs=65.1

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ..++|..+.++|||       |..+.....  ....+.... +...+++++++|+... .|  +  ....++..+...  
T Consensus        49 ~~~~~~~~~l~Dt~-------G~~~~~~~~--~~~~~~~~~-~~~~~~~~~i~v~d~~-~~--~--~~~~~~~~~~~~--  111 (188)
T 2wjg_A           49 FEYNGEKFKVVDLP-------GVYSLTANS--IDEIIARDY-IINEKPDLVVNIVDAT-AL--E--RNLYLTLQLMEM--  111 (188)
T ss_dssp             EEETTEEEEEEECC-------CCSCCSSSS--HHHHHHHHH-HHHHCCSEEEEEEEGG-GH--H--HHHHHHHHHHTT--
T ss_pred             EEeCCcEEEEEECC-------CcCcccccc--HHHHHHHHH-HhccCCCEEEEEecch-hH--H--HHHHHHHHHHhc--
Confidence            45779999999999       776553221  111222211 1113578999999876 33  1  122333333221  


Q ss_pred             hcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcCCeEEEEeCCCcc
Q 036659          102 FDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTKD  181 (300)
Q Consensus       102 ~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~R~~~FnNk~~d  181 (300)
                      -.-+|||++.-|.....  .    +    ...++.                           +.+.++-.|+....++  
T Consensus       112 ~~piilv~nK~Dl~~~~--~----~----~~~~~~---------------------------~~~~~~~~~~~~Sa~~--  152 (188)
T 2wjg_A          112 GANLLLALNKMDLAKSL--G----I----EIDVDK---------------------------LEKILGVKVVPLSAAK--  152 (188)
T ss_dssp             TCCEEEEEECHHHHHHT--T----C----CCCHHH---------------------------HHHHHTSCEEECBGGG--
T ss_pred             CCCEEEEEEhhhccccc--c----c----hHHHHH---------------------------HHHHhCCCeEEEEecC--
Confidence            12345555544422110  0    1    122333                           5555566676666443  


Q ss_pred             hhhchHHHHHHHHHHHHHHHHcC
Q 036659          182 EAKRTEQIWKLLSLVNSVAVQND  204 (300)
Q Consensus       182 e~~~~~Qv~eLL~~Ve~mv~~Ng  204 (300)
                          ...|.+|+..|-..+.+..
T Consensus       153 ----~~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          153 ----KMGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             ----TBSHHHHHHHHHHHHTTC-
T ss_pred             ----CCCHHHHHHHHHHHHHhcc
Confidence                2478899998888886654

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=94.33  E-value=0.32  Score=45.57  Aligned_cols=70  Identities=11%  Similarity=0.167  Sum_probs=44.8

Q ss_pred             CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCC-CHHHHHHHHHHHHHhchhhhc
Q 036659           25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSWQTLFGKNVFD  103 (300)
Q Consensus        25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rf-T~EE~~al~~lq~lFG~~i~~  103 (300)
                      .++.+++||||       |-       +...+.....+    .+.+++|||+.+...+ ..+....+..+ ...|.   .
T Consensus        73 ~~~~~~iiDtP-------Gh-------~~~~~~~~~~~----~~~D~~ilVvda~~~~~~~qt~~~~~~~-~~~~~---~  130 (403)
T 3sjy_A           73 FLRRISFIDAP-------GH-------EVLMATMLSGA----ALMDGAILVVAANEPFPQPQTREHFVAL-GIIGV---K  130 (403)
T ss_dssp             EEEEEEEEECC-------CC-------GGGHHHHHHHH----TTCSEEEEEEETTSCSSCHHHHHHHHHH-HHHTC---C
T ss_pred             ccceEEEEECC-------Cc-------HHHHHHHHHHH----hhCCEEEEEEECCCCCCcHHHHHHHHHH-HHcCC---C
Confidence            34899999999       62       22234444444    4789999999998665 33334444333 33343   4


Q ss_pred             ceEEEEEcCCCCC
Q 036659          104 YMIVVFTGGDELE  116 (300)
Q Consensus       104 y~IVlFT~gD~Le  116 (300)
                      ..||+++--|...
T Consensus       131 ~iivviNK~Dl~~  143 (403)
T 3sjy_A          131 NLIIVQNKVDVVS  143 (403)
T ss_dssp             CEEEEEECGGGSC
T ss_pred             CEEEEEECccccc
Confidence            7888888888654

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=94.30  E-value=2  Score=42.07  Aligned_cols=73  Identities=22%  Similarity=0.237  Sum_probs=48.0

Q ss_pred             ceeeCCEEEEEEeCCCCcccCcccC-CCCCCh-----HHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHH
Q 036659           21 TIRIQVVLEKVIDTRWVRHAIARLF-DFSAGS-----KFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQ   94 (300)
Q Consensus        21 t~~~~Gr~v~VIDTP~w~~~~~glf-d~~~~~-----e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq   94 (300)
                      ...++|..+.++|||       |+- ++....     ......+        .+.+++|+|+.+....+.++...++.+ 
T Consensus       285 ~i~~~g~~~~l~DTa-------G~~~~~~~~ve~~gi~~~~~~~--------~~aD~vl~VvD~s~~~s~~~~~il~~l-  348 (482)
T 1xzp_A          285 EIVIRGILFRIVDTA-------GVRSETNDLVERLGIERTLQEI--------EKADIVLFVLDASSPLDEEDRKILERI-  348 (482)
T ss_dssp             EEEETTEEEEEEESS-------CCCSSCCTTCCCCCHHHHHHHH--------HHCSEEEEEEETTSCCCHHHHHHHHHH-
T ss_pred             EEecCCeEEEEEECC-------CccccchhhHHHHHHHHHHHHh--------hcccEEEEEecCCCCCCHHHHHHHHHh-
Confidence            456789999999999       765 433211     1122222        357899999999878888776554332 


Q ss_pred             HHhchhhhcceEEEEEcCCCC
Q 036659           95 TLFGKNVFDYMIVVFTGGDEL  115 (300)
Q Consensus        95 ~lFG~~i~~y~IVlFT~gD~L  115 (300)
                         .   -..+|||++--|-.
T Consensus       349 ---~---~~piivV~NK~DL~  363 (482)
T 1xzp_A          349 ---K---NKRYLVVINKVDVV  363 (482)
T ss_dssp             ---T---TSSEEEEEEECSSC
T ss_pred             ---c---CCCEEEEEECcccc
Confidence               2   24578888877754

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=94.28  E-value=0.43  Score=38.40  Aligned_cols=72  Identities=19%  Similarity=0.019  Sum_probs=38.1

Q ss_pred             EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhch-hhhcc
Q 036659           27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGK-NVFDY  104 (300)
Q Consensus        27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~-~i~~y  104 (300)
                      ..+.++|||       |.-           +..........+.|++|+|+.+..+-|-++ ...+..+....+. ..-..
T Consensus        73 ~~~~l~Dt~-------G~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p  134 (208)
T 2yc2_C           73 VELFLLDTA-------GSD-----------LYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR  134 (208)
T ss_dssp             EEEEEEETT-------TTH-----------HHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCE
T ss_pred             EEEEEEECC-------CcH-----------HHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCc
Confidence            489999999       752           112234445678999999999974333222 1222223222220 01235


Q ss_pred             eEEEEEcCCCCC
Q 036659          105 MIVVFTGGDELE  116 (300)
Q Consensus       105 ~IVlFT~gD~Le  116 (300)
                      +|||+|.-|-..
T Consensus       135 iilv~nK~Dl~~  146 (208)
T 2yc2_C          135 AVLVANKTDLPP  146 (208)
T ss_dssp             EEEEEECC----
T ss_pred             EEEEEECcccch
Confidence            677888777544

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=94.19  E-value=1.4  Score=34.79  Aligned_cols=124  Identities=17%  Similarity=0.063  Sum_probs=64.0

Q ss_pred             eeeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhc
Q 036659           22 IRIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFG   98 (300)
Q Consensus        22 ~~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG   98 (300)
                      ..++|  ..+.++|||       |.-+...-           ......+.|++|+|+.+..+-+-+.. ..+..+...++
T Consensus        47 ~~~~~~~~~~~l~Dt~-------G~~~~~~~-----------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~  108 (181)
T 3t5g_A           47 ITVNGQEYHLQLVDTA-------GQDEYSIF-----------PQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG  108 (181)
T ss_dssp             EEETTEEEEEEEEECC-------CCCTTCCC-----------CGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-
T ss_pred             EEECCEEEEEEEEeCC-------CchhhhHH-----------HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence            45667  456899999       64333211           11234578999999999733222221 11122222222


Q ss_pred             hhhhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcCCeEEEEeCC
Q 036659           99 KNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNK  178 (300)
Q Consensus        99 ~~i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~R~~~FnNk  178 (300)
                      .. -.-.|||.|--|-......+.+         .++.                           +.+..+-.|+...-+
T Consensus       109 ~~-~~p~ilv~nK~Dl~~~~~~~~~---------~~~~---------------------------~~~~~~~~~~~~Sa~  151 (181)
T 3t5g_A          109 KV-QIPIMLVGNKKDLHMERVISYE---------EGKA---------------------------LAESWNAAFLESSAK  151 (181)
T ss_dssp             ----CCEEEEEECTTCTTTCCSCHH---------HHHH---------------------------HHHHTTCEEEECCTT
T ss_pred             CC-CCCEEEEEECccchhcceecHH---------HHHH---------------------------HHHHhCCcEEEEecC
Confidence            11 1246777787774433211111         1222                           444445556555544


Q ss_pred             CcchhhchHHHHHHHHHHHHHHHHcCCC
Q 036659          179 TKDEAKRTEQIWKLLSLVNSVAVQNDGQ  206 (300)
Q Consensus       179 ~~de~~~~~Qv~eLL~~Ve~mv~~NgG~  206 (300)
                      +      ...|.+|+..+-..+....|.
T Consensus       152 ~------~~~v~~l~~~l~~~~~~~~~~  173 (181)
T 3t5g_A          152 E------NQTAVDVFRRIILEAEKMDGA  173 (181)
T ss_dssp             S------HHHHHHHHHHHHHHHHTC---
T ss_pred             C------CCCHHHHHHHHHHHHHHhcCC
Confidence            3      368999998888877766554

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.12  E-value=1.6  Score=34.86  Aligned_cols=76  Identities=13%  Similarity=0.003  Sum_probs=43.2

Q ss_pred             ceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh
Q 036659           21 TIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN  100 (300)
Q Consensus        21 t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~  100 (300)
                      +..+++..+.++|||       |.-+.....       ..    ...+.|++|+|+.+..+-|-++  +...+..+....
T Consensus        54 ~~~~~~~~~~i~Dt~-------G~~~~~~~~-------~~----~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~  113 (187)
T 1zj6_A           54 EIVINNTRFLMWDIG-------GQESLRSSW-------NT----YYTNTEFVIVVVDSTDRERISV--TREELYKMLAHE  113 (187)
T ss_dssp             EEEETTEEEEEEECC-------C----CGGG-------HH----HHTTCCEEEEEEETTCTTTHHH--HHHHHHHHHTSG
T ss_pred             EEEECCEEEEEEECC-------CCHhHHHHH-------HH----HhcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhch
Confidence            345788999999999       753322111       11    1257899999999985544332  223444443321


Q ss_pred             --hhcceEEEEEcCCCCC
Q 036659          101 --VFDYMIVVFTGGDELE  116 (300)
Q Consensus       101 --i~~y~IVlFT~gD~Le  116 (300)
                        .-...|||.|--|-..
T Consensus       114 ~~~~~piilv~NK~Dl~~  131 (187)
T 1zj6_A          114 DLRKAGLLIFANKQDVKE  131 (187)
T ss_dssp             GGTTCEEEEEEECTTSTT
T ss_pred             hhCCCeEEEEEECCCCcC
Confidence              1235677777777543

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=94.06  E-value=0.77  Score=35.45  Aligned_cols=75  Identities=9%  Similarity=0.034  Sum_probs=43.4

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ...++..+.++|||       |.-+.       .. +   .....++.|++++|+.+..+-|-+  .....+..+.....
T Consensus        39 ~~~~~~~~~i~Dt~-------G~~~~-------~~-~---~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~   98 (164)
T 1r8s_A           39 VEYKNISFTVWDVG-------GQDKI-------RP-L---WRHYFQNTQGLIFVVDSNDRERVN--EAREELMRMLAEDE   98 (164)
T ss_dssp             EECSSCEEEEEECC-------CCGGG-------HH-H---HHHHTTTCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGG
T ss_pred             EEECCEEEEEEEcC-------CChhh-------HH-H---HHHHhccCCEEEEEEECCCHHHHH--HHHHHHHHHHhchh
Confidence            34567899999999       75221       11 1   112346899999999997543322  23345555544321


Q ss_pred             --hcceEEEEEcCCCCC
Q 036659          102 --FDYMIVVFTGGDELE  116 (300)
Q Consensus       102 --~~y~IVlFT~gD~Le  116 (300)
                        -..+|||.|--|-..
T Consensus        99 ~~~~piilv~nK~Dl~~  115 (164)
T 1r8s_A           99 LRDAVLLVFANKQDLPN  115 (164)
T ss_dssp             GTTCEEEEEEECTTSTT
T ss_pred             hcCCeEEEEEECcCCcC
Confidence              124667777666443

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=94.00  E-value=0.074  Score=41.29  Aligned_cols=70  Identities=14%  Similarity=0.021  Sum_probs=36.4

Q ss_pred             EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhchhhhcce
Q 036659           27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFGKNVFDYM  105 (300)
Q Consensus        27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG~~i~~y~  105 (300)
                      ..+.++|||       |.-+...    +   ..    ....+.|++++|+.+..+-+-++. ..+..+...-.+  ---.
T Consensus        55 ~~~~~~Dt~-------G~~~~~~----~---~~----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~~i  114 (170)
T 1z0j_A           55 HKFLIWDTA-------GLERFRA----L---AP----MYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP--SIVV  114 (170)
T ss_dssp             EEEEEEEEC-------CSGGGGG----G---TH----HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TSEE
T ss_pred             EEEEEEcCC-------Cchhhhc----c---cH----hhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCcE
Confidence            578999999       7532111    0   11    112477999999998744333321 222333322111  1235


Q ss_pred             EEEEEcCCCCC
Q 036659          106 IVVFTGGDELE  116 (300)
Q Consensus       106 IVlFT~gD~Le  116 (300)
                      +||.|.-|-..
T Consensus       115 ilv~nK~Dl~~  125 (170)
T 1z0j_A          115 AIAGNKCDLTD  125 (170)
T ss_dssp             EEEEECTTCGG
T ss_pred             EEEEECCcccc
Confidence            56667777543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=94.00  E-value=0.92  Score=36.39  Aligned_cols=70  Identities=16%  Similarity=0.143  Sum_probs=38.2

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh--hc
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV--FD  103 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i--~~  103 (300)
                      +..+.++|||       |.-+....           ......+.|++|+|+.+..+-+-+   .+..+...+-...  -.
T Consensus        70 ~~~~~l~Dt~-------G~~~~~~~-----------~~~~~~~~d~ii~v~d~~~~~s~~---~~~~~~~~i~~~~~~~~  128 (189)
T 2gf9_A           70 RIKLQIWDTA-------GQERYRTI-----------TTAYYRGAMGFLLMYDIANQESFA---AVQDWATQIKTYSWDNA  128 (189)
T ss_dssp             EEEEEEEECC-------SCCSSCCS-----------GGGGGTTCSEEEEEEETTCHHHHH---THHHHHHHHHHHSCTTC
T ss_pred             EEEEEEEeCC-------CcHHHhhh-----------HHHhccCCCEEEEEEECCCHHHHH---HHHHHHHHHHHhcCCCC
Confidence            3478999999       64332211           122345889999999987432222   2222222221111  23


Q ss_pred             ceEEEEEcCCCCC
Q 036659          104 YMIVVFTGGDELE  116 (300)
Q Consensus       104 y~IVlFT~gD~Le  116 (300)
                      .+|||.|--|-..
T Consensus       129 piilv~nK~Dl~~  141 (189)
T 2gf9_A          129 QVILVGNKCDLED  141 (189)
T ss_dssp             EEEEEEECTTCGG
T ss_pred             CEEEEEECccccc
Confidence            4678888777543

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=93.93  E-value=0.32  Score=39.97  Aligned_cols=74  Identities=12%  Similarity=0.055  Sum_probs=47.1

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh----
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV----  101 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i----  101 (300)
                      +..+.++|||       |..+       ....+..-   ..++.|++|+|+.+. .+........+.|..++....    
T Consensus        53 ~~~~~i~Dt~-------G~~~-------~~~~~~~~---~~~~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~  114 (214)
T 2fh5_B           53 GNSLTLIDLP-------GHES-------LRFQLLDR---FKSSARAVVFVVDSA-AFQREVKDVAEFLYQVLIDSMALKN  114 (214)
T ss_dssp             CCEEEEEECC-------CCHH-------HHHHHHHH---HGGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred             ccEEEEEECC-------CChh-------HHHHHHHH---HHhhCCEEEEEEECC-CcCHHHHHHHHHHHHHHhhhhhccc
Confidence            6789999999       7532       22212221   246899999999987 554445666777777765421    


Q ss_pred             hcceEEEEEcCCCCCC
Q 036659          102 FDYMIVVFTGGDELED  117 (300)
Q Consensus       102 ~~y~IVlFT~gD~Le~  117 (300)
                      -..+|||.|--|-...
T Consensus       115 ~~piilv~nK~Dl~~~  130 (214)
T 2fh5_B          115 SPSLLIACNKQDIAMA  130 (214)
T ss_dssp             CCEEEEEEECTTSTTC
T ss_pred             CCCEEEEEECCCCCCc
Confidence            2356777777775543

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=93.87  E-value=0.85  Score=37.12  Aligned_cols=75  Identities=15%  Similarity=0.082  Sum_probs=40.9

Q ss_pred             eeeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhc
Q 036659           22 IRIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFG   98 (300)
Q Consensus        22 ~~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG   98 (300)
                      ..++|.  .+.++|||       |.-+....           ......+.|++|+|+.+..+.|-++. ..+..+....+
T Consensus        50 ~~~~~~~~~~~l~Dt~-------G~~~~~~~-----------~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~  111 (206)
T 2bcg_Y           50 VELDGKTVKLQIWDTA-------GQERFRTI-----------TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT  111 (206)
T ss_dssp             EEETTEEEEEEEECCT-------TTTTTTCC-----------CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC
T ss_pred             EEECCEEEEEEEEeCC-------ChHHHHHH-----------HHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC
Confidence            345664  79999999       64332211           11234578999999999743332221 11222222222


Q ss_pred             hhhhcceEEEEEcCCCCC
Q 036659           99 KNVFDYMIVVFTGGDELE  116 (300)
Q Consensus        99 ~~i~~y~IVlFT~gD~Le  116 (300)
                      .  -...|||+|.-|...
T Consensus       112 ~--~~piilv~nK~Dl~~  127 (206)
T 2bcg_Y          112 S--TVLKLLVGNKCDLKD  127 (206)
T ss_dssp             T--TCEEEEEEECTTCTT
T ss_pred             C--CCCEEEEEECCCCcc
Confidence            2  234577788777544

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=93.87  E-value=0.21  Score=41.17  Aligned_cols=123  Identities=12%  Similarity=0.079  Sum_probs=68.2

Q ss_pred             EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhchhhhcce
Q 036659           27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFGKNVFDYM  105 (300)
Q Consensus        27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG~~i~~y~  105 (300)
                      ..+.++|||       |.-+.......           ...+.|++|+|+.+..+.|.++. ..+..+....+.+  ..+
T Consensus        61 ~~~~l~Dt~-------G~~~~~~~~~~-----------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pi  120 (218)
T 4djt_A           61 IKFNVWDTA-------GQEKKAVLKDV-----------YYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE--API  120 (218)
T ss_dssp             EEEEEEEEC-------SGGGTSCCCHH-----------HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSS--SCE
T ss_pred             EEEEEEecC-------CchhhchHHHH-----------HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCE
Confidence            579999999       64333221111           13478999999999855444332 2223343333322  357


Q ss_pred             EEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcCCeEEEEeCCCcchhhc
Q 036659          106 IVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTKDEAKR  185 (300)
Q Consensus       106 IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~R~~~FnNk~~de~~~  185 (300)
                      |||.|--|-......+.+         ..+.                           +....+-.|+...-++.     
T Consensus       121 ilv~nK~Dl~~~~~~~~~---------~~~~---------------------------~~~~~~~~~~~~Sa~~g-----  159 (218)
T 4djt_A          121 VVCANKIDIKNRQKISKK---------LVME---------------------------VLKGKNYEYFEISAKTA-----  159 (218)
T ss_dssp             EEEEECTTCC----CCHH---------HHHH---------------------------HTTTCCCEEEEEBTTTT-----
T ss_pred             EEEEECCCCccccccCHH---------HHHH---------------------------HHHHcCCcEEEEecCCC-----
Confidence            788887774432111111         1111                           33334446766666543     


Q ss_pred             hHHHHHHHHHHHHHHHHcCCCCCChH
Q 036659          186 TEQIWKLLSLVNSVAVQNDGQPYTDD  211 (300)
Q Consensus       186 ~~Qv~eLL~~Ve~mv~~NgG~~yt~e  211 (300)
                       ..|.+|+..+-..+.++....+++.
T Consensus       160 -~gv~~l~~~l~~~~~~~~~~~~~~~  184 (218)
T 4djt_A          160 -HNFGLPFLHLARIFTGRPDLIFVSN  184 (218)
T ss_dssp             -BTTTHHHHHHHHHHHCCTTCCBCSC
T ss_pred             -CCHHHHHHHHHHHHhcccccccccc
Confidence             3678888888888877766555543

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.83  E-value=1.9  Score=33.89  Aligned_cols=75  Identities=11%  Similarity=0.009  Sum_probs=43.4

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh-
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN-  100 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~-  100 (300)
                      ..+++..+.++|||       |..+....           ......+.|++++|+.+..+-+-++  ....+..+.... 
T Consensus        57 ~~~~~~~~~i~Dt~-------G~~~~~~~-----------~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~  116 (183)
T 1moz_A           57 LSYKNLKLNVWDLG-------GQTSIRPY-----------WRCYYADTAAVIFVVDSTDKDRMST--ASKELHLMLQEEE  116 (183)
T ss_dssp             EEETTEEEEEEEEC-----------CCTT-----------GGGTTTTEEEEEEEEETTCTTTHHH--HHHHHHHHTTSST
T ss_pred             EEECCEEEEEEECC-------CCHhHHHH-----------HHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHcChh
Confidence            45678999999999       76443221           1223468999999999975544332  233444444321 


Q ss_pred             -hhcceEEEEEcCCCCC
Q 036659          101 -VFDYMIVVFTGGDELE  116 (300)
Q Consensus       101 -i~~y~IVlFT~gD~Le  116 (300)
                       .-.-.|||.|--|-..
T Consensus       117 ~~~~piilv~nK~Dl~~  133 (183)
T 1moz_A          117 LQDAALLVFANKQDQPG  133 (183)
T ss_dssp             TSSCEEEEEEECTTSTT
T ss_pred             hCCCeEEEEEECCCCCC
Confidence             1234677777777443

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=93.78  E-value=0.29  Score=38.81  Aligned_cols=71  Identities=6%  Similarity=0.042  Sum_probs=41.2

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhch---hhh
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGK---NVF  102 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~---~i~  102 (300)
                      +..+.++|||       |.-+...        +.   .....+.|++|+|+.+...-+.+....++.+...+-.   ...
T Consensus        73 ~~~~~i~Dt~-------G~~~~~~--------~~---~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~  134 (198)
T 3t1o_A           73 KTRFHLYTVP-------GQVFYNA--------SR---KLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLD  134 (198)
T ss_dssp             EEEEEEEECC-------SCCSCSH--------HH---HHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred             ceEEEEEeCC-------ChHHHHH--------HH---HHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccC
Confidence            4578999999       7433221        11   1124588999999999745555555555555443322   112


Q ss_pred             -cceEEEEEcCCC
Q 036659          103 -DYMIVVFTGGDE  114 (300)
Q Consensus       103 -~y~IVlFT~gD~  114 (300)
                       .-.|||.+--|-
T Consensus       135 ~~piilv~NK~Dl  147 (198)
T 3t1o_A          135 DVPIVIQVNKRDL  147 (198)
T ss_dssp             SSCEEEEEECTTS
T ss_pred             CCCEEEEEEchhc
Confidence             245666666663

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=93.75  E-value=1.3  Score=35.36  Aligned_cols=76  Identities=17%  Similarity=0.143  Sum_probs=40.6

Q ss_pred             eeeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhc
Q 036659           22 IRIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFG   98 (300)
Q Consensus        22 ~~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG   98 (300)
                      ..++|  ..+.++|||       |.-.....       ...+    ..+.|++++|+.+..+-+-++ ...+..+.....
T Consensus        58 ~~~~~~~~~~~i~Dt~-------G~~~~~~~-------~~~~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~  119 (196)
T 3tkl_A           58 IELDGKTIKLQIWDTA-------GQERFRTI-------TSSY----YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS  119 (196)
T ss_dssp             EEETTEEEEEEEEEEC-------CSGGGCTT-------HHHH----HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC
T ss_pred             EEECCEEEEEEEEECC-------CcHhhhhh-------HHHH----HhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC
Confidence            45666  468899999       63222111       1112    257899999999874332222 122222323222


Q ss_pred             hhhhcceEEEEEcCCCCCC
Q 036659           99 KNVFDYMIVVFTGGDELED  117 (300)
Q Consensus        99 ~~i~~y~IVlFT~gD~Le~  117 (300)
                      .  -..+|||.|.-|-...
T Consensus       120 ~--~~p~ilv~nK~Dl~~~  136 (196)
T 3tkl_A          120 E--NVNKLLVGNKCDLTTK  136 (196)
T ss_dssp             T--TCEEEEEEECTTCTTT
T ss_pred             C--CCCEEEEEECcccccc
Confidence            2  2246777787775443

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=93.75  E-value=0.61  Score=36.94  Aligned_cols=72  Identities=13%  Similarity=0.147  Sum_probs=35.0

Q ss_pred             eeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh
Q 036659           23 RIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN  100 (300)
Q Consensus        23 ~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~  100 (300)
                      .++|  ..+.++|||       |.-+..           ........+.|++|+|+.+..+.|-+   .+..+...+-..
T Consensus        51 ~~~~~~~~~~l~Dt~-------G~~~~~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~i~~~  109 (183)
T 2fu5_C           51 ELDGKRIKLQIWDTA-------GQERFR-----------TITTAYYRGAMGIMLVYDITNEKSFD---NIRNWIRNIEEH  109 (183)
T ss_dssp             EETTEEEEEEEEEC---------------------------CCTTTTTCSEEEEEEETTCHHHHH---HHHHHHHHHHHH
T ss_pred             EECCEEEEEEEEcCC-------CChhhh-----------hhHHHHHhcCCEEEEEEECcCHHHHH---HHHHHHHHHHHh
Confidence            4566  678999999       642211           11233456899999999997432222   222222222221


Q ss_pred             h--hcceEEEEEcCCCC
Q 036659          101 V--FDYMIVVFTGGDEL  115 (300)
Q Consensus       101 i--~~y~IVlFT~gD~L  115 (300)
                      .  -.-.|||.|.-|-.
T Consensus       110 ~~~~~piilv~nK~Dl~  126 (183)
T 2fu5_C          110 ASADVEKMILGNKCDVN  126 (183)
T ss_dssp             SCTTCEEEEEEEC--CC
T ss_pred             cCCCCCEEEEEECccCC
Confidence            1  12456777766644

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=93.66  E-value=0.51  Score=37.36  Aligned_cols=74  Identities=19%  Similarity=0.091  Sum_probs=41.1

Q ss_pred             eeeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhc
Q 036659           22 IRIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFG   98 (300)
Q Consensus        22 ~~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG   98 (300)
                      ..++|  ..+.++|||       |.-+.           .........+.|++++|+.+..+-+-++. ..+..+.....
T Consensus        52 ~~~~~~~~~~~l~Dt~-------G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~  113 (186)
T 2bme_A           52 INVGGKYVKLQIWDTA-------GQERF-----------RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS  113 (186)
T ss_dssp             EEETTEEEEEEEEEEC-------CSGGG-----------HHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC
T ss_pred             EEECCEEEEEEEEeCC-------CcHHH-----------HHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC
Confidence            34566  578999999       73211           11223345689999999999743322221 12222233322


Q ss_pred             hhhhcceEEEEEcCCCC
Q 036659           99 KNVFDYMIVVFTGGDEL  115 (300)
Q Consensus        99 ~~i~~y~IVlFT~gD~L  115 (300)
                      .  -...+||+|.-|-.
T Consensus       114 ~--~~piilv~nK~Dl~  128 (186)
T 2bme_A          114 Q--NIVIILCGNKKDLD  128 (186)
T ss_dssp             T--TCEEEEEEECGGGG
T ss_pred             C--CCcEEEEEECcccc
Confidence            2  23467777877744

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.63  E-value=1.3  Score=35.78  Aligned_cols=73  Identities=14%  Similarity=0.117  Sum_probs=40.5

Q ss_pred             eeeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhc
Q 036659           22 IRIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFG   98 (300)
Q Consensus        22 ~~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG   98 (300)
                      ..++|  ..+.++|||       |.-+.....       ..    ..++.|++|+|+.+..+.+-++ ...+..+....+
T Consensus        62 ~~~~~~~~~~~l~Dt~-------G~~~~~~~~-------~~----~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~  123 (213)
T 3cph_A           62 VDINGKKVKLQLWDTA-------GQERFRTIT-------TA----YYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN  123 (213)
T ss_dssp             EEETTEEEEEEEECCT-------TGGGGTCCC-------HH----HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTT
T ss_pred             EEECCEEEEEEEEeCC-------CcHHHHHHH-------HH----HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence            35677  578999999       643322111       11    1257899999999874333222 122333333322


Q ss_pred             hhhhcceEEEEEcCCC
Q 036659           99 KNVFDYMIVVFTGGDE  114 (300)
Q Consensus        99 ~~i~~y~IVlFT~gD~  114 (300)
                      .  -..+|||+|.-|-
T Consensus       124 ~--~~piilv~nK~Dl  137 (213)
T 3cph_A          124 D--EAQLLLVGNKSDM  137 (213)
T ss_dssp             T--CSEEEEEEECTTC
T ss_pred             C--CCCEEEEEECCCC
Confidence            1  2356788887774

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=93.62  E-value=0.54  Score=36.62  Aligned_cols=72  Identities=15%  Similarity=0.134  Sum_probs=38.8

Q ss_pred             eCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhchh
Q 036659           24 IQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFGKN  100 (300)
Q Consensus        24 ~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG~~  100 (300)
                      +++  ..+.++|||       |.-+..       ......+    .+.|++++|+.+..+.+-++. ..+..+...... 
T Consensus        59 ~~~~~~~~~l~Dt~-------G~~~~~-------~~~~~~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-  119 (179)
T 1z0f_A           59 VSGQKIKLQIWDTA-------GQERFR-------AVTRSYY----RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP-  119 (179)
T ss_dssp             ETTEEEEEEEEECT-------TGGGTC-------HHHHHHH----HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT-
T ss_pred             ECCeEEEEEEEECC-------CChHhh-------hhHHHHh----ccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCC-
Confidence            444  478999999       632221       1122222    367999999999744333221 122223333222 


Q ss_pred             hhcceEEEEEcCCCC
Q 036659          101 VFDYMIVVFTGGDEL  115 (300)
Q Consensus       101 i~~y~IVlFT~gD~L  115 (300)
                       -...+||.|.-|-.
T Consensus       120 -~~piilv~nK~Dl~  133 (179)
T 1z0f_A          120 -NTVIILIGNKADLE  133 (179)
T ss_dssp             -TCEEEEEEECTTCG
T ss_pred             -CCcEEEEEECcccc
Confidence             23467778877754

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=93.51  E-value=1.7  Score=33.38  Aligned_cols=72  Identities=13%  Similarity=0.109  Sum_probs=38.5

Q ss_pred             eeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhch
Q 036659           23 RIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGK   99 (300)
Q Consensus        23 ~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~   99 (300)
                      .++|  ..+.++|||       |.-+.....       ..    ...+.|++++|+.+..+.|-++ ...+..+....+.
T Consensus        46 ~~~~~~~~~~l~D~~-------G~~~~~~~~-------~~----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~  107 (170)
T 1g16_A           46 DINGKKVKLQIWDTA-------GQERFRTIT-------TA----YYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND  107 (170)
T ss_dssp             ESSSCEEEEEEECCT-------TGGGTSCCC-------HH----HHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCT
T ss_pred             EECCEEEEEEEEeCC-------CChhhhhhH-------HH----HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence            3455  368889999       643222111       11    1247899999999874333222 1222333333222


Q ss_pred             hhhcceEEEEEcCCC
Q 036659          100 NVFDYMIVVFTGGDE  114 (300)
Q Consensus       100 ~i~~y~IVlFT~gD~  114 (300)
                        -...+||.|.-|-
T Consensus       108 --~~piilv~nK~Dl  120 (170)
T 1g16_A          108 --EAQLLLVGNKSDM  120 (170)
T ss_dssp             --TCEEEEEEECTTC
T ss_pred             --CCcEEEEEECccC
Confidence              2346777787774

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=93.47  E-value=0.27  Score=37.67  Aligned_cols=76  Identities=13%  Similarity=0.039  Sum_probs=39.9

Q ss_pred             eeeCCEE--EEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhc
Q 036659           22 IRIQVVL--EKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFG   98 (300)
Q Consensus        22 ~~~~Gr~--v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG   98 (300)
                      ..++|..  +.++|||       |.-+.    ..+..   ..    ..+.|++++|+.+..+-+-++ ...+..+.....
T Consensus        44 ~~~~~~~~~~~l~D~~-------G~~~~----~~~~~---~~----~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~  105 (167)
T 1kao_A           44 IEVDSSPSVLEILDTA-------GTEQF----ASMRD---LY----IKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR  105 (167)
T ss_dssp             EEETTEEEEEEEEECC-------CTTCC----HHHHH---HH----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT
T ss_pred             EEECCEEEEEEEEECC-------Cchhh----HHHHH---HH----hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC
Confidence            3456654  8899999       73221    11111   11    235689999999874333222 122222333322


Q ss_pred             hhhhcceEEEEEcCCCCC
Q 036659           99 KNVFDYMIVVFTGGDELE  116 (300)
Q Consensus        99 ~~i~~y~IVlFT~gD~Le  116 (300)
                      . .-..++||+|.-|...
T Consensus       106 ~-~~~piilv~nK~Dl~~  122 (167)
T 1kao_A          106 Y-EKVPVILVGNKVDLES  122 (167)
T ss_dssp             T-SCCCEEEEEECGGGGG
T ss_pred             C-CCCCEEEEEECCcccc
Confidence            1 1235788888877543

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=93.46  E-value=0.2  Score=40.23  Aligned_cols=78  Identities=3%  Similarity=-0.084  Sum_probs=46.1

Q ss_pred             CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh---
Q 036659           25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV---  101 (300)
Q Consensus        25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i---  101 (300)
                      .+..+.++|||       |.-+........   +...    .+++|++|+|+.+. .-...-.....++..+++...   
T Consensus        89 ~~~~~~l~Dt~-------G~~~~~~~~~~~---~~~~----~~~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~  153 (193)
T 2ged_A           89 DGSGVTLVDFP-------GHVKLRYKLSDY---LKTR----AKFVKGLIFMVDST-VDPKKLTTTAEFLVDILSITESSC  153 (193)
T ss_dssp             CCTTCSEEEET-------TCCBSSCCHHHH---HHHH----GGGEEEEEEEEETT-CCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cCCeEEEEECC-------CCchHHHHHHHH---HHhh----cccCCEEEEEEECC-CCchhHHHHHHHHHHHHhhhhhcc
Confidence            46678999999       765443222111   1111    25689999999985 222223344455666655432   


Q ss_pred             --hcceEEEEEcCCCCCC
Q 036659          102 --FDYMIVVFTGGDELED  117 (300)
Q Consensus       102 --~~y~IVlFT~gD~Le~  117 (300)
                        -..++||+|.-|....
T Consensus       154 ~~~~p~ilv~nK~Dl~~~  171 (193)
T 2ged_A          154 ENGIDILIACNKSELFTA  171 (193)
T ss_dssp             TTCCCEEEEEECTTSTTC
T ss_pred             ccCCCEEEEEEchHhcCC
Confidence              2457888888886654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=93.42  E-value=0.22  Score=47.16  Aligned_cols=145  Identities=13%  Similarity=0.128  Sum_probs=73.3

Q ss_pred             CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCC-C-CChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHH
Q 036659           11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDF-S-AGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEA   88 (300)
Q Consensus        11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~-~-~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~   88 (300)
                      +.|...... ...++|+.+.++||||.+....-.++. . ...-..    ...+    .+.+++++|+.+...+|.++..
T Consensus       213 gtT~d~~~~-~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~----~~~i----~~ad~vllv~d~~~~~~~~~~~  283 (439)
T 1mky_A          213 GTTRDPVDD-EVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV----VDSI----EKADVVVIVLDATQGITRQDQR  283 (439)
T ss_dssp             ------CCE-EEEETTEEEEESSCSCC-----------CCSCCHHH----HHHH----HHCSEEEEEEETTTCCCHHHHH
T ss_pred             CCcCCceEE-EEEECCEEEEEEECCCCccccccchhhHHHHHHHHH----HHHH----hhCCEEEEEEeCCCCCCHHHHH
Confidence            344434333 357899999999999442111000000 0 000011    1112    2468999999987788888765


Q ss_pred             HHHHHHHHhchhhhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhc
Q 036659           89 ALHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLC  168 (300)
Q Consensus        89 al~~lq~lFG~~i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C  168 (300)
                      ....+.. .|    .-+|||++--|.++....+++++...     +..                           -+..+
T Consensus       284 i~~~l~~-~~----~~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~---------------------------~~~~~  326 (439)
T 1mky_A          284 MAGLMER-RG----RASVVVFNKWDLVVHREKRYDEFTKL-----FRE---------------------------KLYFI  326 (439)
T ss_dssp             HHHHHHH-TT----CEEEEEEECGGGSTTGGGCHHHHHHH-----HHH---------------------------HCGGG
T ss_pred             HHHHHHH-cC----CCEEEEEECccCCCchhhHHHHHHHH-----HHH---------------------------HhccC
Confidence            5544432 22    45778888777665432334444321     111                           11122


Q ss_pred             CC-eEEEEeCCCcchhhchHHHHHHHHHHHHHHHHcCCCC
Q 036659          169 DN-RCVLFDNKTKDEAKRTEQIWKLLSLVNSVAVQNDGQP  207 (300)
Q Consensus       169 ~~-R~~~FnNk~~de~~~~~Qv~eLL~~Ve~mv~~NgG~~  207 (300)
                      ++ .++...-++      ...|.+|++.|..+..+.....
T Consensus       327 ~~~~~~~~SA~~------g~gv~~l~~~i~~~~~~~~~~i  360 (439)
T 1mky_A          327 DYSPLIFTSADK------GWNIDRMIDAMNLAYASYTTKV  360 (439)
T ss_dssp             TTSCEEECBTTT------TBSHHHHHHHHHHHHHHHTCCC
T ss_pred             CCCcEEEEECCC------CCCHHHHHHHHHHHHHhhcccC
Confidence            22 344333333      2478899999988887765543

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=93.41  E-value=1.9  Score=33.50  Aligned_cols=72  Identities=15%  Similarity=-0.008  Sum_probs=36.4

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhch--hhh
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFGK--NVF  102 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG~--~i~  102 (300)
                      ...+.++|||       |.-+.           .........+.|++++|+.+..+-+-++. ..+..+....+.  ..-
T Consensus        57 ~~~~~l~Dt~-------G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~  118 (182)
T 1ky3_A           57 VATMQVWDTA-------GQERF-----------QSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPET  118 (182)
T ss_dssp             CEEEEEECCC----------------------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTT
T ss_pred             EEEEEEEECC-------CChHh-----------hhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCC
Confidence            3588999999       62211           11122345688999999998743322221 122223322221  012


Q ss_pred             cceEEEEEcCCCC
Q 036659          103 DYMIVVFTGGDEL  115 (300)
Q Consensus       103 ~y~IVlFT~gD~L  115 (300)
                      ..++||.|.-|-.
T Consensus       119 ~p~ilv~nK~Dl~  131 (182)
T 1ky3_A          119 FPFVILGNKIDAE  131 (182)
T ss_dssp             CCEEEEEECTTSC
T ss_pred             CcEEEEEECCccc
Confidence            3567888877754

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=93.31  E-value=0.68  Score=38.09  Aligned_cols=41  Identities=15%  Similarity=0.183  Sum_probs=26.1

Q ss_pred             eeeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCC
Q 036659           22 IRIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRS   80 (300)
Q Consensus        22 ~~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~   80 (300)
                      ..++|  ..+.++|||       |.-+.       .......    ..+.|++++|+.+..
T Consensus        71 ~~~~~~~~~l~i~Dt~-------G~~~~-------~~~~~~~----~~~~d~iilv~D~~~  113 (201)
T 2hup_A           71 LEIQGKRVKLQIWDTA-------GQERF-------RTITQSY----YRSANGAILAYDITK  113 (201)
T ss_dssp             EEETTEEEEEEEECCT-------TCGGG-------HHHHHHH----HTTCSEEEEEEETTB
T ss_pred             EEECCEEEEEEEEECC-------CcHhH-------HHHHHHH----HhhCCEEEEEEECCC
Confidence            34566  488999999       74221       1111222    347899999999873

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=93.28  E-value=0.42  Score=38.07  Aligned_cols=68  Identities=16%  Similarity=-0.006  Sum_probs=36.4

Q ss_pred             EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh--hhcc
Q 036659           27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN--VFDY  104 (300)
Q Consensus        27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~--i~~y  104 (300)
                      ..+.++|||       |.-+....       ....    .++.|++|+|+.+..+.+-++  ...++..+....  .-..
T Consensus        64 ~~~~i~Dt~-------G~~~~~~~-------~~~~----~~~~d~ii~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~p  123 (195)
T 1x3s_A           64 AKLAIWDTA-------GQERFRTL-------TPSY----YRGAQGVILVYDVTRRDTFVK--LDNWLNELETYCTRNDIV  123 (195)
T ss_dssp             EEEEEEEEC-------SSGGGCCS-------HHHH----HTTCCEEEEEEETTCHHHHHT--HHHHHHHHTTCCSCSCCE
T ss_pred             EEEEEEeCC-------Cchhhhhh-------hHHH----hccCCEEEEEEECcCHHHHHH--HHHHHHHHHHhcCcCCCc
Confidence            578899999       64332221       1111    247899999999874322222  112223332211  1234


Q ss_pred             eEEEEEcCCC
Q 036659          105 MIVVFTGGDE  114 (300)
Q Consensus       105 ~IVlFT~gD~  114 (300)
                      .|||+|.-|.
T Consensus       124 ~ilv~nK~Dl  133 (195)
T 1x3s_A          124 NMLVGNKIDK  133 (195)
T ss_dssp             EEEEEECTTS
T ss_pred             EEEEEECCcC
Confidence            6778887775

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=93.25  E-value=0.4  Score=36.99  Aligned_cols=74  Identities=20%  Similarity=0.062  Sum_probs=39.8

Q ss_pred             eeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh
Q 036659           23 RIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN  100 (300)
Q Consensus        23 ~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~  100 (300)
                      .+++.  .+.++|||       |.-+.....       ..    ...+.|++++|+.+..+.|-++  ...++..+....
T Consensus        48 ~~~~~~~~~~l~Dt~-------G~~~~~~~~-------~~----~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~  107 (168)
T 1z2a_A           48 QVNDEDVRLMLWDTA-------GQEEFDAIT-------KA----YYRGAQACVLVFSTTDRESFEA--ISSWREKVVAEV  107 (168)
T ss_dssp             EETTEEEEEEEECCT-------TGGGTTCCC-------HH----HHTTCCEEEEEEETTCHHHHHT--HHHHHHHHHHHH
T ss_pred             EECCEEEEEEEEcCC-------CcHhHHHHH-------HH----HhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhC
Confidence            34553  78899999       643222111       11    1247899999999974332222  112222222211


Q ss_pred             hhcceEEEEEcCCCCC
Q 036659          101 VFDYMIVVFTGGDELE  116 (300)
Q Consensus       101 i~~y~IVlFT~gD~Le  116 (300)
                      .-..++||+|.-|-..
T Consensus       108 ~~~piilv~nK~Dl~~  123 (168)
T 1z2a_A          108 GDIPTALVQNKIDLLD  123 (168)
T ss_dssp             CSCCEEEEEECGGGGG
T ss_pred             CCCCEEEEEECcccCc
Confidence            2346788888888554

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=93.25  E-value=0.34  Score=37.13  Aligned_cols=75  Identities=13%  Similarity=-0.015  Sum_probs=39.3

Q ss_pred             eeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhch
Q 036659           23 RIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGK   99 (300)
Q Consensus        23 ~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~   99 (300)
                      .++|.  .+.++|||       |.-+.    ..+   ...+    ..+.+++++|+.+..+-+-++ ...+..+......
T Consensus        46 ~~~~~~~~~~l~D~~-------G~~~~----~~~---~~~~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~  107 (168)
T 1u8z_A           46 VLDGEEVQIDILDTA-------GQEDY----AAI---RDNY----FRSGEGFLCVFSITEMESFAATADFREQILRVKED  107 (168)
T ss_dssp             EETTEEEEEEEEECC-------C---C----HHH---HHHH----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             EECCEEEEEEEEECC-------Ccchh----HHH---HHHH----hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence            45664  78999999       74321    111   1112    236789999999874322222 1222233333221


Q ss_pred             hhhcceEEEEEcCCCCC
Q 036659          100 NVFDYMIVVFTGGDELE  116 (300)
Q Consensus       100 ~i~~y~IVlFT~gD~Le  116 (300)
                       .-..++||.|.-|...
T Consensus       108 -~~~piilv~nK~Dl~~  123 (168)
T 1u8z_A          108 -ENVPFLLVGNKSDLED  123 (168)
T ss_dssp             -TTSCEEEEEECGGGGG
T ss_pred             -CCCcEEEEEECccccc
Confidence             1245788888877543

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=93.23  E-value=0.16  Score=53.19  Aligned_cols=88  Identities=14%  Similarity=0.092  Sum_probs=55.7

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCC--ChHHHHHHHHHhhc-cCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhchhh
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSA--GSKFVGKEIVTCIG-MAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFGKNV  101 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~--~~e~v~kEI~~ci~-l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG~~i  101 (300)
                      +..+++||||       |++....  .++++...+.+.+. ......+++|+|+.....++.++. ..+..+.    + .
T Consensus       149 ~~qL~LVDTP-------Gi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~----~-~  216 (772)
T 3zvr_A          149 VLNLTLVDLP-------GMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD----P-Q  216 (772)
T ss_dssp             CCSEEEEECC-------CCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHC----T-T
T ss_pred             CCceEEEECC-------CcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHH----h-c
Confidence            4568999999       8887432  24444444444433 223567899999998867787775 3443332    2 2


Q ss_pred             hcceEEEEEcCCCCCCCcccHHHhh
Q 036659          102 FDYMIVVFTGGDELEDNDETLEDYL  126 (300)
Q Consensus       102 ~~y~IVlFT~gD~Le~~~~tledyl  126 (300)
                      -..+|+|+|--|.+... ....+.+
T Consensus       217 g~pvIlVlNKiDlv~~~-~~~~~il  240 (772)
T 3zvr_A          217 GQRTIGVITKLDLMDEG-TDARDVL  240 (772)
T ss_dssp             CSSEEEEEECTTSSCTT-CCSHHHH
T ss_pred             CCCEEEEEeCcccCCcc-hhhHHHH
Confidence            35799999999988653 2334444

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=93.22  E-value=0.73  Score=37.34  Aligned_cols=69  Identities=16%  Similarity=0.206  Sum_probs=37.3

Q ss_pred             EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh--hcc
Q 036659           27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV--FDY  104 (300)
Q Consensus        27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i--~~y  104 (300)
                      ..+.++|||       |.-+.       .. +   ......+.|++|+|+.+..+-+-   ..+..+...+-...  -..
T Consensus        57 ~~~~l~Dt~-------G~~~~-------~~-~---~~~~~~~~d~ii~v~d~~~~~s~---~~~~~~~~~i~~~~~~~~p  115 (203)
T 1zbd_A           57 IKLQIWDTA-------GLERY-------RT-I---TTAYYRGAMGFILMYDITNEESF---NAVQDWSTQIKTYSWDNAQ  115 (203)
T ss_dssp             EEEEEEEEC-------CSGGG-------HH-H---HHTTGGGCSEEEEEEETTCHHHH---HHHHHHHHHHHHHSCSSCE
T ss_pred             EEEEEEECC-------Cchhh-------cc-h---HHHhhcCCCEEEEEEECcCHHHH---HHHHHHHHHHHHhcCCCCC
Confidence            478999999       75221       11 1   22234588999999998743222   22222222221111  234


Q ss_pred             eEEEEEcCCCCC
Q 036659          105 MIVVFTGGDELE  116 (300)
Q Consensus       105 ~IVlFT~gD~Le  116 (300)
                      +|||.|.-|-..
T Consensus       116 iilv~nK~Dl~~  127 (203)
T 1zbd_A          116 VLLVGNKCDMED  127 (203)
T ss_dssp             EEEEEECTTCTT
T ss_pred             EEEEEECcccCc
Confidence            677788777543

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=93.21  E-value=0.92  Score=35.56  Aligned_cols=76  Identities=13%  Similarity=0.017  Sum_probs=40.4

Q ss_pred             eeeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhc
Q 036659           22 IRIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFG   98 (300)
Q Consensus        22 ~~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG   98 (300)
                      ..+++.  .+.++|||       |.-+.    ..+   ....+    .+.|++++|+.+..+-+-++ ...+..+.....
T Consensus        59 ~~~~~~~~~~~l~Dt~-------G~~~~----~~~---~~~~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~  120 (187)
T 2a9k_A           59 VVLDGEEVQIDILDTA-------GQEDY----AAI---RDNYF----RSGEGFLCVFSITEMESFAATADFREQILRVKE  120 (187)
T ss_dssp             EEETTEEEEEEEEECC-------CTTCC----HHH---HHHHH----HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC
T ss_pred             EEECCEEEEEEEEECC-------CCccc----HHH---HHHHh----ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC
Confidence            345664  78899999       74322    111   11122    36789999999874322221 122233333322


Q ss_pred             hhhhcceEEEEEcCCCCC
Q 036659           99 KNVFDYMIVVFTGGDELE  116 (300)
Q Consensus        99 ~~i~~y~IVlFT~gD~Le  116 (300)
                      . .-...|||.|.-|-..
T Consensus       121 ~-~~~piilv~nK~Dl~~  137 (187)
T 2a9k_A          121 D-ENVPFLLVGNKSDLED  137 (187)
T ss_dssp             C-TTCCEEEEEECGGGGG
T ss_pred             C-CCCCEEEEEECccccc
Confidence            1 1235688888777543

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=93.19  E-value=0.86  Score=37.41  Aligned_cols=69  Identities=13%  Similarity=0.028  Sum_probs=37.5

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHH-HHHHhchh--hh
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHS-WQTLFGKN--VF  102 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~-lq~lFG~~--i~  102 (300)
                      +..+.++|||       |.       +........    ...+.|++|+|+.+..+.+   ...+.. +..+....  .-
T Consensus        83 ~~~l~l~Dt~-------G~-------~~~~~~~~~----~~~~~d~iilV~D~~~~~s---~~~~~~~l~~i~~~~~~~~  141 (217)
T 2f7s_A           83 KVHLQLWDTA-------GQ-------ERFRSLTTA----FFRDAMGFLLMFDLTSQQS---FLNVRNWMSQLQANAYCEN  141 (217)
T ss_dssp             EEEEEEEEEE-------SH-------HHHHHHHHH----HHTTCCEEEEEEETTCHHH---HHHHHHHHHTCCCCCTTTC
T ss_pred             eEEEEEEECC-------Cc-------HhHHhHHHH----HhcCCCEEEEEEECcCHHH---HHHHHHHHHHHHHhcCcCC
Confidence            4579999999       62       222222222    2357899999999873322   222333 33332211  12


Q ss_pred             cceEEEEEcCCCC
Q 036659          103 DYMIVVFTGGDEL  115 (300)
Q Consensus       103 ~y~IVlFT~gD~L  115 (300)
                      ..+|||+|--|..
T Consensus       142 ~piilV~NK~Dl~  154 (217)
T 2f7s_A          142 PDIVLIGNKADLP  154 (217)
T ss_dssp             CEEEEEEECTTCG
T ss_pred             CCEEEEEECCccc
Confidence            3467777777744

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=93.10  E-value=0.69  Score=43.81  Aligned_cols=71  Identities=11%  Similarity=0.074  Sum_probs=48.1

Q ss_pred             eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659           24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD  103 (300)
Q Consensus        24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~  103 (300)
                      .+++.+++||||       |.-+      + .+.+...+    .+.|++|||+.+....+.+....+..+. .+|   ..
T Consensus       101 ~~~~~~~iiDtp-------Gh~~------f-~~~~~~~~----~~aD~~ilVvDa~~g~~~qt~~~l~~~~-~~~---~~  158 (434)
T 1zun_B          101 TAKRKFIIADTP-------GHEQ------Y-TRNMATGA----STCDLAIILVDARYGVQTQTRRHSYIAS-LLG---IK  158 (434)
T ss_dssp             CSSEEEEEEECC-------CSGG------G-HHHHHHHH----TTCSEEEEEEETTTCSCHHHHHHHHHHH-HTT---CC
T ss_pred             cCCceEEEEECC-------ChHH------H-HHHHHHHH----hhCCEEEEEEECCCCCcHHHHHHHHHHH-HcC---CC
Confidence            468899999999       7432      1 23344433    5889999999998777766665555443 333   34


Q ss_pred             ceEEEEEcCCCCC
Q 036659          104 YMIVVFTGGDELE  116 (300)
Q Consensus       104 y~IVlFT~gD~Le  116 (300)
                      +.||+++--|...
T Consensus       159 ~iIvviNK~Dl~~  171 (434)
T 1zun_B          159 HIVVAINKMDLNG  171 (434)
T ss_dssp             EEEEEEECTTTTT
T ss_pred             eEEEEEEcCcCCc
Confidence            6888888888654

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=93.01  E-value=0.5  Score=38.02  Aligned_cols=75  Identities=12%  Similarity=0.020  Sum_probs=43.3

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh-
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN-  100 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~-  100 (300)
                      ..++|..+.++|||       |.-+...           .......+.|++|+|+.+..+.+-+  .+...+..++... 
T Consensus        62 ~~~~~~~~~l~Dt~-------G~~~~~~-----------~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~  121 (190)
T 2h57_A           62 FKSSSLSFTVFDMS-------GQGRYRN-----------LWEHYYKEGQAIIFVIDSSDRLRMV--VAKEELDTLLNHPD  121 (190)
T ss_dssp             EECSSCEEEEEEEC-------CSTTTGG-----------GGGGGGGGCSEEEEEEETTCHHHHH--HHHHHHHHHHHSTT
T ss_pred             EEECCEEEEEEECC-------CCHHHHH-----------HHHHHHhcCCEEEEEEECCCHHHHH--HHHHHHHHHHhChh
Confidence            45678999999999       6432211           1122335789999999987432211  2223344443322 


Q ss_pred             ---hhcceEEEEEcCCCCC
Q 036659          101 ---VFDYMIVVFTGGDELE  116 (300)
Q Consensus       101 ---i~~y~IVlFT~gD~Le  116 (300)
                         .-..+|||+|--|-..
T Consensus       122 ~~~~~~piilv~nK~Dl~~  140 (190)
T 2h57_A          122 IKHRRIPILFFANKMDLRD  140 (190)
T ss_dssp             TTTSCCCEEEEEECTTSTT
T ss_pred             hccCCCeEEEEEeCcCccc
Confidence               1235778888777554

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.95  E-value=0.19  Score=40.40  Aligned_cols=72  Identities=24%  Similarity=0.180  Sum_probs=40.9

Q ss_pred             EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhchhhhcce
Q 036659           27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGKNVFDYM  105 (300)
Q Consensus        27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~~i~~y~  105 (300)
                      ..+.++|||       |.-+..    .+..   ..    .++.|++|+|+.+..+-+-++ ...+..+..+.+...-..+
T Consensus        56 ~~~~l~Dt~-------G~~~~~----~~~~---~~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~pi  117 (199)
T 2gf0_A           56 CTLQITDTT-------GSHQFP----AMQR---LS----ISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPV  117 (199)
T ss_dssp             EEEEEEECC-------GGGSCH----HHHH---HH----HHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCE
T ss_pred             EEEEEEeCC-------ChHHhH----HHHH---Hh----hccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence            378999999       743321    1111   11    235799999999974333222 2233445454443223457


Q ss_pred             EEEEEcCCCCC
Q 036659          106 IVVFTGGDELE  116 (300)
Q Consensus       106 IVlFT~gD~Le  116 (300)
                      |||+|--|...
T Consensus       118 ilv~nK~Dl~~  128 (199)
T 2gf0_A          118 MLVGNKCDETQ  128 (199)
T ss_dssp             EEEEECTTCSS
T ss_pred             EEEEECccCCc
Confidence            88888888543

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=92.88  E-value=0.034  Score=52.11  Aligned_cols=83  Identities=12%  Similarity=0.061  Sum_probs=45.3

Q ss_pred             eeCC-EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCC---CCCHHHHHHHHHHHHHhc
Q 036659           23 RIQV-VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRS---RFSQEEEAALHSWQTLFG   98 (300)
Q Consensus        23 ~~~G-r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~---rfT~EE~~al~~lq~lFG   98 (300)
                      .+++ ..+.++|||       |+.+....-..+..+..+.+    ...+++|+|+.+.+   +-+-++...+......++
T Consensus       201 ~~~~~~~~~l~DtP-------G~i~~a~~~~~l~~~fl~~i----~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~  269 (342)
T 1lnz_A          201 ETDDGRSFVMADLP-------GLIEGAHQGVGLGHQFLRHI----ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYN  269 (342)
T ss_dssp             ECSSSCEEEEEEHH-------HHHHHTTCTTTTHHHHHHHH----HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSC
T ss_pred             EeCCCceEEEecCC-------CCcccccccchhHHHHHHHH----HhccEEEEEEECCcccccChHHHHHHHHHHHHHhh
Confidence            3443 899999999       76431111111222222222    23589999999964   444444443333333344


Q ss_pred             hh-hhcceEEEEEcCCCCC
Q 036659           99 KN-VFDYMIVVFTGGDELE  116 (300)
Q Consensus        99 ~~-i~~y~IVlFT~gD~Le  116 (300)
                      +. .-.-+|||+|--|.+.
T Consensus       270 ~~l~~~p~ilV~NK~Dl~~  288 (342)
T 1lnz_A          270 LRLTERPQIIVANKMDMPE  288 (342)
T ss_dssp             SSTTTSCBCBEEECTTSTT
T ss_pred             hhhcCCCEEEEEECccCCC
Confidence            32 2345788888888654

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=92.84  E-value=2.2  Score=33.68  Aligned_cols=48  Identities=21%  Similarity=0.131  Sum_probs=24.9

Q ss_pred             CCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhchhhhcceEEEEEcCCCCC
Q 036659           68 GIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGKNVFDYMIVVFTGGDELE  116 (300)
Q Consensus        68 GpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~~i~~y~IVlFT~gD~Le  116 (300)
                      +.|++++|+.+..+-|-+. ...+..+....... -.-+|||.|.-|-..
T Consensus        89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~  137 (183)
T 3kkq_A           89 TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRE-SFPMILVANKVDLMH  137 (183)
T ss_dssp             HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSS-CCCEEEEEECTTCST
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC-CCcEEEEEECCCchh
Confidence            5799999999974322221 11122222222111 124677888777544

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=92.74  E-value=0.56  Score=46.39  Aligned_cols=71  Identities=11%  Similarity=0.129  Sum_probs=47.5

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ..+++..+++||||       |..|+..       +..+++.    ..+++|+|+......+.+....+..+.. .|   
T Consensus        77 ~~~~~~~i~liDTP-------G~~df~~-------~~~~~l~----~aD~allVvDa~~g~~~~t~~~~~~~~~-~~---  134 (528)
T 3tr5_A           77 FPYKDYLINLLDTP-------GHADFTE-------DTYRTLT----AVDSALMVIDAAKGVEPRTIKLMEVCRL-RH---  134 (528)
T ss_dssp             EEETTEEEEEECCC-------CSTTCCH-------HHHHGGG----GCSEEEEEEETTTCSCHHHHHHHHHHHT-TT---
T ss_pred             EEeCCEEEEEEECC-------CchhHHH-------HHHHHHH----hCCEEEEEEeCCCCCCHHHHHHHHHHHH-cC---
Confidence            45789999999999       8766542       3444443    6789999999987788777766654432 12   


Q ss_pred             hcceEEEEEcCCCC
Q 036659          102 FDYMIVVFTGGDEL  115 (300)
Q Consensus       102 ~~y~IVlFT~gD~L  115 (300)
                       .-+||+.+--|..
T Consensus       135 -iPiivviNK~Dl~  147 (528)
T 3tr5_A          135 -TPIMTFINKMDRD  147 (528)
T ss_dssp             -CCEEEEEECTTSC
T ss_pred             -CCEEEEEeCCCCc
Confidence             2355666655654

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=92.72  E-value=1.1  Score=36.57  Aligned_cols=119  Identities=13%  Similarity=0.049  Sum_probs=62.5

Q ss_pred             CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh--hh
Q 036659           25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN--VF  102 (300)
Q Consensus        25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~--i~  102 (300)
                      .+..+.++|||       |.-+...-           ......+.+++++|+.+..+-+-+.  ...++..+....  .-
T Consensus        70 ~~~~~~l~Dt~-------G~~~~~~~-----------~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~  129 (201)
T 3oes_A           70 DEFHLHLVDTA-------GQDEYSIL-----------PYSFIIGVHGYVLVYSVTSLHSFQV--IESLYQKLHEGHGKTR  129 (201)
T ss_dssp             -CEEEEEEEEC-------CCCTTCCC-----------CGGGTTTCCEEEEEEETTCHHHHHH--HHHHHHHHHC-----C
T ss_pred             EEEEEEEEECC-------CccchHHH-----------HHHHHhcCCEEEEEEeCCCHHHHHH--HHHHHHHHHHhcCCCC
Confidence            35678999999       64332211           1223468899999999973322221  122333332221  11


Q ss_pred             cceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcCCeEEEEeCCCcch
Q 036659          103 DYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTKDE  182 (300)
Q Consensus       103 ~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~R~~~FnNk~~de  182 (300)
                      .-+|||.|--|-......+.+         ..+.                           +....+-.|+....++   
T Consensus       130 ~piilv~nK~Dl~~~~~v~~~---------~~~~---------------------------~~~~~~~~~~~~Sa~~---  170 (201)
T 3oes_A          130 VPVVLVGNKADLSPEREVQAV---------EGKK---------------------------LAESWGATFMESSARE---  170 (201)
T ss_dssp             CCEEEEEECTTCGGGCCSCHH---------HHHH---------------------------HHHHHTCEEEECCTTC---
T ss_pred             CCEEEEEECccCccccccCHH---------HHHH---------------------------HHHHhCCeEEEEeCCC---
Confidence            246778887775433211111         1122                           4444555565555443   


Q ss_pred             hhchHHHHHHHHHHHHHHHHcCC
Q 036659          183 AKRTEQIWKLLSLVNSVAVQNDG  205 (300)
Q Consensus       183 ~~~~~Qv~eLL~~Ve~mv~~NgG  205 (300)
                         ...|.+|+..|-..+.+..+
T Consensus       171 ---~~~v~~l~~~l~~~i~~~~~  190 (201)
T 3oes_A          171 ---NQLTQGIFTKVIQEIARVEN  190 (201)
T ss_dssp             ---HHHHHHHHHHHHHHHHHC--
T ss_pred             ---CCCHHHHHHHHHHHHHhhhh
Confidence               36899999888777766544

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=92.70  E-value=1.6  Score=35.09  Aligned_cols=76  Identities=13%  Similarity=0.020  Sum_probs=39.8

Q ss_pred             eeeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhc
Q 036659           22 IRIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFG   98 (300)
Q Consensus        22 ~~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG   98 (300)
                      ..++|.  .+.++|||       |.-+.    ..+..   ..    ..+.+++++|+.+..+-+-+. ...+..+.....
T Consensus        55 ~~~~~~~~~~~l~Dt~-------G~~~~----~~~~~---~~----~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~  116 (206)
T 2bov_A           55 VVLDGEEVQIDILDTA-------GQEDY----AAIRD---NY----FRSGEGFLCVFSITEMESFAATADFREQILRVKE  116 (206)
T ss_dssp             EEETTEEEEEEEEECC-------CTTCC----HHHHH---HH----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT
T ss_pred             EEECCEEEEEEEEcCC-------Chhhh----HHHHH---HH----HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence            345664  78899999       74332    11111   11    236789999999874322211 112222222221


Q ss_pred             hhhhcceEEEEEcCCCCC
Q 036659           99 KNVFDYMIVVFTGGDELE  116 (300)
Q Consensus        99 ~~i~~y~IVlFT~gD~Le  116 (300)
                      . .-...|||.|.-|-..
T Consensus       117 ~-~~~piilv~nK~Dl~~  133 (206)
T 2bov_A          117 D-ENVPFLLVGNKSDLED  133 (206)
T ss_dssp             C-SCCCEEEEEECTTCGG
T ss_pred             C-CCCCEEEEEeccCccc
Confidence            1 1235688888877543

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=92.63  E-value=0.18  Score=39.05  Aligned_cols=72  Identities=24%  Similarity=0.195  Sum_probs=40.5

Q ss_pred             EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhchhhhcce
Q 036659           27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGKNVFDYM  105 (300)
Q Consensus        27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~~i~~y~  105 (300)
                      ..+.++|||       |.-+..    .+   ....+    ++.|++++|+.+..+-+-++ ...+..+....+...-..+
T Consensus        51 ~~~~~~Dt~-------G~~~~~----~~---~~~~~----~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pi  112 (172)
T 2erx_A           51 CTLQITDTT-------GSHQFP----AM---QRLSI----SKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPI  112 (172)
T ss_dssp             EEEEEEECC-------SCSSCH----HH---HHHHH----HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCE
T ss_pred             EEEEEEECC-------CchhhH----HH---HHHhc----ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCE
Confidence            368999999       754321    11   11112    35789999999974433332 2334445554443223457


Q ss_pred             EEEEEcCCCCC
Q 036659          106 IVVFTGGDELE  116 (300)
Q Consensus       106 IVlFT~gD~Le  116 (300)
                      +||.|.-|...
T Consensus       113 i~v~nK~Dl~~  123 (172)
T 2erx_A          113 MLVGNKCDESP  123 (172)
T ss_dssp             EEEEECGGGGG
T ss_pred             EEEEEcccccc
Confidence            88888877543

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.59  E-value=0.67  Score=37.41  Aligned_cols=70  Identities=16%  Similarity=0.109  Sum_probs=37.5

Q ss_pred             CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh--h
Q 036659           25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV--F  102 (300)
Q Consensus        25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i--~  102 (300)
                      .+..+.++|||       |.       +....-    ......+.+++|+|+.+..+-+   -..+..+...+....  -
T Consensus        70 ~~~~~~i~Dt~-------G~-------~~~~~~----~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~i~~~~~~~  128 (191)
T 3dz8_A           70 KRVKLQIWDTA-------GQ-------ERYRTI----TTAYYRGAMGFILMYDITNEES---FNAVQDWATQIKTYSWDN  128 (191)
T ss_dssp             TTEEEEEECHH-------HH-------HHCHHH----HHHHHTTCCEEEEEEETTCHHH---HHTHHHHHHHHHHHSCTT
T ss_pred             EEEEEEEEeCC-------Ch-------HHHHHH----HHHHHccCCEEEEEEECcCHHH---HHHHHHHHHHHHHhcCCC
Confidence            45689999999       62       111111    2222357899999999974322   222333333332211  1


Q ss_pred             cceEEEEEcCCCC
Q 036659          103 DYMIVVFTGGDEL  115 (300)
Q Consensus       103 ~y~IVlFT~gD~L  115 (300)
                      .-+|||.|--|-.
T Consensus       129 ~piilv~nK~Dl~  141 (191)
T 3dz8_A          129 AQVILVGNKCDME  141 (191)
T ss_dssp             CEEEEEEECTTCG
T ss_pred             CCEEEEEECCCCc
Confidence            2456777766643

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=92.56  E-value=0.099  Score=40.43  Aligned_cols=38  Identities=18%  Similarity=0.218  Sum_probs=24.1

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCC
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSR   81 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r   81 (300)
                      +..+.++|||       |.-+..    .+   ...    ...+.|++|+|+.+..+
T Consensus        54 ~~~~~~~D~~-------G~~~~~----~~---~~~----~~~~~d~~i~v~d~~~~   91 (170)
T 1r2q_A           54 TVKFEIWDTA-------GQERYH----SL---APM----YYRGAQAAIVVYDITNE   91 (170)
T ss_dssp             EEEEEEEEEC-------CSGGGG----GG---HHH----HHTTCSEEEEEEETTCH
T ss_pred             EEEEEEEeCC-------CcHHhh----hh---hHH----hccCCCEEEEEEECCCH
Confidence            4578999999       632211    11   111    23578999999998743

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=92.42  E-value=1.3  Score=41.49  Aligned_cols=86  Identities=13%  Similarity=0.064  Sum_probs=48.7

Q ss_pred             ceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCC--CHHHHHHHHHHHHHhc
Q 036659           21 TIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRF--SQEEEAALHSWQTLFG   98 (300)
Q Consensus        21 t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rf--T~EE~~al~~lq~lFG   98 (300)
                      ...++|..+.++|||       |+... .+.+.+.. +..-+. .....+++|+|+.+....  +.+....+..+...+|
T Consensus       220 ~i~~~g~~v~l~DT~-------G~i~~-lp~~lve~-f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~  289 (364)
T 2qtf_A          220 AIPINNRKIMLVDTV-------GFIRG-IPPQIVDA-FFVTLS-EAKYSDALILVIDSTFSENLLIETLQSSFEILREIG  289 (364)
T ss_dssp             EEEETTEEEEEEECC-------CBCSS-CCGGGHHH-HHHHHH-GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEECCEEEEEEeCC-------Cchhc-CCHHHHHH-HHHHHH-HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhC
Confidence            356789999999999       75331 12222211 221111 124668999999986443  2333333444444455


Q ss_pred             hhhhcceEEEEEcCCCCCC
Q 036659           99 KNVFDYMIVVFTGGDELED  117 (300)
Q Consensus        99 ~~i~~y~IVlFT~gD~Le~  117 (300)
                      .. -.-+|+|++--|.+.+
T Consensus       290 ~~-~~p~ilV~NK~Dl~~~  307 (364)
T 2qtf_A          290 VS-GKPILVTLNKIDKING  307 (364)
T ss_dssp             CC-SCCEEEEEECGGGCCS
T ss_pred             cC-CCCEEEEEECCCCCCc
Confidence            32 1347888888887654

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=92.28  E-value=0.41  Score=37.68  Aligned_cols=75  Identities=19%  Similarity=0.041  Sum_probs=42.6

Q ss_pred             eeeCCEE--EEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHHh
Q 036659           22 IRIQVVL--EKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSWQTLF   97 (300)
Q Consensus        22 ~~~~Gr~--v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~--~al~~lq~lF   97 (300)
                      ..++|..  +.++|||       |.-+...           .......+.|++++|+.+..+-|-++.  ..+..+....
T Consensus        46 ~~~~~~~~~~~i~Dt~-------G~~~~~~-----------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~  107 (186)
T 1mh1_A           46 VMVDGKPVNLGLWDTA-------GQEDYDR-----------LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC  107 (186)
T ss_dssp             EEETTEEEEEEEECCC-------CSGGGTT-----------TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS
T ss_pred             EEECCEEEEEEEEECC-------CCHhHHH-----------HHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC
Confidence            3456654  5599999       6533211           112235688999999999744333332  2333343332


Q ss_pred             chhhhcceEEEEEcCCCCCC
Q 036659           98 GKNVFDYMIVVFTGGDELED  117 (300)
Q Consensus        98 G~~i~~y~IVlFT~gD~Le~  117 (300)
                      +   -..+|||.|.-|-..+
T Consensus       108 ~---~~piilv~nK~Dl~~~  124 (186)
T 1mh1_A          108 P---NTPIILVGTKLDLRDD  124 (186)
T ss_dssp             T---TSCEEEEEECHHHHTC
T ss_pred             C---CCCEEEEeEccccccc
Confidence            2   2357888887775543

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=92.13  E-value=0.75  Score=36.09  Aligned_cols=70  Identities=21%  Similarity=0.160  Sum_probs=37.2

Q ss_pred             EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhchhhhcce
Q 036659           27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGKNVFDYM  105 (300)
Q Consensus        27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~~i~~y~  105 (300)
                      ..+.++|||       |.-....    +   ..    ....+.|++++|+.+..+.|-++ ...+..+......  -.-+
T Consensus        61 ~~~~i~Dt~-------G~~~~~~----~---~~----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~  120 (181)
T 2efe_B           61 VKFEIWDTA-------GQERYHS----L---AP----MYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP--NMVM  120 (181)
T ss_dssp             EEEEEEECC-------CSGGGGG----G---TH----HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEE
T ss_pred             EEEEEEeCC-------CChhhhh----h---hH----HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcE
Confidence            479999999       6322110    0   11    12347899999999874433222 2222333322211  1236


Q ss_pred             EEEEEcCCCCC
Q 036659          106 IVVFTGGDELE  116 (300)
Q Consensus       106 IVlFT~gD~Le  116 (300)
                      +||+|.-|...
T Consensus       121 i~v~nK~Dl~~  131 (181)
T 2efe_B          121 ALAGNKSDLLD  131 (181)
T ss_dssp             EEEEECTTCTT
T ss_pred             EEEEECCcccc
Confidence            77778777544

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=91.97  E-value=1.2  Score=35.84  Aligned_cols=75  Identities=15%  Similarity=0.138  Sum_probs=40.1

Q ss_pred             eeeCCEE--EEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhch
Q 036659           22 IRIQVVL--EKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGK   99 (300)
Q Consensus        22 ~~~~Gr~--v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~   99 (300)
                      ..++|..  +.++|||       |.-+..           ........+.|++++|+.+..+-|-++  +...|...+..
T Consensus        64 ~~~~~~~~~~~i~Dt~-------G~~~~~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~  123 (194)
T 3reg_A           64 MKYKNEEFILHLWDTA-------GQEEYD-----------RLRPLSYADSDVVLLCFAVNNRTSFDN--ISTKWEPEIKH  123 (194)
T ss_dssp             EEETTEEEEEEEEEEC-------CSGGGT-----------TTGGGGCTTCSEEEEEEETTCHHHHHH--HHHTHHHHHHH
T ss_pred             EEECCEEEEEEEEECC-------CcHHHH-----------HHhHhhccCCcEEEEEEECCCHHHHHH--HHHHHHHHHHH
Confidence            3456654  5999999       632211           122334568999999999974333222  11223333322


Q ss_pred             hhh-cceEEEEEcCCCCC
Q 036659          100 NVF-DYMIVVFTGGDELE  116 (300)
Q Consensus       100 ~i~-~y~IVlFT~gD~Le  116 (300)
                      ..- .-+|||.|--|-..
T Consensus       124 ~~~~~p~ilv~nK~Dl~~  141 (194)
T 3reg_A          124 YIDTAKTVLVGLKVDLRK  141 (194)
T ss_dssp             HCTTSEEEEEEECGGGCC
T ss_pred             hCCCCCEEEEEEChhhcc
Confidence            221 24667777666443

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=91.74  E-value=1.2  Score=35.82  Aligned_cols=71  Identities=17%  Similarity=0.147  Sum_probs=38.5

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh-hhcc
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN-VFDY  104 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~-i~~y  104 (300)
                      +..+.++|||       |.-+.....       ..    ...+.|++|+|+.+..+.+-++  ...++..+.... .-..
T Consensus        73 ~~~~~i~Dt~-------G~~~~~~~~-------~~----~~~~~d~vi~v~D~~~~~s~~~--~~~~l~~i~~~~~~~~p  132 (193)
T 2oil_A           73 AVKAQIWDTA-------GLERYRAIT-------SA----YYRGAVGALLVFDLTKHQTYAV--VERWLKELYDHAEATIV  132 (193)
T ss_dssp             EEEEEEEEES-------CCCTTCTTH-------HH----HHTTCCEEEEEEETTCHHHHHT--HHHHHHHHHTTSCTTCE
T ss_pred             EEEEEEEeCC-------Cchhhhhhh-------HH----HhccCCEEEEEEECCCHHHHHH--HHHHHHHHHHhcCCCCe
Confidence            4578999999       764432211       11    1247899999999874333221  222333333221 1234


Q ss_pred             eEEEEEcCCCCC
Q 036659          105 MIVVFTGGDELE  116 (300)
Q Consensus       105 ~IVlFT~gD~Le  116 (300)
                      +|||+|--|-..
T Consensus       133 iilv~nK~Dl~~  144 (193)
T 2oil_A          133 VMLVGNKSDLSQ  144 (193)
T ss_dssp             EEEEEECGGGGG
T ss_pred             EEEEEECCCccc
Confidence            677777767443

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=91.67  E-value=1.6  Score=40.75  Aligned_cols=68  Identities=10%  Similarity=0.136  Sum_probs=44.7

Q ss_pred             EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCC-CHHHHHHHHHHHHHhchhhhcce
Q 036659           27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSWQTLFGKNVFDYM  105 (300)
Q Consensus        27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rf-T~EE~~al~~lq~lFG~~i~~y~  105 (300)
                      +.+++||||       |.       +...++..+.+    ..++++|||+.+...+ ..+....+..+. .+|   ...+
T Consensus        83 ~~i~iiDtP-------Gh-------~~f~~~~~~~~----~~~D~~ilVvda~~g~~~~qt~e~l~~~~-~~~---~~~i  140 (410)
T 1kk1_A           83 RRVSFIDAP-------GH-------EALMTTMLAGA----SLMDGAILVIAANEPCPRPQTREHLMALQ-IIG---QKNI  140 (410)
T ss_dssp             EEEEEEECS-------SH-------HHHHHHHHHCG----GGCSEEEEEEETTSCSSCHHHHHHHHHHH-HHT---CCCE
T ss_pred             cEEEEEECC-------Ch-------HHHHHHHHhhh----hhCCEEEEEEECCCCCCChhHHHHHHHHH-HcC---CCcE
Confidence            789999999       73       22334444433    3679999999998655 555555555443 333   2467


Q ss_pred             EEEEEcCCCCC
Q 036659          106 IVVFTGGDELE  116 (300)
Q Consensus       106 IVlFT~gD~Le  116 (300)
                      ||+++--|...
T Consensus       141 ivviNK~Dl~~  151 (410)
T 1kk1_A          141 IIAQNKIELVD  151 (410)
T ss_dssp             EEEEECGGGSC
T ss_pred             EEEEECccCCC
Confidence            88888878554

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=91.60  E-value=3.8  Score=31.81  Aligned_cols=75  Identities=12%  Similarity=-0.046  Sum_probs=41.9

Q ss_pred             eeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhch
Q 036659           23 RIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGK   99 (300)
Q Consensus        23 ~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~   99 (300)
                      .++|.  .+.++|||       |.-.           ..........+.|++++|+.+..+-+-++ ...+..+....+.
T Consensus        50 ~~~~~~~~~~i~Dt~-------G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  111 (177)
T 1wms_A           50 EVDGHFVTMQIWDTA-------GQER-----------FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADV  111 (177)
T ss_dssp             EETTEEEEEEEEECC-------CCGG-----------GHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTC
T ss_pred             EECCEEEEEEEEeCC-------Cchh-----------hhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccc
Confidence            45664  88999999       7321           11122334568899999999974333222 1222333333221


Q ss_pred             h--hhcceEEEEEcCCCC
Q 036659          100 N--VFDYMIVVFTGGDEL  115 (300)
Q Consensus       100 ~--i~~y~IVlFT~gD~L  115 (300)
                      .  .-...|||.|--|..
T Consensus       112 ~~~~~~p~i~v~nK~Dl~  129 (177)
T 1wms_A          112 KEPESFPFVILGNKIDIS  129 (177)
T ss_dssp             SCTTTSCEEEEEECTTCS
T ss_pred             cccCCCcEEEEEECCccc
Confidence            1  123568888887754

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=91.54  E-value=2.6  Score=33.91  Aligned_cols=75  Identities=20%  Similarity=0.078  Sum_probs=42.5

Q ss_pred             eeeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHHh
Q 036659           22 IRIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSWQTLF   97 (300)
Q Consensus        22 ~~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~--~al~~lq~lF   97 (300)
                      ..++|.  .+.++|||       |.-+....           ......+.|++++|+.+..+-|-++.  ..+..+....
T Consensus        61 ~~~~~~~~~~~i~Dt~-------G~~~~~~~-----------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~  122 (201)
T 2q3h_A           61 VSVDGRPVRLQLCDTA-------GQDEFDKL-----------RPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC  122 (201)
T ss_dssp             EEETTEEEEEEEEECC-------CSTTCSSS-----------GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC
T ss_pred             EEECCEEEEEEEEECC-------CCHHHHHH-----------hHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC
Confidence            456776  56699999       65433221           12234588999999999744333332  1222233322


Q ss_pred             chhhhcceEEEEEcCCCCCC
Q 036659           98 GKNVFDYMIVVFTGGDELED  117 (300)
Q Consensus        98 G~~i~~y~IVlFT~gD~Le~  117 (300)
                      +   -..+|||.|.-|-..+
T Consensus       123 ~---~~p~ilv~nK~Dl~~~  139 (201)
T 2q3h_A          123 P---KAPIILVGTQSDLRED  139 (201)
T ss_dssp             S---SSCEEEEEECGGGGGC
T ss_pred             C---CCCEEEEEECHhhhhc
Confidence            1   2356788887775543

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=91.47  E-value=0.62  Score=36.92  Aligned_cols=48  Identities=15%  Similarity=0.185  Sum_probs=30.4

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCC
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVR   79 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~   79 (300)
                      ..++|..+.++|||       |..+.....  ..+.+.... +...++|++++|+.+.
T Consensus        45 ~~~~~~~l~i~Dt~-------G~~~~~~~~--~~~~~~~~~-~~~~~~~~~i~v~D~~   92 (165)
T 2wji_A           45 FEYNGEKFKVVDLP-------GVYSLTANS--IDEIIARDY-IINEKPDLVVNIVDAT   92 (165)
T ss_dssp             EEETTEEEEEEECC-------CCSCSSSSS--HHHHHHHHH-HHHHCCSEEEEEEETT
T ss_pred             EEECCcEEEEEECC-------CcccCCCcc--hhHHHHHHH-HhcCCCCEEEEEecCC
Confidence            34678999999999       776654322  112222211 1124789999999986

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=91.33  E-value=0.91  Score=46.18  Aligned_cols=72  Identities=21%  Similarity=0.238  Sum_probs=48.9

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ..+++..+++||||       |..|+.       .++.+++.    +.+++|+|+......+......+..+.. ++   
T Consensus        70 ~~~~~~~i~liDTP-------G~~df~-------~~~~~~l~----~aD~~llVvDa~~g~~~~~~~~~~~~~~-~~---  127 (693)
T 2xex_A           70 AAWEGHRVNIIDTP-------GHVDFT-------VEVERSLR----VLDGAVTVLDAQSGVEPQTETVWRQATT-YG---  127 (693)
T ss_dssp             EEETTEEEEEECCC-------CCSSCC-------HHHHHHHH----HCSEEEEEEETTTBSCHHHHHHHHHHHH-TT---
T ss_pred             EEECCeeEEEEECc-------CCcchH-------HHHHHHHH----HCCEEEEEECCCCCCcHHHHHHHHHHHH-cC---
Confidence            56789999999999       887653       23444443    4789999999987788887776665443 22   


Q ss_pred             hcceEEEEEcCCCCC
Q 036659          102 FDYMIVVFTGGDELE  116 (300)
Q Consensus       102 ~~y~IVlFT~gD~Le  116 (300)
                       .-.|+|.+--|...
T Consensus       128 -~p~ilviNK~Dl~~  141 (693)
T 2xex_A          128 -VPRIVFVNKMDKLG  141 (693)
T ss_dssp             -CCEEEEEECTTSTT
T ss_pred             -CCEEEEEECCCccc
Confidence             23555556556543

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=91.26  E-value=0.39  Score=38.94  Aligned_cols=71  Identities=13%  Similarity=-0.058  Sum_probs=37.5

Q ss_pred             CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhchhhhc
Q 036659           25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFGKNVFD  103 (300)
Q Consensus        25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG~~i~~  103 (300)
                      .+..+.++|||       |.-+....       ...    ...+.+++|+|+.+..+-+-++. ..+..+......  -.
T Consensus        70 ~~~~~~i~Dt~-------G~~~~~~~-------~~~----~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~--~~  129 (192)
T 2fg5_A           70 ELHKFLIWDTA-------GQERFHSL-------APM----YYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPE--NI  129 (192)
T ss_dssp             SEEEEEEEEEC-------CSGGGGGG-------THH----HHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCT--TC
T ss_pred             EEEEEEEEcCC-------CchhhHhh-------hHH----hhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC--CC
Confidence            35689999999       63222110       111    12467999999999744332221 122222222111  23


Q ss_pred             ceEEEEEcCCCC
Q 036659          104 YMIVVFTGGDEL  115 (300)
Q Consensus       104 y~IVlFT~gD~L  115 (300)
                      ..|||.|--|-.
T Consensus       130 piiiv~NK~Dl~  141 (192)
T 2fg5_A          130 VMAIAGNKCDLS  141 (192)
T ss_dssp             EEEEEEECGGGG
T ss_pred             cEEEEEECcccc
Confidence            567777777754

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=91.20  E-value=3  Score=32.36  Aligned_cols=75  Identities=17%  Similarity=0.130  Sum_probs=39.7

Q ss_pred             eeeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhch
Q 036659           22 IRIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGK   99 (300)
Q Consensus        22 ~~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~   99 (300)
                      ..++|.  .+.++|||       |.-+.......       .    ..+.|++++|+.+..+-+-++  ...++..++..
T Consensus        50 ~~~~~~~~~~~~~Dt~-------G~~~~~~~~~~-------~----~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~  109 (181)
T 2fn4_A           50 CSVDGIPARLDILDTA-------GQEEFGAMREQ-------Y----MRAGHGFLLVFAINDRQSFNE--VGKLFTQILRV  109 (181)
T ss_dssp             EEETTEEEEEEEEECC-------CTTTTSCCHHH-------H----HHHCSEEEEEEETTCHHHHHH--HHHHHHHHHHH
T ss_pred             EEECCEEEEEEEEECC-------CchhhHHHHHH-------H----HhhCCEEEEEEeCCCHHHHHH--HHHHHHHHHHh
Confidence            346664  68889999       64433221111       1    135789999999874222221  12223333222


Q ss_pred             hh--hcceEEEEEcCCCCC
Q 036659          100 NV--FDYMIVVFTGGDELE  116 (300)
Q Consensus       100 ~i--~~y~IVlFT~gD~Le  116 (300)
                      ..  -.-.|||+|.-|-..
T Consensus       110 ~~~~~~piilv~nK~Dl~~  128 (181)
T 2fn4_A          110 KDRDDFPVVLVGNKADLES  128 (181)
T ss_dssp             HTSSCCCEEEEEECGGGGG
T ss_pred             cCCCCCCEEEEEECccccc
Confidence            11  124688888777543

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=91.17  E-value=0.25  Score=38.54  Aligned_cols=74  Identities=15%  Similarity=0.097  Sum_probs=38.7

Q ss_pred             eeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhch
Q 036659           23 RIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGK   99 (300)
Q Consensus        23 ~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~   99 (300)
                      .++|.  .+.++|||       |.-+...       .+..+    ..+.|++++|+.+..+.+-++ ...+..+....+.
T Consensus        57 ~~~~~~~~~~~~Dt~-------G~~~~~~-------~~~~~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~  118 (179)
T 2y8e_A           57 YLEDRTVRLQLWDTA-------GQERFRS-------LIPSY----IRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGS  118 (179)
T ss_dssp             EETTEEEEEEEEEEC-------CSGGGGG-------GSHHH----HHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT
T ss_pred             EECCeEEEEEEEECC-------CcHHHHH-------HHHHH----hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence            45664  78999999       6322111       01111    237899999999874322221 1222223322221


Q ss_pred             hhhcceEEEEEcCCCCC
Q 036659          100 NVFDYMIVVFTGGDELE  116 (300)
Q Consensus       100 ~i~~y~IVlFT~gD~Le  116 (300)
                      +  .-+|||+|.-|-..
T Consensus       119 ~--~piilv~nK~Dl~~  133 (179)
T 2y8e_A          119 D--VIIMLVGNKTDLSD  133 (179)
T ss_dssp             S--SEEEEEEECGGGGG
T ss_pred             C--CcEEEEEECCcccc
Confidence            1  23677888777443

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=91.17  E-value=0.68  Score=37.04  Aligned_cols=76  Identities=12%  Similarity=0.007  Sum_probs=45.5

Q ss_pred             ceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh
Q 036659           21 TIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN  100 (300)
Q Consensus        21 t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~  100 (300)
                      +..+++..+.++|||       |.-+....           ......+.|++|+|+.+..+-+-++  +...+..+....
T Consensus        59 ~~~~~~~~~~i~Dt~-------G~~~~~~~-----------~~~~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~  118 (181)
T 2h17_A           59 EIVINNTRFLMWDIG-------GQESLRSS-----------WNTYYTNTEFVIVVVDSTDRERISV--TREELYKMLAHE  118 (181)
T ss_dssp             EEEETTEEEEEEEES-------SSGGGTCG-----------GGGGGTTCCEEEEEEETTCTTTHHH--HHHHHHHHHTCG
T ss_pred             EEEECCEEEEEEECC-------CCHhHHHH-----------HHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhCh
Confidence            355789999999999       65322111           1222358899999999986544432  333444444321


Q ss_pred             --hhcceEEEEEcCCCCC
Q 036659          101 --VFDYMIVVFTGGDELE  116 (300)
Q Consensus       101 --i~~y~IVlFT~gD~Le  116 (300)
                        .-..+|||.|--|-..
T Consensus       119 ~~~~~piilv~NK~Dl~~  136 (181)
T 2h17_A          119 DLRKAGLLIFANKQDVKE  136 (181)
T ss_dssp             GGTTCEEEEEEECTTSTT
T ss_pred             hhCCCeEEEEEECCCccc
Confidence              2234677777777543

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=91.09  E-value=1.7  Score=35.06  Aligned_cols=75  Identities=17%  Similarity=0.054  Sum_probs=43.9

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh-
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN-  100 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~-  100 (300)
                      ...++..+.++|||       |.-+.       .......    ..+.|++++|+.+..+-+-+  .....+..+.... 
T Consensus        62 ~~~~~~~~~l~Dt~-------G~~~~-------~~~~~~~----~~~~d~ii~v~D~~~~~s~~--~~~~~~~~~~~~~~  121 (188)
T 1zd9_A           62 ITKGNVTIKLWDIG-------GQPRF-------RSMWERY----CRGVSAIVYMVDAADQEKIE--ASKNELHNLLDKPQ  121 (188)
T ss_dssp             EEETTEEEEEEEEC-------CSHHH-------HTTHHHH----HTTCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGG
T ss_pred             EEeCCEEEEEEECC-------CCHhH-------HHHHHHH----HccCCEEEEEEECCCHHHHH--HHHHHHHHHHhCcc
Confidence            34678899999999       64221       1112222    25789999999987433322  2334444544321 


Q ss_pred             -hhcceEEEEEcCCCCC
Q 036659          101 -VFDYMIVVFTGGDELE  116 (300)
Q Consensus       101 -i~~y~IVlFT~gD~Le  116 (300)
                       .-.-+|||+|--|...
T Consensus       122 ~~~~piilv~NK~Dl~~  138 (188)
T 1zd9_A          122 LQGIPVLVLGNKRDLPG  138 (188)
T ss_dssp             GTTCCEEEEEECTTSTT
T ss_pred             cCCCCEEEEEECCCCcc
Confidence             1234778888777554

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=91.06  E-value=1.4  Score=35.36  Aligned_cols=74  Identities=16%  Similarity=0.045  Sum_probs=42.3

Q ss_pred             eeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHHhc
Q 036659           23 RIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSWQTLFG   98 (300)
Q Consensus        23 ~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~--~al~~lq~lFG   98 (300)
                      .++|  ..+.++|||       |.-+...           .......+.|++++|+.+..+-|-++.  ..+..+....+
T Consensus        60 ~~~~~~~~~~i~D~~-------G~~~~~~-----------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  121 (194)
T 2atx_A           60 TVGGKQYLLGLYDTA-------GQEDYDR-----------LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP  121 (194)
T ss_dssp             ESSSCEEEEEEECCC-------CSSSSTT-----------TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST
T ss_pred             EECCEEEEEEEEECC-------CCcchhH-----------HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC
Confidence            4455  578899999       7544321           122335688999999998743222221  22333333221


Q ss_pred             hhhhcceEEEEEcCCCCCC
Q 036659           99 KNVFDYMIVVFTGGDELED  117 (300)
Q Consensus        99 ~~i~~y~IVlFT~gD~Le~  117 (300)
                         -...|||.|--|...+
T Consensus       122 ---~~piilv~nK~Dl~~~  137 (194)
T 2atx_A          122 ---NVPFLLIGTQIDLRDD  137 (194)
T ss_dssp             ---TCCEEEEEECTTSTTC
T ss_pred             ---CCCEEEEEEChhhccc
Confidence               2356788887775543

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=90.96  E-value=1.2  Score=36.49  Aligned_cols=75  Identities=20%  Similarity=0.108  Sum_probs=41.5

Q ss_pred             eeeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHHh
Q 036659           22 IRIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSWQTLF   97 (300)
Q Consensus        22 ~~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE--~~al~~lq~lF   97 (300)
                      ..++|.  .+.++|||       |.-+...           .......+.|++|+|+.+..+-+-++  ...+..+....
T Consensus        66 ~~~~~~~~~l~i~Dt~-------G~~~~~~-----------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~  127 (201)
T 2gco_A           66 IEVDGKQVELALWDTA-------GQEDYDR-----------LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC  127 (201)
T ss_dssp             EEETTEEEEEEEECCC-------CSGGGTT-----------TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS
T ss_pred             EEECCEEEEEEEEECC-------CchhHHH-----------HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC
Confidence            345664  78899999       6322111           11223568899999999874322222  12223333221


Q ss_pred             chhhhcceEEEEEcCCCCCC
Q 036659           98 GKNVFDYMIVVFTGGDELED  117 (300)
Q Consensus        98 G~~i~~y~IVlFT~gD~Le~  117 (300)
                       .  -.-++||.|--|.+..
T Consensus       128 -~--~~piilv~nK~Dl~~~  144 (201)
T 2gco_A          128 -P--NVPIILVGNKKDLRQD  144 (201)
T ss_dssp             -T--TCCEEEEEECGGGTTC
T ss_pred             -C--CCCEEEEEecHHhhcC
Confidence             1  2346788887776554

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=90.87  E-value=0.74  Score=36.96  Aligned_cols=77  Identities=18%  Similarity=0.066  Sum_probs=40.1

Q ss_pred             eeeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhc
Q 036659           22 IRIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFG   98 (300)
Q Consensus        22 ~~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG   98 (300)
                      ..++|  ..+.++|||       |.-+       ....+..   ....+.|++|+|+.+..+-|-++ ...+..+...+.
T Consensus        62 ~~~~~~~~~~~l~Dt~-------G~~~-------~~~~~~~---~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~  124 (189)
T 1z06_A           62 VDIDGERIKIQLWDTA-------GQER-------FRKSMVQ---HYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL  124 (189)
T ss_dssp             EEETTEEEEEEEEECC-------CSHH-------HHTTTHH---HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC
T ss_pred             EEECCEEEEEEEEECC-------Cchh-------hhhhhhH---HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC
Confidence            34566  478999999       6311       1101111   11247899999999874322222 122223333321


Q ss_pred             hhhhcceEEEEEcCCCCC
Q 036659           99 KNVFDYMIVVFTGGDELE  116 (300)
Q Consensus        99 ~~i~~y~IVlFT~gD~Le  116 (300)
                      . .-..+|||.|.-|...
T Consensus       125 ~-~~~piilv~nK~Dl~~  141 (189)
T 1z06_A          125 A-NDIPRILVGNKCDLRS  141 (189)
T ss_dssp             C-SCCCEEEEEECTTCGG
T ss_pred             C-CCCCEEEEEECccccc
Confidence            1 1234678888777543

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=90.83  E-value=2.5  Score=33.98  Aligned_cols=41  Identities=17%  Similarity=0.203  Sum_probs=25.7

Q ss_pred             eeeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCC
Q 036659           22 IRIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRS   80 (300)
Q Consensus        22 ~~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~   80 (300)
                      ..++|.  .+.++|||       |.-+.....       ..    ...+.|++|+|+.+..
T Consensus        63 ~~~~~~~~~~~i~Dt~-------G~~~~~~~~-------~~----~~~~~d~ii~v~d~~~  105 (191)
T 2a5j_A           63 VNIDGKQIKLQIWDTA-------GQESFRSIT-------RS----YYRGAAGALLVYDITR  105 (191)
T ss_dssp             EEETTEEEEEEEECCT-------TGGGTSCCC-------HH----HHTTCSEEEEEEETTC
T ss_pred             EEECCEEEEEEEEECC-------CchhhhhhH-------HH----HhccCCEEEEEEECCC
Confidence            345664  78999999       643322111       11    1247899999999874

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=90.80  E-value=0.38  Score=47.74  Aligned_cols=65  Identities=11%  Similarity=0.087  Sum_probs=42.0

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCC-------------------------CCCeEEEEEE
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAK-------------------------DGIHAVLVVF   76 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~-------------------------pGpHA~LLV~   76 (300)
                      ..|+|..||+||||       |-.|++.       |+.+++..+.                         -|+-.+++|-
T Consensus        95 ~~~~~~~iNlIDTP-------GHvDF~~-------Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fIN  160 (548)
T 3vqt_A           95 FPYRDRVVNLLDTP-------GHQDFSE-------DTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVN  160 (548)
T ss_dssp             EEETTEEEEEECCC-------CGGGCSH-------HHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             EEECCEEEEEEeCC-------CcHHHHH-------HHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEe
Confidence            57899999999999       8888863       3344433211                         1334556666


Q ss_pred             eCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           77 SVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        77 ~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      +++ |-..+=..+++.++..||..+
T Consensus       161 K~D-r~~ad~~~~~~~i~~~l~~~~  184 (548)
T 3vqt_A          161 KMD-REALHPLDVMADIEQHLQIEC  184 (548)
T ss_dssp             CTT-SCCCCHHHHHHHHHHHHTSEE
T ss_pred             ccc-chhcchhHhhhhhhhhcCCce
Confidence            665 655555667777777776554

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=90.44  E-value=2.1  Score=35.39  Aligned_cols=114  Identities=10%  Similarity=-0.022  Sum_probs=60.7

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhchhhhcc
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFGKNVFDY  104 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG~~i~~y  104 (300)
                      +..+.++|||       |.-.......       .    ...+.|++|+|+.+..+-|-++. ..+..+.....   -.-
T Consensus        63 ~~~~~i~Dt~-------G~~~~~~~~~-------~----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p  121 (221)
T 3gj0_A           63 PIKFNVWDTA-------GQEKFGGLRD-------G----YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE---NIP  121 (221)
T ss_dssp             EEEEEEEEEC-------SGGGTSCCCH-------H----HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST---TCC
T ss_pred             EEEEEEEeCC-------ChHHHhHHHH-------H----HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCC
Confidence            4578999999       6432221111       1    12378999999999843332221 12222222221   224


Q ss_pred             eEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcCCeEEEEeCCCcchhh
Q 036659          105 MIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTKDEAK  184 (300)
Q Consensus       105 ~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~R~~~FnNk~~de~~  184 (300)
                      +|||.|--|-....   .        ......                           +.+..+-.|+....++     
T Consensus       122 ~ilv~nK~Dl~~~~---~--------~~~~~~---------------------------~~~~~~~~~~~~Sa~~-----  158 (221)
T 3gj0_A          122 IVLCGNKVDIKDRK---V--------KAKSIV---------------------------FHRKKNLQYYDISAKS-----  158 (221)
T ss_dssp             EEEEEECTTSSSCS---S--------CGGGCC---------------------------HHHHHTCEEEECBGGG-----
T ss_pred             EEEEEECCcccccc---c--------cHHHHH---------------------------HHHHcCCEEEEEeCCC-----
Confidence            67777776743321   1        111223                           4455566666655443     


Q ss_pred             chHHHHHHHHHHHHHHHHcC
Q 036659          185 RTEQIWKLLSLVNSVAVQND  204 (300)
Q Consensus       185 ~~~Qv~eLL~~Ve~mv~~Ng  204 (300)
                       ...|.+|+..+-..+..+.
T Consensus       159 -~~gi~~l~~~l~~~l~~~~  177 (221)
T 3gj0_A          159 -NYNFEKPFLWLARKLIGDP  177 (221)
T ss_dssp             -TBTTTHHHHHHHHHHHTCT
T ss_pred             -CCCHHHHHHHHHHHHHhCc
Confidence             2467888888777666554

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=90.36  E-value=2  Score=34.87  Aligned_cols=75  Identities=15%  Similarity=0.032  Sum_probs=40.9

Q ss_pred             EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceE
Q 036659           27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMI  106 (300)
Q Consensus        27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~I  106 (300)
                      ..+.++|||       |.-+.....-.    ....    ..+.|++|+|+.+..++.+.......++..+....----.|
T Consensus        69 ~~l~i~Dt~-------G~~~~~~~~~~----~~~~----~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~pii  133 (196)
T 3llu_A           69 VNFQIWDFP-------GQMDFFDPTFD----YEMI----FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFE  133 (196)
T ss_dssp             CCEEEEECC-------SSCCTTCTTCC----HHHH----HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred             eEEEEEECC-------CCHHHHhhhhh----cccc----cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEE
Confidence            579999999       65432211100    0111    13689999999998664444444445555542211123456


Q ss_pred             EEEEcCCCCC
Q 036659          107 VVFTGGDELE  116 (300)
Q Consensus       107 VlFT~gD~Le  116 (300)
                      ||.+--|-+.
T Consensus       134 lv~nK~Dl~~  143 (196)
T 3llu_A          134 VFIHKVDGLS  143 (196)
T ss_dssp             EEEECGGGSC
T ss_pred             EEEeccccCc
Confidence            6666666543

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=90.25  E-value=2.9  Score=34.11  Aligned_cols=73  Identities=21%  Similarity=0.088  Sum_probs=38.2

Q ss_pred             eeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhch
Q 036659           23 RIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGK   99 (300)
Q Consensus        23 ~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~   99 (300)
                      .++|  ..+.++|||       |.-+....       ..    ....+.|++|+|+.+..+-+-++ ...+..+......
T Consensus        68 ~~~~~~~~l~l~Dt~-------G~~~~~~~-------~~----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  129 (200)
T 2o52_A           68 NVGGKTVKLQIWDTA-------GQERFRSV-------TR----SYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASP  129 (200)
T ss_dssp             EETTEEEEEEEECCT-------THHHHSCC-------CH----HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCT
T ss_pred             EECCeeeEEEEEcCC-------CcHhHHHH-------HH----HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC
Confidence            4566  589999999       63211110       11    12347899999999874333222 1122222222221


Q ss_pred             hhhcceEEEEEcCCCC
Q 036659          100 NVFDYMIVVFTGGDEL  115 (300)
Q Consensus       100 ~i~~y~IVlFT~gD~L  115 (300)
                        -.-+|||.|--|-.
T Consensus       130 --~~piilv~nK~Dl~  143 (200)
T 2o52_A          130 --NIVVILCGNKKDLD  143 (200)
T ss_dssp             --TCEEEEEEECGGGG
T ss_pred             --CCcEEEEEECCCcc
Confidence              12467777776643

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=90.20  E-value=6.4  Score=31.89  Aligned_cols=74  Identities=9%  Similarity=0.052  Sum_probs=40.3

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ...++..+.++|||       |.-+....       ....+    .+.+++|+|+.+..+-+-+  .+...+..+.....
T Consensus        68 ~~~~~~~~~i~Dt~-------G~~~~~~~-------~~~~~----~~~d~iilv~D~~~~~s~~--~~~~~l~~~~~~~~  127 (192)
T 2b6h_A           68 VEYKNICFTVWDVG-------GQDKIRPL-------WRHYF----QNTQGLIFVVDSNDRERVQ--ESADELQKMLQEDE  127 (192)
T ss_dssp             EEETTEEEEEEECC------------CTT-------HHHHH----HTCCEEEEEEETTCGGGHH--HHHHHHHHHHTCGG
T ss_pred             EEECCEEEEEEECC-------CCHhHHHH-------HHHHh----ccCCEEEEEEECCCHHHHH--HHHHHHHHHhcccc
Confidence            34678899999999       76433221       11112    4789999999997543322  22344444443321


Q ss_pred             --hcceEEEEEcCCCC
Q 036659          102 --FDYMIVVFTGGDEL  115 (300)
Q Consensus       102 --~~y~IVlFT~gD~L  115 (300)
                        -.-+|||.|--|-.
T Consensus       128 ~~~~piilv~NK~Dl~  143 (192)
T 2b6h_A          128 LRDAVLLVFANKQDMP  143 (192)
T ss_dssp             GTTCEEEEEEECTTST
T ss_pred             cCCCeEEEEEECCCCC
Confidence              12456777766643

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=90.17  E-value=4.4  Score=32.72  Aligned_cols=73  Identities=12%  Similarity=0.208  Sum_probs=39.0

Q ss_pred             eeeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhch
Q 036659           22 IRIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGK   99 (300)
Q Consensus        22 ~~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~   99 (300)
                      ..++|  ..+.++|||       |.-+.       .......+    .+.|++|+|+.+..+.|-++   +..+...+..
T Consensus        68 ~~~~~~~~~l~l~Dt~-------G~~~~-------~~~~~~~~----~~~d~iilV~D~~~~~s~~~---~~~~~~~i~~  126 (192)
T 2il1_A           68 VELRGKKIRLQIWDTA-------GQERF-------NSITSAYY----RSAKGIILVYDITKKETFDD---LPKWMKMIDK  126 (192)
T ss_dssp             EEETTEEEEEEEEEEC-------CSGGG-------HHHHHHHH----HHCSEEEEEEETTCHHHHHT---HHHHHHHHHH
T ss_pred             EEECCeEEEEEEEeCC-------CcHHH-------HHHHHHHh----cCCCEEEEEEECcCHHHHHH---HHHHHHHHHH
Confidence            34566  478999999       63221       11122222    36789999999974444333   2222222222


Q ss_pred             hh--hcceEEEEEcCCCC
Q 036659          100 NV--FDYMIVVFTGGDEL  115 (300)
Q Consensus       100 ~i--~~y~IVlFT~gD~L  115 (300)
                      ..  -.-+|||.|--|..
T Consensus       127 ~~~~~~piilV~NK~Dl~  144 (192)
T 2il1_A          127 YASEDAELLLVGNKLDCE  144 (192)
T ss_dssp             HSCTTCEEEEEEECGGGG
T ss_pred             hcCCCCcEEEEEECcccc
Confidence            11  13467777777744

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=90.07  E-value=3.7  Score=31.92  Aligned_cols=75  Identities=13%  Similarity=-0.026  Sum_probs=38.8

Q ss_pred             eeCC---EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhc
Q 036659           23 RIQV---VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFG   98 (300)
Q Consensus        23 ~~~G---r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG   98 (300)
                      .++|   ..+.++|||       |.-.....       ....    ..+.|++++|+.+..+-|-++. ..+..+.....
T Consensus        49 ~~~~~~~~~~~~~Dt~-------G~~~~~~~-------~~~~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~  110 (178)
T 2hxs_A           49 TLPGNLNVTLQIWDIG-------GQTIGGKM-------LDKY----IYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSE  110 (178)
T ss_dssp             EETTTEEEEEEEEECT-------TCCTTCTT-------HHHH----HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHH
T ss_pred             EeCCCCEEEEEEEECC-------CCccccch-------hhHH----HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhc
Confidence            4555   689999999       64332211       1111    2478999999999743332221 12222222211


Q ss_pred             hh-hhcceEEEEEcCCCC
Q 036659           99 KN-VFDYMIVVFTGGDEL  115 (300)
Q Consensus        99 ~~-i~~y~IVlFT~gD~L  115 (300)
                      .. -...+|||.|--|-.
T Consensus       111 ~~~~~~~iilv~nK~Dl~  128 (178)
T 2hxs_A          111 ESETQPLVALVGNKIDLE  128 (178)
T ss_dssp             HHTCCCEEEEEEECGGGG
T ss_pred             ccCCCCeEEEEEEccccc
Confidence            11 112256777776643

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=89.75  E-value=0.78  Score=41.91  Aligned_cols=75  Identities=11%  Similarity=0.061  Sum_probs=39.6

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ...++..+.++|||       |--....-       ...+    ..+.|+||+|+.+..+-+-++  ....+..++....
T Consensus       204 ~~~~~~~l~i~Dt~-------G~~~~~~~-------~~~~----~~~ad~vilV~D~~~~~s~~~--~~~~~~~~~~~~~  263 (329)
T 3o47_A          204 VEYKNISFTVWDVG-------GQDKIRPL-------WRHY----FQNTQGLIFVVDSNDRERVNE--AREELMRMLAEDE  263 (329)
T ss_dssp             EEETTEEEEEEECC------------CCS-------HHHH----HTTEEEEEEEEETTCSSSHHH--HHHHHHHHHTCGG
T ss_pred             EecCcEEEEEEECC-------CCHhHHHH-------HHHH----hccCCEEEEEEECCchHHHHH--HHHHHHHHHhhhc
Confidence            34578899999999       63222111       1112    247899999999964433322  2233444433322


Q ss_pred             h--cceEEEEEcCCCCC
Q 036659          102 F--DYMIVVFTGGDELE  116 (300)
Q Consensus       102 ~--~y~IVlFT~gD~Le  116 (300)
                      .  .-+|||.|--|-..
T Consensus       264 ~~~~piilV~NK~Dl~~  280 (329)
T 3o47_A          264 LRDAVLLVFANKQDLPN  280 (329)
T ss_dssp             GTTCEEEEEEECTTSTT
T ss_pred             cCCCeEEEEEECccCCc
Confidence            1  23566666666443

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=89.75  E-value=3.2  Score=31.72  Aligned_cols=75  Identities=19%  Similarity=0.078  Sum_probs=39.5

Q ss_pred             eeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhch
Q 036659           23 RIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFGK   99 (300)
Q Consensus        23 ~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG~   99 (300)
                      .+++.  .+.++|||       |.-+..       .....+    .++.|++++|+.+..+.|-++. ..+..+....+.
T Consensus        46 ~~~~~~~~~~~~D~~-------G~~~~~-------~~~~~~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  107 (170)
T 1ek0_A           46 TINEHTVKFEIWDTA-------GQERFA-------SLAPXY----YRNAQAALVVYDVTKPQSFIKARHWVKELHEQASK  107 (170)
T ss_dssp             EETTEEEEEEEEEEC-------CSGGGG-------GGHHHH----HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT
T ss_pred             EECCEEEEEEEEECC-------CChhhh-------hhhhhh----hccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCC
Confidence            34554  78999999       632211       111222    2577999999999743332221 112223322222


Q ss_pred             hhhcceEEEEEcCCCCCC
Q 036659          100 NVFDYMIVVFTGGDELED  117 (300)
Q Consensus       100 ~i~~y~IVlFT~gD~Le~  117 (300)
                      +  ..++||.|.-|....
T Consensus       108 ~--~piilv~nK~Dl~~~  123 (170)
T 1ek0_A          108 D--IIIALVGNKIDXLQE  123 (170)
T ss_dssp             T--CEEEEEEECGGGGGS
T ss_pred             C--CcEEEEEECCCcccc
Confidence            2  236677787775543

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=89.50  E-value=0.56  Score=46.92  Aligned_cols=80  Identities=20%  Similarity=0.093  Sum_probs=46.7

Q ss_pred             EEEEEEeCCCCcccCcccCC--CCCChHHHHHHHHHhhc-cCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659           27 VLEKVIDTRWVRHAIARLFD--FSAGSKFVGKEIVTCIG-MAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD  103 (300)
Q Consensus        27 r~v~VIDTP~w~~~~~glfd--~~~~~e~v~kEI~~ci~-l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~  103 (300)
                      -.+.++|.|       |++.  ++.-+......|..-+. +...+..++|+|.+.+..+...  .++..+..+=.  .-.
T Consensus       147 p~LlLlDeP-------Gi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~--~~l~la~~v~~--~g~  215 (608)
T 3szr_A          147 PDLTLIDLP-------GITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATT--EALSMAQEVDP--EGD  215 (608)
T ss_dssp             CCEEEEECC-------C------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTC--HHHHHHHHHCS--SCC
T ss_pred             CceeEeeCC-------CccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccH--HHHHHHHHHhh--cCC
Confidence            468999999       7665  33323344445555443 2455566777787765454432  35555554422  235


Q ss_pred             ceEEEEEcCCCCCC
Q 036659          104 YMIVVFTGGDELED  117 (300)
Q Consensus       104 y~IVlFT~gD~Le~  117 (300)
                      .+|+|+|.+|.+..
T Consensus       216 rtI~VlTK~Dlv~~  229 (608)
T 3szr_A          216 RTIGILTKPDLVDK  229 (608)
T ss_dssp             SEEEEEECGGGSSS
T ss_pred             ceEEEecchhhcCc
Confidence            89999999998865

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=89.20  E-value=3  Score=34.61  Aligned_cols=74  Identities=15%  Similarity=0.064  Sum_probs=38.1

Q ss_pred             eeeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhc
Q 036659           22 IRIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFG   98 (300)
Q Consensus        22 ~~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG   98 (300)
                      ..++|  ..+.++|||       |.-....-           ......+.|++|+|+.+..+.|-++. ..+..+....+
T Consensus        55 ~~~~~~~~~~~i~Dt~-------G~~~~~~~-----------~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~  116 (223)
T 3cpj_B           55 LEIEGKRIKAQIWDTA-------GQERYRAI-----------TSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD  116 (223)
T ss_dssp             EEETTEEEEEEEECCT-------TTTTTTCC-----------CGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC
T ss_pred             EEECCEEEEEEEEECC-------Cccchhhh-----------HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC
Confidence            34666  588999999       63222111           12234688999999998744333321 11222222211


Q ss_pred             hhhhcceEEEEEcCCCC
Q 036659           99 KNVFDYMIVVFTGGDEL  115 (300)
Q Consensus        99 ~~i~~y~IVlFT~gD~L  115 (300)
                      .  -.-.|||.|--|-.
T Consensus       117 ~--~~piilv~nK~Dl~  131 (223)
T 3cpj_B          117 D--NVAVGLIGNKSDLA  131 (223)
T ss_dssp             ----CEEEEEECCGGGG
T ss_pred             C--CCeEEEEEECcccc
Confidence            1  12356666766643

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=89.08  E-value=2.8  Score=33.05  Aligned_cols=45  Identities=20%  Similarity=0.160  Sum_probs=26.7

Q ss_pred             EEEEEeCCCCcccCcccCCCCCCh----HHHHHHHHHhhccCCCCCeEEEEEEeCC
Q 036659           28 LEKVIDTRWVRHAIARLFDFSAGS----KFVGKEIVTCIGMAKDGIHAVLVVFSVR   79 (300)
Q Consensus        28 ~v~VIDTP~w~~~~~glfd~~~~~----e~v~kEI~~ci~l~~pGpHA~LLV~~v~   79 (300)
                      .+.++|||       |+.+...-+    +.....+...+.-..+|.++++.|+...
T Consensus        45 ~~~l~Dt~-------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~   93 (190)
T 2cxx_A           45 NHKIIDMP-------GFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGK   93 (190)
T ss_dssp             TEEEEECC-------CBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETT
T ss_pred             CEEEEECC-------CccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcch
Confidence            68899999       765544322    2233333333322256788888888765

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=89.05  E-value=1.5  Score=44.51  Aligned_cols=59  Identities=19%  Similarity=0.130  Sum_probs=36.0

Q ss_pred             CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHH-HhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHH
Q 036659           25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIV-TCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTL   96 (300)
Q Consensus        25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~-~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~l   96 (300)
                      .|..+.+||||       |+++.......-.-++- -++.+++     +||+-..+ .+++.+...+..+..+
T Consensus        89 ~~~~i~LiDTp-------Gi~~~~~~~~~~~~~~fala~llss-----~lv~n~~~-~i~~~dl~~l~~v~e~  148 (592)
T 1f5n_A           89 PGHILVLLDTE-------GLGDVEKGDNQNDSWIFALAVLLSS-----TFVYNSIG-TINQQAMDQLYYVTEL  148 (592)
T ss_dssp             TTCEEEEEEEC-------CBCCGGGCCCTTHHHHHHHHHHHCS-----EEEEEEES-CSSHHHHHTTHHHHTH
T ss_pred             CCceEEEecCC-------CcCcccccchhHHHHHHHHHHHhcC-----eEEEECCC-CccHHHHHHHHHHHHH
Confidence            57899999999       88876542111122322 2333444     44444445 8999998887765544

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=89.02  E-value=2.9  Score=31.95  Aligned_cols=72  Identities=14%  Similarity=0.109  Sum_probs=38.7

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHHhchhhhcc
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSWQTLFGKNVFDY  104 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE-~~al~~lq~lFG~~i~~y  104 (300)
                      +..+.++|||       |.-+...    +..   ..+    .+.+++++|+.+..+-|-++ ...+..+...... .-.-
T Consensus        50 ~~~~~l~D~~-------G~~~~~~----~~~---~~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p  110 (167)
T 1c1y_A           50 QCMLEILDTA-------GTEQFTA----MRD---LYM----KNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVP  110 (167)
T ss_dssp             EEEEEEEEEC-------SSCSSTT----HHH---HHH----HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCC
T ss_pred             EEEEEEEECC-------ChHHHHH----HHH---HHh----ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCc
Confidence            3478899999       7443321    111   111    24789999999874332222 2223333333221 1234


Q ss_pred             eEEEEEcCCCCC
Q 036659          105 MIVVFTGGDELE  116 (300)
Q Consensus       105 ~IVlFT~gD~Le  116 (300)
                      .+||+|.-|...
T Consensus       111 iilv~nK~Dl~~  122 (167)
T 1c1y_A          111 MILVGNKCDLED  122 (167)
T ss_dssp             EEEEEECTTCGG
T ss_pred             EEEEEECccccc
Confidence            688888877544

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=88.47  E-value=0.93  Score=36.89  Aligned_cols=72  Identities=13%  Similarity=0.053  Sum_probs=37.2

Q ss_pred             eeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhch
Q 036659           23 RIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFGK   99 (300)
Q Consensus        23 ~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG~   99 (300)
                      .++|  ..+.++|||       |.-+.    ..+   ...++    .+.+++|+|+.+..+.+-++. ..+..+......
T Consensus        71 ~~~~~~~~l~i~Dt~-------G~~~~----~~~---~~~~~----~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~  132 (199)
T 2p5s_A           71 IVDGERTVLQLWDTA-------GQERF----RSI---AKSYF----RKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE  132 (199)
T ss_dssp             EETTEEEEEEEEECT-------TCTTC----HHH---HHHHH----HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC--
T ss_pred             EECCEEEEEEEEECC-------CCcch----hhh---HHHHH----hhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCC
Confidence            4455  468999999       74321    111   22222    357899999998744333321 122223222222


Q ss_pred             hhhcceEEEEEcCCC
Q 036659          100 NVFDYMIVVFTGGDE  114 (300)
Q Consensus       100 ~i~~y~IVlFT~gD~  114 (300)
                        -.-+|||.|--|-
T Consensus       133 --~~piilv~NK~Dl  145 (199)
T 2p5s_A          133 --TVPIMLVGNKADI  145 (199)
T ss_dssp             ---CCEEEEEECGGG
T ss_pred             --CCCEEEEEECccc
Confidence              1246777776664

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=88.42  E-value=8.7  Score=31.32  Aligned_cols=74  Identities=20%  Similarity=0.113  Sum_probs=41.6

Q ss_pred             eeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHHhc
Q 036659           23 RIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSWQTLFG   98 (300)
Q Consensus        23 ~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE--~~al~~lq~lFG   98 (300)
                      .++|.  .+.++|||       |.-+...           .......+.|++|+|+.+..+-+-++  ...+..+.... 
T Consensus        67 ~~~~~~~~~~i~Dt~-------G~~~~~~-----------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-  127 (207)
T 2fv8_A           67 EVDGKQVELALWDTA-------GQEDYDR-----------LRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-  127 (207)
T ss_dssp             EETTEEEEEEEEECT-------TCTTCTT-----------TGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS-
T ss_pred             EECCEEEEEEEEECC-------CcHHHHH-----------HHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-
Confidence            45664  68899999       7433221           11223468899999999874322222  22233333321 


Q ss_pred             hhhhcceEEEEEcCCCCCC
Q 036659           99 KNVFDYMIVVFTGGDELED  117 (300)
Q Consensus        99 ~~i~~y~IVlFT~gD~Le~  117 (300)
                      +  -.-+|||.|--|....
T Consensus       128 ~--~~piilv~nK~Dl~~~  144 (207)
T 2fv8_A          128 P--NVPIILVANKKDLRSD  144 (207)
T ss_dssp             T--TCCEEEEEECGGGGGC
T ss_pred             C--CCCEEEEEEchhhhcc
Confidence            1  2357888887775543

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=88.29  E-value=0.21  Score=49.61  Aligned_cols=83  Identities=17%  Similarity=0.195  Sum_probs=49.6

Q ss_pred             EEEEEEeCCCCcccCcccCCCCCCh--HH--HHHHHHHhhccCCCCCeEEEEEEeCCC-CCCHHHHHHHHHHHHHhchhh
Q 036659           27 VLEKVIDTRWVRHAIARLFDFSAGS--KF--VGKEIVTCIGMAKDGIHAVLVVFSVRS-RFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        27 r~v~VIDTP~w~~~~~glfd~~~~~--e~--v~kEI~~ci~l~~pGpHA~LLV~~v~~-rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ..+++||||       |+.+.....  ..  ....+...+    .+.|++|+|+.+.. .+++++...++.+..     .
T Consensus       154 ~~l~lIDTP-------G~~~~~~~~~~~~~~f~~~~~~~l----~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-----~  217 (550)
T 2qpt_A          154 ESISIIDTP-------GILSGAKQRVSRGYDFPAVLRWFA----ERVDLIILLFDAHKLEISDEFSEAIGALRG-----H  217 (550)
T ss_dssp             HHCEEEECC-------CBCC-------CCSCHHHHHHHHH----HHCSEEEEEEETTSCCCCHHHHHHHHHTTT-----C
T ss_pred             CCEEEEECc-------CCCCcchhHHHHHhhHHHHHHHHH----HhCCEEEEEEeCCcCCCCHHHHHHHHHHHh-----c
Confidence            368999999       877532110  00  111122222    36789999999974 368887777666542     2


Q ss_pred             hcceEEEEEcCCCCCCCcccHHHhhh
Q 036659          102 FDYMIVVFTGGDELEDNDETLEDYLG  127 (300)
Q Consensus       102 ~~y~IVlFT~gD~Le~~~~tledyl~  127 (300)
                      -..+|||++--|.+..  ..+...+.
T Consensus       218 ~~pvilVlNK~Dl~~~--~el~~~~~  241 (550)
T 2qpt_A          218 EDKIRVVLNKADMVET--QQLMRVYG  241 (550)
T ss_dssp             GGGEEEEEECGGGSCH--HHHHHHHH
T ss_pred             CCCEEEEEECCCccCH--HHHHHHHH
Confidence            2458899998887754  34555443

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=88.21  E-value=7.5  Score=29.96  Aligned_cols=78  Identities=17%  Similarity=0.055  Sum_probs=37.8

Q ss_pred             eeeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHH-HHHHHHHHhc
Q 036659           22 IRIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEA-ALHSWQTLFG   98 (300)
Q Consensus        22 ~~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~-al~~lq~lFG   98 (300)
                      ..++|.  .+.++|||       |.-...  .    ..+.   .....+.|++++|+.+..+-|-+... .+..+.....
T Consensus        45 ~~~~~~~~~~~~~D~~-------g~~~~~--~----~~~~---~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~  108 (175)
T 2nzj_A           45 LTVDGEDTTLVVVDTW-------EAEKLD--K----SWSQ---ESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ  108 (175)
T ss_dssp             EEETTEEEEEEEECCC--------------------CHHH---HHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-
T ss_pred             EEECCEEEEEEEEecC-------CCCccc--h----hhhH---HhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc
Confidence            456665  67899999       653311  0    1111   12345789999999997433322211 1122222211


Q ss_pred             hhhhcceEEEEEcCCCCC
Q 036659           99 KNVFDYMIVVFTGGDELE  116 (300)
Q Consensus        99 ~~i~~y~IVlFT~gD~Le  116 (300)
                      . .-.-+|||.|--|-..
T Consensus       109 ~-~~~piilv~NK~Dl~~  125 (175)
T 2nzj_A          109 A-DHVPIILVGNKADLAR  125 (175)
T ss_dssp             ----CCEEEEEECTTCTT
T ss_pred             c-CCCCEEEEEEChhhcc
Confidence            1 1234678888777544

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=88.17  E-value=1.7  Score=44.15  Aligned_cols=82  Identities=20%  Similarity=0.178  Sum_probs=50.0

Q ss_pred             CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHH
Q 036659           11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL   90 (300)
Q Consensus        11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al   90 (300)
                      ++|-.+... +..+++..+++||||       |..|+       ..+..+++.    ..+++|+|+......+.+....+
T Consensus        62 giTi~~~~~-~~~~~~~~i~liDTP-------G~~df-------~~~~~~~l~----~aD~~ilVvDa~~g~~~~t~~~~  122 (691)
T 1dar_A           62 GITITAAVT-TCFWKDHRINIIDTP-------GHVDF-------TIEVERSMR----VLDGAIVVFDSSQGVEPQSETVW  122 (691)
T ss_dssp             -----CCEE-EEEETTEEEEEECCC-------SSTTC-------HHHHHHHHH----HCSEEEEEEETTTCSCHHHHHHH
T ss_pred             ccccccceE-EEEECCeEEEEEECc-------Cccch-------HHHHHHHHH----HCCEEEEEEECCCCcchhhHHHH
Confidence            344443333 346789999999999       87664       234555554    46799999999877887776666


Q ss_pred             HHHHHHhchhhhcceEEEEEcCCCCC
Q 036659           91 HSWQTLFGKNVFDYMIVVFTGGDELE  116 (300)
Q Consensus        91 ~~lq~lFG~~i~~y~IVlFT~gD~Le  116 (300)
                      ..+.. ++    .-.||+.+--|...
T Consensus       123 ~~~~~-~~----~p~ivviNKiD~~~  143 (691)
T 1dar_A          123 RQAEK-YK----VPRIAFANKMDKTG  143 (691)
T ss_dssp             HHHHH-TT----CCEEEEEECTTSTT
T ss_pred             HHHHH-cC----CCEEEEEECCCccc
Confidence            55433 11    23556666666554

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=88.12  E-value=0.85  Score=42.64  Aligned_cols=71  Identities=14%  Similarity=0.175  Sum_probs=47.1

Q ss_pred             eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659           24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD  103 (300)
Q Consensus        24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~  103 (300)
                      .+++.+++||||       |.-++       .+.....+    .+.+++|+|+.+....+.+....+..+.. .|   ..
T Consensus        72 ~~~~~~~iiDtp-------G~~~f-------~~~~~~~~----~~aD~~ilVvda~~g~~~qt~~~l~~~~~-~~---ip  129 (405)
T 2c78_A           72 TAKRHYSHVDCP-------GHADY-------IKNMITGA----AQMDGAILVVSAADGPMPQTREHILLARQ-VG---VP  129 (405)
T ss_dssp             CSSCEEEEEECC-------CSGGG-------HHHHHHHH----TTCSSEEEEEETTTCCCHHHHHHHHHHHH-TT---CC
T ss_pred             cCCeEEEEEECC-------ChHHH-------HHHHHHHH----HHCCEEEEEEECCCCCcHHHHHHHHHHHH-cC---CC
Confidence            457899999999       75442       23333333    37889999999976777766665554433 22   34


Q ss_pred             ceEEEEEcCCCCC
Q 036659          104 YMIVVFTGGDELE  116 (300)
Q Consensus       104 y~IVlFT~gD~Le  116 (300)
                      ++||+.+--|...
T Consensus       130 ~iivviNK~Dl~~  142 (405)
T 2c78_A          130 YIVVFMNKVDMVD  142 (405)
T ss_dssp             CEEEEEECGGGCC
T ss_pred             EEEEEEECccccC
Confidence            5778888777553

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=88.02  E-value=4.2  Score=31.23  Aligned_cols=50  Identities=22%  Similarity=0.043  Sum_probs=24.7

Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhch--hhhcceEEEEEcCCCCCC
Q 036659           66 KDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGK--NVFDYMIVVFTGGDELED  117 (300)
Q Consensus        66 ~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~--~i~~y~IVlFT~gD~Le~  117 (300)
                      ..+.|++++|+.+..+-|-++  ...++..+...  ..-.-.|||.|--|-...
T Consensus        70 ~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  121 (166)
T 3q72_A           70 MAMGDAYVIVYSVTDKGSFEK--ASELRVQLRRARQTDDVPIILVGNKSDLVRS  121 (166)
T ss_dssp             ---CCEEEEEEETTCHHHHHH--HHHHHHHHHHCC---CCCEEEEEECTTCCSS
T ss_pred             hhhCCEEEEEEECCCHHHHHH--HHHHHHHHHHhcCCCCCCEEEEEeccccccc
Confidence            367899999999974322221  11222222211  111346778887775543

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=87.99  E-value=0.69  Score=38.02  Aligned_cols=75  Identities=1%  Similarity=0.009  Sum_probs=43.3

Q ss_pred             CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCC---CCCCHHHHHHHHHHHHHhchhh
Q 036659           25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVR---SRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~---~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      .+..+.++|||       |.-+..       ..+...+.-..+++|++|+|+.+.   ..|+.-    ...+..++....
T Consensus        53 ~~~~~~l~Dt~-------G~~~~~-------~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~----~~~~~~~~~~~~  114 (218)
T 1nrj_B           53 DGSGVTLVDFP-------GHVKLR-------YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTT----AEFLVDILSITE  114 (218)
T ss_dssp             GGSSCEEEECC-------CCGGGT-------HHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHH----HHHHHHHHHHHH
T ss_pred             eCceEEEEECC-------CcHHHH-------HHHHHHHHhccccCCEEEEEEECCCChHHHHHH----HHHHHHHHhccc
Confidence            45678999999       763322       122222221124689999999987   344432    234444443321


Q ss_pred             -----hcceEEEEEcCCCCCC
Q 036659          102 -----FDYMIVVFTGGDELED  117 (300)
Q Consensus       102 -----~~y~IVlFT~gD~Le~  117 (300)
                           -...|||+|.-|....
T Consensus       115 ~~~~~~~p~ilv~nK~Dl~~~  135 (218)
T 1nrj_B          115 SSCENGIDILIACNKSELFTA  135 (218)
T ss_dssp             HHSTTCCCEEEEEECTTSTTC
T ss_pred             ccccCCCCEEEEEEchHhccc
Confidence                 2347888888886654

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=87.51  E-value=2.4  Score=41.79  Aligned_cols=72  Identities=13%  Similarity=0.163  Sum_probs=44.9

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ..+++..+++||||       |..|+.       .+..+++    .+.+++|+|+.............+..+.   ..++
T Consensus        77 ~~~~~~~i~liDTP-------G~~df~-------~~~~~~l----~~aD~~IlVvDa~~g~~~~t~~~~~~~~---~~~i  135 (529)
T 2h5e_A           77 FPYHDCLVNLLDTP-------GHEDFS-------EDTYRTL----TAVDCCLMVIDAAKGVEDRTRKLMEVTR---LRDT  135 (529)
T ss_dssp             EEETTEEEEEECCC-------CSTTCC-------HHHHHGG----GGCSEEEEEEETTTCSCHHHHHHHHHHT---TTTC
T ss_pred             EEECCeEEEEEECC-------CChhHH-------HHHHHHH----HHCCEEEEEEeCCccchHHHHHHHHHHH---HcCC
Confidence            35689999999999       876654       2344444    3788999999997666655444433322   1111


Q ss_pred             hcceEEEEEcCCCCC
Q 036659          102 FDYMIVVFTGGDELE  116 (300)
Q Consensus       102 ~~y~IVlFT~gD~Le  116 (300)
                        -.||+.+--|...
T Consensus       136 --piivviNK~Dl~~  148 (529)
T 2h5e_A          136 --PILTFMNKLDRDI  148 (529)
T ss_dssp             --CEEEEEECTTSCC
T ss_pred             --CEEEEEcCcCCcc
Confidence              2556666556443

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=87.44  E-value=2.8  Score=33.72  Aligned_cols=71  Identities=14%  Similarity=-0.036  Sum_probs=38.1

Q ss_pred             EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHHhchh--hhc
Q 036659           27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSWQTLFGKN--VFD  103 (300)
Q Consensus        27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~-~al~~lq~lFG~~--i~~  103 (300)
                      ..+.++|||       |.-+....           ......+.|++|+|+.+..+.+-++. ..+..+....+..  .-.
T Consensus        57 ~~~~l~Dt~-------G~~~~~~~-----------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  118 (207)
T 1vg8_A           57 VTMQIWDTA-------GQERFQSL-----------GVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF  118 (207)
T ss_dssp             EEEEEEEEC-------SSGGGSCS-----------CCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGS
T ss_pred             EEEEEEeCC-------CcHHHHHh-----------HHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCC
Confidence            478999999       53221110           11123578999999998743332221 2222333333211  123


Q ss_pred             ceEEEEEcCCCC
Q 036659          104 YMIVVFTGGDEL  115 (300)
Q Consensus       104 y~IVlFT~gD~L  115 (300)
                      ..|||.|.-|..
T Consensus       119 piilv~nK~Dl~  130 (207)
T 1vg8_A          119 PFVVLGNKIDLE  130 (207)
T ss_dssp             CEEEEEECTTSS
T ss_pred             cEEEEEECCCCc
Confidence            568888877754

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=87.42  E-value=3.6  Score=38.51  Aligned_cols=69  Identities=12%  Similarity=0.171  Sum_probs=44.5

Q ss_pred             EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCC-CHHHHHHHHHHHHHhchhhhcce
Q 036659           27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSWQTLFGKNVFDYM  105 (300)
Q Consensus        27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rf-T~EE~~al~~lq~lFG~~i~~y~  105 (300)
                      +.+++||||       |-       +...++.    .-.....+++|||+.+...+ ..+....+..+. .+|.   ..+
T Consensus        81 ~~i~iiDtP-------Gh-------~~f~~~~----~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~-~l~~---~~i  138 (408)
T 1s0u_A           81 RRVSFVDSP-------GH-------ETLMATM----LSGASLMDGAILVIAANEPCPQPQTKEHLMALE-ILGI---DKI  138 (408)
T ss_dssp             EEEEEEECS-------SH-------HHHHHHH----HTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHH-HTTC---CCE
T ss_pred             cEEEEEECC-------CH-------HHHHHHH----HHhHhhCCEEEEEEECCCCCCCchhHHHHHHHH-HcCC---CeE
Confidence            789999999       63       2222332    22345789999999998655 555555555443 3342   467


Q ss_pred             EEEEEcCCCCCC
Q 036659          106 IVVFTGGDELED  117 (300)
Q Consensus       106 IVlFT~gD~Le~  117 (300)
                      ||+++--|....
T Consensus       139 ivv~NK~Dl~~~  150 (408)
T 1s0u_A          139 IIVQNKIDLVDE  150 (408)
T ss_dssp             EEEEECTTSSCT
T ss_pred             EEEEEccCCCCH
Confidence            888888886543

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=87.12  E-value=1.4  Score=41.20  Aligned_cols=71  Identities=13%  Similarity=0.167  Sum_probs=46.6

Q ss_pred             eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659           24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD  103 (300)
Q Consensus        24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~  103 (300)
                      .+++.+++||||       |.-+      + .+.+..    ...+.+++|||+.+......+....+..+.. .|   ..
T Consensus        63 ~~~~~~~iiDtp-------G~~~------f-~~~~~~----~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~---vp  120 (397)
T 1d2e_A           63 TAARHYAHTDCP-------GHAD------Y-VKNMIT----GTAPLDGCILVVAANDGPMPQTREHLLLARQ-IG---VE  120 (397)
T ss_dssp             CSSCEEEEEECS-------SHHH------H-HHHHHH----TSSCCSEEEEEEETTTCSCHHHHHHHHHHHH-TT---CC
T ss_pred             cCCeEEEEEECC-------ChHH------H-HHHHHh----hHhhCCEEEEEEECCCCCCHHHHHHHHHHHH-cC---CC
Confidence            357899999999       7432      2 233333    3458899999999986677666665544432 22   34


Q ss_pred             ceEEEEEcCCCCC
Q 036659          104 YMIVVFTGGDELE  116 (300)
Q Consensus       104 y~IVlFT~gD~Le  116 (300)
                      +.||+.+--|...
T Consensus       121 ~iivviNK~Dl~~  133 (397)
T 1d2e_A          121 HVVVYVNKADAVQ  133 (397)
T ss_dssp             CEEEEEECGGGCS
T ss_pred             eEEEEEECcccCC
Confidence            5678888777553

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=87.03  E-value=4.9  Score=32.36  Aligned_cols=74  Identities=18%  Similarity=0.033  Sum_probs=38.5

Q ss_pred             eeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHH-HHHHHHHHhch
Q 036659           23 RIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEA-ALHSWQTLFGK   99 (300)
Q Consensus        23 ~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~-al~~lq~lFG~   99 (300)
                      .+++  ..+.++|||       |.-+    ....    ..++    .+.+++++|+.+..+-|-++.. .+..+......
T Consensus        70 ~~~~~~~~~~l~Dt~-------G~~~----~~~~----~~~~----~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~  130 (196)
T 2atv_A           70 TIDDEVVSMEILDTA-------GQED----TIQR----EGHM----RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP  130 (196)
T ss_dssp             EETTEEEEEEEEECC-------CCCC----CHHH----HHHH----HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT
T ss_pred             EECCEEEEEEEEECC-------CCCc----ccch----hhhh----ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCC
Confidence            4555  468899999       7544    1111    1122    2458999999987433322211 12223322211


Q ss_pred             hhhcceEEEEEcCCCCC
Q 036659          100 NVFDYMIVVFTGGDELE  116 (300)
Q Consensus       100 ~i~~y~IVlFT~gD~Le  116 (300)
                       .-.-.|||.|--|...
T Consensus       131 -~~~piilv~NK~Dl~~  146 (196)
T 2atv_A          131 -KNVTLILVGNKADLDH  146 (196)
T ss_dssp             -SCCCEEEEEECGGGGG
T ss_pred             -CCCcEEEEEECccccc
Confidence             1124677788777443

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=86.66  E-value=0.99  Score=36.73  Aligned_cols=73  Identities=16%  Similarity=0.072  Sum_probs=35.8

Q ss_pred             eeCC--EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh
Q 036659           23 RIQV--VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN  100 (300)
Q Consensus        23 ~~~G--r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~  100 (300)
                      .++|  ..+.++|||       |.-+....           ......+.|++++|+.+..+-|-++  ...++..+....
T Consensus        76 ~~~~~~~~~~i~Dt~-------G~~~~~~~-----------~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~  135 (199)
T 3l0i_B           76 ELDGKTIKLQIWDTA-------GQERFRTI-----------TSSYYRGAHGIIVVYDVTDQESFNN--VKQWLQEIDRYA  135 (199)
T ss_dssp             EETTEEEEEEEECCT-------TCTTCCCC-----------SCC--CCCSEEEECC-CCCSHHHHH--HHHHHHHHHSCC
T ss_pred             EECCEEEEEEEEECC-------CcHhHHHH-----------HHHHhhcCCEEEEEEECCCHHHHHH--HHHHHHHHHHhc
Confidence            4566  468899999       53222111           1223468899999999875433222  222333332221


Q ss_pred             h-hcceEEEEEcCCCC
Q 036659          101 V-FDYMIVVFTGGDEL  115 (300)
Q Consensus       101 i-~~y~IVlFT~gD~L  115 (300)
                      . -.-+|||.|--|..
T Consensus       136 ~~~~p~ilv~nK~Dl~  151 (199)
T 3l0i_B          136 SENVNKLLVGNKCDLT  151 (199)
T ss_dssp             -CCSEEEEC-CCSSCC
T ss_pred             cCCCCEEEEEECccCC
Confidence            1 12345666655643

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=86.19  E-value=3.2  Score=39.89  Aligned_cols=72  Identities=8%  Similarity=0.147  Sum_probs=44.5

Q ss_pred             eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCC-------CCHHHHHHHHHHHH
Q 036659           23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSWQT   95 (300)
Q Consensus        23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r-------fT~EE~~al~~lq~   95 (300)
                      ...++.+++||||       |.-+       ..+.....+    .+.+++|||+.+...       +.......+..+ .
T Consensus       107 ~~~~~~~~iiDTP-------G~~~-------f~~~~~~~~----~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~-~  167 (483)
T 3p26_A          107 STHRANFTIVDAP-------GHRD-------FVPNAIMGI----SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-S  167 (483)
T ss_dssp             ECSSCEEEEECCC-------CCGG-------GHHHHHHHH----TTCSEEEEEEECCC------CCCCHHHHHHHHHH-H
T ss_pred             ecCCceEEEEECC-------CcHH-------HHHHHHHhh----hhCCEEEEEEECCCCccccccchhhhHHHHHHHH-H
Confidence            3568899999999       7522       233444443    468999999999743       333433333332 2


Q ss_pred             HhchhhhcceEEEEEcCCCCC
Q 036659           96 LFGKNVFDYMIVVFTGGDELE  116 (300)
Q Consensus        96 lFG~~i~~y~IVlFT~gD~Le  116 (300)
                      ..|   ...+||+.+--|-..
T Consensus       168 ~~~---~~~iIvviNK~Dl~~  185 (483)
T 3p26_A          168 SLG---IHNLIIAMNKMDNVD  185 (483)
T ss_dssp             HTT---CCCEEEEEECGGGGT
T ss_pred             HcC---CCcEEEEEECcCccc
Confidence            333   346888888878554

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=86.18  E-value=12  Score=30.19  Aligned_cols=77  Identities=9%  Similarity=0.137  Sum_probs=43.2

Q ss_pred             EEEEEeCCCCcccCcccCCCCCCh---HHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659           28 LEKVIDTRWVRHAIARLFDFSAGS---KFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY  104 (300)
Q Consensus        28 ~v~VIDTP~w~~~~~glfd~~~~~---e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y  104 (300)
                      .+.++|||       |+.+...+.   +.....+...+. .....+++++|+.+....+..+......+ ..+|    .-
T Consensus        73 ~~~l~Dt~-------G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~d~~~~~~~~~~~~~~~~-~~~~----~~  139 (210)
T 1pui_A           73 GKRLVDLP-------GYGYAEVPEEMKRKWQRALGEYLE-KRQSLQGLVVLMDIRHPLKDLDQQMIEWA-VDSN----IA  139 (210)
T ss_dssp             TEEEEECC-------CCC------CCHHHHHHHHHHHHH-HCTTEEEEEEEEETTSCCCHHHHHHHHHH-HHTT----CC
T ss_pred             CEEEEECc-------CCcccccCHHHHHHHHHHHHHHHH-hhhcccEEEEEEECCCCCchhHHHHHHHH-HHcC----CC
Confidence            57789999       654322211   122222322222 24678999999999867776655544443 3333    23


Q ss_pred             eEEEEEcCCCCCC
Q 036659          105 MIVVFTGGDELED  117 (300)
Q Consensus       105 ~IVlFT~gD~Le~  117 (300)
                      .++|.+.-|.+.+
T Consensus       140 ~~~v~nK~D~~s~  152 (210)
T 1pui_A          140 VLVLLTKADKLAS  152 (210)
T ss_dssp             EEEEEECGGGSCH
T ss_pred             eEEEEecccCCCc
Confidence            5677888887754

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=86.16  E-value=5.8  Score=31.55  Aligned_cols=70  Identities=16%  Similarity=0.155  Sum_probs=37.3

Q ss_pred             EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh-hcce
Q 036659           27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV-FDYM  105 (300)
Q Consensus        27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i-~~y~  105 (300)
                      ..+.++|||       |.-+...           .......+.|++|+|+.+..+-|-++  +...|...+-... -..+
T Consensus        55 ~~~~i~Dt~-------G~~~~~~-----------~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~i~~~~~~~pi  114 (184)
T 1m7b_A           55 IELSLWDTS-------GSPYYDN-----------VRPLSYPDSDAVLICFDISRPETLDS--VLKKWKGEIQEFCPNTKM  114 (184)
T ss_dssp             EEEEEEEEC-------CSGGGTT-----------TGGGGCTTCSEEEEEEETTCHHHHHH--HHHTHHHHHHHHCTTCEE
T ss_pred             EEEEEEECC-------CChhhhh-----------hHHhhcCCCcEEEEEEECCCHHHHHH--HHHHHHHHHHHHCCCCCE
Confidence            478899999       6422111           11224568999999999974322222  1122222221111 1346


Q ss_pred             EEEEEcCCCCC
Q 036659          106 IVVFTGGDELE  116 (300)
Q Consensus       106 IVlFT~gD~Le  116 (300)
                      |||.|.-|...
T Consensus       115 ilv~nK~Dl~~  125 (184)
T 1m7b_A          115 LLVGCKSDLRT  125 (184)
T ss_dssp             EEEEECGGGGG
T ss_pred             EEEEEcchhhc
Confidence            77777777543

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=86.02  E-value=0.79  Score=45.76  Aligned_cols=82  Identities=12%  Similarity=0.083  Sum_probs=50.4

Q ss_pred             CCCCccccCCCceee-CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHH
Q 036659           10 FGAPKTAPLPPTIRI-QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEA   88 (300)
Q Consensus        10 ~~vT~tC~~~~t~~~-~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~   88 (300)
                      .++|....... ..+ +|+.+++||||       |.-++...           ......+.+++|||+.+....+.+...
T Consensus        35 ~giT~~i~~~~-v~~~~g~~i~~iDTP-------Ghe~f~~~-----------~~~~~~~aD~vILVVDa~dg~~~qt~e   95 (537)
T 3izy_P           35 GGITQHIGAFL-VSLPSGEKITFLDTP-------GHAAFSAM-----------RARGTQVTDIVILVVAADDGVMKQTVE   95 (537)
T ss_dssp             CCBCCCTTSCC-BCSSCSSCCBCEECS-------SSCCTTTS-----------BBSSSBSBSSCEEECBSSSCCCHHHHH
T ss_pred             CceeEEEeEEE-EEeCCCCEEEEEECC-------ChHHHHHH-----------HHHHHccCCEEEEEEECCCCccHHHHH
Confidence            45566555443 233 67899999999       64332211           122346789999999998778877666


Q ss_pred             HHHHHHHHhchhhhcceEEEEEcCCCC
Q 036659           89 ALHSWQTLFGKNVFDYMIVVFTGGDEL  115 (300)
Q Consensus        89 al~~lq~lFG~~i~~y~IVlFT~gD~L  115 (300)
                      .+..+..   .++  -+||+.+--|..
T Consensus        96 ~l~~~~~---~~v--PiIVViNKiDl~  117 (537)
T 3izy_P           96 SIQHAKD---AHV--PIVLAINKCDKA  117 (537)
T ss_dssp             HHHHHHT---TTC--CEEECCBSGGGT
T ss_pred             HHHHHHH---cCC--cEEEEEeccccc
Confidence            6655443   222  356666665643

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=85.79  E-value=1.6  Score=43.19  Aligned_cols=74  Identities=12%  Similarity=0.047  Sum_probs=46.8

Q ss_pred             CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcc
Q 036659           25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDY  104 (300)
Q Consensus        25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y  104 (300)
                      ++..+++||||       |....   .+.+..|+.......  .||.+|+|+......+     ++... ..|.+. ...
T Consensus       182 ~~~DvvIIDTp-------G~~~~---~~~l~~el~~~~~~i--~pd~vllVvDa~~g~~-----~~~~a-~~~~~~-~~i  242 (504)
T 2j37_W          182 ENFEIIIVDTS-------GRHKQ---EDSLFEEMLQVANAI--QPDNIVYVMDASIGQA-----CEAQA-KAFKDK-VDV  242 (504)
T ss_dssp             TTCCEEEEEEC-------CCCTT---CHHHHHHHHHHHHHH--CCSEEEEEEETTCCTT-----HHHHH-HHHHHH-HCC
T ss_pred             CCCcEEEEeCC-------CCccc---chhHHHHHHHHHhhh--cCceEEEEEecccccc-----HHHHH-HHHHhh-cCc
Confidence            67899999999       76653   234445555443322  6889999999863322     23222 345553 555


Q ss_pred             eEEEEEcCCCCCC
Q 036659          105 MIVVFTGGDELED  117 (300)
Q Consensus       105 ~IVlFT~gD~Le~  117 (300)
                      .+||+|.-|....
T Consensus       243 ~gvVlNK~D~~~~  255 (504)
T 2j37_W          243 ASVIVTKLDGHAK  255 (504)
T ss_dssp             CCEEEECTTSCCC
T ss_pred             eEEEEeCCccccc
Confidence            7899998886643

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=85.47  E-value=7.9  Score=32.04  Aligned_cols=42  Identities=12%  Similarity=0.138  Sum_probs=26.9

Q ss_pred             eeeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCC
Q 036659           22 IRIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSR   81 (300)
Q Consensus        22 ~~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r   81 (300)
                      ..++|.  .+.++|||       |.-.      +     .........+.+++++|+.+..+
T Consensus        68 ~~~~~~~~~l~l~Dt~-------G~~~------~-----~~~~~~~~~~~d~~i~v~D~~~~  111 (201)
T 2ew1_A           68 VEINGEKVKLQIWDTA-------GQER------F-----RSITQSYYRSANALILTYDITCE  111 (201)
T ss_dssp             EEETTEEEEEEEEEEC-------CSGG------G-----HHHHGGGSTTCSEEEEEEETTCH
T ss_pred             EEECCEEEEEEEEECC-------CcHH------H-----HHHHHHHHhcCCEEEEEEECCCH
Confidence            346664  78899999       6311      1     11122345688999999998743

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=84.48  E-value=4  Score=33.00  Aligned_cols=38  Identities=18%  Similarity=0.156  Sum_probs=24.8

Q ss_pred             ceeeCCEE--EEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCC
Q 036659           21 TIRIQVVL--EKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSR   81 (300)
Q Consensus        21 t~~~~Gr~--v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r   81 (300)
                      +..++|..  +.++|||       |.-...            .    ..+.|++++|+.+..+
T Consensus        59 ~~~~~~~~~~l~i~Dt~-------G~~~~~------------~----~~~~~~~i~v~d~~~~   98 (184)
T 3ihw_A           59 EIVVDGQSYLLLIRDEG-------GPPELQ------------F----AAWVDAVVFVFSLEDE   98 (184)
T ss_dssp             EEEETTEEEEEEEEECS-------SSCCHH------------H----HHHCSEEEEEEETTCH
T ss_pred             EEEECCEEEEEEEEECC-------CChhhh------------e----ecCCCEEEEEEECcCH
Confidence            35677854  5669999       643221            1    1247899999999743

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=84.16  E-value=2.6  Score=42.30  Aligned_cols=83  Identities=10%  Similarity=0.135  Sum_probs=49.8

Q ss_pred             CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCC-------CC
Q 036659           11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSR-------FS   83 (300)
Q Consensus        11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r-------fT   83 (300)
                      |+|...... .....++.+++||||       |.-+           ..+-+.....+.+++|+|+.+...       +.
T Consensus       230 GiTid~~~~-~~~~~~~~~~iiDTP-------G~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~  290 (611)
T 3izq_1          230 GVTVSICTS-HFSTHRANFTIVDAP-------GHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLD  290 (611)
T ss_dssp             TTCCSCSCC-EEECSSCEEEEEECC-------SSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTT
T ss_pred             CeeEeeeeE-EEecCCceEEEEECC-------CCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhh
Confidence            455544433 245678899999999       7522           122333455689999999998621       22


Q ss_pred             HHHHHHHHHHHHHhchhhhcceEEEEEcCCCCC
Q 036659           84 QEEEAALHSWQTLFGKNVFDYMIVVFTGGDELE  116 (300)
Q Consensus        84 ~EE~~al~~lq~lFG~~i~~y~IVlFT~gD~Le  116 (300)
                      .+....+..+ ..+|   ..++|||.+--|...
T Consensus       291 ~qt~e~l~~~-~~lg---i~~iIVVvNKiDl~~  319 (611)
T 3izq_1          291 GQTKEHMLLA-SSLG---IHNLIIAMNKMDNVD  319 (611)
T ss_dssp             SHHHHHHHHH-HTTT---CCEEEEEEECTTTTT
T ss_pred             hHHHHHHHHH-HHcC---CCeEEEEEecccccc
Confidence            3333333322 2233   356888899888664

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=83.61  E-value=11  Score=38.11  Aligned_cols=66  Identities=17%  Similarity=0.129  Sum_probs=40.1

Q ss_pred             EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhcceE
Q 036659           27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFDYMI  106 (300)
Q Consensus        27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~y~I  106 (300)
                      ..+++||||       |.-|+       ..++.+.+..    .+++|||+.+....+.+....+....   ..++  -.|
T Consensus        71 ~~l~liDTP-------Gh~dF-------~~ev~~~l~~----aD~aILVVDa~~gv~~qt~~~~~~~~---~~~i--piI  127 (599)
T 3cb4_D           71 YQLNFIDTP-------GHVDF-------SYEVSRSLAA----CEGALLVVDAGQGVEAQTLANCYTAM---EMDL--EVV  127 (599)
T ss_dssp             EEEEEEECC-------CCGGG-------HHHHHHHHHH----CSEEEEEEETTTCCCTHHHHHHHHHH---HTTC--EEE
T ss_pred             EEEEEEECC-------CchHH-------HHHHHHHHHH----CCEEEEEEECCCCCCHHHHHHHHHHH---HCCC--CEE
Confidence            689999999       86553       2456666543    47899999987666655554443332   2222  245


Q ss_pred             EEEEcCCCC
Q 036659          107 VVFTGGDEL  115 (300)
Q Consensus       107 VlFT~gD~L  115 (300)
                      |+.+--|..
T Consensus       128 vViNKiDl~  136 (599)
T 3cb4_D          128 PVLNKIDLP  136 (599)
T ss_dssp             EEEECTTST
T ss_pred             EeeeccCcc
Confidence            555555543

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=83.39  E-value=2.6  Score=40.20  Aligned_cols=71  Identities=11%  Similarity=0.052  Sum_probs=42.5

Q ss_pred             eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCC-------HHHHHHHHHHHH
Q 036659           23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFS-------QEEEAALHSWQT   95 (300)
Q Consensus        23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT-------~EE~~al~~lq~   95 (300)
                      ..+++.+++||||       |.-+       ..+.+...    ..+.+++|||+.+....+       .+.+..+..+. 
T Consensus        91 ~~~~~~~~iiDTP-------Gh~~-------f~~~~~~~----~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~-  151 (439)
T 3j2k_7           91 ETEKKHFTILDAP-------GHKS-------FVPNMIGG----ASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK-  151 (439)
T ss_pred             ecCCeEEEEEECC-------ChHH-------HHHHHHhh----HhhCCEEEEEEECCCCccccccCCCchHHHHHHHHH-
Confidence            4578999999999       7422       22333322    347899999999875433       23333333322 


Q ss_pred             HhchhhhcceEEEEEcCCCC
Q 036659           96 LFGKNVFDYMIVVFTGGDEL  115 (300)
Q Consensus        96 lFG~~i~~y~IVlFT~gD~L  115 (300)
                      ..|   ..++||+.+--|..
T Consensus       152 ~~~---v~~iIvviNK~Dl~  168 (439)
T 3j2k_7          152 TAG---VKHLIVLINKMDDP  168 (439)
T ss_pred             HcC---CCeEEEEeecCCCc
Confidence            233   34678888877753

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=82.87  E-value=1  Score=37.14  Aligned_cols=74  Identities=20%  Similarity=0.070  Sum_probs=39.9

Q ss_pred             eeCCEEEE--EEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHH--HHHHHHHHhc
Q 036659           23 RIQVVLEK--VIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEA--ALHSWQTLFG   98 (300)
Q Consensus        23 ~~~Gr~v~--VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~--al~~lq~lFG   98 (300)
                      .++|..+.  ++|||       |.-+..           ........+.|++++|+.+..+-|-++..  .+..+.... 
T Consensus        72 ~~~~~~~~l~i~Dt~-------G~~~~~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-  132 (204)
T 4gzl_A           72 MVDGKPVNLGLWDTA-------GLEDYD-----------RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-  132 (204)
T ss_dssp             ECC-CEEEEEEEEEC-------CSGGGT-----------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-
T ss_pred             EECCEEEEEEEEECC-------CchhhH-----------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-
Confidence            45565544  99999       652221           12233456899999999997443333321  222222222 


Q ss_pred             hhhhcceEEEEEcCCCCCC
Q 036659           99 KNVFDYMIVVFTGGDELED  117 (300)
Q Consensus        99 ~~i~~y~IVlFT~gD~Le~  117 (300)
                        .-.-+|||.|--|-...
T Consensus       133 --~~~piilv~nK~Dl~~~  149 (204)
T 4gzl_A          133 --PNTPIILVGTKLDLRDD  149 (204)
T ss_dssp             --SSCCEEEEEECHHHHTC
T ss_pred             --CCCCEEEEEechhhccc
Confidence              12346777776664443

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=82.25  E-value=13  Score=29.96  Aligned_cols=76  Identities=9%  Similarity=-0.034  Sum_probs=44.4

Q ss_pred             ceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh
Q 036659           21 TIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN  100 (300)
Q Consensus        21 t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~  100 (300)
                      +..++|..+.++|||       |.-+....           ....-.+.|++++|+.+..+-|-++  ....+..+....
T Consensus        61 ~~~~~~~~~~i~Dt~-------G~~~~~~~-----------~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~  120 (190)
T 1m2o_B           61 ELAIGNIKFTTFDLG-------GHIQARRL-----------WKDYFPEVNGIVFLVDAADPERFDE--ARVELDALFNIA  120 (190)
T ss_dssp             EEEETTEEEEEEECC-------CSGGGTTS-----------GGGGCTTCCEEEEEEETTCGGGHHH--HHHHHHHHHTCG
T ss_pred             EEEECCEEEEEEECC-------CCHHHHHH-----------HHHHHhcCCEEEEEEECCChHHHHH--HHHHHHHHHcch
Confidence            356789999999999       65332211           1122358899999999975433332  223444444321


Q ss_pred             --hhcceEEEEEcCCCCC
Q 036659          101 --VFDYMIVVFTGGDELE  116 (300)
Q Consensus       101 --i~~y~IVlFT~gD~Le  116 (300)
                        .-.-.|||.+--|...
T Consensus       121 ~~~~~piilv~NK~Dl~~  138 (190)
T 1m2o_B          121 ELKDVPFVILGNKIDAPN  138 (190)
T ss_dssp             GGTTCCEEEEEECTTSTT
T ss_pred             hhcCCCEEEEEECCCCcC
Confidence              1234677777767543

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=82.13  E-value=16  Score=36.96  Aligned_cols=48  Identities=17%  Similarity=0.251  Sum_probs=33.6

Q ss_pred             EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHH
Q 036659           27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHS   92 (300)
Q Consensus        27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~   92 (300)
                      ..+++||||       |..|+       ..++.+.+.    +.+++|||+.+....+.+....+..
T Consensus        73 ~~inliDTP-------Gh~dF-------~~ev~r~l~----~aD~aILVVDa~~gv~~qt~~~~~~  120 (600)
T 2ywe_A           73 YKLHLIDTP-------GHVDF-------SYEVSRALA----ACEGALLLIDASQGIEAQTVANFWK  120 (600)
T ss_dssp             EEEEEECCC-------CSGGG-------HHHHHHHHH----TCSEEEEEEETTTBCCHHHHHHHHH
T ss_pred             EEEEEEECC-------CcHhH-------HHHHHHHHH----hCCEEEEEEECCCCccHHHHHHHHH
Confidence            689999999       87653       245666654    5589999999976776655544433

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=81.43  E-value=2.4  Score=38.99  Aligned_cols=75  Identities=17%  Similarity=0.178  Sum_probs=47.0

Q ss_pred             CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHh---hcc-CCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchh
Q 036659           25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTC---IGM-AKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKN  100 (300)
Q Consensus        25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~c---i~l-~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~  100 (300)
                      .+..+.+||||       |..   ...+.+..|+.+.   +.- .+.-||.+++|+...   |.  ..++...+ .|.+ 
T Consensus       185 ~~~dvvIiDtp-------g~~---~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~---t~--~~~l~~a~-~~~~-  247 (306)
T 1vma_A          185 RNKDVVIIDTA-------GRL---HTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDAT---TG--QNGLVQAK-IFKE-  247 (306)
T ss_dssp             TTCSEEEEEEC-------CCC---SCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGG---GH--HHHHHHHH-HHHH-
T ss_pred             cCCCEEEEECC-------Cch---hhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECC---CC--HHHHHHHH-HHHh-
Confidence            46679999999       752   2344555555443   322 244599999999875   44  34555553 3444 


Q ss_pred             hhcceEEEEEcCCCCC
Q 036659          101 VFDYMIVVFTGGDELE  116 (300)
Q Consensus       101 i~~y~IVlFT~gD~Le  116 (300)
                      ....+-||+|.-|.-.
T Consensus       248 ~~~i~gvVlTk~D~~~  263 (306)
T 1vma_A          248 AVNVTGIILTKLDGTA  263 (306)
T ss_dssp             HSCCCEEEEECGGGCS
T ss_pred             cCCCCEEEEeCCCCcc
Confidence            3667788899877543

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=81.25  E-value=13  Score=30.74  Aligned_cols=70  Identities=16%  Similarity=0.155  Sum_probs=37.0

Q ss_pred             EEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh-hcce
Q 036659           27 VLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV-FDYM  105 (300)
Q Consensus        27 r~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i-~~y~  105 (300)
                      ..+.++|||       |.-+...           .......+.+++|+|+.+..+-|-++  +...|...+-... -.-.
T Consensus        76 ~~l~i~Dt~-------G~~~~~~-----------~~~~~~~~~d~~ilv~D~~~~~s~~~--~~~~~~~~i~~~~~~~pi  135 (205)
T 1gwn_A           76 IELSLWDTS-------GSPYYDN-----------VRPLSYPDSDAVLICFDISRPETLDS--VLKKWKGEIQEFCPNTKM  135 (205)
T ss_dssp             EEEEEEEEC-------CSGGGTT-----------TGGGGCTTCSEEEEEEETTCHHHHHH--HHHTHHHHHHHHCTTCEE
T ss_pred             EEEEEEeCC-------CcHhhhH-----------HHHhhccCCCEEEEEEECCCHHHHHH--HHHHHHHHHHHHCCCCCE
Confidence            478999999       6422111           11223468899999999874332222  1122222221111 1346


Q ss_pred             EEEEEcCCCCC
Q 036659          106 IVVFTGGDELE  116 (300)
Q Consensus       106 IVlFT~gD~Le  116 (300)
                      |||.|--|...
T Consensus       136 ilv~nK~Dl~~  146 (205)
T 1gwn_A          136 LLVGCKSDLRT  146 (205)
T ss_dssp             EEEEECGGGGG
T ss_pred             EEEEechhhcc
Confidence            77777777543

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=80.90  E-value=3.7  Score=38.85  Aligned_cols=73  Identities=21%  Similarity=0.255  Sum_probs=42.9

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCC-------CCHHHHHHHHHHH
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSWQ   94 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~r-------fT~EE~~al~~lq   94 (300)
                      ..++++.+++||||       |.-+.       ..+...    ...+.+++|||+.+...       +..+.+..+..+ 
T Consensus        79 ~~~~~~~~~iiDtp-------G~~~f-------~~~~~~----~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~-  139 (435)
T 1jny_A           79 FETKKYFFTIIDAP-------GHRDF-------VKNMIT----GASQADAAILVVSAKKGEYEAGMSVEGQTREHIILA-  139 (435)
T ss_dssp             EECSSCEEEECCCS-------SSTTH-------HHHHHH----TSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHH-
T ss_pred             EecCCeEEEEEECC-------CcHHH-------HHHHHh----hhhhcCEEEEEEECCCCccccccccchHHHHHHHHH-
Confidence            45678899999999       75442       223333    34688999999998742       111222222211 


Q ss_pred             HHhchhhhcceEEEEEcCCCCC
Q 036659           95 TLFGKNVFDYMIVVFTGGDELE  116 (300)
Q Consensus        95 ~lFG~~i~~y~IVlFT~gD~Le  116 (300)
                      ..+|   ..++||+.+--|...
T Consensus       140 ~~~~---~~~iivviNK~Dl~~  158 (435)
T 1jny_A          140 KTMG---LDQLIVAVNKMDLTE  158 (435)
T ss_dssp             HHTT---CTTCEEEEECGGGSS
T ss_pred             HHcC---CCeEEEEEEcccCCC
Confidence            2223   246778888777554

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=80.80  E-value=1.6  Score=44.35  Aligned_cols=51  Identities=24%  Similarity=0.266  Sum_probs=33.8

Q ss_pred             CCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHH
Q 036659           25 QVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSW   93 (300)
Q Consensus        25 ~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~l   93 (300)
                      ++..||+||||       |-.|++       -|+.+++.+|.    ..|||+.+-.-....-+..++..
T Consensus        83 ~~~~iNlIDTP-------GHvDF~-------~Ev~~aLr~~D----gavlvVDaveGV~~qT~~v~~~a  133 (709)
T 4fn5_A           83 DNYRVNVIDTP-------GHVDFT-------IEVERSLRVLD----GAVVVFCGTSGVEPQSETVWRQA  133 (709)
T ss_dssp             CCEEEEEECCC-------SCTTCH-------HHHHHHHHHCS----EEEEEEETTTCSCHHHHHHHHHH
T ss_pred             CCEEEEEEeCC-------CCcccH-------HHHHHHHHHhC----eEEEEEECCCCCchhHHHHHHHH
Confidence            46899999999       888874       57777887653    44555555446665555544443

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=80.78  E-value=20  Score=28.68  Aligned_cols=39  Identities=31%  Similarity=0.302  Sum_probs=23.2

Q ss_pred             eeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCC
Q 036659           23 RIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRS   80 (300)
Q Consensus        23 ~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~   80 (300)
                      .+++.  .+.++|||       |.-....    +    ...+    .+.|++++|+.+.+
T Consensus        63 ~~~~~~~~l~i~Dt~-------G~~~~~~----~----~~~~----~~~~~~ilv~d~~~  103 (187)
T 3c5c_A           63 TVDHQPVHLRVMDTA-------DLDTPRN----C----ERYL----NWAHAFLVVYSVDS  103 (187)
T ss_dssp             EETTEEEEEEEEECC-------C---CCC----T----HHHH----TTCSEEEEEEETTC
T ss_pred             EECCEEEEEEEEECC-------CCCcchh----H----HHHH----hhCCEEEEEEECCC
Confidence            34554  67789999       6433221    1    1122    36799999999974

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=80.34  E-value=4.7  Score=35.98  Aligned_cols=44  Identities=11%  Similarity=0.050  Sum_probs=28.6

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCC
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVR   79 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~   79 (300)
                      +..+.++|||       |..+.+..+.  ...+.+... ...+++++++|+.+.
T Consensus        48 ~~~l~l~Dtp-------G~~~~~~~~~--~e~v~~~~~-~~~~~d~vi~V~D~t   91 (272)
T 3b1v_A           48 NKDLEIQDLP-------GIYSMSPYSP--EAKVARDYL-LSQRADSILNVVDAT   91 (272)
T ss_dssp             CTTEEEEECC-------CCSCSSCSSH--HHHHHHHHH-HTTCCSEEEEEEEGG
T ss_pred             CCeEEEEECC-------CcCccCCCCh--HHHHHHHHH-hcCCCCEEEEEecCC
Confidence            6789999999       8776543321  122333222 235799999999986

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=80.19  E-value=0.4  Score=39.14  Aligned_cols=48  Identities=21%  Similarity=0.021  Sum_probs=27.2

Q ss_pred             CCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHHhchhhhcceEEEEEcCCCCC
Q 036659           66 KDGIHAVLVVFSVRSRFSQEEE--AALHSWQTLFGKNVFDYMIVVFTGGDELE  116 (300)
Q Consensus        66 ~pGpHA~LLV~~v~~rfT~EE~--~al~~lq~lFG~~i~~y~IVlFT~gD~Le  116 (300)
                      ..+.+++++|+.+..+-|-++.  ..+..+....+   -..+|||+|--|-..
T Consensus        99 ~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~  148 (204)
T 3th5_A           99 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRD  148 (204)
Confidence            4578999999998754433332  23333333222   234677777667543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	300
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	4e-11

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 59.8 bits (144), Expect = 4e-11
 Identities = 16/127 (12%), Positives = 39/127 (30%), Gaps = 4/127 (3%)

Query: 14  KTAPLPPTIRIQVVLEKVIDTRWVR-HAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAV 72
             +P        V++ +      +       L +    +      I +   +    I  +
Sbjct: 59  SISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSF--LLDKTIDVL 116

Query: 73  LVVFSV-RSRFSQEEEAALHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECP 131
           L V  +   R    ++    +    FGK +++  IV  T       +    +++  +   
Sbjct: 117 LYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSE 176

Query: 132 KPLKSSR 138
             L+  R
Sbjct: 177 ALLQVVR 183

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	300
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.84
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.76
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.99
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	96.5
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.21
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.2
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.17
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	95.6
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.36
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	94.73
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	94.55
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	93.58
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	93.08
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	92.57
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	92.34
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	92.31
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	91.51
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	89.83
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	89.47
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	87.67
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	87.66
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	86.31
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	86.09
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	83.25
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	82.29
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	82.16
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	81.26
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	81.04
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	80.98

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.84  E-value=6.1e-21  Score=169.23  Aligned_cols=169  Identities=15%  Similarity=0.194  Sum_probs=131.8

Q ss_pred             CCCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCC-CCCHHHH
Q 036659            9 RFGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRS-RFSQEEE   87 (300)
Q Consensus         9 ~~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~-rfT~EE~   87 (300)
                      ..+.|+.|.... ..++|+.++|||||       ||+|+....+.+..++..|.  ..+|+|++|+|++++. |||+++.
T Consensus        63 ~~~~T~~~~~~~-~~~~g~~i~viDTP-------Gl~~~~~~~~~~~~~i~~~~--~~~~~~~il~v~~~~~~r~~~~~~  132 (257)
T d1h65a_          63 FQSEGPRPVMVS-RSRAGFTLNIIDTP-------GLIEGGYINDMALNIIKSFL--LDKTIDVLLYVDRLDAYRVDNLDK  132 (257)
T ss_dssp             SSCCCSSCEEEE-EEETTEEEEEEECC-------CSEETTEECHHHHHHHHHHT--TTCEECEEEEEEESSCCCCCHHHH
T ss_pred             CCCcceeEEEEE-EEeccEEEEEEeee-------cccCCcchHHHHHHHHHHHH--hcCCCCeEEEEEECCCCCCCHHHH
Confidence            357888888874 67999999999999       99998877787777777765  4679999999999864 8999999


Q ss_pred             HHHHHHHHHhchhhhcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhh
Q 036659           88 AALHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQL  167 (300)
Q Consensus        88 ~al~~lq~lFG~~i~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~  167 (300)
                      .+++.++.+||+++++|+|||||++|.+.+++.++++|+.. .+..+++                           ++..
T Consensus       133 ~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~e~~~~~-~~~~l~~---------------------------~i~~  184 (257)
T d1h65a_         133 LVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQ---------------------------VVRS  184 (257)
T ss_dssp             HHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHH---------------------------HHHH
T ss_pred             HHHHHHHHHcchhhhhCEEEEEECcccCCcCCCcHHHHHHh-hhHHHHH---------------------------HHHH
Confidence            99999999999999999999999999998777899999977 3556666                           5555


Q ss_pred             cCCeE----------EEEeCCCc------chh---hchHHHHHHHHHHHHHHHHcCCCCCChHHHHH
Q 036659          168 CDNRC----------VLFDNKTK------DEA---KRTEQIWKLLSLVNSVAVQNDGQPYTDDIFVE  215 (300)
Q Consensus       168 C~~R~----------~~FnNk~~------de~---~~~~Qv~eLL~~Ve~mv~~NgG~~yt~e~f~e  215 (300)
                      |.+++          ++++|...      .++   ....++.+|+..+-.|+..++...+.++.+-+
T Consensus       185 ~~~~~~~~~~~~~~~~l~en~~~~~~n~~~ekvlp~~~~~~~~lv~~i~~~~~~~~~~i~~~~~~i~  251 (257)
T d1h65a_         185 GASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVDKNLID  251 (257)
T ss_dssp             HTTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTSSSCCEECCHHHHH
T ss_pred             HhhhhhhhccccCCEEEEecCCcccccccccccccCCcchHHHHHHHHHHHHHcCCCCccccHHHHh
Confidence            55443          34444321      000   12358999999999999877776565654433

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.76  E-value=0.00012  Score=58.27  Aligned_cols=92  Identities=16%  Similarity=0.117  Sum_probs=63.1

Q ss_pred             CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHH-HHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHH
Q 036659           11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFV-GKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAA   89 (300)
Q Consensus        11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v-~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~a   89 (300)
                      +.|..+... .....|..++++|||       |+.+........ ......++    ...+++|+|+.+...++..++..
T Consensus        38 ~tt~~~~~~-~~~~~~~~~~~~Dtp-------G~~~~~~~~~~~~~~~~~~~~----~~ad~il~v~D~~~~~~~~~~~i  105 (178)
T d1wf3a1          38 QTTRKRLRG-ILTEGRRQIVFVDTP-------GLHKPMDALGEFMDQEVYEAL----ADVNAVVWVVDLRHPPTPEDELV  105 (178)
T ss_dssp             CCCCSCEEE-EEEETTEEEEEEECC-------CCCCCCSHHHHHHHHHHHHHT----SSCSEEEEEEETTSCCCHHHHHH
T ss_pred             Ccccccccc-eeeeeeeeeeecccc-------cccccccccchhccccccccc----ccccceeeeechhhhhcccccch
Confidence            345555444 246789999999999       776654433332 23333333    46789999999988899988777


Q ss_pred             HHHHHHHhchhhhcceEEEEEcCCCCCC
Q 036659           90 LHSWQTLFGKNVFDYMIVVFTGGDELED  117 (300)
Q Consensus        90 l~~lq~lFG~~i~~y~IVlFT~gD~Le~  117 (300)
                      +..++...+.   ...|||++--|....
T Consensus       106 ~~~l~~~~~~---~piilv~NK~Dl~~~  130 (178)
T d1wf3a1         106 ARALKPLVGK---VPILLVGNKLDAAKY  130 (178)
T ss_dssp             HHHHGGGTTT---SCEEEEEECGGGCSS
T ss_pred             hhheeccccc---hhhhhhhcccccccC
Confidence            7777665543   468889998886543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.99  E-value=0.0038  Score=49.76  Aligned_cols=125  Identities=11%  Similarity=0.076  Sum_probs=77.6

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCCChH--HHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSAGSK--FVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD  103 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~~~e--~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~  103 (300)
                      .....++|+|       |+.-......  .....+..-...+..+.+++++|+.....++.++...+..++.. +    .
T Consensus        68 ~~~~~~~d~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~-~----~  135 (195)
T d1svia_          68 NDELHFVDVP-------GYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY-G----I  135 (195)
T ss_dssp             TTTEEEEECC-------CBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-T----C
T ss_pred             cccceEEEEE-------eeccccccccccchhhhHHhhhhccccchhhhhhhhhccccccccccccccccccc-c----C
Confidence            4456789999       4433322222  22222222222234577889999988878999999888887652 2    3


Q ss_pred             ceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccccccccchhhhhhcCCeEEEEeCCCcchh
Q 036659          104 YMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLLPWGIGRRGILQLCDNRCVLFDNKTKDEA  183 (300)
Q Consensus       104 y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~C~~R~~~FnNk~~de~  183 (300)
                      .+|||+|.-|.+..  ..+++++..     +++                          .+-...+..++.+..++.   
T Consensus       136 piivv~NK~D~~~~--~~~~~~~~~-----~~~--------------------------~l~~~~~~~~~~~SA~~~---  179 (195)
T d1svia_         136 PVIVIATKADKIPK--GKWDKHAKV-----VRQ--------------------------TLNIDPEDELILFSSETK---  179 (195)
T ss_dssp             CEEEEEECGGGSCG--GGHHHHHHH-----HHH--------------------------HHTCCTTSEEEECCTTTC---
T ss_pred             cceechhhccccCH--HHHHHHHHH-----HHH--------------------------HhcccCCCCEEEEeCCCC---
Confidence            58999999998755  356666543     222                          011224556666766542   


Q ss_pred             hchHHHHHHHHHHHHHHH
Q 036659          184 KRTEQIWKLLSLVNSVAV  201 (300)
Q Consensus       184 ~~~~Qv~eLL~~Ve~mv~  201 (300)
                         ..+.+|++.|.+++.
T Consensus       180 ---~gi~el~~~i~~~l~  194 (195)
T d1svia_         180 ---KGKDEAWGAIKKMIN  194 (195)
T ss_dssp             ---TTHHHHHHHHHHHHT
T ss_pred             ---CCHHHHHHHHHHHhC
Confidence               368889998888763

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.50  E-value=0.00055  Score=63.00  Aligned_cols=72  Identities=8%  Similarity=-0.018  Sum_probs=49.1

Q ss_pred             eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659           24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD  103 (300)
Q Consensus        24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~  103 (300)
                      .++..++++|||       |+.......+....++.    +  .-.++||+|.+ . +||+.|...+..++.. |    +
T Consensus       104 ~~~~~~~l~DtP-------G~~~~~~~~~~~~~~~~----~--~~~d~~l~~~~-~-~~~~~d~~l~~~l~~~-~----k  163 (400)
T d1tq4a_         104 PNIPNVVFWDLP-------GIGSTNFPPDTYLEKMK----F--YEYDFFIIISA-T-RFKKNDIDIAKAISMM-K----K  163 (400)
T ss_dssp             SSCTTEEEEECC-------CGGGSSCCHHHHHHHTT----G--GGCSEEEEEES-S-CCCHHHHHHHHHHHHT-T----C
T ss_pred             cCCCeEEEEeCC-------CcccccccHHHHHHHhh----h--hcceEEEEecC-C-CCCHHHHHHHHHHHHc-C----C
Confidence            356679999999       88877766665544431    1  11345555544 4 9999999998888663 4    5


Q ss_pred             ceEEEEEcCCCC
Q 036659          104 YMIVVFTGGDEL  115 (300)
Q Consensus       104 y~IVlFT~gD~L  115 (300)
                      ..++|+|.-|..
T Consensus       164 ~~~~V~nK~D~~  175 (400)
T d1tq4a_         164 EFYFVRTKVDSD  175 (400)
T ss_dssp             EEEEEECCHHHH
T ss_pred             CEEEEEeCcccc
Confidence            789999976643

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.21  E-value=0.013  Score=45.90  Aligned_cols=82  Identities=15%  Similarity=0.097  Sum_probs=46.4

Q ss_pred             eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh-h
Q 036659           24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV-F  102 (300)
Q Consensus        24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i-~  102 (300)
                      ..+..+.++|||       |+++.............+.+    ...+++++|+... ....+.......+...+.... -
T Consensus        46 ~~~~~~~~~Dtp-------G~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~  113 (180)
T d1udxa2          46 SEEERFTLADIP-------GIIEGASEGKGLGLEFLRHI----ARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLR  113 (180)
T ss_dssp             SSSCEEEEEECC-------CCCCCGGGSCCSCHHHHHHH----TSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHH
T ss_pred             cCCCeEEEcCCC-------eeecCchHHHHHHHHHHHHH----Hhhhhhhhhcccc-cccccchhhhhhhhhccccccch
Confidence            357789999999       76543221111112222222    3456778888765 333444444444444444433 3


Q ss_pred             cceEEEEEcCCCCCC
Q 036659          103 DYMIVVFTGGDELED  117 (300)
Q Consensus       103 ~y~IVlFT~gD~Le~  117 (300)
                      +.+|||++--|.+..
T Consensus       114 ~p~iiv~NK~D~~~~  128 (180)
T d1udxa2         114 RPSLVALNKVDLLEE  128 (180)
T ss_dssp             SCEEEEEECCTTSCH
T ss_pred             hhhhhhhhhhhhhhH
Confidence            578999998887764

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.20  E-value=0.078  Score=41.10  Aligned_cols=100  Identities=13%  Similarity=0.092  Sum_probs=54.9

Q ss_pred             CCccccCCCceeeCCEEEEEEeCCCCcccC--cccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHH
Q 036659           12 APKTAPLPPTIRIQVVLEKVIDTRWVRHAI--ARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAA   89 (300)
Q Consensus        12 vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~--~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~a   89 (300)
                      .|..|... ...++|..+.++||||.....  ............+    .+++.    .++++++|+.+...++++....
T Consensus        42 t~~~~~~~-~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~----~~~~~----~~dvii~v~d~~~~~~~~~~~~  112 (186)
T d1mkya2          42 TTRDPVDD-EVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV----VDSIE----KADVVVIVLDATQGITRQDQRM  112 (186)
T ss_dssp             -----CCE-EEEETTEEEEESSCSCC-----------CCSCCHHH----HHHHH----HCSEEEEEEETTTCCCHHHHHH
T ss_pred             ccccccee-eeccCCceeeeeccCCccccccccccccccchhHHH----HHHHh----cCCEEEEeecccccchhhHHHH
Confidence            34444443 357899999999999542211  0011111112222    33332    4679999999987788877776


Q ss_pred             HHHHHHHhchhhhcceEEEEEcCCCCCCCcccHHHh
Q 036659           90 LHSWQTLFGKNVFDYMIVVFTGGDELEDNDETLEDY  125 (300)
Q Consensus        90 l~~lq~lFG~~i~~y~IVlFT~gD~Le~~~~tledy  125 (300)
                      +..+...     -...|+|++-.|.+......++++
T Consensus       113 ~~~~~~~-----~~~~i~v~nK~D~~~~~~~~~~~~  143 (186)
T d1mkya2         113 AGLMERR-----GRASVVVFNKWDLVVHREKRYDEF  143 (186)
T ss_dssp             HHHHHHT-----TCEEEEEEECGGGSTTGGGCHHHH
T ss_pred             HHHHHHc-----CCceeeeccchhhhcchhhhhhhH
Confidence            6665432     245688888888775543344444

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.17  E-value=0.015  Score=45.11  Aligned_cols=83  Identities=16%  Similarity=0.054  Sum_probs=53.0

Q ss_pred             eCCEEEEEEeCCCCcccCcccCCCCCCh----HHHHHHHHHhhccCCCCCeEEEEEEeCC-----------CCCCHHHHH
Q 036659           24 IQVVLEKVIDTRWVRHAIARLFDFSAGS----KFVGKEIVTCIGMAKDGIHAVLVVFSVR-----------SRFSQEEEA   88 (300)
Q Consensus        24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~----e~v~kEI~~ci~l~~pGpHA~LLV~~v~-----------~rfT~EE~~   88 (300)
                      +.+..+.+||||       |+......+    +.+..++...+.-+.++.+++++|+...           ..++..+..
T Consensus        40 ~~~~~~~ivDtp-------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~  112 (184)
T d2cxxa1          40 IEWKNHKIIDMP-------GFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVE  112 (184)
T ss_dssp             EEETTEEEEECC-------CBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHH
T ss_pred             cccccceecccC-------CceeccccccccccccchhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHH
Confidence            444456789999       765444433    3445566666666677889999998653           134445555


Q ss_pred             HHHHHHHHhchhhhcceEEEEEcCCCCCCC
Q 036659           89 ALHSWQTLFGKNVFDYMIVVFTGGDELEDN  118 (300)
Q Consensus        89 al~~lq~lFG~~i~~y~IVlFT~gD~Le~~  118 (300)
                      .+..+..     .-..+|||+|--|.+++.
T Consensus       113 ~~~~l~~-----~~~p~iiv~NK~D~~~~~  137 (184)
T d2cxxa1         113 FYQFLRE-----LDIPTIVAVNKLDKIKNV  137 (184)
T ss_dssp             HHHHHHH-----TTCCEEEEEECGGGCSCH
T ss_pred             HHHHHHH-----cCCCEEEEEeeeehhhhH
Confidence            5544433     134589999999988653

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.60  E-value=0.2  Score=43.84  Aligned_cols=115  Identities=15%  Similarity=0.220  Sum_probs=66.3

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ..|+|..+++||||       |..|+..       |+..++..+    .+.|||+....-....-+.+.+.... +    
T Consensus        66 ~~~~~~~~n~iDtP-------G~~dF~~-------e~~~~l~~~----D~avlVvda~~Gv~~~T~~~w~~a~~-~----  122 (276)
T d2bv3a2          66 CFWKDHRINIIDAP-------GHVDFTI-------EVERSMRVL----DGAIVVFDSSQGVEPQSETVWRQAEK-Y----  122 (276)
T ss_dssp             EEETTEEEEEECCC-------SSSSCST-------THHHHHHHC----CEEEEEEETTTSSCHHHHHHHHHHHT-T----
T ss_pred             eccCCeEEEEecCC-------chhhhHH-------HHHHHHHhh----hheEEeccccCCcchhHHHHHHHHHH-c----
Confidence            57999999999999       9999864       345555433    34566666554666666665555432 1    


Q ss_pred             hcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhccc---ccccccccc--hhhhhhcCCeEEEEe
Q 036659          102 FDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLND---FLLPWGIGR--RGILQLCDNRCVLFD  176 (300)
Q Consensus       102 ~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~Ll~~C~~R~~~Fn  176 (300)
                       .--+++|-++=+-++.  .+++-|..     +++           .|+..   .-+|||-|.  +|++..-..+-+.|.
T Consensus       123 -~lP~i~fINKmDr~~a--d~~~~l~e-----i~~-----------~l~~~~vp~~~Pig~~~~f~GvvDl~~~~a~~~~  183 (276)
T d2bv3a2         123 -KVPRIAFANKMDKTGA--DLWLVIRT-----MQE-----------RLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYG  183 (276)
T ss_dssp             -TCCEEEEEECTTSTTC--CHHHHHHH-----HHH-----------TTCCCEEECEEEESCGGGCCEEEETTTTEEEEES
T ss_pred             -CCCEEEEEeccccccc--ccchhHHH-----HHH-----------HhCCCeEEEEecccCCCceeEEeeccceEEEEec
Confidence             2234555554333332  33333322     111           11111   124565433  788888899999997


Q ss_pred             CC
Q 036659          177 NK  178 (300)
Q Consensus       177 Nk  178 (300)
                      +.
T Consensus       184 ~~  185 (276)
T d2bv3a2         184 ND  185 (276)
T ss_dssp             SS
T ss_pred             CC
Confidence            64

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.36  E-value=0.03  Score=46.26  Aligned_cols=73  Identities=14%  Similarity=0.180  Sum_probs=51.6

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ..++++.+++||||       |-+|+       .+++.+.+..    .++.|||+.+..-...+.+..+.....+ |   
T Consensus        62 ~~~~~~~i~iiDtP-------Gh~df-------~~~~~~~~~~----aD~avlVvda~~Gv~~qt~~~~~~~~~~-g---  119 (204)
T d2c78a3          62 YETAKRHYSHVDCP-------GHADY-------IKNMITGAAQ----MDGAILVVSAADGPMPQTREHILLARQV-G---  119 (204)
T ss_dssp             EECSSCEEEEEECC-------CSGGG-------HHHHHHHHTT----CSSEEEEEETTTCCCHHHHHHHHHHHHT-T---
T ss_pred             EEeCCeEEEEEeCC-------Cchhh-------HHHHHHHHHH----CCEEEEEEECCCCCcHHHHHHHHHHHHc-C---
Confidence            46899999999999       86664       2566666654    4578888888767888776666665443 3   


Q ss_pred             hcceEEEEEcCCCCC
Q 036659          102 FDYMIVVFTGGDELE  116 (300)
Q Consensus       102 ~~y~IVlFT~gD~Le  116 (300)
                      ..++||+.+-=|.+.
T Consensus       120 i~~iiv~iNK~D~~~  134 (204)
T d2c78a3         120 VPYIVVFMNKVDMVD  134 (204)
T ss_dssp             CCCEEEEEECGGGCC
T ss_pred             CCeEEEEEEecccCC
Confidence            456666677667654

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.73  E-value=0.2  Score=42.11  Aligned_cols=88  Identities=15%  Similarity=0.127  Sum_probs=51.0

Q ss_pred             EEEEEEeCCCCcccCcccCCCCCCh--HHHHHHHH-HhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659           27 VLEKVIDTRWVRHAIARLFDFSAGS--KFVGKEIV-TCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD  103 (300)
Q Consensus        27 r~v~VIDTP~w~~~~~glfd~~~~~--e~v~kEI~-~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~  103 (300)
                      ..+++||||       |+.......  ......+. -+..+..+--|++|+|.+....++..+.  +..++. +.+ ...
T Consensus       125 ~~l~liD~P-------G~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~--~~~~~~-~~~-~~~  193 (299)
T d2akab1         125 LNLTLVDLP-------GMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA--LKIAKE-VDP-QGQ  193 (299)
T ss_dssp             CSEEEEECC-------CBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH--HHHHHH-HCT-TCS
T ss_pred             CCeeEEccC-------CccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHH--HHHHHH-hCc-CCC
Confidence            358999999       877543321  11111111 1222223445788999998878887753  333333 322 346


Q ss_pred             ceEEEEEcCCCCCCCcccHHHhh
Q 036659          104 YMIVVFTGGDELEDNDETLEDYL  126 (300)
Q Consensus       104 y~IVlFT~gD~Le~~~~tledyl  126 (300)
                      .+++|+|.-|.+.+. ....+++
T Consensus       194 r~i~Vltk~D~~~~~-~~~~~~~  215 (299)
T d2akab1         194 RTIGVITKLDLMDEG-TDARDVL  215 (299)
T ss_dssp             SEEEEEECGGGSCTT-CCCHHHH
T ss_pred             ceeeEEeccccccch-hhHHHHH
Confidence            899999999988753 2334444

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=94.55  E-value=0.13  Score=44.80  Aligned_cols=116  Identities=22%  Similarity=0.201  Sum_probs=68.2

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ..|+|+++++||||       |-.|+.       .|...++..+    .+.|||+....-....-+..++...+. |   
T Consensus        62 ~~~~~~~~n~iDtP-------Gh~dF~-------~e~~~al~~~----D~avlvvda~~Gv~~~t~~~~~~~~~~-~---  119 (267)
T d2dy1a2          62 LLFRGHRVFLLDAP-------GYGDFV-------GEIRGALEAA----DAALVAVSAEAGVQVGTERAWTVAERL-G---  119 (267)
T ss_dssp             EEETTEEEEEEECC-------CSGGGH-------HHHHHHHHHC----SEEEEEEETTTCSCHHHHHHHHHHHHT-T---
T ss_pred             ccccccceeEEccC-------chhhhh-------hhhhhhhccc----CceEEEeeccCCccchhHHHHHhhhhc-c---
Confidence            57899999999999       877752       5666666654    377777777667777777777665432 1   


Q ss_pred             hcceEEEEEcCCCCCCCcccHHHhhhhCCCccccccccCCCchhhhhhcccccc--cccc--cchhhhhhcCCeEEEEeC
Q 036659          102 FDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKSSRLKVPYSILLHFLNDFLL--PWGI--GRRGILQLCDNRCVLFDN  177 (300)
Q Consensus       102 ~~y~IVlFT~gD~Le~~~~tledyl~~~~~~~Lk~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~Ll~~C~~R~~~FnN  177 (300)
                      . -.+|+++.-|...+    ..+-+..     +++           +|++-..+  |++-  +-.+++..-.++.+.|++
T Consensus       120 ~-p~~i~iNk~D~~~~----~~~~l~~-----~~~-----------~lg~~vp~~~Pi~~~~~f~GvvDl~~~~a~~~~~  178 (267)
T d2dy1a2         120 L-PRMVVVTKLDKGGD----YYALLED-----LRS-----------TLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYEN  178 (267)
T ss_dssp             C-CEEEEEECGGGCCC----HHHHHHH-----HHH-----------HHCSEEECEEEEEETTEEEEEEETTTTEEEEEET
T ss_pred             c-cccccccccccccc----chhhhhh-----HHH-----------HhccCcCeEeeeccCCceeEEeecCcceEEEecC
Confidence            1 23444454465322    1111111     122           22221222  3332  236788888888888987


Q ss_pred             CCc
Q 036659          178 KTK  180 (300)
Q Consensus       178 k~~  180 (300)
                      ...
T Consensus       179 ~~~  181 (267)
T d2dy1a2         179 GEE  181 (267)
T ss_dssp             TEE
T ss_pred             CCC
Confidence            643

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.58  E-value=0.85  Score=33.87  Aligned_cols=84  Identities=23%  Similarity=0.249  Sum_probs=51.6

Q ss_pred             CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCC------ChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCH
Q 036659           11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSA------GSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQ   84 (300)
Q Consensus        11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~------~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~   84 (300)
                      +.|...... .....|..+.++|||       |+.+...      ..+.....+.        +.+++++|+......+.
T Consensus        33 ~~~~~~~~~-~~~~~~~~~~~~Dt~-------G~~~~~~~~~~~~~~~~~~~~~~--------~ad~ii~v~d~~~~~~~   96 (160)
T d1xzpa2          33 GTTRDVISE-EIVIRGILFRIVDTA-------GVRSETNDLVERLGIERTLQEIE--------KADIVLFVLDASSPLDE   96 (160)
T ss_dssp             CCSSCSCCE-EEEETTEEEEEEESS-------CCCSSCCTTCCCCCHHHHHHHHH--------HCSEEEEEEETTSCCCH
T ss_pred             cccccceeE-EEEeCCeeEEecccc-------ccccCCccHHHHHHHHHHHHHHH--------hCCEEEEEEeCCCCcch
Confidence            344444333 356789999999999       5543221      1122222322        45799999999878887


Q ss_pred             HHHHHHHHHHHHhchhhhcceEEEEEcCCCCCC
Q 036659           85 EEEAALHSWQTLFGKNVFDYMIVVFTGGDELED  117 (300)
Q Consensus        85 EE~~al~~lq~lFG~~i~~y~IVlFT~gD~Le~  117 (300)
                      ++......+       ...+.+++.+--|....
T Consensus        97 ~~~~~~~~~-------~~~~~i~~~~k~d~~~~  122 (160)
T d1xzpa2          97 EDRKILERI-------KNKRYLVVINKVDVVEK  122 (160)
T ss_dssp             HHHHHHHHH-------TTSSEEEEEEECSSCCC
T ss_pred             hhhhhhhhc-------ccccceeeeeeccccch
Confidence            776554433       23467777777776654

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=93.08  E-value=0.14  Score=42.10  Aligned_cols=72  Identities=13%  Similarity=0.110  Sum_probs=47.4

Q ss_pred             eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh
Q 036659           23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF  102 (300)
Q Consensus        23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~  102 (300)
                      .+.++.+++||||       |-.|       ..+++.+.+..+    ++.|||+.+..-..++.+..+..+..+ |   .
T Consensus        62 ~~~~~~~~~iDtP-------Gh~~-------f~~~~~~~~~~a----D~allVVda~~G~~~QT~~~~~~a~~~-~---~  119 (196)
T d1d2ea3          62 STAARHYAHTDCP-------GHAD-------YVKNMITGTAPL----DGCILVVAANDGPMPQTREHLLLARQI-G---V  119 (196)
T ss_dssp             ECSSCEEEEEECS-------SHHH-------HHHHHHHTSSCC----SEEEEEEETTTCSCHHHHHHHHHHHHT-T---C
T ss_pred             EeceeeEEeecCc-------chHH-------HHHHHHHHHhhc----CeEEEEEEcCCCCchhHHHHHHHHHHh-c---C
Confidence            5679999999999       6332       346677766544    799999999877777666555555433 2   2


Q ss_pred             cceEEEEEcCCCCC
Q 036659          103 DYMIVVFTGGDELE  116 (300)
Q Consensus       103 ~y~IVlFT~gD~Le  116 (300)
                      +++||+..--|...
T Consensus       120 ~~iIv~iNK~D~~~  133 (196)
T d1d2ea3         120 EHVVVYVNKADAVQ  133 (196)
T ss_dssp             CCEEEEEECGGGCS
T ss_pred             CcEEEEEecccccc
Confidence            45555555555443

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=92.57  E-value=0.39  Score=40.11  Aligned_cols=73  Identities=11%  Similarity=0.071  Sum_probs=48.9

Q ss_pred             eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh
Q 036659           23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF  102 (300)
Q Consensus        23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~  102 (300)
                      .++++.+++||||       |=.|+       ..++.+++.    ..++.+||+.+..-+.++....+. +...+|   .
T Consensus        85 ~~~~~~~~iiD~P-------GH~df-------v~~~~~g~~----~aD~ailVvda~~G~~~Qt~e~~~-~~~~~g---v  142 (222)
T d1zunb3          85 STAKRKFIIADTP-------GHEQY-------TRNMATGAS----TCDLAIILVDARYGVQTQTRRHSY-IASLLG---I  142 (222)
T ss_dssp             ECSSEEEEEEECC-------CSGGG-------HHHHHHHHT----TCSEEEEEEETTTCSCHHHHHHHH-HHHHTT---C
T ss_pred             eccceEEEEEecc-------chhhh-------hhhhccccc----cCceEEEEeccccCcccchHHHHH-HHHHcC---C
Confidence            4578999999999       75553       466666665    445667777776677776655544 334455   5


Q ss_pred             cceEEEEEcCCCCCC
Q 036659          103 DYMIVVFTGGDELED  117 (300)
Q Consensus       103 ~y~IVlFT~gD~Le~  117 (300)
                      ++.||+.+--|..+.
T Consensus       143 ~~iiv~vNK~D~~~~  157 (222)
T d1zunb3         143 KHIVVAINKMDLNGF  157 (222)
T ss_dssp             CEEEEEEECTTTTTS
T ss_pred             CEEEEEEEccccccc
Confidence            677777777775543

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=92.34  E-value=0.31  Score=41.24  Aligned_cols=87  Identities=15%  Similarity=0.141  Sum_probs=49.0

Q ss_pred             CEEEEEEeCCCCcccCcccCCCCCC------hHHHHHHHHHhhccCCCCC-eEEEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 036659           26 VVLEKVIDTRWVRHAIARLFDFSAG------SKFVGKEIVTCIGMAKDGI-HAVLVVFSVRSRFSQEEEAALHSWQTLFG   98 (300)
Q Consensus        26 Gr~v~VIDTP~w~~~~~glfd~~~~------~e~v~kEI~~ci~l~~pGp-HA~LLV~~v~~rfT~EE~~al~~lq~lFG   98 (300)
                      -..+++||||       |+..+...      ...+..-+..-+.    .+ |++|+|.+....++.++  ++..++.+-+
T Consensus       130 ~~~l~iiDtP-------G~~~~~~~~~~~~~~~~~~~~~~~yi~----~~~~~il~v~~~~~~~~~~~--~~~~~~~~~~  196 (306)
T d1jwyb_         130 VVNLTLVDLP-------GITKVPVGDQPTDIEQQIRRMVMAYIK----KQNAIIVAVTPANTDLANSD--ALQLAKEVDP  196 (306)
T ss_dssp             SCSEEEEECC-------CCC---------CSHHHHHHHHHHHHH----STTEEEEEEEESSSCSTTCS--HHHHHHHHCS
T ss_pred             CCCceEecCC-------CccccccCCcchhHHHHHHHHHHHHHh----CCCceeEEeecccccccccH--HHHHHHHhCc
Confidence            3468999999       87754321      2222222322332    34 45677777765566554  3344444433


Q ss_pred             hhhhcceEEEEEcCCCCCCCcccHHHhhhh
Q 036659           99 KNVFDYMIVVFTGGDELEDNDETLEDYLGR  128 (300)
Q Consensus        99 ~~i~~y~IVlFT~gD~Le~~~~tledyl~~  128 (300)
                        ....+++|+|.-|.+... ....+++..
T Consensus       197 --~~~r~i~Vitk~D~~~~~-~~~~~~l~~  223 (306)
T d1jwyb_         197 --EGKRTIGVITKLDLMDKG-TDAMEVLTG  223 (306)
T ss_dssp             --SCSSEEEEEECTTSSCSS-CCCHHHHTT
T ss_pred             --CCCeEEEEEeccccccch-hHHHHHHhC
Confidence              346899999999988653 455666654

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.31  E-value=0.27  Score=40.34  Aligned_cols=71  Identities=14%  Similarity=0.118  Sum_probs=50.3

Q ss_pred             eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh
Q 036659           23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF  102 (300)
Q Consensus        23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~  102 (300)
                      ..++..+++||||       |--++...           ...+..+.+++|||+.+...++.+.+..+..+.. +|    
T Consensus        66 ~~~~~~~~~iDtP-------Gh~~f~~~-----------~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~-~~----  122 (227)
T d1g7sa4          66 RETLPGLFFIDTP-------GHEAFTTL-----------RKRGGALADLAILIVDINEGFKPQTQEALNILRM-YR----  122 (227)
T ss_dssp             GGTCCEEEEECCC-------TTSCCTTS-----------BCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHH-TT----
T ss_pred             ccccccccccccc-------ceeccccc-----------chhcccccceEEEEEecccCcccchhHHHHHhhc-CC----
Confidence            4678899999999       65443221           2234567899999999987899999888887764 22    


Q ss_pred             cceEEEEEcCCCCC
Q 036659          103 DYMIVVFTGGDELE  116 (300)
Q Consensus       103 ~y~IVlFT~gD~Le  116 (300)
                      .-+||+++--|.+.
T Consensus       123 ~p~iivlNK~D~~~  136 (227)
T d1g7sa4         123 TPFVVAANKIDRIH  136 (227)
T ss_dssp             CCEEEEEECGGGST
T ss_pred             CeEEEEEECccCCC
Confidence            24677777666554

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=91.51  E-value=0.53  Score=37.28  Aligned_cols=71  Identities=14%  Similarity=0.201  Sum_probs=39.5

Q ss_pred             eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCC-CHHHHHHHHHHHHHhchhhh
Q 036659           24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSWQTLFGKNVF  102 (300)
Q Consensus        24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rf-T~EE~~al~~lq~lFG~~i~  102 (300)
                      .++..+++||||       |       ..+..++..+++..    ..++++|+.+...+ .+..+..+..+ ...|.   
T Consensus        75 ~~~~~~~~iDtP-------G-------h~~f~~~~~~~~~~----~d~~ilvvda~~g~~~~~t~e~~~~~-~~~~~---  132 (195)
T d1kk1a3          75 EFVRRVSFIDAP-------G-------HEALMTTMLAGASL----MDGAILVIAANEPCPRPQTREHLMAL-QIIGQ---  132 (195)
T ss_dssp             EEEEEEEEEECS-------S-------HHHHHHHHHHCGGG----CSEEEEEEETTSCSSCHHHHHHHHHH-HHHTC---
T ss_pred             cCceeEeeeccc-------h-------hhhhhHHhhccccc----ccccccccchhhhhhhhhhHHHHHHH-HHhcC---
Confidence            456789999999       6       24445666666654    45677777776443 33333333332 33343   


Q ss_pred             cceEEEEEcCCCCCC
Q 036659          103 DYMIVVFTGGDELED  117 (300)
Q Consensus       103 ~y~IVlFT~gD~Le~  117 (300)
                      ...|| +..+.++.+
T Consensus       133 ~~iiv-~inK~D~~d  146 (195)
T d1kk1a3         133 KNIII-AQNKIELVD  146 (195)
T ss_dssp             CCEEE-EEECGGGSC
T ss_pred             cccee-eeecccchh
Confidence            23444 444554544

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=89.83  E-value=0.062  Score=41.90  Aligned_cols=80  Identities=10%  Similarity=-0.078  Sum_probs=41.5

Q ss_pred             eCCEEEEEEeCCCCcccCcccCCCCCChH----HHHHHHHHhhccCCCCCeEEEEEEeCCCCCC-HHHHHHHHHHHHHhc
Q 036659           24 IQVVLEKVIDTRWVRHAIARLFDFSAGSK----FVGKEIVTCIGMAKDGIHAVLVVFSVRSRFS-QEEEAALHSWQTLFG   98 (300)
Q Consensus        24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e----~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT-~EE~~al~~lq~lFG   98 (300)
                      .+|+.+.++|||       |+.+......    ...+++.+|..+      ++++......... .+...........+.
T Consensus        46 ~~~~~~~~~Dtp-------G~~~~~~~~~~~~~~~l~~~~~~~~i------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  112 (185)
T d1lnza2          46 DDGRSFVMADLP-------GLIEGAHQGVGLGHQFLRHIERTRVI------VHVIDMSGLEGRDPYDDYLTINQELSEYN  112 (185)
T ss_dssp             SSSCEEEEEEHH-------HHHHHTTCTTTTHHHHHHHHHHCCEE------EEEEESSCSSCCCHHHHHHHHHHHHHHSC
T ss_pred             cCCcEEEEecCC-------CcccCchHHHHHHHHHHHHHHHhhhh------hheeeecccccchhhhhhhhhhhccchhh
Confidence            478899999999       7643222222    233344443321      1222222111333 333444555666666


Q ss_pred             hhhh-cceEEEEEcCCCCC
Q 036659           99 KNVF-DYMIVVFTGGDELE  116 (300)
Q Consensus        99 ~~i~-~y~IVlFT~gD~Le  116 (300)
                      .... +.+|||++--|..+
T Consensus       113 ~~~~~kp~ivv~NK~Dl~~  131 (185)
T d1lnza2         113 LRLTERPQIIVANKMDMPE  131 (185)
T ss_dssp             SSTTTSCBCBEEECTTSTT
T ss_pred             hhccCCcchhhccccchHh
Confidence            6544 35788888877554

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=89.47  E-value=0.41  Score=35.77  Aligned_cols=80  Identities=18%  Similarity=0.125  Sum_probs=52.8

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ....|..+.++|||       |+.+.....+...  +.++. .+..+.+++++|+....+.+.++...+..+......+ 
T Consensus        44 ~~~~~~~~~~~d~~-------g~~~~~~~~~~~~--~~~~~-~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-  112 (161)
T d2gj8a1          44 IHIDGMPLHIIDTA-------GLREASDEVERIG--IERAW-QEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAK-  112 (161)
T ss_dssp             EEETTEEEEEEECC-------CCSCCSSHHHHHH--HHHHH-HHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTT-
T ss_pred             eeccCceeeecccc-------ccccccccchhHH--HHHHH-HHHHhccccceeeccccccchhhhhhhhhhhhhcccc-
Confidence            46789999999999       9888654433222  22222 2234677888999888777777777666665555443 


Q ss_pred             hcceEEEEEcCC
Q 036659          102 FDYMIVVFTGGD  113 (300)
Q Consensus       102 ~~y~IVlFT~gD  113 (300)
                       ...|||.+--|
T Consensus       113 -~~iilv~NK~D  123 (161)
T d2gj8a1         113 -LPITVVRNKAD  123 (161)
T ss_dssp             -CCEEEEEECHH
T ss_pred             -cceeeccchhh
Confidence             45677777555

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=87.67  E-value=4.8  Score=30.91  Aligned_cols=73  Identities=15%  Similarity=0.169  Sum_probs=49.2

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ..+++..++++|||       |..       ...+++..++.    +.+++++|+........+.+..+..+.. .|-  
T Consensus        54 ~~~~~~~~~~~d~~-------g~~-------~~~~~~~~~l~----~~d~~ilv~d~~~g~~~~~~~~~~~~~~-~~~--  112 (179)
T d1wb1a4          54 FKLENYRITLVDAP-------GHA-------DLIRAVVSAAD----IIDLALIVVDAKEGPKTQTGEHMLILDH-FNI--  112 (179)
T ss_dssp             EEETTEEEEECCCS-------SHH-------HHHHHHHHHTT----SCCEEEEEEETTTCSCHHHHHHHHHHHH-TTC--
T ss_pred             cccCCccccccccc-------ccc-------ccccchhhhhh----hccccccccccccccchhhhhhhhhhhh-cCC--
Confidence            46788899999999       532       33455555543    6789999998886777766665554433 332  


Q ss_pred             hcceEEEEEcCCCCCC
Q 036659          102 FDYMIVVFTGGDELED  117 (300)
Q Consensus       102 ~~y~IVlFT~gD~Le~  117 (300)
                        -.|||++--|....
T Consensus       113 --p~iiv~NKiD~~~~  126 (179)
T d1wb1a4         113 --PIIVVITKSDNAGT  126 (179)
T ss_dssp             --CBCEEEECTTSSCH
T ss_pred             --cceeccccccccCH
Confidence              37788887786643

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=87.66  E-value=1  Score=35.92  Aligned_cols=71  Identities=13%  Similarity=0.171  Sum_probs=42.1

Q ss_pred             eCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhhc
Q 036659           24 IQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVFD  103 (300)
Q Consensus        24 ~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~~  103 (300)
                      ..++.+++||||       |       ..+..+++.+++..    .+.+|||+....-+.+......-.+...+|-   .
T Consensus        83 ~~~r~~~iiD~P-------G-------H~df~~~~~~~~~~----ad~ailvVda~~gi~~~~t~e~~~~~~~~~i---~  141 (205)
T d2qn6a3          83 KFLRRISFIDAP-------G-------HEVLMATMLSGAAL----MDGAILVVAANEPFPQPQTREHFVALGIIGV---K  141 (205)
T ss_dssp             EEEEEEEEEECS-------C-------HHHHHHHHHHTSSC----CSEEEEEEETTSCSSCHHHHHHHHHHHHTTC---C
T ss_pred             cceEEEEEeccc-------h-------HHHHHhhhhcceec----cccccccccccccccchhHHHHHHHHHHcCC---c
Confidence            346899999999       5       23445667776653    5788888888766744333322233334453   3


Q ss_pred             ceEEEEEcCCCC
Q 036659          104 YMIVVFTGGDEL  115 (300)
Q Consensus       104 y~IVlFT~gD~L  115 (300)
                      .+||+.+--|..
T Consensus       142 ~iIV~vNK~Dl~  153 (205)
T d2qn6a3         142 NLIIVQNKVDVV  153 (205)
T ss_dssp             CEEEEEECGGGS
T ss_pred             eeeeccccCCCc
Confidence            455555544533

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.31  E-value=2.6  Score=31.88  Aligned_cols=18  Identities=6%  Similarity=0.266  Sum_probs=14.2

Q ss_pred             ccCCCCCeEEEEEEeCCC
Q 036659           63 GMAKDGIHAVLVVFSVRS   80 (300)
Q Consensus        63 ~l~~pGpHA~LLV~~v~~   80 (300)
                      .+.-.+.+++|+|+.+..
T Consensus        72 ~~~~~~ad~~ilv~d~~~   89 (169)
T d3raba_          72 TAYYRGAMGFILMYDITN   89 (169)
T ss_dssp             HTTTTTCCEEEEEEETTC
T ss_pred             HHHHhcCCEEEEEEECcc
Confidence            335678999999999873

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.09  E-value=3.5  Score=31.25  Aligned_cols=46  Identities=15%  Similarity=0.140  Sum_probs=25.8

Q ss_pred             eeeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHH
Q 036659           22 IRIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQE   85 (300)
Q Consensus        22 ~~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~E   85 (300)
                      ..++|.  .+.+.|||       |.-.           .......+-.+++|+++|+.+..+-|-+
T Consensus        48 ~~~~~~~~~l~i~D~~-------G~e~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~   95 (173)
T d2fu5c1          48 IELDGKRIKLQIWDTA-------GQER-----------FRTITTAYYRGAMGIMLVYDITNEKSFD   95 (173)
T ss_dssp             EEETTEEEEEEEEEC---------------------------CCTTTTTCSEEEEEEETTCHHHHH
T ss_pred             EEECCEEEEEEEEECC-------Cchh-----------hHHHHHHhccCCCEEEEEEECCChhhHH
Confidence            455665  45669999       5211           1112344567999999999987544433

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=83.25  E-value=0.46  Score=38.99  Aligned_cols=50  Identities=22%  Similarity=0.283  Sum_probs=30.4

Q ss_pred             CCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCC
Q 036659           11 GAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVR   79 (300)
Q Consensus        11 ~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~   79 (300)
                      |+|-..... ...++++.+++||||       |=.|+       ..|+.+.+..+    ++.|||+.+.
T Consensus        66 g~ti~~~~~-~~~~~~~~i~iiDtP-------GH~df-------~~~~~~g~~~~----D~allVVda~  115 (224)
T d1jnya3          66 GVTINLTFM-RFETKKYFFTIIDAP-------GHRDF-------VKNMITGASQA----DAAILVVSAK  115 (224)
T ss_dssp             --------C-EEECSSCEEEECCCS-------SSTTH-------HHHHHHTSSCC----SEEEEEEECS
T ss_pred             CccccceEE-EEecCCceeEEeeCC-------CcHHH-------HHHHHHHHHhh----ceEEEEEecc
Confidence            334333333 356889999999999       75553       46777776654    5777777775

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.29  E-value=1.4  Score=39.33  Aligned_cols=70  Identities=23%  Similarity=0.249  Sum_probs=44.4

Q ss_pred             eeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhhh
Q 036659           23 RIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNVF  102 (300)
Q Consensus        23 ~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i~  102 (300)
                      .+++..+++||||       |-.|+.       .|+..++..| +   +.|||+.+..-.+.+.+..+.....   .+  
T Consensus        92 ~~~~~~inliDtP-------Gh~dF~-------~ev~~al~~~-D---~allVVda~eGv~~qT~~~~~~a~~---~~--  148 (341)
T d1n0ua2          92 DGNSFLINLIDSP-------GHVDFS-------SEVTAALRVT-D---GALVVVDTIEGVCVQTETVLRQALG---ER--  148 (341)
T ss_dssp             CSSEEEEEEECCC-------CCCSSC-------HHHHHHHHTC-S---EEEEEEETTTBSCHHHHHHHHHHHH---TT--
T ss_pred             cccceEEEEEcCC-------CcHHHH-------HHHHHHHhhc-C---ceEEEEecccCcchhHHHHHHHHHH---cC--
Confidence            4567889999999       887775       4667777654 3   4556666555777776666655432   22  


Q ss_pred             cceEEEEEcCCCC
Q 036659          103 DYMIVVFTGGDEL  115 (300)
Q Consensus       103 ~y~IVlFT~gD~L  115 (300)
                      --+||+++.=|.+
T Consensus       149 ~p~i~viNKiDr~  161 (341)
T d1n0ua2         149 IKPVVVINKVDRA  161 (341)
T ss_dssp             CEEEEEEECHHHH
T ss_pred             CCeEEEEECcccc
Confidence            2456666654543

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=82.16  E-value=4  Score=30.64  Aligned_cols=79  Identities=19%  Similarity=0.169  Sum_probs=50.0

Q ss_pred             ceeeCCEEEEEEeCCCCcccCcccCCCCCCh--HHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 036659           21 TIRIQVVLEKVIDTRWVRHAIARLFDFSAGS--KFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFG   98 (300)
Q Consensus        21 t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~--e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG   98 (300)
                      .....+..+.+.|||       |+++.....  .........-+    ...++++++......++.+++..+..++. .|
T Consensus        42 ~~~~~~~~~~~~d~~-------g~~~~~~~~~~~~~~~~~~~~~----~~ad~i~~~~~~~~~~~~~~~~~~~~l~~-~~  109 (171)
T d1mkya1          42 TVEWYGKTFKLVDTC-------GVFDNPQDIISQKMKEVTLNMI----READLVLFVVDGKRGITKEDESLADFLRK-ST  109 (171)
T ss_dssp             EEEETTEEEEEEECT-------TTTSSGGGCCCHHHHHHHHHHH----TTCSEEEEEEETTTCCCHHHHHHHHHHHH-HT
T ss_pred             ccccccccccccccc-------ceeeeecccccccccccccccc----ccCcEEEEeeccccccccccccccccccc-cc
Confidence            355678899999999       776644221  22222222222    34468888888877899988877766653 34


Q ss_pred             hhhhcceEEEEEcCCCC
Q 036659           99 KNVFDYMIVVFTGGDEL  115 (300)
Q Consensus        99 ~~i~~y~IVlFT~gD~L  115 (300)
                      .    ..||+.+--|-+
T Consensus       110 ~----pviiv~NK~Dl~  122 (171)
T d1mkya1         110 V----DTILVANKAENL  122 (171)
T ss_dssp             C----CEEEEEESCCSH
T ss_pred             c----cccccchhhhhh
Confidence            3    467777766754

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.26  E-value=2.9  Score=34.86  Aligned_cols=51  Identities=18%  Similarity=0.141  Sum_probs=33.5

Q ss_pred             CCCCccccCCCceeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCC
Q 036659           10 FGAPKTAPLPPTIRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVR   79 (300)
Q Consensus        10 ~~vT~tC~~~~t~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~   79 (300)
                      .|+|-.+... ...+.++++++||||       |-.|+       .+++.+-+.    -.++.|||+...
T Consensus        68 rGiTi~~~~~-~~~~~~~~i~iiDtP-------GH~df-------~~~~~~g~~----~~D~ailvvda~  118 (239)
T d1f60a3          68 RGITIDIALW-KFETPKYQVTVIDAP-------GHRDF-------IKNMITGTS----QADCAILIIAGG  118 (239)
T ss_dssp             TTCCCSCSCE-EEECSSEEEEEEECC-------CCTTH-------HHHHHHSSS----CCSEEEEEEECS
T ss_pred             ceecccccee-EeccCCEEEEEEECC-------CcHHH-------HHHHHHHHH----HhCEEEEEEECC
Confidence            3455544443 356889999999999       86664       245554333    457888888764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.04  E-value=4.6  Score=30.61  Aligned_cols=40  Identities=18%  Similarity=0.189  Sum_probs=25.1

Q ss_pred             eeCCE--EEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCC
Q 036659           23 RIQVV--LEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRS   80 (300)
Q Consensus        23 ~~~Gr--~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~   80 (300)
                      ..++.  .+.+.|||       |.-+...-..       .    ...++|++|+|+.+.+
T Consensus        50 ~~~~~~~~~~i~Dt~-------G~~~~~~~~~-------~----~~~~~~~ii~v~d~~~   91 (177)
T d1x3sa1          50 SVDGNKAKLAIWDTA-------GQERFRTLTP-------S----YYRGAQGVILVYDVTR   91 (177)
T ss_dssp             EETTEEEEEEEEEEC-------SSGGGCCSHH-------H----HHTTCCEEEEEEETTC
T ss_pred             EEeccccEEEEEECC-------CchhhHHHHH-------H----HHhcCCEEEEEEECCC
Confidence            45555  57888999       6433222111       1    1358999999999873

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=80.98  E-value=8.5  Score=28.32  Aligned_cols=83  Identities=10%  Similarity=0.083  Sum_probs=50.6

Q ss_pred             eeeCCEEEEEEeCCCCcccCcccCCCCCChHHHHHHHHHhhccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhchhh
Q 036659           22 IRIQVVLEKVIDTRWVRHAIARLFDFSAGSKFVGKEIVTCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSWQTLFGKNV  101 (300)
Q Consensus        22 ~~~~Gr~v~VIDTP~w~~~~~glfd~~~~~e~v~kEI~~ci~l~~pGpHA~LLV~~v~~rfT~EE~~al~~lq~lFG~~i  101 (300)
                      ...++..+.++|||       |.           ............+.|++++|+.+.++-+-++  +...+........
T Consensus        41 ~~~~~~~~~~~D~~-------G~-----------~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~--~~~~~~~~~~~~~  100 (165)
T d1ksha_          41 LEHRGFKLNIWDVG-------GQ-----------KSLRSYWRNYFESTDGLIWVVDSADRQRMQD--CQRELQSLLVEER  100 (165)
T ss_dssp             EEETTEEEEEEEEC-------CS-----------HHHHTTGGGGCTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGG
T ss_pred             ccccccceeeeecC-------cc-----------hhhhhHHHhhhhhhhcceeeeecccchhHHH--HHHhhhhhhhhcc
Confidence            45678899999999       52           1123344556779999999999875544433  3445555544332


Q ss_pred             h--cceEEEEEcCCCCCCCcccHHHhh
Q 036659          102 F--DYMIVVFTGGDELEDNDETLEDYL  126 (300)
Q Consensus       102 ~--~y~IVlFT~gD~Le~~~~tledyl  126 (300)
                      .  ...+||.|..| +.+. .++++..
T Consensus       101 ~~~~p~iiv~nK~D-l~~~-~~~~~~~  125 (165)
T d1ksha_         101 LAGATLLIFANKQD-LPGA-LSCNAIQ  125 (165)
T ss_dssp             GTTCEEEEEEECTT-STTC-CCHHHHH
T ss_pred             cCCCceEEEEeccc-cccc-cCHHHHH
Confidence            2  24677778777 4332 3454443