Citrus Sinensis ID: 036679

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
Protein Sequence
DSPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVSICGPNVRLVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISSPYLKKLLVRFCNKLYEFKLDTPNLSVFDYEGDMVSFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAIIPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCNDCDHEFCFQ
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEEEccHHHHHHHHHccccccEEEEEccccccEEEEcccccccEEEEEccccccEEEEEccccEEEEcccccccccccccccccccEEEcccccccHHHHHHHccccccccEEcccccccEEEEEEccccccEEEEcccccccEEEEccccEEEEEEccccccccccccccccEEEEEEEccccHHHHHHHHHHHHHccccccHHEEEcccEEEcccccccccccccccccEEEEEEEEccccccHHHHHHHHHHccccccEEEEEEccccccEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccHHEEEEEEEcccHHHHHHHHHccccHEEEEEEEccccEEEEEccccccEEEEEEcccccEEEEEEcccEEEEEEcccccccEEEEcccccccEEEEccccccHHHHHHHHccccHHHEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEcccccccccccccccEEEEEEEcccccHHHHHHHHHHHHHcccccEEEEEEEEEEEEEccHHcccccccccccccEEEEEccccccccHHHHHHHHHHHcccccEEEEEEccccEEEEEc
Coil and Loop (DISEMBL)
dsptrnvtlSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIidcrglksleflnlgklskfmvrnedrlarvsicgpnvrlvdisslhapcgiNVALCKNLKELKLFKLSITNEWlcnqfselpflEYLEIFRCMKIRSIKISSPYLKKLLVRFCNKLYEfkldtpnlsvfdyegdmvsfssnalalsetsLCLDSINVDNQWLVKFIELLAKLNhcsnvlnlecyAAAIIPRELREIlsspltyenHVCFIINSEYNTFSLAKLLDSLLwisphaetlsikcndcdhefcfq
Flexible Loop (DISEMBL)
dsptrnvtlsslrELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVSICGPNVRLVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRsikisspyLKKLLVRFCNKLYEFKLDTPNLSVFDYEGDMVSFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAIIPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCNDCDHEFCFQ
Low Complexity Region (SEG)
DSPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVSICGPNVRLVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISSPYLKKLLVRFCNKLYEFKLDTPNLSVFDYEGDMVSFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAIIPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCNDCDHEFCFQ
Disordered region (IsUnstruct)
**********SLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVSICGPNVRLVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISSPYLKKLLVRFCNKLYEFKLDTPNLSVFDYEGDMVSFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAIIPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCNDCDHEFCF*
Disordered Region (DISOPRED)
**PTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVSICGPNVRLVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISSPYLKKLLVRFCNKLYEFKLDTPNLSVFDYEGDMVSFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAIIPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCNDCDHEFCFQ
Disordered Region (DISEMBL)
********LSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVSICGPNVRLVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISSPYLKKLLVRFCNKLYEFKLDTPNLSVFDYEGDMVSFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAIIPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCNDCDHEFCFQ
Disordered Region (DISPRO)
***TRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVSICGPNVRLVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISSPYLKKLLVRFCNKLYEFKLDTPNLSVFDYEGDMVSFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAIIPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCNDCDHEFCFQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
DSPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVSICGPNVRLVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISSPYLKKLLVRFCNKLYEFKLDTPNLSVFDYEGDMVSFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAIIPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCNDCDHEFCFQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	294	2.2.26 [Sep-21-2011]
Q84W80	481	F-box/LRR-repeat protein	yes	no	0.5	0.305	0.248	6e-08
Q9LZ15	456	Putative F-box/LRR-repeat	no	no	0.312	0.201	0.311	2e-05
Q9LSJ3	465	Putative F-box/LRR-repeat	no	no	0.312	0.197	0.301	4e-05
Q1PE04	258	F-box/LRR-repeat protein	no	no	0.323	0.368	0.252	0.0007

>sp|Q84W80|FBL42_ARATH F-box/LRR-repeat protein At3g03360 OS=Arabidopsis thaliana GN=At3g03360 PE=2 SV=2

 Score = 58.5 bits (140), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 74/149 (49%), Gaps = 2/149 (1%)

Query: 3   PTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKF 62
           P  +V+ +SL+ L L+ C  +DE+I  I++GCP++E L +  C+ LK L+     +L   
Sbjct: 180 PKCSVSWTSLKNLSLYHCNISDESIAIILSGCPILESLLLFFCKKLKVLDLSKSPRLITL 239

Query: 63  MVRNEDRLARVSICGPNVRLVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFS 122
            +    R+    +  P++R + + +   PC +      +  EL +   +I +  L   F 
Sbjct: 240 EITRRCRMEPTQLVAPHIRCLRLINSEKPCALVDVSSLSQAELDITAYAIVDNKLEADFH 299

Query: 123 ELPFLEYLEIFRCMKIRSIKISSPYLKKL 151
           +   ++ LE  +C  +  + + + +LK L
Sbjct: 300 QTMVVKMLE--KCQNVEKLTLGANFLKML 326

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ15|FBL78_ARATH Putative F-box/LRR-repeat protein At5g02700 OS=Arabidopsis thaliana GN=At5g02700 PE=4 SV=1

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 3   PTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKF 62
           PT  V+  SLR L L  C   DE+I +I++GCP++E L +  CR L+ L+      L + 
Sbjct: 161 PTCTVSWKSLRNLTLRFCQIPDESIHNILSGCPILESLTLDTCRLLERLDLSKSPNLRRL 220

Query: 63  MVRNE-DRLARVSICGPNVRLVDISSLHAPCGI 94
            +  +  R   V+I  P++  + ++    P  I
Sbjct: 221 DINQQYRRTGPVAIVAPHIYYLRLTYSSTPSTI 253

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSJ3|FBL48_ARATH Putative F-box/LRR-repeat protein At3g28410 OS=Arabidopsis thaliana GN=At3g28410 PE=4 SV=2

 Score = 48.9 bits (115), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 3   PTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKF 62
           PT  V+  SLR L L  C   DE++ +I++GCP++E L +  CR L+ L+      L + 
Sbjct: 162 PTCAVSWKSLRNLTLRFCQIPDESMHNILSGCPILESLTLDTCRLLERLDLSKSPNLRRL 221

Query: 63  MV-RNEDRLARVSICGPNVRLVDISSLHAPCGI 94
            + R   R   ++I  P++  + ++    P  I
Sbjct: 222 DINRQYRRTGPIAIVAPHIYYLRLTYSSTPSTI 254

Arabidopsis thaliana (taxid: 3702)

>sp|Q1PE04|FBL25_ARATH F-box/LRR-repeat protein 25 OS=Arabidopsis thaliana GN=FBL25 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 4/99 (4%)

Query: 2   SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSK 61
           +P+  V+ +SLR+L L +C  +D++   I++GCP++E L +  C  LK L+     +L++
Sbjct: 160 TPSCIVSWTSLRDLSLTRCNLSDKSFLKILSGCPILESLSLKFCESLKYLDLSKSLRLTR 219

Query: 62  FMVRN----EDRLARVSICGPNVRLVDISSLHAPCGINV 96
             +       + +  + I  P++  + +    A C   V
Sbjct: 220 LEIERRSCFREPMQSMQIVAPHIHYLRLRDSEAHCTFLV 258

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
449476923	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.935	0.586	0.358	1e-41
449458247	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.942	0.590	0.356	2e-41
147833276	521	hypothetical protein VITISV_011919 [Viti	0.921	0.520	0.320	2e-22
255549680	514	hypothetical protein RCOM_1485780 [Ricin	0.840	0.480	0.360	2e-22
297743071	552	unnamed protein product [Vitis vinifera]	0.931	0.496	0.312	5e-20
225442254	520	PREDICTED: putative F-box protein At3g44	0.931	0.526	0.312	5e-20
147770772	862	hypothetical protein VITISV_008876 [Viti	0.904	0.308	0.297	3e-15
356557323	833	PREDICTED: uncharacterized protein LOC10	0.846	0.298	0.273	4e-14
224124628	524	f-box family protein [Populus trichocarp	0.860	0.482	0.25	7e-14
357495939	519	FBD-associated F-box protein [Medicago t	0.581	0.329	0.318	3e-13

>gi|449476923|ref|XP_004154877.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 99/276 (35%), Positives = 154/276 (55%), Gaps = 1/276 (0%)

Query: 9   LSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNED 68
           L S++ + L    A DE ++ +V+ CP I+ +K+  C GL++L      +L    V+N  
Sbjct: 154 LLSMKSVSLLGVFAEDETVKRLVSNCPFIQHIKLDSCLGLRNLWLCETNELITMEVQNNS 213

Query: 69  RLARVSICGPNVRLVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLE 128
            L        N++  +      PC IN++ CKNLK LKL  ++IT++W    FSE P LE
Sbjct: 214 GLYEFGTKAMNLQAFEFRGQFQPCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLE 273

Query: 129 YLEIFRCMKIRSIKISSPYLKKLLVRFCNKLYEFKLDTPNLSVFDYEGDMVSFSSNALAL 188
            L +  C  + S++ISS +LKK ++  C  +    +DTP LS  ++ GD++SFS NA AL
Sbjct: 274 ILALSYCHMLESLRISSSHLKKFILCGCESVTRVDIDTPCLSGLEFSGDVISFSLNAPAL 333

Query: 189 SETSLCLDSINVDNQWLVKFIELLAKLNHCSNV-LNLECYAAAIIPRELREILSSPLTYE 247
           S+  + L     DN W+VK IE LA  NH  ++ L  +   + +IP+ELRE   SPL   
Sbjct: 334 SQADIELSPRIFDNPWVVKQIEFLAHFNHLKSLTLQSQTGKSVVIPQELRETFGSPLYGV 393

Query: 248 NHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIK 283
            H+   I     + SL  L+ +LLWI+P  +T++++
Sbjct: 394 KHLKLRIIKPLFSPSLKDLVKALLWIAPQPQTIAVE 429

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458247|ref|XP_004146859.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 99/278 (35%), Positives = 153/278 (55%), Gaps = 1/278 (0%)

Query: 9   LSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNED 68
           L S++ + L    A DE ++ +V+ CP I+ +K+  C GL+SL      +L    V+N  
Sbjct: 154 LLSMKSVSLLGVFAEDETVKRLVSNCPFIQHIKLDSCLGLRSLWLCETNELITMEVQNNS 213

Query: 69  RLARVSICGPNVRLVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLE 128
            L        N++  +      PC IN++ CKNLK LKL  ++IT++W    FSE P LE
Sbjct: 214 GLYEFGTKAMNLQAFEFRGQFQPCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLE 273

Query: 129 YLEIFRCMKIRSIKISSPYLKKLLVRFCNKLYEFKLDTPNLSVFDYEGDMVSFSSNALAL 188
            L +  C  + S++ISS +LKK ++  C  +    +D P LS  ++ GD++SFS NA AL
Sbjct: 274 ILALSYCHMLESLRISSSHLKKFILCGCESVTRVDIDAPCLSGLEFSGDVISFSLNAPAL 333

Query: 189 SETSLCLDSINVDNQWLVKFIELLAKLNHCSNV-LNLECYAAAIIPRELREILSSPLTYE 247
           S+  + L     DN W+VK IE LA  NH  ++ L  +   + +IP+ELRE   SPL   
Sbjct: 334 SQADIELSPRIFDNPWVVKQIEFLAHFNHLKSLTLQSQTGKSVVIPQELRETFGSPLYGV 393

Query: 248 NHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCN 285
            H+   I     + SL  L+ +LLWI+P  +T++++  
Sbjct: 394 KHLKLRIIKPLFSPSLKDLVKALLWIAPQPQTIAVESG 431

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833276|emb|CAN68530.1| hypothetical protein VITISV_011919 [Vitis vinifera] gi|297743067|emb|CBI35934.3| unnamed protein product [Vitis vinifera]

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/287 (32%), Positives = 149/287 (51%), Gaps = 16/287 (5%)

Query: 6   NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVR 65
           ++ L +LR+L L +   +++AIR +++ CPLIE L I  C GL+ L    L  L +  V 
Sbjct: 160 DIDLPALRKLCLRQIRCDEQAIRQLISSCPLIEDLDIASCGGLQKLHVSGLANLHRLEVI 219

Query: 66  NEDRLARVSICGPNVRLVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELP 125
               L R+ I  P+++ +       PC + +  C+ L+EL L    ITN++L N  S  P
Sbjct: 220 CCYNLRRIEIDAPSLQHLVYHCGRLPCDMVLTPCEFLRELILHDPHITNDFLQNLDSGFP 279

Query: 126 FLEYLEIFRCMKIRSIKISSPYLKKLLVRFC--NKLYEFKLDTPNLSVFDYEGDMVSFSS 183
            LE LEI    +++ I+IS   LK+L ++     K  + K+D PNL  F Y G  +  +S
Sbjct: 280 NLERLEI-DSTRLQRIEISHHQLKRLELKLTPLQKEAKLKIDAPNLQSFTYSGYRMPLTS 338

Query: 184 NALALSETSLCLDSINVDNQ------WLVKFIELLAKLNHCSNVLNL--ECYAAAIIPRE 235
              +++ +SL    I+  N       ++ +  E   K  +C  V+NL  +     IIPR+
Sbjct: 339 TISSMNTSSLREAEIHFRNYNDYSHFFIPQLKEFFEKSKNC-QVINLLIKSKEELIIPRK 397

Query: 236 LREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSI 282
           LR ILS P+    H+ ++  S  + F    ++D +LW+  H +TLSI
Sbjct: 398 LRPILSPPVYDIKHL-YLRVSYCSRFQY--IIDRMLWMC-HPQTLSI 440

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549680|ref|XP_002515891.1| hypothetical protein RCOM_1485780 [Ricinus communis] gi|223544796|gb|EEF46311.1| hypothetical protein RCOM_1485780 [Ricinus communis]

 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/266 (36%), Positives = 139/266 (52%), Gaps = 19/266 (7%)

Query: 27  IRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVSICGPNVRLVDIS 86
           I++++  CPLI+ L++I C GLK+L  L+  KL +  +     L  V +  PN++     
Sbjct: 2   IQNLMLSCPLIDDLRLIYCTGLKTL-LLSSNKLYRVDIHFCHGLKNVEVLSPNLQTFWYH 60

Query: 87  SLHAP-CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISS 145
              +  C IN+A+CK+LK L L   +++++W  N  S    +E L + +C  +R I IS 
Sbjct: 61  GKKSTRCKINLAMCKDLKSLTLEDANMSDDWFQNLLSNFSLIEQLILSKCNALRHITISG 120

Query: 146 PYLKKLLVRFCNKLYEFKLDTPNLSVFDYEGDMVSFSS-NALALSETSLCLDS--INVDN 202
            +LKKL +  C +L E  +DTPNL  F+Y G  + FSS N  +L E  L  +S  +  DN
Sbjct: 121 RWLKKLALMECRELTEADIDTPNLLSFEYRGQKMPFSSLNPFSLKEAKLYFESSRLQPDN 180

Query: 203 QWLVKFIELLAKLNH--CSNVLNL--ECYAAAIIPRELREILSSPLTYENHVCFIINSEY 258
              + F EL   L+   CS  L L        II  +LREIL  P  ++  +  I  S  
Sbjct: 181 GGQLLFYELRNFLHRFDCSKSLKLVIRSNKDVIIHEDLREIL-VPEIFDVKLEIIKPST- 238

Query: 259 NTFSLAKLLDSLL--WISPHAETLSI 282
              SL  +LDSLL  W   H ETLSI
Sbjct: 239 ---SLEVILDSLLRTW---HPETLSI 258

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743071|emb|CBI35938.3| unnamed protein product [Vitis vinifera]

 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 147/291 (50%), Gaps = 17/291 (5%)

Query: 6   NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVR 65
           +V L +LR+L L K   +++AIR +++ CPLIE L I+ C  LK L    L  L + +V 
Sbjct: 192 DVDLPALRKLCLRKILCDEQAIRQLISSCPLIEDLDIVSCGKLKKLHVSGLANLHRLVVT 251

Query: 66  NEDRLARVSICGPNVRLVDISSLHA-PCGINVALCKNLKELKLFKLSITNEWLCNQFSEL 124
               L R+ I  P+++        +  C +     + L+EL L    ITN+ L N  S +
Sbjct: 252 CCYNLRRIEIDAPSLQYFMYDHQRSLLCDVVWTPGEFLRELILHDRHITNDLLQNLVSGV 311

Query: 125 PFLEYLEIFRCMKIRSIKISSPYLKKLLVRFC--NKLYEFKLDTPNLSVFDYEGDMVSFS 182
           P LE LEI    +++ I+IS   LK+L +R     +  + K+D PNL  F Y G  +  +
Sbjct: 312 PNLERLEI-DSTRLQRIEISHHQLKRLELRLSEWQREAKLKIDAPNLQSFTYLGYRMPLT 370

Query: 183 SNALALSETSLCLDSINVDN------QWLVKFIELLAKLNHCSNVLNL--ECYAAAIIPR 234
           S   +++ +SL    I+  N       ++++  E   K  +C  V+NL  +     IIPR
Sbjct: 371 SMISSMNTSSLREAEIHFRNCNDYSHFFILQLKEFFEKSKNC-QVINLLIKSKEELIIPR 429

Query: 235 ELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCN 285
           +LR I S P+    H+  I+   Y       ++D +LW+  H +TLSI+ +
Sbjct: 430 KLRPIPSPPVYDIKHLHLIV---YYCSRFQYIIDRMLWMC-HPQTLSIETS 476

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442254|ref|XP_002275641.1| PREDICTED: putative F-box protein At3g44060 [Vitis vinifera]

 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 147/291 (50%), Gaps = 17/291 (5%)

Query: 6   NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVR 65
           +V L +LR+L L K   +++AIR +++ CPLIE L I+ C  LK L    L  L + +V 
Sbjct: 160 DVDLPALRKLCLRKILCDEQAIRQLISSCPLIEDLDIVSCGKLKKLHVSGLANLHRLVVT 219

Query: 66  NEDRLARVSICGPNVRLVDISSLHA-PCGINVALCKNLKELKLFKLSITNEWLCNQFSEL 124
               L R+ I  P+++        +  C +     + L+EL L    ITN+ L N  S +
Sbjct: 220 CCYNLRRIEIDAPSLQYFMYDHQRSLLCDVVWTPGEFLRELILHDRHITNDLLQNLVSGV 279

Query: 125 PFLEYLEIFRCMKIRSIKISSPYLKKLLVRFC--NKLYEFKLDTPNLSVFDYEGDMVSFS 182
           P LE LEI    +++ I+IS   LK+L +R     +  + K+D PNL  F Y G  +  +
Sbjct: 280 PNLERLEI-DSTRLQRIEISHHQLKRLELRLSEWQREAKLKIDAPNLQSFTYLGYRMPLT 338

Query: 183 SNALALSETSLCLDSINVDN------QWLVKFIELLAKLNHCSNVLNL--ECYAAAIIPR 234
           S   +++ +SL    I+  N       ++++  E   K  +C  V+NL  +     IIPR
Sbjct: 339 SMISSMNTSSLREAEIHFRNCNDYSHFFILQLKEFFEKSKNC-QVINLLIKSKEELIIPR 397

Query: 235 ELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCN 285
           +LR I S P+    H+  I+   Y       ++D +LW+  H +TLSI+ +
Sbjct: 398 KLRPIPSPPVYDIKHLHLIV---YYCSRFQYIIDRMLWMC-HPQTLSIETS 444

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770772|emb|CAN60954.1| hypothetical protein VITISV_008876 [Vitis vinifera]

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 126/272 (46%), Gaps = 6/272 (2%)

Query: 13  RELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLAR 72
           + + + K    D  ++D++    LIE L + DC   +++  L+  KL    + N  +L  
Sbjct: 149 KSIRVLKLTGLDLGLQDLILSDSLIEELSLNDCCVPETIRVLS-EKLLLLKLANCMKLRD 207

Query: 73  VSICGPNVRLVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEI 132
           + I  PN++         PC INV   ++LK L L    IT+ W+     +   L+ L I
Sbjct: 208 IEIDAPNLQSFTYDGGCEPCEINVGALESLKSLSLKNTLITDSWIEENVLKFISLQNLSI 267

Query: 133 FRCMKIRSIKISSPYLKKL-LVRFCNKL-YEFKLDTPNLSVFDYEGDMVSFSSNALALSE 190
             C  ++ +KI+   LK    V F NK+  E KL TP+L  F Y G +   +       +
Sbjct: 268 NGCRNLKKVKIAHGKLKNFEFVDFGNKVELELKLITPSLVSFFYTGILPLHTVITSTQFK 327

Query: 191 TSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAIIPRELREILSSPLTYENHV 250
             L L  I+   +W +    LL   NHC  VL LE     + P EL++   +P+    H+
Sbjct: 328 ARLSLTQISATIEWFLALRHLLVPFNHC-KVLTLEFKKQVVFPEELKDKWIAPMFGLKHL 386

Query: 251 CFIINSEYNTFSLAKLLDSLLWISPHAETLSI 282
              +NS   + S   L+  LL +SPH  TLSI
Sbjct: 387 RVEVNS--CSVSYRDLVAFLLQLSPHPNTLSI 416

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557323|ref|XP_003546966.1| PREDICTED: uncharacterized protein LOC100794867 [Glycine max]

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 127/260 (48%), Gaps = 11/260 (4%)

Query: 6   NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVR 65
           N+ L  L++L L K    +  I+++++ C  +E L+II C GLK L   NL +L +  + 
Sbjct: 317 NIKLPYLQKLYLRKIPLVENFIQNLISCCHSVEDLRIIKCSGLKHLHVSNLIRLKRAEIH 376

Query: 66  NEDRLARVSICGPNVRLVDI-SSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSEL 124
           +  +L +V I  PN+          +PC +++  C +LK L L    +T ++  NQFS  
Sbjct: 377 HCIQLKKVEISAPNLDTFWYCGKKTSPCKVSLEGCTSLKRLTLEHPQVTRDFCENQFSNF 436

Query: 125 PFLEYLEI-FRCMKIRSIKISSPYLKKLLVRFCNKLYEFKLDTPNLSVFDYEGDMVSFSS 183
           P LE L++     K R I IS+P+L+K  ++ C KL    ++ PNL  F+ +G+ + +  
Sbjct: 437 PLLEKLDLSMSNNKSRFIIISNPHLEKFTLKGCKKLGIVLVEAPNLLSFECKGETMPWVE 496

Query: 184 -NALALSETSLCL------DSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAIIPREL 236
            +   L++  L          +   ++  ++    + K N     L L    + +I  +L
Sbjct: 497 IHPFGLTQAKLSFVPKSEPRVVGYGDKIWIRMKSFIQKFNRERFKLVLYSNKSIVIHEDL 556

Query: 237 REILSSPLTYENHVCFIINS 256
             ++  P+   +  C IINS
Sbjct: 557 NNVILPPV--PDLGCEIINS 574

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124628|ref|XP_002319379.1| f-box family protein [Populus trichocarpa] gi|222857755|gb|EEE95302.1| f-box family protein [Populus trichocarpa]

 Score = 84.0 bits (206), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 129/264 (48%), Gaps = 11/264 (4%)

Query: 25  EAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVSICGPNVRLVD 84
           E  +++V   P I+ L++  C+G+++L  ++   L   ++ +  RL +V I   N+    
Sbjct: 175 EPPQNLVLDFPFIKELRLEKCKGMQTLS-VSSQTLKIVVLESCQRLEKVEIDASNLESFS 233

Query: 85  ISS-LHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKI 143
                ++ C +++  CK+L+ L L    IT+EW+ ++ ++   LE  ++  C  + +  +
Sbjct: 234 FGGGANSSCSVDITACKSLEYLSLKNAEITDEWIKHEVAQFLRLEVFKVVGCRLLENFHV 293

Query: 144 SSPYLKKLLVRFCNKLYEFKLDTPNLSVFDYEGDMVSFSSNALALSETSLCLDSINVD-- 201
           S+  LK + +  C+ L + ++ + +L+ F Y G ++   S     S +     S++VD  
Sbjct: 294 SNANLKTVELSDCSNLQKIEIYSRSLNTFVYGGQLM--PSQVFIYSPSFHAKVSLSVDHP 351

Query: 202 --NQWLVKFIELLAKLNHCSNVLNLECY--AAAIIPRELREILSSPLTYENHVCFIINSE 257
             + W   F + L+  +HC   L + C    A I+P + R+ L  PL    ++  +    
Sbjct: 352 LPHDWFSSFRDFLSCFDHCKE-LEIACSIEMALIVPIDSRDSLLPPLYDLKYLKVVAKFP 410

Query: 258 YNTFSLAKLLDSLLWISPHAETLS 281
             +  L  LLDSLLW +P    LS
Sbjct: 411 TKSEDLVGLLDSLLWFAPRLTVLS 434

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495939|ref|XP_003618258.1| FBD-associated F-box protein [Medicago truncatula] gi|355493273|gb|AES74476.1| FBD-associated F-box protein [Medicago truncatula]

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 92/182 (50%), Gaps = 11/182 (6%)

Query: 6   NVTLSSLRELGLFKCAANDE-AIRDIVAGCPLIERLKIIDCR------GLKSLEFLNLGK 58
           ++   SLREL L +    DE AI  +++ CPLIE + +  C       G + +E++++  
Sbjct: 172 SIKFFSLRELSLTRVLFGDEHAINQLISFCPLIEYITLDLCEVLSSGGGTRYMEYVSISG 231

Query: 59  LSKFMVRNEDRLARVSICGPNVR--LVDISSLHAPCGINVALCKNLKELKLFKL--SITN 114
           L      +   +  VSI   ++     +  +  AP  I+   C+NLKEL L+ +  + TN
Sbjct: 232 LQNLKSVDVSAIQDVSIDASSLENFCYNTKNYGAPSKIDFDRCRNLKELYLWSVESTSTN 291

Query: 115 EWLCNQFSELPFLEYLEIFRCMKIRSIKISSPYLKKLLVRFCNKLYEFKLDTPNLSVFDY 174
           +W    F + PFLE L++  C   + I ISS  LK+L     + L E  +D+PNL  F Y
Sbjct: 292 KWFLELFPKFPFLESLKLNNCKMPKKIDISSVRLKRLEFMHSSNLKELNIDSPNLISFGY 351

Query: 175 EG 176
            G
Sbjct: 352 SG 353

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
TAIR|locus:2099644	481	AT3G03360 [Arabidopsis thalian	0.503	0.307	0.246	2.2e-09
TAIR|locus:2143463	307	AT5G03100 "AT5G03100" [Arabido	0.517	0.495	0.253	0.0001
TAIR|locus:2092737	456	AT3G18150 "AT3G18150" [Arabido	0.469	0.302	0.239	0.00019
TAIR|locus:2151316	456	AT5G02700 "AT5G02700" [Arabido	0.312	0.201	0.311	0.00035
TAIR|locus:2151246	258	AT5G02920 "AT5G02920" [Arabido	0.309	0.352	0.252	0.00076

TAIR|locus:2099644 AT3G03360 [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 37/150 (24%), Positives = 75/150 (50%)

Query:     2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSK 61
             +P  +V+ +SL+ L L+ C  +DE+I  I++GCP++E L +  C+ LK L+     +L  
Sbjct:   179 NPKCSVSWTSLKNLSLYHCNISDESIAIILSGCPILESLLLFFCKKLKVLDLSKSPRLIT 238

Query:    62 FMVRNEDRLARVSICGPNVRLVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQF 121
               +    R+    +  P++R + + +   PC +      +  EL +   +I +  L   F
Sbjct:   239 LEITRRCRMEPTQLVAPHIRCLRLINSEKPCALVDVSSLSQAELDITAYAIVDNKLEADF 298

Query:   122 SELPFLEYLEIFRCMKIRSIKISSPYLKKL 151
              +   ++ LE  +C  +  + + + +LK L
Sbjct:   299 HQTMVVKMLE--KCQNVEKLTLGANFLKML 326

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2143463 AT5G03100 "AT5G03100" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 0.00010, P = 0.00010
 Identities = 40/158 (25%), Positives = 72/158 (45%)

Query:     2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSK 61
             +P   V+ SSLR L L +C  +D++I  I+ GC L+E L +  C  L  L+      L +
Sbjct:   139 NPKCVVSWSSLRNLSLNRCKVSDDSIAKILTGCSLLESLTLNLCDRLNDLDLSKSLSLRR 198

Query:    62 FMVRNEDRLARVSICGPNVRLVDISSLHAPCGINVALCKNLKELKL-FKLSITNEWLCNQ 120
               +   DR     I  P++R + + +   P  + V +  +L E  L     + + + C  
Sbjct:   199 LEILG-DRWTPERIVAPHIRYLRLENYQRPSTL-VDV-SSLTEANLGLSKHVLDYFTCEM 255

Query:   121 FSE-LPFLEYLEIFRCMKIRSIKISSPYLKKL-LVRFC 156
              +E L ++    + +   I+ + I   +L+ L L   C
Sbjct:   256 ETESLQYMVRQTVVKLQNIKKLTIGGIFLQILSLAELC 293

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092737 AT3G18150 "AT3G18150" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 0.00019, Sum P(2) = 0.00019
 Identities = 35/146 (23%), Positives = 70/146 (47%)

Query:    12 LRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNE---D 68
             L++L L  C  +DE++ +I+ GCP++E L +  C GL+ L+     +L    +       
Sbjct:   170 LKKLYLSTCLLSDESMANILFGCPILESLTLDHCGGLRVLDLSKSLRLRTLEINCNIWVP 229

Query:    69 RLARVSICGPNVRLVDISSLHAPCGINVALCKNLKELKL-FKLSITNEWLCNQFSELPFL 127
              L  + I  P+   + + +   PC + V +  +LKE KL   +   ++ +   F ++  L
Sbjct:   230 ELTAMQIVAPHTHCLRLRNSKLPCSL-VDV-SSLKEAKLNICIDSFSKTIKADFLQVTLL 287

Query:   128 EYLEIFRCMKIRSIKISSPYLKKLLV 153
             + LE  +   +  + +   +L+ L V
Sbjct:   288 KMLE--KLHNVEKLTLGGNFLQILSV 311

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151316 AT5G02700 "AT5G02700" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 0.00035, P = 0.00035
 Identities = 29/93 (31%), Positives = 48/93 (51%)

Query:     3 PTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKF 62
             PT  V+  SLR L L  C   DE+I +I++GCP++E L +  CR L+ L+      L + 
Sbjct:   161 PTCTVSWKSLRNLTLRFCQIPDESIHNILSGCPILESLTLDTCRLLERLDLSKSPNLRRL 220

Query:    63 MVRNE-DRLARVSICGPNVRLVDISSLHAPCGI 94
              +  +  R   V+I  P++  + ++    P  I
Sbjct:   221 DINQQYRRTGPVAIVAPHIYYLRLTYSSTPSTI 253

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151246 AT5G02920 "AT5G02920" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 0.00076, P = 0.00076
 Identities = 24/95 (25%), Positives = 50/95 (52%)

Query:     2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSK 61
             +P+  V+ +SLR+L L +C  +D++   I++GCP++E L +  C  LK L+     +L++
Sbjct:   160 TPSCIVSWTSLRDLSLTRCNLSDKSFLKILSGCPILESLSLKFCESLKYLDLSKSLRLTR 219

Query:    62 FMVRNE----DRLARVSICGPNVRLVDISSLHAPC 92
               +       + +  + I  P++  + +    A C
Sbjct:   220 LEIERRSCFREPMQSMQIVAPHIHYLRLRDSEAHC 254


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.139   0.423    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      294       294   0.00091  115 3  11 22  0.46    33
                                                     33  0.44    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  220 KB (2120 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.82u 0.13s 24.95t   Elapsed:  00:00:01
  Total cpu time:  24.82u 0.13s 24.95t   Elapsed:  00:00:01
  Start:  Fri May 10 01:11:10 2013   End:  Fri May 10 01:11:11 2013

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	294
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.56
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.47
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.35
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.31
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.14
KOG4341	483	consensus F-box protein containing LRR [General fu	99.12
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.04
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.01
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.98
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.96
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.94
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.88
KOG4341	483	consensus F-box protein containing LRR [General fu	98.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.81
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.75
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.61
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.59
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.59
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.59
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.38
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.38
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.27
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.21
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.15
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.11
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.09
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.9
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.87
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.83
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.83
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.73
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.59
KOG0472	565	consensus Leucine-rich repeat protein [Function un	97.59
PRK15386	426	type III secretion protein GogB; Provisional	97.5
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.49
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.45
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.4
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.38
PRK15386	426	type III secretion protein GogB; Provisional	97.3
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.25
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.15
KOG0472	565	consensus Leucine-rich repeat protein [Function un	97.02
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.94
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.85
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.84
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	96.83
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	96.81
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.8
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.63
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.61
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.58
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.47
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.31
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.27
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.18
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.01
PLN03150	623	hypothetical protein; Provisional	95.93
PLN03150	623	hypothetical protein; Provisional	95.73
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.65
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	95.47
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.3
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	95.09
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	94.81
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	94.76
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	94.62
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	93.73
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	93.67
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.43
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	93.34
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.1
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	93.05
PF08387	51	FBD: FBD; InterPro: IPR013596 This region is found	92.33
smart00579	72	FBD domain in FBox and BRCT domain containing plan	90.42
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	89.29
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	88.7
KOG4237	498	consensus Extracellular matrix protein slit, conta	82.79
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	81.14

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.56  E-value=7.8e-15  Score=146.76  Aligned_cols=175  Identities=11%  Similarity=0.046  Sum_probs=87.1

Q ss_pred             CCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCCcccc---cccCCc
Q 036679            3 PTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARV---SICGPN   79 (294)
Q Consensus         3 p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~l~~~---~~~~~~   79 (294)
                      |..+..+++|++|+|++|.+++.....+...+++|++|+++++.-........+++|++|++++|.-...+   ....++
T Consensus        86 ~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~  165 (968)
T PLN00113         86 SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSS  165 (968)
T ss_pred             ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCC
Confidence            33445677777777777766544444455567777777777664322233334556666666665411111   113456


Q ss_pred             ccEEEeeCCCC--CcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecc--c-ccccceEEee
Q 036679           80 VRLVDISSLHA--PCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKI--S-SPYLKKLLVR  154 (294)
Q Consensus        80 L~~L~l~~c~~--~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i--~-~~~L~~L~l~  154 (294)
                      |+.|++++|..  ..+..+..+++|++|+++++.+++. ++..+.++++|+.|+++++.-...++.  . .++|++|+++
T Consensus       166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  244 (968)
T PLN00113        166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ-IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV  244 (968)
T ss_pred             CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCc-CChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc
Confidence            66666666542  1222344555666666665554432 333345555666666555432211111  1 1455555555


Q ss_pred             cccCceeee---ccCCCccEEEEcCce
Q 036679          155 FCNKLYEFK---LDTPNLSVFDYEGDM  178 (294)
Q Consensus       155 ~c~~l~~~~---~~~p~L~~l~~~g~~  178 (294)
                      +|.....++   .+.++|++|++.++.
T Consensus       245 ~n~l~~~~p~~l~~l~~L~~L~L~~n~  271 (968)
T PLN00113        245 YNNLTGPIPSSLGNLKNLQYLFLYQNK  271 (968)
T ss_pred             CceeccccChhHhCCCCCCEEECcCCe
Confidence            554222222   123455555555443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.47  E-value=1.4e-13  Score=137.87  Aligned_cols=132  Identities=15%  Similarity=0.099  Sum_probs=77.6

Q ss_pred             CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee--ccCCCCCccEEEccccCCcccc---ccc
Q 036679            2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL--EFLNLGKLSKFMVRNEDRLARV---SIC   76 (294)
Q Consensus         2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l--~~~~l~~L~~L~l~~c~~l~~~---~~~   76 (294)
                      +|..+..+++|++|+|++|.+.. .++..+.++++|++|++++|.-...+  .+.++++|++|+++++.-...+   ...
T Consensus       156 ~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  234 (968)
T PLN00113        156 IPNDIGSFSSLKVLDLGGNVLVG-KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG  234 (968)
T ss_pred             CChHHhcCCCCCEEECccCcccc-cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence            46667788999999999987653 23344678889999999887532221  2345567777777766421111   123


Q ss_pred             CCcccEEEeeCCCCC--cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeeccc
Q 036679           77 GPNVRLVDISSLHAP--CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRC  135 (294)
Q Consensus        77 ~~~L~~L~l~~c~~~--~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c  135 (294)
                      .++|+.|++++|...  .+..++.+++|++|+++++.+++. ++..+.++++|+.|++++|
T Consensus       235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n  294 (968)
T PLN00113        235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP-IPPSIFSLQKLISLDLSDN  294 (968)
T ss_pred             CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc-CchhHhhccCcCEEECcCC
Confidence            456677777666521  223345556666666666655432 2233344555666665554

>PLN03210 Resistant to P

Probab=99.35  E-value=4.2e-12  Score=128.56  Aligned_cols=237  Identities=18%  Similarity=0.132  Sum_probs=131.1

Q ss_pred             CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec--cCCCCCccEEEccccCCccccc--ccC
Q 036679            2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE--FLNLGKLSKFMVRNEDRLARVS--ICG   77 (294)
Q Consensus         2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~--~~~l~~L~~L~l~~c~~l~~~~--~~~   77 (294)
                      +|.+...+++|+.|+|+++... ..++. ++.+++|+.|++++|..+..+.  +..+++|+.|++++|..++.+.  +..
T Consensus       626 L~~~~~~l~~Lk~L~Ls~~~~l-~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l  703 (1153)
T PLN03210        626 LWDGVHSLTGLRNIDLRGSKNL-KEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINL  703 (1153)
T ss_pred             cccccccCCCCCEEECCCCCCc-CcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCC
Confidence            3555667888888888876421 12222 4567888888888887765543  3456778888888777555442  245


Q ss_pred             CcccEEEeeCCCCCcccccccccccceEEecccccChH---------------------------HH-HHHhcCCCCCcE
Q 036679           78 PNVRLVDISSLHAPCGINVALCKNLKELKLFKLSITNE---------------------------WL-CNQFSELPFLEY  129 (294)
Q Consensus        78 ~~L~~L~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~---------------------------~l-~~l~~~~~~L~~  129 (294)
                      ++|+.|++++|...... .....+|++|++.++.+..-                           .+ ......+++|+.
T Consensus       704 ~sL~~L~Lsgc~~L~~~-p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~  782 (1153)
T PLN03210        704 KSLYRLNLSGCSRLKSF-PDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR  782 (1153)
T ss_pred             CCCCEEeCCCCCCcccc-ccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchh
Confidence            67777777777411000 00123444444444432210                           00 001122467888


Q ss_pred             Eeecccccceeecccc---cccceEEeecccCceeeec--cCCCccEEEEcCcee-eee-cCccccceEEEEEEEeccCh
Q 036679          130 LEIFRCMKIRSIKISS---PYLKKLLVRFCNKLYEFKL--DTPNLSVFDYEGDMV-SFS-SNALALSETSLCLDSINVDN  202 (294)
Q Consensus       130 L~l~~c~~l~~l~i~~---~~L~~L~l~~c~~l~~~~~--~~p~L~~l~~~g~~~-~~~-~~~~~L~~~~i~~~~~~~~~  202 (294)
                      |++++|+.+..++...   ++|+.|++.+|..++.++.  +.++|++++++|+.. ..+ ....+++.+.+.-..     
T Consensus       783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~-----  857 (1153)
T PLN03210        783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTG-----  857 (1153)
T ss_pred             eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCC-----
Confidence            8888777666554322   6788888888887776653  457788888887643 111 122345555542111     


Q ss_pred             hHHHHHHHHHhcCcccceeEEEee-eeeeecchhhhhccCCCCCCCceEEEEE
Q 036679          203 QWLVKFIELLAKLNHCSNVLNLEC-YAAAIIPRELREILSSPLTYENHVCFII  254 (294)
Q Consensus       203 ~~~~~~~~~l~~l~~l~~LL~~~~-~~~~~~p~~~~~~~~~~f~~Lk~L~L~~  254 (294)
                        ...++..+..+++|+.| .+.. .....+|..     ...+++|+.|.+..
T Consensus       858 --i~~iP~si~~l~~L~~L-~L~~C~~L~~l~~~-----~~~L~~L~~L~l~~  902 (1153)
T PLN03210        858 --IEEVPWWIEKFSNLSFL-DMNGCNNLQRVSLN-----ISKLKHLETVDFSD  902 (1153)
T ss_pred             --CccChHHHhcCCCCCEE-ECCCCCCcCccCcc-----cccccCCCeeecCC
Confidence              11123344566777774 4432 333445543     34556666666654

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.31  E-value=7.2e-12  Score=126.88  Aligned_cols=229  Identities=15%  Similarity=0.120  Sum_probs=151.4

Q ss_pred             CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec-cCCCCCccEEEccccCCcccccc---cC
Q 036679            2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE-FLNLGKLSKFMVRNEDRLARVSI---CG   77 (294)
Q Consensus         2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~-~~~l~~L~~L~l~~c~~l~~~~~---~~   77 (294)
                      +|... .+.+|+.|++.++.+.  .+..-+..+++|+.|+++++..++.+. ++.+++|++|++++|..+..+..   ..
T Consensus       604 lP~~f-~~~~L~~L~L~~s~l~--~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L  680 (1153)
T PLN03210        604 MPSNF-RPENLVKLQMQGSKLE--KLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYL  680 (1153)
T ss_pred             CCCcC-CccCCcEEECcCcccc--ccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhcc
Confidence            45444 5789999999999773  344446789999999999988766543 55678999999999986655432   45


Q ss_pred             CcccEEEeeCCCC--CcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec------------c
Q 036679           78 PNVRLVDISSLHA--PCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK------------I  143 (294)
Q Consensus        78 ~~L~~L~l~~c~~--~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~------------i  143 (294)
                      ++|+.|++++|..  ..+..+ .+++|+.|++++|..... ++.   ..++|+.|+++++. ++.++            +
T Consensus       681 ~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~-~p~---~~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l  754 (1153)
T PLN03210        681 NKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKS-FPD---ISTNISWLDLDETA-IEEFPSNLRLENLDELIL  754 (1153)
T ss_pred             CCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccc-ccc---ccCCcCeeecCCCc-cccccccccccccccccc
Confidence            7899999999862  122222 678999999998853221 221   13455666655432 11111            0


Q ss_pred             ---------------------cccccceEEeecccCceeeec---cCCCccEEEEcCcee-eee---cCccccceEEEEE
Q 036679          144 ---------------------SSPYLKKLLVRFCNKLYEFKL---DTPNLSVFDYEGDMV-SFS---SNALALSETSLCL  195 (294)
Q Consensus       144 ---------------------~~~~L~~L~l~~c~~l~~~~~---~~p~L~~l~~~g~~~-~~~---~~~~~L~~~~i~~  195 (294)
                                           ..++|+.|++++|..+..++.   +.++|+.|++.++.. ...   ...++|+.+.+. 
T Consensus       755 ~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls-  833 (1153)
T PLN03210        755 CEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLS-  833 (1153)
T ss_pred             cccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECC-
Confidence                                 125899999999987766653   578899999988743 111   234567666652 


Q ss_pred             EEeccChhHHHHHHHHHhcCcccceeEEEeeeeeeecchhhhhccCCCCCCCceEEEEE
Q 036679          196 DSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAIIPRELREILSSPLTYENHVCFII  254 (294)
Q Consensus       196 ~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~  254 (294)
                       .   +..    +..++...++++. |.++.+....+|..     ...+++|+.|.+..
T Consensus       834 -~---c~~----L~~~p~~~~nL~~-L~Ls~n~i~~iP~s-----i~~l~~L~~L~L~~  878 (1153)
T PLN03210        834 -G---CSR----LRTFPDISTNISD-LNLSRTGIEEVPWW-----IEKFSNLSFLDMNG  878 (1153)
T ss_pred             -C---CCc----cccccccccccCE-eECCCCCCccChHH-----HhcCCCCCEEECCC
Confidence             1   111    1223344467777 47777777778876     45788999999876

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.14  E-value=1.9e-11  Score=110.16  Aligned_cols=124  Identities=19%  Similarity=0.108  Sum_probs=59.1

Q ss_pred             CCCCcEEeecccccceeecccc----cccceEEeecccCceeeec----cCCCccEEEEcCcee-----eeecCccccce
Q 036679          124 LPFLEYLEIFRCMKIRSIKISS----PYLKKLLVRFCNKLYEFKL----DTPNLSVFDYEGDMV-----SFSSNALALSE  190 (294)
Q Consensus       124 ~~~L~~L~l~~c~~l~~l~i~~----~~L~~L~l~~c~~l~~~~~----~~p~L~~l~~~g~~~-----~~~~~~~~L~~  190 (294)
                      +..|+.|++++ +.+.++.+..    ++|+.|+++... ++.+.-    ....|++|.++.+.+     ..+.+.++|.+
T Consensus       292 Lt~L~~L~lS~-NaI~rih~d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~  369 (873)
T KOG4194|consen  292 LTSLEQLDLSY-NAIQRIHIDSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHK  369 (873)
T ss_pred             cchhhhhccch-hhhheeecchhhhcccceeEeccccc-cccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhh
Confidence            44555555554 3344444432    455555555443 222211    122344555554433     12334555665


Q ss_pred             EEEEEEEeccChhHHHHHHHHHhcCcccceeEEEeeeeeeecchhhhhccCCCCCCCceEEEEEccc
Q 036679          191 TSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAIIPRELREILSSPLTYENHVCFIINSE  257 (294)
Q Consensus       191 ~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~~~  257 (294)
                      +++.-+.+...  . .+....+.+++.|+. |.+.++....+|...    ...|.+|+||+|..|..
T Consensus       370 LdLr~N~ls~~--I-EDaa~~f~gl~~Lrk-L~l~gNqlk~I~krA----fsgl~~LE~LdL~~Nai  428 (873)
T KOG4194|consen  370 LDLRSNELSWC--I-EDAAVAFNGLPSLRK-LRLTGNQLKSIPKRA----FSGLEALEHLDLGDNAI  428 (873)
T ss_pred             hcCcCCeEEEE--E-ecchhhhccchhhhh-eeecCceeeecchhh----hccCcccceecCCCCcc
Confidence            55521111000  0 011223455777777 466666666676542    45577888888876533

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.12  E-value=3e-12  Score=110.91  Aligned_cols=269  Identities=17%  Similarity=0.182  Sum_probs=133.6

Q ss_pred             CccEEEeeecc-cChHHHHHHHhcCCCCCEEEEEcCCCCCee---cc-CCCCCccEEEccccCCcccc-----cccCCcc
Q 036679           11 SLRELGLFKCA-ANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EF-LNLGKLSKFMVRNEDRLARV-----SICGPNV   80 (294)
Q Consensus        11 ~Lk~L~L~~~~-~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~-~~l~~L~~L~l~~c~~l~~~-----~~~~~~L   80 (294)
                      .||.|++++|. +.++.+..+...||++|.|++.+|.++..-   ++ ..|++|+.+++..|..+...     .-.+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            56777777773 455667777777777777777777644211   11 12455555555555533222     2245555


Q ss_pred             cEEEeeCCCCCcc----cccc--------------------------cccccceEEeccc-ccChHHHHHHhcCCCCCcE
Q 036679           81 RLVDISSLHAPCG----INVA--------------------------LCKNLKELKLFKL-SITNEWLCNQFSELPFLEY  129 (294)
Q Consensus        81 ~~L~l~~c~~~~~----~~~~--------------------------~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~  129 (294)
                      +++++++|..-..    ....                          .++-+.++++..+ .++|+++..+-..|..|+.
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~  298 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV  298 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence            5555555541000    1112                          2233444454454 3666665555556777777


Q ss_pred             Eeecccccceeecc-----cccccceEEeecccCcee-----eeccCCCccEEEEcCcee-------eeecCccccceEE
Q 036679          130 LEIFRCMKIRSIKI-----SSPYLKKLLVRFCNKLYE-----FKLDTPNLSVFDYEGDMV-------SFSSNALALSETS  192 (294)
Q Consensus       130 L~l~~c~~l~~l~i-----~~~~L~~L~l~~c~~l~~-----~~~~~p~L~~l~~~g~~~-------~~~~~~~~L~~~~  192 (294)
                      |+.++|..+.+..+     .+++|+.+.+..|..+++     +.-+++.|+.++..++..       .-..+++.++++.
T Consensus       299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls  378 (483)
T KOG4341|consen  299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS  378 (483)
T ss_pred             hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence            77777776655332     225777777777776543     334667777777665543       1123455666665


Q ss_pred             EEEEEeccChhHHHHHHHHHhcCccccee-EEEeeeeeeecchhhhhccCCCCCCCceEEEEEccccchhhHHHHHHHHh
Q 036679          193 LCLDSINVDNQWLVKFIELLAKLNHCSNV-LNLECYAAAIIPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLL  271 (294)
Q Consensus       193 i~~~~~~~~~~~~~~~~~~l~~l~~l~~L-L~~~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL  271 (294)
                      ++......+. -...+...-.+..+++.+ |+-........-+.     ...-++||.+.+..  +..-.  ...+..+-
T Consensus       379 lshce~itD~-gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~-----l~~c~~Leri~l~~--~q~vt--k~~i~~~~  448 (483)
T KOG4341|consen  379 LSHCELITDE-GIRHLSSSSCSLEGLEVLELDNCPLITDATLEH-----LSICRNLERIELID--CQDVT--KEAISRFA  448 (483)
T ss_pred             hhhhhhhhhh-hhhhhhhccccccccceeeecCCCCchHHHHHH-----HhhCcccceeeeec--hhhhh--hhhhHHHH
Confidence            5311110010 000111111123333333 22111111222222     22235777766664  21111  12345567


Q ss_pred             hcCCCCCeeEEeeCCCCC
Q 036679          272 WISPHAETLSIKCNDCDH  289 (294)
Q Consensus       272 ~~~P~le~l~i~~~~~~~  289 (294)
                      ..+|+.++....+.--++
T Consensus       449 ~~lp~i~v~a~~a~~t~p  466 (483)
T KOG4341|consen  449 THLPNIKVHAYFAPVTPP  466 (483)
T ss_pred             hhCccceehhhccCCCCc
Confidence            778888777766643333

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.04  E-value=6.2e-11  Score=106.89  Aligned_cols=210  Identities=15%  Similarity=0.131  Sum_probs=117.9

Q ss_pred             HhcCCCCCEEEEEcCC--CCCeeccCCCCCccEEEccccC--Cccc-ccccCCcccEEEeeCCCCC--cccccccccccc
Q 036679           31 VAGCPLIERLKIIDCR--GLKSLEFLNLGKLSKFMVRNED--RLAR-VSICGPNVRLVDISSLHAP--CGINVALCKNLK  103 (294)
Q Consensus        31 ~~~~~~Le~L~L~~c~--~l~~l~~~~l~~L~~L~l~~c~--~l~~-~~~~~~~L~~L~l~~c~~~--~~~~~~~~~~L~  103 (294)
                      +..+|+|+.|+|..+.  -.+.+.+.++++|+.+.+..+.  .+++ ....+..+++|++..+...  ..-.+.++..|+
T Consensus       217 Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~  296 (873)
T KOG4194|consen  217 FKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLE  296 (873)
T ss_pred             hhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhh
Confidence            3445555555554442  1123344455555555555443  2222 1223455666666655421  112344566777


Q ss_pred             eEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccc----cccceEEeecccCceeee----ccCCCccEEEEc
Q 036679          104 ELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISS----PYLKKLLVRFCNKLYEFK----LDTPNLSVFDYE  175 (294)
Q Consensus       104 ~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~----~~L~~L~l~~c~~l~~~~----~~~p~L~~l~~~  175 (294)
                      .|+++++.|..-.+ ..-+-|++|+.|++++ +.++++.-++    .+|+.|.++... ++.+.    ....+|+.|+++
T Consensus       297 ~L~lS~NaI~rih~-d~WsftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr  373 (873)
T KOG4194|consen  297 QLDLSYNAIQRIHI-DSWSFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLR  373 (873)
T ss_pred             hhccchhhhheeec-chhhhcccceeEeccc-cccccCChhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCc
Confidence            77777776433111 1124588999999987 4566665444    578888887764 22222    234677888877


Q ss_pred             Ccee--------eeecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEEeeeeeeecchhhhhccCCCCCCC
Q 036679          176 GDMV--------SFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAIIPRELREILSSPLTYE  247 (294)
Q Consensus       176 g~~~--------~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~~~p~~~~~~~~~~f~~L  247 (294)
                      .+.+        ..+.+.++|+++++.-+.      ....-++-+++++.|+. |++..+.+.++..+.    ..++ +|
T Consensus       374 ~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq------lk~I~krAfsgl~~LE~-LdL~~NaiaSIq~nA----Fe~m-~L  441 (873)
T KOG4194|consen  374 SNELSWCIEDAAVAFNGLPSLRKLRLTGNQ------LKSIPKRAFSGLEALEH-LDLGDNAIASIQPNA----FEPM-EL  441 (873)
T ss_pred             CCeEEEEEecchhhhccchhhhheeecCce------eeecchhhhccCcccce-ecCCCCcceeecccc----cccc-hh
Confidence            6654        234567788888773222      11122445677888888 477777666665552    3344 89


Q ss_pred             ceEEEEEc
Q 036679          248 NHVCFIIN  255 (294)
Q Consensus       248 k~L~L~~~  255 (294)
                      |.|.+...
T Consensus       442 k~Lv~nSs  449 (873)
T KOG4194|consen  442 KELVMNSS  449 (873)
T ss_pred             hhhhhccc
Confidence            99988763

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=4e-11  Score=99.95  Aligned_cols=167  Identities=15%  Similarity=0.190  Sum_probs=119.8

Q ss_pred             CccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCe--eccCCCCCccEEEccccCCcccc-----cccCCcccEE
Q 036679           11 SLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKS--LEFLNLGKLSKFMVRNEDRLARV-----SICGPNVRLV   83 (294)
Q Consensus        11 ~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~--l~~~~l~~L~~L~l~~c~~l~~~-----~~~~~~L~~L   83 (294)
                      .|++|+|++..++...+..+.+.|.+|+.|++.+..-=..  ..++.-..|+.+++++|.++.+.     ...+.+|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            5889999998888888899999999999998887531111  11333468999999999877543     2357889999


Q ss_pred             EeeCCCCCcc----cccccccccceEEecccc--cChHHHHHHhcCCCCCcEEeecccccceeecc----cccccceEEe
Q 036679           84 DISSLHAPCG----INVALCKNLKELKLFKLS--ITNEWLCNQFSELPFLEYLEIFRCMKIRSIKI----SSPYLKKLLV  153 (294)
Q Consensus        84 ~l~~c~~~~~----~~~~~~~~L~~L~L~~~~--i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i----~~~~L~~L~l  153 (294)
                      ++++|....+    ....--++|+.|+++++.  +.+..+..+...||.|..||+++|..++.--+    ..+.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            9999973322    111233789999999874  55556778888999999999999988775211    1268999999


Q ss_pred             ecccCce---eeec-cCCCccEEEEcCc
Q 036679          154 RFCNKLY---EFKL-DTPNLSVFDYEGD  177 (294)
Q Consensus       154 ~~c~~l~---~~~~-~~p~L~~l~~~g~  177 (294)
                      +.|..+.   -+++ ..|.|.+|++.|+
T Consensus       346 sRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  346 SRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhcCCChHHeeeeccCcceEEEEeccc
Confidence            9998653   2333 3567777776665

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.98  E-value=3e-11  Score=109.85  Aligned_cols=44  Identities=16%  Similarity=0.025  Sum_probs=34.3

Q ss_pred             CCCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCC
Q 036679            1 DSPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCR   46 (294)
Q Consensus         1 ~~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~   46 (294)
                      |||.++.++..|..|+|+.|++.  ..+.-+..-.++-.|+|+++.
T Consensus        94 GiP~diF~l~dLt~lDLShNqL~--EvP~~LE~AKn~iVLNLS~N~  137 (1255)
T KOG0444|consen   94 GIPTDIFRLKDLTILDLSHNQLR--EVPTNLEYAKNSIVLNLSYNN  137 (1255)
T ss_pred             CCCchhcccccceeeecchhhhh--hcchhhhhhcCcEEEEcccCc
Confidence            58999999999999999999874  333334556778888888864

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=1.1e-10  Score=97.34  Aligned_cols=150  Identities=20%  Similarity=0.272  Sum_probs=112.7

Q ss_pred             CCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee----ccCCCCCccEEEccccCCcccc-----cccCC
Q 036679            8 TLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL----EFLNLGKLSKFMVRNEDRLARV-----SICGP   78 (294)
Q Consensus         8 ~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l----~~~~l~~L~~L~l~~c~~l~~~-----~~~~~   78 (294)
                      .|.+||.|+|.+.++.|.... -+..-.+|++|++++|.++..-    -+++|..|..|+++.|.-..+.     ....+
T Consensus       208 ~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise  286 (419)
T KOG2120|consen  208 QCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISE  286 (419)
T ss_pred             HHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhch
Confidence            467899999999999765444 4577799999999999987543    2467899999999999733322     22468


Q ss_pred             cccEEEeeCCCCC---cc--cccccccccceEEecccc-cChHHHHHHhcCCCCCcEEeeccccccee---eccc-cccc
Q 036679           79 NVRLVDISSLHAP---CG--INVALCKNLKELKLFKLS-ITNEWLCNQFSELPFLEYLEIFRCMKIRS---IKIS-SPYL  148 (294)
Q Consensus        79 ~L~~L~l~~c~~~---~~--~~~~~~~~L~~L~L~~~~-i~~~~l~~l~~~~~~L~~L~l~~c~~l~~---l~i~-~~~L  148 (294)
                      +|..|+++||.-.   ..  .-...||+|..|+|+++. +++. .-..+-.++.|++|.++.|..+.-   +... .|+|
T Consensus       287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl  365 (419)
T KOG2120|consen  287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSL  365 (419)
T ss_pred             hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch-HHHHHHhcchheeeehhhhcCCChHHeeeeccCcce
Confidence            8999999999621   11  224689999999999974 6664 444466799999999999987531   2222 3899


Q ss_pred             ceEEeecccCc
Q 036679          149 KKLLVRFCNKL  159 (294)
Q Consensus       149 ~~L~l~~c~~l  159 (294)
                      .+|++.+|-.-
T Consensus       366 ~yLdv~g~vsd  376 (419)
T KOG2120|consen  366 VYLDVFGCVSD  376 (419)
T ss_pred             EEEEeccccCc
Confidence            99999998644

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.94  E-value=6.6e-09  Score=90.94  Aligned_cols=249  Identities=14%  Similarity=0.026  Sum_probs=112.3

Q ss_pred             CCCccEEEeeecccChH---HHHHHHhcCCCCCEEEEEcCCCCC------ee--ccCCCCCccEEEccccCCcc---ccc
Q 036679            9 LSSLRELGLFKCAANDE---AIRDIVAGCPLIERLKIIDCRGLK------SL--EFLNLGKLSKFMVRNEDRLA---RVS   74 (294)
Q Consensus         9 l~~Lk~L~L~~~~~~~~---~l~~~~~~~~~Le~L~L~~c~~l~------~l--~~~~l~~L~~L~l~~c~~l~---~~~   74 (294)
                      +++|++|+++++.+++.   .+...+...+.+++|+++++.--.      .+  .+..+++|++|++++|..-.   ...
T Consensus        22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  101 (319)
T cd00116          22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL  101 (319)
T ss_pred             HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence            34466666666666543   233344555666666666543110      00  11234566666666554210   000


Q ss_pred             ccC---CcccEEEeeCCCCCcc------cccccc-cccceEEecccccChHH---HHHHhcCCCCCcEEeeccccccee-
Q 036679           75 ICG---PNVRLVDISSLHAPCG------INVALC-KNLKELKLFKLSITNEW---LCNQFSELPFLEYLEIFRCMKIRS-  140 (294)
Q Consensus        75 ~~~---~~L~~L~l~~c~~~~~------~~~~~~-~~L~~L~L~~~~i~~~~---l~~l~~~~~~L~~L~l~~c~~l~~-  140 (294)
                      ...   ++|+.|++++|.....      ..+..+ ++|+.|+++++.+++..   +...+..++.|+.|++++|. ++. 
T Consensus       102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~  180 (319)
T cd00116         102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDA  180 (319)
T ss_pred             HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchH
Confidence            011   3366666666543210      112233 55666666666555321   22334445566666666543 211 


Q ss_pred             ----ecc---cccccceEEeecccCce----ee---eccCCCccEEEEcCceeeeecCccccceEEEEEEEeccCh-hHH
Q 036679          141 ----IKI---SSPYLKKLLVRFCNKLY----EF---KLDTPNLSVFDYEGDMVSFSSNALALSETSLCLDSINVDN-QWL  205 (294)
Q Consensus       141 ----l~i---~~~~L~~L~l~~c~~l~----~~---~~~~p~L~~l~~~g~~~~~~~~~~~L~~~~i~~~~~~~~~-~~~  205 (294)
                          +..   ..++|++|++++|..-.    .+   .-..|+|+.++++++.+                     .. ...
T Consensus       181 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l---------------------~~~~~~  239 (319)
T cd00116         181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL---------------------TDAGAA  239 (319)
T ss_pred             HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC---------------------chHHHH
Confidence                100   01355556555553210    00   01233444444444321                     11 011


Q ss_pred             HHHHHHHhcCcccceeEEEeeeeee-----ecchhhhhccCCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCee
Q 036679          206 VKFIELLAKLNHCSNVLNLECYAAA-----IIPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETL  280 (294)
Q Consensus       206 ~~~~~~l~~l~~l~~LL~~~~~~~~-----~~p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l  280 (294)
                      .....+....+.++.| .+......     .+.+.     .+.+++|+++.+..|..... +...+..-+....++++++
T Consensus       240 ~l~~~~~~~~~~L~~L-~l~~n~i~~~~~~~l~~~-----~~~~~~L~~l~l~~N~l~~~-~~~~~~~~~~~~~~~~~~~  312 (319)
T cd00116         240 ALASALLSPNISLLTL-SLSCNDITDDGAKDLAEV-----LAEKESLLELDLRGNKFGEE-GAQLLAESLLEPGNELESL  312 (319)
T ss_pred             HHHHHHhccCCCceEE-EccCCCCCcHHHHHHHHH-----HhcCCCccEEECCCCCCcHH-HHHHHHHHHhhcCCchhhc
Confidence            1111122234677775 55433221     22222     44557899999987544222 2233333344444899998


Q ss_pred             EEeeCC
Q 036679          281 SIKCND  286 (294)
Q Consensus       281 ~i~~~~  286 (294)
                      .+..++
T Consensus       313 ~~~~~~  318 (319)
T cd00116         313 WVKDDS  318 (319)
T ss_pred             ccCCCC
Confidence            876654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.88  E-value=6.3e-09  Score=91.06  Aligned_cols=252  Identities=17%  Similarity=0.099  Sum_probs=146.8

Q ss_pred             cEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCC----CCee--ccCCCCCccEEEccccCCc------ccc---cccC
Q 036679           13 RELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRG----LKSL--EFLNLGKLSKFMVRNEDRL------ARV---SICG   77 (294)
Q Consensus        13 k~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~----l~~l--~~~~l~~L~~L~l~~c~~l------~~~---~~~~   77 (294)
                      +.|+|..+.++++....++...+.|++|++++|.-    ...+  .+...+.+++++++++..-      ..+   ....
T Consensus         1 ~~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (319)
T cd00116           1 LQLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG   80 (319)
T ss_pred             CccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence            35788888887766667778888899999999862    1111  1234567899988876421      111   1135


Q ss_pred             CcccEEEeeCCCCCc--ccccccc---cccceEEecccccChHHHH---HHhcCC-CCCcEEeecccccce----eec--
Q 036679           78 PNVRLVDISSLHAPC--GINVALC---KNLKELKLFKLSITNEWLC---NQFSEL-PFLEYLEIFRCMKIR----SIK--  142 (294)
Q Consensus        78 ~~L~~L~l~~c~~~~--~~~~~~~---~~L~~L~L~~~~i~~~~l~---~l~~~~-~~L~~L~l~~c~~l~----~l~--  142 (294)
                      ++|+.|++++|....  ...+..+   ++|++|++.++.+++....   ..+..+ ++|+.|++++|.--.    .+.  
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            789999999887431  1122222   4599999999888764433   334556 889999999875221    111  


Q ss_pred             c-cccccceEEeecccCce----eee---ccCCCccEEEEcCceeeeecCccccceEEEEEEEeccChhHHHHHHHHHhc
Q 036679          143 I-SSPYLKKLLVRFCNKLY----EFK---LDTPNLSVFDYEGDMVSFSSNALALSETSLCLDSINVDNQWLVKFIELLAK  214 (294)
Q Consensus       143 i-~~~~L~~L~l~~c~~l~----~~~---~~~p~L~~l~~~g~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~  214 (294)
                      + ..++|++|++.+|..-.    .+.   ...++|+.++++++..                     .......+...+..
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i---------------------~~~~~~~l~~~~~~  219 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL---------------------TDEGASALAETLAS  219 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc---------------------ChHHHHHHHHHhcc
Confidence            1 11478888887775321    111   1223555555554421                     11122234455666


Q ss_pred             CcccceeEEEeeeeeee-cchhhhhccCCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEeeCCCC
Q 036679          215 LNHCSNVLNLECYAAAI-IPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCNDCD  288 (294)
Q Consensus       215 l~~l~~LL~~~~~~~~~-~p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~~~~~~  288 (294)
                      +++|+.| .++.+.... ....+..........|++|.+..+...+. +... +...+...|+|+.+.+..++-+
T Consensus       220 ~~~L~~L-~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~-~~~~-l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         220 LKSLEVL-NLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDD-GAKD-LAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             cCCCCEE-ecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcH-HHHH-HHHHHhcCCCccEEECCCCCCc
Confidence            7788885 666543221 11122221122357999999997543222 2233 3445666699999999886544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.87  E-value=2.2e-10  Score=99.51  Aligned_cols=241  Identities=15%  Similarity=0.181  Sum_probs=150.9

Q ss_pred             CCCCCccEEEeeecc-cChHHHHHHHhcCCCCCEEEEEcCCCCCeec----cCCCCCccEEEccccCCc-----cccccc
Q 036679            7 VTLSSLRELGLFKCA-ANDEAIRDIVAGCPLIERLKIIDCRGLKSLE----FLNLGKLSKFMVRNEDRL-----ARVSIC   76 (294)
Q Consensus         7 ~~l~~Lk~L~L~~~~-~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~----~~~l~~L~~L~l~~c~~l-----~~~~~~   76 (294)
                      ..+|+++.|.+.+|. ++|..+..+...|++|+.|++..|..+....    ..+|++|+++++++|+.+     +.+..+
T Consensus       161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG  240 (483)
T KOG4341|consen  161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG  240 (483)
T ss_pred             hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence            457888888888884 6777778888888888888888887653221    236788888888888733     233334


Q ss_pred             CCcccEEEeeCCCC--------------------------Cccc----ccccccccceEEeccc-ccChHHHHHHhcCCC
Q 036679           77 GPNVRLVDISSLHA--------------------------PCGI----NVALCKNLKELKLFKL-SITNEWLCNQFSELP  125 (294)
Q Consensus        77 ~~~L~~L~l~~c~~--------------------------~~~~----~~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~  125 (294)
                      +..++.+..+||..                          ....    .-.+|..|+.+..+++ .+++..+..+..+|+
T Consensus       241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~  320 (483)
T KOG4341|consen  241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCH  320 (483)
T ss_pred             chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCC
Confidence            44555554555530                          0000    0134677888888886 577777888888999


Q ss_pred             CCcEEeecccccceeec-----ccccccceEEeecccCce-----eeeccCCCccEEEEcCcee---e---eecC-cccc
Q 036679          126 FLEYLEIFRCMKIRSIK-----ISSPYLKKLLVRFCNKLY-----EFKLDTPNLSVFDYEGDMV---S---FSSN-ALAL  188 (294)
Q Consensus       126 ~L~~L~l~~c~~l~~l~-----i~~~~L~~L~l~~c~~l~-----~~~~~~p~L~~l~~~g~~~---~---~~~~-~~~L  188 (294)
                      +|+.|.++.|..+++..     -.++.|+.+++..|....     .+..++|.|+.+.++.+..   .   .+.. .-++
T Consensus       321 ~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~  400 (483)
T KOG4341|consen  321 NLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSL  400 (483)
T ss_pred             ceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccc
Confidence            99999999998765532     234789999999987654     3457888999888774422   0   0000 0112


Q ss_pred             ceEEEEEEEeccChhHHHHHHHHHhcCccccee-E-EEeeeeeeecchhhhhccCCCCCCCceEEEEE
Q 036679          189 SETSLCLDSINVDNQWLVKFIELLAKLNHCSNV-L-NLECYAAAIIPRELREILSSPLTYENHVCFII  254 (294)
Q Consensus       189 ~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~L-L-~~~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~  254 (294)
                      ..+.+  -.++.........-+++..+++++.+ + .+.....+.+.+.     ...+++++...+..
T Consensus       401 ~~l~~--lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~-----~~~lp~i~v~a~~a  461 (483)
T KOG4341|consen  401 EGLEV--LELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRF-----ATHLPNIKVHAYFA  461 (483)
T ss_pred             cccce--eeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHH-----HhhCccceehhhcc
Confidence            22222  11222334455566788999999997 3 4444444444333     34456666666553

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.81  E-value=9.4e-09  Score=98.69  Aligned_cols=224  Identities=15%  Similarity=0.042  Sum_probs=108.3

Q ss_pred             CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCCcccccccCCccc
Q 036679            2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVSICGPNVR   81 (294)
Q Consensus         2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~   81 (294)
                      +|..+.  ++|+.|++.+|.++.  ++   ...++|++|+++++ .+..+.- ..++|+.|+++++. +..+.....+|+
T Consensus       216 LP~~l~--~~L~~L~L~~N~Lt~--LP---~lp~~Lk~LdLs~N-~LtsLP~-lp~sL~~L~Ls~N~-L~~Lp~lp~~L~  285 (788)
T PRK15387        216 LPDCLP--AHITTLVIPDNNLTS--LP---ALPPELRTLEVSGN-QLTSLPV-LPPGLLELSIFSNP-LTHLPALPSGLC  285 (788)
T ss_pred             CCcchh--cCCCEEEccCCcCCC--CC---CCCCCCcEEEecCC-ccCcccC-cccccceeeccCCc-hhhhhhchhhcC
Confidence            455443  478888888887742  22   23578888888876 4444331 23466666666653 222211223455


Q ss_pred             EEEeeCCCCCcccccccccccceEEecccccChHHHHHHh----------------cC-CCCCcEEeecccccceeeccc
Q 036679           82 LVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQF----------------SE-LPFLEYLEIFRCMKIRSIKIS  144 (294)
Q Consensus        82 ~L~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~----------------~~-~~~L~~L~l~~c~~l~~l~i~  144 (294)
                      .|++++|....-.  ...++|+.|++++|.++.  ++.+.                .. .++|+.|++++ +.++.++..
T Consensus       286 ~L~Ls~N~Lt~LP--~~p~~L~~LdLS~N~L~~--Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~-N~Ls~LP~l  360 (788)
T PRK15387        286 KLWIFGNQLTSLP--VLPPGLQELSVSDNQLAS--LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSD-NQLASLPTL  360 (788)
T ss_pred             EEECcCCcccccc--ccccccceeECCCCcccc--CCCCcccccccccccCccccccccccccceEecCC-CccCCCCCC
Confidence            5555555421100  112445555555554432  11100                01 12566666655 234443322


Q ss_pred             ccccceEEeecccCceeeeccCCCccEEEEcCceeeee-cCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEE
Q 036679          145 SPYLKKLLVRFCNKLYEFKLDTPNLSVFDYEGDMVSFS-SNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLN  223 (294)
Q Consensus       145 ~~~L~~L~l~~c~~l~~~~~~~p~L~~l~~~g~~~~~~-~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~  223 (294)
                      .++|+.|+++++. ++.++-..++|+.|+++++.+... ...++|+.+.+..+.+          ..++....+++. |+
T Consensus       361 p~~L~~L~Ls~N~-L~~LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~L----------ssIP~l~~~L~~-L~  428 (788)
T PRK15387        361 PSELYKLWAYNNR-LTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRL----------TSLPMLPSGLLS-LS  428 (788)
T ss_pred             Ccccceehhhccc-cccCcccccccceEEecCCcccCCCCcccCCCEEEccCCcC----------CCCCcchhhhhh-hh
Confidence            3455666555443 333333334666666666654211 1223455554421111          111112234444 45


Q ss_pred             EeeeeeeecchhhhhccCCCCCCCceEEEEEccc
Q 036679          224 LECYAAAIIPRELREILSSPLTYENHVCFIINSE  257 (294)
Q Consensus       224 ~~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~~~  257 (294)
                      ++.+....+|+.     ...+.+|+.|.|+.|..
T Consensus       429 Ls~NqLt~LP~s-----l~~L~~L~~LdLs~N~L  457 (788)
T PRK15387        429 VYRNQLTRLPES-----LIHLSSETTVNLEGNPL  457 (788)
T ss_pred             hccCcccccChH-----HhhccCCCeEECCCCCC
Confidence            555555667765     34567888888877533

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=2e-09  Score=94.08  Aligned_cols=171  Identities=18%  Similarity=0.165  Sum_probs=114.5

Q ss_pred             CCCCCCccEEEeeecccCh-HHHHHHHhcCCCCCEEEEEcCCCC---CeeccCCCCCccEEEccccC-C---cccccccC
Q 036679            6 NVTLSSLRELGLFKCAAND-EAIRDIVAGCPLIERLKIIDCRGL---KSLEFLNLGKLSKFMVRNED-R---LARVSICG   77 (294)
Q Consensus         6 ~~~l~~Lk~L~L~~~~~~~-~~l~~~~~~~~~Le~L~L~~c~~l---~~l~~~~l~~L~~L~l~~c~-~---l~~~~~~~   77 (294)
                      .-.|++++.|+|+.|-++. ..+.+++..+|+||.|+++.+.-.   ....-..+++|+.|.+++|. .   +..+...+
T Consensus       142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f  221 (505)
T KOG3207|consen  142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF  221 (505)
T ss_pred             hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence            3458999999999997765 677889999999999999987521   11111135789999999995 2   22234468


Q ss_pred             CcccEEEeeCCC-C-CcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc----------c
Q 036679           78 PNVRLVDISSLH-A-PCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----------S  145 (294)
Q Consensus        78 ~~L~~L~l~~c~-~-~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----------~  145 (294)
                      |+|+.|.+.++. . .......-+..|++|+|+++.+-+.......+.+|.|+.|+++.|. +.++...          .
T Consensus       222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f  300 (505)
T KOG3207|consen  222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTF  300 (505)
T ss_pred             CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhccc
Confidence            999999998884 1 1112233456799999999986654444557789999999998753 4444322          1


Q ss_pred             cccceEEeecccC--ceeee--ccCCCccEEEEcCc
Q 036679          146 PYLKKLLVRFCNK--LYEFK--LDTPNLSVFDYEGD  177 (294)
Q Consensus       146 ~~L~~L~l~~c~~--l~~~~--~~~p~L~~l~~~g~  177 (294)
                      ++|++|++...+.  ...+.  ...++|+.+.+.+.
T Consensus       301 ~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n  336 (505)
T KOG3207|consen  301 PKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN  336 (505)
T ss_pred             ccceeeecccCccccccccchhhccchhhhhhcccc
Confidence            6899999987764  22221  12456666665544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.61  E-value=5.1e-08  Score=93.94  Aligned_cols=18  Identities=11%  Similarity=0.187  Sum_probs=7.9

Q ss_pred             HHHhhcCCCCCeeEEeeC
Q 036679          268 DSLLWISPHAETLSIKCN  285 (294)
Q Consensus       268 ~~lL~~~P~le~l~i~~~  285 (294)
                      ..++..+|.++++.+..+
T Consensus       408 ~~~~~~~~~l~~L~L~~N  425 (754)
T PRK15370        408 PHFRGEGPQPTRIIVEYN  425 (754)
T ss_pred             HHHhhcCCCccEEEeeCC
Confidence            333444444444444443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.59  E-value=9.6e-08  Score=91.86  Aligned_cols=153  Identities=20%  Similarity=0.130  Sum_probs=96.3

Q ss_pred             CccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCCcccccccCCcccEEEeeCCCC
Q 036679           11 SLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVSICGPNVRLVDISSLHA   90 (294)
Q Consensus        11 ~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~c~~   90 (294)
                      .-+.|+++++.++  .++.-+  .++|+.|++.++ +++.+. ...++|++|+++++ .+..+....++|+.|++.+|.+
T Consensus       202 ~~~~LdLs~~~Lt--sLP~~l--~~~L~~L~L~~N-~Lt~LP-~lp~~Lk~LdLs~N-~LtsLP~lp~sL~~L~Ls~N~L  274 (788)
T PRK15387        202 GNAVLNVGESGLT--TLPDCL--PAHITTLVIPDN-NLTSLP-ALPPELRTLEVSGN-QLTSLPVLPPGLLELSIFSNPL  274 (788)
T ss_pred             CCcEEEcCCCCCC--cCCcch--hcCCCEEEccCC-cCCCCC-CCCCCCcEEEecCC-ccCcccCcccccceeeccCCch
Confidence            3456788888764  232212  147888888875 455444 23478999999887 4444433457888998888863


Q ss_pred             CcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccccccceEEeecccCceeeeccCCCcc
Q 036679           91 PCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISSPYLKKLLVRFCNKLYEFKLDTPNLS  170 (294)
Q Consensus        91 ~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~~~L~~L~l~~c~~l~~~~~~~p~L~  170 (294)
                      ....  ....+|+.|++.+|.++.  ++.   ..++|+.|+++++ .++.++....+|+.|++++|. ++.++.-.++|+
T Consensus       275 ~~Lp--~lp~~L~~L~Ls~N~Lt~--LP~---~p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~-L~~LP~lp~~Lq  345 (788)
T PRK15387        275 THLP--ALPSGLCKLWIFGNQLTS--LPV---LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQ-LTSLPTLPSGLQ  345 (788)
T ss_pred             hhhh--hchhhcCEEECcCCcccc--ccc---cccccceeECCCC-ccccCCCCcccccccccccCc-cccccccccccc
Confidence            2111  123578889998887764  332   3478999999885 455554333567778777764 334443234677


Q ss_pred             EEEEcCcee
Q 036679          171 VFDYEGDMV  179 (294)
Q Consensus       171 ~l~~~g~~~  179 (294)
                      .|+++++.+
T Consensus       346 ~LdLS~N~L  354 (788)
T PRK15387        346 ELSVSDNQL  354 (788)
T ss_pred             eEecCCCcc
Confidence            888777655

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.59  E-value=5.3e-08  Score=77.21  Aligned_cols=126  Identities=18%  Similarity=0.152  Sum_probs=42.3

Q ss_pred             CCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccC--Cccc-ccccCCcccE
Q 036679            7 VTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNED--RLAR-VSICGPNVRL   82 (294)
Q Consensus         7 ~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~--~l~~-~~~~~~~L~~   82 (294)
                      .+.-+++.|+|.++.++  .+..+-..+.+|+.|++++|. ++.+ .+..+++|++|+++++.  .+.. +...+|+|+.
T Consensus        16 ~n~~~~~~L~L~~n~I~--~Ie~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQIS--TIENLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             ccccccccccccccccc--cccchhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            34556788888888773  333333356788888888874 3222 13456778888887764  2221 1124677888


Q ss_pred             EEeeCCCCCcc---cccccccccceEEecccccChHH--HHHHhcCCCCCcEEeeccc
Q 036679           83 VDISSLHAPCG---INVALCKNLKELKLFKLSITNEW--LCNQFSELPFLEYLEIFRC  135 (294)
Q Consensus        83 L~l~~c~~~~~---~~~~~~~~L~~L~L~~~~i~~~~--l~~l~~~~~~L~~L~l~~c  135 (294)
                      |.++++.+...   ..+..+++|+.|++.+|.+++..  -..++..+|+|+.||-...
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence            87777763211   23456777777777777765421  2334556777777765443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.59  E-value=3.5e-10  Score=103.06  Aligned_cols=42  Identities=14%  Similarity=0.214  Sum_probs=25.2

Q ss_pred             CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcC
Q 036679            2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDC   45 (294)
Q Consensus         2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c   45 (294)
                      +|.-+..+.+|+.|+++.|++  ..+..-++.+|.|+.+.+..+
T Consensus        47 vPeEL~~lqkLEHLs~~HN~L--~~vhGELs~Lp~LRsv~~R~N   88 (1255)
T KOG0444|consen   47 VPEELSRLQKLEHLSMAHNQL--ISVHGELSDLPRLRSVIVRDN   88 (1255)
T ss_pred             ChHHHHHHhhhhhhhhhhhhh--HhhhhhhccchhhHHHhhhcc
Confidence            566666677777777777765  233333455566666555544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.38  E-value=2.9e-07  Score=88.79  Aligned_cols=221  Identities=14%  Similarity=0.144  Sum_probs=115.1

Q ss_pred             CCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCCcccccc-cCCcccEEEeeCC
Q 036679           10 SSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVSI-CGPNVRLVDISSL   88 (294)
Q Consensus        10 ~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~l~~~~~-~~~~L~~L~l~~c   88 (294)
                      ++|+.|+|++|.++.  ++..+  +++|+.|++++| ++..+...-.++|+.|++++|. +..+.. ...+|+.|+++++
T Consensus       199 ~~L~~L~Ls~N~Lts--LP~~l--~~nL~~L~Ls~N-~LtsLP~~l~~~L~~L~Ls~N~-L~~LP~~l~s~L~~L~Ls~N  272 (754)
T PRK15370        199 EQITTLILDNNELKS--LPENL--QGNIKTLYANSN-QLTSIPATLPDTIQEMELSINR-ITELPERLPSALQSLDLFHN  272 (754)
T ss_pred             cCCcEEEecCCCCCc--CChhh--ccCCCEEECCCC-ccccCChhhhccccEEECcCCc-cCcCChhHhCCCCEEECcCC
Confidence            468888888887642  22212  257888888776 3444432223467788887764 222211 1246788888776


Q ss_pred             CCCc-ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc-ccccceEEeecccCceeeecc-
Q 036679           89 HAPC-GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS-SPYLKKLLVRFCNKLYEFKLD-  165 (294)
Q Consensus        89 ~~~~-~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~-~~~L~~L~l~~c~~l~~~~~~-  165 (294)
                      .+.. +..  -+++|+.|++++|.++.  ++..+  .+.|+.|+++++ .++.++.. .++|+.|++.+|. ++.++.. 
T Consensus       273 ~L~~LP~~--l~~sL~~L~Ls~N~Lt~--LP~~l--p~sL~~L~Ls~N-~Lt~LP~~l~~sL~~L~Ls~N~-Lt~LP~~l  344 (754)
T PRK15370        273 KISCLPEN--LPEELRYLSVYDNSIRT--LPAHL--PSGITHLNVQSN-SLTALPETLPPGLKTLEAGENA-LTSLPASL  344 (754)
T ss_pred             ccCccccc--cCCCCcEEECCCCcccc--Ccccc--hhhHHHHHhcCC-ccccCCccccccceeccccCCc-cccCChhh
Confidence            5321 111  22578888888776653  22111  135667777663 34443322 2577777777765 3334321 


Q ss_pred             CCCccEEEEcCceeeee--cCccccceEEEEEEEeccChhHHHHHHHHHhcC-cccceeEEEeeeeeeecchhhhhccCC
Q 036679          166 TPNLSVFDYEGDMVSFS--SNALALSETSLCLDSINVDNQWLVKFIELLAKL-NHCSNVLNLECYAAAIIPRELREILSS  242 (294)
Q Consensus       166 ~p~L~~l~~~g~~~~~~--~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l-~~l~~LL~~~~~~~~~~p~~~~~~~~~  242 (294)
                      .++|+.|+++++....+  ..+++|+.+.+.-+.+          ..++..+ ..++. |.++.+....+|+.+... ..
T Consensus       345 ~~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~L----------t~LP~~l~~sL~~-LdLs~N~L~~LP~sl~~~-~~  412 (754)
T PRK15370        345 PPELQVLDVSKNQITVLPETLPPTITTLDVSRNAL----------TNLPENLPAALQI-MQASRNNLVRLPESLPHF-RG  412 (754)
T ss_pred             cCcccEEECCCCCCCcCChhhcCCcCEEECCCCcC----------CCCCHhHHHHHHH-HhhccCCcccCchhHHHH-hh
Confidence            25777777777654211  1124566665521111          1111111 23455 355555555666553221 22


Q ss_pred             CCCCCceEEEEEcc
Q 036679          243 PLTYENHVCFIINS  256 (294)
Q Consensus       243 ~f~~Lk~L~L~~~~  256 (294)
                      ..+++..|.+..|.
T Consensus       413 ~~~~l~~L~L~~Np  426 (754)
T PRK15370        413 EGPQPTRIIVEYNP  426 (754)
T ss_pred             cCCCccEEEeeCCC
Confidence            34567778777653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=5.3e-08  Score=85.38  Aligned_cols=103  Identities=18%  Similarity=0.060  Sum_probs=59.0

Q ss_pred             CCcccEEEeeCCCCCcc---cccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccc---cccce
Q 036679           77 GPNVRLVDISSLHAPCG---INVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISS---PYLKK  150 (294)
Q Consensus        77 ~~~L~~L~l~~c~~~~~---~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~---~~L~~  150 (294)
                      .|+|+.|.++.+.+..+   ..-..+++|+.|.+.+|.++..++..++..||+|+.|.+.+...+..-..+.   ..|+.
T Consensus       171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~  250 (505)
T KOG3207|consen  171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE  250 (505)
T ss_pred             cccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence            45555555555542211   1112456777777777777766677777778888888877654332211111   46777


Q ss_pred             EEeecccCcee----eeccCCCccEEEEcCcee
Q 036679          151 LLVRFCNKLYE----FKLDTPNLSVFDYEGDMV  179 (294)
Q Consensus       151 L~l~~c~~l~~----~~~~~p~L~~l~~~g~~~  179 (294)
                      |++++...+..    .....|+|+.+.++.+++
T Consensus       251 LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi  283 (505)
T KOG3207|consen  251 LDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGI  283 (505)
T ss_pred             ccccCCcccccccccccccccchhhhhccccCc
Confidence            77777665431    123456666666655544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.27  E-value=5e-07  Score=77.28  Aligned_cols=101  Identities=21%  Similarity=0.291  Sum_probs=47.8

Q ss_pred             CcccEEEeeCCCCCc------ccccccccccceEEecccccChHHH---HHHhcCCCCCcEEeeccccccee---ecc--
Q 036679           78 PNVRLVDISSLHAPC------GINVALCKNLKELKLFKLSITNEWL---CNQFSELPFLEYLEIFRCMKIRS---IKI--  143 (294)
Q Consensus        78 ~~L~~L~l~~c~~~~------~~~~~~~~~L~~L~L~~~~i~~~~l---~~l~~~~~~L~~L~l~~c~~l~~---l~i--  143 (294)
                      +.|+.+....+.+-.      ...+..++.|+.+.+..+.|..+++   ...+..|++|+.|+|.+.. ++.   ..+  
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~Lak  235 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAK  235 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHH
Confidence            455555555554211      0123445566666666665544332   2334456666666666532 111   001  


Q ss_pred             --c-ccccceEEeecccCce--------eeeccCCCccEEEEcCcee
Q 036679          144 --S-SPYLKKLLVRFCNKLY--------EFKLDTPNLSVFDYEGDMV  179 (294)
Q Consensus       144 --~-~~~L~~L~l~~c~~l~--------~~~~~~p~L~~l~~~g~~~  179 (294)
                        + .++|+.|++.+|-.-.        .+.-.+|+|+.+.+.|+.+
T Consensus       236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI  282 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI  282 (382)
T ss_pred             HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence              1 1456666666663211        1112366777777666643

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.21  E-value=9.6e-07  Score=75.59  Aligned_cols=38  Identities=26%  Similarity=0.273  Sum_probs=21.6

Q ss_pred             cccccceEEecccccChH---HHHHHhcCCCCCcEEeeccc
Q 036679           98 LCKNLKELKLFKLSITNE---WLCNQFSELPFLEYLEIFRC  135 (294)
Q Consensus        98 ~~~~L~~L~L~~~~i~~~---~l~~l~~~~~~L~~L~l~~c  135 (294)
                      +||.|++++|++|.+...   .+..++++|..|+.|.+.+|
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~  130 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC  130 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC
Confidence            445566666666554432   24455566666666666665

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.15  E-value=6.4e-07  Score=85.34  Aligned_cols=229  Identities=18%  Similarity=0.136  Sum_probs=117.7

Q ss_pred             CCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec--cCCCCCccEEEccccCC-cccc-c----
Q 036679            3 PTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE--FLNLGKLSKFMVRNEDR-LARV-S----   74 (294)
Q Consensus         3 p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~--~~~l~~L~~L~l~~c~~-l~~~-~----   74 (294)
                      |..+-.+++|+.|.++.+.+  ...+.-++++.+|++|.|.... +..+.  ++.+.+|+.|+++.+.. ..+. .    
T Consensus        61 p~~it~l~~L~~ln~s~n~i--~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt  137 (1081)
T KOG0618|consen   61 PIQITLLSHLRQLNLSRNYI--RSVPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLT  137 (1081)
T ss_pred             CchhhhHHHHhhcccchhhH--hhCchhhhhhhcchhheeccch-hhcCchhHHhhhcccccccchhccCCCchhHHhhh
Confidence            44455566777777777755  3334456667777777776542 33322  33445666666665541 1100 0    


Q ss_pred             ---------------ccCCcccEEEeeCCCCC--cccccccccccc-eEEecccccChHHHHHHhcCCCCCcEEeecccc
Q 036679           75 ---------------ICGPNVRLVDISSLHAP--CGINVALCKNLK-ELKLFKLSITNEWLCNQFSELPFLEYLEIFRCM  136 (294)
Q Consensus        75 ---------------~~~~~L~~L~l~~c~~~--~~~~~~~~~~L~-~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~  136 (294)
                                     .....++.+++..+...  ...++   .+++ .|+|.++.++..    .++.++.|+.+... +.
T Consensus       138 ~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i---~~l~~~ldLr~N~~~~~----dls~~~~l~~l~c~-rn  209 (1081)
T KOG0618|consen  138 AEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDI---YNLTHQLDLRYNEMEVL----DLSNLANLEVLHCE-RN  209 (1081)
T ss_pred             HHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcch---hhhheeeecccchhhhh----hhhhccchhhhhhh-hc
Confidence                           01112333333333211  11222   2344 488888876522    24568888888755 36


Q ss_pred             cceeecccccccceEEeecccCceeeeccC-CCccEEEEcCceeee----ecCccccceEEEEEEEeccChhHHHHHHHH
Q 036679          137 KIRSIKISSPYLKKLLVRFCNKLYEFKLDT-PNLSVFDYEGDMVSF----SSNALALSETSLCLDSINVDNQWLVKFIEL  211 (294)
Q Consensus       137 ~l~~l~i~~~~L~~L~l~~c~~l~~~~~~~-p~L~~l~~~g~~~~~----~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~  211 (294)
                      .+..+.+..++|+.|+.+.|+..+...-.. .+|++++++......    ...+.+++.+.+..+.      + ..+..=
T Consensus       210 ~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~------l-~~lp~r  282 (1081)
T KOG0618|consen  210 QLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNR------L-VALPLR  282 (1081)
T ss_pred             ccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchh------H-HhhHHH
Confidence            677888888999999999998653222222 367777776543311    1234455555542111      1 111111


Q ss_pred             HhcCcccceeEEEeeeeeeecchhhhhccCCCCCCCceEEEEEc
Q 036679          212 LAKLNHCSNVLNLECYAAAIIPRELREILSSPLTYENHVCFIIN  255 (294)
Q Consensus       212 l~~l~~l~~LL~~~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~  255 (294)
                      +...+.|+. +.+..++.+-+|+.     ..++..|++|.|..|
T Consensus       283 i~~~~~L~~-l~~~~nel~yip~~-----le~~~sL~tLdL~~N  320 (1081)
T KOG0618|consen  283 ISRITSLVS-LSAAYNELEYIPPF-----LEGLKSLRTLDLQSN  320 (1081)
T ss_pred             HhhhhhHHH-HHhhhhhhhhCCCc-----ccccceeeeeeehhc
Confidence            122233333 34444444455544     344566666666543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.11  E-value=2e-06  Score=68.29  Aligned_cols=101  Identities=22%  Similarity=0.217  Sum_probs=22.1

Q ss_pred             cCCCCCEEEEEcCC--CCCeeccCCCCCccEEEccccC--CcccccccCCcccEEEeeCCCCCcc-ccc-ccccccceEE
Q 036679           33 GCPLIERLKIIDCR--GLKSLEFLNLGKLSKFMVRNED--RLARVSICGPNVRLVDISSLHAPCG-INV-ALCKNLKELK  106 (294)
Q Consensus        33 ~~~~Le~L~L~~c~--~l~~l~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~~c~~~~~-~~~-~~~~~L~~L~  106 (294)
                      ++..+++|+|.++.  .++.+. ..+.+|+.|++++|.  .++.+. ..++|+.|+++++..... ..+ ..+|+|++|+
T Consensus        17 n~~~~~~L~L~~n~I~~Ie~L~-~~l~~L~~L~Ls~N~I~~l~~l~-~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIENLG-ATLDKLEVLDLSNNQITKLEGLP-GLPRLKTLDLSNNRISSISEGLDKNLPNLQELY   94 (175)
T ss_dssp             -------------------S---TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred             cccccccccccccccccccchh-hhhcCCCEEECCCCCCccccCcc-ChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence            34456777776653  222222 124566666666653  222211 234555555555542211 111 2345555555


Q ss_pred             ecccccChH-HHHHHhcCCCCCcEEeecccc
Q 036679          107 LFKLSITNE-WLCNQFSELPFLEYLEIFRCM  136 (294)
Q Consensus       107 L~~~~i~~~-~l~~l~~~~~~L~~L~l~~c~  136 (294)
                      ++++.+.+- .+. -++.+|+|+.|++.+.+
T Consensus        95 L~~N~I~~l~~l~-~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   95 LSNNKISDLNELE-PLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             -TTS---SCCCCG-GGGG-TT--EEE-TT-G
T ss_pred             CcCCcCCChHHhH-HHHcCCCcceeeccCCc
Confidence            555554331 111 13345555555555433

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.09  E-value=6e-07  Score=75.55  Aligned_cols=126  Identities=18%  Similarity=0.114  Sum_probs=85.7

Q ss_pred             CCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccC--CcccccccCCcccEEEee
Q 036679            9 LSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNED--RLARVSICGPNVRLVDIS   86 (294)
Q Consensus         9 l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~   86 (294)
                      ...|..|+|++|.+  ..+.+.+.-.|.++.|+++++.-...-++..+++|+.|+++++.  .+.......-++++|.++
T Consensus       283 Wq~LtelDLS~N~I--~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  283 WQELTELDLSGNLI--TQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             Hhhhhhccccccch--hhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence            46788999999977  45666677789999999999864433345567889999988764  222222334567778777


Q ss_pred             CCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccc
Q 036679           87 SLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCM  136 (294)
Q Consensus        87 ~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~  136 (294)
                      ++....-..++.+-+|..|++.+++|..-+-...+++.|.||.+.+.+.+
T Consensus       361 ~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  361 QNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            77533223445566788888888877653333446778888888777654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.90  E-value=1.7e-06  Score=80.00  Aligned_cols=114  Identities=20%  Similarity=0.311  Sum_probs=62.8

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCCCCeec----cCCCCCccEEEcccc-CCc-------ccccccCCcccEEEeeCCCCCc
Q 036679           25 EAIRDIVAGCPLIERLKIIDCRGLKSLE----FLNLGKLSKFMVRNE-DRL-------ARVSICGPNVRLVDISSLHAPC   92 (294)
Q Consensus        25 ~~l~~~~~~~~~Le~L~L~~c~~l~~l~----~~~l~~L~~L~l~~c-~~l-------~~~~~~~~~L~~L~l~~c~~~~   92 (294)
                      .....+...+|.|+.|.+.+|..+....    ...++.|+.|++++| ...       ..+...+++|+.+++++|....
T Consensus       178 ~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is  257 (482)
T KOG1947|consen  178 KILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT  257 (482)
T ss_pred             HHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC
Confidence            4444455556666666666665543211    123466666666652 111       0112234666666666665211


Q ss_pred             c----cccccccccceEEecccc-cChHHHHHHhcCCCCCcEEeecccccc
Q 036679           93 G----INVALCKNLKELKLFKLS-ITNEWLCNQFSELPFLEYLEIFRCMKI  138 (294)
Q Consensus        93 ~----~~~~~~~~L~~L~L~~~~-i~~~~l~~l~~~~~~L~~L~l~~c~~l  138 (294)
                      .    .....|++|++|.+..+. ++++++..+...|+.|+.|++++|..+
T Consensus       258 d~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  258 DIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             chhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            1    112346777777766665 677677777777777777777776655

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.87  E-value=1e-06  Score=84.06  Aligned_cols=129  Identities=18%  Similarity=0.162  Sum_probs=92.8

Q ss_pred             CCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccC--CcccccccCCcc
Q 036679            6 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNED--RLARVSICGPNV   80 (294)
Q Consensus         6 ~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L   80 (294)
                      ...++.|+.|++.+|.++|+.++. +.++++|+.|+|+++. +..+   .+.+++.|++|+++++.  .+......++.|
T Consensus       355 e~~~~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L  432 (1081)
T KOG0618|consen  355 ENNHAALQELYLANNHLTDSCFPV-LVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRL  432 (1081)
T ss_pred             chhhHHHHHHHHhcCcccccchhh-hccccceeeeeecccc-cccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhh
Confidence            345778899999999999888775 5778999999999983 2222   23456778888888874  232223356778


Q ss_pred             cEEEeeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeeccccc
Q 036679           81 RLVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMK  137 (294)
Q Consensus        81 ~~L~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~  137 (294)
                      ++|...++.......+...+.|+.++++.++++...+++.... |.|++|++++...
T Consensus       433 ~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  433 HTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR  488 (1081)
T ss_pred             HHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence            8887777763322255677889999999998877666665443 8999999998664

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.83  E-value=5.4e-06  Score=76.60  Aligned_cols=166  Identities=22%  Similarity=0.275  Sum_probs=95.2

Q ss_pred             CCCCCccEEEeeecc-cChHHHHHHHhcCCCCCEEEEEcCCCCCeec----cCCCCCccEEEccccCCccc-----cccc
Q 036679            7 VTLSSLRELGLFKCA-ANDEAIRDIVAGCPLIERLKIIDCRGLKSLE----FLNLGKLSKFMVRNEDRLAR-----VSIC   76 (294)
Q Consensus         7 ~~l~~Lk~L~L~~~~-~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~----~~~l~~L~~L~l~~c~~l~~-----~~~~   76 (294)
                      ..+++|+.|+++.+. ++|.++..+...||+|++|.+.+|..+....    ...++.|++|+++.|..+..     +...
T Consensus       240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~  319 (482)
T KOG1947|consen  240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN  319 (482)
T ss_pred             hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh
Confidence            346888889998887 7888888888889999999988887643211    13578899999988875422     2234


Q ss_pred             CCcccEEEeeCCCC--------------Cc--c---cccccccccceEEecccccChHHHHHHhcCCCCCcEEeeccccc
Q 036679           77 GPNVRLVDISSLHA--------------PC--G---INVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMK  137 (294)
Q Consensus        77 ~~~L~~L~l~~c~~--------------~~--~---~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~  137 (294)
                      +++++.+.+..+..              ..  .   ..+..|++++.+.+..+..++......+.+|+.|+ ..+..+..
T Consensus       320 c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~~~  398 (482)
T KOG1947|consen  320 CPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELRLC  398 (482)
T ss_pred             CcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHHhc
Confidence            66666655433320              00  0   12345566666666655544433334455555552 22111110


Q ss_pred             ceeecccccccceEEeecccCceeeecc-----CCCccEEEEcCcee
Q 036679          138 IRSIKISSPYLKKLLVRFCNKLYEFKLD-----TPNLSVFDYEGDMV  179 (294)
Q Consensus       138 l~~l~i~~~~L~~L~l~~c~~l~~~~~~-----~p~L~~l~~~g~~~  179 (294)
                            ....++.|.+..|...+.-.+.     +.++..+.+.|+..
T Consensus       399 ------~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  399 ------RSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             ------cCCccceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence                  0112777888888765533221     44555666665543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.83  E-value=2e-05  Score=75.64  Aligned_cols=127  Identities=21%  Similarity=0.249  Sum_probs=90.0

Q ss_pred             CCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec-cCCCCCccEEEccccC-----CcccccccCCcc
Q 036679            7 VTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE-FLNLGKLSKFMVRNED-----RLARVSICGPNV   80 (294)
Q Consensus         7 ~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~-~~~l~~L~~L~l~~c~-----~l~~~~~~~~~L   80 (294)
                      ..||+|++|.+.+..+..+.+..+..++|+|..||+++++ +..+. ++.+++|+.|.+.+-.     .+.. -+...+|
T Consensus       145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L~mrnLe~e~~~~l~~-LF~L~~L  222 (699)
T KOG3665|consen  145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVLSMRNLEFESYQDLID-LFNLKKL  222 (699)
T ss_pred             hhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHHhccCCCCCchhhHHH-HhcccCC
Confidence            4589999999999888777788899999999999999985 33222 3456677776665433     1111 2356789


Q ss_pred             cEEEeeCCCCC-cc-------cccccccccceEEecccccChHHHHHHhcCCCCCcEEeeccc
Q 036679           81 RLVDISSLHAP-CG-------INVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRC  135 (294)
Q Consensus        81 ~~L~l~~c~~~-~~-------~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c  135 (294)
                      +.|+++..... ..       .....+|+|+.|+.+++.++++.+..++..-|+|+.+..-+|
T Consensus       223 ~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~~  285 (699)
T KOG3665|consen  223 RVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALDC  285 (699)
T ss_pred             CeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhhh
Confidence            99999876421 11       112357899999999998888877777777778777765543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.73  E-value=8.9e-07  Score=68.74  Aligned_cols=163  Identities=18%  Similarity=0.154  Sum_probs=98.1

Q ss_pred             CCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee--ccCCCCCccEEEccccC-Ccccccc-cCCcc
Q 036679            5 RNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL--EFLNLGKLSKFMVRNED-RLARVSI-CGPNV   80 (294)
Q Consensus         5 ~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l--~~~~l~~L~~L~l~~c~-~l~~~~~-~~~~L   80 (294)
                      ++..+.+...|.|+.++++.  ++.-+....+||.|+++++. ++.+  .++++++|+.|+++.++ ..-+-.+ ..|-|
T Consensus        28 gLf~~s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~l  104 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPAL  104 (264)
T ss_pred             cccchhhhhhhhcccCceee--cCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCccccCCCchh
Confidence            34566777888888887642  22225566778888887753 3333  35677888888887654 1111111 35778


Q ss_pred             cEEEeeCCCCCc---ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccc---cccceEEee
Q 036679           81 RLVDISSLHAPC---GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISS---PYLKKLLVR  154 (294)
Q Consensus        81 ~~L~l~~c~~~~---~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~---~~L~~L~l~  154 (294)
                      +.|+++++...-   +-.+-.+..|+.|++.++.+.-  ++.-+++..+|+.|.+.+..-+ +++-..   .+|+.|.|.
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~--lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiq  181 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI--LPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQ  181 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcCCCccc--CChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcc
Confidence            888888776321   2234455667778888876532  4444667888888888874433 333222   578888887


Q ss_pred             cccCceeeeccCCCccEEEEcCc
Q 036679          155 FCNKLYEFKLDTPNLSVFDYEGD  177 (294)
Q Consensus       155 ~c~~l~~~~~~~p~L~~l~~~g~  177 (294)
                      +.. ++.   --|.+-.+++-|.
T Consensus       182 gnr-l~v---lppel~~l~l~~~  200 (264)
T KOG0617|consen  182 GNR-LTV---LPPELANLDLVGN  200 (264)
T ss_pred             cce-eee---cChhhhhhhhhhh
Confidence            764 222   2344544544443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.59  E-value=6.1e-05  Score=72.35  Aligned_cols=120  Identities=18%  Similarity=0.157  Sum_probs=65.7

Q ss_pred             CCccEEEccccCCc-----ccccccCCcccEEEeeCCCCCcc---cccccccccceEEecccccChHHHHHHhcCCCCCc
Q 036679           57 GKLSKFMVRNEDRL-----ARVSICGPNVRLVDISSLHAPCG---INVALCKNLKELKLFKLSITNEWLCNQFSELPFLE  128 (294)
Q Consensus        57 ~~L~~L~l~~c~~l-----~~~~~~~~~L~~L~l~~c~~~~~---~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~  128 (294)
                      .+|++|+|++...+     ..+....|+|++|.+++-.+...   .-..++|+|..|+++++++++-   ..+++..+|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence            46777777664322     12233467777777766543211   2234667777777777776652   3455667777


Q ss_pred             EEeecccccceeec---ccc-cccceEEeecccCcee---------eeccCCCccEEEEcCcee
Q 036679          129 YLEIFRCMKIRSIK---ISS-PYLKKLLVRFCNKLYE---------FKLDTPNLSVFDYEGDMV  179 (294)
Q Consensus       129 ~L~l~~c~~l~~l~---i~~-~~L~~L~l~~c~~l~~---------~~~~~p~L~~l~~~g~~~  179 (294)
                      .|.+.+.+-...-.   +.. ++|+.|||+.-.....         .....|+|+.++.+|..+
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence            77666533221111   111 5677777765443321         123367788888777654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=97.59  E-value=1.1e-07  Score=82.74  Aligned_cols=163  Identities=18%  Similarity=0.115  Sum_probs=79.8

Q ss_pred             cCCcccEEEeeCCCCC-cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec---ccccccceE
Q 036679           76 CGPNVRLVDISSLHAP-CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK---ISSPYLKKL  151 (294)
Q Consensus        76 ~~~~L~~L~l~~c~~~-~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~---i~~~~L~~L  151 (294)
                      ..+++..++++.+.+. .+..++.+..++.++...++++.  ++..+.+|.+|..+++.+ ++++.++   +..+.|+++
T Consensus       112 s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~s--lp~~~~~~~~l~~l~~~~-n~l~~l~~~~i~m~~L~~l  188 (565)
T KOG0472|consen  112 SLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISS--LPEDMVNLSKLSKLDLEG-NKLKALPENHIAMKRLKHL  188 (565)
T ss_pred             hhhhhhhhhccccceeecCchHHHHhhhhhhhcccccccc--CchHHHHHHHHHHhhccc-cchhhCCHHHHHHHHHHhc
Confidence            3456666666665522 23445566667776666665543  333344566666666665 2333332   223566666


Q ss_pred             EeecccCceeeeccCCC---ccEEEEcCcee---eeecCccccceEEEEEEEeccChhHHHHH-HHHHhcCcccceeEEE
Q 036679          152 LVRFCNKLYEFKLDTPN---LSVFDYEGDMV---SFSSNALALSETSLCLDSINVDNQWLVKF-IELLAKLNHCSNVLNL  224 (294)
Q Consensus       152 ~l~~c~~l~~~~~~~p~---L~~l~~~g~~~---~~~~~~~~L~~~~i~~~~~~~~~~~~~~~-~~~l~~l~~l~~LL~~  224 (294)
                      +.... .++.++-+.-.   |+-+++..+.+   ..+.+++.|.++.++...       ..++ .+..+.++++.. |++
T Consensus       189 d~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~-------i~~lpae~~~~L~~l~v-LDL  259 (565)
T KOG0472|consen  189 DCNSN-LLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQ-------IEMLPAEHLKHLNSLLV-LDL  259 (565)
T ss_pred             ccchh-hhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccH-------HHhhHHHHhccccccee-eec
Confidence            54221 13344433222   33333444433   235566667666552221       1111 223334444444 466


Q ss_pred             eeeeeeecchhhhhccCCCCCCCceEEEEEc
Q 036679          225 ECYAAAIIPRELREILSSPLTYENHVCFIIN  255 (294)
Q Consensus       225 ~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~  255 (294)
                      ..++...+|.+     ...+.+|.+|+++.|
T Consensus       260 RdNklke~Pde-----~clLrsL~rLDlSNN  285 (565)
T KOG0472|consen  260 RDNKLKEVPDE-----ICLLRSLERLDLSNN  285 (565)
T ss_pred             cccccccCchH-----HHHhhhhhhhcccCC
Confidence            66666666766     334556666666653

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.50  E-value=0.00021  Score=63.86  Aligned_cols=32  Identities=19%  Similarity=0.233  Sum_probs=18.4

Q ss_pred             CCCcEEeecccccceeecccccccceEEeecc
Q 036679          125 PFLEYLEIFRCMKIRSIKISSPYLKKLLVRFC  156 (294)
Q Consensus       125 ~~L~~L~l~~c~~l~~l~i~~~~L~~L~l~~c  156 (294)
                      ++|+.|++++|..+.....-..+|++|.++.+
T Consensus       156 sSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNIILPEKLPESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcccCcccccccCcEEEeccc
Confidence            46777777777654321111146777777553

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.49  E-value=2.1e-06  Score=66.69  Aligned_cols=142  Identities=16%  Similarity=0.156  Sum_probs=77.8

Q ss_pred             CCCCCEEEEEcCCCCCe--eccCCCCCccEEEccccCCcccc---cccCCcccEEEeeCCCCC-cccccccccccceEEe
Q 036679           34 CPLIERLKIIDCRGLKS--LEFLNLGKLSKFMVRNEDRLARV---SICGPNVRLVDISSLHAP-CGINVALCKNLKELKL  107 (294)
Q Consensus        34 ~~~Le~L~L~~c~~l~~--l~~~~l~~L~~L~l~~c~~l~~~---~~~~~~L~~L~l~~c~~~-~~~~~~~~~~L~~L~L  107 (294)
                      +.++..|.++.+. +..  -++..+.+|+.|++++++ ++.+   ....+.|+.|+++-+... .+..++++|.|+.|++
T Consensus        32 ~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   32 MSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL  109 (264)
T ss_pred             hhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence            3456666776653 222  234455677777777664 2222   223566666666655422 3456778888888888


Q ss_pred             cccccChHHHHHHhcCCCCCcEEeecccccceeecccc---cccceEEeecccCceeee---ccCCCccEEEEcCcee
Q 036679          108 FKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISS---PYLKKLLVRFCNKLYEFK---LDTPNLSVFDYEGDMV  179 (294)
Q Consensus       108 ~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~---~~L~~L~l~~c~~l~~~~---~~~p~L~~l~~~g~~~  179 (294)
                      .++++.+..++.-+-....|+-|.+++ +..+.++-..   .+|+.|.+.+...++ ++   .+...|+.++++|+..
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhccccee
Confidence            888776654433222233445555555 2334333222   456666665554332 22   2334677788888765

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.45  E-value=9e-05  Score=47.99  Aligned_cols=57  Identities=28%  Similarity=0.342  Sum_probs=31.5

Q ss_pred             CcccEEEeeCCCCC--cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeeccc
Q 036679           78 PNVRLVDISSLHAP--CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRC  135 (294)
Q Consensus        78 ~~L~~L~l~~c~~~--~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c  135 (294)
                      |+|++|++++|.+.  .+..+.++++|++|+++++.++.- -+..+.++++|+.|+++++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCC
Confidence            34555555555422  123455666777777776665432 1234556677777776664

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.40  E-value=8.9e-05  Score=62.76  Aligned_cols=150  Identities=15%  Similarity=0.214  Sum_probs=88.3

Q ss_pred             HHHHHhcCCCCCEEEEEcCCC----------CCeeccCCCCCccEEEccccC--CcccccccCCcccEEEeeCCCC----
Q 036679           27 IRDIVAGCPLIERLKIIDCRG----------LKSLEFLNLGKLSKFMVRNED--RLARVSICGPNVRLVDISSLHA----   90 (294)
Q Consensus        27 l~~~~~~~~~Le~L~L~~c~~----------l~~l~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~~c~~----   90 (294)
                      +..+..-|..|..|..+...+          +-.++++-+.+|+.+.++.|.  ++..+...-|.|+++.......    
T Consensus       174 ~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~  253 (490)
T KOG1259|consen  174 FSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVP  253 (490)
T ss_pred             hHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccc
Confidence            444555566777777766542          112333445677788888776  4545544556666665443220    


Q ss_pred             ---C------------------cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceee-cccc-cc
Q 036679           91 ---P------------------CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSI-KISS-PY  147 (294)
Q Consensus        91 ---~------------------~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l-~i~~-~~  147 (294)
                         +                  ....+..++.|++++|+++.|+.  +.+...-.|.++.|++++.. +..+ .... ++
T Consensus       254 ~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~-i~~v~nLa~L~~  330 (490)
T KOG1259|consen  254 SLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNR-IRTVQNLAELPQ  330 (490)
T ss_pred             cccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhh--hhhhhhhccceeEEeccccc-eeeehhhhhccc
Confidence               0                  00123456678999999988764  33334446899999999843 4333 2222 68


Q ss_pred             cceEEeecccC--ceeeeccCCCccEEEEcCcee
Q 036679          148 LKKLLVRFCNK--LYEFKLDTPNLSVFDYEGDMV  179 (294)
Q Consensus       148 L~~L~l~~c~~--l~~~~~~~p~L~~l~~~g~~~  179 (294)
                      |++|++++...  +..+....-|.+++.+.++.+
T Consensus       331 L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~i  364 (490)
T KOG1259|consen  331 LQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKI  364 (490)
T ss_pred             ceEeecccchhHhhhhhHhhhcCEeeeehhhhhH
Confidence            88888887642  223334455677777777655

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.38  E-value=1.1e-05  Score=75.48  Aligned_cols=124  Identities=23%  Similarity=0.327  Sum_probs=67.5

Q ss_pred             CCCCCCCCCccEEEeeecccCh-HHHHHHHhcCCCCCEEE-----------EEcCC-----C-----CCeecc-------
Q 036679            3 PTRNVTLSSLRELGLFKCAAND-EAIRDIVAGCPLIERLK-----------IIDCR-----G-----LKSLEF-------   53 (294)
Q Consensus         3 p~~~~~l~~Lk~L~L~~~~~~~-~~l~~~~~~~~~Le~L~-----------L~~c~-----~-----l~~l~~-------   53 (294)
                      |+++..|.+||.|.|++|.+.. .++..+-..   ||.|-           +..|.     +     |...++       
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~q---Le~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~  178 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQ---LEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVL  178 (1096)
T ss_pred             CceeccccceeeEEecCcchhhhhhhHHHHHh---hhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHh
Confidence            7788999999999999998753 333333221   22211           11121     1     111111       


Q ss_pred             -----CCCCCccEEEccccCCcccc--cccCCcccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCC
Q 036679           54 -----LNLGKLSKFMVRNEDRLARV--SICGPNVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSEL  124 (294)
Q Consensus        54 -----~~l~~L~~L~l~~c~~l~~~--~~~~~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~  124 (294)
                           .-++.|+.|+++.++ +..+  ...++.|++|+|+.+....  .....+|. |..|.+.+|.++.  +.. +.++
T Consensus       179 mD~SLqll~ale~LnLshNk-~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t--L~g-ie~L  253 (1096)
T KOG1859|consen  179 MDESLQLLPALESLNLSHNK-FTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT--LRG-IENL  253 (1096)
T ss_pred             HHHHHHHHHHhhhhccchhh-hhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHh--hhh-HHhh
Confidence                 113566777777664 1111  2246778888887776321  12334555 7777777776543  221 3346


Q ss_pred             CCCcEEeecc
Q 036679          125 PFLEYLEIFR  134 (294)
Q Consensus       125 ~~L~~L~l~~  134 (294)
                      .+|+.||+++
T Consensus       254 ksL~~LDlsy  263 (1096)
T KOG1859|consen  254 KSLYGLDLSY  263 (1096)
T ss_pred             hhhhccchhH
Confidence            6777777775

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.30  E-value=0.0015  Score=58.52  Aligned_cols=134  Identities=18%  Similarity=0.227  Sum_probs=84.8

Q ss_pred             HhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCCccccc-ccCCcccEEEeeCCC-CCcccccccccccceEEec
Q 036679           31 VAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVS-ICGPNVRLVDISSLH-APCGINVALCKNLKELKLF  108 (294)
Q Consensus        31 ~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~l~~~~-~~~~~L~~L~l~~c~-~~~~~~~~~~~~L~~L~L~  108 (294)
                      +..|+++..|++++| .++.+. .-.++|++|.+++|..+..+. ...++|+.|++++|. ..     .-.++|+.|++.
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sLP-~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~-----sLP~sLe~L~L~  120 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESLP-VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEIS-----GLPESVRSLEIK  120 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCcccC-CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccc-----ccccccceEEeC
Confidence            456799999999999 677665 222469999999998775543 224689999999984 21     112468888887


Q ss_pred             ccccChHHHHHHhcCCCCCcEEeecccccceeeccc---ccccceEEeecccCceeeeccC-CCccEEEEcCc
Q 036679          109 KLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS---SPYLKKLLVRFCNKLYEFKLDT-PNLSVFDYEGD  177 (294)
Q Consensus       109 ~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~---~~~L~~L~l~~c~~l~~~~~~~-p~L~~l~~~g~  177 (294)
                      .+....  +..   -.++|+.|.+.+........+.   .++|++|.+.+|..+. ++-.. ++|++|.+..+
T Consensus       121 ~n~~~~--L~~---LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~LP~SLk~L~ls~n  187 (426)
T PRK15386        121 GSATDS--IKN---VPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEKLPESLQSITLHIE  187 (426)
T ss_pred             CCCCcc--ccc---CcchHhheeccccccccccccccccCCcccEEEecCCCccc-CcccccccCcEEEeccc
Confidence            544322  222   1247888887543321111111   2589999999998653 22112 36777776543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.25  E-value=5.7e-05  Score=48.94  Aligned_cols=56  Identities=25%  Similarity=0.329  Sum_probs=33.0

Q ss_pred             CCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEcccc
Q 036679           10 SSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNE   67 (294)
Q Consensus        10 ~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c   67 (294)
                      |+|++|++++|.++. .....+.++++|++|+++++ .+..+.   +.++++|++|++++|
T Consensus         1 p~L~~L~l~~n~l~~-i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNNKLTE-IPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSSTESE-ECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCCCCCc-cCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence            567777877776642 11234566777777777755 333332   345566666666654

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.15  E-value=4e-05  Score=67.02  Aligned_cols=82  Identities=16%  Similarity=0.111  Sum_probs=54.8

Q ss_pred             cCCCccEEEEcCcee-----eeecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEEeeeeeeecchhhhhc
Q 036679          165 DTPNLSVFDYEGDMV-----SFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAIIPRELREI  239 (294)
Q Consensus       165 ~~p~L~~l~~~g~~~-----~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~~~p~~~~~~  239 (294)
                      ..|+|+.++++++.+     -.|.+.++++++.+.      .+.....-...+.++.+|+. |+++.+.+..+..+.   
T Consensus       272 ~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~------~N~l~~v~~~~f~~ls~L~t-L~L~~N~it~~~~~a---  341 (498)
T KOG4237|consen  272 KLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT------RNKLEFVSSGMFQGLSGLKT-LSLYDNQITTVAPGA---  341 (498)
T ss_pred             hcccceEeccCCCccchhhhhhhcchhhhhhhhcC------cchHHHHHHHhhhcccccee-eeecCCeeEEEeccc---
Confidence            468899999998866     235566777777662      22222223446778888888 588877776665553   


Q ss_pred             cCCCCCCCceEEEEEccc
Q 036679          240 LSSPLTYENHVCFIINSE  257 (294)
Q Consensus       240 ~~~~f~~Lk~L~L~~~~~  257 (294)
                       ..+...|..|.|-.|.+
T Consensus       342 -F~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  342 -FQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             -ccccceeeeeehccCcc
Confidence             44667889999977533

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=97.02  E-value=1.1e-05  Score=70.55  Aligned_cols=126  Identities=18%  Similarity=0.256  Sum_probs=51.2

Q ss_pred             CCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccC-C-cc-cccccCC
Q 036679            3 PTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNED-R-LA-RVSICGP   78 (294)
Q Consensus         3 p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~-~-l~-~~~~~~~   78 (294)
                      |...+.++.|+.|+...|.+  +.++.-++++.+|+.|++..+. +..+ .+.+|..|+++.++.+. . +. +.....+
T Consensus       176 ~~~~i~m~~L~~ld~~~N~L--~tlP~~lg~l~~L~~LyL~~Nk-i~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~  252 (565)
T KOG0472|consen  176 PENHIAMKRLKHLDCNSNLL--ETLPPELGGLESLELLYLRRNK-IRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLN  252 (565)
T ss_pred             CHHHHHHHHHHhcccchhhh--hcCChhhcchhhhHHHHhhhcc-cccCCCCCccHHHHHHHhcccHHHhhHHHHhcccc
Confidence            33334444555555444433  2333334445555555554442 2221 23344444444443332 0 00 0011234


Q ss_pred             cccEEEeeCCCCC-cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecc
Q 036679           79 NVRLVDISSLHAP-CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFR  134 (294)
Q Consensus        79 ~L~~L~l~~c~~~-~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~  134 (294)
                      ++..|++.++... .+..+.-+++|++|+++++.++.  ++..+++. +|+.|.+.+
T Consensus       253 ~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~--Lp~sLgnl-hL~~L~leG  306 (565)
T KOG0472|consen  253 SLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISS--LPYSLGNL-HLKFLALEG  306 (565)
T ss_pred             cceeeeccccccccCchHHHHhhhhhhhcccCCcccc--CCcccccc-eeeehhhcC
Confidence            4555555555421 12223334455555555554443  33333444 444444444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.94  E-value=0.00048  Score=62.28  Aligned_cols=166  Identities=23%  Similarity=0.271  Sum_probs=89.3

Q ss_pred             CCCCCccEEEeeecccChHHHHHHHhcC-CCCCEEEEEcCCCCCee--ccCCCCCccEEEccccC--CcccccccCCccc
Q 036679            7 VTLSSLRELGLFKCAANDEAIRDIVAGC-PLIERLKIIDCRGLKSL--EFLNLGKLSKFMVRNED--RLARVSICGPNVR   81 (294)
Q Consensus         7 ~~l~~Lk~L~L~~~~~~~~~l~~~~~~~-~~Le~L~L~~c~~l~~l--~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~   81 (294)
                      ..++.++.|++.++.+++  ++...... ++|++|++++.. ++.+  .+..++.|+.|+++.+.  .+.......+.|+
T Consensus       113 ~~~~~l~~L~l~~n~i~~--i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~  189 (394)
T COG4886         113 LELTNLTSLDLDNNNITD--IPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN  189 (394)
T ss_pred             hcccceeEEecCCccccc--Cccccccchhhcccccccccc-hhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhh
Confidence            344667778887776643  23333444 377888877763 3333  45667788888887775  2222222567777


Q ss_pred             EEEeeCCCCCc-ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceee--cccc-cccceEEeeccc
Q 036679           82 LVDISSLHAPC-GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSI--KISS-PYLKKLLVRFCN  157 (294)
Q Consensus        82 ~L~l~~c~~~~-~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l--~i~~-~~L~~L~l~~c~  157 (294)
                      .|+++++.+.. +........|+++.+.++.+..  ....+.+...+..+.+.+.. +..+  .+.. ++++.|++.++.
T Consensus       190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~--~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~l~~l~~L~~s~n~  266 (394)
T COG4886         190 NLDLSGNKISDLPPEIELLSALEELDLSNNSIIE--LLSSLSNLKNLSGLELSNNK-LEDLPESIGNLSNLETLDLSNNQ  266 (394)
T ss_pred             heeccCCccccCchhhhhhhhhhhhhhcCCccee--cchhhhhcccccccccCCce-eeeccchhccccccceecccccc
Confidence            88887776332 2222334457777777774221  12223445555555544322 2221  1111 457777776654


Q ss_pred             Cceeee--ccCCCccEEEEcCcee
Q 036679          158 KLYEFK--LDTPNLSVFDYEGDMV  179 (294)
Q Consensus       158 ~l~~~~--~~~p~L~~l~~~g~~~  179 (294)
                       ++++.  ....+++.+++.|...
T Consensus       267 -i~~i~~~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         267 -ISSISSLGSLTNLRELDLSGNSL  289 (394)
T ss_pred             -ccccccccccCccCEEeccCccc
Confidence             22332  2335667777766543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.85  E-value=0.00072  Score=40.56  Aligned_cols=35  Identities=23%  Similarity=0.324  Sum_probs=27.1

Q ss_pred             CCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCC
Q 036679           10 SSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCR   46 (294)
Q Consensus        10 ~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~   46 (294)
                      ++|++|++++|.+++  ++..++++++|+.|+++++.
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence            579999999999864  45557899999999999884

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.84  E-value=0.0032  Score=52.84  Aligned_cols=23  Identities=22%  Similarity=0.348  Sum_probs=15.9

Q ss_pred             CCCccEEEeeecccChHHHHHHH
Q 036679            9 LSSLRELGLFKCAANDEAIRDIV   31 (294)
Q Consensus         9 l~~Lk~L~L~~~~~~~~~l~~~~   31 (294)
                      +..++.++|++|.+..++...+.
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~   51 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELC   51 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHH
Confidence            56678888888888765554443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=96.83  E-value=0.00088  Score=66.24  Aligned_cols=125  Identities=17%  Similarity=0.136  Sum_probs=71.6

Q ss_pred             CCCCccEEEeeeccc-ChHHHHHHHhcCCCCCEEEEEcCCCCCeec--cCCCCCccEEEccccCCccccc---ccCCccc
Q 036679            8 TLSSLRELGLFKCAA-NDEAIRDIVAGCPLIERLKIIDCRGLKSLE--FLNLGKLSKFMVRNEDRLARVS---ICGPNVR   81 (294)
Q Consensus         8 ~l~~Lk~L~L~~~~~-~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~--~~~l~~L~~L~l~~c~~l~~~~---~~~~~L~   81 (294)
                      .++.|++|-+.++.. -......++..+|.|+.|++++|..+..|+  ++.+-+|++|++++.. +..+.   -....|.
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~  621 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLI  621 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhh
Confidence            355777777777642 112233456778888888888887766653  5567778888877653 22221   1234666


Q ss_pred             EEEeeCCC-C-CcccccccccccceEEeccccc--ChHHHHHHhcCCCCCcEEeecc
Q 036679           82 LVDISSLH-A-PCGINVALCKNLKELKLFKLSI--TNEWLCNQFSELPFLEYLEIFR  134 (294)
Q Consensus        82 ~L~l~~c~-~-~~~~~~~~~~~L~~L~L~~~~i--~~~~l~~l~~~~~~L~~L~l~~  134 (294)
                      +|++.... . ..+.....+++|++|.+.....  +...+.+ +.+..+|+.+.+..
T Consensus       622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~e-l~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKE-LENLEHLENLSITI  677 (889)
T ss_pred             eeccccccccccccchhhhcccccEEEeeccccccchhhHHh-hhcccchhhheeec
Confidence            77766554 1 1122334477888888776542  2222222 24556666666544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=96.81  E-value=0.00044  Score=68.33  Aligned_cols=82  Identities=18%  Similarity=0.178  Sum_probs=55.5

Q ss_pred             CCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec--cCCCCCccEEEccccCCcccc---cccCCcc
Q 036679            6 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE--FLNLGKLSKFMVRNEDRLARV---SICGPNV   80 (294)
Q Consensus         6 ~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~--~~~l~~L~~L~l~~c~~l~~~---~~~~~~L   80 (294)
                      +..+|.|++|+|++|.- ...+++.++.+-+|++|++++.. ++.++  +..+..|.+|++.....+..+   .....+|
T Consensus       567 f~~m~~LrVLDLs~~~~-l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~L  644 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSS-LSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSL  644 (889)
T ss_pred             HhhCcceEEEECCCCCc-cCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccc
Confidence            56789999999998632 25677778888899999998874 44332  345567777877765543322   2235778


Q ss_pred             cEEEeeCCC
Q 036679           81 RLVDISSLH   89 (294)
Q Consensus        81 ~~L~l~~c~   89 (294)
                      ++|.+....
T Consensus       645 r~L~l~~s~  653 (889)
T KOG4658|consen  645 RVLRLPRSA  653 (889)
T ss_pred             cEEEeeccc
Confidence            888776543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.80  E-value=0.00012  Score=61.25  Aligned_cols=107  Identities=21%  Similarity=0.327  Sum_probs=73.7

Q ss_pred             CCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccC--Cccccc--ccCCcccEE
Q 036679            9 LSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNED--RLARVS--ICGPNVRLV   83 (294)
Q Consensus         9 l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~--~l~~~~--~~~~~L~~L   83 (294)
                      +.+.|+|+.++|.++|-.   ++..+|.||.|.|+-+. +..| .+..|.+|++|.+..+.  .+.++.  .+.|+|+.|
T Consensus        18 l~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNk-IssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNK-ISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHHH---HHHhcccceeEEeeccc-cccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            567899999999987643   56789999999999874 3333 24567899999887654  333332  368999999


Q ss_pred             EeeCCC--CC--c---ccccccccccceEEecccccChHHHHHHh
Q 036679           84 DISSLH--AP--C---GINVALCKNLKELKLFKLSITNEWLCNQF  121 (294)
Q Consensus        84 ~l~~c~--~~--~---~~~~~~~~~L~~L~L~~~~i~~~~l~~l~  121 (294)
                      .|..+.  ..  .   ...+..+|+|++|+  +..++++.+...+
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD--nv~VteeEle~AL  136 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD--NVPVTEEELEEAL  136 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc--CccccHHHHHHHH
Confidence            987654  11  1   13456789999874  5556665555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.63  E-value=0.0017  Score=55.16  Aligned_cols=127  Identities=14%  Similarity=0.089  Sum_probs=66.7

Q ss_pred             CCCccEEEeeecccCh-HHHHHHHhcCCCCCEEEEEcCC---CCCeeccCCCCCccEEEccccC----CcccccccCCcc
Q 036679            9 LSSLRELGLFKCAAND-EAIRDIVAGCPLIERLKIIDCR---GLKSLEFLNLGKLSKFMVRNED----RLARVSICGPNV   80 (294)
Q Consensus         9 l~~Lk~L~L~~~~~~~-~~l~~~~~~~~~Le~L~L~~c~---~l~~l~~~~l~~L~~L~l~~c~----~l~~~~~~~~~L   80 (294)
                      ++.++.|+|.+|.++| +.+..+..++|.|+.|+++.+.   -+.++.+ ...+|+.+.+.+-.    ......-..|.+
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~-p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPL-PLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcc-cccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            4566777777777766 6666777777777777776553   1222321 12456666665532    112222344566


Q ss_pred             cEEEeeCCCCC---ccc-ccc-cccccceEEecccccCh-HHHHHHhcCCCCCcEEeecccc
Q 036679           81 RLVDISSLHAP---CGI-NVA-LCKNLKELKLFKLSITN-EWLCNQFSELPFLEYLEIFRCM  136 (294)
Q Consensus        81 ~~L~l~~c~~~---~~~-~~~-~~~~L~~L~L~~~~i~~-~~l~~l~~~~~~L~~L~l~~c~  136 (294)
                      +.|+++.+...   ... ... .-+.+++++.-.|...- ....++...||+++.+.+..|+
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P  210 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP  210 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc
Confidence            66666665311   110 000 11345555555553211 1233445567888888777765

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.61  E-value=0.0033  Score=37.67  Aligned_cols=38  Identities=42%  Similarity=0.479  Sum_probs=25.7

Q ss_pred             cccceEEecccccChHHHHHHhcCCCCCcEEeeccccccee
Q 036679          100 KNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRS  140 (294)
Q Consensus       100 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~  140 (294)
                      ++|++|+++++.+++  ++..++++++|+.|++++++ +++
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~-i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP-ISD   38 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC-CSB
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC-CCC
Confidence            467888888887775  55556778888888888763 444

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.58  E-value=0.0048  Score=52.51  Aligned_cols=192  Identities=17%  Similarity=0.100  Sum_probs=101.5

Q ss_pred             cEEEeeCCCCCccc----ccccccccceEEecccccCh-HHHHHHhcCCCCCcEEeecccc---cceeecccccccceEE
Q 036679           81 RLVDISSLHAPCGI----NVALCKNLKELKLFKLSITN-EWLCNQFSELPFLEYLEIFRCM---KIRSIKISSPYLKKLL  152 (294)
Q Consensus        81 ~~L~l~~c~~~~~~----~~~~~~~L~~L~L~~~~i~~-~~l~~l~~~~~~L~~L~l~~c~---~l~~l~i~~~~L~~L~  152 (294)
                      +-+.+.+|.++...    ....+..++.++|.++.+++ +++..++.+.|+|+.|+++..+   .+.+++.+..+|+.|.
T Consensus        48 ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lV  127 (418)
T KOG2982|consen   48 ELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLV  127 (418)
T ss_pred             hhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEE
Confidence            34455566543321    12467889999999999887 4577788899999999998632   2333443446888888


Q ss_pred             eecccC----ceeeeccCCCccEEEEcCcee-------eeecC-ccccceEEEEEEEeccChhHHHHHHHHHhcCcccce
Q 036679          153 VRFCNK----LYEFKLDTPNLSVFDYEGDMV-------SFSSN-ALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSN  220 (294)
Q Consensus       153 l~~c~~----l~~~~~~~p~L~~l~~~g~~~-------~~~~~-~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~  220 (294)
                      +.+...    .+...-+.|.++.|+++.+..       ..... .+.+..+..  .. .....|. ..-++-..||++..
T Consensus       128 LNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~--~~-c~~~~w~-~~~~l~r~Fpnv~s  203 (418)
T KOG2982|consen  128 LNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQ--LP-CLEQLWL-NKNKLSRIFPNVNS  203 (418)
T ss_pred             EcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhc--CC-cHHHHHH-HHHhHHhhcccchh
Confidence            876431    223334567777776665422       00000 011222211  10 0011232 23345567888888


Q ss_pred             eEEEeeeeeeecchhhhhccCCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEeeC
Q 036679          221 VLNLECYAAAIIPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCN  285 (294)
Q Consensus       221 LL~~~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~~~  285 (294)
                      + .++.........+   ...-+|+.+--|.|..+   +..+|+ .++. |...|.+..|.+...
T Consensus       204 v-~v~e~PlK~~s~e---k~se~~p~~~~LnL~~~---~idswa-svD~-Ln~f~~l~dlRv~~~  259 (418)
T KOG2982|consen  204 V-FVCEGPLKTESSE---KGSEPFPSLSCLNLGAN---NIDSWA-SVDA-LNGFPQLVDLRVSEN  259 (418)
T ss_pred             e-eeecCcccchhhc---ccCCCCCcchhhhhccc---ccccHH-HHHH-HcCCchhheeeccCC
Confidence            5 4433222111111   01234455556777652   223333 4565 666677777666543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.47  E-value=0.0012  Score=59.79  Aligned_cols=157  Identities=19%  Similarity=0.120  Sum_probs=82.8

Q ss_pred             cCCCCCEEEEEcCCC--CCeeccCCCC-CccEEEccccCCcccc---cccCCcccEEEeeCCCCCc-ccccccccccceE
Q 036679           33 GCPLIERLKIIDCRG--LKSLEFLNLG-KLSKFMVRNEDRLARV---SICGPNVRLVDISSLHAPC-GINVALCKNLKEL  105 (294)
Q Consensus        33 ~~~~Le~L~L~~c~~--l~~l~~~~l~-~L~~L~l~~c~~l~~~---~~~~~~L~~L~l~~c~~~~-~~~~~~~~~L~~L  105 (294)
                      ..+.+..|++.+..-  +... ..... +|+.|++++.. +..+   ....++|+.|+++.|.... +......++|+.|
T Consensus       114 ~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L  191 (394)
T COG4886         114 ELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL  191 (394)
T ss_pred             cccceeEEecCCcccccCccc-cccchhhcccccccccc-hhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence            336777777766542  2211 11222 68888887764 2222   2356788888888876332 2222256778888


Q ss_pred             EecccccChHHHHHHhcCCCCCcEEeecccccceeecccc--cccceEEeecccCce--eeeccCCCccEEEEcCceeee
Q 036679          106 KLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISS--PYLKKLLVRFCNKLY--EFKLDTPNLSVFDYEGDMVSF  181 (294)
Q Consensus       106 ~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~--~~L~~L~l~~c~~l~--~~~~~~p~L~~l~~~g~~~~~  181 (294)
                      +++++.+.+  ++.......+|+.|.+++...++.+....  .++..+.+.+.....  ......++++++++.++.+..
T Consensus       192 ~ls~N~i~~--l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~  269 (394)
T COG4886         192 DLSGNKISD--LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISS  269 (394)
T ss_pred             eccCCcccc--CchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccc
Confidence            888887665  33333344568888877653333222111  344444433322211  222344567788877776521


Q ss_pred             ---ecCccccceEEE
Q 036679          182 ---SSNALALSETSL  193 (294)
Q Consensus       182 ---~~~~~~L~~~~i  193 (294)
                         .....+++.+.+
T Consensus       270 i~~~~~~~~l~~L~~  284 (394)
T COG4886         270 ISSLGSLTNLRELDL  284 (394)
T ss_pred             cccccccCccCEEec
Confidence               223344555554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.31  E-value=0.001  Score=55.22  Aligned_cols=38  Identities=34%  Similarity=0.412  Sum_probs=19.0

Q ss_pred             cccccceEEecccccChH-HHHHHhcCCCCCcEEeecccc
Q 036679           98 LCKNLKELKLFKLSITNE-WLCNQFSELPFLEYLEIFRCM  136 (294)
Q Consensus        98 ~~~~L~~L~L~~~~i~~~-~l~~l~~~~~~L~~L~l~~c~  136 (294)
                      .+|+|+++.++++.+.+- .+. -+....+|..|++.+|.
T Consensus        89 ~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   89 KAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCS  127 (260)
T ss_pred             hCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCC
Confidence            446666666666654431 111 12334556666666654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.27  E-value=0.0053  Score=51.58  Aligned_cols=146  Identities=18%  Similarity=0.162  Sum_probs=87.4

Q ss_pred             HHhcCCCCCEEEEEcCC-CCCee-----ccCCCCCccEEEccccCCcccc-----------------cccCCcccEEEee
Q 036679           30 IVAGCPLIERLKIIDCR-GLKSL-----EFLNLGKLSKFMVRNEDRLARV-----------------SICGPNVRLVDIS   86 (294)
Q Consensus        30 ~~~~~~~Le~L~L~~c~-~l~~l-----~~~~l~~L~~L~l~~c~~l~~~-----------------~~~~~~L~~L~l~   86 (294)
                      ..-+||+|+..+|+++- +.+..     .+++-..|++|.+++|. +.++                 ..+.|.|+.+...
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicg  165 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG  165 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence            35577888888887764 22211     13444677777777763 2221                 1245788888777


Q ss_pred             CCCCC-cc-----cccccccccceEEecccccChHHHHHH----hcCCCCCcEEeeccccccee-----ec---cccccc
Q 036679           87 SLHAP-CG-----INVALCKNLKELKLFKLSITNEWLCNQ----FSELPFLEYLEIFRCMKIRS-----IK---ISSPYL  148 (294)
Q Consensus        87 ~c~~~-~~-----~~~~~~~~L~~L~L~~~~i~~~~l~~l----~~~~~~L~~L~l~~c~~l~~-----l~---i~~~~L  148 (294)
                      .+.+- .+     ..+.+-.+|+++.+..+.|..+++..+    +..|.+|+.|++.+.. .+.     +.   ...+.|
T Consensus       166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W~~l  244 (388)
T COG5238         166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEWNLL  244 (388)
T ss_pred             cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhcccchh
Confidence            76621 11     123333588999999998877655433    3468899999998743 211     11   112568


Q ss_pred             ceEEeecccCcee---------eeccCCCccEEEEcCc
Q 036679          149 KKLLVRFCNKLYE---------FKLDTPNLSVFDYEGD  177 (294)
Q Consensus       149 ~~L~l~~c~~l~~---------~~~~~p~L~~l~~~g~  177 (294)
                      +.|.+.+|-.-..         -....|+|..|....+
T Consensus       245 rEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yn  282 (388)
T COG5238         245 RELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYN  282 (388)
T ss_pred             hhccccchhhccccHHHHHHHhhhhcCCCccccccchh
Confidence            9999988852210         1145688888776654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.18  E-value=0.005  Score=49.43  Aligned_cols=57  Identities=25%  Similarity=0.255  Sum_probs=29.0

Q ss_pred             CcccEEEeeCCCCC-cccc-cccccccceEEecccccChH-HHHHHhcCCCCCcEEeeccc
Q 036679           78 PNVRLVDISSLHAP-CGIN-VALCKNLKELKLFKLSITNE-WLCNQFSELPFLEYLEIFRC  135 (294)
Q Consensus        78 ~~L~~L~l~~c~~~-~~~~-~~~~~~L~~L~L~~~~i~~~-~l~~l~~~~~~L~~L~l~~c  135 (294)
                      ++|.+|.+..+.+. .... -..+|+|+.|.|.++++..- ++.. +..||.|++|.+-+.
T Consensus        64 ~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~N  123 (233)
T KOG1644|consen   64 PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGN  123 (233)
T ss_pred             cccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCC
Confidence            45555555555421 1111 12456677777777664431 1222 345677777776654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.01  E-value=0.00045  Score=57.98  Aligned_cols=77  Identities=23%  Similarity=0.178  Sum_probs=51.5

Q ss_pred             CccEEEccccCCcccccc--cCCcccEEEeeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeeccc
Q 036679           58 KLSKFMVRNEDRLARVSI--CGPNVRLVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRC  135 (294)
Q Consensus        58 ~L~~L~l~~c~~l~~~~~--~~~~L~~L~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c  135 (294)
                      +.++|+.++| ++.++.+  .+|.|+.|.|+-+.+..-..+..|.+|++|+|..|.|.+-+--+-+.+.|+|+.|+|...
T Consensus        20 ~vkKLNcwg~-~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN   98 (388)
T KOG2123|consen   20 NVKKLNCWGC-GLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN   98 (388)
T ss_pred             HhhhhcccCC-CccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence            3455555555 4444433  467788888877765444456788999999999888776322234567899999988763

>PLN03150 hypothetical protein; Provisional

Probab=95.93  E-value=0.0084  Score=57.57  Aligned_cols=100  Identities=6%  Similarity=-0.004  Sum_probs=65.9

Q ss_pred             CccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee--ccCCCCCccEEEccccCCcc---cccccCCcccEEEe
Q 036679           11 SLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL--EFLNLGKLSKFMVRNEDRLA---RVSICGPNVRLVDI   85 (294)
Q Consensus        11 ~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l--~~~~l~~L~~L~l~~c~~l~---~~~~~~~~L~~L~l   85 (294)
                      .++.|+|+++.+.. .++..+..+++|+.|+|+++.--..+  .+..+++|+.|+++++.--.   .....+++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g-~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRG-FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccc-cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            37889999988754 33445788999999999987532222  25678899999999886221   11225689999999


Q ss_pred             eCCCCC--ccccccc-ccccceEEecccc
Q 036679           86 SSLHAP--CGINVAL-CKNLKELKLFKLS  111 (294)
Q Consensus        86 ~~c~~~--~~~~~~~-~~~L~~L~L~~~~  111 (294)
                      ++|.+.  .+..+.. ..++..+++.++.
T Consensus       498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        498 NGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             cCCcccccCChHHhhccccCceEEecCCc
Confidence            998732  2222222 2345667776653

>PLN03150 hypothetical protein; Provisional

Probab=95.73  E-value=0.021  Score=54.86  Aligned_cols=78  Identities=14%  Similarity=0.071  Sum_probs=41.1

Q ss_pred             ccEEEeeCCCCC--cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecc--c-ccccceEEee
Q 036679           80 VRLVDISSLHAP--CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKI--S-SPYLKKLLVR  154 (294)
Q Consensus        80 L~~L~l~~c~~~--~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i--~-~~~L~~L~l~  154 (294)
                      ++.|+++++...  .+..+..+++|+.|+|+++.+.+. ++..++.+++|+.|+++++.--..++.  . .++|++|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            555666655422  223345566666666666665542 444455666666666666432222221  1 1466666666


Q ss_pred             cccC
Q 036679          155 FCNK  158 (294)
Q Consensus       155 ~c~~  158 (294)
                      ++..
T Consensus       499 ~N~l  502 (623)
T PLN03150        499 GNSL  502 (623)
T ss_pred             CCcc
Confidence            6553

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.65  E-value=0.0093  Score=47.93  Aligned_cols=70  Identities=27%  Similarity=0.298  Sum_probs=51.7

Q ss_pred             HhcCccccee--EEEeeeeeeecchhhhhccCCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEeeCCCCC
Q 036679          212 LAKLNHCSNV--LNLECYAAAIIPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCNDCDH  289 (294)
Q Consensus       212 l~~l~~l~~L--L~~~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~~~~~~~  289 (294)
                      +..||++..|  |.++.+.+..+.+++    .+.+++|+.|.|..|+...   +.++ +- |..||.|+.|++.+++..|
T Consensus        57 l~~lp~l~rL~tLll~nNrIt~I~p~L----~~~~p~l~~L~LtnNsi~~---l~dl-~p-La~~p~L~~Ltll~Npv~~  127 (233)
T KOG1644|consen   57 LDNLPHLPRLHTLLLNNNRITRIDPDL----DTFLPNLKTLILTNNSIQE---LGDL-DP-LASCPKLEYLTLLGNPVEH  127 (233)
T ss_pred             cccCCCccccceEEecCCcceeeccch----hhhccccceEEecCcchhh---hhhc-ch-hccCCccceeeecCCchhc
Confidence            4567777777  788888777776663    3456789999999865533   3333 32 7899999999999988877


Q ss_pred             c
Q 036679          290 E  290 (294)
Q Consensus       290 ~  290 (294)
                      +
T Consensus       128 k  128 (233)
T KOG1644|consen  128 K  128 (233)
T ss_pred             c
Confidence            6

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=95.47  E-value=0.0017  Score=59.69  Aligned_cols=126  Identities=20%  Similarity=0.194  Sum_probs=65.9

Q ss_pred             CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee--ccCCCCCccEEEccccC--CcccccccC
Q 036679            2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL--EFLNLGKLSKFMVRNED--RLARVSICG   77 (294)
Q Consensus         2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l--~~~~l~~L~~L~l~~c~--~l~~~~~~~   77 (294)
                      ||..+..+..|.+|+|+.|+++  .++.-+..|| |+.|-++++. +..+  .+...++|..|+.+.|.  .+..-....
T Consensus       113 ip~~i~~L~~lt~l~ls~NqlS--~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l  188 (722)
T KOG0532|consen  113 IPEAICNLEALTFLDLSSNQLS--HLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYL  188 (722)
T ss_pred             cchhhhhhhHHHHhhhccchhh--cCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhH
Confidence            6777788888888888888763  3333344455 6777776653 3322  24445677777777664  121111223


Q ss_pred             CcccEEEeeCCC-CCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecc
Q 036679           78 PNVRLVDISSLH-APCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFR  134 (294)
Q Consensus        78 ~~L~~L~l~~c~-~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~  134 (294)
                      .+|+.|.+..+. ...+..+. +-.|.+|+++.|+++.  ++--+.+...|++|.|.+
T Consensus       189 ~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~--iPv~fr~m~~Lq~l~Len  243 (722)
T KOG0532|consen  189 TSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISY--LPVDFRKMRHLQVLQLEN  243 (722)
T ss_pred             HHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceee--cchhhhhhhhheeeeecc
Confidence            344555444443 11222222 2235555655555543  333344455566655554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.30  E-value=0.0045  Score=49.65  Aligned_cols=58  Identities=19%  Similarity=0.231  Sum_probs=27.0

Q ss_pred             ceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec-----ccccccceEEeecccCcee
Q 036679          103 KELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK-----ISSPYLKKLLVRFCNKLYE  161 (294)
Q Consensus       103 ~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~-----i~~~~L~~L~l~~c~~l~~  161 (294)
                      +.++-+++.|..+++.. +.+++.++.|.+.+|..+.+..     -..++|+.|+|++|+.+++
T Consensus       104 eaVDAsds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~  166 (221)
T KOG3864|consen  104 EAVDASDSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD  166 (221)
T ss_pred             EEEecCCchHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence            34444444444444433 2345555555555554443321     1124555555555555543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=95.09  E-value=0.0059  Score=55.70  Aligned_cols=122  Identities=23%  Similarity=0.135  Sum_probs=64.3

Q ss_pred             CCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec-cCCCCCccEEEccccC--CcccccccCCcccEEEe
Q 036679            9 LSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE-FLNLGKLSKFMVRNED--RLARVSICGPNVRLVDI   85 (294)
Q Consensus         9 l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~-~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l   85 (294)
                      +..++.++++.+.+..  ...-+..+.+|+.|++.++.--+..+ +..+++|+.|+++++.  .+..+. .++.|+.|++
T Consensus        71 l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~-~l~~L~~L~l  147 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLS-TLTLLKELNL  147 (414)
T ss_pred             hHhHHhhccchhhhhh--hhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchh-hccchhhhee
Confidence            4455555555554422  12224556667777766653212222 3456677777777654  222221 2344777777


Q ss_pred             eCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecc
Q 036679           86 SSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFR  134 (294)
Q Consensus        86 ~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~  134 (294)
                      .+|.......+..+++|+.+++.++.+.+-.-.. ...+..++.+.+.+
T Consensus       148 ~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~  195 (414)
T KOG0531|consen  148 SGNLISDISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGG  195 (414)
T ss_pred             ccCcchhccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccC
Confidence            7776433333444667777777777655421101 34566777776665

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=94.81  E-value=0.00084  Score=61.59  Aligned_cols=94  Identities=17%  Similarity=0.207  Sum_probs=58.4

Q ss_pred             ccEEEccccC---CcccccccCCcccEEEeeCCCCC-cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecc
Q 036679           59 LSKFMVRNED---RLARVSICGPNVRLVDISSLHAP-CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFR  134 (294)
Q Consensus        59 L~~L~l~~c~---~l~~~~~~~~~L~~L~l~~c~~~-~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~  134 (294)
                      |+.|-+++++   ..+++. ..+.|..|+.+.|... .+..+++..+|+.|.+..+++.+  ++.-+. +-.|..||++ 
T Consensus       145 Lkvli~sNNkl~~lp~~ig-~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~--lp~El~-~LpLi~lDfS-  219 (722)
T KOG0532|consen  145 LKVLIVSNNKLTSLPEEIG-LLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED--LPEELC-SLPLIRLDFS-  219 (722)
T ss_pred             ceeEEEecCccccCCcccc-cchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh--CCHHHh-CCceeeeecc-
Confidence            6666666554   112223 4466777777777632 23345566777777777776543  333233 5678888877 


Q ss_pred             cccceeecccc---cccceEEeeccc
Q 036679          135 CMKIRSIKISS---PYLKKLLVRFCN  157 (294)
Q Consensus       135 c~~l~~l~i~~---~~L~~L~l~~c~  157 (294)
                      |+++..+++..   .+|++|.+.+.+
T Consensus       220 cNkis~iPv~fr~m~~Lq~l~LenNP  245 (722)
T KOG0532|consen  220 CNKISYLPVDFRKMRHLQVLQLENNP  245 (722)
T ss_pred             cCceeecchhhhhhhhheeeeeccCC
Confidence            68888888765   577777777765

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.76  E-value=0.036  Score=28.97  Aligned_cols=25  Identities=32%  Similarity=0.700  Sum_probs=21.7

Q ss_pred             CccEEEeeecccCh-HHHHHHHhcCC
Q 036679           11 SLRELGLFKCAAND-EAIRDIVAGCP   35 (294)
Q Consensus        11 ~Lk~L~L~~~~~~~-~~l~~~~~~~~   35 (294)
                      +||+|.|..+.+.+ ..+..++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            58999999999866 47899999997

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=94.62  E-value=0.0099  Score=54.21  Aligned_cols=103  Identities=20%  Similarity=0.195  Sum_probs=72.0

Q ss_pred             CCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCC--CCCeeccCCCCCccEEEccccC--CcccccccCCccc
Q 036679            6 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCR--GLKSLEFLNLGKLSKFMVRNED--RLARVSICGPNVR   81 (294)
Q Consensus         6 ~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~--~l~~l~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~   81 (294)
                      ...+.+|..|++.++.+  +.+...+..+++|+.|+++++.  ++..  +..++.|+.|++.++.  .+..+. ..++|+
T Consensus        91 l~~~~~l~~l~l~~n~i--~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~~~-~l~~L~  165 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKI--EKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDISGLE-SLKSLK  165 (414)
T ss_pred             cccccceeeeeccccch--hhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhccCCc-cchhhh
Confidence            56688999999999987  4444446789999999999875  2332  3345668889888875  222221 257788


Q ss_pred             EEEeeCCCCCcccc--cccccccceEEecccccC
Q 036679           82 LVDISSLHAPCGIN--VALCKNLKELKLFKLSIT  113 (294)
Q Consensus        82 ~L~l~~c~~~~~~~--~~~~~~L~~L~L~~~~i~  113 (294)
                      .++++++.......  ...+.+++.+.+.++.+.
T Consensus       166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  166 LLDLSYNRIVDIENDELSELISLEELDLGGNSIR  199 (414)
T ss_pred             cccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence            88888887433222  367788888888887654

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.73  E-value=0.069  Score=27.89  Aligned_cols=25  Identities=32%  Similarity=0.364  Sum_probs=20.9

Q ss_pred             ccceEEecccccChH-HHHHHhcCCC
Q 036679          101 NLKELKLFKLSITNE-WLCNQFSELP  125 (294)
Q Consensus       101 ~L~~L~L~~~~i~~~-~l~~l~~~~~  125 (294)
                      +||+|+|..+.+.++ .++.++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            489999999987665 5889999887

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=93.67  E-value=0.0051  Score=58.32  Aligned_cols=55  Identities=18%  Similarity=0.237  Sum_probs=29.0

Q ss_pred             CCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCC--CCCeeccCCCCCccEEEcccc
Q 036679            9 LSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCR--GLKSLEFLNLGKLSKFMVRNE   67 (294)
Q Consensus         9 l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~--~l~~l~~~~l~~L~~L~l~~c   67 (294)
                      ++.|+.|+|+.|++++  .. .+..|+.|+.|+|+++.  .+-.+...+|. |..|.++++
T Consensus       186 l~ale~LnLshNk~~~--v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN  242 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTK--VD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN  242 (1096)
T ss_pred             HHHhhhhccchhhhhh--hH-HHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence            4566667777766643  22 24556667777776653  12223333333 555555554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=93.43  E-value=0.056  Score=27.46  Aligned_cols=22  Identities=23%  Similarity=0.255  Sum_probs=15.9

Q ss_pred             CCCccEEEeeecccChHHHHHH
Q 036679            9 LSSLRELGLFKCAANDEAIRDI   30 (294)
Q Consensus         9 l~~Lk~L~L~~~~~~~~~l~~~   30 (294)
                      +++|++|+|++|.++++++..+
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHh
Confidence            4789999999999988777654

...

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=93.34  E-value=0.08  Score=27.53  Aligned_cols=23  Identities=35%  Similarity=0.635  Sum_probs=17.2

Q ss_pred             CCCccEEEeeecc-cChHHHHHHH
Q 036679            9 LSSLRELGLFKCA-ANDEAIRDIV   31 (294)
Q Consensus         9 l~~Lk~L~L~~~~-~~~~~l~~~~   31 (294)
                      +++|+.|+|++|. ++|.++..+.
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~   24 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALA   24 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHh
Confidence            5778888888884 7887776654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.10  E-value=0.019  Score=46.19  Aligned_cols=58  Identities=12%  Similarity=0.159  Sum_probs=32.9

Q ss_pred             cEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCC-----CeeccCCCCCccEEEccccCCccc
Q 036679           13 RELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGL-----KSLEFLNLGKLSKFMVRNEDRLAR   72 (294)
Q Consensus        13 k~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l-----~~l~~~~l~~L~~L~l~~c~~l~~   72 (294)
                      +.++=+++.|..+++.. +..++.|+.|.+.+|..+     +.+.- ..++|+.|++++|+.+.+
T Consensus       104 eaVDAsds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~  166 (221)
T KOG3864|consen  104 EAVDASDSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITD  166 (221)
T ss_pred             EEEecCCchHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeech
Confidence            34444444444455544 356777777777777643     22221 236777777777775544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.05  E-value=0.035  Score=46.31  Aligned_cols=95  Identities=21%  Similarity=0.210  Sum_probs=57.3

Q ss_pred             CcccEEEeeCCCCCcccccccccccceEEeccc--ccChHHHHHHhcCCCCCcEEeecccccceeec-ccc----cccce
Q 036679           78 PNVRLVDISSLHAPCGINVALCKNLKELKLFKL--SITNEWLCNQFSELPFLEYLEIFRCMKIRSIK-ISS----PYLKK  150 (294)
Q Consensus        78 ~~L~~L~l~~c~~~~~~~~~~~~~L~~L~L~~~--~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~-i~~----~~L~~  150 (294)
                      ..|+.+.+.++.......+-.+|+|++|.++.+  ++.. ++.-+...||+|++|++++. +++.+. +..    ++|+.
T Consensus        43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~-~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSG-GLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLKS  120 (260)
T ss_pred             cchhhhhhhccceeecccCCCcchhhhhcccCCcccccc-cceehhhhCCceeEEeecCC-ccccccccchhhhhcchhh
Confidence            344444444444322233446688999999988  4443 36666778899999999983 343321 111    57889


Q ss_pred             EEeecccCce------eeeccCCCccEEEE
Q 036679          151 LLVRFCNKLY------EFKLDTPNLSVFDY  174 (294)
Q Consensus       151 L~l~~c~~l~------~~~~~~p~L~~l~~  174 (294)
                      |++.+|+-..      .+-.-.|+|+.++.
T Consensus       121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hhcccCCccccccHHHHHHHHhhhhccccc
Confidence            9999987442      11123566665543

>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members

Probab=92.33  E-value=0.21  Score=30.79  Aligned_cols=38  Identities=13%  Similarity=-0.005  Sum_probs=31.4

Q ss_pred             CCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEe
Q 036679          244 LTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIK  283 (294)
Q Consensus       244 f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~  283 (294)
                      ..+||.+.+..  +.....-..++.++++.+|.||+++|+
T Consensus        13 ~s~Lk~v~~~~--f~g~~~e~~f~~yil~na~~Lk~m~i~   50 (51)
T PF08387_consen   13 LSHLKFVEIKG--FRGEENELEFAKYILENAPVLKKMTIS   50 (51)
T ss_pred             hheeEEEEEEe--eeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence            47999999975  445555677899999999999999986

Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.

>smart00579 FBD domain in FBox and BRCT domain containing plant proteins

Probab=90.42  E-value=0.5  Score=31.36  Aligned_cols=41  Identities=15%  Similarity=0.027  Sum_probs=33.1

Q ss_pred             CCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEeeCCC
Q 036679          245 TYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCNDC  287 (294)
Q Consensus       245 ~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~~~~~  287 (294)
                      .+||.+++..  +.....-..++..+|+.+|.||++.|..++.
T Consensus         5 ~~Lk~v~i~~--f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~   45 (72)
T smart00579        5 SSLEVLEIKG--YRGTEEEKELVKYFLENAPCLKKLTISVETS   45 (72)
T ss_pred             heEEEEEEEe--ccCcHHHHHHHHHHHhcchhheEEEEEeecC
Confidence            5688899986  4445556778899999999999999988653

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=89.29  E-value=0.43  Score=25.27  Aligned_cols=23  Identities=39%  Similarity=0.484  Sum_probs=18.6

Q ss_pred             CCccEEEeeecccChHHHHHHHh
Q 036679           10 SSLRELGLFKCAANDEAIRDIVA   32 (294)
Q Consensus        10 ~~Lk~L~L~~~~~~~~~l~~~~~   32 (294)
                      ++|++|+|++|.+.+++...+..
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~~   24 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALAE   24 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHHH
Confidence            68999999999998877665543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=88.70  E-value=0.26  Score=22.79  Aligned_cols=13  Identities=31%  Similarity=0.319  Sum_probs=6.5

Q ss_pred             CCccEEEeeeccc
Q 036679           10 SSLRELGLFKCAA   22 (294)
Q Consensus        10 ~~Lk~L~L~~~~~   22 (294)
                      ++||.|+|++|.+
T Consensus         1 ~~L~~L~l~~n~L   13 (17)
T PF13504_consen    1 PNLRTLDLSNNRL   13 (17)
T ss_dssp             TT-SEEEETSS--
T ss_pred             CccCEEECCCCCC
Confidence            4566666666654

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=82.79  E-value=1.4  Score=39.51  Aligned_cols=23  Identities=35%  Similarity=0.241  Sum_probs=17.8

Q ss_pred             CC-CCCCCCCCccEEEeeecccCh
Q 036679            2 SP-TRNVTLSSLRELGLFKCAAND   24 (294)
Q Consensus         2 ~p-~~~~~l~~Lk~L~L~~~~~~~   24 (294)
                      || .....+++||.|+|++|.|+.
T Consensus        82 iP~~aF~~l~~LRrLdLS~N~Is~  105 (498)
T KOG4237|consen   82 IPPGAFKTLHRLRRLDLSKNNISF  105 (498)
T ss_pred             CChhhccchhhhceecccccchhh
Confidence            56 344778999999999998753

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=81.14  E-value=1.2  Score=21.92  Aligned_cols=9  Identities=44%  Similarity=0.715  Sum_probs=4.3

Q ss_pred             CcEEeeccc
Q 036679          127 LEYLEIFRC  135 (294)
Q Consensus       127 L~~L~l~~c  135 (294)
                      |+.|++++|
T Consensus         2 L~~Ldls~n   10 (22)
T PF00560_consen    2 LEYLDLSGN   10 (22)
T ss_dssp             ESEEEETSS
T ss_pred             ccEEECCCC
Confidence            444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	294
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-04

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 50.3 bits (120), Expect = 3e-07
 Identities = 23/153 (15%), Positives = 53/153 (34%), Gaps = 9/153 (5%)

Query: 9   LSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNED 68
              L  + ++     +E++  I      +   +++     + +  L L    + ++    
Sbjct: 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCK 436

Query: 69  RLARVSICGPNVRLVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLE 128
           +L R +       L D+   +           N++ + L  +  ++E L       P L+
Sbjct: 437 KLRRFAFYLRQGGLTDLGLSYI-----GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQ 491

Query: 129 YLEIFRC----MKIRSIKISSPYLKKLLVRFCN 157
            LE+  C      I +     P L+ L V+   
Sbjct: 492 KLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 50.3 bits (120), Expect = 3e-07
 Identities = 30/223 (13%), Positives = 70/223 (31%), Gaps = 20/223 (8%)

Query: 9   LSSLRELGLFKC---AANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFL-------NLGK 58
            +SL  L  +       + + +  I   C  +  +K+ D   L+ + F            
Sbjct: 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCG 250

Query: 59  LSKFMVRNEDRLARVSICGPNVRLVDISSLHAPCGINVA-LCKNLKELKLFKLSITNEWL 117
            S              +    +  + +S +       +      +++L L    +  E  
Sbjct: 251 GSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDH 310

Query: 118 CNQFSELPFLEYLEIFRCMKIRSIKI---SSPYLKKLLVRFCNKLYEFKLDTPNLSVFDY 174
           C    + P LE LE    +  R +++       LK+L +         + +   +S    
Sbjct: 311 CTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS---- 366

Query: 175 EGDMVSFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNH 217
           +  +++ +     L    + +   ++ N+ L      L  L  
Sbjct: 367 QRGLIALAQGCQEL--EYMAVYVSDITNESLESIGTYLKNLCD 407

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 29/154 (18%), Positives = 56/154 (36%), Gaps = 10/154 (6%)

Query: 9   LSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFL--NLGKLSKFMVRN 66
            + +R+L L       E    ++  CP +E L+  +  G + LE L     +L +  +  
Sbjct: 292 AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER 351

Query: 67  EDRLARVSICGPNVRLVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPF 126
                 +      V    + +L          C+ L+ + ++   ITNE L +  + L  
Sbjct: 352 GADEQGMEDEEGLVSQRGLIAL-------AQGCQELEYMAVYVSDITNESLESIGTYLKN 404

Query: 127 LEYLEIFRCMKIRSIK-ISSPYLKKLLVRFCNKL 159
           L    +    +   I  +      + L+  C KL
Sbjct: 405 LCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL 438

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 3e-05
 Identities = 51/307 (16%), Positives = 105/307 (34%), Gaps = 89/307 (28%)

Query: 18  FKCAANDEAIRDIVAGCPLIER--LKIIDCRGLKSLEFLNLGKLSK----FMVRNEDRLA 71
           F+   +    +DI+    + E   +   DC+ +   +      LSK     ++ ++D ++
Sbjct: 9   FETGEHQYQYKDIL---SVFEDAFVDNFDCKDV--QDMPK-SILSKEEIDHIIMSKDAVS 62

Query: 72  RVSICGPNVRLVDISSLHAPCGINVALC-KNLKELKLF---KLSITNEWLCNQFSE---- 123
                   +RL               L  K  + ++ F    L I  ++L +        
Sbjct: 63  GT------LRLFWT------------LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104

Query: 124 --LPFLEYLEIFRCMKIRSIKISSPYL---KKLLVRFCNKLYEFKLDTPNLSVFDYEGDM 178
             +    Y+E  R       ++ + Y     +  ++    L E +    N+ +    G +
Sbjct: 105 PSMMTRMYIE-QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR-PAKNVLID---G-V 158

Query: 179 VSFSSNALALSETSLCLDS---INVDNQ--WL--------VKFIELLAKLNH--CSNVLN 223
           +      +AL    +CL       +D +  WL           +E+L KL +    N  +
Sbjct: 159 LGSGKTWVALD---VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215

Query: 224 LECYAAAIIPR------ELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHA 277
              +++ I  R      ELR +L S   YEN  C ++            L ++   +   
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKP-YEN--CLLV------------LLNV-QNAKAW 259

Query: 278 ETLSIKC 284
              ++ C
Sbjct: 260 NAFNLSC 266

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 9e-05
 Identities = 54/310 (17%), Positives = 96/310 (30%), Gaps = 82/310 (26%)

Query: 1   DSPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLK-----SLEFLN 55
           D P   +T +  R L +       E+IRD +A     +  K ++C  L      SL  L 
Sbjct: 317 DLPREVLTTNPRR-LSIIA-----ESIRDGLA---TWDNWKHVNCDKLTTIIESSLNVLE 367

Query: 56  LGKLSK----FMVRNEDRLARVSICGPNVRLVDISSLHAPCGINVALCKNLKEL------ 105
             +  K      V                    I     P  +   +  ++ +       
Sbjct: 368 PAEYRKMFDRLSVFPPS--------------AHI-----PTILLSLIWFDVIKSDVMVVV 408

Query: 106 -KLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISSPYLKKLLVRFCNKLYEFKL 164
            KL K S+  +        +P + YLE+   +K+ +       L + +V   N    F  
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSI-YLEL--KVKLEN----EYALHRSIVDHYNIPKTFDS 461

Query: 165 DTPNLSVFD-----YEGDMVSFSSNALALSE-TSLCLDSINVDNQWLVKFIELLAKLNHC 218
           D       D     + G  +    +   ++    + LD          +F+E   K+ H 
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD---------FRFLE--QKIRHD 510

Query: 219 SNVLNLECYAAAIIPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAE 278
           S   N            +   L     Y+ ++C   N         +L++++L   P  E
Sbjct: 511 STAWNA--------SGSILNTLQQLKFYKPYIC--DNDPKYE----RLVNAILDFLPKIE 556

Query: 279 TLSIKCNDCD 288
              I     D
Sbjct: 557 ENLICSKYTD 566

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 43.3 bits (102), Expect = 5e-05
 Identities = 33/161 (20%), Positives = 66/161 (40%), Gaps = 21/161 (13%)

Query: 9   LSSLRELGLFKCAA-NDEAIRDIVAGCPLIERLKIIDC-------------RGLKSLEFL 54
            S+L  L L  C+  ++ A++ +++ C  ++ L +  C                +++  L
Sbjct: 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200

Query: 55  NLGKLSKFMVRNEDRLARVSICGPNVRLVDIS---SLHAPCGINVALCKNLKELKLFK-L 110
           NL    K +   +  L+ +    PN+  +D+S    L   C         L+ L L +  
Sbjct: 201 NLSGYRKNL--QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258

Query: 111 SITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISSPYLKKL 151
            I  E L     E+P L+ L++F  +   ++++    L  L
Sbjct: 259 DIIPETLLE-LGEIPTLKTLQVFGIVPDGTLQLLKEALPHL 298

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 27/177 (15%), Positives = 59/177 (33%), Gaps = 32/177 (18%)

Query: 8   TLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCR----------GLKSLEFLNLG 57
           +   ++ + L         +  I++ C  ++ L +   R             +L  LNL 
Sbjct: 91  SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150

Query: 58  KLSKFMVRNEDRLARVSICGPNVRLVDISSLHAPC------GINVAL---CKNLKELKLF 108
             S F   +E  L  +      +  +++S     C       + VA+    + + +L L 
Sbjct: 151 GCSGF---SEFALQTLLSSCSRLDELNLSW----CFDFTEKHVQVAVAHVSETITQLNLS 203

Query: 109 KLS--ITNEWLCNQFSELPFLEYLEIFRCMKI--RSIKI--SSPYLKKLLVRFCNKL 159
                +    L       P L +L++   + +     +      YL+ L +  C  +
Sbjct: 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 260

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 46/226 (20%), Positives = 77/226 (34%), Gaps = 28/226 (12%)

Query: 9   LSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGL------------KSLEFLNL 56
            + L E+ L +    D+ +  I       + L +  C G             ++L+ L+L
Sbjct: 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL 163

Query: 57  GKLSKFMVRNEDRLARVSICGPNVRLVDISSLHAPCGIN-----VALCKNLKELKLFKLS 111
            + S     +   L+       ++  ++IS L +    +     V  C NLK LKL + +
Sbjct: 164 RE-SDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR-A 221

Query: 112 ITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISSPYLKKLLVRFCNKLYEFKLDTPNLSV 171
           +  E L       P LE L            + S     L    C +L         LS 
Sbjct: 222 VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL--SGCKEL-------RCLSG 272

Query: 172 FDYEGDMVSFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNH 217
           F         +  ++    T+L L    V +  LVK +    KL  
Sbjct: 273 FWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQR 318

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 26/180 (14%), Positives = 54/180 (30%), Gaps = 31/180 (17%)

Query: 9   LSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDC----------RGLKSLEFLNLGK 58
            S L  L L         +  ++  CP ++RL ++D              K L  L +  
Sbjct: 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFP 347

Query: 59  LSKFMVRNEDRLARVSICGPNVRLVDISSLHAPC-GIN----VALCKNLKELKLFKLSIT 113
              F++     L    +   ++    + S+   C  +     + + +N   +  F+L I 
Sbjct: 348 SEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCII 407

Query: 114 NEWLCNQFSEL-------------PFLEYLEIFRCM---KIRSIKISSPYLKKLLVRFCN 157
                +  +                 L  L +   +       I   +  ++ L V F  
Sbjct: 408 EPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAG 467

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	294
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.65
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.65
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.64
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.63
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.62
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.62
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.61
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.61
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.59
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.59
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.58
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.58
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.58
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.57
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.55
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.54
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.54
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.54
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.53
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.53
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.52
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.52
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.52
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.51
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.51
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.5
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.49
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.49
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.49
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.48
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.48
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.48
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.47
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.47
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.46
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.46
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.43
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.42
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.4
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.4
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.39
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.39
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.38
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.37
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.37
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.35
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.35
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.35
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.35
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.35
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.34
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.34
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.32
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.32
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.32
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.31
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.31
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.3
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.3
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.3
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.28
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.28
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.27
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.26
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.25
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.24
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.23
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.22
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.22
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.21
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.2
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.2
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.2
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.19
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.17
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.16
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.15
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.13
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.96
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.93
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.91
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.87
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.81
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.79
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.79
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.7
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.7
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.68
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.64
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.6
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.6
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.59
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.58
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.55
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.55
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.52
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.49
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.44
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.42
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.35
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.35
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.34
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.34
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.32
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.28
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.28
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.27
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.22
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.21
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.16
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.15
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.12
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.99
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.79
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.56
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.5
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.48
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.47
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.46
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.27
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.2
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.06
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.84
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.39
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.59
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.58
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.26
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.26
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	93.23
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	92.67
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	82.28
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	82.06

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.65  E-value=1.3e-15  Score=133.62  Aligned_cols=251  Identities=14%  Similarity=0.062  Sum_probs=145.3

Q ss_pred             CCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccC--CcccccccCCcccE
Q 036679            6 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNED--RLARVSICGPNVRL   82 (294)
Q Consensus         6 ~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~   82 (294)
                      +..+++|++|++++|.+++-.  . +..+++|++|++++|. +..+ .+.++++|++|+++++.  .+.. ....++|+.
T Consensus        62 ~~~~~~L~~L~l~~n~i~~~~--~-~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~  136 (347)
T 4fmz_A           62 IEYLTNLEYLNLNGNQITDIS--P-LSNLVKLTNLYIGTNK-ITDISALQNLTNLRELYLNEDNISDISP-LANLTKMYS  136 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred             hhhcCCccEEEccCCccccch--h-hhcCCcCCEEEccCCc-ccCchHHcCCCcCCEEECcCCcccCchh-hccCCceeE
Confidence            567899999999999886522  1 7889999999999884 3333 25677889999988875  2222 235678888


Q ss_pred             EEeeCCC-CCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec-cc-ccccceEEeecccCc
Q 036679           83 VDISSLH-APCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK-IS-SPYLKKLLVRFCNKL  159 (294)
Q Consensus        83 L~l~~c~-~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~-i~-~~~L~~L~l~~c~~l  159 (294)
                      |++++|. ......+..+++|++|++.++.+.+..  . +..+++|+.|++++|. ++.+. .. .++|+.+++.++...
T Consensus       137 L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~  212 (347)
T 4fmz_A          137 LNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT--P-IANLTDLYSLSLNYNQ-IEDISPLASLTSLHYFTAYVNQIT  212 (347)
T ss_dssp             EECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GGGCTTCSEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             EECCCCCCcccccchhhCCCCcEEEecCCCcCCch--h-hccCCCCCEEEccCCc-ccccccccCCCccceeecccCCCC
Confidence            8888885 222233567778888888887765422  1 5667888888887764 33332 12 256777777666432


Q ss_pred             eee-eccCCCccEEEEcCceee---eecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEEeeeeeeecchh
Q 036679          160 YEF-KLDTPNLSVFDYEGDMVS---FSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAIIPRE  235 (294)
Q Consensus       160 ~~~-~~~~p~L~~l~~~g~~~~---~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~~~p~~  235 (294)
                      ... ....++|+++++.++...   .+...++|+.+.+....+...        +.+..+++++. |.++.+....++. 
T Consensus       213 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~l~~L~~-L~l~~n~l~~~~~-  282 (347)
T 4fmz_A          213 DITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI--------NAVKDLTKLKM-LNVGSNQISDISV-  282 (347)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--------GGGTTCTTCCE-EECCSSCCCCCGG-
T ss_pred             CCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC--------hhHhcCCCcCE-EEccCCccCCChh-
Confidence            211 124566777777666541   133445566665522111110        12344555555 3554443333321 


Q ss_pred             hhhccCCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEeeCC
Q 036679          236 LREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCND  286 (294)
Q Consensus       236 ~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~~~~  286 (294)
                           ...+++|++|.+..+.....      ....+..+|+|++|.+...+
T Consensus       283 -----~~~l~~L~~L~L~~n~l~~~------~~~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          283 -----LNNLSQLNSLFLNNNQLGNE------DMEVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             -----GGGCTTCSEEECCSSCCCGG------GHHHHHTCTTCSEEECCSSS
T ss_pred             -----hcCCCCCCEEECcCCcCCCc------ChhHhhccccCCEEEccCCc
Confidence                 23445666666665322111      11124455666666666543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.65  E-value=2e-15  Score=132.41  Aligned_cols=252  Identities=13%  Similarity=0.090  Sum_probs=132.2

Q ss_pred             CCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCCcccc--cccCCcccEE
Q 036679            6 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARV--SICGPNVRLV   83 (294)
Q Consensus         6 ~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~l~~~--~~~~~~L~~L   83 (294)
                      ...+++|++|++++|.+++  ++ .+..+++|++|++++|.--..-.+..+++|++|++++|.....+  ...+++|+.|
T Consensus        84 ~~~l~~L~~L~L~~n~i~~--~~-~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L  160 (347)
T 4fmz_A           84 LSNLVKLTNLYIGTNKITD--IS-ALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL  160 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCC--CG-GGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEE
T ss_pred             hhcCCcCCEEEccCCcccC--ch-HHcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEE
Confidence            4556777777777776643  11 25667777777777664211112455667777777766533222  1245667777


Q ss_pred             EeeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec-ccc-cccceEEeecccCcee
Q 036679           84 DISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK-ISS-PYLKKLLVRFCNKLYE  161 (294)
Q Consensus        84 ~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~-i~~-~~L~~L~l~~c~~l~~  161 (294)
                      ++++|.......+..+++|++|+++++.+++.  .. +..+++|+.|+++++. ++.+. +.. ++|++|++++|... .
T Consensus       161 ~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~n~l~-~  235 (347)
T 4fmz_A          161 TVTESKVKDVTPIANLTDLYSLSLNYNQIEDI--SP-LASLTSLHYFTAYVNQ-ITDITPVANMTRLNSLKIGNNKIT-D  235 (347)
T ss_dssp             ECCSSCCCCCGGGGGCTTCSEEECTTSCCCCC--GG-GGGCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCC-C
T ss_pred             EecCCCcCCchhhccCCCCCEEEccCCccccc--cc-ccCCCccceeecccCC-CCCCchhhcCCcCCEEEccCCccC-C
Confidence            77776533222355667777777777665542  11 4566777777776643 22222 222 56777777766532 2


Q ss_pred             ee--ccCCCccEEEEcCcee---eeecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEEeeeeeeecchhh
Q 036679          162 FK--LDTPNLSVFDYEGDMV---SFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAIIPREL  236 (294)
Q Consensus       162 ~~--~~~p~L~~l~~~g~~~---~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~~~p~~~  236 (294)
                      ++  ...++|+++++.++..   ..+...++|+.+.+....+...        ..+..+++++. |+++.+.....+...
T Consensus       236 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~l~~L~~-L~L~~n~l~~~~~~~  306 (347)
T 4fmz_A          236 LSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI--------SVLNNLSQLNS-LFLNNNQLGNEDMEV  306 (347)
T ss_dssp             CGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--------GGGGGCTTCSE-EECCSSCCCGGGHHH
T ss_pred             CcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC--------hhhcCCCCCCE-EECcCCcCCCcChhH
Confidence            22  2456677777766644   1233445566665522111110        12445566666 355544333222221


Q ss_pred             hhccCCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEeeCC
Q 036679          237 REILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCND  286 (294)
Q Consensus       237 ~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~~~~  286 (294)
                          ...+++|++|.+..+.....      ..  +..+|.|++|.+...+
T Consensus       307 ----l~~l~~L~~L~L~~n~l~~~------~~--~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          307 ----IGGLTNLTTLFLSQNHITDI------RP--LASLSKMDSADFANQV  344 (347)
T ss_dssp             ----HHTCTTCSEEECCSSSCCCC------GG--GGGCTTCSEESSSCC-
T ss_pred             ----hhccccCCEEEccCCccccc------cC--hhhhhccceeehhhhc
Confidence                22356677777765422111      11  5566777777665543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.64  E-value=2.1e-16  Score=144.69  Aligned_cols=261  Identities=18%  Similarity=0.099  Sum_probs=136.5

Q ss_pred             CCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccCC--cc-cccccCC
Q 036679            5 RNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDR--LA-RVSICGP   78 (294)
Q Consensus         5 ~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~~--l~-~~~~~~~   78 (294)
                      .+.++++|++|+|++|.+++. .+..+.++++|++|+++++. +..+.   +.++++|++|+++++.-  +. .....++
T Consensus        51 ~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~  128 (477)
T 2id5_A           51 EFASFPHLEELELNENIVSAV-EPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY  128 (477)
T ss_dssp             TTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             HccCCCCCCEEECCCCccCEe-ChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhHccccc
Confidence            344455555555555544321 11224455555555555542 22221   23456666666666541  10 1112346


Q ss_pred             cccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc----ccccceEE
Q 036679           79 NVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYLKKLL  152 (294)
Q Consensus        79 ~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~~L~  152 (294)
                      +|+.|+++++....  +..+..+++|++|+++++.+++. ....+.++++|+.|+++++. +..+...    .++|++|+
T Consensus       129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~  206 (477)
T 2id5_A          129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI-PTEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLE  206 (477)
T ss_dssp             TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC-CHHHHTTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEE
T ss_pred             cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc-ChhHhcccCCCcEEeCCCCc-CcEeChhhcccCcccceee
Confidence            67777776665321  22455667777777777766542 23345667777777777754 3333221    15788888


Q ss_pred             eecccCceeeec---cCCCccEEEEcCceee-----eecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEE
Q 036679          153 VRFCNKLYEFKL---DTPNLSVFDYEGDMVS-----FSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNL  224 (294)
Q Consensus       153 l~~c~~l~~~~~---~~p~L~~l~~~g~~~~-----~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~  224 (294)
                      +++|..+..++.   ..++|++|++.++.+.     .+...++|+.+++....+....      ...+..+++|+. |.+
T Consensus       207 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~-L~L  279 (477)
T 2id5_A          207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE------GSMLHELLRLQE-IQL  279 (477)
T ss_dssp             EECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC------TTSCTTCTTCCE-EEC
T ss_pred             CCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccC------hhhccccccCCE-EEC
Confidence            887776655542   3347777777776541     2334556666666221110000      112344566666 466


Q ss_pred             eeeeeeecchhhhhccCCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEeeCC
Q 036679          225 ECYAAAIIPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCND  286 (294)
Q Consensus       225 ~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~~~~  286 (294)
                      +.+....++..    ....+++|++|.|..+....      +....+..+|.|++|.+...+
T Consensus       280 ~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          280 VGGQLAVVEPY----AFRGLNYLRVLNVSGNQLTT------LEESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             CSSCCSEECTT----TBTTCTTCCEEECCSSCCSC------CCGGGBSCGGGCCEEECCSSC
T ss_pred             CCCccceECHH----HhcCcccCCEEECCCCcCce------eCHhHcCCCcccCEEEccCCC
Confidence            55544444322    13456777777777643311      122345667788888877653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.63  E-value=1.5e-15  Score=142.51  Aligned_cols=97  Identities=20%  Similarity=0.221  Sum_probs=62.4

Q ss_pred             cccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceee---cccccccceEEeec--------ccCceee----
Q 036679           98 LCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSI---KISSPYLKKLLVRF--------CNKLYEF----  162 (294)
Q Consensus        98 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l---~i~~~~L~~L~l~~--------c~~l~~~----  162 (294)
                      .+++|++|+++++.+++..+..++.+|++|+.|++.+|..-..+   ....++|++|++.+        |..+++.    
T Consensus       287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~  366 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS  366 (594)
T ss_dssp             HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHH
T ss_pred             hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHH
Confidence            46789999999988888778888888999999999987221111   11247888898844        3333321    


Q ss_pred             -eccCCCccEEEEcCcee-----eee-cCccccceEEEE
Q 036679          163 -KLDTPNLSVFDYEGDMV-----SFS-SNALALSETSLC  194 (294)
Q Consensus       163 -~~~~p~L~~l~~~g~~~-----~~~-~~~~~L~~~~i~  194 (294)
                       ...+|+|+++.+.+..+     ... ..+++|+.+++.
T Consensus       367 l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~  405 (594)
T 2p1m_B          367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC  405 (594)
T ss_dssp             HHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred             HHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence             12467888886554433     111 135667777773

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.62  E-value=2.7e-16  Score=142.91  Aligned_cols=103  Identities=10%  Similarity=0.042  Sum_probs=56.0

Q ss_pred             CCCccEEEEcCceee-----eecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEEeeeeeeec-chhhhhc
Q 036679          166 TPNLSVFDYEGDMVS-----FSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAII-PRELREI  239 (294)
Q Consensus       166 ~p~L~~l~~~g~~~~-----~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~~~-p~~~~~~  239 (294)
                      .++|++|+++++.+.     .+...++|+.+.+....+...      ....++.+++|+. |+++.+....+ |..    
T Consensus       298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~-L~Ls~N~l~~~~~~~----  366 (455)
T 3v47_A          298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI------DSRMFENLDKLEV-LDLSYNHIRALGDQS----  366 (455)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE------CGGGGTTCTTCCE-EECCSSCCCEECTTT----
T ss_pred             CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCc------ChhHhcCcccCCE-EECCCCcccccChhh----
Confidence            456777777666441     223445566665522111000      0123455666666 46665555444 333    


Q ss_pred             cCCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEeeCC
Q 036679          240 LSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCND  286 (294)
Q Consensus       240 ~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~~~~  286 (294)
                       ...+++|++|.+..|....      +....+..+|.|++|.+...+
T Consensus       367 -~~~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          367 -FLGLPNLKELALDTNQLKS------VPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             -TTTCTTCCEEECCSSCCSC------CCTTTTTTCTTCCEEECCSSC
T ss_pred             -ccccccccEEECCCCcccc------CCHhHhccCCcccEEEccCCC
Confidence             4456788888887643321      122345777888888887754

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.62  E-value=3.8e-15  Score=139.72  Aligned_cols=40  Identities=5%  Similarity=-0.129  Sum_probs=23.3

Q ss_pred             CCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEeeCCC
Q 036679          243 PLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCNDC  287 (294)
Q Consensus       243 ~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~~~~~  287 (294)
                      .+++|++|+|+.+..   .+  ..+..+.+.+|+|+.|.+.....
T Consensus       486 ~~~~L~~L~l~~n~l---~~--~~~~~~~~~l~~L~~L~ls~n~i  525 (592)
T 3ogk_B          486 GCPNLQKLEMRGCCF---SE--RAIAAAVTKLPSLRYLWVQGYRA  525 (592)
T ss_dssp             CCTTCCEEEEESCCC---BH--HHHHHHHHHCSSCCEEEEESCBC
T ss_pred             cCcccCeeeccCCCC---cH--HHHHHHHHhcCccCeeECcCCcC
Confidence            346777777776321   11  12333456677888887776543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.61  E-value=3.1e-15  Score=144.79  Aligned_cols=187  Identities=16%  Similarity=0.076  Sum_probs=106.5

Q ss_pred             CCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCCccc----ccccCCccc
Q 036679            6 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLAR----VSICGPNVR   81 (294)
Q Consensus         6 ~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~l~~----~~~~~~~L~   81 (294)
                      +..+++|++|+|++|.+++. ++..+..+++|++|++++|.-........+++|++|++++|.-...    +...+++|+
T Consensus       219 l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~  297 (768)
T 3rgz_A          219 LGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLT  297 (768)
T ss_dssp             CTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCS
T ss_pred             cccCCCCCEEECcCCcCCCc-ccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCC
Confidence            56677777777777766532 3344567777777777776422222222457777887777651111    111247788


Q ss_pred             EEEeeCCCC--CcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccc---c-ccceEEeec
Q 036679           82 LVDISSLHA--PCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISS---P-YLKKLLVRF  155 (294)
Q Consensus        82 ~L~l~~c~~--~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~---~-~L~~L~l~~  155 (294)
                      .|++++|..  ..+..++.+++|++|+++++.+++..-...+.++++|+.|+++++.-...++...   + +|++|++++
T Consensus       298 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~  377 (768)
T 3rgz_A          298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS  377 (768)
T ss_dssp             EEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCS
T ss_pred             EEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccC
Confidence            888888763  2334567778888888888876643222336678888888888764322222111   2 677777776


Q ss_pred             ccCceeeec-----cCCCccEEEEcCceee-----eecCccccceEEE
Q 036679          156 CNKLYEFKL-----DTPNLSVFDYEGDMVS-----FSSNALALSETSL  193 (294)
Q Consensus       156 c~~l~~~~~-----~~p~L~~l~~~g~~~~-----~~~~~~~L~~~~i  193 (294)
                      |.....++.     ..++|+.+++.++...     .+...++|+.+++
T Consensus       378 N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  425 (768)
T 3rgz_A          378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL  425 (768)
T ss_dssp             SEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEEC
T ss_pred             CCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEEC
Confidence            653322221     1345666666665441     1223445555555

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.61  E-value=4.7e-15  Score=139.10  Aligned_cols=180  Identities=13%  Similarity=0.026  Sum_probs=109.7

Q ss_pred             cccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceee---cccccccceEEeec----------ccCceee
Q 036679           96 VALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSI---KISSPYLKKLLVRF----------CNKLYEF  162 (294)
Q Consensus        96 ~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l---~i~~~~L~~L~l~~----------c~~l~~~  162 (294)
                      +..+++|++|+++++.+++..+..++.+|++|+.|++.++..-..+   .-..++|++|++.+          |..++..
T Consensus       289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~  368 (592)
T 3ogk_B          289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR  368 (592)
T ss_dssp             GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH
T ss_pred             HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHH
Confidence            3456788888888888877777777788899999888743221111   11237899999985          7666532


Q ss_pred             -----eccCCCccEEEEcCcee-----eee-cCccccceEEEEEE----EeccChhHHHHHHHHHhcCcccceeEEEe--
Q 036679          163 -----KLDTPNLSVFDYEGDMV-----SFS-SNALALSETSLCLD----SINVDNQWLVKFIELLAKLNHCSNVLNLE--  225 (294)
Q Consensus       163 -----~~~~p~L~~l~~~g~~~-----~~~-~~~~~L~~~~i~~~----~~~~~~~~~~~~~~~l~~l~~l~~LL~~~--  225 (294)
                           ...+|+|+++.+....+     ..+ ..+++|+.+++...    .+... .....+..++.++++|+.| .++  
T Consensus       369 ~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~-p~~~~~~~~~~~~~~L~~L-~L~~~  446 (592)
T 3ogk_B          369 GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL-PLDNGVRSLLIGCKKLRRF-AFYLR  446 (592)
T ss_dssp             HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC-CCHHHHHHHHHHCTTCCEE-EEECC
T ss_pred             HHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc-hHHHHHHHHHHhCCCCCEE-EEecC
Confidence                 23578999998854433     111 23667888887311    11100 0112355667788999996 442  


Q ss_pred             ee-eeeecchhhhhccCCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEeeCC
Q 036679          226 CY-AAAIIPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCND  286 (294)
Q Consensus       226 ~~-~~~~~p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~~~~  286 (294)
                      .. .....+..+    ...+++|++|.+..+..   .+ . .+..+++.||+|++|.|...+
T Consensus       447 ~~~l~~~~~~~~----~~~~~~L~~L~L~~n~l---~~-~-~~~~~~~~~~~L~~L~l~~n~  499 (592)
T 3ogk_B          447 QGGLTDLGLSYI----GQYSPNVRWMLLGYVGE---SD-E-GLMEFSRGCPNLQKLEMRGCC  499 (592)
T ss_dssp             GGGCCHHHHHHH----HHSCTTCCEEEECSCCS---SH-H-HHHHHHTCCTTCCEEEEESCC
T ss_pred             CCCccHHHHHHH----HHhCccceEeeccCCCC---CH-H-HHHHHHhcCcccCeeeccCCC
Confidence            21 111122221    12357899999985322   21 1 245568899999999998865

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.59  E-value=2.5e-15  Score=131.14  Aligned_cols=174  Identities=13%  Similarity=0.179  Sum_probs=133.0

Q ss_pred             CCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCe---eccCCCCCccEEEccccCCccc-----cc
Q 036679            3 PTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKS---LEFLNLGKLSKFMVRNEDRLAR-----VS   74 (294)
Q Consensus         3 p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~---l~~~~l~~L~~L~l~~c~~l~~-----~~   74 (294)
                      +....++++|++|+|++|.+++..++..+..+++|++|++++|. +..   -.++.+++|++|++++|..+..     ..
T Consensus        86 ~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~  164 (336)
T 2ast_B           86 LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL  164 (336)
T ss_dssp             CCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred             chhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH
Confidence            34466789999999999999877788889999999999999985 321   1245689999999999964442     22


Q ss_pred             ccCCcccEEEeeCC-CCCc---cccccccc-ccceEEeccc--ccChHHHHHHhcCCCCCcEEeecccccceeecc---c
Q 036679           75 ICGPNVRLVDISSL-HAPC---GINVALCK-NLKELKLFKL--SITNEWLCNQFSELPFLEYLEIFRCMKIRSIKI---S  144 (294)
Q Consensus        75 ~~~~~L~~L~l~~c-~~~~---~~~~~~~~-~L~~L~L~~~--~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i---~  144 (294)
                      ..+++|++|++++| ....   +..+..++ +|++|+++++  .+++..++..+.++++|+.|++++|..++....   .
T Consensus       165 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~  244 (336)
T 2ast_B          165 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF  244 (336)
T ss_dssp             HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred             hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh
Confidence            35789999999999 6542   23456788 9999999999  677777888888899999999999875543221   1


Q ss_pred             -ccccceEEeecccCceee----eccCCCccEEEEcCc
Q 036679          145 -SPYLKKLLVRFCNKLYEF----KLDTPNLSVFDYEGD  177 (294)
Q Consensus       145 -~~~L~~L~l~~c~~l~~~----~~~~p~L~~l~~~g~  177 (294)
                       .++|++|++++|..+...    -..+|+|++|++.|+
T Consensus       245 ~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          245 QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence             278999999999755432    125788888888876

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.59  E-value=3.5e-15  Score=130.22  Aligned_cols=171  Identities=21%  Similarity=0.295  Sum_probs=78.2

Q ss_pred             CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee--ccCCCCCccEEEccccCCcccccc----
Q 036679            2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL--EFLNLGKLSKFMVRNEDRLARVSI----   75 (294)
Q Consensus         2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l--~~~~l~~L~~L~l~~c~~l~~~~~----   75 (294)
                      +|..+.++++|++|+|++|.++  .++..++.+++|++|++++|. +..+  .+.++++|++|++++|.....+..    
T Consensus        96 lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~  172 (328)
T 4fcg_A           96 FPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLAS  172 (328)
T ss_dssp             CCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE
T ss_pred             cChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEECCCCCCccccChhHhh
Confidence            3444555555555555555543  222234455555555555543 2222  133445555555555442222110    


Q ss_pred             --------cCCcccEEEeeCCCCC-cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc--
Q 036679           76 --------CGPNVRLVDISSLHAP-CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS--  144 (294)
Q Consensus        76 --------~~~~L~~L~l~~c~~~-~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~--  144 (294)
                              ..++|+.|++++|.+. .+..+..+++|++|+++++.+++  ++..+..+++|+.|++++|.....++..  
T Consensus       173 ~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~  250 (328)
T 4fcg_A          173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIFG  250 (328)
T ss_dssp             EC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEECTTCTTCCBCCCCTT
T ss_pred             ccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc--CchhhccCCCCCEEECcCCcchhhhHHHhc
Confidence                    1445555555555422 12234445555555555555442  2223444555555555555444333211  


Q ss_pred             -ccccceEEeecccCceeee---ccCCCccEEEEcCc
Q 036679          145 -SPYLKKLLVRFCNKLYEFK---LDTPNLSVFDYEGD  177 (294)
Q Consensus       145 -~~~L~~L~l~~c~~l~~~~---~~~p~L~~l~~~g~  177 (294)
                       .++|++|++++|...+.++   ...++|+.++++++
T Consensus       251 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n  287 (328)
T 4fcg_A          251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC  287 (328)
T ss_dssp             CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred             CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence             1455555555555444333   13445555555543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.58  E-value=4e-14  Score=129.26  Aligned_cols=251  Identities=16%  Similarity=0.089  Sum_probs=120.9

Q ss_pred             CCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccC--CcccccccCCcccEE
Q 036679            6 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNED--RLARVSICGPNVRLV   83 (294)
Q Consensus         6 ~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~L   83 (294)
                      +..+++|++|+|++|.+++-.  . +..+++|++|++++|.--....+.++++|++|++++|.  .+.. ...+++|++|
T Consensus        64 ~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L  139 (466)
T 1o6v_A           64 VEYLNNLTQINFSNNQLTDIT--P-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRL  139 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred             hhhhcCCCEEECCCCccCCch--h-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH-HcCCCCCCEE
Confidence            455677777777777665421  1 56677777777776642211124556667777776664  2211 1234566666


Q ss_pred             EeeCCCCCccccc---------------------ccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec
Q 036679           84 DISSLHAPCGINV---------------------ALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK  142 (294)
Q Consensus        84 ~l~~c~~~~~~~~---------------------~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~  142 (294)
                      ++++|.......+                     ..+++|++|+++++.+++.  . .+..+++|+.|+++++.--....
T Consensus       140 ~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~l~~n~l~~~~~  216 (466)
T 1o6v_A          140 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--S-VLAKLTNLESLIATNNQISDITP  216 (466)
T ss_dssp             EEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCCCGG
T ss_pred             ECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--h-hhccCCCCCEEEecCCccccccc
Confidence            6666542211122                     3334444444444443321  1 13344455555554432111111


Q ss_pred             cc-ccccceEEeecccCceeee--ccCCCccEEEEcCcee---eeecCccccceEEEEEEEeccChhHHHHHHHHHhcCc
Q 036679          143 IS-SPYLKKLLVRFCNKLYEFK--LDTPNLSVFDYEGDMV---SFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLN  216 (294)
Q Consensus       143 i~-~~~L~~L~l~~c~~l~~~~--~~~p~L~~l~~~g~~~---~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~  216 (294)
                      .. .++|+.|++++|. ++.++  ...++|+.++++++..   ..+...++|+.+.+....+...       .. +..++
T Consensus       217 ~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-------~~-~~~l~  287 (466)
T 1o6v_A          217 LGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI-------SP-LAGLT  287 (466)
T ss_dssp             GGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCC-------GG-GTTCT
T ss_pred             ccccCCCCEEECCCCC-cccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcc-------cc-ccCCC
Confidence            11 1455555555543 22221  2345666666665543   1123344555555521111110       11 34556


Q ss_pred             ccceeEEEeeeeeeecchhhhhccCCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEeeCCC
Q 036679          217 HCSNVLNLECYAAAIIPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCNDC  287 (294)
Q Consensus       217 ~l~~LL~~~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~~~~~  287 (294)
                      +|+. |.++.+....++.      ...+++|++|.+..+.....   .   .  +..+|+|++|.+.....
T Consensus       288 ~L~~-L~L~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~---~---~--~~~l~~L~~L~l~~n~l  343 (466)
T 1o6v_A          288 ALTN-LELNENQLEDISP------ISNLKNLTYLTLYFNNISDI---S---P--VSSLTKLQRLFFYNNKV  343 (466)
T ss_dssp             TCSE-EECCSSCCSCCGG------GGGCTTCSEEECCSSCCSCC---G---G--GGGCTTCCEEECCSSCC
T ss_pred             ccCe-EEcCCCcccCchh------hcCCCCCCEEECcCCcCCCc---h---h--hccCccCCEeECCCCcc
Confidence            6666 3555444433332      23456777777776433111   1   1  46778888888876543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.58  E-value=4.5e-15  Score=143.62  Aligned_cols=191  Identities=17%  Similarity=0.143  Sum_probs=118.2

Q ss_pred             CCCCCCCCCCccEEEeeecccChHHHH-HHHhcCCCCCEEEEEcCCC--------------CCeec--------------
Q 036679            2 SPTRNVTLSSLRELGLFKCAANDEAIR-DIVAGCPLIERLKIIDCRG--------------LKSLE--------------   52 (294)
Q Consensus         2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~-~~~~~~~~Le~L~L~~c~~--------------l~~l~--------------   52 (294)
                      +|..+.++++|++|+|++|.+++.... ..++.+++|++|++++|.-              |+.++              
T Consensus        92 l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  171 (768)
T 3rgz_A           92 SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW  171 (768)
T ss_dssp             CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHH
T ss_pred             CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhh
Confidence            467888999999999999988642221 1478899999999988741              12221              


Q ss_pred             --cCCCCCccEEEccccCCcccc-cccCCcccEEEeeCCCCCc-ccccccccccceEEecccccChHHHHHHhcCCCCCc
Q 036679           53 --FLNLGKLSKFMVRNEDRLARV-SICGPNVRLVDISSLHAPC-GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLE  128 (294)
Q Consensus        53 --~~~l~~L~~L~l~~c~~l~~~-~~~~~~L~~L~l~~c~~~~-~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~  128 (294)
                        +.++++|++|++++|.-.... ...+++|++|++++|.... ...++.+++|++|+++++.+++. ++..+.++++|+
T Consensus       172 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~  250 (768)
T 3rgz_A          172 VLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD-FSRAISTCTELK  250 (768)
T ss_dssp             HHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCC
T ss_pred             hhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCc-ccHHHhcCCCCC
Confidence              122344444444444310000 1245678888888776321 12267888999999999888764 566678899999


Q ss_pred             EEeecccccceeecc-cccccceEEeecccCceeeec----cCCCccEEEEcCceee-----eecCccccceEEE
Q 036679          129 YLEIFRCMKIRSIKI-SSPYLKKLLVRFCNKLYEFKL----DTPNLSVFDYEGDMVS-----FSSNALALSETSL  193 (294)
Q Consensus       129 ~L~l~~c~~l~~l~i-~~~~L~~L~l~~c~~l~~~~~----~~p~L~~l~~~g~~~~-----~~~~~~~L~~~~i  193 (294)
                      .|++++|.-...++. ..++|++|++++|.....++.    .+++|+++++.++...     .+...++|+.+.+
T Consensus       251 ~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  325 (768)
T 3rgz_A          251 LLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL  325 (768)
T ss_dssp             EEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEEC
T ss_pred             EEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEEC
Confidence            999998754332222 226788888877763322221    1367777777766541     1234455666655

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.58  E-value=3.2e-14  Score=129.94  Aligned_cols=56  Identities=21%  Similarity=0.064  Sum_probs=27.0

Q ss_pred             CCcccEEEeeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeeccc
Q 036679           77 GPNVRLVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRC  135 (294)
Q Consensus        77 ~~~L~~L~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c  135 (294)
                      +++|+.|++++|.......+..+++|++|+++++.+++..  . +..+++|+.|+++++
T Consensus       176 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~l~~n  231 (466)
T 1o6v_A          176 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT--P-LGILTNLDELSLNGN  231 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG--G-GGGCTTCCEEECCSS
T ss_pred             CCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccc--c-ccccCCCCEEECCCC
Confidence            3455566665554322223445555555555555544321  1 334555555555553

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.57  E-value=1.2e-14  Score=129.55  Aligned_cols=127  Identities=12%  Similarity=0.102  Sum_probs=83.0

Q ss_pred             CCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccC--Cccc-ccccCCcc
Q 036679            7 VTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNED--RLAR-VSICGPNV   80 (294)
Q Consensus         7 ~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~--~l~~-~~~~~~~L   80 (294)
                      ..++++++|+++++.+.. ....++..+++|++|+++++. +..+   .+.++++|++|+++++.  .+.. .....++|
T Consensus        42 ~~l~~l~~l~l~~~~l~~-l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  119 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  119 (390)
T ss_dssp             GGGCCCSEEEEESCEESE-ECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cccCCceEEEecCCchhh-CChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence            457889999999887743 223456778999999998874 4433   34567788888888775  1211 11245778


Q ss_pred             cEEEeeCCCCCc-c-cccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccc
Q 036679           81 RLVDISSLHAPC-G-INVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCM  136 (294)
Q Consensus        81 ~~L~l~~c~~~~-~-~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~  136 (294)
                      +.|++++|.... + ..+..+++|++|+++++.+++. ....+.++++|+.|+++++.
T Consensus       120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~  176 (390)
T 3o6n_A          120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSSNR  176 (390)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTSSCTTCCEEECCSSC
T ss_pred             CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCcc-ChhhccCCCCCCEEECCCCc
Confidence            888888876331 2 2246677888888887776542 22335667788888877643

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.55  E-value=6.6e-15  Score=138.04  Aligned_cols=38  Identities=29%  Similarity=0.405  Sum_probs=28.6

Q ss_pred             CCCCccEEEeeecc--cChHHHHHHHhcCCCCCEEEEEcC
Q 036679            8 TLSSLRELGLFKCA--ANDEAIRDIVAGCPLIERLKIIDC   45 (294)
Q Consensus         8 ~l~~Lk~L~L~~~~--~~~~~l~~~~~~~~~Le~L~L~~c   45 (294)
                      .+++|++|++++|.  ++++.+..++..+++|++|++++|
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            56678888887774  556777777777888888888877

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.54  E-value=2.6e-14  Score=124.61  Aligned_cols=172  Identities=19%  Similarity=0.196  Sum_probs=132.4

Q ss_pred             CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec-----------cCCCCCccEEEccccC--
Q 036679            2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE-----------FLNLGKLSKFMVRNED--   68 (294)
Q Consensus         2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~-----------~~~l~~L~~L~l~~c~--   68 (294)
                      +|..+..+++|++|+|++|.++  .++..+..+++|++|++++|..+..+.           +.++++|++|++++|.  
T Consensus       119 lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~  196 (328)
T 4fcg_A          119 LPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR  196 (328)
T ss_dssp             CCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC
T ss_pred             hhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC
Confidence            6888899999999999999886  445558899999999999987654442           1237899999999985  


Q ss_pred             CcccccccCCcccEEEeeCCCCC-cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc---
Q 036679           69 RLARVSICGPNVRLVDISSLHAP-CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS---  144 (294)
Q Consensus        69 ~l~~~~~~~~~L~~L~l~~c~~~-~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~---  144 (294)
                      .+.......++|+.|++++|... .+..+..+++|++|++++|.+.+. ++..+.++++|+.|++++|.....++..   
T Consensus       197 ~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~  275 (328)
T 4fcg_A          197 SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLTLPLDIHR  275 (328)
T ss_dssp             CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCB-CCCCTTCCCCCCEEECTTCTTCCBCCTTGGG
T ss_pred             cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhh-hHHHhcCCCCCCEEECCCCCchhhcchhhhc
Confidence            22222235789999999999843 234577889999999999876653 4555778999999999999877766533   


Q ss_pred             ccccceEEeecccCceeeec---cCCCccEEEEcC
Q 036679          145 SPYLKKLLVRFCNKLYEFKL---DTPNLSVFDYEG  176 (294)
Q Consensus       145 ~~~L~~L~l~~c~~l~~~~~---~~p~L~~l~~~g  176 (294)
                      .++|++|++++|..++.++-   ..++|+.+.+..
T Consensus       276 l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          276 LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             CTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred             CCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence            27999999999998877663   456676666554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.54  E-value=4.1e-14  Score=128.66  Aligned_cols=78  Identities=17%  Similarity=0.067  Sum_probs=43.8

Q ss_pred             HHHHHhcCcccceeEEEeeeeeeec-chhhhhccCCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEeeCC
Q 036679          208 FIELLAKLNHCSNVLNLECYAAAII-PRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCND  286 (294)
Q Consensus       208 ~~~~l~~l~~l~~LL~~~~~~~~~~-p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~~~~  286 (294)
                      +...+..+++++.| +++.+..... +..+........++|++|.+..+... ..+ +..+...+..+|+|++|.+....
T Consensus       333 l~~~l~~~~~L~~L-~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~-~~~-~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          333 FSSVLAQNRFLLEL-QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS-DSS-CSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             HHHHHHHCSSCCEE-ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC-HHH-HHHHHHHHHHCCCCCEEECCSSS
T ss_pred             HHHHHhhCCCccEE-EccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC-hhh-HHHHHHHHHhCCCccEEECCCCC
Confidence            45556667777774 6655433221 22222222223568888888764332 112 22344557778999999887765


Q ss_pred             CC
Q 036679          287 CD  288 (294)
Q Consensus       287 ~~  288 (294)
                      .+
T Consensus       410 i~  411 (461)
T 1z7x_W          410 LG  411 (461)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.54  E-value=6.3e-15  Score=134.83  Aligned_cols=240  Identities=18%  Similarity=0.152  Sum_probs=169.9

Q ss_pred             CCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccC--Cccc-cccc
Q 036679            3 PTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNED--RLAR-VSIC   76 (294)
Q Consensus         3 p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~--~l~~-~~~~   76 (294)
                      |..+.++++|++|+|++|.++. .....+.++++|++|+++++. +..+   .+.++++|++|+++++.  .+.. ....
T Consensus        73 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  150 (477)
T 2id5_A           73 PGAFNNLFNLRTLGLRSNRLKL-IPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG  150 (477)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCS-CCTTSSTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTT
T ss_pred             hhhhhCCccCCEEECCCCcCCc-cCcccccCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCCccceeChhhccC
Confidence            6677889999999999998753 122346789999999999985 3332   35678999999999875  1111 1225


Q ss_pred             CCcccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccc---cccceE
Q 036679           77 GPNVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISS---PYLKKL  151 (294)
Q Consensus        77 ~~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~---~~L~~L  151 (294)
                      +++|+.|++++|....  ...+..+++|+.|++.++.+.+. ....+..+++|+.|++++|..+..+....   .+|++|
T Consensus       151 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  229 (477)
T 2id5_A          151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI-RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL  229 (477)
T ss_dssp             CTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE-CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEE
T ss_pred             CCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe-ChhhcccCcccceeeCCCCccccccCcccccCccccEE
Confidence            6899999999997432  23467889999999999987653 22346789999999999988777765433   589999


Q ss_pred             EeecccCceeee----ccCCCccEEEEcCcee-----eeecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeE
Q 036679          152 LVRFCNKLYEFK----LDTPNLSVFDYEGDMV-----SFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVL  222 (294)
Q Consensus       152 ~l~~c~~l~~~~----~~~p~L~~l~~~g~~~-----~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL  222 (294)
                      ++++|. ++.++    ...++|+.|+++++.+     ..+...++|+.+.+.-..+...      ....+..+++|+. |
T Consensus       230 ~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~-L  301 (477)
T 2id5_A          230 SITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV------EPYAFRGLNYLRV-L  301 (477)
T ss_dssp             EEESSC-CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEE------CTTTBTTCTTCCE-E
T ss_pred             ECcCCc-ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceE------CHHHhcCcccCCE-E
Confidence            999986 44444    3578999999998865     1244567788887732211100      0123456677777 5


Q ss_pred             EEeeeeeeecchhhhhccCCCCCCCceEEEEEccc
Q 036679          223 NLECYAAAIIPRELREILSSPLTYENHVCFIINSE  257 (294)
Q Consensus       223 ~~~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~~~  257 (294)
                      +++.+....+|+..    ...+++|++|.+..|..
T Consensus       302 ~L~~N~l~~~~~~~----~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          302 NVSGNQLTTLEESV----FHSVGNLETLILDSNPL  332 (477)
T ss_dssp             ECCSSCCSCCCGGG----BSCGGGCCEEECCSSCE
T ss_pred             ECCCCcCceeCHhH----cCCCcccCEEEccCCCc
Confidence            88877777777652    34578999999987633

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.53  E-value=1e-13  Score=121.89  Aligned_cols=242  Identities=14%  Similarity=0.180  Sum_probs=163.8

Q ss_pred             CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccC--Ccccc-cc
Q 036679            2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNED--RLARV-SI   75 (294)
Q Consensus         2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~--~l~~~-~~   75 (294)
                      +|..+  .++|++|++++|.+++- ....+..+++|++|+++++. +..+.   +.++++|++|+++++.  .+..- ..
T Consensus        46 iP~~~--~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  121 (353)
T 2z80_A           46 IPSGL--TEAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK  121 (353)
T ss_dssp             CCTTC--CTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHT
T ss_pred             ccccc--cccCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhC
Confidence            45433  35899999999988641 12246789999999999884 54442   5677899999999885  22221 12


Q ss_pred             cCCcccEEEeeCCCCCc-c--cccccccccceEEecccc-cChHHHHHHhcCCCCCcEEeecccccceeecc---c-ccc
Q 036679           76 CGPNVRLVDISSLHAPC-G--INVALCKNLKELKLFKLS-ITNEWLCNQFSELPFLEYLEIFRCMKIRSIKI---S-SPY  147 (294)
Q Consensus        76 ~~~~L~~L~l~~c~~~~-~--~~~~~~~~L~~L~L~~~~-i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i---~-~~~  147 (294)
                      ..++|++|+++++.... +  ..+..+++|++|+++++. +++. ....+.++++|+.|+++++. ++.+..   . .++
T Consensus       122 ~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~  199 (353)
T 2z80_A          122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI-QRKDFAGLTFLEELEIDASD-LQSYEPKSLKSIQN  199 (353)
T ss_dssp             TCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE-CTTTTTTCCEEEEEEEEETT-CCEECTTTTTTCSE
T ss_pred             CCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccccc-CHHHccCCCCCCEEECCCCC-cCccCHHHHhcccc
Confidence            46899999999987432 2  246788999999999984 4432 23446788999999999865 444321   1 268


Q ss_pred             cceEEeecccCceeee----ccCCCccEEEEcCceeee--------ecCccccceEEEEEEEeccChhHHHHHHHHHhcC
Q 036679          148 LKKLLVRFCNKLYEFK----LDTPNLSVFDYEGDMVSF--------SSNALALSETSLCLDSINVDNQWLVKFIELLAKL  215 (294)
Q Consensus       148 L~~L~l~~c~~l~~~~----~~~p~L~~l~~~g~~~~~--------~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l  215 (294)
                      |++|+++++.. +.++    -..++|+.++++++....        ......++.+.+  ............+.+.+..+
T Consensus       200 L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L--~~~~l~~~~l~~l~~~l~~l  276 (353)
T 2z80_A          200 VSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF--RNVKITDESLFQVMKLLNQI  276 (353)
T ss_dssp             EEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEE--ESCBCCHHHHHHHHHHHHTC
T ss_pred             CCeecCCCCcc-ccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccc--ccccccCcchhhhHHHHhcc
Confidence            99999998873 3332    247899999999876511        112334555555  33333443334556667788


Q ss_pred             cccceeEEEeeeeeeecchhhhhccCCCCCCCceEEEEEccc
Q 036679          216 NHCSNVLNLECYAAAIIPRELREILSSPLTYENHVCFIINSE  257 (294)
Q Consensus       216 ~~l~~LL~~~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~~~  257 (294)
                      ++|+. |+++.+....+|.+.    ...+++|++|.+..|..
T Consensus       277 ~~L~~-L~Ls~N~l~~i~~~~----~~~l~~L~~L~L~~N~~  313 (353)
T 2z80_A          277 SGLLE-LEFSRNQLKSVPDGI----FDRLTSLQKIWLHTNPW  313 (353)
T ss_dssp             TTCCE-EECCSSCCCCCCTTT----TTTCTTCCEEECCSSCB
T ss_pred             cCCCE-EECCCCCCCccCHHH----HhcCCCCCEEEeeCCCc
Confidence            88888 588877777888763    24678999999998644

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.53  E-value=8.1e-15  Score=133.16  Aligned_cols=126  Identities=11%  Similarity=-0.009  Sum_probs=75.2

Q ss_pred             CCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCC--ccc-ccccCCcccEE
Q 036679           10 SSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDR--LAR-VSICGPNVRLV   83 (294)
Q Consensus        10 ~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~--l~~-~~~~~~~L~~L   83 (294)
                      ++|++|+|++|.+++. .+..++++++|++|+++++.-...+   .+.++++|++|+++++.-  +.. .....++|++|
T Consensus        30 ~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  108 (455)
T 3v47_A           30 AHVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL  108 (455)
T ss_dssp             TTCCEEECCSSCCCEE-CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred             CccCEEEecCCccCcC-ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence            6778888888776532 1233567778888888777533232   245567777777777651  111 11235677777


Q ss_pred             EeeCCCCCc--c--cccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccc
Q 036679           84 DISSLHAPC--G--INVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCM  136 (294)
Q Consensus        84 ~l~~c~~~~--~--~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~  136 (294)
                      ++++|....  +  ..+..+++|++|+++++.+++......+.++++|+.|+++++.
T Consensus       109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  165 (455)
T 3v47_A          109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK  165 (455)
T ss_dssp             ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred             eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence            777776432  1  1255667777777777766543212235567777777777653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.52  E-value=8.2e-15  Score=137.92  Aligned_cols=234  Identities=14%  Similarity=0.084  Sum_probs=118.6

Q ss_pred             CCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccC--Cc---ccccccCCcc
Q 036679            6 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNED--RL---ARVSICGPNV   80 (294)
Q Consensus         6 ~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~--~l---~~~~~~~~~L   80 (294)
                      +..+++|++|++++|.+.  .++.+  .+++|++|++++|.......+..+++|++|+++++.  ..   ......+++|
T Consensus       303 l~~~~~L~~L~l~~n~l~--~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L  378 (606)
T 3vq2_A          303 VPKHFKWQSLSIIRCQLK--QFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL  378 (606)
T ss_dssp             CCTTCCCSEEEEESCCCS--SCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCC
T ss_pred             ccccccCCEEEcccccCc--ccccC--CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcc
Confidence            344455555555555542  12222  555666666666544444444555666666666654  11   1111235666


Q ss_pred             cEEEeeCCCCC-cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec--cc-ccccceEEeecc
Q 036679           81 RLVDISSLHAP-CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK--IS-SPYLKKLLVRFC  156 (294)
Q Consensus        81 ~~L~l~~c~~~-~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~--i~-~~~L~~L~l~~c  156 (294)
                      +.|++++|... .+..+..+++|++|+++++.+++......+.++++|+.|++++|......+  +. .++|++|++++|
T Consensus       379 ~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  458 (606)
T 3vq2_A          379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN  458 (606)
T ss_dssp             CEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred             cEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC
Confidence            77776666521 123455666777777777665543111345566777777777655322221  11 156777777776


Q ss_pred             cCcee-ee---ccCCCccEEEEcCceee-----eecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEEeee
Q 036679          157 NKLYE-FK---LDTPNLSVFDYEGDMVS-----FSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECY  227 (294)
Q Consensus       157 ~~l~~-~~---~~~p~L~~l~~~g~~~~-----~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~  227 (294)
                      ..... ++   ...++|++++++++...     .+...++|+.+.+....+...      .+..++.+++|+. |+++.+
T Consensus       459 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~-L~l~~N  531 (606)
T 3vq2_A          459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL------DSSHYNQLYSLST-LDCSFN  531 (606)
T ss_dssp             EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCE------EGGGTTTCTTCCE-EECTTS
T ss_pred             cCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCc------CHHHccCCCcCCE-EECCCC
Confidence            53321 22   24567777777766441     123445566665522111100      0122344555555 466655


Q ss_pred             eeeecchhhhhccCCCCC-CCceEEEEEc
Q 036679          228 AAAIIPRELREILSSPLT-YENHVCFIIN  255 (294)
Q Consensus       228 ~~~~~p~~~~~~~~~~f~-~Lk~L~L~~~  255 (294)
                      ....+|.+     ...++ +|++|.+..|
T Consensus       532 ~l~~~p~~-----~~~l~~~L~~l~l~~N  555 (606)
T 3vq2_A          532 RIETSKGI-----LQHFPKSLAFFNLTNN  555 (606)
T ss_dssp             CCCCEESC-----GGGSCTTCCEEECCSC
T ss_pred             cCcccCHh-----HhhhcccCcEEEccCC
Confidence            55566654     22333 4777777664

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.52  E-value=2.2e-14  Score=134.95  Aligned_cols=126  Identities=11%  Similarity=0.093  Sum_probs=74.5

Q ss_pred             CCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccC--Ccccc-cccCCcc
Q 036679            7 VTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNED--RLARV-SICGPNV   80 (294)
Q Consensus         7 ~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~--~l~~~-~~~~~~L   80 (294)
                      ..+++++.|++.++.++. ....++..+++|+.|+++++. +..+   .+.++++|++|++++|.  .+..- ...+++|
T Consensus        48 l~l~~l~~l~l~~~~l~~-lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  125 (597)
T 3oja_B           48 ITLNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  125 (597)
T ss_dssp             GGGCCCSEEEESSCEESE-ECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             ccCCCceEEEeeCCCCCC-cCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence            346777888887776642 223446677888888887764 3333   24556777777777664  11111 1245677


Q ss_pred             cEEEeeCCCCCc-c-cccccccccceEEecccccChHHHHHHhcCCCCCcEEeeccc
Q 036679           81 RLVDISSLHAPC-G-INVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRC  135 (294)
Q Consensus        81 ~~L~l~~c~~~~-~-~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c  135 (294)
                      +.|++++|.+.. + ..+..+++|++|+++++.+++. .+..+.++++|+.|+++++
T Consensus       126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N  181 (597)
T 3oja_B          126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSSN  181 (597)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEEECTTS
T ss_pred             CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC-ChhhhhcCCcCcEEECcCC
Confidence            777777776321 1 2245667777777777765542 2233556677777777664

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.52  E-value=2.2e-14  Score=139.60  Aligned_cols=172  Identities=10%  Similarity=0.085  Sum_probs=113.6

Q ss_pred             CCCCCCCCCCccEEEeeecccChH----------------HHHHHHh--cCCCCCEEEEEcCCCCCee--ccCCCCCccE
Q 036679            2 SPTRNVTLSSLRELGLFKCAANDE----------------AIRDIVA--GCPLIERLKIIDCRGLKSL--EFLNLGKLSK   61 (294)
Q Consensus         2 ~p~~~~~l~~Lk~L~L~~~~~~~~----------------~l~~~~~--~~~~Le~L~L~~c~~l~~l--~~~~l~~L~~   61 (294)
                      +|..+.++++|++|+|++|.++++                .++..++  ++++|++|++++|.-...+  .+.++++|+.
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            687888999999999999988752                2444445  8999999999998644333  2566788999


Q ss_pred             EEccccCCccc--c----------cccCCcccEEEeeCCCCC-ccc--ccccccccceEEecccccChHHHHHHhcCCCC
Q 036679           62 FMVRNEDRLAR--V----------SICGPNVRLVDISSLHAP-CGI--NVALCKNLKELKLFKLSITNEWLCNQFSELPF  126 (294)
Q Consensus        62 L~l~~c~~l~~--~----------~~~~~~L~~L~l~~c~~~-~~~--~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~  126 (294)
                      |+++++..+..  +          ....++|+.|++++|.+. .+.  .+..+++|+.|+++++.++.  ++ .++++++
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~--lp-~~~~L~~  596 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH--LE-AFGTNVK  596 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCB--CC-CCCTTSE
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCccc--ch-hhcCCCc
Confidence            99988852321  1          113458888888888743 223  46677888888888887762  44 5667788


Q ss_pred             CcEEeecccccceeecccc---cc-cceEEeecccCceeeec-----cCCCccEEEEcCce
Q 036679          127 LEYLEIFRCMKIRSIKISS---PY-LKKLLVRFCNKLYEFKL-----DTPNLSVFDYEGDM  178 (294)
Q Consensus       127 L~~L~l~~c~~l~~l~i~~---~~-L~~L~l~~c~~l~~~~~-----~~p~L~~l~~~g~~  178 (294)
                      |+.|+++++. ++.++...   ++ |+.|++++|.. +.++-     ..++|+.|+++++.
T Consensus       597 L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~L-~~lp~~~~~~~~~~L~~L~Ls~N~  655 (876)
T 4ecn_A          597 LTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNK  655 (876)
T ss_dssp             ESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSCC-CSCCSCCCTTCSSCEEEEECCSSC
T ss_pred             ceEEECcCCc-cccchHHHhhccccCCEEECcCCCC-CcCchhhhccccCCCCEEECcCCc
Confidence            8888887754 33333111   45 77777777652 23331     11236666665554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.51  E-value=4.9e-15  Score=140.42  Aligned_cols=173  Identities=13%  Similarity=0.128  Sum_probs=110.1

Q ss_pred             CCCCCCCCCCccEEEeeecccChH----------------HHHHHHh--cCCCCCEEEEEcCCCCCee--ccCCCCCccE
Q 036679            2 SPTRNVTLSSLRELGLFKCAANDE----------------AIRDIVA--GCPLIERLKIIDCRGLKSL--EFLNLGKLSK   61 (294)
Q Consensus         2 ~p~~~~~l~~Lk~L~L~~~~~~~~----------------~l~~~~~--~~~~Le~L~L~~c~~l~~l--~~~~l~~L~~   61 (294)
                      +|..+.++++|++|+|++|.+++.                .++..++  ++++|++|++++|.-...+  .+.++++|++
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  277 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL  277 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence            577788899999999999988652                1455566  8999999999998643333  3566788999


Q ss_pred             EEccccCCccc--cc--c-------cCCcccEEEeeCCCCC-ccc--ccccccccceEEecccccChHHHHHHhcCCCCC
Q 036679           62 FMVRNEDRLAR--VS--I-------CGPNVRLVDISSLHAP-CGI--NVALCKNLKELKLFKLSITNEWLCNQFSELPFL  127 (294)
Q Consensus        62 L~l~~c~~l~~--~~--~-------~~~~L~~L~l~~c~~~-~~~--~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L  127 (294)
                      |++++|..+..  +.  +       .+++|+.|++++|.+. .+.  .++.+++|++|+++++.+++. ++ .+..+++|
T Consensus       278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~-ip-~~~~l~~L  355 (636)
T 4eco_A          278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK-LP-AFGSEIKL  355 (636)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEE-CC-CCEEEEEE
T ss_pred             EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccc-hh-hhCCCCCC
Confidence            99988863332  21  1       1378888888888743 223  466777888888888776632 33 45566777


Q ss_pred             cEEeecccccceeecccc---cc-cceEEeecccCceeeec-----cCCCccEEEEcCce
Q 036679          128 EYLEIFRCMKIRSIKISS---PY-LKKLLVRFCNKLYEFKL-----DTPNLSVFDYEGDM  178 (294)
Q Consensus       128 ~~L~l~~c~~l~~l~i~~---~~-L~~L~l~~c~~l~~~~~-----~~p~L~~l~~~g~~  178 (294)
                      +.|+++++. ++.++...   ++ |++|+++++... .++-     ..++|+.++++++.
T Consensus       356 ~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~  413 (636)
T 4eco_A          356 ASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNE  413 (636)
T ss_dssp             SEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSC
T ss_pred             CEEECCCCc-cccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCc
Confidence            777777653 33332211   34 677777666522 3321     12245555555543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.51  E-value=8.3e-14  Score=126.62  Aligned_cols=147  Identities=12%  Similarity=0.056  Sum_probs=70.8

Q ss_pred             CCcccEEEeeCCCCCcc--cc-----cccccccceEEecccccChHH---HHHHhcCCCCCcEEeecccccceeecc---
Q 036679           77 GPNVRLVDISSLHAPCG--IN-----VALCKNLKELKLFKLSITNEW---LCNQFSELPFLEYLEIFRCMKIRSIKI---  143 (294)
Q Consensus        77 ~~~L~~L~l~~c~~~~~--~~-----~~~~~~L~~L~L~~~~i~~~~---l~~l~~~~~~L~~L~l~~c~~l~~l~i---  143 (294)
                      +++|++|++++|.....  ..     ....++|++|+++++.+++..   +...+..+++|+.|+++++. +.....   
T Consensus       112 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l  190 (461)
T 1z7x_W          112 LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVL  190 (461)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHH
T ss_pred             CCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHH
Confidence            45666666666553210  00     111335666666666655432   33445556677777776654 222111   


Q ss_pred             ------cccccceEEeecccCcee----ee---ccCCCccEEEEcCceeee----------ecCccccceEEEEEEEecc
Q 036679          144 ------SSPYLKKLLVRFCNKLYE----FK---LDTPNLSVFDYEGDMVSF----------SSNALALSETSLCLDSINV  200 (294)
Q Consensus       144 ------~~~~L~~L~l~~c~~l~~----~~---~~~p~L~~l~~~g~~~~~----------~~~~~~L~~~~i~~~~~~~  200 (294)
                            ..++|++|++++|..-..    +.   ...++|++++++++.+..          ....++|+.+.+....  .
T Consensus       191 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~--l  268 (461)
T 1z7x_W          191 CQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG--I  268 (461)
T ss_dssp             HHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC--C
T ss_pred             HHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC--C
Confidence                  013677777777642210    11   135677777777765410          0124556666552111  1


Q ss_pred             ChhHHHHHHHHHhcCcccceeEEEeee
Q 036679          201 DNQWLVKFIELLAKLNHCSNVLNLECY  227 (294)
Q Consensus       201 ~~~~~~~~~~~l~~l~~l~~LL~~~~~  227 (294)
                      .......+.+.+..+++|+.| +++.+
T Consensus       269 ~~~~~~~l~~~l~~~~~L~~L-~Ls~n  294 (461)
T 1z7x_W          269 TAKGCGDLCRVLRAKESLKEL-SLAGN  294 (461)
T ss_dssp             CHHHHHHHHHHHHHCTTCCEE-ECTTC
T ss_pred             CHHHHHHHHHHHhhCCCcceE-ECCCC
Confidence            111122244455566777774 55443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.50  E-value=1.1e-13  Score=135.30  Aligned_cols=127  Identities=15%  Similarity=-0.004  Sum_probs=67.6

Q ss_pred             CCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccC--Cc-ccccccCCccc
Q 036679            8 TLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNED--RL-ARVSICGPNVR   81 (294)
Q Consensus         8 ~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~--~l-~~~~~~~~~L~   81 (294)
                      -.++|++|+|++|.++.. .+..+.++++|++|++++|.....+   .+.++++|++|+++++.  .+ .......++|+
T Consensus        22 lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  100 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF  100 (844)
T ss_dssp             SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred             CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccC
Confidence            356777777777766431 1223566777777777777544333   24455666666666654  11 01112345666


Q ss_pred             EEEeeCCCCCc--c--cccccccccceEEecccccChHHHHHHhcCCCCCcEEeeccc
Q 036679           82 LVDISSLHAPC--G--INVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRC  135 (294)
Q Consensus        82 ~L~l~~c~~~~--~--~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c  135 (294)
                      +|++++|....  +  ..+..+++|++|+++++.+++......++++++|+.|+++++
T Consensus       101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A          101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred             EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence            66666665321  1  124555666666666665543222233455666666666553

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.49  E-value=4.9e-15  Score=140.43  Aligned_cols=44  Identities=11%  Similarity=0.298  Sum_probs=22.7

Q ss_pred             CCCCCC--CCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCC
Q 036679            2 SPTRNV--TLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCR   46 (294)
Q Consensus         2 ~p~~~~--~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~   46 (294)
                      +|..+.  ++++|++|+|++|.+.. .++..+.++++|++|++++|.
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~  284 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLT-KLPTFLKALPEMQLINVACNR  284 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCS-SCCTTTTTCSSCCEEECTTCT
T ss_pred             CchhhhhcccCCCCEEEecCCcCCc-cChHHHhcCCCCCEEECcCCC
Confidence            455555  56666666666655432 122334455555555555554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.49  E-value=3.9e-14  Score=133.30  Aligned_cols=127  Identities=17%  Similarity=0.175  Sum_probs=62.4

Q ss_pred             CCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCC--eeccCCCCCccEEEccccCCcccc----cccCCc
Q 036679            6 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLK--SLEFLNLGKLSKFMVRNEDRLARV----SICGPN   79 (294)
Q Consensus         6 ~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~--~l~~~~l~~L~~L~l~~c~~l~~~----~~~~~~   79 (294)
                      +..+++|++|++++|.++  .++..+..+++|++|++++|.--.  ...+.++++|++|+++++.....+    ...+++
T Consensus       274 ~~~l~~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~  351 (606)
T 3t6q_A          274 FHCFSGLQELDLTATHLS--ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN  351 (606)
T ss_dssp             TTTCTTCSEEECTTSCCS--CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred             hccccCCCEEeccCCccC--CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence            455666666666666553  222234556666666666653111  112344556666666655421111    113455


Q ss_pred             ccEEEeeCCCCCc----ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeeccc
Q 036679           80 VRLVDISSLHAPC----GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRC  135 (294)
Q Consensus        80 L~~L~l~~c~~~~----~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c  135 (294)
                      |+.|++++|....    +..+..+++|++|+++++.+++. .+..+..+++|+.|+++++
T Consensus       352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n  410 (606)
T 3t6q_A          352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL-KTEAFKECPQLELLDLAFT  410 (606)
T ss_dssp             CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE-CTTTTTTCTTCSEEECTTC
T ss_pred             CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC-CHHHhcCCccCCeEECCCC
Confidence            6666665554221    12344555566666655554332 1223444555555555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.49  E-value=1.3e-13  Score=129.69  Aligned_cols=253  Identities=14%  Similarity=0.097  Sum_probs=176.8

Q ss_pred             CCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccC--Ccccc-cccCCcc
Q 036679            7 VTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNED--RLARV-SICGPNV   80 (294)
Q Consensus         7 ~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~--~l~~~-~~~~~~L   80 (294)
                      ..+++|++|+|++|.+++. .+..++.+++|++|++++|. +..+.   +.++++|++|++++|.  .+..- ....++|
T Consensus        72 ~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L  149 (597)
T 3oja_B           72 DSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL  149 (597)
T ss_dssp             HHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             ccCCCCcEEECCCCCCCCC-ChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCC
Confidence            5689999999999988642 22246889999999999985 43332   4678999999999985  22211 1356899


Q ss_pred             cEEEeeCCCCC--cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccccccceEEeecccC
Q 036679           81 RLVDISSLHAP--CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISSPYLKKLLVRFCNK  158 (294)
Q Consensus        81 ~~L~l~~c~~~--~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~~~L~~L~l~~c~~  158 (294)
                      +.|++++|.+.  .+..+..+++|++|+++++.+++..    ++.+++|+.|+++++ .++.+... ++|+.|+++++..
T Consensus       150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L~~L~l~~n-~l~~l~~~-~~L~~L~ls~n~l  223 (597)
T 3oja_B          150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYN-LLSTLAIP-IAVEELDASHNSI  223 (597)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----GGGCTTCSEEECCSS-CCSEEECC-TTCSEEECCSSCC
T ss_pred             CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----hhhhhhhhhhhcccC-ccccccCC-chhheeeccCCcc
Confidence            99999999743  2235778899999999999887642    456899999999985 35544322 5799999999874


Q ss_pred             ceeee-ccCCCccEEEEcCcee---eeecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEEeeeeeeecch
Q 036679          159 LYEFK-LDTPNLSVFDYEGDMV---SFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAIIPR  234 (294)
Q Consensus       159 l~~~~-~~~p~L~~l~~~g~~~---~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~~~p~  234 (294)
                       +.++ ...++|+.|++.++..   ..+...++|+.+.+....+...      .+..+..+++|+. |.++.+....+|.
T Consensus       224 -~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~-L~Ls~N~l~~l~~  295 (597)
T 3oja_B          224 -NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI------MYHPFVKMQRLER-LYISNNRLVALNL  295 (597)
T ss_dssp             -CEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE------ESGGGTTCSSCCE-EECTTSCCCEEEC
T ss_pred             -cccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCC------CHHHhcCccCCCE-EECCCCCCCCCCc
Confidence             3333 3346899999998866   2344567788887732221110      1223556777777 5777776666765


Q ss_pred             hhhhccCCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEeeCCC
Q 036679          235 ELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCNDC  287 (294)
Q Consensus       235 ~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~~~~~  287 (294)
                      .     ...+++|++|.|..|...   ..+.    -+..+|+|++|.+.....
T Consensus       296 ~-----~~~l~~L~~L~Ls~N~l~---~i~~----~~~~l~~L~~L~L~~N~l  336 (597)
T 3oja_B          296 Y-----GQPIPTLKVLDLSHNHLL---HVER----NQPQFDRLENLYLDHNSI  336 (597)
T ss_dssp             S-----SSCCTTCCEEECCSSCCC---CCGG----GHHHHTTCSEEECCSSCC
T ss_pred             c-----cccCCCCcEEECCCCCCC---ccCc----ccccCCCCCEEECCCCCC
Confidence            5     456789999999975442   2111    135568999999987644

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.48  E-value=3.4e-13  Score=131.79  Aligned_cols=111  Identities=14%  Similarity=-0.004  Sum_probs=80.1

Q ss_pred             CCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCCcc----c-cc
Q 036679            3 PTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDRLA----R-VS   74 (294)
Q Consensus         3 p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~l~----~-~~   74 (294)
                      |..+.++++|++|+|++|.......+..+.++++|++|++++|. +..+   .+.++++|++|++++|.-..    . ..
T Consensus        41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  119 (844)
T 3j0a_A           41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF  119 (844)
T ss_dssp             SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred             hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHccCCcccCEeeCcCCCCCcccccCccc
Confidence            56788899999999999854322223447889999999999885 3333   35678899999999885211    1 02


Q ss_pred             ccCCcccEEEeeCCCCC---cccccccccccceEEecccccCh
Q 036679           75 ICGPNVRLVDISSLHAP---CGINVALCKNLKELKLFKLSITN  114 (294)
Q Consensus        75 ~~~~~L~~L~l~~c~~~---~~~~~~~~~~L~~L~L~~~~i~~  114 (294)
                      ...++|+.|++++|...   .+..++.+++|++|+++++.+++
T Consensus       120 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A          120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence            24688999999998742   22356788999999999887654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.48  E-value=2.1e-12  Score=119.24  Aligned_cols=126  Identities=14%  Similarity=0.059  Sum_probs=94.4

Q ss_pred             CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCCccccc-ccC
Q 036679            2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDRLARVS-ICG   77 (294)
Q Consensus         2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~l~~~~-~~~   77 (294)
                      +|..+.  ++|++|+|++|.+++. .+..+.++++|++|+++++. +..+   .+.++++|++|+++++. +..+. ...
T Consensus        15 ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~l   89 (520)
T 2z7x_B           15 VPKDLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNK-LVKISCHPT   89 (520)
T ss_dssp             CCCSCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSSC-CCEEECCCC
T ss_pred             cccccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCCc-eeecCcccc
Confidence            565544  8999999999988642 23457889999999999985 4443   35678999999999885 22221 167


Q ss_pred             CcccEEEeeCCCCC---cccccccccccceEEecccccChHHHHHHhcCCCCC--cEEeecccc
Q 036679           78 PNVRLVDISSLHAP---CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFL--EYLEIFRCM  136 (294)
Q Consensus        78 ~~L~~L~l~~c~~~---~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L--~~L~l~~c~  136 (294)
                      ++|++|++++|...   .+..++.+++|++|+++++.+++..    +..+++|  +.|+++++.
T Consensus        90 ~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L~L~~L~l~~n~  149 (520)
T 2z7x_B           90 VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS----VLPIAHLNISKVLLVLGE  149 (520)
T ss_dssp             CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGG----GGGGTTSCEEEEEEEECT
T ss_pred             CCccEEeccCCccccccchhhhccCCcceEEEecCcccchhh----ccccccceeeEEEeeccc
Confidence            89999999999743   3356788999999999999887633    4556777  888888764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.48  E-value=5.4e-15  Score=139.16  Aligned_cols=133  Identities=18%  Similarity=0.138  Sum_probs=55.5

Q ss_pred             CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCC--cc--c-c
Q 036679            2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDR--LA--R-V   73 (294)
Q Consensus         2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~--l~--~-~   73 (294)
                      +|..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.....+   .+.++++|++|+++++.-  ..  . .
T Consensus       293 lp~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  371 (606)
T 3t6q_A          293 LPSGLVGLSTLKKLVLSANKFENL-CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ  371 (606)
T ss_dssp             CCSSCCSCTTCCEEECTTCCCSBG-GGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT
T ss_pred             CChhhcccccCCEEECccCCcCcC-chhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh
Confidence            344444555555555555544321 1122344555555555554321111   123345555555554431  10  0 0


Q ss_pred             cccCCcccEEEeeCCCCC--cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeeccc
Q 036679           74 SICGPNVRLVDISSLHAP--CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRC  135 (294)
Q Consensus        74 ~~~~~~L~~L~l~~c~~~--~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c  135 (294)
                      ...+++|+.|++++|...  .+..+..+++|++|+++++.+++......+.++++|+.|++++|
T Consensus       372 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  435 (606)
T 3t6q_A          372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS  435 (606)
T ss_dssp             TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred             cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence            112345555555555421  11223444555555555554433211222344555555555544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.47  E-value=4.3e-14  Score=123.18  Aligned_cols=258  Identities=13%  Similarity=0.059  Sum_probs=147.6

Q ss_pred             CCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCCccccc-ccCCcccEEEe
Q 036679           10 SSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDRLARVS-ICGPNVRLVDI   85 (294)
Q Consensus        10 ~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~l~~~~-~~~~~L~~L~l   85 (294)
                      ++|++|+|++|.+++. ....+..+++|++|+++++. +..+   .+.++++|++|+++++. +..+. ...++|++|++
T Consensus        52 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~~L~~L~l  128 (330)
T 1xku_A           52 PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMPKTLQELRV  128 (330)
T ss_dssp             TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCCTTCCEEEC
T ss_pred             CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEECCCCc-CCccChhhcccccEEEC
Confidence            6788888888876531 11235677888888888774 3222   24567788888888764 22221 12367888888


Q ss_pred             eCCCCCc--ccccccccccceEEecccccChHH-HHHHhcCCCCCcEEeecccccceeecccc-cccceEEeecccCcee
Q 036679           86 SSLHAPC--GINVALCKNLKELKLFKLSITNEW-LCNQFSELPFLEYLEIFRCMKIRSIKISS-PYLKKLLVRFCNKLYE  161 (294)
Q Consensus        86 ~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~-l~~l~~~~~~L~~L~l~~c~~l~~l~i~~-~~L~~L~l~~c~~l~~  161 (294)
                      +++....  +..+..+++|++|+++++.++..+ ....+.++++|+.|+++++. ++.++... ++|++|+++++. ++.
T Consensus       129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~-l~~  206 (330)
T 1xku_A          129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLDGNK-ITK  206 (330)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECTTSC-CCE
T ss_pred             CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEEECCCCc-CCc
Confidence            8776432  123567788888888887765321 23345677888888888754 44433222 678888888776 333


Q ss_pred             ee----ccCCCccEEEEcCceee-----eecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEEeeeeeeec
Q 036679          162 FK----LDTPNLSVFDYEGDMVS-----FSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAII  232 (294)
Q Consensus       162 ~~----~~~p~L~~l~~~g~~~~-----~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~~~  232 (294)
                      +.    ...++|++++++++.+.     .+...++|+.+.+....+.       .++..+..+++++. |.++.+....+
T Consensus       207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~lp~~l~~l~~L~~-L~l~~N~i~~~  278 (330)
T 1xku_A          207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-------KVPGGLADHKYIQV-VYLHNNNISAI  278 (330)
T ss_dssp             ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-------SCCTTTTTCSSCCE-EECCSSCCCCC
T ss_pred             cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-------cCChhhccCCCcCE-EECCCCcCCcc
Confidence            32    24578888888877551     2334456776666322111       11122344556666 46666656566


Q ss_pred             chhhhhcc--CCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEee
Q 036679          233 PRELREIL--SSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKC  284 (294)
Q Consensus       233 p~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~~  284 (294)
                      +...+...  ...+..++.|.+..|..    ..+.+...-..+++.++.+.+..
T Consensus       279 ~~~~f~~~~~~~~~~~l~~l~l~~N~~----~~~~i~~~~f~~~~~l~~l~L~~  328 (330)
T 1xku_A          279 GSNDFCPPGYNTKKASYSGVSLFSNPV----QYWEIQPSTFRCVYVRAAVQLGN  328 (330)
T ss_dssp             CTTSSSCSSCCTTSCCCSEEECCSSSS----CGGGSCGGGGTTCCCGGGEEC--
T ss_pred             ChhhcCCcccccccccccceEeecCcc----cccccCccccccccceeEEEecc
Confidence            55432211  11245677777765322    11122233466677777776654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.47  E-value=1.4e-14  Score=140.95  Aligned_cols=131  Identities=18%  Similarity=0.176  Sum_probs=72.4

Q ss_pred             CCCCCC--CCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCe--e---------ccCCCCCccEEEccccC
Q 036679            2 SPTRNV--TLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKS--L---------EFLNLGKLSKFMVRNED   68 (294)
Q Consensus         2 ~p~~~~--~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~--l---------~~~~l~~L~~L~l~~c~   68 (294)
                      +|..+.  ++++|++|+|++|.+... ++..+.++++|+.|+++++..+..  +         .+..+++|++|+++++.
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~-iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~  559 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN  559 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCS-CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCcc-ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence            677766  788888888877765432 234466777777777777653321  1         11233466666666654


Q ss_pred             --Cccc--ccccCCcccEEEeeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCC-CcEEeeccc
Q 036679           69 --RLAR--VSICGPNVRLVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPF-LEYLEIFRC  135 (294)
Q Consensus        69 --~l~~--~~~~~~~L~~L~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~-L~~L~l~~c  135 (294)
                        .+..  .....++|+.|++++|.+..-..+..+++|+.|+++++.++  .++..+.++++ |+.|+++++
T Consensus       560 L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N  629 (876)
T 4ecn_A          560 LEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHN  629 (876)
T ss_dssp             CCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSS
T ss_pred             CCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCC
Confidence              1111  11134566666666665321114455566666666666554  13333445555 666666654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.46  E-value=2.3e-13  Score=123.94  Aligned_cols=177  Identities=13%  Similarity=0.139  Sum_probs=122.2

Q ss_pred             CCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCCcccccc-cCCcccEEE
Q 036679            6 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVSI-CGPNVRLVD   84 (294)
Q Consensus         6 ~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~l~~~~~-~~~~L~~L~   84 (294)
                      +.++++|++|+++++.+++-  + -+..+++|++|++++|. +..+.+..+++|++|+++++. +..+.+ ..++|+.|+
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~--~-~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~L~~L~  112 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDM--T-GIEKLTGLTKLICTSNN-ITTLDLSQNTNLTYLACDSNK-LTNLDVTPLTKLTYLN  112 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCC--T-TGGGCTTCSEEECCSSC-CSCCCCTTCTTCSEEECCSSC-CSCCCCTTCTTCCEEE
T ss_pred             hhHcCCCCEEEccCCCcccC--h-hhcccCCCCEEEccCCc-CCeEccccCCCCCEEECcCCC-CceeecCCCCcCCEEE
Confidence            34578999999999988642  2 36788999999999884 555567788899999998875 222222 467899999


Q ss_pred             eeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccc-cccceEEeecccCceeee
Q 036679           85 ISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISS-PYLKKLLVRFCNKLYEFK  163 (294)
Q Consensus        85 l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~-~~L~~L~l~~c~~l~~~~  163 (294)
                      +++|.... ..++.+++|++|+++++.+++-  .  ++.+++|+.|+++++..+..+.+.. ++|++|+++++. ++.++
T Consensus       113 L~~N~l~~-l~~~~l~~L~~L~l~~N~l~~l--~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~-l~~l~  186 (457)
T 3bz5_A          113 CDTNKLTK-LDVSQNPLLTYLNCARNTLTEI--D--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNK-ITELD  186 (457)
T ss_dssp             CCSSCCSC-CCCTTCTTCCEEECTTSCCSCC--C--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSC-CCCCC
T ss_pred             CCCCcCCe-ecCCCCCcCCEEECCCCcccee--c--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCc-cceec
Confidence            98887432 2367788899999988887763  1  5678888888888876666554443 678888887764 33343


Q ss_pred             c-cCCCccEEEEcCcee--eeecCccccceEEE
Q 036679          164 L-DTPNLSVFDYEGDMV--SFSSNALALSETSL  193 (294)
Q Consensus       164 ~-~~p~L~~l~~~g~~~--~~~~~~~~L~~~~i  193 (294)
                      + ..++|+.+++.++..  ..+...++|+.+++
T Consensus       187 l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~L  219 (457)
T 3bz5_A          187 VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDC  219 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEEC
T ss_pred             cccCCCCCEEECcCCcCCeeccccCCCCCEEEC
Confidence            2 356677777766654  22334455666555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.46  E-value=9.6e-14  Score=130.60  Aligned_cols=255  Identities=16%  Similarity=0.128  Sum_probs=167.3

Q ss_pred             CCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec-cCCCCCccEEEccccCCcccccc-cCCcccEE
Q 036679            6 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE-FLNLGKLSKFMVRNEDRLARVSI-CGPNVRLV   83 (294)
Q Consensus         6 ~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~-~~~l~~L~~L~l~~c~~l~~~~~-~~~~L~~L   83 (294)
                      ...+++|+.|+++++.+..  ++ .+..+++|++|++++|.- ..+. + .+++|++|+++++.....+.. ..++|+.|
T Consensus       281 ~~~l~~L~~L~l~~~~~~~--l~-~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L  355 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSIKY--LE-DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYL  355 (606)
T ss_dssp             CGGGTTCSEEEEESCCCCC--CC-CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEE
T ss_pred             cccCCCCCEEEecCccchh--hh-hccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchhhccCCCCCEE
Confidence            4567888888888887743  22 466778899999988864 3332 3 678899999988864444322 56889999


Q ss_pred             EeeCCCCCc----ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec---c-cccccceEEeec
Q 036679           84 DISSLHAPC----GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK---I-SSPYLKKLLVRF  155 (294)
Q Consensus        84 ~l~~c~~~~----~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~---i-~~~~L~~L~l~~  155 (294)
                      ++++|....    +..+..+++|++|+++++.+++  ++..+..+++|+.|+++++.-.....   + ..++|++|++++
T Consensus       356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  433 (606)
T 3vq2_A          356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII--MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY  433 (606)
T ss_dssp             ECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE--ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTT
T ss_pred             ECcCCccCCCcchhhhhccCCcccEeECCCCcccc--chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcC
Confidence            998887321    3345678889999999887665  22456678999999999865322222   1 126899999999


Q ss_pred             ccCceeee---ccCCCccEEEEcCceee------eecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEEee
Q 036679          156 CNKLYEFK---LDTPNLSVFDYEGDMVS------FSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLEC  226 (294)
Q Consensus       156 c~~l~~~~---~~~p~L~~l~~~g~~~~------~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~  226 (294)
                      |......+   ...++|+++++.++...      .+...++|+.+++.-..+..      .....++.+++|+. |.++.
T Consensus       434 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~-L~Ls~  506 (606)
T 3vq2_A          434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ------ISWGVFDTLHRLQL-LNMSH  506 (606)
T ss_dssp             SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE------ECTTTTTTCTTCCE-EECCS
T ss_pred             CCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCc------cChhhhcccccCCE-EECCC
Confidence            87543232   35688999999888652      23455778888773221110      01223456777777 57776


Q ss_pred             eeeeec-chhhhhccCCCCCCCceEEEEEccccchhhHHHHHHHHhhcCC-CCCeeEEeeCC
Q 036679          227 YAAAII-PRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISP-HAETLSIKCND  286 (294)
Q Consensus       227 ~~~~~~-p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P-~le~l~i~~~~  286 (294)
                      +....+ |..     ...+++|++|.+..|...   ..+   .. +...| .|++|.+...+
T Consensus       507 N~l~~~~~~~-----~~~l~~L~~L~l~~N~l~---~~p---~~-~~~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          507 NNLLFLDSSH-----YNQLYSLSTLDCSFNRIE---TSK---GI-LQHFPKSLAFFNLTNNS  556 (606)
T ss_dssp             SCCSCEEGGG-----TTTCTTCCEEECTTSCCC---CEE---SC-GGGSCTTCCEEECCSCC
T ss_pred             CcCCCcCHHH-----ccCCCcCCEEECCCCcCc---ccC---Hh-HhhhcccCcEEEccCCC
Confidence            655444 544     556789999999875332   111   22 55666 59999998864

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.43  E-value=5.2e-14  Score=122.80  Aligned_cols=259  Identities=14%  Similarity=0.083  Sum_probs=147.0

Q ss_pred             CCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCCcccccc-cCCcccEEE
Q 036679            9 LSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDRLARVSI-CGPNVRLVD   84 (294)
Q Consensus         9 l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~l~~~~~-~~~~L~~L~   84 (294)
                      .++|++|++++|.+.+- .+..+..+++|++|++++|. +..+   .+.++++|++|+++++. +..+.. ..++|++|+
T Consensus        53 ~~~l~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~L~~L~  129 (332)
T 2ft3_A           53 SPDTTLLDLQNNDISEL-RKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLPSSLVELR  129 (332)
T ss_dssp             CTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCCTTCCEEE
T ss_pred             CCCCeEEECCCCcCCcc-CHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCCc-CCccCccccccCCEEE
Confidence            35777777777766431 12235677788888887764 3333   24566778888887764 222211 126788888


Q ss_pred             eeCCCCCc--ccccccccccceEEecccccChHH-HHHHhcCCCCCcEEeecccccceeecccc-cccceEEeecccCce
Q 036679           85 ISSLHAPC--GINVALCKNLKELKLFKLSITNEW-LCNQFSELPFLEYLEIFRCMKIRSIKISS-PYLKKLLVRFCNKLY  160 (294)
Q Consensus        85 l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~-l~~l~~~~~~L~~L~l~~c~~l~~l~i~~-~~L~~L~l~~c~~l~  160 (294)
                      ++++....  +..+..+++|++|+++++.+++.+ ....+..+ +|+.|+++++. ++.++... ++|++|+++++... 
T Consensus       130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~i~-  206 (332)
T 2ft3_A          130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLPETLNELHLDHNKIQ-  206 (332)
T ss_dssp             CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSCSSCSCCBCCSSCCC-
T ss_pred             CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCccccCCCCEEECCCCcCC-
Confidence            87776321  123567778888888887765321 12223334 77778877754 44433222 57888888877532 


Q ss_pred             eee----ccCCCccEEEEcCceee-----eecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEEeeeeeee
Q 036679          161 EFK----LDTPNLSVFDYEGDMVS-----FSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAI  231 (294)
Q Consensus       161 ~~~----~~~p~L~~l~~~g~~~~-----~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~~  231 (294)
                      .+.    ...++|+.|+++++.+.     .+...++|+.+.+....+.       .++..+..+++|+. |.++.+....
T Consensus       207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~lp~~l~~l~~L~~-L~l~~N~l~~  278 (332)
T 2ft3_A          207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-------RVPAGLPDLKLLQV-VYLHTNNITK  278 (332)
T ss_dssp             CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-------BCCTTGGGCTTCCE-EECCSSCCCB
T ss_pred             ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-------ecChhhhcCccCCE-EECCCCCCCc
Confidence            222    24578888888877551     2334566777766322211       11222455667777 4777666666


Q ss_pred             cchhhhhcc--CCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEeeC
Q 036679          232 IPRELREIL--SSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCN  285 (294)
Q Consensus       232 ~p~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~~~  285 (294)
                      ++.......  ...+.+|++|.+..+...    ...+.......++.|+.+.+...
T Consensus       279 ~~~~~~~~~~~~~~~~~l~~L~l~~N~~~----~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          279 VGVNDFCPVGFGVKRAYYNGISLFNNPVP----YWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             CCTTSSSCSSCCSSSCCBSEEECCSSSSC----GGGSCGGGGTTBCCSTTEEC---
T ss_pred             cChhHccccccccccccccceEeecCccc----ccccCcccccccchhhhhhcccc
Confidence            655432211  112567888888764221    11222344677888888877653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.42  E-value=1.4e-13  Score=122.63  Aligned_cols=122  Identities=16%  Similarity=0.116  Sum_probs=80.6

Q ss_pred             CCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCCcccc----cccCCc
Q 036679            7 VTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDRLARV----SICGPN   79 (294)
Q Consensus         7 ~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~l~~~----~~~~~~   79 (294)
                      ..+++|++|+|++|.+.+. ....+..+++|++|+++++. +..+   .+.++++|++|+++++. +..+    ....++
T Consensus        66 ~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~  142 (390)
T 3o6n_A           66 DSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPK  142 (390)
T ss_dssp             HHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred             cccccCcEEECCCCccccc-ChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCC
Confidence            4578899999988877542 12236778889999988875 3222   24567888888888875 2222    124678


Q ss_pred             ccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeeccc
Q 036679           80 VRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRC  135 (294)
Q Consensus        80 L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c  135 (294)
                      |++|++++|....  +..+..+++|++|+++++.+++..    +..+++|+.|+++++
T Consensus       143 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~L~~L~l~~n  196 (390)
T 3o6n_A          143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYN  196 (390)
T ss_dssp             CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC----GGGCTTCSEEECCSS
T ss_pred             CcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc----cccccccceeecccc
Confidence            8888888886332  233667788888888888776532    344666666666653

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.41  E-value=6.7e-13  Score=120.89  Aligned_cols=141  Identities=15%  Similarity=0.157  Sum_probs=94.6

Q ss_pred             CCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCCcccccc-cCCcccEEE
Q 036679            6 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVSI-CGPNVRLVD   84 (294)
Q Consensus         6 ~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~l~~~~~-~~~~L~~L~   84 (294)
                      +..+++|++|++++|.+++  ++  ++.+++|++|+++++. +..+++..+++|++|++++|..+..+.+ ..++|+.|+
T Consensus       102 ~~~l~~L~~L~L~~N~l~~--l~--~~~l~~L~~L~l~~N~-l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~  176 (457)
T 3bz5_A          102 VTPLTKLTYLNCDTNKLTK--LD--VSQNPLLTYLNCARNT-LTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLD  176 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSC--CC--CTTCTTCCEEECTTSC-CSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEE
T ss_pred             cCCCCcCCEEECCCCcCCe--ec--CCCCCcCCEEECCCCc-cceeccccCCcCCEEECCCCCcccccccccCCcCCEEE
Confidence            5678899999999998754  22  6788899999998874 4445677778888888888764444322 356788888


Q ss_pred             eeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccc-cccceEEeeccc
Q 036679           85 ISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISS-PYLKKLLVRFCN  157 (294)
Q Consensus        85 l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~-~~L~~L~l~~c~  157 (294)
                      +++|.... ..+..+++|+.|+++++.+++.    -+..+++|+.|+++++. ++.+++.. ++|++|+++++.
T Consensus       177 ls~n~l~~-l~l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~N~-l~~ip~~~l~~L~~L~l~~N~  244 (457)
T 3bz5_A          177 CSFNKITE-LDVSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNK-LTEIDVTPLTQLTYFDCSVNP  244 (457)
T ss_dssp             CCSSCCCC-CCCTTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECCSSC-CSCCCCTTCTTCSEEECCSSC
T ss_pred             CCCCccce-eccccCCCCCEEECcCCcCCee----ccccCCCCCEEECcCCc-ccccCccccCCCCEEEeeCCc
Confidence            87776332 1255667777777777766653    14566777777777643 44444332 567777776654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.40  E-value=2e-13  Score=118.20  Aligned_cols=169  Identities=12%  Similarity=0.040  Sum_probs=112.5

Q ss_pred             CCccEEEeeecccCh-HHHHHHHhcCCCCCEEEEEcCCCCC-ee--ccCCCCCccEEEccccCCc---ccccccCCcccE
Q 036679           10 SSLRELGLFKCAAND-EAIRDIVAGCPLIERLKIIDCRGLK-SL--EFLNLGKLSKFMVRNEDRL---ARVSICGPNVRL   82 (294)
Q Consensus        10 ~~Lk~L~L~~~~~~~-~~l~~~~~~~~~Le~L~L~~c~~l~-~l--~~~~l~~L~~L~l~~c~~l---~~~~~~~~~L~~   82 (294)
                      .+++.|+|+++.+++ ..++..+..+++|++|+++++..+. .+  .+.++++|++|+++++.--   .......++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            579999999998864 0234457889999999999643332 12  3567789999999887521   111224678999


Q ss_pred             EEeeCCCCC--cccccccccccceEEecccccChHHHHHHhcCCC-CCcEEeecccccceeecc--cccccceEEeeccc
Q 036679           83 VDISSLHAP--CGINVALCKNLKELKLFKLSITNEWLCNQFSELP-FLEYLEIFRCMKIRSIKI--SSPYLKKLLVRFCN  157 (294)
Q Consensus        83 L~l~~c~~~--~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~-~L~~L~l~~c~~l~~l~i--~~~~L~~L~l~~c~  157 (294)
                      |++++|.+.  .+..+..+++|++|+++++.+++. ++..+..++ .|+.|+++++.--..++.  ...+|++|+++++.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA-IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE-CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCc-CCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCc
Confidence            999888732  344567788999999998887643 344466676 899999988653222221  12248888888875


Q ss_pred             Cceeee---ccCCCccEEEEcCcee
Q 036679          158 KLYEFK---LDTPNLSVFDYEGDMV  179 (294)
Q Consensus       158 ~l~~~~---~~~p~L~~l~~~g~~~  179 (294)
                      .....+   ...++|+.++++++..
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l  233 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEE
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCce
Confidence            332222   2456778888777654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.40  E-value=1.5e-12  Score=122.63  Aligned_cols=100  Identities=14%  Similarity=0.065  Sum_probs=57.4

Q ss_pred             CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCCcccccccCCccc
Q 036679            2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVSICGPNVR   81 (294)
Q Consensus         2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~   81 (294)
                      +|..+.  ++|++|+|++|.++.  ++.   .+++|++|++++|. +..+.- .+++|++|+++++. +..+....++|+
T Consensus        55 lp~~l~--~~L~~L~L~~N~l~~--lp~---~l~~L~~L~Ls~N~-l~~lp~-~l~~L~~L~Ls~N~-l~~l~~~l~~L~  124 (622)
T 3g06_A           55 LPDCLP--AHITTLVIPDNNLTS--LPA---LPPELRTLEVSGNQ-LTSLPV-LPPGLLELSIFSNP-LTHLPALPSGLC  124 (622)
T ss_dssp             CCSCCC--TTCSEEEECSCCCSC--CCC---CCTTCCEEEECSCC-CSCCCC-CCTTCCEEEECSCC-CCCCCCCCTTCC
T ss_pred             cChhhC--CCCcEEEecCCCCCC--CCC---cCCCCCEEEcCCCc-CCcCCC-CCCCCCEEECcCCc-CCCCCCCCCCcC
Confidence            454443  788888888887742  221   56788888888874 444432 45677777777663 222222445666


Q ss_pred             EEEeeCCCCCcccccccccccceEEecccccC
Q 036679           82 LVDISSLHAPCGINVALCKNLKELKLFKLSIT  113 (294)
Q Consensus        82 ~L~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~  113 (294)
                      .|++++|.+....  ..+++|++|++++|.++
T Consensus       125 ~L~L~~N~l~~lp--~~l~~L~~L~Ls~N~l~  154 (622)
T 3g06_A          125 KLWIFGNQLTSLP--VLPPGLQELSVSDNQLA  154 (622)
T ss_dssp             EEECCSSCCSCCC--CCCTTCCEEECCSSCCS
T ss_pred             EEECCCCCCCcCC--CCCCCCCEEECcCCcCC
Confidence            6666666522110  12355666666665544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.39  E-value=1.7e-12  Score=112.53  Aligned_cols=204  Identities=14%  Similarity=0.084  Sum_probs=112.4

Q ss_pred             CCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCCccccc-------------
Q 036679            8 TLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVS-------------   74 (294)
Q Consensus         8 ~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~l~~~~-------------   74 (294)
                      .+++|++|+|++|.+++. .+..+..+++|++|++++|.--....+..+++|++|++++|. +..+.             
T Consensus        32 ~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~L~~L~l~~n  109 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY-VQELLVGPSIETLHAANN  109 (317)
T ss_dssp             TGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSE-EEEEEECTTCCEEECCSS
T ss_pred             cCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCc-cccccCCCCcCEEECCCC
Confidence            356899999999988642 234568889999999988753222335566677777776663 21111             


Q ss_pred             -------ccCCcccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc-
Q 036679           75 -------ICGPNVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS-  144 (294)
Q Consensus        75 -------~~~~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~-  144 (294)
                             ...++|+.|++++|....  +..+..+++|++|+++++.+++.....+...+++|+.|+++++. ++.+... 
T Consensus       110 ~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~  188 (317)
T 3o53_A          110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQV  188 (317)
T ss_dssp             CCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCC
T ss_pred             ccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccccccc
Confidence                   123455555555554221  12344566677777776665543223333456677777776643 3333211 


Q ss_pred             -ccccceEEeecccCceeee---ccCCCccEEEEcCceeee----ecCccccceEEEEEEEeccChhHH-HHHHHHHhcC
Q 036679          145 -SPYLKKLLVRFCNKLYEFK---LDTPNLSVFDYEGDMVSF----SSNALALSETSLCLDSINVDNQWL-VKFIELLAKL  215 (294)
Q Consensus       145 -~~~L~~L~l~~c~~l~~~~---~~~p~L~~l~~~g~~~~~----~~~~~~L~~~~i~~~~~~~~~~~~-~~~~~~l~~l  215 (294)
                       .++|++|+++++. ++.++   ...++|+.++++++.+..    +...++|+.+.+.-      +.+. ..+..++..+
T Consensus       189 ~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~------N~~~~~~~~~~~~~~  261 (317)
T 3o53_A          189 VFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG------NGFHCGTLRDFFSKN  261 (317)
T ss_dssp             CCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTT------CCCBHHHHHHHHHTC
T ss_pred             ccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccC------CCccCcCHHHHHhcc
Confidence             2567777776664 22332   234667777777665411    22334555555521      1111 2345566666


Q ss_pred             ccccee
Q 036679          216 NHCSNV  221 (294)
Q Consensus       216 ~~l~~L  221 (294)
                      +.++.|
T Consensus       262 ~~L~~l  267 (317)
T 3o53_A          262 QRVQTV  267 (317)
T ss_dssp             HHHHHH
T ss_pred             ccceEE
Confidence            666664

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.39  E-value=5.3e-13  Score=118.81  Aligned_cols=229  Identities=13%  Similarity=0.050  Sum_probs=130.7

Q ss_pred             CCCCCCccEEEeeecccChHHHH---HHHhcCCCCCEEEEEcCC--CCC-----ee-----ccCCCCCccEEEccccCCc
Q 036679            6 NVTLSSLRELGLFKCAANDEAIR---DIVAGCPLIERLKIIDCR--GLK-----SL-----EFLNLGKLSKFMVRNEDRL   70 (294)
Q Consensus         6 ~~~l~~Lk~L~L~~~~~~~~~l~---~~~~~~~~Le~L~L~~c~--~l~-----~l-----~~~~l~~L~~L~l~~c~~l   70 (294)
                      +..+++|++|+|++|.+++....   ..+..+++|++|++++|.  .+.     .+     .+..+++|++|+++++.--
T Consensus        28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  107 (386)
T 2ca6_A           28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  107 (386)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence            34567888888888888765443   335578888888888873  221     01     0245678888888877511


Q ss_pred             c----cc---cccCCcccEEEeeCCCCCcc------cccccc---------cccceEEecccccChHHHH---HHhcCCC
Q 036679           71 A----RV---SICGPNVRLVDISSLHAPCG------INVALC---------KNLKELKLFKLSITNEWLC---NQFSELP  125 (294)
Q Consensus        71 ~----~~---~~~~~~L~~L~l~~c~~~~~------~~~~~~---------~~L~~L~L~~~~i~~~~l~---~l~~~~~  125 (294)
                      .    .+   ...+++|++|++++|.+...      ..+..+         ++|++|+++++.+++..++   ..+..++
T Consensus       108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~  187 (386)
T 2ca6_A          108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR  187 (386)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence            1    11   12457788888888764211      112223         6788888888877754444   4455677


Q ss_pred             CCcEEeeccccccee-----e---cc-cccccceEEeecccCc----eeee---ccCCCccEEEEcCceeeeecCccccc
Q 036679          126 FLEYLEIFRCMKIRS-----I---KI-SSPYLKKLLVRFCNKL----YEFK---LDTPNLSVFDYEGDMVSFSSNALALS  189 (294)
Q Consensus       126 ~L~~L~l~~c~~l~~-----l---~i-~~~~L~~L~l~~c~~l----~~~~---~~~p~L~~l~~~g~~~~~~~~~~~L~  189 (294)
                      +|+.|++++|. ++.     +   .+ ..++|++|++++|..-    ..++   ...|+|+.|+++++.+          
T Consensus       188 ~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i----------  256 (386)
T 2ca6_A          188 LLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL----------  256 (386)
T ss_dssp             TCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC----------
T ss_pred             CcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC----------
Confidence            88888888763 321     1   11 1256777777776531    1111   2345666666665432          


Q ss_pred             eEEEEEEEeccChhHHHHHHHHHhc--CcccceeEEEeeeeeee-----cchhhhhccCCCCCCCceEEEEEccccchh
Q 036679          190 ETSLCLDSINVDNQWLVKFIELLAK--LNHCSNVLNLECYAAAI-----IPRELREILSSPLTYENHVCFIINSEYNTF  261 (294)
Q Consensus       190 ~~~i~~~~~~~~~~~~~~~~~~l~~--l~~l~~LL~~~~~~~~~-----~p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~  261 (294)
                                 .......+.+.+..  +++|+.| .++.+....     +|..+.    ..+++|++|.+..|......
T Consensus       257 -----------~~~~~~~l~~~l~~~~~~~L~~L-~L~~n~i~~~g~~~l~~~l~----~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          257 -----------SARGAAAVVDAFSKLENIGLQTL-RLQYNEIELDAVRTLKTVID----EKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             -----------CHHHHHHHHHHHHTCSSCCCCEE-ECCSSCCBHHHHHHHHHHHH----HHCTTCCEEECTTSBSCTTS
T ss_pred             -----------chhhHHHHHHHHhhccCCCeEEE-ECcCCcCCHHHHHHHHHHHH----hcCCCceEEEccCCcCCcch
Confidence                       11111223344433  6777774 666554433     555532    23578888888875443333

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.38  E-value=6.6e-13  Score=121.89  Aligned_cols=231  Identities=14%  Similarity=0.111  Sum_probs=144.6

Q ss_pred             CCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCCcccccccCCcccEEEeeC
Q 036679            8 TLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVSICGPNVRLVDISS   87 (294)
Q Consensus         8 ~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~   87 (294)
                      .+++|++|+|++|.+++. .+..+..+++|++|++++|.--...++.++++|++|++++|. +..+. ..++|+.|++++
T Consensus        32 ~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~-l~~l~-~~~~L~~L~L~~  108 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY-VQELL-VGPSIETLHAAN  108 (487)
T ss_dssp             TGGGCCEEECCSSCCCCC-CGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSE-EEEEE-ECTTCCEEECCS
T ss_pred             cCCCccEEEeeCCcCCCC-CHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCc-CCCCC-CCCCcCEEECcC
Confidence            355888888888877542 223467888888888888753223446677888888888874 33332 237888888888


Q ss_pred             CCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec---c--cccccceEEeecccCceee
Q 036679           88 LHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK---I--SSPYLKKLLVRFCNKLYEF  162 (294)
Q Consensus        88 c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~---i--~~~~L~~L~l~~c~~l~~~  162 (294)
                      |.+... ....+++|+.|+++++.+++. .+..++++++|+.|+++++. ++.+.   +  ..++|++|++++|.. +.+
T Consensus       109 N~l~~~-~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l-~~~  184 (487)
T 3oja_A          109 NNISRV-SCSRGQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFI-YDV  184 (487)
T ss_dssp             SCCCCE-EECCCSSCEEEECCSSCCCSG-GGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCC-CEE
T ss_pred             CcCCCC-CccccCCCCEEECCCCCCCCC-CchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCcc-ccc
Confidence            874322 123567888888888887653 23345667888888888754 33322   1  126788888888763 333


Q ss_pred             e--ccCCCccEEEEcCceeeeecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEEeeeeeeecchhhhhcc
Q 036679          163 K--LDTPNLSVFDYEGDMVSFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAIIPRELREIL  240 (294)
Q Consensus       163 ~--~~~p~L~~l~~~g~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~~~p~~~~~~~  240 (294)
                      +  ...++|+.|+++++.+         +.+         .        .-+..+++|+. |+++.+....+|..     
T Consensus       185 ~~~~~l~~L~~L~Ls~N~l---------~~~---------~--------~~~~~l~~L~~-L~Ls~N~l~~lp~~-----  232 (487)
T 3oja_A          185 KGQVVFAKLKTLDLSSNKL---------AFM---------G--------PEFQSAAGVTW-ISLRNNKLVLIEKA-----  232 (487)
T ss_dssp             ECCCCCTTCCEEECCSSCC---------CEE---------C--------GGGGGGTTCSE-EECTTSCCCEECTT-----
T ss_pred             cccccCCCCCEEECCCCCC---------CCC---------C--------HhHcCCCCccE-EEecCCcCcccchh-----
Confidence            2  2356777777776533         110         0        01345677777 57777766677776     


Q ss_pred             CCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEE
Q 036679          241 SSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSI  282 (294)
Q Consensus       241 ~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i  282 (294)
                      ...+++|++|.+..|...   +  +.+...+..+|.++++.+
T Consensus       233 l~~l~~L~~L~l~~N~l~---c--~~~~~~~~~l~~L~~l~~  269 (487)
T 3oja_A          233 LRFSQNLEHFDLRGNGFH---C--GTLRDFFSKNQRVQTVAK  269 (487)
T ss_dssp             CCCCTTCCEEECTTCCBC---H--HHHHHHHTTCHHHHHHHH
T ss_pred             hccCCCCCEEEcCCCCCc---C--cchHHHHHhCCCCcEEec
Confidence            456789999999764331   0  112233455555555554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.38  E-value=4.1e-13  Score=128.01  Aligned_cols=64  Identities=11%  Similarity=0.002  Sum_probs=33.0

Q ss_pred             hcCcccceeEEEeeeeeeecchhhhhccCCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEeeCC
Q 036679          213 AKLNHCSNVLNLECYAAAIIPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCND  286 (294)
Q Consensus       213 ~~l~~l~~LL~~~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~~~~  286 (294)
                      +++++|+. |+++.+....+|++.    ...+++|++|.|..|......  ...+   -...|.|+++.+.+.+
T Consensus       557 ~~l~~L~~-L~Ls~N~l~~l~~~~----~~~l~~L~~L~L~~N~l~~~~--~~~~---~~~~~~L~~l~l~~N~  620 (680)
T 1ziw_A          557 KDLFELKI-IDLGLNNLNTLPASV----FNNQVSLKSLNLQKNLITSVE--KKVF---GPAFRNLTELDMRFNP  620 (680)
T ss_dssp             TTCTTCCE-EECCSSCCCCCCTTT----TTTCTTCCEEECTTSCCCBCC--HHHH---HHHHTTCSEEECTTCC
T ss_pred             ccccCcce-eECCCCCCCcCCHhH----hCCCCCCCEEECCCCcCCccC--hhHh---cccccccCEEEccCCC
Confidence            34444555 355555555555442    234567777777654332111  1111   1245788888887753

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.37  E-value=3e-12  Score=119.34  Aligned_cols=169  Identities=17%  Similarity=0.177  Sum_probs=112.7

Q ss_pred             CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccCCcccc----c
Q 036679            2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARV----S   74 (294)
Q Consensus         2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~~l~~~----~   74 (294)
                      +|..+  .+++++|+|++|.+++-. ...+.++++|++|++++|. +..+.   +.++++|++|+++++. +..+    .
T Consensus        22 ip~~l--~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~   96 (570)
T 2z63_A           22 IPDNL--PFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAF   96 (570)
T ss_dssp             CCSSS--CSSCCEEECCSCCCCEEC-TTTTTTCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTT
T ss_pred             cCCCc--cccccEEEccCCccCccC-hhHhhCCCCceEEECCCCc-CCccCcccccCchhCCEEeCcCCc-CCccCHhhh
Confidence            45433  368999999999875421 2246789999999999984 54443   5678899999999885 2221    2


Q ss_pred             ccCCcccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccc----ccc
Q 036679           75 ICGPNVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISS----PYL  148 (294)
Q Consensus        75 ~~~~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~----~~L  148 (294)
                      ..+++|++|+++++....  ...++.+++|++|+++++.+++..++..++++++|+.|+++++. ++.+....    ++|
T Consensus        97 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L  175 (570)
T 2z63_A           97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQM  175 (570)
T ss_dssp             TTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTC
T ss_pred             cCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhcc
Confidence            256889999999887432  23477889999999999887653345567889999999999864 44432221    345


Q ss_pred             ----ceEEeecccCceeee---ccCCCccEEEEcCc
Q 036679          149 ----KKLLVRFCNKLYEFK---LDTPNLSVFDYEGD  177 (294)
Q Consensus       149 ----~~L~l~~c~~l~~~~---~~~p~L~~l~~~g~  177 (294)
                          +.++++++.. +.+.   +...+|+.+++.++
T Consensus       176 ~~~~~~L~l~~n~l-~~~~~~~~~~~~L~~L~l~~n  210 (570)
T 2z63_A          176 PLLNLSLDLSLNPM-NFIQPGAFKEIRLHKLTLRNN  210 (570)
T ss_dssp             TTCCCEEECTTCCC-CEECTTTTTTCEEEEEEEESC
T ss_pred             chhhhhcccCCCCc-eecCHHHhccCcceeEecccc
Confidence                6677776653 2222   12234666665543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.37  E-value=3.9e-13  Score=125.34  Aligned_cols=236  Identities=16%  Similarity=0.153  Sum_probs=122.2

Q ss_pred             CCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCCccccc-ccCCccc
Q 036679            3 PTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVS-ICGPNVR   81 (294)
Q Consensus         3 p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~l~~~~-~~~~~L~   81 (294)
                      |..+..+++|++|+++++.+..  ++..+..+ +|++|++++|. +..+....+++|++|+++++....... ..+++|+
T Consensus       275 ~~~~~~l~~L~~L~l~~~~l~~--l~~~~~~~-~L~~L~l~~n~-~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~  350 (570)
T 2z63_A          275 IDLFNCLTNVSSFSLVSVTIER--VKDFSYNF-GWQHLELVNCK-FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLE  350 (570)
T ss_dssp             TTTTGGGTTCSEEEEESCEECS--CCBCCSCC-CCSEEEEESCB-CSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCC
T ss_pred             hhhhcCcCcccEEEecCccchh--hhhhhccC-CccEEeeccCc-ccccCcccccccCEEeCcCCccccccccccCCCCC
Confidence            4445556777777777776542  33334455 67777777664 223333455677777777665222111 3456777


Q ss_pred             EEEeeCCCCCc----ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec---c-cccccceEEe
Q 036679           82 LVDISSLHAPC----GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK---I-SSPYLKKLLV  153 (294)
Q Consensus        82 ~L~l~~c~~~~----~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~---i-~~~~L~~L~l  153 (294)
                      .|++++|....    +..+..+++|++|+++++.+++.  ...+..+++|+.|+++++.-.....   . ..++|++|++
T Consensus       351 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  428 (570)
T 2z63_A          351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM--SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI  428 (570)
T ss_dssp             EEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE--EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred             EEeCcCCccCccccccccccccCccCEEECCCCccccc--cccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence            77777765321    12345667777777777665432  1115567777777777654221111   1 1256777777


Q ss_pred             ecccCceeee---ccCCCccEEEEcCceee------eecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEE
Q 036679          154 RFCNKLYEFK---LDTPNLSVFDYEGDMVS------FSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNL  224 (294)
Q Consensus       154 ~~c~~l~~~~---~~~p~L~~l~~~g~~~~------~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~  224 (294)
                      ++|......+   ...++|+.+++.++...      .+...++|+.+++.-..+...      ....+..+++|+. |.+
T Consensus       429 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~-L~l  501 (570)
T 2z63_A          429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL------SPTAFNSLSSLQV-LNM  501 (570)
T ss_dssp             TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE------CTTTTTTCTTCCE-EEC
T ss_pred             cCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccC------ChhhhhcccCCCE-EeC
Confidence            7765332222   23567777777766441      123344555555521111000      0112334555555 355


Q ss_pred             eeeeeeecchhhhhccCCCCCCCceEEEEEc
Q 036679          225 ECYAAAIIPRELREILSSPLTYENHVCFIIN  255 (294)
Q Consensus       225 ~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~  255 (294)
                      +.+....+|.+.    ...+++|++|.+..|
T Consensus       502 ~~n~l~~~~~~~----~~~l~~L~~L~l~~N  528 (570)
T 2z63_A          502 ASNQLKSVPDGI----FDRLTSLQKIWLHTN  528 (570)
T ss_dssp             CSSCCSCCCTTT----TTTCTTCCEEECCSS
T ss_pred             CCCcCCCCCHHH----hhcccCCcEEEecCC
Confidence            544444444321    334566666666654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.37  E-value=6.4e-12  Score=108.49  Aligned_cols=175  Identities=20%  Similarity=0.203  Sum_probs=86.3

Q ss_pred             CCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccC--CcccccccCCcccEEEe
Q 036679            9 LSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNED--RLARVSICGPNVRLVDI   85 (294)
Q Consensus         9 l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l   85 (294)
                      +++|++|+++++.+.+  ++ -+..+++|++|++++|. +..+ .+.++++|++|+++++.  .+.. ....++|+.|++
T Consensus        40 l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l  114 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQ-ITDLAPLKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDL  114 (308)
T ss_dssp             HHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSC-CCCCGGGTTCCSCCEEECCSCCCSCCGG-GTTCTTCCEEEC
T ss_pred             cCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCc-CCCChhHccCCCCCEEEccCCcCCCchh-hcCCCCCCEEEC
Confidence            5566666666665543  11 14556666666666653 2211 14455666666666654  1111 113456666666


Q ss_pred             eCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec-ccc-cccceEEeecccCceeee
Q 036679           86 SSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK-ISS-PYLKKLLVRFCNKLYEFK  163 (294)
Q Consensus        86 ~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~-i~~-~~L~~L~l~~c~~l~~~~  163 (294)
                      ++|.......+..+++|++|+++++.+++.  .. +..+++|+.|+++++. ++.+. +.. ++|++|+++++.. +.++
T Consensus       115 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l-~~~~  189 (308)
T 1h6u_A          115 TSTQITDVTPLAGLSNLQVLYLDLNQITNI--SP-LAGLTNLQYLSIGNAQ-VSDLTPLANLSKLTTLKADDNKI-SDIS  189 (308)
T ss_dssp             TTSCCCCCGGGTTCTTCCEEECCSSCCCCC--GG-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCC-CCCG
T ss_pred             CCCCCCCchhhcCCCCCCEEECCCCccCcC--cc-ccCCCCccEEEccCCc-CCCChhhcCCCCCCEEECCCCcc-CcCh
Confidence            666532222345556666666666655432  11 4455666666666542 33222 111 4566666655542 2222


Q ss_pred             --ccCCCccEEEEcCcee---eeecCccccceEEE
Q 036679          164 --LDTPNLSVFDYEGDMV---SFSSNALALSETSL  193 (294)
Q Consensus       164 --~~~p~L~~l~~~g~~~---~~~~~~~~L~~~~i  193 (294)
                        ...++|+.++++++.+   ..+...++|+.+.+
T Consensus       190 ~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l  224 (308)
T 1h6u_A          190 PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTL  224 (308)
T ss_dssp             GGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEE
T ss_pred             hhcCCCCCCEEEccCCccCccccccCCCCCCEEEc
Confidence              2345566666655544   11233445555555

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.35  E-value=3.9e-12  Score=119.80  Aligned_cols=217  Identities=17%  Similarity=0.088  Sum_probs=152.3

Q ss_pred             CCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCCcccccccCCcccEEEeeC
Q 036679            8 TLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVSICGPNVRLVDISS   87 (294)
Q Consensus         8 ~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~   87 (294)
                      .+++|++|+|++|.++.  ++   ..+++|++|++++|. +..+.- .+++|+.|+++++. +..+....++|++|++++
T Consensus        79 ~l~~L~~L~Ls~N~l~~--lp---~~l~~L~~L~Ls~N~-l~~l~~-~l~~L~~L~L~~N~-l~~lp~~l~~L~~L~Ls~  150 (622)
T 3g06_A           79 LPPELRTLEVSGNQLTS--LP---VLPPGLLELSIFSNP-LTHLPA-LPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSD  150 (622)
T ss_dssp             CCTTCCEEEECSCCCSC--CC---CCCTTCCEEEECSCC-CCCCCC-CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCS
T ss_pred             cCCCCCEEEcCCCcCCc--CC---CCCCCCCEEECcCCc-CCCCCC-CCCCcCEEECCCCC-CCcCCCCCCCCCEEECcC
Confidence            57899999999998853  22   278999999999874 444432 46789999999874 444444568999999999


Q ss_pred             CCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccccccceEEeecccCceeeeccCC
Q 036679           88 LHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISSPYLKKLLVRFCNKLYEFKLDTP  167 (294)
Q Consensus        88 c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~~~L~~L~l~~c~~l~~~~~~~p  167 (294)
                      |.+....  ...++|+.|++.++.++.  ++   ..+++|+.|+++++. ++.++...++|+.|++.+|. ++.++...+
T Consensus       151 N~l~~l~--~~~~~L~~L~L~~N~l~~--l~---~~~~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~-l~~l~~~~~  221 (622)
T 3g06_A          151 NQLASLP--ALPSELCKLWAYNNQLTS--LP---MLPSGLQELSVSDNQ-LASLPTLPSELYKLWAYNNR-LTSLPALPS  221 (622)
T ss_dssp             SCCSCCC--CCCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSSCCCCCT
T ss_pred             CcCCCcC--CccCCCCEEECCCCCCCC--Cc---ccCCCCcEEECCCCC-CCCCCCccchhhEEECcCCc-ccccCCCCC
Confidence            8743211  245789999999988775  22   567899999999854 55555445789999998875 445555568


Q ss_pred             CccEEEEcCceeee-ecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEEeeeeeeecchhhhhccCCCCCC
Q 036679          168 NLSVFDYEGDMVSF-SSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAIIPRELREILSSPLTY  246 (294)
Q Consensus       168 ~L~~l~~~g~~~~~-~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~~~p~~~~~~~~~~f~~  246 (294)
                      +|++|+++++.+.. ....++|+.+.+..+.+          ..++..+++|+. |.++.+....+|..     ...+++
T Consensus       222 ~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L----------~~lp~~~~~L~~-L~Ls~N~L~~lp~~-----l~~l~~  285 (622)
T 3g06_A          222 GLKELIVSGNRLTSLPVLPSELKELMVSGNRL----------TSLPMLPSGLLS-LSVYRNQLTRLPES-----LIHLSS  285 (622)
T ss_dssp             TCCEEECCSSCCSCCCCCCTTCCEEECCSSCC----------SCCCCCCTTCCE-EECCSSCCCSCCGG-----GGGSCT
T ss_pred             CCCEEEccCCccCcCCCCCCcCcEEECCCCCC----------CcCCcccccCcE-EeCCCCCCCcCCHH-----Hhhccc
Confidence            89999998886622 23456677777632211          112225677777 57777666678876     345788


Q ss_pred             CceEEEEEccc
Q 036679          247 ENHVCFIINSE  257 (294)
Q Consensus       247 Lk~L~L~~~~~  257 (294)
                      |+.|.|..|..
T Consensus       286 L~~L~L~~N~l  296 (622)
T 3g06_A          286 ETTVNLEGNPL  296 (622)
T ss_dssp             TCEEECCSCCC
T ss_pred             cCEEEecCCCC
Confidence            99999987543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.35  E-value=2.4e-12  Score=110.85  Aligned_cols=214  Identities=13%  Similarity=0.015  Sum_probs=122.9

Q ss_pred             CCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-----ccCCCCCccEEEccccC--CcccccccCCccc
Q 036679            9 LSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-----EFLNLGKLSKFMVRNED--RLARVSICGPNVR   81 (294)
Q Consensus         9 l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-----~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~   81 (294)
                      .++|++|+|++|.+++ .....+..+++|++|+++++. +...     .+.++++|++|+++++.  .+.......++|+
T Consensus        27 ~~~l~~L~L~~n~l~~-i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~  104 (306)
T 2z66_A           27 PSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE  104 (306)
T ss_dssp             CTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCC
T ss_pred             CCCCCEEECCCCccCc-cCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCCccccChhhcCCCCCCC
Confidence            3678888888887752 122345677888888887764 3221     22346778888887764  1111122457778


Q ss_pred             EEEeeCCCCC---cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccce-eecc--c-ccccceEEee
Q 036679           82 LVDISSLHAP---CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIR-SIKI--S-SPYLKKLLVR  154 (294)
Q Consensus        82 ~L~l~~c~~~---~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~-~l~i--~-~~~L~~L~l~  154 (294)
                      +|+++++...   ....+..+++|++|+++++.+++. ....+..+++|+.|+++++.-.. .++.  . .++|++|+++
T Consensus       105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls  183 (306)
T 2z66_A          105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS  183 (306)
T ss_dssp             EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC-STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred             EEECCCCcccccccchhhhhccCCCEEECCCCcCCcc-chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECC
Confidence            8877777522   112456677788888877765542 23345667778888877754222 1111  1 1577777777


Q ss_pred             cccCceeee----ccCCCccEEEEcCceeeeecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEEeeeeee
Q 036679          155 FCNKLYEFK----LDTPNLSVFDYEGDMVSFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAA  230 (294)
Q Consensus       155 ~c~~l~~~~----~~~p~L~~l~~~g~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~  230 (294)
                      +|.. +.+.    ...++|++|+++++.+.         .+         ..       ..++.+++|+. |+++.+...
T Consensus       184 ~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~---------~~---------~~-------~~~~~l~~L~~-L~L~~N~l~  236 (306)
T 2z66_A          184 QCQL-EQLSPTAFNSLSSLQVLNMSHNNFF---------SL---------DT-------FPYKCLNSLQV-LDYSLNHIM  236 (306)
T ss_dssp             TSCC-CEECTTTTTTCTTCCEEECTTSCCS---------BC---------CS-------GGGTTCTTCCE-EECTTSCCC
T ss_pred             CCCc-CCcCHHHhcCCCCCCEEECCCCccC---------cc---------Ch-------hhccCcccCCE-eECCCCCCc
Confidence            7653 3331    13456666666665331         00         00       01345677777 477765544


Q ss_pred             ec-chhhhhccCCCC-CCCceEEEEEccc
Q 036679          231 II-PRELREILSSPL-TYENHVCFIINSE  257 (294)
Q Consensus       231 ~~-p~~~~~~~~~~f-~~Lk~L~L~~~~~  257 (294)
                      .. |..     ...+ .+|++|.+..|..
T Consensus       237 ~~~~~~-----~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          237 TSKKQE-----LQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             BCSSSS-----CCCCCTTCCEEECTTCCE
T ss_pred             ccCHHH-----HHhhhccCCEEEccCCCe
Confidence            33 333     3344 4899999987644

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.35  E-value=1.2e-12  Score=114.01  Aligned_cols=256  Identities=16%  Similarity=0.125  Sum_probs=166.5

Q ss_pred             CCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccC--Cccc-ccccCCcccEE
Q 036679           10 SSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNED--RLAR-VSICGPNVRLV   83 (294)
Q Consensus        10 ~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~--~l~~-~~~~~~~L~~L   83 (294)
                      .+++.++++++.++.  ++.  .-.+.++.|+++++. +..+   .+.++++|++|+++++.  .+.. .....++|++|
T Consensus        31 c~l~~l~~~~~~l~~--lp~--~~~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (330)
T 1xku_A           31 CHLRVVQCSDLGLEK--VPK--DLPPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL  105 (330)
T ss_dssp             EETTEEECTTSCCCS--CCC--SCCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             CCCeEEEecCCCccc--cCc--cCCCCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence            378999998886642  221  124789999999985 4333   35678999999999885  2211 12246899999


Q ss_pred             EeeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeeccccccee--ec---cc-ccccceEEeeccc
Q 036679           84 DISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRS--IK---IS-SPYLKKLLVRFCN  157 (294)
Q Consensus        84 ~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~--l~---i~-~~~L~~L~l~~c~  157 (294)
                      +++++..... .....++|++|+++++.+++. ....+.++++|+.|+++++.. +.  +.   +. .++|++|+++++.
T Consensus       106 ~Ls~n~l~~l-~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~~l~~L~~L~l~~n~  182 (330)
T 1xku_A          106 YLSKNQLKEL-PEKMPKTLQELRVHENEITKV-RKSVFNGLNQMIVVELGTNPL-KSSGIENGAFQGMKKLSYIRIADTN  182 (330)
T ss_dssp             ECCSSCCSBC-CSSCCTTCCEEECCSSCCCBB-CHHHHTTCTTCCEEECCSSCC-CGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             ECCCCcCCcc-ChhhcccccEEECCCCccccc-CHhHhcCCccccEEECCCCcC-CccCcChhhccCCCCcCEEECCCCc
Confidence            9999874311 112237999999999987753 344578899999999998653 21  11   11 2789999999886


Q ss_pred             Cceeeec-cCCCccEEEEcCcee-----eeecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEEeeeeeee
Q 036679          158 KLYEFKL-DTPNLSVFDYEGDMV-----SFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAI  231 (294)
Q Consensus       158 ~l~~~~~-~~p~L~~l~~~g~~~-----~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~~  231 (294)
                      . +.++. ..++|++++++++.+     ..+...++|+.+.+....+....      ...+..+++|+. |.++.+....
T Consensus       183 l-~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~-L~L~~N~l~~  254 (330)
T 1xku_A          183 I-TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD------NGSLANTPHLRE-LHLNNNKLVK  254 (330)
T ss_dssp             C-CSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC------TTTGGGSTTCCE-EECCSSCCSS
T ss_pred             c-ccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC------hhhccCCCCCCE-EECCCCcCcc
Confidence            3 33432 237899999998865     12445667888877322211100      123556788888 5887777778


Q ss_pred             cchhhhhccCCCCCCCceEEEEEccccchhhHHHHHH--HHhhcCCCCCeeEEeeCCCC
Q 036679          232 IPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLD--SLLWISPHAETLSIKCNDCD  288 (294)
Q Consensus       232 ~p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~--~lL~~~P~le~l~i~~~~~~  288 (294)
                      +|++     ...+++|++|.+..|.......  ..+.  ......+.++.+.+.+.+.+
T Consensus       255 lp~~-----l~~l~~L~~L~l~~N~i~~~~~--~~f~~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          255 VPGG-----LADHKYIQVVYLHNNNISAIGS--NDFCPPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             CCTT-----TTTCSSCCEEECCSSCCCCCCT--TSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             CChh-----hccCCCcCEEECCCCcCCccCh--hhcCCcccccccccccceEeecCccc
Confidence            8876     5567899999998753321110  0010  11223578889998887653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.35  E-value=6.4e-12  Score=117.25  Aligned_cols=126  Identities=16%  Similarity=0.090  Sum_probs=91.7

Q ss_pred             CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccCCccccc-ccC
Q 036679            2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARVS-ICG   77 (294)
Q Consensus         2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~~l~~~~-~~~   77 (294)
                      +|...  .++|++|+|++|.+++- .+..+.++++|++|++++|. +..+.   +.++++|++|+++++. +..+. ...
T Consensus        46 ip~~~--~~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~l  120 (562)
T 3a79_B           46 VPKDL--PPRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHNR-LQNISCCPM  120 (562)
T ss_dssp             CCTTS--CTTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECTTSC-CCEECSCCC
T ss_pred             CCCCC--CCCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEEECCCCc-CCccCcccc
Confidence            56544  38999999999988542 12346889999999999884 54442   5677899999999886 22221 157


Q ss_pred             CcccEEEeeCCCCC---cccccccccccceEEecccccChHHHHHHhcCCCCC--cEEeecccc
Q 036679           78 PNVRLVDISSLHAP---CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFL--EYLEIFRCM  136 (294)
Q Consensus        78 ~~L~~L~l~~c~~~---~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L--~~L~l~~c~  136 (294)
                      ++|++|++++|...   .+..++.+++|++|+++++.+++..    +..+++|  +.|+++++.
T Consensus       121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L~L~~L~L~~n~  180 (562)
T 3a79_B          121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD----LLPVAHLHLSCILLDLVS  180 (562)
T ss_dssp             TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT----TGGGTTSCEEEEEEEESS
T ss_pred             ccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc----hhhhhhceeeEEEeeccc
Confidence            89999999999743   2346788899999999999887643    3344555  999888754

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.35  E-value=5.2e-12  Score=117.33  Aligned_cols=216  Identities=13%  Similarity=0.126  Sum_probs=138.0

Q ss_pred             CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccC--Ccccc-cc
Q 036679            2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNED--RLARV-SI   75 (294)
Q Consensus         2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~--~l~~~-~~   75 (294)
                      +|...  +++|++|+|++|.+++.. +..+.++++|++|+++++. +..+.   +.++++|++|+++++.  .+..- ..
T Consensus        20 ip~~~--~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~   95 (549)
T 2z81_A           20 IPSGL--TAAMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG   95 (549)
T ss_dssp             CCSCC--CTTCCEEECCSSCCCEEC-SSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT
T ss_pred             ccccC--CCCccEEECcCCccCccC-hhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEECCCCccCccCHHHhc
Confidence            56544  379999999999886421 2346889999999999984 44432   5678899999999885  22221 22


Q ss_pred             cCCcccEEEeeCCCCC---cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecc--c-ccccc
Q 036679           76 CGPNVRLVDISSLHAP---CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKI--S-SPYLK  149 (294)
Q Consensus        76 ~~~~L~~L~l~~c~~~---~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i--~-~~~L~  149 (294)
                      ..++|++|++++|...   .+..++.+++|++|+++++...+......+.++++|+.|+++++.--...+.  . .++|+
T Consensus        96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  175 (549)
T 2z81_A           96 PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH  175 (549)
T ss_dssp             TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred             cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCc
Confidence            5689999999999743   2345778899999999998732221123467789999999998653222221  1 26888


Q ss_pred             eEEeecccCceeee----ccCCCccEEEEcCceeee--------ecCccccceEEEEEEEeccChhHHHHHHHHHhcCcc
Q 036679          150 KLLVRFCNKLYEFK----LDTPNLSVFDYEGDMVSF--------SSNALALSETSLCLDSINVDNQWLVKFIELLAKLNH  217 (294)
Q Consensus       150 ~L~l~~c~~l~~~~----~~~p~L~~l~~~g~~~~~--------~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~  217 (294)
                      +|+++.+..- .++    -..++|+.++++++....        ....++++.+.+....  ........+.+.+..+++
T Consensus       176 ~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~--l~~~~~~~l~~~~~~~~~  252 (549)
T 2z81_A          176 HLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV--LTDESFNELLKLLRYILE  252 (549)
T ss_dssp             EEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE--EEHHHHHHHHGGGGGCTT
T ss_pred             eEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc--cchhHHHHHHHHhhhhcc
Confidence            8988877632 111    236789999988875511        1234567777763222  122222233344455666


Q ss_pred             cceeEEEe
Q 036679          218 CSNVLNLE  225 (294)
Q Consensus       218 l~~LL~~~  225 (294)
                      ++.+ .+.
T Consensus       253 L~~l-~l~  259 (549)
T 2z81_A          253 LSEV-EFD  259 (549)
T ss_dssp             CCEE-EEE
T ss_pred             cccc-ccc
Confidence            6664 444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.35  E-value=3.4e-12  Score=115.96  Aligned_cols=167  Identities=17%  Similarity=0.172  Sum_probs=85.7

Q ss_pred             CCcccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc----ccccce
Q 036679           77 GPNVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYLKK  150 (294)
Q Consensus        77 ~~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~~  150 (294)
                      .++|++|++++|.+..  +..+..+++|++|+++++.++.- ....+.++++|+.|++++|..++.+...    .++|++
T Consensus       122 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~  200 (452)
T 3zyi_A          122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY  200 (452)
T ss_dssp             CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCE
T ss_pred             cccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCccee-CHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCE
Confidence            3455555555554221  12244555666666666554431 1123445566666666665555554322    145666


Q ss_pred             EEeecccCceeee--ccCCCccEEEEcCcee-----eeecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEE
Q 036679          151 LLVRFCNKLYEFK--LDTPNLSVFDYEGDMV-----SFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLN  223 (294)
Q Consensus       151 L~l~~c~~l~~~~--~~~p~L~~l~~~g~~~-----~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~  223 (294)
                      |++++|.. +.++  ...++|+.|+++++.+     ..+.+.++|+.+.+....+....      ...+..+++|+. |+
T Consensus       201 L~L~~n~l-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~-L~  272 (452)
T 3zyi_A          201 LNLGMCNI-KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE------RNAFDGLASLVE-LN  272 (452)
T ss_dssp             EECTTSCC-SSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC------TTTTTTCTTCCE-EE
T ss_pred             EECCCCcc-cccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceEC------HHHhcCCCCCCE-EE
Confidence            66655542 2222  2345566666665543     12234445555554211110000      122456677777 57


Q ss_pred             EeeeeeeecchhhhhccCCCCCCCceEEEEEcc
Q 036679          224 LECYAAAIIPRELREILSSPLTYENHVCFIINS  256 (294)
Q Consensus       224 ~~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~~  256 (294)
                      ++.+....+|.+.    ...+++|++|.|..|.
T Consensus       273 L~~N~l~~~~~~~----~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          273 LAHNNLSSLPHDL----FTPLRYLVELHLHHNP  301 (452)
T ss_dssp             CCSSCCSCCCTTS----STTCTTCCEEECCSSC
T ss_pred             CCCCcCCccChHH----hccccCCCEEEccCCC
Confidence            7777666777652    4567899999998763

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.34  E-value=3.9e-12  Score=115.21  Aligned_cols=40  Identities=20%  Similarity=0.360  Sum_probs=27.5

Q ss_pred             HhcCcccceeEEEeeeeeeecchhhhhccCCCCCCCceEEEEEcc
Q 036679          212 LAKLNHCSNVLNLECYAAAIIPRELREILSSPLTYENHVCFIINS  256 (294)
Q Consensus       212 l~~l~~l~~LL~~~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~~  256 (294)
                      +..+++|+. |+++.+....+|...    ...+++|+.|.|..|.
T Consensus       251 ~~~l~~L~~-L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          251 FDNLQSLVE-INLAHNNLTLLPHDL----FTPLHHLERIHLHHNP  290 (440)
T ss_dssp             STTCTTCCE-EECTTSCCCCCCTTT----TSSCTTCCEEECCSSC
T ss_pred             hcCCCCCCE-EECCCCCCCccChhH----hccccCCCEEEcCCCC
Confidence            345667777 577777666676652    4557889999998763

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.34  E-value=4.3e-11  Score=110.48  Aligned_cols=257  Identities=14%  Similarity=0.092  Sum_probs=127.0

Q ss_pred             CCCCCccEEEeeecccChHHHHHHHh--cCCCCCEEEEEcCCCCCee--cc-----CCCCCccEEEccccCC-cc--ccc
Q 036679            7 VTLSSLRELGLFKCAANDEAIRDIVA--GCPLIERLKIIDCRGLKSL--EF-----LNLGKLSKFMVRNEDR-LA--RVS   74 (294)
Q Consensus         7 ~~l~~Lk~L~L~~~~~~~~~l~~~~~--~~~~Le~L~L~~c~~l~~l--~~-----~~l~~L~~L~l~~c~~-l~--~~~   74 (294)
                      ..+++|+.|+++++.+++..+..+..  .+++|++|++++|.--..+  .+     .++++|+.++++++.. +.  .+.
T Consensus       217 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~  296 (520)
T 2z7x_B          217 QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIY  296 (520)
T ss_dssp             GGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHH
T ss_pred             ccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhh
Confidence            44556666666666655443333322  2457777777776411011  11     3455566666655432 10  000


Q ss_pred             --ccCCcccEEEeeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec-----cc-cc
Q 036679           75 --ICGPNVRLVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK-----IS-SP  146 (294)
Q Consensus        75 --~~~~~L~~L~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~-----i~-~~  146 (294)
                        ...++|+.|+++++..........+++|++|+++++.+++. ++..+.++++|+.|+++++. ++.+.     +. .+
T Consensus       297 ~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~  374 (520)
T 2z7x_B          297 EIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT-VFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMK  374 (520)
T ss_dssp             HHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT-TTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCT
T ss_pred             cccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChh-hhhhhccCCCCCEEEccCCc-cCccccchHHHhhCC
Confidence              01134666666665532211124556666666666665542 22334556666666666543 22211     11 15


Q ss_pred             ccceEEeecccCceeee----ccCCCccEEEEcCcee--eeecCc-cccceEEEEEEEeccChhHHHHHHHHHhcCcccc
Q 036679          147 YLKKLLVRFCNKLYEFK----LDTPNLSVFDYEGDMV--SFSSNA-LALSETSLCLDSINVDNQWLVKFIELLAKLNHCS  219 (294)
Q Consensus       147 ~L~~L~l~~c~~l~~~~----~~~p~L~~l~~~g~~~--~~~~~~-~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~  219 (294)
                      +|++|++++|.....++    ...++|++++++++..  ..+... ++|+.+++....+.       .++..+..+++|+
T Consensus       375 ~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-------~ip~~~~~l~~L~  447 (520)
T 2z7x_B          375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-------SIPKQVVKLEALQ  447 (520)
T ss_dssp             TCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-------CCCGGGGGCTTCC
T ss_pred             CCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-------ccchhhhcCCCCC
Confidence            66666666655332232    1235666666666544  111111 35555555221111       1112233677888


Q ss_pred             eeEEEeeeeeeecchhhhhccCCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCC
Q 036679          220 NVLNLECYAAAIIPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHA  277 (294)
Q Consensus       220 ~LL~~~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~l  277 (294)
                      . |+++.+....+|..    ....+++|++|.+..|.....-....++...++..+..
T Consensus       448 ~-L~L~~N~l~~l~~~----~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~  500 (520)
T 2z7x_B          448 E-LNVASNQLKSVPDG----IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK  500 (520)
T ss_dssp             E-EECCSSCCCCCCTT----TTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTT
T ss_pred             E-EECCCCcCCccCHH----HhccCCcccEEECcCCCCcccCCchHHHHHHHHhcccc
Confidence            8 57777777777765    24567899999998865433333333434445544443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.33  E-value=4.4e-12  Score=118.35  Aligned_cols=104  Identities=15%  Similarity=0.075  Sum_probs=65.4

Q ss_pred             CCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccC--Ccc--cccccCCc
Q 036679            4 TRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNED--RLA--RVSICGPN   79 (294)
Q Consensus         4 ~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~--~l~--~~~~~~~~   79 (294)
                      ..+..+++|++|+|++|.+++- .+..+.++++|++|+++++. +..+.-..+++|++|+++++.  .+.  ......++
T Consensus        70 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~  147 (562)
T 3a79_B           70 PDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNR-LQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTK  147 (562)
T ss_dssp             GGTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSC-CCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTT
T ss_pred             hhhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCc-CCccCccccccCCEEECCCCCccccCchHhhcccCc
Confidence            5677889999999999987542 12346778999999998874 555544467788888888775  211  11224567


Q ss_pred             ccEEEeeCCCCCccccccccccc--ceEEeccc
Q 036679           80 VRLVDISSLHAPCGINVALCKNL--KELKLFKL  110 (294)
Q Consensus        80 L~~L~l~~c~~~~~~~~~~~~~L--~~L~L~~~  110 (294)
                      |+.|+++++.... ..+..+++|  ++|+++++
T Consensus       148 L~~L~L~~n~l~~-~~~~~l~~L~L~~L~L~~n  179 (562)
T 3a79_B          148 LTFLGLSAAKFRQ-LDLLPVAHLHLSCILLDLV  179 (562)
T ss_dssp             CCEEEEECSBCCT-TTTGGGTTSCEEEEEEEES
T ss_pred             ccEEecCCCcccc-CchhhhhhceeeEEEeecc
Confidence            7777777765321 122333333  55555444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.33  E-value=1.4e-12  Score=124.37  Aligned_cols=270  Identities=17%  Similarity=0.141  Sum_probs=159.6

Q ss_pred             CCCCCCCCCccEEEeeecccChH----HHHH----HHhcCCCCCEEEEEcCCC--CCeeccCCCCCccEEEccccC-Ccc
Q 036679            3 PTRNVTLSSLRELGLFKCAANDE----AIRD----IVAGCPLIERLKIIDCRG--LKSLEFLNLGKLSKFMVRNED-RLA   71 (294)
Q Consensus         3 p~~~~~l~~Lk~L~L~~~~~~~~----~l~~----~~~~~~~Le~L~L~~c~~--l~~l~~~~l~~L~~L~l~~c~-~l~   71 (294)
                      |..+..+++|++|+++++.....    .++.    .+..+++|++|+++++.-  +..-.+.++++|++|++++|. ...
T Consensus       289 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~  368 (680)
T 1ziw_A          289 SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR  368 (680)
T ss_dssp             TTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCC
T ss_pred             hhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhh
Confidence            56677889999999987643211    1111    356788999999988752  111124567888999888775 222


Q ss_pred             ccc------ccCCcccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecc
Q 036679           72 RVS------ICGPNVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKI  143 (294)
Q Consensus        72 ~~~------~~~~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i  143 (294)
                      .+.      ...++|+.|++++|....  +..+..+++|+.|+++++.+++......+.++++|+.|+++++. +..+..
T Consensus       369 ~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~  447 (680)
T 1ziw_A          369 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTR  447 (680)
T ss_dssp             EECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCT
T ss_pred             hcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeCh
Confidence            211      123578888888886432  23456778888888888876542112346678888888888865 333321


Q ss_pred             c----ccccceEEeecccCc--eeee---ccCCCccEEEEcCceee-----eecCccccceEEEEEEEeccChhHHHHH-
Q 036679          144 S----SPYLKKLLVRFCNKL--YEFK---LDTPNLSVFDYEGDMVS-----FSSNALALSETSLCLDSINVDNQWLVKF-  208 (294)
Q Consensus       144 ~----~~~L~~L~l~~c~~l--~~~~---~~~p~L~~l~~~g~~~~-----~~~~~~~L~~~~i~~~~~~~~~~~~~~~-  208 (294)
                      .    .++|+.|++.++..-  ..++   ..+++|+.++++++.+.     .+.+.++|+.+++.-..+.  ..+...+ 
T Consensus       448 ~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~  525 (680)
T 1ziw_A          448 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA--RLWKHANP  525 (680)
T ss_dssp             TTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCG--GGGSTTST
T ss_pred             hhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcc--ccchhhcc
Confidence            1    267888888776531  1121   24577888888777541     1334566777766322110  0000000 


Q ss_pred             ---HHHHhcCcccceeEEEeeeeeeecchhhhhccCCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEeeC
Q 036679          209 ---IELLAKLNHCSNVLNLECYAAAIIPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCN  285 (294)
Q Consensus       209 ---~~~l~~l~~l~~LL~~~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~~~  285 (294)
                         ..+++.+++|+. |+++.+....+|.+.    ...+++|++|.|..|...   .   +....+..+|.|++|.+...
T Consensus       526 ~~~~~~~~~l~~L~~-L~L~~N~l~~i~~~~----~~~l~~L~~L~Ls~N~l~---~---l~~~~~~~l~~L~~L~L~~N  594 (680)
T 1ziw_A          526 GGPIYFLKGLSHLHI-LNLESNGFDEIPVEV----FKDLFELKIIDLGLNNLN---T---LPASVFNNQVSLKSLNLQKN  594 (680)
T ss_dssp             TSCCCTTTTCTTCCE-EECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCC---C---CCTTTTTTCTTCCEEECTTS
T ss_pred             CCcchhhcCCCCCCE-EECCCCCCCCCCHHH----cccccCcceeECCCCCCC---c---CCHhHhCCCCCCCEEECCCC
Confidence               012445666666 577766666676542    345678888888764332   1   22334567788888888765


Q ss_pred             C
Q 036679          286 D  286 (294)
Q Consensus       286 ~  286 (294)
                      .
T Consensus       595 ~  595 (680)
T 1ziw_A          595 L  595 (680)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.32  E-value=1.4e-11  Score=114.34  Aligned_cols=38  Identities=16%  Similarity=0.295  Sum_probs=24.6

Q ss_pred             CCCccEEEeeecccChHHHH---HHHhcCCCCCEEEEEcCC
Q 036679            9 LSSLRELGLFKCAANDEAIR---DIVAGCPLIERLKIIDCR   46 (294)
Q Consensus         9 l~~Lk~L~L~~~~~~~~~l~---~~~~~~~~Le~L~L~~c~   46 (294)
                      +++|++|+++++.+++..+.   .....+++|+.|++++|.
T Consensus       222 ~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~  262 (549)
T 2z81_A          222 SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT  262 (549)
T ss_dssp             CCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred             hhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence            55666666666666553333   334667888888888774

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.32  E-value=8e-12  Score=106.45  Aligned_cols=182  Identities=15%  Similarity=0.029  Sum_probs=128.4

Q ss_pred             CCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCCcccc----cccCCccc
Q 036679            9 LSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDRLARV----SICGPNVR   81 (294)
Q Consensus         9 l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~l~~~----~~~~~~L~   81 (294)
                      .++|++|+++++.+++- ....+..+++|++|+++++. +..+   .+.++++|++|+++++..+..+    ....++|+
T Consensus        31 ~~~l~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~  108 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH  108 (285)
T ss_dssp             CTTCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred             CCCceEEEeeCCcCCcc-CHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCC
Confidence            57899999999988642 22346789999999999874 4444   3567789999999988634333    22468999


Q ss_pred             EEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc----ccccceEEeec
Q 036679           82 LVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYLKKLLVRF  155 (294)
Q Consensus        82 ~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~~L~l~~  155 (294)
                      +|++++|....  +..+..+++|++|+++++.+++. ....+..+++|+.|+++++. ++.+...    .++|++|++++
T Consensus       109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~  186 (285)
T 1ozn_A          109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL-PDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQ  186 (285)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred             EEECCCCcCCEECHhHhhCCcCCCEEECCCCccccc-CHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCC
Confidence            99999987432  23467789999999999887652 22346778999999999864 5555432    27899999998


Q ss_pred             ccCceeee---ccCCCccEEEEcCceee-----eecCccccceEEEE
Q 036679          156 CNKLYEFK---LDTPNLSVFDYEGDMVS-----FSSNALALSETSLC  194 (294)
Q Consensus       156 c~~l~~~~---~~~p~L~~l~~~g~~~~-----~~~~~~~L~~~~i~  194 (294)
                      +......+   ...++|+.++++++.+.     .+...++|+.+.+.
T Consensus       187 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  233 (285)
T 1ozn_A          187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN  233 (285)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred             CcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEecc
Confidence            87432212   24678999999887651     23455677777763

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.32  E-value=7.5e-12  Score=106.63  Aligned_cols=172  Identities=16%  Similarity=0.100  Sum_probs=127.3

Q ss_pred             CCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccC--Cccc-ccccC
Q 036679            4 TRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNED--RLAR-VSICG   77 (294)
Q Consensus         4 ~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~--~l~~-~~~~~   77 (294)
                      ..+..+++|++|+|++|.+++. .+..+..+++|++|+++++..+..+   .+.++++|++|+++++.  .+.. .....
T Consensus        50 ~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  128 (285)
T 1ozn_A           50 ASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL  128 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred             HHcccCCCCCEEECCCCcccee-CHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCC
Confidence            4567899999999999988542 1334678999999999999755544   35578999999999986  2211 12246


Q ss_pred             CcccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc----ccccceE
Q 036679           78 PNVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYLKKL  151 (294)
Q Consensus        78 ~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~~L  151 (294)
                      ++|++|++++|....  +..+..+++|++|+++++.+++. ....+..+++|+.|+++++. ++.+...    .++|++|
T Consensus       129 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L  206 (285)
T 1ozn_A          129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-PERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTL  206 (285)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEE
T ss_pred             cCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc-CHHHhcCccccCEEECCCCc-ccccCHhHccCcccccEe
Confidence            899999999997432  23367889999999999987752 22346779999999999965 4444221    2799999


Q ss_pred             EeecccCceeee----ccCCCccEEEEcCcee
Q 036679          152 LVRFCNKLYEFK----LDTPNLSVFDYEGDMV  179 (294)
Q Consensus       152 ~l~~c~~l~~~~----~~~p~L~~l~~~g~~~  179 (294)
                      +++++.. +.++    ...++|+.+++.+++.
T Consensus       207 ~l~~n~l-~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          207 YLFANNL-SALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             ECCSSCC-SCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             eCCCCcC-CcCCHHHcccCcccCEEeccCCCc
Confidence            9999863 3343    3478999999998865

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.31  E-value=9.6e-12  Score=103.23  Aligned_cols=168  Identities=18%  Similarity=0.147  Sum_probs=120.2

Q ss_pred             CCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccCCccccc----ccCCccc
Q 036679            9 LSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARVS----ICGPNVR   81 (294)
Q Consensus         9 l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~~l~~~~----~~~~~L~   81 (294)
                      .++|++|+++++.++.- ....+.++++|++|+++++..+..+.   +.++++|++|++++|..+..+.    ..+++|+
T Consensus        30 ~~~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~  108 (239)
T 2xwt_C           30 PPSTQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK  108 (239)
T ss_dssp             CTTCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred             CCcccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence            34899999999988541 12246789999999999987566553   4567899999999844444332    2468999


Q ss_pred             EEEeeCCCCCcccccccccccc---eEEeccc-ccChHHHHHHhcCCCCCc-EEeecccccceeeccc---ccccceEEe
Q 036679           82 LVDISSLHAPCGINVALCKNLK---ELKLFKL-SITNEWLCNQFSELPFLE-YLEIFRCMKIRSIKIS---SPYLKKLLV  153 (294)
Q Consensus        82 ~L~l~~c~~~~~~~~~~~~~L~---~L~L~~~-~i~~~~l~~l~~~~~~L~-~L~l~~c~~l~~l~i~---~~~L~~L~l  153 (294)
                      .|++++|.......+..+++|+   +|+++++ .+++- ....+.++++|+ .|+++++. ++.++..   .++|++|++
T Consensus       109 ~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i-~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~~L~~L~L  186 (239)
T 2xwt_C          109 FLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSI-PVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYL  186 (239)
T ss_dssp             EEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEE-CTTTTTTTBSSEEEEECCSCC-CCEECTTTTTTCEEEEEEC
T ss_pred             EEeCCCCCCccccccccccccccccEEECCCCcchhhc-CcccccchhcceeEEEcCCCC-CcccCHhhcCCCCCCEEEc
Confidence            9999998743222366777787   9999998 76542 123466789999 99998754 5555432   268999999


Q ss_pred             ecccCceeeec----cC-CCccEEEEcCcee
Q 036679          154 RFCNKLYEFKL----DT-PNLSVFDYEGDMV  179 (294)
Q Consensus       154 ~~c~~l~~~~~----~~-p~L~~l~~~g~~~  179 (294)
                      +++..++.++.    .. ++|+.++++++.+
T Consensus       187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l  217 (239)
T 2xwt_C          187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV  217 (239)
T ss_dssp             TTCTTCCEECTTTTTTCSBCCSEEECTTCCC
T ss_pred             CCCCCcccCCHHHhhccccCCcEEECCCCcc
Confidence            99876666642    34 7889999888765

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.31  E-value=3e-12  Score=117.49  Aligned_cols=205  Identities=12%  Similarity=0.061  Sum_probs=143.6

Q ss_pred             CCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCCcccccccCCcccE
Q 036679            3 PTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVSICGPNVRL   82 (294)
Q Consensus         3 p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~   82 (294)
                      |..+..+++|++|+|++|.+++.. +  +..+++|++|++++|. +..+.  ..++|++|++++|.--.......++|+.
T Consensus        51 ~~~~~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~-l~~l~--~~~~L~~L~L~~N~l~~~~~~~l~~L~~  124 (487)
T 3oja_A           51 AADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNY-VQELL--VGPSIETLHAANNNISRVSCSRGQGKKN  124 (487)
T ss_dssp             GGGGTTCTTCCEEECTTSCCEEEE-E--CTTCTTCCEEECCSSE-EEEEE--ECTTCCEEECCSSCCCCEEECCCSSCEE
T ss_pred             HHHHhCCCCCCEEEeeCCCCCCCc-c--cccCCCCCEEEecCCc-CCCCC--CCCCcCEEECcCCcCCCCCccccCCCCE
Confidence            356788999999999999886422 1  7889999999999983 44443  2388999999988622111224689999


Q ss_pred             EEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc--ccccceEEeecccC
Q 036679           83 VDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS--SPYLKKLLVRFCNK  158 (294)
Q Consensus        83 L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~--~~~L~~L~l~~c~~  158 (294)
                      |++++|.+..  +..++.+++|++|+++++.+++.....+...+++|+.|+++++. ++.+...  .++|++|+++++. 
T Consensus       125 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~Ls~N~-  202 (487)
T 3oja_A          125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNK-  202 (487)
T ss_dssp             EECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSSC-
T ss_pred             EECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccccccCCCCCEEECCCCC-
Confidence            9999998432  34567889999999999998764334444578999999999965 4444322  3799999999986 


Q ss_pred             ceeee---ccCCCccEEEEcCceeee----ecCccccceEEEEEEEeccChhH-HHHHHHHHhcCccccee
Q 036679          159 LYEFK---LDTPNLSVFDYEGDMVSF----SSNALALSETSLCLDSINVDNQW-LVKFIELLAKLNHCSNV  221 (294)
Q Consensus       159 l~~~~---~~~p~L~~l~~~g~~~~~----~~~~~~L~~~~i~~~~~~~~~~~-~~~~~~~l~~l~~l~~L  221 (294)
                      ++.++   ...++|+.|+++++.+..    +...++|+.+.+..      +.+ ...++.++..++.++.+
T Consensus       203 l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~------N~l~c~~~~~~~~~l~~L~~l  267 (487)
T 3oja_A          203 LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG------NGFHCGTLRDFFSKNQRVQTV  267 (487)
T ss_dssp             CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTT------CCBCHHHHHHHHTTCHHHHHH
T ss_pred             CCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCC------CCCcCcchHHHHHhCCCCcEE
Confidence            44443   256899999999886622    23345677766621      112 13445666677777665

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.31  E-value=4.7e-12  Score=108.99  Aligned_cols=190  Identities=19%  Similarity=0.223  Sum_probs=135.0

Q ss_pred             CCCC-CCCCCCccEEEeeecccChH-HHHHHHhcCCCCCEEEEEcCCCCCee--ccCCCCCccEEEccccC--Cccc--c
Q 036679            2 SPTR-NVTLSSLRELGLFKCAANDE-AIRDIVAGCPLIERLKIIDCRGLKSL--EFLNLGKLSKFMVRNED--RLAR--V   73 (294)
Q Consensus         2 ~p~~-~~~l~~Lk~L~L~~~~~~~~-~l~~~~~~~~~Le~L~L~~c~~l~~l--~~~~l~~L~~L~l~~c~--~l~~--~   73 (294)
                      +|.. +.++++|++|+|++|.++.. .....+..+++|++|+++++. +..+  .+.++++|++|+++++.  .+..  .
T Consensus        43 i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~  121 (306)
T 2z66_A           43 LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV  121 (306)
T ss_dssp             CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTT
T ss_pred             cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCEEECCCCcccccccchh
Confidence            4544 47899999999999988642 112234578999999999985 3222  24567999999999875  2222  2


Q ss_pred             cccCCcccEEEeeCCCCC--cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecc---c-ccc
Q 036679           74 SICGPNVRLVDISSLHAP--CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKI---S-SPY  147 (294)
Q Consensus        74 ~~~~~~L~~L~l~~c~~~--~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i---~-~~~  147 (294)
                      ....++|+.|++++|...  .+..+..+++|++|+++++.+++..++..+..+++|+.|+++++. ++.+..   . .++
T Consensus       122 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~  200 (306)
T 2z66_A          122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSS  200 (306)
T ss_dssp             TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTT
T ss_pred             hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC-cCCcCHHHhcCCCC
Confidence            235689999999998743  223467789999999999988764455567789999999999964 454422   1 278


Q ss_pred             cceEEeecccCceeee----ccCCCccEEEEcCceee-----eecCc-cccceEEEE
Q 036679          148 LKKLLVRFCNKLYEFK----LDTPNLSVFDYEGDMVS-----FSSNA-LALSETSLC  194 (294)
Q Consensus       148 L~~L~l~~c~~l~~~~----~~~p~L~~l~~~g~~~~-----~~~~~-~~L~~~~i~  194 (294)
                      |++|+++++... .+.    ...++|+.++++++.+.     .+... ++|+.+++.
T Consensus       201 L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~  256 (306)
T 2z66_A          201 LQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT  256 (306)
T ss_dssp             CCEEECTTSCCS-BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECT
T ss_pred             CCEEECCCCccC-ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEcc
Confidence            999999998743 322    24689999999988651     12233 367777773

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.30  E-value=3.1e-11  Score=104.13  Aligned_cols=166  Identities=16%  Similarity=0.123  Sum_probs=116.5

Q ss_pred             CCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccC--CcccccccCCccc
Q 036679            5 RNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNED--RLARVSICGPNVR   81 (294)
Q Consensus         5 ~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~   81 (294)
                      .+..+++|++|+|++|.+++-.  . +..+++|++|+++++. +..+ .+..+++|++|++++|.  .+.. ....++|+
T Consensus        58 ~~~~l~~L~~L~L~~n~i~~~~--~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~  132 (308)
T 1h6u_A           58 GVQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQ  132 (308)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCC
T ss_pred             hhhccCCCCEEEccCCcCCCCh--h-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEECCCCCCCCchh-hcCCCCCC
Confidence            4566889999999998876421  2 7788899999998875 3333 35567889999998875  2222 22467899


Q ss_pred             EEEeeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec-ccc-cccceEEeecccCc
Q 036679           82 LVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK-ISS-PYLKKLLVRFCNKL  159 (294)
Q Consensus        82 ~L~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~-i~~-~~L~~L~l~~c~~l  159 (294)
                      .|++++|.......+..+++|+.|+++++.+++-  .. +..+++|+.|+++++. ++.+. +.. ++|++|++++|...
T Consensus       133 ~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N~l~  208 (308)
T 1h6u_A          133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL--TP-LANLSKLTTLKADDNK-ISDISPLASLPNLIEVHLKNNQIS  208 (308)
T ss_dssp             EEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECTTSCCC
T ss_pred             EEECCCCccCcCccccCCCCccEEEccCCcCCCC--hh-hcCCCCCCEEECCCCc-cCcChhhcCCCCCCEEEccCCccC
Confidence            9999888744333367788899999998887752  22 6778899999998864 44433 222 68899999888633


Q ss_pred             eeee-ccCCCccEEEEcCcee
Q 036679          160 YEFK-LDTPNLSVFDYEGDMV  179 (294)
Q Consensus       160 ~~~~-~~~p~L~~l~~~g~~~  179 (294)
                      ...+ ...++|+.+++.++.+
T Consensus       209 ~~~~l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          209 DVSPLANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             BCGGGTTCTTCCEEEEEEEEE
T ss_pred             ccccccCCCCCCEEEccCCee
Confidence            2222 3567888888888765

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.30  E-value=1.5e-11  Score=111.77  Aligned_cols=158  Identities=15%  Similarity=0.095  Sum_probs=76.3

Q ss_pred             CCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---------------------ccCCCCCccEEEccccC
Q 036679           10 SSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---------------------EFLNLGKLSKFMVRNED   68 (294)
Q Consensus        10 ~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---------------------~~~~l~~L~~L~l~~c~   68 (294)
                      ++|++|++++|.+++  ++. ++.+++|++|+++++. +..+                     .+.++++|++|++++|.
T Consensus       131 ~~L~~L~L~~n~l~~--lp~-~~~l~~L~~L~l~~N~-l~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~  206 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK--LPE-LQNSSFLKIIDVDNNS-LKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNS  206 (454)
T ss_dssp             TTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC
T ss_pred             CCCCEEECcCCCCCC--Ccc-cCCCCCCCEEECCCCc-CcccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCc
Confidence            466666666665542  222 4556666666666553 2111                     12334555555555543


Q ss_pred             CcccccccCCcccEEEeeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccccccc
Q 036679           69 RLARVSICGPNVRLVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISSPYL  148 (294)
Q Consensus        69 ~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~~~L  148 (294)
                       +..+....++|+.|++++|....-..+..+++|++|+++++.+++  ++   ...++|+.|+++++. ++.++...++|
T Consensus       207 -l~~l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~--l~---~~~~~L~~L~l~~N~-l~~l~~~~~~L  279 (454)
T 1jl5_A          207 -LKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT--LP---DLPPSLEALNVRDNY-LTDLPELPQSL  279 (454)
T ss_dssp             -CSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS--CC---SCCTTCCEEECCSSC-CSCCCCCCTTC
T ss_pred             -CCcCCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCc--cc---ccccccCEEECCCCc-ccccCcccCcC
Confidence             111212234566666666653211134566666777776665543  11   123566666666543 33332222456


Q ss_pred             ceEEeecccCceeeeccCCCccEEEEcCcee
Q 036679          149 KKLLVRFCNKLYEFKLDTPNLSVFDYEGDMV  179 (294)
Q Consensus       149 ~~L~l~~c~~l~~~~~~~p~L~~l~~~g~~~  179 (294)
                      ++|++++|. ++.++...++|+.++++++..
T Consensus       280 ~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l  309 (454)
T 1jl5_A          280 TFLDVSENI-FSGLSELPPNLYYLNASSNEI  309 (454)
T ss_dssp             CEEECCSSC-CSEESCCCTTCCEEECCSSCC
T ss_pred             CEEECcCCc-cCcccCcCCcCCEEECcCCcC
Confidence            666665554 222222224555555554433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.30  E-value=6.6e-12  Score=114.06  Aligned_cols=184  Identities=21%  Similarity=0.151  Sum_probs=126.2

Q ss_pred             CCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccCCcccc----cc
Q 036679            3 PTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARV----SI   75 (294)
Q Consensus         3 p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~~l~~~----~~   75 (294)
                      |..+.++++|++|+|++|.+++- ....+.++++|++|+++++. +..+.   +.++++|++|+++++. +..+    ..
T Consensus        92 ~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~  168 (452)
T 3zyi_A           92 ADTFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFN  168 (452)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTT
T ss_pred             HHHcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCC-cceeCHhHHh
Confidence            56678899999999999988642 22346789999999999985 43332   4567899999998875 2222    22


Q ss_pred             cCCcccEEEeeCCCC-C--cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc----cccc
Q 036679           76 CGPNVRLVDISSLHA-P--CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYL  148 (294)
Q Consensus        76 ~~~~L~~L~l~~c~~-~--~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L  148 (294)
                      ..++|+.|++++|.. .  ....+..+++|++|+++++.+++-  + .+..+++|+.|+++++. ++.+...    .++|
T Consensus       169 ~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L  244 (452)
T 3zyi_A          169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--P-NLTPLVGLEELEMSGNH-FPEIRPGSFHGLSSL  244 (452)
T ss_dssp             TCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--C-CCTTCTTCCEEECTTSC-CSEECGGGGTTCTTC
T ss_pred             cCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--c-cccccccccEEECcCCc-CcccCcccccCccCC
Confidence            468899999988652 1  112466788899999998887652  2 25678889999998864 4444221    2688


Q ss_pred             ceEEeecccCceeee----ccCCCccEEEEcCceee-----eecCccccceEEEE
Q 036679          149 KKLLVRFCNKLYEFK----LDTPNLSVFDYEGDMVS-----FSSNALALSETSLC  194 (294)
Q Consensus       149 ~~L~l~~c~~l~~~~----~~~p~L~~l~~~g~~~~-----~~~~~~~L~~~~i~  194 (294)
                      ++|+++++.. +.+.    .+.++|+.|+++++.+.     .+...++|+.+++.
T Consensus       245 ~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  298 (452)
T 3zyi_A          245 KKLWVMNSQV-SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH  298 (452)
T ss_dssp             CEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECC
T ss_pred             CEEEeCCCcC-ceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEcc
Confidence            8888888763 3332    24578888888887651     23345667777763

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.28  E-value=2.7e-11  Score=110.22  Aligned_cols=77  Identities=19%  Similarity=0.188  Sum_probs=44.5

Q ss_pred             CCCCEEEEEcCCCCCee-ccCCCCCccEEEccccCCcccccccCCcccEEEeeCCCCCcccccccccccceEEecccccC
Q 036679           35 PLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNEDRLARVSICGPNVRLVDISSLHAPCGINVALCKNLKELKLFKLSIT  113 (294)
Q Consensus        35 ~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~  113 (294)
                      ++|++|++++|. +..+ .+.++++|++|+++++. +..+....++|++|++++|.......+..+++|++|+++++.++
T Consensus       131 ~~L~~L~L~~n~-l~~lp~~~~l~~L~~L~l~~N~-l~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~  208 (454)
T 1jl5_A          131 PLLEYLGVSNNQ-LEKLPELQNSSFLKIIDVDNNS-LKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK  208 (454)
T ss_dssp             TTCCEEECCSSC-CSSCCCCTTCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred             CCCCEEECcCCC-CCCCcccCCCCCCCEEECCCCc-CcccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCC
Confidence            456666666653 2222 24556778888887764 33332234577888887776322223556666666666666554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.28  E-value=6.1e-13  Score=115.31  Aligned_cols=230  Identities=9%  Similarity=0.028  Sum_probs=152.9

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCC--cccccccCCcccEEEeeCCCCCcccccccc
Q 036679           25 EAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDR--LARVSICGPNVRLVDISSLHAPCGINVALC   99 (294)
Q Consensus        25 ~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~--l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~   99 (294)
                      +.+..+...+++|++|+++++. +..+   .+.++++|++|+++++.-  ..+ ....++|++|++++|.+.   .+...
T Consensus        24 ~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~---~l~~~   98 (317)
T 3o53_A           24 QALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ---ELLVG   98 (317)
T ss_dssp             HHHHHHHTTGGGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEE---EEEEC
T ss_pred             hhHHHHhccCCCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccc---cccCC
Confidence            4556677888999999999985 3332   356789999999999862  222 235689999999998642   22345


Q ss_pred             cccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec---cc-ccccceEEeecccCceeee-----ccCCCcc
Q 036679          100 KNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK---IS-SPYLKKLLVRFCNKLYEFK-----LDTPNLS  170 (294)
Q Consensus       100 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~---i~-~~~L~~L~l~~c~~l~~~~-----~~~p~L~  170 (294)
                      ++|++|+++++.+++..    ...+++|+.|+++++. ++.+.   .. .++|++|+++++... .+.     ...++|+
T Consensus        99 ~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~l~~L~  172 (317)
T 3o53_A           99 PSIETLHAANNNISRVS----CSRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTLE  172 (317)
T ss_dssp             TTCCEEECCSSCCSEEE----ECCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCC-EEEGGGGGGGTTTCC
T ss_pred             CCcCEEECCCCccCCcC----ccccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCC-cccHHHHhhccCcCC
Confidence            88999999999877532    2357899999999864 44332   12 268999999988643 332     2468999


Q ss_pred             EEEEcCceee---eecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEEeeeeeeecchhhhhccCCCCCCC
Q 036679          171 VFDYEGDMVS---FSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAIIPRELREILSSPLTYE  247 (294)
Q Consensus       171 ~l~~~g~~~~---~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~~~p~~~~~~~~~~f~~L  247 (294)
                      .++++++.+.   .....++|+.+++....+...       ...+..+++|+. |+++.+....+|+.     ...+++|
T Consensus       173 ~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l-------~~~~~~l~~L~~-L~L~~N~l~~l~~~-----~~~l~~L  239 (317)
T 3o53_A          173 HLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM-------GPEFQSAAGVTW-ISLRNNKLVLIEKA-----LRFSQNL  239 (317)
T ss_dssp             EEECTTSCCCEEECCCCCTTCCEEECCSSCCCEE-------CGGGGGGTTCSE-EECTTSCCCEECTT-----CCCCTTC
T ss_pred             EEECCCCcCcccccccccccCCEEECCCCcCCcc-------hhhhcccCcccE-EECcCCcccchhhH-----hhcCCCC
Confidence            9999988662   122356788777732221110       111456677777 58887777778876     5667899


Q ss_pred             ceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEe
Q 036679          248 NHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIK  283 (294)
Q Consensus       248 k~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~  283 (294)
                      ++|.+..|....     +.+...+...|.|+++.+.
T Consensus       240 ~~L~l~~N~~~~-----~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          240 EHFDLRGNGFHC-----GTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             CEEECTTCCCBH-----HHHHHHHHTCHHHHHHHHH
T ss_pred             CEEEccCCCccC-----cCHHHHHhccccceEEECC
Confidence            999998753310     1233345566666666654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.28  E-value=6.2e-12  Score=108.81  Aligned_cols=189  Identities=12%  Similarity=0.087  Sum_probs=131.9

Q ss_pred             CCCCCCCCCCccEEEeee-cccChHHHHHHHhcCCCCCEEEEEcCCCCCee--ccCCCCCccEEEccccCC---cccccc
Q 036679            2 SPTRNVTLSSLRELGLFK-CAANDEAIRDIVAGCPLIERLKIIDCRGLKSL--EFLNLGKLSKFMVRNEDR---LARVSI   75 (294)
Q Consensus         2 ~p~~~~~l~~Lk~L~L~~-~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l--~~~~l~~L~~L~l~~c~~---l~~~~~   75 (294)
                      +|..+.++++|++|+|++ +.+.+. ++..+..+++|++|+++++.--..+  .+.++++|++|+++++.-   +.....
T Consensus        68 ~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  146 (313)
T 1ogq_A           68 IPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS  146 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred             cChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence            577788999999999995 766432 3334788999999999998532122  256789999999998861   212223


Q ss_pred             cCCcccEEEeeCCCCC--ccccccccc-ccceEEecccccChHHHHHHhcCCCCCcEEeecccccceee-cc--c-cccc
Q 036679           76 CGPNVRLVDISSLHAP--CGINVALCK-NLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSI-KI--S-SPYL  148 (294)
Q Consensus        76 ~~~~L~~L~l~~c~~~--~~~~~~~~~-~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l-~i--~-~~~L  148 (294)
                      ..++|++|++++|.+.  .+..+..++ +|++|+++++.+++. ++..+..++ |+.|+++++. ++.. +.  . .++|
T Consensus       147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~-~~~~~~~l~-L~~L~Ls~N~-l~~~~~~~~~~l~~L  223 (313)
T 1ogq_A          147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK-IPPTFANLN-LAFVDLSRNM-LEGDASVLFGSDKNT  223 (313)
T ss_dssp             GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE-CCGGGGGCC-CSEEECCSSE-EEECCGGGCCTTSCC
T ss_pred             cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc-CChHHhCCc-ccEEECcCCc-ccCcCCHHHhcCCCC
Confidence            5789999999999743  334566676 899999999987643 344455565 9999999865 3332 21  1 2789


Q ss_pred             ceEEeecccCceeee--ccCCCccEEEEcCceee-----eecCccccceEEEE
Q 036679          149 KKLLVRFCNKLYEFK--LDTPNLSVFDYEGDMVS-----FSSNALALSETSLC  194 (294)
Q Consensus       149 ~~L~l~~c~~l~~~~--~~~p~L~~l~~~g~~~~-----~~~~~~~L~~~~i~  194 (294)
                      ++|+++++.....++  ...++|++|+++++.+.     .+...++|+.+++.
T Consensus       224 ~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  276 (313)
T 1ogq_A          224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS  276 (313)
T ss_dssp             SEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred             CEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECc
Confidence            999999886432222  24578999999988652     23455678877773

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.27  E-value=1.9e-11  Score=110.61  Aligned_cols=183  Identities=19%  Similarity=0.208  Sum_probs=118.7

Q ss_pred             CCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCCcccc----ccc
Q 036679            4 TRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDRLARV----SIC   76 (294)
Q Consensus         4 ~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~l~~~----~~~   76 (294)
                      ..+.++++|++|+|++|.++.- ....+.++++|++|+++++. +..+   .+.++++|++|+++++. +..+    ...
T Consensus        82 ~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~  158 (440)
T 3zyj_A           82 NSFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNR  158 (440)
T ss_dssp             TTTSSCSSCCEEECCSSCCCEE-CGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTT
T ss_pred             HHhhCCCCCCEEECCCCcCCcc-ChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhh
Confidence            4456677777777777766431 11235667777777777763 3322   24456778888887764 2221    124


Q ss_pred             CCcccEEEeeCCCC-C--cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc----ccccc
Q 036679           77 GPNVRLVDISSLHA-P--CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYLK  149 (294)
Q Consensus        77 ~~~L~~L~l~~c~~-~--~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~  149 (294)
                      .++|+.|++++|.. .  ....+.++++|++|+++++.+++  ++. +..+++|+.|+++++. ++.+...    .++|+
T Consensus       159 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~  234 (440)
T 3zyj_A          159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IPN-LTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQ  234 (440)
T ss_dssp             CTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--CCC-CTTCSSCCEEECTTSC-CCEECTTTTTTCTTCC
T ss_pred             CcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--ccc-cCCCcccCEEECCCCc-cCccChhhhccCccCC
Confidence            57888888887652 1  11246778899999999998764  232 5678899999999864 5554322    26899


Q ss_pred             eEEeecccCceeee----ccCCCccEEEEcCceee-----eecCccccceEEEE
Q 036679          150 KLLVRFCNKLYEFK----LDTPNLSVFDYEGDMVS-----FSSNALALSETSLC  194 (294)
Q Consensus       150 ~L~l~~c~~l~~~~----~~~p~L~~l~~~g~~~~-----~~~~~~~L~~~~i~  194 (294)
                      +|++.++. ++.+.    .+.++|+.|+++++.+.     .+...++|+.+++.
T Consensus       235 ~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  287 (440)
T 3zyj_A          235 KLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLH  287 (440)
T ss_dssp             EEECTTCC-CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECC
T ss_pred             EEECCCCc-eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcC
Confidence            99998876 33443    24688999999888651     12345677777773

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.26  E-value=4.1e-11  Score=102.54  Aligned_cols=162  Identities=15%  Similarity=0.159  Sum_probs=116.4

Q ss_pred             CCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccC--CcccccccCCcccEEE
Q 036679            8 TLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNED--RLARVSICGPNVRLVD   84 (294)
Q Consensus         8 ~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~L~   84 (294)
                      .+++|++|++++|.+.+-  +. +..+++|++|++++|. +..+ .+.++++|++|+++++.  .+.. ...+++|+.|+
T Consensus        44 ~l~~L~~L~l~~~~i~~~--~~-~~~l~~L~~L~L~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~  118 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSV--QG-IQYLPNVTKLFLNGNK-LTDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS  118 (291)
T ss_dssp             HHHTCCEEECTTSCCCCC--TT-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred             hcCcccEEEccCCCcccC--hh-HhcCCCCCEEEccCCc-cCCCcccccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence            467899999999887542  22 6778999999999885 2222 26678899999998875  2222 22468899999


Q ss_pred             eeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec-ccc-cccceEEeecccCceee
Q 036679           85 ISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK-ISS-PYLKKLLVRFCNKLYEF  162 (294)
Q Consensus        85 l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~-i~~-~~L~~L~l~~c~~l~~~  162 (294)
                      +++|.......+..+++|+.|+++++.+++-   ..+..+++|+.|+++++. ++.+. +.. ++|++|+++++. ++.+
T Consensus       119 L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~L~~N~-i~~l  193 (291)
T 1h6t_A          119 LEHNGISDINGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSKNH-ISDL  193 (291)
T ss_dssp             CTTSCCCCCGGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCBC
T ss_pred             CCCCcCCCChhhcCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCc-cccchhhcCCCccCEEECCCCc-CCCC
Confidence            9988754334567788999999999887763   346778999999998864 44432 222 689999998885 3333


Q ss_pred             e--ccCCCccEEEEcCcee
Q 036679          163 K--LDTPNLSVFDYEGDMV  179 (294)
Q Consensus       163 ~--~~~p~L~~l~~~g~~~  179 (294)
                      +  ...++|+.+++.++.+
T Consensus       194 ~~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          194 RALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             GGGTTCTTCSEEEEEEEEE
T ss_pred             hhhccCCCCCEEECcCCcc
Confidence            3  3567888898888765

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.25  E-value=3.4e-12  Score=111.16  Aligned_cols=150  Identities=21%  Similarity=0.278  Sum_probs=113.5

Q ss_pred             CCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCe--ec--cCCCCCccEEEccccCCccc-----ccc
Q 036679            5 RNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKS--LE--FLNLGKLSKFMVRNEDRLAR-----VSI   75 (294)
Q Consensus         5 ~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~--l~--~~~l~~L~~L~l~~c~~l~~-----~~~   75 (294)
                      ....+++|++|+|++|.+++..+. .++.+++|++|++++|..+..  +.  +.++++|++|++++|..+..     ...
T Consensus       113 ~~~~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  191 (336)
T 2ast_B          113 ILSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA  191 (336)
T ss_dssp             HHTTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred             HHhhCCCCCEEeCcCcccCHHHHH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH
Confidence            346789999999999998766555 456799999999999976552  21  34679999999999954432     223


Q ss_pred             cCC-cccEEEeeCCC--CC---cccccccccccceEEecccc-cChHHHHHHhcCCCCCcEEeecccccceeec---cc-
Q 036679           76 CGP-NVRLVDISSLH--AP---CGINVALCKNLKELKLFKLS-ITNEWLCNQFSELPFLEYLEIFRCMKIRSIK---IS-  144 (294)
Q Consensus        76 ~~~-~L~~L~l~~c~--~~---~~~~~~~~~~L~~L~L~~~~-i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~---i~-  144 (294)
                      .++ +|++|++++|.  ..   .+..+..+++|++|+++++. +++..+. .+..+++|+.|++++|..+....   +. 
T Consensus       192 ~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~  270 (336)
T 2ast_B          192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETLLELGE  270 (336)
T ss_dssp             HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGGGGGGG
T ss_pred             hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHHHHHHHhc
Confidence            578 99999999994  22   12345678999999999998 7765444 46788999999999997554332   22 


Q ss_pred             ccccceEEeecc
Q 036679          145 SPYLKKLLVRFC  156 (294)
Q Consensus       145 ~~~L~~L~l~~c  156 (294)
                      .++|++|++++|
T Consensus       271 ~~~L~~L~l~~~  282 (336)
T 2ast_B          271 IPTLKTLQVFGI  282 (336)
T ss_dssp             CTTCCEEECTTS
T ss_pred             CCCCCEEeccCc
Confidence            379999999999

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.24  E-value=2.6e-12  Score=112.01  Aligned_cols=254  Identities=16%  Similarity=0.093  Sum_probs=164.7

Q ss_pred             CCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCCcccc----cccCCcccE
Q 036679           10 SSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDRLARV----SICGPNVRL   82 (294)
Q Consensus        10 ~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~l~~~----~~~~~~L~~   82 (294)
                      .+++.++++++.+..  ++.  .-.++++.|+++++. +..+   .+.++++|++|+++++. +..+    ...+++|++
T Consensus        33 c~l~~l~~~~~~l~~--ip~--~~~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  106 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKA--VPK--EISPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQK  106 (332)
T ss_dssp             EETTEEECCSSCCSS--CCS--CCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCE
T ss_pred             ccCCEEECCCCCccc--cCC--CCCCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCE
Confidence            379999999987642  221  124789999999985 4444   35678999999999885 2222    224689999


Q ss_pred             EEeeCCCCC-cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec-----ccccccceEEeecc
Q 036679           83 VDISSLHAP-CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK-----ISSPYLKKLLVRFC  156 (294)
Q Consensus        83 L~l~~c~~~-~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~-----i~~~~L~~L~l~~c  156 (294)
                      |+++++... .+..  ..++|++|+++++.+++. ....+.++++|+.|+++++. ++...     ....+|++|+++++
T Consensus       107 L~L~~n~l~~l~~~--~~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~L~~L~l~~n  182 (332)
T 2ft3_A          107 LYISKNHLVEIPPN--LPSSLVELRIHDNRIRKV-PKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGLKLNYLRISEA  182 (332)
T ss_dssp             EECCSSCCCSCCSS--CCTTCCEEECCSSCCCCC-CSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSCCCSCCBCCSS
T ss_pred             EECCCCcCCccCcc--ccccCCEEECCCCccCcc-CHhHhCCCccCCEEECCCCc-cccCCCCcccccCCccCEEECcCC
Confidence            999998743 1222  238999999999987652 23347789999999999864 32211     11138999999888


Q ss_pred             cCceeeecc-CCCccEEEEcCcee-----eeecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEEeeeeee
Q 036679          157 NKLYEFKLD-TPNLSVFDYEGDMV-----SFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAA  230 (294)
Q Consensus       157 ~~l~~~~~~-~p~L~~l~~~g~~~-----~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~  230 (294)
                      . ++.++.. .++|++++++++.+     ..+...++|+.+.+....+....      ...+..+++|+. |+++.+...
T Consensus       183 ~-l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~-L~L~~N~l~  254 (332)
T 2ft3_A          183 K-LTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE------NGSLSFLPTLRE-LHLDNNKLS  254 (332)
T ss_dssp             B-CSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC------TTGGGGCTTCCE-EECCSSCCC
T ss_pred             C-CCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC------hhHhhCCCCCCE-EECCCCcCe
Confidence            6 3334422 36899999988765     12345567777776322211111      123566788888 587777777


Q ss_pred             ecchhhhhccCCCCCCCceEEEEEccccchhhHHHHHHH--HhhcCCCCCeeEEeeCCCC
Q 036679          231 IIPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDS--LLWISPHAETLSIKCNDCD  288 (294)
Q Consensus       231 ~~p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~--lL~~~P~le~l~i~~~~~~  288 (294)
                      .+|.+     ...+++|++|.+..|.......  ..+..  +....+.++++.+.+.+..
T Consensus       255 ~lp~~-----l~~l~~L~~L~l~~N~l~~~~~--~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          255 RVPAG-----LPDLKLLQVVYLHTNNITKVGV--NDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             BCCTT-----GGGCTTCCEEECCSSCCCBCCT--TSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             ecChh-----hhcCccCCEEECCCCCCCccCh--hHccccccccccccccceEeecCccc
Confidence            88876     3457899999998754422110  11110  1122578899999887654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.23  E-value=3.2e-11  Score=102.23  Aligned_cols=180  Identities=18%  Similarity=0.186  Sum_probs=124.1

Q ss_pred             CCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccC--Ccc-cccccCCcccEE
Q 036679           10 SSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNED--RLA-RVSICGPNVRLV   83 (294)
Q Consensus        10 ~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~--~l~-~~~~~~~~L~~L   83 (294)
                      ++|++|++++|.+++.. ...+..+++|++|++++|. +..+.   +.++++|++|+++++.  .+. ......++|+.|
T Consensus        28 ~~l~~L~ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (276)
T ss_dssp             TTCCEEECTTCCCCEEC-TTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CCccEEECCCCcccccC-HhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence            57999999999886421 2246789999999999984 44442   5567899999999885  111 112246899999


Q ss_pred             EeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccc----cccc----eEEe
Q 036679           84 DISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISS----PYLK----KLLV  153 (294)
Q Consensus        84 ~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~----~~L~----~L~l  153 (294)
                      +++++....  +..+..+++|++|+++++.+++..++..+.++++|+.|+++++. ++.+....    ++|+    +|++
T Consensus       106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~l  184 (276)
T 2z62_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDL  184 (276)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEEEC
T ss_pred             ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceeeec
Confidence            999987432  23467889999999999988764345667889999999999864 44443221    4555    7788


Q ss_pred             ecccCceeee---ccCCCccEEEEcCceee-----eecCccccceEEE
Q 036679          154 RFCNKLYEFK---LDTPNLSVFDYEGDMVS-----FSSNALALSETSL  193 (294)
Q Consensus       154 ~~c~~l~~~~---~~~p~L~~l~~~g~~~~-----~~~~~~~L~~~~i  193 (294)
                      +++. ++.++   ...++|+.++++++...     .+...++|+.+.+
T Consensus       185 s~n~-l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  231 (276)
T 2z62_A          185 SLNP-MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL  231 (276)
T ss_dssp             CSSC-CCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEEC
T ss_pred             CCCc-ccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEc
Confidence            7775 33443   23447888888887651     1233455666655

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.22  E-value=1.1e-10  Score=93.85  Aligned_cols=142  Identities=13%  Similarity=0.143  Sum_probs=85.6

Q ss_pred             CCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccCCcccc--cccCCcccEEEeeCCCCCc--ccccccccccceEEec
Q 036679           34 CPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNEDRLARV--SICGPNVRLVDISSLHAPC--GINVALCKNLKELKLF  108 (294)
Q Consensus        34 ~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~~l~~~--~~~~~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~  108 (294)
                      +++|++|+++++. +..+ .+..+++|++|++++|. +..+  ...+++|++|++++|....  +..+..+++|++|+++
T Consensus        43 l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           43 MNSLTYITLANIN-VTDLTGIEYAHNIKDLTINNIH-ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             HHTCCEEEEESSC-CSCCTTGGGCTTCSEEEEESCC-CSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             cCCccEEeccCCC-ccChHHHhcCCCCCEEEccCCC-CCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            3455555555542 1111 23344555666665552 2111  1135677777777776432  3446678888888888


Q ss_pred             ccccChHHHHHHhcCCCCCcEEeecccccceeecc-c-ccccceEEeecccCceeee--ccCCCccEEEEcCcee
Q 036679          109 KLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKI-S-SPYLKKLLVRFCNKLYEFK--LDTPNLSVFDYEGDMV  179 (294)
Q Consensus       109 ~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i-~-~~~L~~L~l~~c~~l~~~~--~~~p~L~~l~~~g~~~  179 (294)
                      ++.+++.. ...+..+++|+.|++++|..++.++. . .++|++|++++|. +++++  ...|+|+.+++.|+.+
T Consensus       121 ~n~i~~~~-~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          121 HSAHDDSI-LTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             SSBCBGGG-HHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECBC--
T ss_pred             CCccCcHh-HHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC-CcChHHhccCCCCCEEEeeCccc
Confidence            88887643 34467788899999888775665542 1 2688888888876 33332  3467888888887653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.22  E-value=8.9e-12  Score=110.82  Aligned_cols=246  Identities=12%  Similarity=-0.019  Sum_probs=141.2

Q ss_pred             EeeecccChHHH---HHHHhcCCCCCEEEEEcCCCC----Cee--ccCCCCCccEEEccccC--Ccc-----cc------
Q 036679           16 GLFKCAANDEAI---RDIVAGCPLIERLKIIDCRGL----KSL--EFLNLGKLSKFMVRNED--RLA-----RV------   73 (294)
Q Consensus        16 ~L~~~~~~~~~l---~~~~~~~~~Le~L~L~~c~~l----~~l--~~~~l~~L~~L~l~~c~--~l~-----~~------   73 (294)
                      .|..+.+++..+   ...+..+++|++|++++|.--    ..+  .+..+++|++|++++|.  .+.     .+      
T Consensus        10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~   89 (386)
T 2ca6_A           10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA   89 (386)
T ss_dssp             CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred             ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence            334444555443   445778999999999998411    111  14467899999998873  221     11      


Q ss_pred             cccCCcccEEEeeCCCCCc------ccccccccccceEEecccccChHH---HHHHhcCC---------CCCcEEeeccc
Q 036679           74 SICGPNVRLVDISSLHAPC------GINVALCKNLKELKLFKLSITNEW---LCNQFSEL---------PFLEYLEIFRC  135 (294)
Q Consensus        74 ~~~~~~L~~L~l~~c~~~~------~~~~~~~~~L~~L~L~~~~i~~~~---l~~l~~~~---------~~L~~L~l~~c  135 (294)
                      ...+++|++|++++|.+..      +..+..+++|++|++++|.+++..   +...+..+         ++|+.|++++|
T Consensus        90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n  169 (386)
T 2ca6_A           90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  169 (386)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence            0245788888888877432      123566788888888888776532   23333334         78888888775


Q ss_pred             ccceeecc--------cccccceEEeecccCce-e-------eeccCCCccEEEEcCceeeeecCccccceEEEEEEEec
Q 036679          136 MKIRSIKI--------SSPYLKKLLVRFCNKLY-E-------FKLDTPNLSVFDYEGDMVSFSSNALALSETSLCLDSIN  199 (294)
Q Consensus       136 ~~l~~l~i--------~~~~L~~L~l~~c~~l~-~-------~~~~~p~L~~l~~~g~~~~~~~~~~~L~~~~i~~~~~~  199 (294)
                      . ++...+        ..++|++|++++|..-. .       .-...++|+.|+++++.+                    
T Consensus       170 ~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l--------------------  228 (386)
T 2ca6_A          170 R-LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF--------------------  228 (386)
T ss_dssp             C-CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC--------------------
T ss_pred             C-CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC--------------------
Confidence            4 221111        12467777777764210 0       011344555555544321                    


Q ss_pred             cChhHHHHHHHHHhcCcccceeEEEeeeeeee-----cchhhhhccCCCCCCCceEEEEEccccchhhHHHHHHHHhhcC
Q 036679          200 VDNQWLVKFIELLAKLNHCSNVLNLECYAAAI-----IPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWIS  274 (294)
Q Consensus       200 ~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~~-----~p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~  274 (294)
                       ...-...+...+..+++|+.| .++.+....     +++.+.   ...+++|++|.|..|.... .+...+...+...+
T Consensus       229 -~~~g~~~l~~~l~~~~~L~~L-~L~~n~i~~~~~~~l~~~l~---~~~~~~L~~L~L~~n~i~~-~g~~~l~~~l~~~l  302 (386)
T 2ca6_A          229 -THLGSSALAIALKSWPNLREL-GLNDCLLSARGAAAVVDAFS---KLENIGLQTLRLQYNEIEL-DAVRTLKTVIDEKM  302 (386)
T ss_dssp             -HHHHHHHHHHHGGGCTTCCEE-ECTTCCCCHHHHHHHHHHHH---TCSSCCCCEEECCSSCCBH-HHHHHHHHHHHHHC
T ss_pred             -CcHHHHHHHHHHccCCCcCEE-ECCCCCCchhhHHHHHHHHh---hccCCCeEEEECcCCcCCH-HHHHHHHHHHHhcC
Confidence             111123345566778888884 666544322     344321   1347899999999754422 22333444444778


Q ss_pred             CCCCeeEEeeCCCC
Q 036679          275 PHAETLSIKCNDCD  288 (294)
Q Consensus       275 P~le~l~i~~~~~~  288 (294)
                      |+|++|.+.....+
T Consensus       303 ~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          303 PDLLFLELNGNRFS  316 (386)
T ss_dssp             TTCCEEECTTSBSC
T ss_pred             CCceEEEccCCcCC
Confidence            99999999886544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.22  E-value=2e-11  Score=105.53  Aligned_cols=167  Identities=14%  Similarity=0.090  Sum_probs=95.0

Q ss_pred             ccEEEeeecccChHHHHHH-------HhcCCCCCEEEEEcCCCCCee--c--cCCCCCccEEEccccC--Cccccccc--
Q 036679           12 LRELGLFKCAANDEAIRDI-------VAGCPLIERLKIIDCRGLKSL--E--FLNLGKLSKFMVRNED--RLARVSIC--   76 (294)
Q Consensus        12 Lk~L~L~~~~~~~~~l~~~-------~~~~~~Le~L~L~~c~~l~~l--~--~~~l~~L~~L~l~~c~--~l~~~~~~--   76 (294)
                      |+.|+|+++.+....++..       ...+++|++|+++++.--..+  .  +.++++|++|+++++.  ........  
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~  144 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ  144 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence            6666776665532111111       225778888888877521111  1  2556778888887765  11110001  


Q ss_pred             ---CCcccEEEeeCCCCCc--ccccccccccceEEecccccChH-HHHHHh--cCCCCCcEEeecccccceeec-c----
Q 036679           77 ---GPNVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNE-WLCNQF--SELPFLEYLEIFRCMKIRSIK-I----  143 (294)
Q Consensus        77 ---~~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~-~l~~l~--~~~~~L~~L~l~~c~~l~~l~-i----  143 (294)
                         .++|++|++++|....  +..+..+++|++|+++++.+.+. .+...+  ..+++|+.|+++++. ++.+. +    
T Consensus       145 ~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~  223 (312)
T 1wwl_A          145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSAL  223 (312)
T ss_dssp             TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHH
T ss_pred             HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHH
Confidence               2678888888776321  23456777888888888775542 122222  667888888888754 33221 1    


Q ss_pred             --cccccceEEeecccCceeee----ccCCCccEEEEcCcee
Q 036679          144 --SSPYLKKLLVRFCNKLYEFK----LDTPNLSVFDYEGDMV  179 (294)
Q Consensus       144 --~~~~L~~L~l~~c~~l~~~~----~~~p~L~~l~~~g~~~  179 (294)
                        ..++|++|+++++......+    ...++|+.|+++++.+
T Consensus       224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l  265 (312)
T 1wwl_A          224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL  265 (312)
T ss_dssp             HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC
T ss_pred             HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc
Confidence              11578888887776333221    1246788888877755

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.21  E-value=4.7e-11  Score=100.92  Aligned_cols=123  Identities=16%  Similarity=0.106  Sum_probs=52.2

Q ss_pred             CCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccC--Cccc-ccccCCcccEE
Q 036679           10 SSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNED--RLAR-VSICGPNVRLV   83 (294)
Q Consensus        10 ~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~--~l~~-~~~~~~~L~~L   83 (294)
                      ++|++|+|+++.++.- ....+..+++|++|+++++. +..+.   +.++++|++|+++++.  .+.. .....++|+.|
T Consensus        37 ~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  114 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL  114 (270)
T ss_dssp             TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEE
T ss_pred             CCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEE
Confidence            3455555555544321 11123445555555555542 22221   2334555555555543  1110 01123455555


Q ss_pred             EeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeeccc
Q 036679           84 DISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRC  135 (294)
Q Consensus        84 ~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c  135 (294)
                      +++++....  +..+..+++|++|+++++.+++. ....+..+++|+.|+++++
T Consensus       115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n  167 (270)
T 2o6q_A          115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL-PKGVFDKLTSLKELRLYNN  167 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred             ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc-CHhHccCCcccceeEecCC
Confidence            555554211  12234455555555555544331 1112344555555555543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.20  E-value=6.6e-11  Score=101.22  Aligned_cols=179  Identities=15%  Similarity=0.075  Sum_probs=104.3

Q ss_pred             CCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCCcccc--cccCCcc
Q 036679            6 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDRLARV--SICGPNV   80 (294)
Q Consensus         6 ~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~l~~~--~~~~~~L   80 (294)
                      ..++++++.+++.++.++.  ++.  .-.+.++.|+++++. +..+   .+.++++|++|+++++. +..+  ....++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~~--ip~--~~~~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTA--LPP--DLPKDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCSS--CCS--CCCTTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSC-CCEEECCSCCTTC
T ss_pred             ccccCCccEEECCCCCCCc--CCC--CCCCCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCc-cCcccCCCCCCcC
Confidence            4667778888877776642  111  113567778777764 3333   24556777777777764 2221  1245677


Q ss_pred             cEEEeeCCCCC-cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc----ccccceEEeec
Q 036679           81 RLVDISSLHAP-CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYLKKLLVRF  155 (294)
Q Consensus        81 ~~L~l~~c~~~-~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~~L~l~~  155 (294)
                      +.|+++++.+. .+..+..+++|++|+++++.++.- ....+.++++|+.|+++++. ++.+...    .++|+.|++++
T Consensus        80 ~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~  157 (290)
T 1p9a_G           80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL-PLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLAN  157 (290)
T ss_dssp             CEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCC-CSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTT
T ss_pred             CEEECCCCcCCcCchhhccCCCCCEEECCCCcCccc-CHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCC
Confidence            77777777632 223345667777888777776542 12335667778888777743 4444321    15777777777


Q ss_pred             ccCceeeec----cCCCccEEEEcCceeee----ecCccccceEEE
Q 036679          156 CNKLYEFKL----DTPNLSVFDYEGDMVSF----SSNALALSETSL  193 (294)
Q Consensus       156 c~~l~~~~~----~~p~L~~l~~~g~~~~~----~~~~~~L~~~~i  193 (294)
                      +. ++.++.    ..++|+.++++++.+..    .....+++.+.+
T Consensus       158 N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L  202 (290)
T 1p9a_G          158 NN-LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL  202 (290)
T ss_dssp             SC-CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEEC
T ss_pred             Cc-CCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEe
Confidence            65 334432    34677777777765521    122334666655

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.20  E-value=4.2e-11  Score=99.30  Aligned_cols=168  Identities=11%  Similarity=0.027  Sum_probs=120.9

Q ss_pred             CCCCCCCCccEEEeeecc-cChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccC--CcccccccC
Q 036679            4 TRNVTLSSLRELGLFKCA-ANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNED--RLARVSICG   77 (294)
Q Consensus         4 ~~~~~l~~Lk~L~L~~~~-~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~--~l~~~~~~~   77 (294)
                      ..+..+++|++|++++|. ++. .....+.++++|++|++++|..+..+.   +.++++|++|+++++.  .+.. ....
T Consensus        49 ~~~~~l~~L~~L~l~~n~~l~~-i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l  126 (239)
T 2xwt_C           49 HAFSNLPNISRIYVSIDVTLQQ-LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKV  126 (239)
T ss_dssp             TTTTTCTTCCEEEEECCSSCCE-ECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTC
T ss_pred             HHccCCCCCcEEeCCCCCCcce-eCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccc
Confidence            356789999999999996 643 112246789999999999977777664   3467899999999885  3322 1245


Q ss_pred             Cccc---EEEeeCC-CCCc--ccccccccccc-eEEecccccChHHHH-HHhcCCCCCcEEeecccccceeeccc----c
Q 036679           78 PNVR---LVDISSL-HAPC--GINVALCKNLK-ELKLFKLSITNEWLC-NQFSELPFLEYLEIFRCMKIRSIKIS----S  145 (294)
Q Consensus        78 ~~L~---~L~l~~c-~~~~--~~~~~~~~~L~-~L~L~~~~i~~~~l~-~l~~~~~~L~~L~l~~c~~l~~l~i~----~  145 (294)
                      ++|+   .|+++++ ....  +..+..+++|+ +|+++++.++.  ++ ..+.. ++|+.|++++++.++.+...    .
T Consensus       127 ~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~--i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l  203 (239)
T 2xwt_C          127 YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS--VQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGV  203 (239)
T ss_dssp             CBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE--ECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTC
T ss_pred             cccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc--cCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhcc
Confidence            6676   9999999 5432  23467889999 99999998763  22 22333 79999999998667766432    3


Q ss_pred             -cccceEEeecccCceeeec-cCCCccEEEEcCc
Q 036679          146 -PYLKKLLVRFCNKLYEFKL-DTPNLSVFDYEGD  177 (294)
Q Consensus       146 -~~L~~L~l~~c~~l~~~~~-~~p~L~~l~~~g~  177 (294)
                       ++|+.|+++++. ++.++. ..++|+.|++.+.
T Consensus       204 ~~~L~~L~l~~N~-l~~l~~~~~~~L~~L~l~~~  236 (239)
T 2xwt_C          204 YSGPSLLDVSQTS-VTALPSKGLEHLKELIARNT  236 (239)
T ss_dssp             SBCCSEEECTTCC-CCCCCCTTCTTCSEEECTTC
T ss_pred             ccCCcEEECCCCc-cccCChhHhccCceeeccCc
Confidence             689999999875 444443 4678888887654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.20  E-value=7.6e-11  Score=99.79  Aligned_cols=166  Identities=13%  Similarity=0.060  Sum_probs=109.8

Q ss_pred             CCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccC--Ccccc-cccCCcccE
Q 036679            7 VTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNED--RLARV-SICGPNVRL   82 (294)
Q Consensus         7 ~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~--~l~~~-~~~~~~L~~   82 (294)
                      ..+++|+.|+++++.+.+  +. -+..+++|++|+++++. +..+ .+..+++|++|++++|.  .+..- ...+++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~--~~-~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKS--VQ-GIQYLPNVRYLALGGNK-LHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHHTTCCEEECTTSCCCC--CT-TGGGCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             ccccceeeeeeCCCCccc--cc-ccccCCCCcEEECCCCC-CCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence            346788889988887753  11 15678899999988875 3222 35567888888888875  22111 124678888


Q ss_pred             EEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecc---c-ccccceEEeecc
Q 036679           83 VDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKI---S-SPYLKKLLVRFC  156 (294)
Q Consensus        83 L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i---~-~~~L~~L~l~~c  156 (294)
                      |++++|....  +..+..+++|++|+++++.+++. ....+..+++|+.|+++++. ++.+..   . .++|++|++++|
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSL-PKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccCcc-CHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCC
Confidence            8888887432  22356778888888888877642 22345678888888888864 444432   1 268888888887


Q ss_pred             cCceeee----ccCCCccEEEEcCcee
Q 036679          157 NKLYEFK----LDTPNLSVFDYEGDMV  179 (294)
Q Consensus       157 ~~l~~~~----~~~p~L~~l~~~g~~~  179 (294)
                      ... .+.    ...++|+.+++.++..
T Consensus       192 ~l~-~~~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          192 QLK-SVPDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             CCS-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred             cCC-ccCHHHHhCCcCCCEEEccCCCc
Confidence            633 332    2457788888777654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.19  E-value=2.1e-11  Score=105.32  Aligned_cols=183  Identities=15%  Similarity=0.115  Sum_probs=124.4

Q ss_pred             CCCCccEEEeeecccChHHHHHH-HhcCCCCCEEEEEcCCCCCeec--cCC-----CCCccEEEccccC--Ccc-ccccc
Q 036679            8 TLSSLRELGLFKCAANDEAIRDI-VAGCPLIERLKIIDCRGLKSLE--FLN-----LGKLSKFMVRNED--RLA-RVSIC   76 (294)
Q Consensus         8 ~l~~Lk~L~L~~~~~~~~~l~~~-~~~~~~Le~L~L~~c~~l~~l~--~~~-----l~~L~~L~l~~c~--~l~-~~~~~   76 (294)
                      .+++|++|+|++|.+++.....+ +..+++|++|+++++. +....  +..     .++|++|+++++.  .+. .....
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            68999999999998864333322 3789999999999985 32211  112     2789999999886  222 11225


Q ss_pred             CCcccEEEeeCCCCCc----c--cccccccccceEEecccccCh--HHHHHHhcCCCCCcEEeecccccceeec-cc---
Q 036679           77 GPNVRLVDISSLHAPC----G--INVALCKNLKELKLFKLSITN--EWLCNQFSELPFLEYLEIFRCMKIRSIK-IS---  144 (294)
Q Consensus        77 ~~~L~~L~l~~c~~~~----~--~~~~~~~~L~~L~L~~~~i~~--~~l~~l~~~~~~L~~L~l~~c~~l~~l~-i~---  144 (294)
                      .++|+.|++++|....    +  ..+..+++|++|+++++.+++  .....++.++++|+.|+++++. ++... ..   
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~  250 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSCD  250 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCCC
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhhh
Confidence            6899999999997321    1  223788999999999999874  2234556788999999999865 43322 11   


Q ss_pred             -ccccceEEeecccCceeeeccC-CCccEEEEcCceeee---ecCccccceEEE
Q 036679          145 -SPYLKKLLVRFCNKLYEFKLDT-PNLSVFDYEGDMVSF---SSNALALSETSL  193 (294)
Q Consensus       145 -~~~L~~L~l~~c~~l~~~~~~~-p~L~~l~~~g~~~~~---~~~~~~L~~~~i  193 (294)
                       .++|++|+++++.. +.++... ++|+.++++++.+..   +...++|+.+++
T Consensus       251 ~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L  303 (312)
T 1wwl_A          251 WPSQLNSLNLSFTGL-KQVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSL  303 (312)
T ss_dssp             CCTTCCEEECTTSCC-SSCCSSCCSEEEEEECCSSCCCSCCCTTTSCEEEEEEC
T ss_pred             hcCCCCEEECCCCcc-ChhhhhccCCceEEECCCCCCCCChhHhhCCCCCEEec
Confidence             26899999999873 3554322 689999999887622   223344555544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.19  E-value=6.1e-11  Score=111.43  Aligned_cols=162  Identities=15%  Similarity=0.128  Sum_probs=74.5

Q ss_pred             CCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccC--CcccccccCCcccEEEee
Q 036679            9 LSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNED--RLARVSICGPNVRLVDIS   86 (294)
Q Consensus         9 l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~   86 (294)
                      +++|+.|++++|.+.+  ++ -+..+++|+.|+|++|.--....+..+++|+.|++++|.  .+.. ...+++|+.|+++
T Consensus        42 L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls  117 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSS-LKDLKKLKSLSLE  117 (605)
T ss_dssp             HTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTT-STTCTTCCEEECT
T ss_pred             CCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChh-hccCCCCCEEEec
Confidence            4555555555555432  11 144555666666655531111113445555555555553  1111 1134555555555


Q ss_pred             CCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceee-cccc-cccceEEeecccCceeee-
Q 036679           87 SLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSI-KISS-PYLKKLLVRFCNKLYEFK-  163 (294)
Q Consensus        87 ~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l-~i~~-~~L~~L~l~~c~~l~~~~-  163 (294)
                      +|.+.....+..+++|+.|+|+++.+++.   ..+..+++|+.|+|++|. +..+ ++.. ++|+.|++++|. ++.++ 
T Consensus       118 ~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-i~~l~~  192 (605)
T 1m9s_A          118 HNGISDINGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSKNH-ISDLRA  192 (605)
T ss_dssp             TSCCCCCGGGGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCBCGG
T ss_pred             CCCCCCCccccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCc-CCCchhhccCCCCCEEECcCCC-CCCChH
Confidence            55533222344555555555555555432   234455555555555543 2222 1111 455555555553 22222 


Q ss_pred             -ccCCCccEEEEcCcee
Q 036679          164 -LDTPNLSVFDYEGDMV  179 (294)
Q Consensus       164 -~~~p~L~~l~~~g~~~  179 (294)
                       ...++|+.|++.++.+
T Consensus       193 l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          193 LAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             GTTCTTCSEEECCSEEE
T ss_pred             HccCCCCCEEEccCCcC
Confidence             1345555555555443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.18  E-value=2.4e-11  Score=104.83  Aligned_cols=183  Identities=13%  Similarity=0.076  Sum_probs=111.7

Q ss_pred             CCCccEEEeeecccChHHHHHHH-hcCCCCCEEEEEcCCCCC------eeccCCCCCccEEEccccCC--ccc-ccccCC
Q 036679            9 LSSLRELGLFKCAANDEAIRDIV-AGCPLIERLKIIDCRGLK------SLEFLNLGKLSKFMVRNEDR--LAR-VSICGP   78 (294)
Q Consensus         9 l~~Lk~L~L~~~~~~~~~l~~~~-~~~~~Le~L~L~~c~~l~------~l~~~~l~~L~~L~l~~c~~--l~~-~~~~~~   78 (294)
                      +++|++|++++|.+++.....++ ..+++|++|+++++.--.      ...+..+++|++|++++|.-  +.. .....+
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            45688888888876543222222 677888888888875221      12234567888888887752  111 112467


Q ss_pred             cccEEEeeCCCCCc------ccccccccccceEEecccccCh--HHHHHHhcCCCCCcEEeecccccceee-c--cc-c-
Q 036679           79 NVRLVDISSLHAPC------GINVALCKNLKELKLFKLSITN--EWLCNQFSELPFLEYLEIFRCMKIRSI-K--IS-S-  145 (294)
Q Consensus        79 ~L~~L~l~~c~~~~------~~~~~~~~~L~~L~L~~~~i~~--~~l~~l~~~~~~L~~L~l~~c~~l~~l-~--i~-~-  145 (294)
                      +|++|++++|....      ...+..+++|++|+++++.++.  .....++.++++|+.|+++++. ++.. +  +. . 
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~  248 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAPRCM  248 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhHHhcc
Confidence            88888888886321      1223567888888888888763  1122245677888888888754 3332 1  11 1 


Q ss_pred             --cccceEEeecccCceeeecc-CCCccEEEEcCceee---eecCccccceEEE
Q 036679          146 --PYLKKLLVRFCNKLYEFKLD-TPNLSVFDYEGDMVS---FSSNALALSETSL  193 (294)
Q Consensus       146 --~~L~~L~l~~c~~l~~~~~~-~p~L~~l~~~g~~~~---~~~~~~~L~~~~i  193 (294)
                        ++|++|+++++.. +.++.. .++|+.|+++++.+.   .+...++|+.+.+
T Consensus       249 ~~~~L~~L~Ls~N~l-~~lp~~~~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L  301 (310)
T 4glp_A          249 WSSALNSLNLSFAGL-EQVPKGLPAKLRVLDLSSNRLNRAPQPDELPEVDNLTL  301 (310)
T ss_dssp             CCTTCCCEECCSSCC-CSCCSCCCSCCSCEECCSCCCCSCCCTTSCCCCSCEEC
T ss_pred             CcCcCCEEECCCCCC-CchhhhhcCCCCEEECCCCcCCCCchhhhCCCccEEEC
Confidence              5788888887763 344322 368888888877652   2234456666655

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.17  E-value=7.6e-11  Score=94.88  Aligned_cols=143  Identities=18%  Similarity=0.154  Sum_probs=108.0

Q ss_pred             CCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccCCcc---cccccCCcccE
Q 036679            7 VTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNEDRLA---RVSICGPNVRL   82 (294)
Q Consensus         7 ~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~~l~---~~~~~~~~L~~   82 (294)
                      ..+++|++|+++++.+++  ++ -+..+++|++|++++| .+..+ .+..+++|++|+++++.--.   .....+++|+.
T Consensus        41 ~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTD--LT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCSC--CT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCccC--hH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            457899999999998864  22 3788999999999999 44443 46678999999999986211   11225689999


Q ss_pred             EEeeCCCCCc--ccccccccccceEEecccc-cChHHHHHHhcCCCCCcEEeecccccceeec-ccc-cccceEEeeccc
Q 036679           83 VDISSLHAPC--GINVALCKNLKELKLFKLS-ITNEWLCNQFSELPFLEYLEIFRCMKIRSIK-ISS-PYLKKLLVRFCN  157 (294)
Q Consensus        83 L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~-i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~-i~~-~~L~~L~l~~c~  157 (294)
                      |++++|....  +..+..+++|++|+++++. +++-  + .+..+++|+.|++++|. ++.+. +.. ++|++|++++..
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~--~-~l~~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--M-PLKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC--G-GGGGCSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECBC-
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc--H-hhcCCCCCCEEECCCCC-CcChHHhccCCCCCEEEeeCcc
Confidence            9999998543  3456788999999999997 7653  3 47789999999999875 45443 222 789999998765

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.17  E-value=6.9e-10  Score=97.35  Aligned_cols=119  Identities=14%  Similarity=0.162  Sum_probs=52.2

Q ss_pred             CCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCCcccc----cccCCcccEEEeeCCCCCc-c-cccccccccceE
Q 036679           35 PLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDRLARV----SICGPNVRLVDISSLHAPC-G-INVALCKNLKEL  105 (294)
Q Consensus        35 ~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~c~~~~-~-~~~~~~~~L~~L  105 (294)
                      ++|++|+++++. +..+   .+.++++|++|+++++. +..+    ....++|++|++++|.... + ..+..+++|++|
T Consensus        52 ~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  129 (353)
T 2z80_A           52 EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL  129 (353)
T ss_dssp             TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEE
T ss_pred             ccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEE
Confidence            355555555543 2222   13344555555555543 1111    1123455555555554221 1 113445555555


Q ss_pred             EecccccChHHHHH--HhcCCCCCcEEeecccccceeeccc----ccccceEEeeccc
Q 036679          106 KLFKLSITNEWLCN--QFSELPFLEYLEIFRCMKIRSIKIS----SPYLKKLLVRFCN  157 (294)
Q Consensus       106 ~L~~~~i~~~~l~~--l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~~L~l~~c~  157 (294)
                      +++++.+++  ++.  .+.++++|+.|+++++..++.+...    .++|++|++++|.
T Consensus       130 ~L~~n~l~~--l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          130 NLLGNPYKT--LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD  185 (353)
T ss_dssp             ECTTCCCSS--SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             ECCCCCCcc--cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence            555554442  111  2344555555555554333333211    1355555555544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.16  E-value=8.4e-11  Score=99.53  Aligned_cols=161  Identities=17%  Similarity=0.117  Sum_probs=117.3

Q ss_pred             CCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccC--Ccccc-cccCC
Q 036679            5 RNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNED--RLARV-SICGP   78 (294)
Q Consensus         5 ~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~--~l~~~-~~~~~   78 (294)
                      .+..+++|++|++++|.+++  +. .+..+++|++|++++|. +..+.   +.++++|++|++++|.  .+..- ....+
T Consensus        58 ~l~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  133 (272)
T 3rfs_A           58 GIQYLPNVRYLALGGNKLHD--IS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT  133 (272)
T ss_dssp             TGGGCTTCCEEECTTSCCCC--CG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred             ccccCCCCcEEECCCCCCCC--ch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCC
Confidence            46679999999999998865  22 46789999999999984 33332   4678999999999986  22211 12468


Q ss_pred             cccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc----ccccceEE
Q 036679           79 NVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYLKKLL  152 (294)
Q Consensus        79 ~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~~L~  152 (294)
                      +|+.|++++|.+..  +..+..+++|++|+++++.+++. ....+..+++|+.|+++++. ++.+...    .++|++|+
T Consensus       134 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~  211 (272)
T 3rfs_A          134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL-PEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIW  211 (272)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc-CHHHhcCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEE
Confidence            99999999997432  23357889999999999988753 23446789999999999865 4444322    27999999


Q ss_pred             eecccCceeeeccCCCccEEEEc
Q 036679          153 VRFCNKLYEFKLDTPNLSVFDYE  175 (294)
Q Consensus       153 l~~c~~l~~~~~~~p~L~~l~~~  175 (294)
                      +++++..    ..+|+++.++..
T Consensus       212 l~~N~~~----~~~~~l~~l~~~  230 (272)
T 3rfs_A          212 LHDNPWD----CTCPGIRYLSEW  230 (272)
T ss_dssp             CCSSCBC----CCTTTTHHHHHH
T ss_pred             ccCCCcc----ccCcHHHHHHHH
Confidence            9988632    346666665544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.16  E-value=3.2e-11  Score=104.05  Aligned_cols=210  Identities=13%  Similarity=0.070  Sum_probs=139.0

Q ss_pred             CCCCccEEEeeecccChHHHHHHHh--cCCCCCEEEEEcCCCC--Ceecc--CCCCCccEEEccccCCccc------c-c
Q 036679            8 TLSSLRELGLFKCAANDEAIRDIVA--GCPLIERLKIIDCRGL--KSLEF--LNLGKLSKFMVRNEDRLAR------V-S   74 (294)
Q Consensus         8 ~l~~Lk~L~L~~~~~~~~~l~~~~~--~~~~Le~L~L~~c~~l--~~l~~--~~l~~L~~L~l~~c~~l~~------~-~   74 (294)
                      +-..++.|.+.++.+++..+..+..  .+++|++|++++|.--  ....+  ..+++|++|+++++.--..      . .
T Consensus        62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~  141 (310)
T 4glp_A           62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ  141 (310)
T ss_dssp             SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred             hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence            3456889999999887765554432  4577999999998622  22223  5678999999999862111      1 1


Q ss_pred             ccCCcccEEEeeCCCCC--cccccccccccceEEecccccChH-HHHH--HhcCCCCCcEEeecccccceeecc------
Q 036679           75 ICGPNVRLVDISSLHAP--CGINVALCKNLKELKLFKLSITNE-WLCN--QFSELPFLEYLEIFRCMKIRSIKI------  143 (294)
Q Consensus        75 ~~~~~L~~L~l~~c~~~--~~~~~~~~~~L~~L~L~~~~i~~~-~l~~--l~~~~~~L~~L~l~~c~~l~~l~i------  143 (294)
                      ...++|++|++++|...  .+..+..+++|++|+++++.+.+. .+..  .+..+++|++|++++|. ++.+..      
T Consensus       142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~  220 (310)
T 4glp_A          142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALA  220 (310)
T ss_dssp             TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHH
T ss_pred             hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHH
Confidence            24789999999999843  224567889999999999986653 2322  23578999999999974 444321      


Q ss_pred             -cccccceEEeecccCceeee---cc---CCCccEEEEcCceeeee--cCccccceEEEEEEEeccChhHHHHHHHHHhc
Q 036679          144 -SSPYLKKLLVRFCNKLYEFK---LD---TPNLSVFDYEGDMVSFS--SNALALSETSLCLDSINVDNQWLVKFIELLAK  214 (294)
Q Consensus       144 -~~~~L~~L~l~~c~~l~~~~---~~---~p~L~~l~~~g~~~~~~--~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~  214 (294)
                       ..++|++|+++++......+   ..   .++|++|+++++.+...  ...++|+.+++....+...        ..+..
T Consensus       221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~~--------~~~~~  292 (310)
T 4glp_A          221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNRA--------PQPDE  292 (310)
T ss_dssp             HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCSC--------CCTTS
T ss_pred             hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCCC--------chhhh
Confidence             12799999999987433222   12   27999999998876221  1235788887743322111        11456


Q ss_pred             CcccceeEEEeee
Q 036679          215 LNHCSNVLNLECY  227 (294)
Q Consensus       215 l~~l~~LL~~~~~  227 (294)
                      +++++.| .++.+
T Consensus       293 l~~L~~L-~L~~N  304 (310)
T 4glp_A          293 LPEVDNL-TLDGN  304 (310)
T ss_dssp             CCCCSCE-ECSST
T ss_pred             CCCccEE-ECcCC
Confidence            7778874 66544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.15  E-value=9.1e-11  Score=99.38  Aligned_cols=171  Identities=16%  Similarity=0.125  Sum_probs=121.5

Q ss_pred             CCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccC--Ccccc-cccC
Q 036679            4 TRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNED--RLARV-SICG   77 (294)
Q Consensus         4 ~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~--~l~~~-~~~~   77 (294)
                      ..+.++++|++|++++|.++.. ....+..+++|++|+++++. +..+.   +.++++|++|+++++.  .+... ....
T Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  123 (276)
T 2z62_A           46 YSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL  123 (276)
T ss_dssp             TTTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTC
T ss_pred             hHhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEECCCCCccccCchhcccC
Confidence            3667899999999999987541 12346789999999999885 43332   5678999999999886  22221 2246


Q ss_pred             CcccEEEeeCCCCC---cccccccccccceEEecccccChH---HHHHHhcCCCCCc-EEeecccccceeecccc---cc
Q 036679           78 PNVRLVDISSLHAP---CGINVALCKNLKELKLFKLSITNE---WLCNQFSELPFLE-YLEIFRCMKIRSIKISS---PY  147 (294)
Q Consensus        78 ~~L~~L~l~~c~~~---~~~~~~~~~~L~~L~L~~~~i~~~---~l~~l~~~~~~L~-~L~l~~c~~l~~l~i~~---~~  147 (294)
                      ++|+.|+++++...   .+..+..+++|++|+++++.+++.   .+.. +.+.+.|. .|+++++. ++.+....   .+
T Consensus       124 ~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~l~l~L~ls~n~-l~~~~~~~~~~~~  201 (276)
T 2z62_A          124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNP-MNFIQPGAFKEIR  201 (276)
T ss_dssp             TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH-HHTCTTCCEEEECCSSC-CCEECTTSSCSCC
T ss_pred             CCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh-hhhccccceeeecCCCc-ccccCccccCCCc
Confidence            89999999999743   245677889999999999987652   2222 22344444 88988854 55543222   48


Q ss_pred             cceEEeecccCceeee----ccCCCccEEEEcCcee
Q 036679          148 LKKLLVRFCNKLYEFK----LDTPNLSVFDYEGDMV  179 (294)
Q Consensus       148 L~~L~l~~c~~l~~~~----~~~p~L~~l~~~g~~~  179 (294)
                      |++|+++++. ++.++    ...++|+.+++.+++.
T Consensus       202 L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~  236 (276)
T 2z62_A          202 LKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPW  236 (276)
T ss_dssp             EEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred             ccEEECCCCc-eeecCHhHhcccccccEEEccCCcc
Confidence            9999999987 44444    2468999999998865

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.15  E-value=2.8e-10  Score=97.31  Aligned_cols=143  Identities=15%  Similarity=0.104  Sum_probs=110.7

Q ss_pred             CCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccC--CcccccccCCcccE
Q 036679            6 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNED--RLARVSICGPNVRL   82 (294)
Q Consensus         6 ~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~   82 (294)
                      +..+++|++|+|++|.+++-.  . +..+++|++|+++++. +..+ .+..+++|++|++++|.  .+.. ....++|+.
T Consensus        64 ~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~i~~~~~-l~~l~~L~~  138 (291)
T 1h6t_A           64 IQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHNGISDING-LVHLPQLES  138 (291)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTSCCCCCGG-GGGCTTCCE
T ss_pred             HhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCc-CCCChhhccCCCCCEEECCCCcCCCChh-hcCCCCCCE
Confidence            567899999999999986522  2 7899999999999985 3333 25678999999999986  3322 225689999


Q ss_pred             EEeeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecc-c-ccccceEEeeccc
Q 036679           83 VDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKI-S-SPYLKKLLVRFCN  157 (294)
Q Consensus        83 L~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i-~-~~~L~~L~l~~c~  157 (294)
                      |++++|.......+..+++|+.|+++++.+++..  . +..+++|+.|+++++. ++.++. . .++|+.|++++++
T Consensus       139 L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~--~-l~~l~~L~~L~L~~N~-i~~l~~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV--P-LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             EECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEEEEEEE
T ss_pred             EEccCCcCCcchhhccCCCCCEEEccCCccccch--h-hcCCCccCEEECCCCc-CCCChhhccCCCCCEEECcCCc
Confidence            9999998544355778899999999999987632  2 7889999999999864 555432 2 2799999999886

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.13  E-value=4.9e-11  Score=105.20  Aligned_cols=146  Identities=12%  Similarity=0.052  Sum_probs=83.4

Q ss_pred             CCCccEEEeeecccCh---HHHHHHHhcCC-CCCEEEEEcCCCCCee---ccCC-----CCCccEEEccccCCcccc---
Q 036679            9 LSSLRELGLFKCAAND---EAIRDIVAGCP-LIERLKIIDCRGLKSL---EFLN-----LGKLSKFMVRNEDRLARV---   73 (294)
Q Consensus         9 l~~Lk~L~L~~~~~~~---~~l~~~~~~~~-~Le~L~L~~c~~l~~l---~~~~-----l~~L~~L~l~~c~~l~~~---   73 (294)
                      .++|++|+|++|.+++   ..+...+..++ +|++|++++|. +...   .+..     +++|++|++++|. +...   
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~   98 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSD   98 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHH
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHH
Confidence            4458888888887765   33335566777 78888888874 2111   1111     2678888888775 2111   


Q ss_pred             -----cccC-CcccEEEeeCCCCCcc--cc----ccc-ccccceEEecccccChHH---HHHHhcCCC-CCcEEeecccc
Q 036679           74 -----SICG-PNVRLVDISSLHAPCG--IN----VAL-CKNLKELKLFKLSITNEW---LCNQFSELP-FLEYLEIFRCM  136 (294)
Q Consensus        74 -----~~~~-~~L~~L~l~~c~~~~~--~~----~~~-~~~L~~L~L~~~~i~~~~---l~~l~~~~~-~L~~L~l~~c~  136 (294)
                           .... ++|++|++++|.+...  ..    +.. +++|++|+++++.+++.+   +...+...+ +|+.|++++|.
T Consensus        99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~  178 (362)
T 3goz_A           99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN  178 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred             HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence                 0112 6788888877763211  11    222 357788888877766532   333444555 78888877764


Q ss_pred             cceeecc--------cc-cccceEEeeccc
Q 036679          137 KIRSIKI--------SS-PYLKKLLVRFCN  157 (294)
Q Consensus       137 ~l~~l~i--------~~-~~L~~L~l~~c~  157 (294)
                       ++....        .. ++|++|++++|.
T Consensus       179 -l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  207 (362)
T 3goz_A          179 -LASKNCAELAKFLASIPASVTSLDLSANL  207 (362)
T ss_dssp             -GGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred             -CchhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence             322211        01 367777777665

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.12  E-value=8e-11  Score=92.15  Aligned_cols=129  Identities=28%  Similarity=0.315  Sum_probs=86.8

Q ss_pred             CCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccC--C-cccccccCCcccE
Q 036679            7 VTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNED--R-LARVSICGPNVRL   82 (294)
Q Consensus         7 ~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~--~-l~~~~~~~~~L~~   82 (294)
                      ...++|+.|++++|.+++..++..+..+++|++|++++|. +..+ .+..+++|++|++++|.  . +......+++|+.
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            3457899999999988644455556788899999998885 3322 34567788888888875  2 2222223678888


Q ss_pred             EEeeCCCCCc-c--cccccccccceEEecccccChHH--HHHHhcCCCCCcEEeecccc
Q 036679           83 VDISSLHAPC-G--INVALCKNLKELKLFKLSITNEW--LCNQFSELPFLEYLEIFRCM  136 (294)
Q Consensus        83 L~l~~c~~~~-~--~~~~~~~~L~~L~L~~~~i~~~~--l~~l~~~~~~L~~L~l~~c~  136 (294)
                      |++++|.+.. +  ..+..+++|+.|+++++.+++..  ....+..+++|+.|++++|.
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence            8888876332 1  34567778888888887766531  12356677888888877765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.12  E-value=4.2e-10  Score=105.73  Aligned_cols=145  Identities=14%  Similarity=0.098  Sum_probs=111.3

Q ss_pred             CCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccC--CcccccccCCccc
Q 036679            5 RNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNED--RLARVSICGPNVR   81 (294)
Q Consensus         5 ~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~   81 (294)
                      .+..+++|+.|+|++|.+++-.  . +..+++|+.|+|++|. +..+ .+..+++|+.|++++|.  .+.. ...+++|+
T Consensus        60 ~l~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~  134 (605)
T 1m9s_A           60 GIQYLPNVTKLFLNGNKLTDIK--P-LTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLSLEHNGISDING-LVHLPQLE  134 (605)
T ss_dssp             TGGGCTTCCEEECTTSCCCCCG--G-GGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEEECTTSCCCCCGG-GGGCTTCS
T ss_pred             HHccCCCCCEEEeeCCCCCCCh--h-hccCCCCCEEECcCCC-CCCChhhccCCCCCEEEecCCCCCCCcc-ccCCCccC
Confidence            4677999999999999886522  1 7899999999999985 3322 35678999999999986  3322 23578999


Q ss_pred             EEEeeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecc-c-ccccceEEeecccC
Q 036679           82 LVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKI-S-SPYLKKLLVRFCNK  158 (294)
Q Consensus        82 ~L~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i-~-~~~L~~L~l~~c~~  158 (294)
                      .|++++|.+.....+..+++|+.|+|+++.+++.  .. +..+++|+.|+|++|. ++.++. . .++|+.|++++|..
T Consensus       135 ~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~--~~-l~~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          135 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI--VP-LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             EEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEECCSEEE
T ss_pred             EEECCCCccCCchhhcccCCCCEEECcCCcCCCc--hh-hccCCCCCEEECcCCC-CCCChHHccCCCCCEEEccCCcC
Confidence            9999999854445577889999999999988763  22 7889999999999864 454432 2 27899999998863

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.11  E-value=1.6e-10  Score=97.59  Aligned_cols=149  Identities=18%  Similarity=0.143  Sum_probs=103.3

Q ss_pred             CCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccC--Ccccc-cccC
Q 036679            4 TRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNED--RLARV-SICG   77 (294)
Q Consensus         4 ~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~--~l~~~-~~~~   77 (294)
                      ..+..+++|++|+|++|.++. ....++..+++|++|+++++. +..+.   +.++++|++|+++++.  .+..- ....
T Consensus        55 ~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  132 (270)
T 2o6q_A           55 KAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL  132 (270)
T ss_dssp             TSSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTC
T ss_pred             HHhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcC
Confidence            356789999999999998753 223345789999999999885 33332   4567899999999875  22211 2256


Q ss_pred             CcccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc----ccccceE
Q 036679           78 PNVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYLKKL  151 (294)
Q Consensus        78 ~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~~L  151 (294)
                      ++|+.|++++|.+..  ...+..+++|++|+++++.+++. ....+.++++|+.|+++++ .++.+...    .++|+.|
T Consensus       133 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L  210 (270)
T 2o6q_A          133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV-PEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKML  210 (270)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred             cCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe-ChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEE
Confidence            899999999997432  23367889999999999987652 1234667899999999886 34444321    1345555


Q ss_pred             Eeecc
Q 036679          152 LVRFC  156 (294)
Q Consensus       152 ~l~~c  156 (294)
                      ++.++
T Consensus       211 ~l~~N  215 (270)
T 2o6q_A          211 QLQEN  215 (270)
T ss_dssp             ECCSS
T ss_pred             EecCC
Confidence            55443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.09  E-value=4.7e-10  Score=94.50  Aligned_cols=141  Identities=13%  Similarity=0.088  Sum_probs=82.9

Q ss_pred             CCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccC--CcccccccCCcccEE
Q 036679            7 VTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNED--RLARVSICGPNVRLV   83 (294)
Q Consensus         7 ~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~L   83 (294)
                      ..+++|++|++++|.+++  ++ -+..+++|++|+++++. +..+ .+.++++|++|+++++.  .+..+..  ++|+.|
T Consensus        38 ~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L  111 (263)
T 1xeu_A           38 KELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQ-ISDLSPLKDLTKLEELSVNRNRLKNLNGIPS--ACLSRL  111 (263)
T ss_dssp             HHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSSCCSCCTTCCC--SSCCEE
T ss_pred             hhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCc-cCCChhhccCCCCCEEECCCCccCCcCcccc--CcccEE
Confidence            346777777777776643  11 25667777777777764 2222 15566777777777764  2222221  677777


Q ss_pred             EeeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec-cc-ccccceEEeeccc
Q 036679           84 DISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK-IS-SPYLKKLLVRFCN  157 (294)
Q Consensus        84 ~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~-i~-~~~L~~L~l~~c~  157 (294)
                      ++++|.......+..+++|+.|+++++.+++-  . .+..+++|+.|+++++. ++.+. +. .++|++|++++++
T Consensus       112 ~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~--~-~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          112 FLDNNELRDTDSLIHLKNLEILSIRNNKLKSI--V-MLGFLSKLEVLDLHGNE-ITNTGGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             ECCSSCCSBSGGGTTCTTCCEEECTTSCCCBC--G-GGGGCTTCCEEECTTSC-CCBCTTSTTCCCCCEEEEEEEE
T ss_pred             EccCCccCCChhhcCcccccEEECCCCcCCCC--h-HHccCCCCCEEECCCCc-CcchHHhccCCCCCEEeCCCCc
Confidence            77777643333456667777777777766652  2 35567777777777643 33331 11 1466666666654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.06  E-value=8.6e-11  Score=90.08  Aligned_cols=125  Identities=27%  Similarity=0.327  Sum_probs=67.8

Q ss_pred             CCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccCC---cccccccCCcccEE
Q 036679            8 TLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNEDR---LARVSICGPNVRLV   83 (294)
Q Consensus         8 ~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~~---l~~~~~~~~~L~~L   83 (294)
                      .+++|+.|++++|.+++..++..+..+++|++|++++|. +..+ .+..+++|++|++++|.-   +.......++|+.|
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            457788888888877633444456777888888887763 3222 234556677777666641   11111124556666


Q ss_pred             EeeCCCCCc-c--cccccccccceEEecccccChHHH--HHHhcCCCCCcEEeec
Q 036679           84 DISSLHAPC-G--INVALCKNLKELKLFKLSITNEWL--CNQFSELPFLEYLEIF  133 (294)
Q Consensus        84 ~l~~c~~~~-~--~~~~~~~~L~~L~L~~~~i~~~~l--~~l~~~~~~L~~L~l~  133 (294)
                      ++++|.+.. +  ..+..+++|++|+++++.+++...  ...+..+++|+.|+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            666555321 1  334455556666666655443210  1234455555555543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.04  E-value=4.4e-10  Score=93.91  Aligned_cols=162  Identities=14%  Similarity=0.057  Sum_probs=85.5

Q ss_pred             CccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCC--CCeeccCCCCCccEEEccccC--Cccc-ccccCCcccEEEe
Q 036679           11 SLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRG--LKSLEFLNLGKLSKFMVRNED--RLAR-VSICGPNVRLVDI   85 (294)
Q Consensus        11 ~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~--l~~l~~~~l~~L~~L~l~~c~--~l~~-~~~~~~~L~~L~l   85 (294)
                      +.+.++++++.++.  ++.  .-.+.++.|+++++.-  +..-.+.++++|++|+++++.  .+.. .....++|+.|++
T Consensus        15 ~~~~l~~~~~~l~~--~p~--~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGKSLDS--VPS--GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGTEEECTTCCCSS--CCS--CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCeEEecCCCCccc--cCC--CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            45566666554421  111  1124566666666541  111123455666677666654  1111 1123466777777


Q ss_pred             eCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc----ccccceEEeecccCc
Q 036679           86 SSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYLKKLLVRFCNKL  159 (294)
Q Consensus        86 ~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~~L~l~~c~~l  159 (294)
                      +++.+..  +..+..+++|++|+++++.+++- ....+..+++|+.|+++++ .++.+...    .++|++|+++++.. 
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l-  167 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSL-PSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQL-  167 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC-
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCc-ChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcC-
Confidence            7665321  12345667777777777766532 1223456677777777764 34444321    15777777777652 


Q ss_pred             eeee----ccCCCccEEEEcCcee
Q 036679          160 YEFK----LDTPNLSVFDYEGDMV  179 (294)
Q Consensus       160 ~~~~----~~~p~L~~l~~~g~~~  179 (294)
                      +.++    ...++|+.+++.++..
T Consensus       168 ~~~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          168 QSVPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             CccCHHHHhCCCCCCEEEeeCCce
Confidence            2222    1346777777777654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.96  E-value=3.2e-09  Score=90.70  Aligned_cols=189  Identities=14%  Similarity=0.032  Sum_probs=114.4

Q ss_pred             hcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCCcccc----cccCCcccEEEeeCCCCCcccccccccccceEEe
Q 036679           32 AGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARV----SICGPNVRLVDISSLHAPCGINVALCKNLKELKL  107 (294)
Q Consensus        32 ~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~c~~~~~~~~~~~~~L~~L~L  107 (294)
                      ++++++++++++++ ++..+...-.++++.|+++++. +..+    ....++|+.|+++++.+........+++|++|++
T Consensus         7 ~~l~~l~~l~~~~~-~l~~ip~~~~~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L   84 (290)
T 1p9a_G            7 SKVASHLEVNCDKR-NLTALPPDLPKDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL   84 (290)
T ss_dssp             ECSTTCCEEECTTS-CCSSCCSCCCTTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEEC
T ss_pred             cccCCccEEECCCC-CCCcCCCCCCCCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEEC
Confidence            45677888877664 3444432223578888888775 2111    2245778888888776432222356778888888


Q ss_pred             cccccChHHHHHHhcCCCCCcEEeecccccceeeccc----ccccceEEeecccCceeeec----cCCCccEEEEcCcee
Q 036679          108 FKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYLKKLLVRFCNKLYEFKL----DTPNLSVFDYEGDMV  179 (294)
Q Consensus       108 ~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~~L~l~~c~~l~~~~~----~~p~L~~l~~~g~~~  179 (294)
                      +++.++.  ++..+..+++|+.|+++++. ++.+...    .++|++|+++++. ++.++.    ..++|+.|+++++.+
T Consensus        85 s~N~l~~--l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           85 SHNQLQS--LPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             CSSCCSS--CCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             CCCcCCc--CchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcC
Confidence            8877653  34445667788888887743 4444321    1577777777764 333331    345666666665532


Q ss_pred             eeecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEEeeeeeeecchhhhhccCCCCCCCceEEEEEccc
Q 036679          180 SFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAIIPRELREILSSPLTYENHVCFIINSE  257 (294)
Q Consensus       180 ~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~~~  257 (294)
                      .         .+         .       ...+..+++|+. |.++.+....+|++     .....+|++|.|..|..
T Consensus       161 ~---------~l---------~-------~~~~~~l~~L~~-L~L~~N~l~~ip~~-----~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          161 T---------EL---------P-------AGLLNGLENLDT-LLLQENSLYTIPKG-----FFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             S---------CC---------C-------TTTTTTCTTCCE-EECCSSCCCCCCTT-----TTTTCCCSEEECCSCCB
T ss_pred             C---------cc---------C-------HHHhcCcCCCCE-EECCCCcCCccChh-----hcccccCCeEEeCCCCc
Confidence            1         00         0       112345677777 58887777788887     34456899999987643

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.93  E-value=8.5e-10  Score=89.35  Aligned_cols=142  Identities=14%  Similarity=0.112  Sum_probs=81.3

Q ss_pred             CCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccC--Ccccc-cccCCcccE
Q 036679            9 LSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNED--RLARV-SICGPNVRL   82 (294)
Q Consensus         9 l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~--~l~~~-~~~~~~L~~   82 (294)
                      .++|++|+++++.++. .....+..+++|++|+++++. +..+.   +.++++|++|+++++.  .+... ....++|+.
T Consensus        27 ~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  104 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKE  104 (208)
T ss_dssp             CTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCcEEEcCCCccCc-CChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCE
Confidence            4678888888887753 122335677888888888763 33322   3456777788777764  11111 123567777


Q ss_pred             EEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccccccceEEeeccc
Q 036679           83 VDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISSPYLKKLLVRFCN  157 (294)
Q Consensus        83 L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~~~L~~L~l~~c~  157 (294)
                      |+++++.+..  +..+..+++|++|+++++.+++. ....+..+++|+.|++++++-.    ...++|++|+++.+.
T Consensus       105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~----~~~~~l~~L~~~~n~  176 (208)
T 2o6s_A          105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNPWD----CTCPGIRYLSEWINK  176 (208)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCCBC----CCTTTTHHHHHHHHH
T ss_pred             EEcCCCcCcccCHhHhccCCcCCEEECCCCcccee-CHHHhccCCCccEEEecCCCee----cCCCCHHHHHHHHHh
Confidence            7777765321  12245667777777777765532 1233456677777777765321    122445555554443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.91  E-value=5.3e-09  Score=88.03  Aligned_cols=123  Identities=20%  Similarity=0.248  Sum_probs=96.0

Q ss_pred             CCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec-cCCCCCccEEEccccC--CcccccccCCccc
Q 036679            5 RNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE-FLNLGKLSKFMVRNED--RLARVSICGPNVR   81 (294)
Q Consensus         5 ~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~-~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~   81 (294)
                      .+..+++|++|+|++|.+++-.  . +..+++|++|+++++. +..+. +.. ++|++|++++|.  .+.. ...+++|+
T Consensus        58 ~l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N~-l~~l~~~~~-~~L~~L~L~~N~l~~~~~-l~~l~~L~  131 (263)
T 1xeu_A           58 GMQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRNR-LKNLNGIPS-ACLSRLFLDNNELRDTDS-LIHLKNLE  131 (263)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSSC-CSCCTTCCC-SSCCEEECCSSCCSBSGG-GTTCTTCC
T ss_pred             HHhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCCc-cCCcCcccc-CcccEEEccCCccCCChh-hcCccccc
Confidence            5677899999999999986522  2 7899999999999985 33332 233 899999999985  2322 22578999


Q ss_pred             EEEeeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccc
Q 036679           82 LVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCM  136 (294)
Q Consensus        82 ~L~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~  136 (294)
                      .|++++|.......+..+++|++|+++++.+++.   ..+..+++|+.|++++++
T Consensus       132 ~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          132 ILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             EEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEE
T ss_pred             EEECCCCcCCCChHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCc
Confidence            9999999854334577889999999999998874   457789999999999854

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.89  E-value=5.4e-09  Score=92.03  Aligned_cols=168  Identities=13%  Similarity=0.098  Sum_probs=110.8

Q ss_pred             CCCC-CccEEEeeecccCh---HHHHHHHhcC-CCCCEEEEEcCCCCCeec-------cCCC-CCccEEEccccCCcccc
Q 036679            7 VTLS-SLRELGLFKCAAND---EAIRDIVAGC-PLIERLKIIDCRGLKSLE-------FLNL-GKLSKFMVRNEDRLARV   73 (294)
Q Consensus         7 ~~l~-~Lk~L~L~~~~~~~---~~l~~~~~~~-~~Le~L~L~~c~~l~~l~-------~~~l-~~L~~L~l~~c~~l~~~   73 (294)
                      ..++ +|++|+|++|.+++   ..+...+... ++|++|++++|. +....       +..+ ++|++|++++|. +...
T Consensus        47 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~  124 (362)
T 3goz_A           47 ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSK  124 (362)
T ss_dssp             HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGS
T ss_pred             HhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcH
Confidence            3566 89999999999876   3344444554 999999999986 22110       2234 789999999986 2221


Q ss_pred             c-------c-c-CCcccEEEeeCCCCCcc------ccccccc-ccceEEecccccChH---HHHHHhcCCC-CCcEEeec
Q 036679           74 S-------I-C-GPNVRLVDISSLHAPCG------INVALCK-NLKELKLFKLSITNE---WLCNQFSELP-FLEYLEIF  133 (294)
Q Consensus        74 ~-------~-~-~~~L~~L~l~~c~~~~~------~~~~~~~-~L~~L~L~~~~i~~~---~l~~l~~~~~-~L~~L~l~  133 (294)
                      .       + . ..+|++|++++|.+...      ..+...+ +|++|++++|.+++.   .+...+..++ +|+.|+++
T Consensus       125 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls  204 (362)
T 3goz_A          125 SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLS  204 (362)
T ss_dssp             CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred             HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECC
Confidence            1       1 1 35999999999974321      1223444 899999999988753   3455566774 99999999


Q ss_pred             cccccee-----ecc--c--ccccceEEeecccCceeee--------ccCCCccEEEEcCce
Q 036679          134 RCMKIRS-----IKI--S--SPYLKKLLVRFCNKLYEFK--------LDTPNLSVFDYEGDM  178 (294)
Q Consensus       134 ~c~~l~~-----l~i--~--~~~L~~L~l~~c~~l~~~~--------~~~p~L~~l~~~g~~  178 (294)
                      ++. ++.     +..  .  .++|++|++++|. +++..        -..++|+.++++++.
T Consensus       205 ~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          205 ANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             TSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             CCC-CChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence            875 433     111  1  1479999998875 32221        133566777666554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.87  E-value=2.9e-09  Score=88.82  Aligned_cols=150  Identities=16%  Similarity=0.118  Sum_probs=107.7

Q ss_pred             CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccC--Ccc-cccc
Q 036679            2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNED--RLA-RVSI   75 (294)
Q Consensus         2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~--~l~-~~~~   75 (294)
                      +|..+.  +++++|+|+++.++.. ....+.++++|++|+++++. +..+.   +.++++|++|+++++.  .+. ....
T Consensus        29 ~p~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  104 (251)
T 3m19_A           29 VPSGIP--ADTEKLDLQSTGLATL-SDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD  104 (251)
T ss_dssp             CCSCCC--TTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred             cCCCCC--CCCCEEEccCCCcCcc-CHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCCcccccChhHhc
Confidence            454443  6899999999988542 12346789999999999974 33322   4567899999999885  221 1122


Q ss_pred             cCCcccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc----ccccc
Q 036679           76 CGPNVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYLK  149 (294)
Q Consensus        76 ~~~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~  149 (294)
                      ..++|+.|+++++.+..  +..+..+++|++|+++++.+++. ....+..+++|+.|+++++. ++.+...    .++|+
T Consensus       105 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~  182 (251)
T 3m19_A          105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI-PAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQ  182 (251)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCC
T ss_pred             ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc-CHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCC
Confidence            56899999999997432  23357789999999999987752 22346788999999999864 5544321    26899


Q ss_pred             eEEeeccc
Q 036679          150 KLLVRFCN  157 (294)
Q Consensus       150 ~L~l~~c~  157 (294)
                      +|++++++
T Consensus       183 ~L~l~~N~  190 (251)
T 3m19_A          183 TITLFGNQ  190 (251)
T ss_dssp             EEECCSCC
T ss_pred             EEEeeCCc
Confidence            99998875

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.82  E-value=7.6e-09  Score=85.16  Aligned_cols=121  Identities=13%  Similarity=0.067  Sum_probs=62.4

Q ss_pred             CCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccCCcccc----cccCCcccE
Q 036679           10 SSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARV----SICGPNVRL   82 (294)
Q Consensus        10 ~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~~l~~~----~~~~~~L~~   82 (294)
                      ++|++|+|++|.++.. .+..+..+++|++|+++++. +..+.   +.++++|+.|+++++. +..+    ....++|+.
T Consensus        40 ~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~  116 (229)
T 3e6j_A           40 TNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKE  116 (229)
T ss_dssp             TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred             CCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCc-CCccChhHhCcchhhCe
Confidence            6677777777766431 12235566777777776664 33222   2345666666666653 2111    113455666


Q ss_pred             EEeeCCCCC-cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecc
Q 036679           83 VDISSLHAP-CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFR  134 (294)
Q Consensus        83 L~l~~c~~~-~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~  134 (294)
                      |+++++.+. .+..+..+++|++|+++++.++.- ....+..+++|+.|++.+
T Consensus       117 L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~  168 (229)
T 3e6j_A          117 LFMCCNKLTELPRGIERLTHLTHLALDQNQLKSI-PHGAFDRLSSLTHAYLFG  168 (229)
T ss_dssp             EECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECTT
T ss_pred             EeccCCcccccCcccccCCCCCEEECCCCcCCcc-CHHHHhCCCCCCEEEeeC
Confidence            666655522 122344555666666666554431 112344455566665554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.81  E-value=7e-09  Score=84.88  Aligned_cols=118  Identities=19%  Similarity=0.147  Sum_probs=58.2

Q ss_pred             CCCEEEEEcCCCCCeec----cCCCCCccEEEccccCCcccc----cccCCcccEEEeeCCCCCc--ccccccccccceE
Q 036679           36 LIERLKIIDCRGLKSLE----FLNLGKLSKFMVRNEDRLARV----SICGPNVRLVDISSLHAPC--GINVALCKNLKEL  105 (294)
Q Consensus        36 ~Le~L~L~~c~~l~~l~----~~~l~~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~c~~~~--~~~~~~~~~L~~L  105 (294)
                      .+++|+++++. +..+.    +.++++|++|+++++. +..+    ....++|+.|+++++.+..  +..+..+++|++|
T Consensus        33 ~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  110 (220)
T 2v70_A           33 YTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL  110 (220)
T ss_dssp             TCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred             CCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence            45566665553 33221    2345566666666553 1111    1134566666666665321  1234556666666


Q ss_pred             EecccccChHHHHHHhcCCCCCcEEeecccccceeeccc----ccccceEEeeccc
Q 036679          106 KLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYLKKLLVRFCN  157 (294)
Q Consensus       106 ~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~~L~l~~c~  157 (294)
                      +++++.+++. .+..+..+++|+.|+++++. ++.+...    .++|++|++++++
T Consensus       111 ~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          111 MLRSNRITCV-GNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             ECTTSCCCCB-CTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             ECCCCcCCeE-CHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcC
Confidence            6666665432 12334456666666666632 3333111    1466666666543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.80  E-value=5.1e-09  Score=98.37  Aligned_cols=123  Identities=19%  Similarity=0.198  Sum_probs=81.7

Q ss_pred             CCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccCCcccc----cccCCcccE
Q 036679           10 SSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARV----SICGPNVRL   82 (294)
Q Consensus        10 ~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~~l~~~----~~~~~~L~~   82 (294)
                      +++++|+|++|.++. ..+..+.++++|++|+|++| .++.+.   +.++++|++|+++++. +..+    ....++|++
T Consensus        52 ~~~~~LdLs~N~i~~-l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~  128 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQK  128 (635)
T ss_dssp             TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCE
T ss_pred             cCCCEEEeeCCCCCC-CCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCE
Confidence            478888888887753 11233677888888888887 355442   4567788888888774 2222    124577888


Q ss_pred             EEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeeccc
Q 036679           83 VDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRC  135 (294)
Q Consensus        83 L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c  135 (294)
                      |++++|....  +..++.+++|++|+++++.++...++..++.++.|+.|+++++
T Consensus       129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  183 (635)
T 4g8a_A          129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  183 (635)
T ss_dssp             EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence            8888876321  2346677888888888877654334455667788888887764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.80  E-value=1.9e-08  Score=88.15  Aligned_cols=173  Identities=19%  Similarity=0.141  Sum_probs=92.8

Q ss_pred             CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccCCccccc----
Q 036679            2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARVS----   74 (294)
Q Consensus         2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~~l~~~~----   74 (294)
                      +|.++  .+++++|+|++|.++. .....+.++++|++|+|+++.-++.+.   +.++++++++.+.++..+..+.    
T Consensus        24 iP~~l--~~~l~~L~Ls~N~i~~-i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f  100 (350)
T 4ay9_X           24 IPSDL--PRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF  100 (350)
T ss_dssp             CCTTC--CTTCSEEEEESCCCSE-ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB
T ss_pred             cCcCc--CCCCCEEEccCCcCCC-cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhh
Confidence            56554  4689999999998752 112346788999999999987555543   3456666665555444444331    


Q ss_pred             ccCCcccEEEeeCCCCCcc--cccccccccceEEeccc-ccChHHHHHHhcCC-CCCcEEeecccccceeecccc---cc
Q 036679           75 ICGPNVRLVDISSLHAPCG--INVALCKNLKELKLFKL-SITNEWLCNQFSEL-PFLEYLEIFRCMKIRSIKISS---PY  147 (294)
Q Consensus        75 ~~~~~L~~L~l~~c~~~~~--~~~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~-~~L~~L~l~~c~~l~~l~i~~---~~  147 (294)
                      ...++|+.|+++++.....  ..+....++..+++.++ .+..-. ...+... ..++.|+++++ .++.+....   .+
T Consensus       101 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~-~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~  178 (350)
T 4ay9_X          101 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE-RNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQ  178 (350)
T ss_dssp             CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC-TTSSTTSBSSCEEEECCSS-CCCEECTTSSTTEE
T ss_pred             hhccccccccccccccccCCchhhcccchhhhhhhcccccccccc-ccchhhcchhhhhhccccc-cccCCChhhccccc
Confidence            2457788888877763211  11222334455555442 222110 0111222 34555666552 344443221   45


Q ss_pred             cceEEeecccCceeeec----cCCCccEEEEcCcee
Q 036679          148 LKKLLVRFCNKLYEFKL----DTPNLSVFDYEGDMV  179 (294)
Q Consensus       148 L~~L~l~~c~~l~~~~~----~~p~L~~l~~~g~~~  179 (294)
                      |+.+.+.++..++.++-    ..++|+.|+++++.+
T Consensus       179 L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l  214 (350)
T 4ay9_X          179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI  214 (350)
T ss_dssp             EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC
T ss_pred             hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc
Confidence            66666655555555542    234566666665544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.79  E-value=1.9e-08  Score=93.64  Aligned_cols=167  Identities=16%  Similarity=0.049  Sum_probs=108.1

Q ss_pred             CccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCCcccccccCCcccEEEeeCCCC
Q 036679           11 SLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVSICGPNVRLVDISSLHA   90 (294)
Q Consensus        11 ~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~c~~   90 (294)
                      +|+.|+|+++.+++  ++.-  -+++|++|+++++. +..+. ..+++|++|+++++. +..+.....+|+.|++++|.+
T Consensus        60 ~L~~L~Ls~n~L~~--lp~~--l~~~L~~L~Ls~N~-l~~ip-~~l~~L~~L~Ls~N~-l~~ip~l~~~L~~L~Ls~N~l  132 (571)
T 3cvr_A           60 QFSELQLNRLNLSS--LPDN--LPPQITVLEITQNA-LISLP-ELPASLEYLDACDNR-LSTLPELPASLKHLDVDNNQL  132 (571)
T ss_dssp             TCSEEECCSSCCSC--CCSC--CCTTCSEEECCSSC-CSCCC-CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCC
T ss_pred             CccEEEeCCCCCCc--cCHh--HcCCCCEEECcCCC-Ccccc-cccCCCCEEEccCCC-CCCcchhhcCCCEEECCCCcC
Confidence            78899999988754  3221  24789999998874 55555 556889999998874 222222223899999988874


Q ss_pred             CcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccccccceEEeecccCceeeeccCCCc-
Q 036679           91 PCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISSPYLKKLLVRFCNKLYEFKLDTPNL-  169 (294)
Q Consensus        91 ~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~~~L~~L~l~~c~~l~~~~~~~p~L-  169 (294)
                      .....  .+++|+.|++++|.+++  ++.   .+++|+.|+++++. ++.++.-.++|++|+++++. ++.++.-.++| 
T Consensus       133 ~~lp~--~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~-L~~lp~l~~~L~~L~Ls~N~-L~~lp~~~~~L~  203 (571)
T 3cvr_A          133 TMLPE--LPALLEYINADNNQLTM--LPE---LPTSLEVLSVRNNQ-LTFLPELPESLEALDVSTNL-LESLPAVPVRNH  203 (571)
T ss_dssp             SCCCC--CCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSSCCCCC----
T ss_pred             CCCCC--cCccccEEeCCCCccCc--CCC---cCCCcCEEECCCCC-CCCcchhhCCCCEEECcCCC-CCchhhHHHhhh
Confidence            32111  57889999999888765  332   56889999998864 44443322789999998875 33443322266 


Q ss_pred             ------cEEEEcCceeee----ecCccccceEEE
Q 036679          170 ------SVFDYEGDMVSF----SSNALALSETSL  193 (294)
Q Consensus       170 ------~~l~~~g~~~~~----~~~~~~L~~~~i  193 (294)
                            +.|+++++.+..    +...++|+.+.+
T Consensus       204 ~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L  237 (571)
T 3cvr_A          204 HSEETEIFFRCRENRITHIPENILSLDPTCTIIL  237 (571)
T ss_dssp             ----CCEEEECCSSCCCCCCGGGGGSCTTEEEEC
T ss_pred             cccccceEEecCCCcceecCHHHhcCCCCCEEEe
Confidence                  888888876521    223556766666

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.79  E-value=1.4e-08  Score=89.06  Aligned_cols=189  Identities=16%  Similarity=0.104  Sum_probs=124.8

Q ss_pred             CCC-CCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccC--Ccccc-c
Q 036679            2 SPT-RNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNED--RLARV-S   74 (294)
Q Consensus         2 ~p~-~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~--~l~~~-~   74 (294)
                      +|. .+.++++|++|+|++|.+.+......+.++++++++...++..+..+.   +.++++|++|+++++.  .+... .
T Consensus        45 i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~  124 (350)
T 4ay9_X           45 IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK  124 (350)
T ss_dssp             ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT
T ss_pred             cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhh
Confidence            454 467899999999999987432222346788898888887777887764   4568999999999875  22221 2


Q ss_pred             ccCCcccEEEeeCCC-CC-c-ccccccc-cccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccc----c
Q 036679           75 ICGPNVRLVDISSLH-AP-C-GINVALC-KNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISS----P  146 (294)
Q Consensus        75 ~~~~~L~~L~l~~c~-~~-~-~~~~~~~-~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~----~  146 (294)
                      ....++..+++.++. .. . ...+... ..++.|+++++.++.  ++........|+.|++.+++.++.++...    +
T Consensus       125 ~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~--i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~  202 (350)
T 4ay9_X          125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE--IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS  202 (350)
T ss_dssp             CCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE--ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEE
T ss_pred             cccchhhhhhhccccccccccccchhhcchhhhhhccccccccC--CChhhccccchhHHhhccCCcccCCCHHHhccCc
Confidence            234567788887754 21 1 1223333 468889999998764  33333345789999999888888876432    7


Q ss_pred             ccceEEeecccCceeeecc-CCCccEEEEcCcee-e---eecCccccceEEE
Q 036679          147 YLKKLLVRFCNKLYEFKLD-TPNLSVFDYEGDMV-S---FSSNALALSETSL  193 (294)
Q Consensus       147 ~L~~L~l~~c~~l~~~~~~-~p~L~~l~~~g~~~-~---~~~~~~~L~~~~i  193 (294)
                      +|+.|+++++. ++.++.. ..+|+.|+..+... .   .+...++|+.+.+
T Consensus       203 ~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l  253 (350)
T 4ay9_X          203 GPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASL  253 (350)
T ss_dssp             CCSEEECTTSC-CCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEEC
T ss_pred             ccchhhcCCCC-cCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcC
Confidence            89999999885 5566543 45788887765532 1   1223345555544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.79  E-value=1.1e-08  Score=83.61  Aligned_cols=56  Identities=14%  Similarity=0.052  Sum_probs=24.6

Q ss_pred             CcccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecc
Q 036679           78 PNVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFR  134 (294)
Q Consensus        78 ~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~  134 (294)
                      ++|+.|+++++.+..  +..+.++++|++|+++++.+++. ....+..+++|+.|++++
T Consensus        80 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~  137 (220)
T 2v9t_B           80 RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCL-RVDAFQDLHNLNLLSLYD  137 (220)
T ss_dssp             SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCS
T ss_pred             cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEe-CHHHcCCCCCCCEEECCC
Confidence            445555555444211  11234445555555555544431 112234455555555554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.79  E-value=7.8e-09  Score=81.44  Aligned_cols=127  Identities=19%  Similarity=0.239  Sum_probs=80.5

Q ss_pred             CCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccCCcccc----cccCCcc
Q 036679            6 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNEDRLARV----SICGPNV   80 (294)
Q Consensus         6 ~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~~l~~~----~~~~~~L   80 (294)
                      ...+++|+.|++++|.++.  ++.+....++|+.|+++++. +..+ .+.++++|++|+++++. +..+    ...+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCC-CCcccccccCCCCCEEECCCCc-ccccCcchhhcCCCC
Confidence            3457889999999988753  23344445589999998874 4433 34566788888888774 2222    1245777


Q ss_pred             cEEEeeCCCCCc-cc--ccccccccceEEecccccChH--HHHHHhcCCCCCcEEeecccc
Q 036679           81 RLVDISSLHAPC-GI--NVALCKNLKELKLFKLSITNE--WLCNQFSELPFLEYLEIFRCM  136 (294)
Q Consensus        81 ~~L~l~~c~~~~-~~--~~~~~~~L~~L~L~~~~i~~~--~l~~l~~~~~~L~~L~l~~c~  136 (294)
                      +.|++++|.+.. +.  .+..+++|+.|+++++.+++.  .-...+..+++|+.|+++++.
T Consensus        91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            778777776421 21  455677777777777766531  112245667777777776654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.70  E-value=2.4e-08  Score=93.72  Aligned_cols=237  Identities=13%  Similarity=0.063  Sum_probs=124.7

Q ss_pred             CCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCC---------------------CCCeeccCCCCCccEEEc
Q 036679            6 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCR---------------------GLKSLEFLNLGKLSKFMV   64 (294)
Q Consensus         6 ~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~---------------------~l~~l~~~~l~~L~~L~l   64 (294)
                      ...+.+++.+.+.++.+..  +. -+..++.++.|++.++.                     .-.......+++|+.+++
T Consensus       302 ~~~~~~l~~l~~~~~~~~~--~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~l  378 (635)
T 4g8a_A          302 FNCLTNVSSFSLVSVTIER--VK-DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL  378 (635)
T ss_dssp             TGGGTTCSEEEEESCEEEE--CG-GGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEEC
T ss_pred             hhhhccccccccccccccc--cc-ccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchh
Confidence            3445667777776665422  11 13455667777776653                     111111123456666666


Q ss_pred             cccCCc--cc---ccccCCcccEEEeeCCCCC-cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccc
Q 036679           65 RNEDRL--AR---VSICGPNVRLVDISSLHAP-CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKI  138 (294)
Q Consensus        65 ~~c~~l--~~---~~~~~~~L~~L~l~~c~~~-~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l  138 (294)
                      +.+...  ..   ......+|+.+++..+... ....+..+++|+.+++..+......-...+..++.++.++++++. +
T Consensus       379 s~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~-l  457 (635)
T 4g8a_A          379 SRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-T  457 (635)
T ss_dssp             CSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSC-C
T ss_pred             hccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccc-c
Confidence            554310  00   0113445666666555411 112344566777777766653322112234566777777777643 2


Q ss_pred             eeeccc----ccccceEEeecccCceeee----ccCCCccEEEEcCceee-----eecCccccceEEEEEEEeccChhHH
Q 036679          139 RSIKIS----SPYLKKLLVRFCNKLYEFK----LDTPNLSVFDYEGDMVS-----FSSNALALSETSLCLDSINVDNQWL  205 (294)
Q Consensus       139 ~~l~i~----~~~L~~L~l~~c~~l~~~~----~~~p~L~~l~~~g~~~~-----~~~~~~~L~~~~i~~~~~~~~~~~~  205 (294)
                      ..+...    .++|+.|+++++.....+.    ...++|+.|+++++...     .+.+.++|+.+.+.-..+....   
T Consensus       458 ~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~---  534 (635)
T 4g8a_A          458 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD---  534 (635)
T ss_dssp             EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCC---
T ss_pred             ccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCC---
Confidence            222111    1578888888776443221    34577888888877551     2345567777766322111111   


Q ss_pred             HHHHHHHhcCcccceeEEEeeeeeeecchhhhhccCCCC-CCCceEEEEEccc
Q 036679          206 VKFIELLAKLNHCSNVLNLECYAAAIIPRELREILSSPL-TYENHVCFIINSE  257 (294)
Q Consensus       206 ~~~~~~l~~l~~l~~LL~~~~~~~~~~p~~~~~~~~~~f-~~Lk~L~L~~~~~  257 (294)
                         ...++.+++|+. |+++.+....++++.    ...+ .+|++|.|..|.+
T Consensus       535 ---~~~~~~l~~L~~-L~Ls~N~l~~~~~~~----l~~l~~~L~~L~L~~Np~  579 (635)
T 4g8a_A          535 ---TFPYKCLNSLQV-LDYSLNHIMTSKKQE----LQHFPSSLAFLNLTQNDF  579 (635)
T ss_dssp             ---CGGGTTCTTCCE-EECTTSCCCBCCSSC----TTCCCTTCCEEECTTCCB
T ss_pred             ---hhHHhCCCCCCE-EECCCCcCCCCCHHH----HHhhhCcCCEEEeeCCCC
Confidence               122456777777 588877666655431    3334 6899999987633

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.70  E-value=1.5e-08  Score=79.30  Aligned_cols=84  Identities=15%  Similarity=0.093  Sum_probs=55.3

Q ss_pred             CcccEEEeeCCCCCcc--cccccccccceEEeccc-ccChHHHHHHhcC---CCCCcEEeecccccceeecc----cccc
Q 036679           78 PNVRLVDISSLHAPCG--INVALCKNLKELKLFKL-SITNEWLCNQFSE---LPFLEYLEIFRCMKIRSIKI----SSPY  147 (294)
Q Consensus        78 ~~L~~L~l~~c~~~~~--~~~~~~~~L~~L~L~~~-~i~~~~l~~l~~~---~~~L~~L~l~~c~~l~~l~i----~~~~  147 (294)
                      ..|+.|++++|.+...  ..+.+|++|++|+|++| .++|.++..+...   |++|+.|++++|.++++-.+    ..++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            4577777777763221  22457778888888887 4777777766542   56788888888877665322    2367


Q ss_pred             cceEEeecccCcee
Q 036679          148 LKKLLVRFCNKLYE  161 (294)
Q Consensus       148 L~~L~l~~c~~l~~  161 (294)
                      |++|++++|+.+++
T Consensus       141 L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          141 LKYLFLSDLPGVKE  154 (176)
T ss_dssp             CCEEEEESCTTCCC
T ss_pred             CCEEECCCCCCCCc
Confidence            78888888777664

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.68  E-value=2.2e-08  Score=88.18  Aligned_cols=142  Identities=14%  Similarity=0.107  Sum_probs=86.5

Q ss_pred             CCccEEEeeecccChHHHHHHHh-cCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccCCcccc----cccCCccc
Q 036679           10 SSLRELGLFKCAANDEAIRDIVA-GCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARV----SICGPNVR   81 (294)
Q Consensus        10 ~~Lk~L~L~~~~~~~~~l~~~~~-~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~~l~~~----~~~~~~L~   81 (294)
                      +.++.|+|++|.++.-. ...+. .+++|++|+++++. +..+.   +.++++|++|+++++. +..+    ....++|+
T Consensus        39 ~~l~~L~Ls~N~l~~l~-~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~  115 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLR-AEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALE  115 (361)
T ss_dssp             TTCSEEECCSSCCCEEC-TTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCC
T ss_pred             CCCCEEECCCCCCCccC-hhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCC
Confidence            45788888888775411 12233 77888888888763 44432   4567788888888775 2222    12457788


Q ss_pred             EEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHh---cCCCCCcEEeecccccceeecccc----cc--cce
Q 036679           82 LVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQF---SELPFLEYLEIFRCMKIRSIKISS----PY--LKK  150 (294)
Q Consensus        82 ~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~---~~~~~L~~L~l~~c~~l~~l~i~~----~~--L~~  150 (294)
                      .|++++|.+..  +..+..+++|+.|+|+++.++.-. ...+   ..+++|+.|+++++ .++.++...    +.  ++.
T Consensus       116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~  193 (361)
T 2xot_A          116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP-VELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNG  193 (361)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC-GGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTT
T ss_pred             EEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC-HHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcce
Confidence            88888876432  234667788888888888766411 1122   45788888888874 355443221    22  466


Q ss_pred             EEeecc
Q 036679          151 LLVRFC  156 (294)
Q Consensus       151 L~l~~c  156 (294)
                      |++.++
T Consensus       194 l~l~~N  199 (361)
T 2xot_A          194 LYLHNN  199 (361)
T ss_dssp             EECCSS
T ss_pred             EEecCC
Confidence            777654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.64  E-value=6.6e-08  Score=90.05  Aligned_cols=51  Identities=24%  Similarity=0.186  Sum_probs=21.5

Q ss_pred             ccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccccccceEEeeccc
Q 036679          101 NLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISSPYLKKLLVRFCN  157 (294)
Q Consensus       101 ~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~~~L~~L~l~~c~  157 (294)
                      +|++|++++|.+++  ++.   .+++|+.|+++++. ++.++...++|++|++++|.
T Consensus       121 ~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~  171 (571)
T 3cvr_A          121 SLKHLDVDNNQLTM--LPE---LPALLEYINADNNQ-LTMLPELPTSLEVLSVRNNQ  171 (571)
T ss_dssp             TCCEEECCSSCCSC--CCC---CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC
T ss_pred             CCCEEECCCCcCCC--CCC---cCccccEEeCCCCc-cCcCCCcCCCcCEEECCCCC
Confidence            45555555544433  221   34455555554432 22222222345555554443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.60  E-value=8.5e-08  Score=73.13  Aligned_cols=103  Identities=18%  Similarity=0.202  Sum_probs=69.5

Q ss_pred             cCCCCCEEEEEcCCCC-Ceec--cCCCCCccEEEccccCCcccc--cccCCcccEEEeeCCCCCc--ccccccccccceE
Q 036679           33 GCPLIERLKIIDCRGL-KSLE--FLNLGKLSKFMVRNEDRLARV--SICGPNVRLVDISSLHAPC--GINVALCKNLKEL  105 (294)
Q Consensus        33 ~~~~Le~L~L~~c~~l-~~l~--~~~l~~L~~L~l~~c~~l~~~--~~~~~~L~~L~l~~c~~~~--~~~~~~~~~L~~L  105 (294)
                      ..++|++|++++|.-- ..+.  +..+++|++|++++|. +..+  ....++|+.|++++|....  +..+..+++|++|
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            3467999999988521 1222  3567888999988875 2222  2246788888888887432  2334457888888


Q ss_pred             EecccccChHHHHHHhcCCCCCcEEeecccc
Q 036679          106 KLFKLSITNEWLCNQFSELPFLEYLEIFRCM  136 (294)
Q Consensus       106 ~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~  136 (294)
                      +++++.+++......+..+++|+.|+++++.
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~  124 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCE  124 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence            8888887764333557778888888888764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.60  E-value=3.6e-08  Score=79.65  Aligned_cols=122  Identities=15%  Similarity=0.066  Sum_probs=89.5

Q ss_pred             CCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccC--Ccccc-cccCC
Q 036679            5 RNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNED--RLARV-SICGP   78 (294)
Q Consensus         5 ~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~--~l~~~-~~~~~   78 (294)
                      .+..+++|++|++++|.++. .....+..+++|++|+++++. +..+.   +.++++|++|+++++.  .+..- ....+
T Consensus        47 ~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  124 (208)
T 2o6s_A           47 VFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLT  124 (208)
T ss_dssp             TTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             hhcccccCcEEECCCCccCc-cChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCC
Confidence            35689999999999998853 223346789999999999984 33332   4567899999999885  22211 22468


Q ss_pred             cccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccc
Q 036679           79 NVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCM  136 (294)
Q Consensus        79 ~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~  136 (294)
                      +|+.|+++++.+..  +..+..+++|++|+++++.+.        ..|+.|+.|+++.+.
T Consensus       125 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~L~~~~n~  176 (208)
T 2o6s_A          125 QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWINK  176 (208)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--------CCTTTTHHHHHHHHH
T ss_pred             cCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--------cCCCCHHHHHHHHHh
Confidence            99999999997432  233677899999999998654        357888888877643

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.59  E-value=3.8e-08  Score=77.07  Aligned_cols=42  Identities=14%  Similarity=0.224  Sum_probs=30.5

Q ss_pred             ccccceEEeccc-ccChHHHHHHhcCCCCCcEEeecccccceee
Q 036679           99 CKNLKELKLFKL-SITNEWLCNQFSELPFLEYLEIFRCMKIRSI  141 (294)
Q Consensus        99 ~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l  141 (294)
                      +++|++|++++| .++|.++..+ .+|++|+.|++++|+.++..
T Consensus       113 ~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          113 QKSMLEMEIISCGNVTDKGIIAL-HHFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             HHHCCEEEEESCTTCCHHHHHHG-GGCTTCCEEEEESCTTCCCH
T ss_pred             cCCCCEEEcCCCCcCCHHHHHHH-hcCCCCCEEECCCCCCCCch
Confidence            456777777776 4777777664 46788888888888877653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.58  E-value=1.1e-07  Score=83.70  Aligned_cols=126  Identities=16%  Similarity=0.080  Sum_probs=65.4

Q ss_pred             CCCCccEEEeeecccC--------hHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCC----ccccc-
Q 036679            8 TLSSLRELGLFKCAAN--------DEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDR----LARVS-   74 (294)
Q Consensus         8 ~l~~Lk~L~L~~~~~~--------~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~----l~~~~-   74 (294)
                      ++++|+.|.+.+....        ...+..++..+|+|++|+++++.+++.-.+. .++|++|++..|.-    +..+. 
T Consensus       137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~  215 (362)
T 2ra8_A          137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILG  215 (362)
T ss_dssp             HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHH
T ss_pred             hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHH
Confidence            4667777777554221        1135556677777777777766433221222 46777777765541    11111 


Q ss_pred             ccCCcccEEEeeCCC---C-C--c-----ccccccccccceEEecccccChHHHHHHh--cCCCCCcEEeecc
Q 036679           75 ICGPNVRLVDISSLH---A-P--C-----GINVALCKNLKELKLFKLSITNEWLCNQF--SELPFLEYLEIFR  134 (294)
Q Consensus        75 ~~~~~L~~L~l~~c~---~-~--~-----~~~~~~~~~L~~L~L~~~~i~~~~l~~l~--~~~~~L~~L~l~~  134 (294)
                      ...|+|+.|+++.+.   . .  .     ......+|+|+.|.+.++.+++.....+.  ..+|.|+.|+++.
T Consensus       216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~  288 (362)
T 2ra8_A          216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA  288 (362)
T ss_dssp             SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred             ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence            135677777764211   0 0  0     01112466777777777666554333222  2356677777754

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.55  E-value=7e-08  Score=75.16  Aligned_cols=109  Identities=12%  Similarity=0.095  Sum_probs=81.2

Q ss_pred             CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec--cCCCCCccEEEccccC--Cccc--ccc
Q 036679            2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE--FLNLGKLSKFMVRNED--RLAR--VSI   75 (294)
Q Consensus         2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~--~~~l~~L~~L~l~~c~--~l~~--~~~   75 (294)
                      +|..+..+++|++|++++|.+++.   ..+..+++|++|++++|.--..+.  +..+++|++|++++|.  .+..  ...
T Consensus        41 i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~  117 (168)
T 2ell_A           41 IEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLK  117 (168)
T ss_dssp             CSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGS
T ss_pred             HHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHh
Confidence            566678899999999999988643   457889999999999986322121  2347899999999986  2221  123


Q ss_pred             cCCcccEEEeeCCCCCc-c----cccccccccceEEecccccC
Q 036679           76 CGPNVRLVDISSLHAPC-G----INVALCKNLKELKLFKLSIT  113 (294)
Q Consensus        76 ~~~~L~~L~l~~c~~~~-~----~~~~~~~~L~~L~L~~~~i~  113 (294)
                      .+++|+.|++++|.+.. +    ..+..+++|++|++.++.+.
T Consensus       118 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          118 KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            57899999999997322 2    24678899999999988654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.55  E-value=6.2e-09  Score=83.65  Aligned_cols=108  Identities=13%  Similarity=0.076  Sum_probs=66.0

Q ss_pred             HHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccC--CcccccccCCcccEEEeeCCCCCcccccccccccce
Q 036679           28 RDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNED--RLARVSICGPNVRLVDISSLHAPCGINVALCKNLKE  104 (294)
Q Consensus        28 ~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~L~~  104 (294)
                      +..+..+++|++|+++++. +..+ .+.++++|+.|++++|.  .+......+++|+.|++++|.+.....+..+++|++
T Consensus        41 ~~~~~~l~~L~~L~ls~n~-l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~  119 (198)
T 1ds9_A           41 DATLSTLKACKHLALSTNN-IEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRV  119 (198)
T ss_dssp             HHHHHHTTTCSEEECSEEE-ESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSE
T ss_pred             hHHHhcCCCCCEEECCCCC-CccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCE
Confidence            3356778888888887763 2222 33456778888887764  222212234677777777776432224556677778


Q ss_pred             EEecccccChHHHHHHhcCCCCCcEEeecccc
Q 036679          105 LKLFKLSITNEWLCNQFSELPFLEYLEIFRCM  136 (294)
Q Consensus       105 L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~  136 (294)
                      |+++++.+++-.....+..+++|+.|++++++
T Consensus       120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             EEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             EECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence            88777777653222345667777777777754

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.52  E-value=3.1e-08  Score=87.55  Aligned_cols=146  Identities=18%  Similarity=0.217  Sum_probs=102.2

Q ss_pred             CCCccEEEeeecccChHHHH---HHHh-cCCCCCEEEEEcCCCCCe--e-c-cCCCCCccEEEccccCCccc-----cc-
Q 036679            9 LSSLRELGLFKCAANDEAIR---DIVA-GCPLIERLKIIDCRGLKS--L-E-FLNLGKLSKFMVRNEDRLAR-----VS-   74 (294)
Q Consensus         9 l~~Lk~L~L~~~~~~~~~l~---~~~~-~~~~Le~L~L~~c~~l~~--l-~-~~~l~~L~~L~l~~c~~l~~-----~~-   74 (294)
                      .++|++|+|++|.+++....   ..+. .+++|++|++++|. +..  . . ...+++|++|++++|. +..     +. 
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~  148 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRD  148 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHH
Confidence            46899999999999874443   3333 34799999999985 321  1 0 1234689999999985 221     11 


Q ss_pred             ---ccCCcccEEEeeCCCCCcc------cccccccccceEEecccccChHHH---HHHhcCCCCCcEEeecccccceeec
Q 036679           75 ---ICGPNVRLVDISSLHAPCG------INVALCKNLKELKLFKLSITNEWL---CNQFSELPFLEYLEIFRCMKIRSIK  142 (294)
Q Consensus        75 ---~~~~~L~~L~l~~c~~~~~------~~~~~~~~L~~L~L~~~~i~~~~l---~~l~~~~~~L~~L~l~~c~~l~~l~  142 (294)
                         ...++|++|++++|.+...      ..+..+++|++|+|++|.+++.+.   ...+..++.|+.|++++|. ++...
T Consensus       149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g  227 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTA  227 (372)
T ss_dssp             HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHH
T ss_pred             HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHH
Confidence               1357899999999974321      123567899999999999887654   4456778899999999974 43321


Q ss_pred             ---c-----cccccceEEeeccc
Q 036679          143 ---I-----SSPYLKKLLVRFCN  157 (294)
Q Consensus       143 ---i-----~~~~L~~L~l~~c~  157 (294)
                         +     ..++|++|++++|.
T Consensus       228 ~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          228 ALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHHHHHHHHHCSSCCEEECTTSS
T ss_pred             HHHHHHHHHhCCCCCEEeccCCC
Confidence               1     12689999999986

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.49  E-value=3.2e-08  Score=87.47  Aligned_cols=167  Identities=10%  Similarity=0.056  Sum_probs=106.8

Q ss_pred             CCCccEEEeeecc--cChHHHHHHHhcCCCCCEEEEEcCCCCCe-----ec--c-CCCCCccEEEccccCC----ccccc
Q 036679            9 LSSLRELGLFKCA--ANDEAIRDIVAGCPLIERLKIIDCRGLKS-----LE--F-LNLGKLSKFMVRNEDR----LARVS   74 (294)
Q Consensus         9 l~~Lk~L~L~~~~--~~~~~l~~~~~~~~~Le~L~L~~c~~l~~-----l~--~-~~l~~L~~L~l~~c~~----l~~~~   74 (294)
                      ++..+.+++..|-  +.++.+..  ...+.|++|++++|. +..     +.  + ...++|++|++++|.-    +..+.
T Consensus        46 ~~~~~~lnl~~cl~e~~~~~l~~--~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~  122 (372)
T 3un9_A           46 LPPSELLDHLFFHYEFQNQRFSA--EVLSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLL  122 (372)
T ss_dssp             SCHHHHHHHHHHHHHHHTHHHHH--HHHTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTH
T ss_pred             CChhhhHHHHHHHHHhcCHHHHH--HHHhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHH
Confidence            3444555555552  22233332  234689999999986 221     11  1 2336899999999851    12222


Q ss_pred             ccCCcccEEEeeCCCCCcc--cc----c-ccccccceEEecccccChHHH---HHHhcCCCCCcEEeecccccceeec--
Q 036679           75 ICGPNVRLVDISSLHAPCG--IN----V-ALCKNLKELKLFKLSITNEWL---CNQFSELPFLEYLEIFRCMKIRSIK--  142 (294)
Q Consensus        75 ~~~~~L~~L~l~~c~~~~~--~~----~-~~~~~L~~L~L~~~~i~~~~l---~~l~~~~~~L~~L~l~~c~~l~~l~--  142 (294)
                      ...++|+.|++++|.+...  ..    + ...++|++|+|++|.+++.+.   ...+..+++|+.|++++|. ++...  
T Consensus       123 ~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~  201 (372)
T 3un9_A          123 PVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLE  201 (372)
T ss_dssp             HHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHH
T ss_pred             HHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHH
Confidence            2346899999999975422  11    1 245789999999999887543   4445778999999999875 43221  


Q ss_pred             -----c-cccccceEEeecccCce----eee---ccCCCccEEEEcCcee
Q 036679          143 -----I-SSPYLKKLLVRFCNKLY----EFK---LDTPNLSVFDYEGDMV  179 (294)
Q Consensus       143 -----i-~~~~L~~L~l~~c~~l~----~~~---~~~p~L~~l~~~g~~~  179 (294)
                           + ..++|+.|++++|..-.    .+.   ...++|++|+++++.+
T Consensus       202 ~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          202 LLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             HHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred             HHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence                 1 12589999999986321    111   2468999999998865

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.44  E-value=4.3e-07  Score=74.54  Aligned_cols=109  Identities=16%  Similarity=0.067  Sum_probs=81.6

Q ss_pred             CCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccC--CcccccccC
Q 036679            3 PTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNED--RLARVSICG   77 (294)
Q Consensus         3 p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~--~l~~~~~~~   77 (294)
                      |..+..+++|++|+|++|.+.. .....+..+++|+.|+++++. +..+.   +..+++|++|+++++.  .+.......
T Consensus        57 ~~~~~~l~~L~~L~L~~N~l~~-i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l  134 (229)
T 3e6j_A           57 PGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERL  134 (229)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGC
T ss_pred             HHHhhCccCCcEEECCCCCCCC-cChhhcccCCCcCEEECCCCc-CCccChhHhCcchhhCeEeccCCcccccCcccccC
Confidence            5567789999999999998843 122346789999999999984 44432   4568999999999885  222112356


Q ss_pred             CcccEEEeeCCCCCc--ccccccccccceEEecccccC
Q 036679           78 PNVRLVDISSLHAPC--GINVALCKNLKELKLFKLSIT  113 (294)
Q Consensus        78 ~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~  113 (294)
                      ++|+.|+++++.+..  ...+..+++|+.|++.++.+.
T Consensus       135 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          135 THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            899999999997432  234678899999999999765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.42  E-value=4.6e-07  Score=73.92  Aligned_cols=98  Identities=15%  Similarity=0.090  Sum_probs=47.0

Q ss_pred             CcccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc----ccccceE
Q 036679           78 PNVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYLKKL  151 (294)
Q Consensus        78 ~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~~L  151 (294)
                      ++|+.|+++++.+..  +..+.++++|++|+++++.++.- ....+.++++|+.|+++++. ++.+...    .++|++|
T Consensus        56 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L  133 (220)
T 2v9t_B           56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL-PKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLL  133 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc-CHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEE
Confidence            455555555554221  12345556666666666655431 11234455666666666532 3333211    1456666


Q ss_pred             EeecccCceeee----ccCCCccEEEEcCce
Q 036679          152 LVRFCNKLYEFK----LDTPNLSVFDYEGDM  178 (294)
Q Consensus       152 ~l~~c~~l~~~~----~~~p~L~~l~~~g~~  178 (294)
                      +++++.. +.++    ...++|+.+++.+++
T Consensus       134 ~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          134 SLYDNKL-QTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             ECCSSCC-SCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ECCCCcC-CEECHHHHhCCCCCCEEEeCCCC
Confidence            6666542 2222    124455566655554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.35  E-value=3.9e-07  Score=84.98  Aligned_cols=101  Identities=15%  Similarity=0.065  Sum_probs=71.1

Q ss_pred             CCCCEEEEEcCCCCCee-ccCCCCCccEEEccccC--CcccccccCCcccEEEeeCCCCCcccccccccccceEEecccc
Q 036679           35 PLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNED--RLARVSICGPNVRLVDISSLHAPCGINVALCKNLKELKLFKLS  111 (294)
Q Consensus        35 ~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~L~~L~L~~~~  111 (294)
                      ..|+.|+++++. +..+ .+.++++|+.|+++++.  .+.......++|+.|++++|.+.....++.+++|++|++++|.
T Consensus       441 ~~L~~L~Ls~n~-l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~  519 (567)
T 1dce_A          441 ADVRVLHLAHKD-LTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNR  519 (567)
T ss_dssp             TTCSEEECTTSC-CSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC
T ss_pred             cCceEEEecCCC-CCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCC
Confidence            368888888874 3322 25567889999998875  2222223568899999998874322267788899999999988


Q ss_pred             cChHHHHHHhcCCCCCcEEeecccc
Q 036679          112 ITNEWLCNQFSELPFLEYLEIFRCM  136 (294)
Q Consensus       112 i~~~~l~~l~~~~~~L~~L~l~~c~  136 (294)
                      +++...+..+..+++|+.|++++++
T Consensus       520 l~~~~~p~~l~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          520 LQQSAAIQPLVSCPRLVLLNLQGNS  544 (567)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             CCCCCCcHHHhcCCCCCEEEecCCc
Confidence            7763215567788999999998854

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.35  E-value=5.6e-07  Score=70.63  Aligned_cols=103  Identities=14%  Similarity=0.092  Sum_probs=59.1

Q ss_pred             hcCCCCCEEEEEcCCCCCeec-cCCC-CCccEEEccccCCcccc--cccCCcccEEEeeCCCCCc-c-cccccccccceE
Q 036679           32 AGCPLIERLKIIDCRGLKSLE-FLNL-GKLSKFMVRNEDRLARV--SICGPNVRLVDISSLHAPC-G-INVALCKNLKEL  105 (294)
Q Consensus        32 ~~~~~Le~L~L~~c~~l~~l~-~~~l-~~L~~L~l~~c~~l~~~--~~~~~~L~~L~l~~c~~~~-~-~~~~~~~~L~~L  105 (294)
                      ..+++|++|++++|. +..+. +..+ ++|+.|+++++. +..+  ....++|+.|++++|.+.. + ..+..+++|++|
T Consensus        16 ~~~~~L~~L~l~~n~-l~~i~~~~~~~~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           16 TNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             ECTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CCcCCceEEEeeCCC-CchhHHhhhcCCCCCEEECCCCC-CCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            356778888888774 32221 2222 377778777764 2222  1235677777777776331 1 123566777777


Q ss_pred             EecccccChHHHHHHhcCCCCCcEEeecccc
Q 036679          106 KLFKLSITNEWLCNQFSELPFLEYLEIFRCM  136 (294)
Q Consensus       106 ~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~  136 (294)
                      +++++.+++-.-...+..+++|+.|++++++
T Consensus        94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~  124 (176)
T 1a9n_A           94 ILTNNSLVELGDLDPLASLKSLTYLCILRNP  124 (176)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred             ECCCCcCCcchhhHhhhcCCCCCEEEecCCC
Confidence            7777766541111135567777777777654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.34  E-value=5.9e-07  Score=73.27  Aligned_cols=131  Identities=13%  Similarity=0.162  Sum_probs=96.7

Q ss_pred             CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccC--Cccc-ccc
Q 036679            2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNED--RLAR-VSI   75 (294)
Q Consensus         2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~--~l~~-~~~   75 (294)
                      +|..+  .+.+++|+|++|.++.......+..+++|++|+++++. +..+   .+.++++|++|+++++.  .+.. ...
T Consensus        26 iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  102 (220)
T 2v70_A           26 IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFK  102 (220)
T ss_dssp             CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGT
T ss_pred             CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCccCccCHhHhc
Confidence            45433  45689999999988643223346889999999999885 4444   25678999999999886  2222 122


Q ss_pred             cCCcccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccc
Q 036679           76 CGPNVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCM  136 (294)
Q Consensus        76 ~~~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~  136 (294)
                      ..++|++|+++++.+..  +..+..+++|++|+++++.+++. .+..+..+++|+.|++++.+
T Consensus       103 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          103 GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV-APGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB-CTTTTTTCTTCCEEECCSCC
T ss_pred             CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE-CHHHhcCCCCCCEEEecCcC
Confidence            57899999999998432  34567889999999999987753 24557789999999999854

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.34  E-value=5.3e-07  Score=71.91  Aligned_cols=98  Identities=16%  Similarity=0.167  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCCCCCeec----cCCCCCccEEEccccC--Cccc-ccccCCcccEEEeeCCCCCc--ccccccccccceEE
Q 036679           36 LIERLKIIDCRGLKSLE----FLNLGKLSKFMVRNED--RLAR-VSICGPNVRLVDISSLHAPC--GINVALCKNLKELK  106 (294)
Q Consensus        36 ~Le~L~L~~c~~l~~l~----~~~l~~L~~L~l~~c~--~l~~-~~~~~~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~  106 (294)
                      ++++|+++++. +..+.    +..+++|++|+++++.  .+.. .....++|+.|+++++.+..  +..+..+++|++|+
T Consensus        30 ~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  108 (192)
T 1w8a_A           30 HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence            56666665553 22211    2345566666666553  1111 11134566666666665321  12245566677777


Q ss_pred             ecccccChHHHHHHhcCCCCCcEEeeccc
Q 036679          107 LFKLSITNEWLCNQFSELPFLEYLEIFRC  135 (294)
Q Consensus       107 L~~~~i~~~~l~~l~~~~~~L~~L~l~~c  135 (294)
                      ++++.+++. .+..+..+++|+.|++++.
T Consensus       109 L~~N~l~~~-~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A          109 LYDNQISCV-MPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CCSSCCCEE-CTTSSTTCTTCCEEECTTC
T ss_pred             CCCCcCCee-CHHHhhcCCCCCEEEeCCC
Confidence            777665542 2333455667777776664

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.32  E-value=9.2e-09  Score=82.62  Aligned_cols=122  Identities=20%  Similarity=0.205  Sum_probs=89.2

Q ss_pred             CCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec--cCCCCCccEEEccccCCcccc--cccCCcc
Q 036679            5 RNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE--FLNLGKLSKFMVRNEDRLARV--SICGPNV   80 (294)
Q Consensus         5 ~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~--~~~l~~L~~L~l~~c~~l~~~--~~~~~~L   80 (294)
                      .+..+++|++|+|++|.+++  ++ .+..+++|+.|++++|. +..+.  +..+++|++|++++|. +..+  ...+++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-l~~l~~~~~l~~L  117 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLSGIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE-CCCHHHHHHHHHS
T ss_pred             HHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc-CCcCCccccCCCC
Confidence            56678999999999998865  33 56788999999999984 32222  2234789999999885 2222  1245789


Q ss_pred             cEEEeeCCCCCc-c--cccccccccceEEecccccChH---------HHHHHhcCCCCCcEEe
Q 036679           81 RLVDISSLHAPC-G--INVALCKNLKELKLFKLSITNE---------WLCNQFSELPFLEYLE  131 (294)
Q Consensus        81 ~~L~l~~c~~~~-~--~~~~~~~~L~~L~L~~~~i~~~---------~l~~l~~~~~~L~~L~  131 (294)
                      +.|++++|.+.. +  ..+..+++|++|+++++.+++.         .....+..+++|+.|+
T Consensus       118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            999999987542 2  2467889999999999987543         1233467789999987

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.28  E-value=1.5e-06  Score=69.44  Aligned_cols=57  Identities=21%  Similarity=0.117  Sum_probs=28.0

Q ss_pred             CCcccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecc
Q 036679           77 GPNVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFR  134 (294)
Q Consensus        77 ~~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~  134 (294)
                      .++|+.|+++++.+..  +..+..+++|++|+++++.++.- ....+..+++|+.|++++
T Consensus        77 l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~  135 (193)
T 2wfh_A           77 MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV-PEGAFNDLSALSHLAIGA  135 (193)
T ss_dssp             CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEEECCS
T ss_pred             CCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCee-ChhhhhcCccccEEEeCC
Confidence            3455555555554221  12344556666666666655431 112344556666666655

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.28  E-value=7.8e-07  Score=78.14  Aligned_cols=124  Identities=18%  Similarity=0.151  Sum_probs=87.9

Q ss_pred             CCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccCCcccc----cccCCcc
Q 036679            8 TLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARV----SICGPNV   80 (294)
Q Consensus         8 ~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~~l~~~----~~~~~~L   80 (294)
                      .+++|++|+|++|.++.- ....+..+++|++|+++++. +..+.   +.++++|++|+++++. +..+    ....++|
T Consensus        62 ~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L  138 (361)
T 2xot_A           62 RLTNLHSLLLSHNHLNFI-SSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQL  138 (361)
T ss_dssp             CCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTC
T ss_pred             cccccCEEECCCCcCCcc-ChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccC
Confidence            799999999999988641 12346789999999999985 55542   4578999999999886 2222    2246899


Q ss_pred             cEEEeeCCCCCc-cc-cc---ccccccceEEecccccChHHHHHHhcCCCC--CcEEeeccc
Q 036679           81 RLVDISSLHAPC-GI-NV---ALCKNLKELKLFKLSITNEWLCNQFSELPF--LEYLEIFRC  135 (294)
Q Consensus        81 ~~L~l~~c~~~~-~~-~~---~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~--L~~L~l~~c  135 (294)
                      +.|++++|.+.. +. .+   ..+++|+.|+|+++.++.-.. ..+..++.  ++.|++.+.
T Consensus       139 ~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          139 QKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL-TDLQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             CEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH-HHHHHSCHHHHTTEECCSS
T ss_pred             CEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH-HHhhhccHhhcceEEecCC
Confidence            999999997432 22 22   568999999999998775322 22344565  477888773

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.27  E-value=4e-06  Score=72.53  Aligned_cols=73  Identities=15%  Similarity=0.063  Sum_probs=47.5

Q ss_pred             HHHhcCCCCCcEEeecccccceeecccc----cccceEEeecccCceeee----ccCCCcc-EEEEcCcee----eeecC
Q 036679          118 CNQFSELPFLEYLEIFRCMKIRSIKISS----PYLKKLLVRFCNKLYEFK----LDTPNLS-VFDYEGDMV----SFSSN  184 (294)
Q Consensus       118 ~~l~~~~~~L~~L~l~~c~~l~~l~i~~----~~L~~L~l~~c~~l~~~~----~~~p~L~-~l~~~g~~~----~~~~~  184 (294)
                      ..+...|++|+.+++.++. ++.++-..    .+|+.+++.+.  ++.++    .++++|+ ++.+.....    ..+.+
T Consensus       219 ~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~  295 (329)
T 3sb4_A          219 KLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMG  295 (329)
T ss_dssp             HHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTT
T ss_pred             HHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcccceEEchhhhhC
Confidence            3333458888998888643 66655432    68888888663  55555    3567788 888865321    34567


Q ss_pred             ccccceEEE
Q 036679          185 ALALSETSL  193 (294)
Q Consensus       185 ~~~L~~~~i  193 (294)
                      +.+|+.+.+
T Consensus       296 c~~L~~l~l  304 (329)
T 3sb4_A          296 CDNLRYVLA  304 (329)
T ss_dssp             CTTEEEEEE
T ss_pred             CccCCEEEe
Confidence            778888876

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.22  E-value=2.8e-06  Score=66.56  Aligned_cols=118  Identities=15%  Similarity=0.089  Sum_probs=62.0

Q ss_pred             ccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccCCcccc----cccCCcccEEE
Q 036679           12 LRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARV----SICGPNVRLVD   84 (294)
Q Consensus        12 Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~~l~~~----~~~~~~L~~L~   84 (294)
                      .+.++++++.++.  ++  ....++|++|+++++. +..+.   +.++++|++|+++++. +..+    ....++|+.|+
T Consensus         9 ~~~l~~~~~~l~~--~p--~~~~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~   82 (177)
T 2o6r_A            9 GTEIRCNSKGLTS--VP--TGIPSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILY   82 (177)
T ss_dssp             TTEEECCSSCCSS--CC--TTCCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred             CCEEEecCCCCcc--CC--CCCCCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEE
Confidence            3555555554432  11  1123566666666653 22221   2345666666666653 1111    12356677777


Q ss_pred             eeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccc
Q 036679           85 ISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCM  136 (294)
Q Consensus        85 l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~  136 (294)
                      ++++.+..  +..+..+++|++|+++++.++.- ....+..+++|+.|++++++
T Consensus        83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           83 LHENKLQSLPNGVFDKLTQLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCccccCHHHhhCCcccCEEECcCCcceEe-CHHHhcCCcccCEEEecCCC
Confidence            77665321  12245667777777777766532 12234556777777777653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.21  E-value=4.4e-06  Score=72.26  Aligned_cols=89  Identities=17%  Similarity=0.158  Sum_probs=64.0

Q ss_pred             ccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccc----cccc-eEEeecccCceeee----ccCCCc
Q 036679           99 CKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISS----PYLK-KLLVRFCNKLYEFK----LDTPNL  169 (294)
Q Consensus        99 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~----~~L~-~L~l~~c~~l~~~~----~~~p~L  169 (294)
                      |++|+++++.++.++.- -...+.+|++|+.+++.+  +++.+.-..    ++|+ .+.+.+  .++.++    .++++|
T Consensus       225 ~~~L~~l~L~~n~i~~I-~~~aF~~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L  299 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTI-PDFTFAQKKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNL  299 (329)
T ss_dssp             CTTCCEEECTTBCCCEE-CTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTE
T ss_pred             cCCCeEEECCCCCccee-cHhhhhCCCCCCEEECCc--ccceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccC
Confidence            78999999998765531 123578899999999987  376665433    6798 999877  566665    357899


Q ss_pred             cEEEEcCcee-----eeecCccccceEE
Q 036679          170 SVFDYEGDMV-----SFSSNALALSETS  192 (294)
Q Consensus       170 ~~l~~~g~~~-----~~~~~~~~L~~~~  192 (294)
                      +++.+.+..+     ..+.++++|+.+.
T Consensus       300 ~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          300 RYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             CEEEeCCCccCccchhhhcCCcchhhhc
Confidence            9999876654     2455677777664

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.16  E-value=9.9e-07  Score=70.31  Aligned_cols=100  Identities=11%  Similarity=0.173  Sum_probs=40.2

Q ss_pred             CccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCCcccc----cccCCcccEE
Q 036679           11 SLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDRLARV----SICGPNVRLV   83 (294)
Q Consensus        11 ~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~l~~~----~~~~~~L~~L   83 (294)
                      +|++|++++|.++.-.....+..+++|++|+++++. +..+   .+.++++|++|+++++. +..+    ....++|+.|
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L  107 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEE
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCEE
Confidence            455555555544321111123444555555555442 2111   12334455555555443 1111    1123445555


Q ss_pred             EeeCCCCCc--ccccccccccceEEeccccc
Q 036679           84 DISSLHAPC--GINVALCKNLKELKLFKLSI  112 (294)
Q Consensus        84 ~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i  112 (294)
                      +++++.+..  +..+..+++|++|+++++.+
T Consensus       108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A          108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             ECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             ECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence            555544221  12233444555555555443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.15  E-value=1.4e-06  Score=83.64  Aligned_cols=56  Identities=16%  Similarity=0.125  Sum_probs=25.1

Q ss_pred             CCcccEEEeeCCCCC-cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecc
Q 036679           77 GPNVRLVDISSLHAP-CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFR  134 (294)
Q Consensus        77 ~~~L~~L~l~~c~~~-~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~  134 (294)
                      .++|+.|++++|.+. .+..+..+++|++|+|++|.++.  ++..+.++++|+.|+|++
T Consensus       246 l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~  302 (727)
T 4b8c_D          246 YDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS--LPAELGSCFQLKYFYFFD  302 (727)
T ss_dssp             CCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS--CCSSGGGGTTCSEEECCS
T ss_pred             CCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCc--cChhhcCCCCCCEEECCC
Confidence            344555555544422 12223444555555555554441  333344445555555554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.12  E-value=1.9e-06  Score=82.65  Aligned_cols=105  Identities=18%  Similarity=0.228  Sum_probs=63.8

Q ss_pred             HHHhcCCCCCEEEEEcCCCCCee--ccCCCCCccEEEccccC--CcccccccCCcccEEEeeCCCCC-cccccccccccc
Q 036679           29 DIVAGCPLIERLKIIDCRGLKSL--EFLNLGKLSKFMVRNED--RLARVSICGPNVRLVDISSLHAP-CGINVALCKNLK  103 (294)
Q Consensus        29 ~~~~~~~~Le~L~L~~c~~l~~l--~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~~c~~~-~~~~~~~~~~L~  103 (294)
                      ..+..++.|+.|+|+++. +..+  .+.++++|++|+++++.  .+......+++|+.|++++|.+. .+..++.+++|+
T Consensus       218 ~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~  296 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK  296 (727)
T ss_dssp             ----CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred             hhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence            345667778888877764 2222  13356777777777764  12111124567888888777633 234466777788


Q ss_pred             eEEecccccChHHHHHHhcCCCCCcEEeecccc
Q 036679          104 ELKLFKLSITNEWLCNQFSELPFLEYLEIFRCM  136 (294)
Q Consensus       104 ~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~  136 (294)
                      +|+|++|.++.  ++..+.++++|+.|+|+++.
T Consensus       297 ~L~L~~N~l~~--lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          297 YFYFFDNMVTT--LPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             EEECCSSCCCC--CCSSTTSCTTCCCEECTTSC
T ss_pred             EEECCCCCCCc--cChhhhcCCCccEEeCCCCc
Confidence            88888777653  44446677788888887754

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.09  E-value=8.6e-06  Score=64.48  Aligned_cols=111  Identities=12%  Similarity=0.119  Sum_probs=67.9

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCCCCe-----e--ccCCCCCccEEEccccCCccc-----c---cccCCcccEEEeeCCC
Q 036679           25 EAIRDIVAGCPLIERLKIIDCRGLKS-----L--EFLNLGKLSKFMVRNEDRLAR-----V---SICGPNVRLVDISSLH   89 (294)
Q Consensus        25 ~~l~~~~~~~~~Le~L~L~~c~~l~~-----l--~~~~l~~L~~L~l~~c~~l~~-----~---~~~~~~L~~L~l~~c~   89 (294)
                      +.+...+..++.|++|++++|..+..     +  .+...++|++|++++|. +.+     +   ....++|++|++++|.
T Consensus        26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~  104 (185)
T 1io0_A           26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF  104 (185)
T ss_dssp             HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence            55666777788888888877733321     1  12334677777777764 211     1   1134677778877776


Q ss_pred             CCcc------cccccccccceEEe--cccccChHH---HHHHhcCCCCCcEEeecccc
Q 036679           90 APCG------INVALCKNLKELKL--FKLSITNEW---LCNQFSELPFLEYLEIFRCM  136 (294)
Q Consensus        90 ~~~~------~~~~~~~~L~~L~L--~~~~i~~~~---l~~l~~~~~~L~~L~l~~c~  136 (294)
                      +...      ..+...++|++|++  .++.+++++   +...+..++.|+.|+++++.
T Consensus       105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            4321      22445567888888  677777754   34445566778888887653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.08  E-value=1.4e-05  Score=63.65  Aligned_cols=98  Identities=16%  Similarity=0.087  Sum_probs=43.0

Q ss_pred             cccEEEeeCCCCC-cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc----ccccceEEe
Q 036679           79 NVRLVDISSLHAP-CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYLKKLLV  153 (294)
Q Consensus        79 ~L~~L~l~~c~~~-~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~~L~l  153 (294)
                      +|+.|+++++.+. .+..+..+++|++|+++++.+++. ....+.++++|+.|+++++. ++.+...    .++|++|++
T Consensus        32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEEC
Confidence            4444444444321 112334445555555555544431 11223445555555555432 3333211    145555555


Q ss_pred             ecccCceeeec----cCCCccEEEEcCcee
Q 036679          154 RFCNKLYEFKL----DTPNLSVFDYEGDMV  179 (294)
Q Consensus       154 ~~c~~l~~~~~----~~p~L~~l~~~g~~~  179 (294)
                      +++. ++.++.    ..++|+.+++.+++.
T Consensus       110 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          110 HGND-ISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence            5543 222221    245666777666644

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.07  E-value=1.5e-05  Score=62.36  Aligned_cols=79  Identities=18%  Similarity=0.095  Sum_probs=33.4

Q ss_pred             ccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc----ccccceEEeecccCceeee----ccCCC
Q 036679           97 ALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYLKKLLVRFCNKLYEFK----LDTPN  168 (294)
Q Consensus        97 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~~L~l~~c~~l~~~~----~~~p~  168 (294)
                      ..+++|++|+++++.++.. ....+..+++|+.|+++++. ++.+...    .++|++|+++++. ++.++    ...++
T Consensus        49 ~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~  125 (177)
T 2o6r_A           49 DKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTS  125 (177)
T ss_dssp             TTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTT
T ss_pred             cCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcc
Confidence            3444555555555444321 11123344555555555432 2222211    1345555555443 22222    12455


Q ss_pred             ccEEEEcCce
Q 036679          169 LSVFDYEGDM  178 (294)
Q Consensus       169 L~~l~~~g~~  178 (294)
                      |+.+++.++.
T Consensus       126 L~~L~l~~N~  135 (177)
T 2o6r_A          126 LQKIWLHTNP  135 (177)
T ss_dssp             CCEEECCSSC
T ss_pred             cCEEEecCCC
Confidence            6666666553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.05  E-value=1.1e-05  Score=75.22  Aligned_cols=140  Identities=16%  Similarity=0.074  Sum_probs=93.7

Q ss_pred             HHHhcCCCCCEEE-EEcCC--CCCeec-----cCC--CCCccEEEccccC--CcccccccCCcccEEEeeCCCCC-cccc
Q 036679           29 DIVAGCPLIERLK-IIDCR--GLKSLE-----FLN--LGKLSKFMVRNED--RLARVSICGPNVRLVDISSLHAP-CGIN   95 (294)
Q Consensus        29 ~~~~~~~~Le~L~-L~~c~--~l~~l~-----~~~--l~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~~c~~~-~~~~   95 (294)
                      ..++.+++|+.|+ ++...  .+..+.     +..  ...|+.|+++++.  .+.. ...+++|+.|++++|.+. .+..
T Consensus       403 ~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~  481 (567)
T 1dce_A          403 ETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPA  481 (567)
T ss_dssp             HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGG
T ss_pred             HHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchh
Confidence            3456778888887 33321  111111     110  1368899999875  3333 234679999999999843 3456


Q ss_pred             cccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec--c--c-ccccceEEeecccCceeee------c
Q 036679           96 VALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK--I--S-SPYLKKLLVRFCNKLYEFK------L  164 (294)
Q Consensus        96 ~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~--i--~-~~~L~~L~l~~c~~l~~~~------~  164 (294)
                      ++.+++|+.|+++++.+++  ++ .++++++|+.|+++++. ++.+.  .  . .++|+.|+++++..-...+      -
T Consensus       482 ~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~  557 (567)
T 1dce_A          482 LAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE  557 (567)
T ss_dssp             GGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHH
T ss_pred             hhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHH
Confidence            7889999999999999886  45 57889999999999854 55542  1  1 2799999999987432211      2


Q ss_pred             cCCCccEEE
Q 036679          165 DTPNLSVFD  173 (294)
Q Consensus       165 ~~p~L~~l~  173 (294)
                      ..|+|+.|+
T Consensus       558 ~lp~L~~L~  566 (567)
T 1dce_A          558 MLPSVSSIL  566 (567)
T ss_dssp             HCTTCSEEE
T ss_pred             HCcccCccC
Confidence            367777764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.99  E-value=2.7e-05  Score=68.37  Aligned_cols=124  Identities=14%  Similarity=0.131  Sum_probs=81.7

Q ss_pred             CCCCccEEEeeecc-cChHHHHHHHhcCCCCCEEEEEcCCC----CCeeccCCCCCccEEEccccC-------Ccccc--
Q 036679            8 TLSSLRELGLFKCA-ANDEAIRDIVAGCPLIERLKIIDCRG----LKSLEFLNLGKLSKFMVRNED-------RLARV--   73 (294)
Q Consensus         8 ~l~~Lk~L~L~~~~-~~~~~l~~~~~~~~~Le~L~L~~c~~----l~~l~~~~l~~L~~L~l~~c~-------~l~~~--   73 (294)
                      .+|+|+.|+|+++. +.   +.. + ..++|++|++..|.-    +..+....+|+|++|+++.+.       .+..+  
T Consensus       170 ~~P~L~~L~L~g~~~l~---l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~  244 (362)
T 2ra8_A          170 AMPLLNNLKIKGTNNLS---IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP  244 (362)
T ss_dssp             TCTTCCEEEEECCBTCB---CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred             cCCCCcEEEEeCCCCce---ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence            46899999998873 21   111 2 378899999987641    112222357889999885321       12111  


Q ss_pred             -c--ccCCcccEEEeeCCCCCcc-----cccccccccceEEecccccChHHHHHHh---cCCCCCcEEeecccc
Q 036679           74 -S--ICGPNVRLVDISSLHAPCG-----INVALCKNLKELKLFKLSITNEWLCNQF---SELPFLEYLEIFRCM  136 (294)
Q Consensus        74 -~--~~~~~L~~L~l~~c~~~~~-----~~~~~~~~L~~L~L~~~~i~~~~l~~l~---~~~~~L~~L~l~~c~  136 (294)
                       .  ..+|+|+.|++.+|.....     .....+++|++|+|+.+.+++.+...+.   .++++|+.|++++|.
T Consensus       245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence             1  1368999999998874311     1123578999999999999887655543   457999999998874

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.79  E-value=0.00013  Score=64.88  Aligned_cols=120  Identities=13%  Similarity=0.177  Sum_probs=62.2

Q ss_pred             CCCCCccEEEccccC-CcccccccCCcccEEEeeCCCCCc-ccccccccccceEEecccccChH----HHHHHhcCCCCC
Q 036679           54 LNLGKLSKFMVRNED-RLARVSICGPNVRLVDISSLHAPC-GINVALCKNLKELKLFKLSITNE----WLCNQFSELPFL  127 (294)
Q Consensus        54 ~~l~~L~~L~l~~c~-~l~~~~~~~~~L~~L~l~~c~~~~-~~~~~~~~~L~~L~L~~~~i~~~----~l~~l~~~~~~L  127 (294)
                      .+|++|+.+++...- .+..-.+...+|+.+.+...-... ...+.+|++|+.+.+.++.+...    --...+.+|++|
T Consensus       223 ~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L  302 (401)
T 4fdw_A          223 LKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKL  302 (401)
T ss_dssp             TTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTC
T ss_pred             hCCCCCCEEecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccC
Confidence            345666666665421 111112223566776664432111 23456777888887766543200    011346677788


Q ss_pred             cEEeecccccceeecccc----cccceEEeecccCceeee----ccCCCccEEEEcCce
Q 036679          128 EYLEIFRCMKIRSIKISS----PYLKKLLVRFCNKLYEFK----LDTPNLSVFDYEGDM  178 (294)
Q Consensus       128 ~~L~l~~c~~l~~l~i~~----~~L~~L~l~~c~~l~~~~----~~~p~L~~l~~~g~~  178 (294)
                      +.+++..  +++.+.-..    .+|+.+.+...  ++.+.    .++ +|+++.+.+..
T Consensus       303 ~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          303 ARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTT  356 (401)
T ss_dssp             CEECCCT--TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSS
T ss_pred             CeEEeCC--ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCC
Confidence            8877763  355554322    56777776432  44443    234 67777776653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.56  E-value=0.00017  Score=56.02  Aligned_cols=11  Identities=0%  Similarity=-0.333  Sum_probs=5.5

Q ss_pred             ccEEEeeeccc
Q 036679           12 LRELGLFKCAA   22 (294)
Q Consensus        12 Lk~L~L~~~~~   22 (294)
                      .+.++++++.+
T Consensus        11 ~~~l~~s~n~l   21 (170)
T 3g39_A           11 GTTVDCSGKSL   21 (170)
T ss_dssp             TTEEECTTSCC
T ss_pred             CCEEEeCCCCc
Confidence            34555555544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.50  E-value=0.0002  Score=55.59  Aligned_cols=56  Identities=14%  Similarity=0.047  Sum_probs=23.5

Q ss_pred             CcccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecc
Q 036679           78 PNVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFR  134 (294)
Q Consensus        78 ~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~  134 (294)
                      ++|+.|+++++.+..  +..+..+++|++|+++++.++.- ....+.++++|+.|++++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCS
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCC
Confidence            344444444444211  12234445555555555544321 112233445555555544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.48  E-value=0.00012  Score=57.06  Aligned_cols=96  Identities=13%  Similarity=0.072  Sum_probs=63.6

Q ss_pred             ccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCCcccc----cccCCcccEEE
Q 036679           12 LRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDRLARV----SICGPNVRLVD   84 (294)
Q Consensus        12 Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~l~~~----~~~~~~L~~L~   84 (294)
                      -+.++++++.++.  ++.  .-.++|++|+++++. +..+   .+.++++|++|+++++. +..+    ....++|+.|+
T Consensus        14 ~~~l~~~~n~l~~--iP~--~~~~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~   87 (174)
T 2r9u_A           14 QTLVNCQNIRLAS--VPA--GIPTDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLD   87 (174)
T ss_dssp             SSEEECCSSCCSS--CCS--CCCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred             CcEEEeCCCCCCc--cCC--CcCCCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEE
Confidence            4677888776632  221  113678888888774 3332   24567888888888874 2222    12467899999


Q ss_pred             eeCCCCCc-c-cccccccccceEEecccccC
Q 036679           85 ISSLHAPC-G-INVALCKNLKELKLFKLSIT  113 (294)
Q Consensus        85 l~~c~~~~-~-~~~~~~~~L~~L~L~~~~i~  113 (294)
                      ++++.+.. + ..+..+++|++|+++++.+.
T Consensus        88 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           88 LNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            99887432 2 23677899999999998765

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.47  E-value=0.00012  Score=57.82  Aligned_cols=78  Identities=15%  Similarity=0.048  Sum_probs=43.3

Q ss_pred             CCCCccEEEccccCCccc-----c---cccCCcccEEEeeCCCCCcc------cccccccccceEEecccccChHHHH--
Q 036679           55 NLGKLSKFMVRNEDRLAR-----V---SICGPNVRLVDISSLHAPCG------INVALCKNLKELKLFKLSITNEWLC--  118 (294)
Q Consensus        55 ~l~~L~~L~l~~c~~l~~-----~---~~~~~~L~~L~l~~c~~~~~------~~~~~~~~L~~L~L~~~~i~~~~l~--  118 (294)
                      ..++|++|++++|..+..     +   ....++|++|++++|.+...      ..+...++|++|+|+++.+++++..  
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            346777777777622211     1   11245677777777664321      1123445677777777777665433  


Q ss_pred             -HHhcCCCCCcEEee
Q 036679          119 -NQFSELPFLEYLEI  132 (294)
Q Consensus       119 -~l~~~~~~L~~L~l  132 (294)
                       ..+..++.|+.|++
T Consensus       114 ~~~L~~n~~L~~L~L  128 (185)
T 1io0_A          114 VEALQSNTSLIELRI  128 (185)
T ss_dssp             HHGGGGCSSCCEEEC
T ss_pred             HHHHHhCCCceEEEe
Confidence             33445566777777

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.46  E-value=0.00032  Score=54.67  Aligned_cols=38  Identities=21%  Similarity=0.183  Sum_probs=15.8

Q ss_pred             cccccccceEEecccccChHHHHHHhcCCCCCcEEeecc
Q 036679           96 VALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFR  134 (294)
Q Consensus        96 ~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~  134 (294)
                      +..+++|++|+|+++.++.- ....+.++++|+.|++++
T Consensus        53 ~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           53 FDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             TTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCS
T ss_pred             hcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCC
Confidence            33444445555544444321 111223444455555444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.27  E-value=0.0003  Score=60.95  Aligned_cols=95  Identities=21%  Similarity=0.225  Sum_probs=52.8

Q ss_pred             EEEeeec-ccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccCCcccc----cccCCcccEEEe
Q 036679           14 ELGLFKC-AANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARV----SICGPNVRLVDI   85 (294)
Q Consensus        14 ~L~L~~~-~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~~l~~~----~~~~~~L~~L~l   85 (294)
                      .++++++ .++  .++. +..+++|++|+|++++.+..+.   +.++++|+.|+++++. +..+    ....++|+.|+|
T Consensus        12 ~v~~~~~n~l~--~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           12 GLRCTRDGALD--SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             CEECCSSCCCT--TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEEC
T ss_pred             EEEcCCCCCCC--ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeC
Confidence            3455555 453  2444 5666677777776544555443   4556677777777664 2222    124567777777


Q ss_pred             eCCCCCc-c-cccccccccceEEecccccC
Q 036679           86 SSLHAPC-G-INVALCKNLKELKLFKLSIT  113 (294)
Q Consensus        86 ~~c~~~~-~-~~~~~~~~L~~L~L~~~~i~  113 (294)
                      +++.+.. + ..+...+ |+.|++.++.+.
T Consensus        88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           88 SFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            7776321 1 1222333 777777777654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.20  E-value=0.0006  Score=59.03  Aligned_cols=87  Identities=16%  Similarity=0.119  Sum_probs=63.1

Q ss_pred             CCCCCCCCCCccEEEeee-cccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccC--Ccccccc
Q 036679            2 SPTRNVTLSSLRELGLFK-CAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNED--RLARVSI   75 (294)
Q Consensus         2 ~p~~~~~l~~Lk~L~L~~-~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~--~l~~~~~   75 (294)
                      +|. +..+++|++|+|++ |.+.. .....+.++++|+.|+|+++ .+..+.   +.++++|++|+++++.  .+..-.+
T Consensus        24 ip~-l~~~~~L~~L~l~~~n~l~~-~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~  100 (347)
T 2ifg_A           24 LHH-LPGAENLTELYIENQQHLQH-LELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV  100 (347)
T ss_dssp             TTT-SCSCSCCSEEECCSCSSCCE-ECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT
T ss_pred             cCC-CCCCCCeeEEEccCCCCCCC-cChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCccceeCHHHc
Confidence            677 88889999999996 87753 12234778999999999998 465553   4578999999999875  2222122


Q ss_pred             cCCcccEEEeeCCCCC
Q 036679           76 CGPNVRLVDISSLHAP   91 (294)
Q Consensus        76 ~~~~L~~L~l~~c~~~   91 (294)
                      ...+|+.|++.++.+.
T Consensus       101 ~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A          101 QGLSLQELVLSGNPLH  116 (347)
T ss_dssp             CSCCCCEEECCSSCCC
T ss_pred             ccCCceEEEeeCCCcc
Confidence            3334999999988754

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.06  E-value=0.0063  Score=53.97  Aligned_cols=217  Identities=11%  Similarity=0.098  Sum_probs=118.3

Q ss_pred             CccEEEeeec--ccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccC--CcccccccCCcccEE
Q 036679           11 SLRELGLFKC--AANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNED--RLARVSICGPNVRLV   83 (294)
Q Consensus        11 ~Lk~L~L~~~--~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~L   83 (294)
                      +|+.+.+.++  .+.+.+    +.+| +|+++.+..  +++.+.   +.+|++|+.+++.++.  .+..-.+.+.+|+.+
T Consensus       136 ~L~~i~l~~~i~~I~~~a----F~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l  208 (401)
T 4fdw_A          136 QIAKVVLNEGLKSIGDMA----FFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEV  208 (401)
T ss_dssp             CCSEEECCTTCCEECTTT----TTTC-CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEE
T ss_pred             CccEEEeCCCccEECHHh----cCCC-CceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEE
Confidence            6777777654  122222    2333 578877764  454443   4567888888887542  222223345778888


Q ss_pred             EeeCCCCCc-ccccccccccceEEeccc--ccChHHHHHHhcCCCCCcEEeecccccceeeccc----ccccceEEeecc
Q 036679           84 DISSLHAPC-GINVALCKNLKELKLFKL--SITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYLKKLLVRFC  156 (294)
Q Consensus        84 ~l~~c~~~~-~~~~~~~~~L~~L~L~~~--~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~~L~l~~c  156 (294)
                      .+...-... ...+.+|++|+.+.+..+  .+.+.    .+.+ .+|+.+.+..  +++.+...    +++|+.+.+.+.
T Consensus       209 ~lp~~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~----aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~  281 (401)
T 4fdw_A          209 LLPVTLKEIGSQAFLKTSQLKTIEIPENVSTIGQE----AFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGS  281 (401)
T ss_dssp             ECCTTCCEECTTTTTTCTTCCCEECCTTCCEECTT----TTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESS
T ss_pred             EeCCchheehhhHhhCCCCCCEEecCCCccCcccc----cccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCc
Confidence            876542111 234667888888888653  13222    2333 5788888743  35555332    267888887654


Q ss_pred             cC----ceeee----ccCCCccEEEEcCcee----eeecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEE
Q 036679          157 NK----LYEFK----LDTPNLSVFDYEGDMV----SFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNL  224 (294)
Q Consensus       157 ~~----l~~~~----~~~p~L~~l~~~g~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~  224 (294)
                      ..    .+.+.    .++++|+++.+.....    ..+.++.+|+.+.+.-.......       ..+.++ +|+. +.+
T Consensus       282 ~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~-------~aF~~~-~L~~-l~l  352 (401)
T 4fdw_A          282 TFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPANVTQINF-------SAFNNT-GIKE-VKV  352 (401)
T ss_dssp             CCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTTCCEECT-------TSSSSS-CCCE-EEE
T ss_pred             cccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECccccEEcH-------HhCCCC-CCCE-EEE
Confidence            32    11233    3567888887764311    34556778888877211100111       123445 6777 577


Q ss_pred             eeeeeeecchhhhhccCCCC-CCCceEEEEE
Q 036679          225 ECYAAAIIPRELREILSSPL-TYENHVCFII  254 (294)
Q Consensus       225 ~~~~~~~~p~~~~~~~~~~f-~~Lk~L~L~~  254 (294)
                      ..+....++++.+    ..+ .+++.|.+-.
T Consensus       353 ~~n~~~~l~~~~F----~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          353 EGTTPPQVFEKVW----YGFPDDITVIRVPA  379 (401)
T ss_dssp             CCSSCCBCCCSSC----CCSCTTCCEEEECG
T ss_pred             cCCCCcccccccc----cCCCCCccEEEeCH
Confidence            7665555554422    222 2566666653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.84  E-value=0.0017  Score=54.22  Aligned_cols=16  Identities=31%  Similarity=0.233  Sum_probs=7.7

Q ss_pred             cccccceEEecccccC
Q 036679           98 LCKNLKELKLFKLSIT  113 (294)
Q Consensus        98 ~~~~L~~L~L~~~~i~  113 (294)
                      .+++|+.|+|++|.++
T Consensus       194 ~l~~L~~L~Ls~N~i~  209 (267)
T 3rw6_A          194 KAPNLKILNLSGNELK  209 (267)
T ss_dssp             HSTTCCEEECTTSCCC
T ss_pred             hCCCCCEEECCCCccC
Confidence            4444555555544443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.39  E-value=0.0017  Score=54.23  Aligned_cols=77  Identities=13%  Similarity=0.051  Sum_probs=48.5

Q ss_pred             HHhcCCCCCEEEEEcCCCCCeec-----cCCCCCccEEEccccC--Ccccccc-cCCcccEEEeeCCCCCc--c------
Q 036679           30 IVAGCPLIERLKIIDCRGLKSLE-----FLNLGKLSKFMVRNED--RLARVSI-CGPNVRLVDISSLHAPC--G------   93 (294)
Q Consensus        30 ~~~~~~~Le~L~L~~c~~l~~l~-----~~~l~~L~~L~l~~c~--~l~~~~~-~~~~L~~L~l~~c~~~~--~------   93 (294)
                      +..++|+|+.|+|+++. +..+.     +..+++|+.|+++++.  .+..+.. ...+|+.|++.++.+..  +      
T Consensus       165 ~~~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~  243 (267)
T 3rw6_A          165 IEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYI  243 (267)
T ss_dssp             HHHHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred             HHhhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence            34678888888888874 33221     1257888888888775  3322211 11288999998887431  1      


Q ss_pred             -cccccccccceEEe
Q 036679           94 -INVALCKNLKELKL  107 (294)
Q Consensus        94 -~~~~~~~~L~~L~L  107 (294)
                       ..+..+|+|+.|+=
T Consensus       244 ~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          244 SAIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHHCTTCCEESS
T ss_pred             HHHHHHCcccCeECC
Confidence             23567888888753

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.59  E-value=0.091  Score=46.08  Aligned_cols=14  Identities=14%  Similarity=0.396  Sum_probs=7.3

Q ss_pred             cccccccceEEecc
Q 036679           96 VALCKNLKELKLFK  109 (294)
Q Consensus        96 ~~~~~~L~~L~L~~  109 (294)
                      +..|.+++.+.+..
T Consensus       249 f~~~~~l~~~~~~~  262 (394)
T 4fs7_A          249 FYGCTDLESISIQN  262 (394)
T ss_dssp             TTTCSSCCEEEECC
T ss_pred             ccccccceeEEcCC
Confidence            34555555555543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.58  E-value=0.036  Score=43.86  Aligned_cols=21  Identities=10%  Similarity=0.129  Sum_probs=15.1

Q ss_pred             HHHHHHHhcCCCCCEEEEEcC
Q 036679           25 EAIRDIVAGCPLIERLKIIDC   45 (294)
Q Consensus        25 ~~l~~~~~~~~~Le~L~L~~c   45 (294)
                      +.+..+...-+.|++|+|+++
T Consensus        31 ~~l~~ll~~n~~L~~L~L~~n   51 (197)
T 1pgv_A           31 SCINRLREDDTDLKEVNINNM   51 (197)
T ss_dssp             HHHHHHHTTCSSCCEEECTTC
T ss_pred             HHHHHHHhcCCCccEEECCCC
Confidence            566677777777888877664

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.26  E-value=0.17  Score=44.26  Aligned_cols=96  Identities=19%  Similarity=0.288  Sum_probs=52.0

Q ss_pred             HhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCCcccc----cccCCcccEEEeeCCCCCc-cccccccccc
Q 036679           31 VAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDRLARV----SICGPNVRLVDISSLHAPC-GINVALCKNL  102 (294)
Q Consensus        31 ~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~c~~~~-~~~~~~~~~L  102 (294)
                      +.+|+.|+.+.+...  +..+   .+.+|+.|+.+.+..  .+..+    ...+.+|+.+.+...-... ...+.+|.+|
T Consensus       261 F~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          261 FDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQL  336 (394)
T ss_dssp             TTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTC
T ss_pred             eeecccccEEecccc--cceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCC
Confidence            456777777766432  2222   233456677666643  22222    1245677777765432111 1245677778


Q ss_pred             ceEEeccc--ccChHHHHHHhcCCCCCcEEeecc
Q 036679          103 KELKLFKL--SITNEWLCNQFSELPFLEYLEIFR  134 (294)
Q Consensus       103 ~~L~L~~~--~i~~~~l~~l~~~~~~L~~L~l~~  134 (294)
                      +.+.+-..  .+.+    ..+.+|.+|+.+++.+
T Consensus       337 ~~i~ip~sv~~I~~----~aF~~C~~L~~i~~~~  366 (394)
T 4gt6_A          337 ERIAIPSSVTKIPE----SAFSNCTALNNIEYSG  366 (394)
T ss_dssp             CEEEECTTCCBCCG----GGGTTCTTCCEEEESS
T ss_pred             CEEEECcccCEEhH----hHhhCCCCCCEEEECC
Confidence            88777432  1322    2466788888877765

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.26  E-value=0.089  Score=41.56  Aligned_cols=80  Identities=10%  Similarity=0.049  Sum_probs=49.3

Q ss_pred             CCCccEEEccccCCccc-----c---cccCCcccEEEeeCCCCCcc------cccccccccceEEecccccChHHHHH--
Q 036679           56 LGKLSKFMVRNEDRLAR-----V---SICGPNVRLVDISSLHAPCG------INVALCKNLKELKLFKLSITNEWLCN--  119 (294)
Q Consensus        56 l~~L~~L~l~~c~~l~~-----~---~~~~~~L~~L~l~~c~~~~~------~~~~~~~~L~~L~L~~~~i~~~~l~~--  119 (294)
                      -++|++|+++++..+..     +   .....+|+.|++++|.+...      ..+..-..|++|+|+.+.+++++...  
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            36788888876532221     1   11346788888888874321      12334467888888888888765443  


Q ss_pred             -HhcCCCCCcEEeeccc
Q 036679          120 -QFSELPFLEYLEIFRC  135 (294)
Q Consensus       120 -l~~~~~~L~~L~l~~c  135 (294)
                       .+..-..|+.|+++++
T Consensus       120 ~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHTTTTCCCSEEECCCC
T ss_pred             HHHhhCCceeEEECCCC
Confidence             3444566888888754

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=93.23  E-value=0.21  Score=43.72  Aligned_cols=171  Identities=15%  Similarity=0.143  Sum_probs=81.2

Q ss_pred             CCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccC-Ccccc-cccCCccc
Q 036679            7 VTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNED-RLARV-SICGPNVR   81 (294)
Q Consensus         7 ~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~-~l~~~-~~~~~~L~   81 (294)
                      ..++.|+.+.+......   +......+..|+.+.+...  +..+   ...++..|+.+.+.... .+..- ...+..++
T Consensus       205 ~~~~~L~~i~~~~~~~~---i~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~  279 (394)
T 4fs7_A          205 AECILLENMEFPNSLYY---LGDFALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLK  279 (394)
T ss_dssp             TTCTTCCBCCCCTTCCE---ECTTTTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCC
T ss_pred             ccccccceeecCCCceE---eehhhcccCCCceEEECCC--ceecccccccccccceeEEcCCCcceeeccccccccccc
Confidence            45666777666554211   0111334567777777542  2222   23455667766665422 11110 11344555


Q ss_pred             EEEeeCCCCCcccccccccccceEEeccc--ccChHHHHHHhcCCCCCcEEeecccccceeeccc----ccccceEEeec
Q 036679           82 LVDISSLHAPCGINVALCKNLKELKLFKL--SITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYLKKLLVRF  155 (294)
Q Consensus        82 ~L~l~~c~~~~~~~~~~~~~L~~L~L~~~--~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~~L~l~~  155 (294)
                      .........+ ...+..|.+|+.+.+...  .+.+    ..+.+|.+|+.+++..  +++.+.-.    +.+|+.+.+..
T Consensus       280 ~~~~~~~~i~-~~~F~~~~~L~~i~l~~~i~~I~~----~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~  352 (394)
T 4fs7_A          280 KVIYGSVIVP-EKTFYGCSSLTEVKLLDSVKFIGE----EAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL  352 (394)
T ss_dssp             EEEECSSEEC-TTTTTTCTTCCEEEECTTCCEECT----TTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT
T ss_pred             eeccCceeec-cccccccccccccccccccceech----hhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc
Confidence            5444332211 123456667777766443  1222    2355677777777642  34444322    24666666543


Q ss_pred             ccCceeee----ccCCCccEEEEcCcee---eeecCccccceE
Q 036679          156 CNKLYEFK----LDTPNLSVFDYEGDMV---SFSSNALALSET  191 (294)
Q Consensus       156 c~~l~~~~----~~~p~L~~l~~~g~~~---~~~~~~~~L~~~  191 (294)
                      .  ++.+.    .+|++|+++.+.....   ..+.++.+|+.+
T Consensus       353 ~--l~~I~~~aF~~C~~L~~i~lp~~~~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          353 S--LRKIGANAFQGCINLKKVELPKRLEQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             T--CCEECTTTBTTCTTCCEEEEEGGGGGGGGGBCTTCEEEEE
T ss_pred             c--ccEehHHHhhCCCCCCEEEECCCCEEhhheecCCCCCcEE
Confidence            2  33443    2456677766643311   334555555554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=92.67  E-value=0.24  Score=43.38  Aligned_cols=98  Identities=17%  Similarity=0.163  Sum_probs=61.5

Q ss_pred             cCCCCCccEEEccccC-Cccc-ccccCCcccEEEeeCCCCCc-ccccccccccceEEeccc--ccChHHHHHHhcCCCCC
Q 036679           53 FLNLGKLSKFMVRNED-RLAR-VSICGPNVRLVDISSLHAPC-GINVALCKNLKELKLFKL--SITNEWLCNQFSELPFL  127 (294)
Q Consensus        53 ~~~l~~L~~L~l~~c~-~l~~-~~~~~~~L~~L~l~~c~~~~-~~~~~~~~~L~~L~L~~~--~i~~~~l~~l~~~~~~L  127 (294)
                      +.+|..|+.+.+.+.. .+.. ....+++|+.+.+...-... ...+.+|.+|+.+.+...  .+.+    ..+.+|.+|
T Consensus       261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~----~aF~~C~~L  336 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILD----DAFAGCEQL  336 (394)
T ss_dssp             TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECT----TTTTTCTTC
T ss_pred             eeecccccEEecccccceecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehH----hHhhCCCCC
Confidence            3467788888875422 1111 12256788888886543211 234778999999999653  2433    347789999


Q ss_pred             cEEeecccccceeeccc----ccccceEEeecc
Q 036679          128 EYLEIFRCMKIRSIKIS----SPYLKKLLVRFC  156 (294)
Q Consensus       128 ~~L~l~~c~~l~~l~i~----~~~L~~L~l~~c  156 (294)
                      +.+.+..  +++.+.-.    +.+|+.+++.+.
T Consensus       337 ~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          337 ERIAIPS--SVTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             CEEEECT--TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred             CEEEECc--ccCEEhHhHhhCCCCCCEEEECCc
Confidence            9999953  35555432    367888877654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=82.28  E-value=2.1  Score=36.91  Aligned_cols=105  Identities=11%  Similarity=0.194  Sum_probs=57.2

Q ss_pred             HhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCCcccc----cccCCcccEEEeeCCCCCc-cccccccccc
Q 036679           31 VAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDRLARV----SICGPNVRLVDISSLHAPC-GINVALCKNL  102 (294)
Q Consensus        31 ~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~c~~~~-~~~~~~~~~L  102 (294)
                      ...+.+|+.+.+..  ++..+   ...++..|+.+.+...  +..+    ...+.+|+.+.+...-... ...+.+|.+|
T Consensus       213 f~~~~~l~~i~~~~--~~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L  288 (379)
T 4h09_A          213 FSYGKNLKKITITS--GVTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNL  288 (379)
T ss_dssp             TTTCSSCSEEECCT--TCCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTC
T ss_pred             cccccccceeeecc--ceeEEccccccCCccceEEEcCCC--ccEeCccccceeehhccccccccceecccccccccccc
Confidence            44566777776643  23332   2345567777776542  2222    1235667777765442111 1345678888


Q ss_pred             ceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec
Q 036679          103 KELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK  142 (294)
Q Consensus       103 ~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~  142 (294)
                      +.+.+..+.++.- -...+.+|.+|+.+++..  +++.+.
T Consensus       289 ~~i~l~~~~i~~I-~~~aF~~c~~L~~i~lp~--~l~~I~  325 (379)
T 4h09_A          289 TKVVMDNSAIETL-EPRVFMDCVKLSSVTLPT--ALKTIQ  325 (379)
T ss_dssp             CEEEECCTTCCEE-CTTTTTTCTTCCEEECCT--TCCEEC
T ss_pred             cccccccccccee-hhhhhcCCCCCCEEEcCc--cccEEH
Confidence            8888876543220 012466788888888753  344443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=82.06  E-value=2  Score=37.06  Aligned_cols=111  Identities=14%  Similarity=0.130  Sum_probs=63.7

Q ss_pred             CCCCccEEEccccCCcccc----cccCCcccEEEeeCCCCCc-ccccccccccceEEeccc--ccChHHHHHHhcCCCCC
Q 036679           55 NLGKLSKFMVRNEDRLARV----SICGPNVRLVDISSLHAPC-GINVALCKNLKELKLFKL--SITNEWLCNQFSELPFL  127 (294)
Q Consensus        55 ~l~~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~c~~~~-~~~~~~~~~L~~L~L~~~--~i~~~~l~~l~~~~~~L  127 (294)
                      .+..|+.+.+...  +..+    ...+..|+.+.+...-... ...+..|.+|+.+.+...  .+.+    ..+.+|++|
T Consensus       215 ~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~i~~i~~----~aF~~c~~L  288 (379)
T 4h09_A          215 YGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAKVKTVPY----LLCSGCSNL  288 (379)
T ss_dssp             TCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCCCSEECT----TTTTTCTTC
T ss_pred             cccccceeeeccc--eeEEccccccCCccceEEEcCCCccEeCccccceeehhccccccccceeccc----ccccccccc
Confidence            4567777776542  2222    2246778888876553211 134567888999988653  1222    346789999


Q ss_pred             cEEeecccccceeeccc----ccccceEEeecccCceeee----ccCCCccEEEE
Q 036679          128 EYLEIFRCMKIRSIKIS----SPYLKKLLVRFCNKLYEFK----LDTPNLSVFDY  174 (294)
Q Consensus       128 ~~L~l~~c~~l~~l~i~----~~~L~~L~l~~c~~l~~~~----~~~p~L~~l~~  174 (294)
                      +.+.+.+ ..++.+.-.    +.+|+.+.+..  .++.+.    .+|.+|+++.+
T Consensus       289 ~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          289 TKVVMDN-SAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             CEEEECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred             ccccccc-cccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence            9999875 235555432    25677777642  233443    23455555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	294
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.65
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.4
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.37
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.26
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.22
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.21
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.21
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.2
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.2
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.16
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.16
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.12
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.04
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.96
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.9
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.84
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.82
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.81
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.68
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.64
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.64
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.5
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.48
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.47
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.34
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.34
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.34
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.28
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.2
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.16
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.92
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.86
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.63
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.51
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.33
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.17
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.63
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.52
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.2
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.59

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.1e-16  Score=133.10  Aligned_cols=172  Identities=12%  Similarity=0.187  Sum_probs=133.3

Q ss_pred             CCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCe---eccCCCCCccEEEccccCCcccc-----ccc
Q 036679            5 RNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKS---LEFLNLGKLSKFMVRNEDRLARV-----SIC   76 (294)
Q Consensus         5 ~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~---l~~~~l~~L~~L~l~~c~~l~~~-----~~~   76 (294)
                      ......+|++|+|++|.++++.+..++.+|++|++|++++|. +..   -.+..+++|++|++++|.++.+.     ...
T Consensus        41 ~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~  119 (284)
T d2astb2          41 EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS  119 (284)
T ss_dssp             SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH
T ss_pred             hhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccC-CCcHHHHHHhcCCCCcCccccccccccccccchhhHH
Confidence            345677999999999999989999999999999999999995 221   12456799999999999876532     235


Q ss_pred             CCcccEEEeeCCCC-Ccc---c-ccccccccceEEeccc--ccChHHHHHHhcCCCCCcEEeecccccceeeccc----c
Q 036679           77 GPNVRLVDISSLHA-PCG---I-NVALCKNLKELKLFKL--SITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----S  145 (294)
Q Consensus        77 ~~~L~~L~l~~c~~-~~~---~-~~~~~~~L~~L~L~~~--~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~  145 (294)
                      +++|++|++++|.. ...   . ....+++|+.|++.++  .+++..+..+..+||+|++|++++|..++.-.+.    .
T Consensus       120 ~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~  199 (284)
T d2astb2         120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL  199 (284)
T ss_dssp             CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred             HHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhccc
Confidence            79999999999862 211   1 1234689999999986  4788888888889999999999999887653332    2


Q ss_pred             cccceEEeecccCceeee----ccCCCccEEEEcCc
Q 036679          146 PYLKKLLVRFCNKLYEFK----LDTPNLSVFDYEGD  177 (294)
Q Consensus       146 ~~L~~L~l~~c~~l~~~~----~~~p~L~~l~~~g~  177 (294)
                      ++|++|++++|..+++-.    ..+|+|+++++.|+
T Consensus       200 ~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         200 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            799999999998776432    24678888887765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.6e-13  Score=115.25  Aligned_cols=149  Identities=21%  Similarity=0.277  Sum_probs=113.9

Q ss_pred             CCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec----cCCCCCccEEEccccCCcccc------ccc
Q 036679            7 VTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE----FLNLGKLSKFMVRNEDRLARV------SIC   76 (294)
Q Consensus         7 ~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~----~~~l~~L~~L~l~~c~~l~~~------~~~   76 (294)
                      .++++|++|+|++|.+++..+.. +..+++|++|++++|.++..-.    ..++++|++|++++|..+.+.      ...
T Consensus        68 ~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~  146 (284)
T d2astb2          68 SQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  146 (284)
T ss_dssp             TTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             HhCCCcccccccccCCCcHHHHH-HhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccc
Confidence            46899999999999998777765 4679999999999998774211    245799999999999765331      223


Q ss_pred             CCcccEEEeeCCCC--Ccc---cccccccccceEEeccc-ccChHHHHHHhcCCCCCcEEeecccccceeeccc----cc
Q 036679           77 GPNVRLVDISSLHA--PCG---INVALCKNLKELKLFKL-SITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SP  146 (294)
Q Consensus        77 ~~~L~~L~l~~c~~--~~~---~~~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~  146 (294)
                      +++|+.|++++|..  ...   ..+..|++|++|+++++ .++++.+.. +.+|++|++|++++|..++.-.+.    .+
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~-l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~  225 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFQLNYLQHLSLSRCYDIIPETLLELGEIP  225 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTCTTCCGGGGGGGGGCT
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccCCCchhhhh-hcccCcCCEEECCCCCCCChHHHHHHhcCC
Confidence            68999999998752  211   22457899999999987 478765544 567999999999999887653222    27


Q ss_pred             ccceEEeeccc
Q 036679          147 YLKKLLVRFCN  157 (294)
Q Consensus       147 ~L~~L~l~~c~  157 (294)
                      +|++|++.+|-
T Consensus       226 ~L~~L~l~~~~  236 (284)
T d2astb2         226 TLKTLQVFGIV  236 (284)
T ss_dssp             TCCEEECTTSS
T ss_pred             CCCEEeeeCCC
Confidence            99999999983

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.37  E-value=6e-12  Score=109.18  Aligned_cols=78  Identities=15%  Similarity=0.141  Sum_probs=43.9

Q ss_pred             ccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecc-c-ccccceEEeecccCceeee--ccCCCccEE
Q 036679           97 ALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKI-S-SPYLKKLLVRFCNKLYEFK--LDTPNLSVF  172 (294)
Q Consensus        97 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i-~-~~~L~~L~l~~c~~l~~~~--~~~p~L~~l  172 (294)
                      ..+++++.+.+.++.+++.  . -...+++|+.|+++++. ++.+.. . .++|+.+++.+|. ++.++  ...++|+++
T Consensus       194 ~~l~~~~~l~l~~n~i~~~--~-~~~~~~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~L  268 (384)
T d2omza2         194 AKLTNLESLIATNNQISDI--T-PLGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQ-ISNLAPLSGLTKLTEL  268 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCC--G-GGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSC-CCCCGGGTTCTTCSEE
T ss_pred             ccccccceeeccCCccCCC--C-cccccCCCCEEECCCCC-CCCcchhhcccccchhccccCc-cCCCCcccccccCCEe
Confidence            3456677777777665542  1 13456777777777653 333321 1 2567777777765 22222  245667777


Q ss_pred             EEcCcee
Q 036679          173 DYEGDMV  179 (294)
Q Consensus       173 ~~~g~~~  179 (294)
                      ++++...
T Consensus       269 ~l~~~~l  275 (384)
T d2omza2         269 KLGANQI  275 (384)
T ss_dssp             ECCSSCC
T ss_pred             eccCccc
Confidence            7665543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.26  E-value=3.2e-11  Score=97.34  Aligned_cols=177  Identities=19%  Similarity=0.167  Sum_probs=87.6

Q ss_pred             CCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccC--CcccccccCCcccEEEee
Q 036679            9 LSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNED--RLARVSICGPNVRLVDIS   86 (294)
Q Consensus         9 l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~   86 (294)
                      +.+|+.|++.+|.+++  +.. ++.+++|++|+++++.--....+..+++|+.++++++.  .+..+ ...++|+.+.++
T Consensus        40 l~~L~~L~l~~~~i~~--l~~-l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~l-~~l~~L~~l~l~  115 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTT--IEG-VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAI-AGLQSIKTLDLT  115 (227)
T ss_dssp             HHTCCEEECTTSCCCC--CTT-GGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGG-TTCTTCCEEECT
T ss_pred             cCCcCEEECCCCCCCc--chh-HhcCCCCcEeecCCceeeccccccccccccccccccccccccccc-cccccccccccc
Confidence            5677777777777643  221 56777777777777642221235566777777776654  22222 135666777666


Q ss_pred             CCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccc-cccceEEeecccCceeee--
Q 036679           87 SLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISS-PYLKKLLVRFCNKLYEFK--  163 (294)
Q Consensus        87 ~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~-~~L~~L~l~~c~~l~~~~--  163 (294)
                      ++.......+...+.++.+.+..+.+....   .+.++++|+.|++.++.......+.. ++|+.|++++|. +++++  
T Consensus       116 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~-l~~l~~l  191 (227)
T d1h6ua2         116 STQITDVTPLAGLSNLQVLYLDLNQITNIS---PLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK-ISDISPL  191 (227)
T ss_dssp             TSCCCCCGGGTTCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCCGGG
T ss_pred             cccccccchhccccchhhhhchhhhhchhh---hhccccccccccccccccccchhhcccccceecccCCCc-cCCChhh
Confidence            665322222333445555555554433210   12345555555555543211111221 455555555552 33332  


Q ss_pred             ccCCCccEEEEcCceee---eecCccccceEEE
Q 036679          164 LDTPNLSVFDYEGDMVS---FSSNALALSETSL  193 (294)
Q Consensus       164 ~~~p~L~~l~~~g~~~~---~~~~~~~L~~~~i  193 (294)
                      ..+|+|+.|+++++.+.   .+.+.++|+.+++
T Consensus       192 ~~l~~L~~L~Ls~N~lt~i~~l~~l~~L~~L~l  224 (227)
T d1h6ua2         192 ASLPNLIEVHLKNNQISDVSPLANTSNLFIVTL  224 (227)
T ss_dssp             GGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEE
T ss_pred             cCCCCCCEEECcCCcCCCCcccccCCCCCEEEe
Confidence            23455555555555431   1223444555544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.22  E-value=1.9e-11  Score=103.04  Aligned_cols=172  Identities=14%  Similarity=0.079  Sum_probs=99.5

Q ss_pred             CCCCCCCCCCccEEEeeecccChHHHH-HHHhcCCCCCEEEEEcCCCCCe--eccCCCCCccEEEccccCCccccc-ccC
Q 036679            2 SPTRNVTLSSLRELGLFKCAANDEAIR-DIVAGCPLIERLKIIDCRGLKS--LEFLNLGKLSKFMVRNEDRLARVS-ICG   77 (294)
Q Consensus         2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~-~~~~~~~~Le~L~L~~c~~l~~--l~~~~l~~L~~L~l~~c~~l~~~~-~~~   77 (294)
                      +|.++  .+++|+|+|++|.++.  ++ ..+.++++|++|+++++.-...  -.+.++++|++++++++. ++.+. ...
T Consensus        25 lP~~l--~~~l~~L~Ls~N~i~~--l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~-l~~l~~~~~   99 (305)
T d1xkua_          25 VPKDL--PPDTALLDLQNNKITE--IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP   99 (305)
T ss_dssp             CCCSC--CTTCCEEECCSSCCCC--BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC
T ss_pred             cCCCC--CCCCCEEECcCCcCCC--cChhHhhccccccccccccccccccchhhhhCCCccCEecccCCc-cCcCccchh
Confidence            45544  3689999999987742  22 2367788999999988864322  225567888888888774 33331 234


Q ss_pred             CcccEEEeeCCCCCc--ccccccccccceEEecccccChH-HHHHHhcCCCCCcEEeecccccceeecccc-cccceEEe
Q 036679           78 PNVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNE-WLCNQFSELPFLEYLEIFRCMKIRSIKISS-PYLKKLLV  153 (294)
Q Consensus        78 ~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~-~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~-~~L~~L~l  153 (294)
                      +.++.|++.++....  ...+.....+..+....+..... .....+..++.|+.+++.++. +..++... ++|++|++
T Consensus       100 ~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l~~~~~~~L~~L~l  178 (305)
T d1xkua_         100 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHL  178 (305)
T ss_dssp             TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEEC
T ss_pred             hhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC-ccccCcccCCccCEEEC
Confidence            567777777665321  12233445556666555432211 122335567778888877754 33333222 57777777


Q ss_pred             ecccCceeee---ccCCCccEEEEcCcee
Q 036679          154 RFCNKLYEFK---LDTPNLSVFDYEGDMV  179 (294)
Q Consensus       154 ~~c~~l~~~~---~~~p~L~~l~~~g~~~  179 (294)
                      .++.......   ...+.++++.++++.+
T Consensus       179 ~~n~~~~~~~~~~~~~~~l~~L~~s~n~l  207 (305)
T d1xkua_         179 DGNKITKVDAASLKGLNNLAKLGLSFNSI  207 (305)
T ss_dssp             TTSCCCEECTGGGTTCTTCCEEECCSSCC
T ss_pred             CCCcCCCCChhHhhccccccccccccccc
Confidence            7765433222   2345666666665533

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.21  E-value=4.1e-11  Score=94.76  Aligned_cols=155  Identities=16%  Similarity=0.186  Sum_probs=113.9

Q ss_pred             CCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccC--CcccccccCCcccEEE
Q 036679            8 TLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNED--RLARVSICGPNVRLVD   84 (294)
Q Consensus         8 ~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~L~   84 (294)
                      .++++++|+++++.+++  +. -++.+++|++|++++|. +..+ .+.++++|++|+++++.  .+..+ ...++|+.++
T Consensus        38 ~l~~l~~L~l~~~~i~~--l~-~l~~l~nL~~L~Ls~N~-l~~~~~l~~l~~L~~L~l~~n~~~~~~~l-~~l~~L~~L~  112 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKS--ID-GVEYLNNLTQINFSNNQ-LTDITPLKNLTKLVDILMNNNQIADITPL-ANLTNLTGLT  112 (199)
T ss_dssp             HHTTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCGGG-TTCTTCSEEE
T ss_pred             HhcCCCEEECCCCCCCC--cc-ccccCCCcCcCcccccc-ccCcccccCCccccccccccccccccccc-cccccccccc
Confidence            36899999999998864  21 15789999999999984 4433 36788999999999886  22222 2568999999


Q ss_pred             eeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec-ccc-cccceEEeecccCceee
Q 036679           85 ISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK-ISS-PYLKKLLVRFCNKLYEF  162 (294)
Q Consensus        85 l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~-i~~-~~L~~L~l~~c~~l~~~  162 (294)
                      ++++.......+..+++|+.|+++++.+..  +. .+..+++|+.|++.++. ++.+. +.. ++|++|++++|. ++++
T Consensus       113 l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~-~l~~~~~L~~L~l~~n~-l~~l~~l~~l~~L~~L~ls~N~-i~~i  187 (199)
T d2omxa2         113 LFNNQITDIDPLKNLTNLNRLELSSNTISD--IS-ALSGLTSLQQLNFSSNQ-VTDLKPLANLTTLERLDISSNK-VSDI  187 (199)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEECCSSCCCC--CG-GGTTCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCC
T ss_pred             ccccccccccccchhhhhHHhhhhhhhhcc--cc-ccccccccccccccccc-ccCCccccCCCCCCEEECCCCC-CCCC
Confidence            998875444456778999999999998764  22 36779999999999864 55553 333 799999999985 6655


Q ss_pred             e--ccCCCccEE
Q 036679          163 K--LDTPNLSVF  172 (294)
Q Consensus       163 ~--~~~p~L~~l  172 (294)
                      +  ...++|++|
T Consensus       188 ~~l~~L~~L~~L  199 (199)
T d2omxa2         188 SVLAKLTNLESL  199 (199)
T ss_dssp             GGGGGCTTCSEE
T ss_pred             ccccCCCCCCcC
Confidence            4  245666654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.21  E-value=8.1e-11  Score=94.92  Aligned_cols=162  Identities=17%  Similarity=0.128  Sum_probs=102.9

Q ss_pred             CCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccCCcccc-cccCCcccE
Q 036679            5 RNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNEDRLARV-SICGPNVRL   82 (294)
Q Consensus         5 ~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~~l~~~-~~~~~~L~~   82 (294)
                      ++..+++|++|++++|.+++-.  . +..+++++.++++++. ++.+ .+.++++|+.++++++...... ....+.++.
T Consensus        58 ~l~~l~~L~~L~ls~n~i~~~~--~-l~~l~~l~~l~~~~n~-~~~i~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~  133 (227)
T d1h6ua2          58 GVQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV  133 (227)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCE
T ss_pred             hHhcCCCCcEeecCCceeeccc--c-cccccccccccccccc-ccccccccccccccccccccccccccchhccccchhh
Confidence            3556788888888888775411  1 5777888888887764 2222 2456677888888776522211 124566777


Q ss_pred             EEeeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecc-c-ccccceEEeecccCce
Q 036679           83 VDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKI-S-SPYLKKLLVRFCNKLY  160 (294)
Q Consensus        83 L~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i-~-~~~L~~L~l~~c~~l~  160 (294)
                      +.+.++.......+..+++|++|++.++.+++.  . .++++++|+.|+++++ .++.+.. . .++|++|++++|. ++
T Consensus       134 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~Ls~n-~l~~l~~l~~l~~L~~L~Ls~N~-lt  208 (227)
T d1h6ua2         134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL--T-PLANLSKLTTLKADDN-KISDISPLASLPNLIEVHLKNNQ-IS  208 (227)
T ss_dssp             EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--G-GGTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECTTSC-CC
T ss_pred             hhchhhhhchhhhhccccccccccccccccccc--h-hhcccccceecccCCC-ccCCChhhcCCCCCCEEECcCCc-CC
Confidence            777766644333456677788888887766542  1 2566788888888776 4555432 2 2678888888874 55


Q ss_pred             eee--ccCCCccEEEEc
Q 036679          161 EFK--LDTPNLSVFDYE  175 (294)
Q Consensus       161 ~~~--~~~p~L~~l~~~  175 (294)
                      +++  .+.++|+.++++
T Consensus       209 ~i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         209 DVSPLANTSNLFIVTLT  225 (227)
T ss_dssp             BCGGGTTCTTCCEEEEE
T ss_pred             CCcccccCCCCCEEEee
Confidence            554  356777777764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.20  E-value=9.6e-11  Score=92.60  Aligned_cols=140  Identities=20%  Similarity=0.207  Sum_probs=94.1

Q ss_pred             cCCCCCEEEEEcCCCCCeec-cCCCCCccEEEccccCCcccc--cccCCcccEEEeeCCCCCcccccccccccceEEecc
Q 036679           33 GCPLIERLKIIDCRGLKSLE-FLNLGKLSKFMVRNEDRLARV--SICGPNVRLVDISSLHAPCGINVALCKNLKELKLFK  109 (294)
Q Consensus        33 ~~~~Le~L~L~~c~~l~~l~-~~~l~~L~~L~l~~c~~l~~~--~~~~~~L~~L~l~~c~~~~~~~~~~~~~L~~L~L~~  109 (294)
                      .++++++|+++++. +..+. +..+++|++|+++++. +..+  ...+++|+.|++++|.......+..+++|+.+++.+
T Consensus        38 ~l~~l~~L~l~~~~-i~~l~~l~~l~nL~~L~Ls~N~-l~~~~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~  115 (199)
T d2omxa2          38 DLDQVTTLQADRLG-IKSIDGVEYLNNLTQINFSNNQ-LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN  115 (199)
T ss_dssp             HHTTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred             HhcCCCEEECCCCC-CCCccccccCCCcCcCcccccc-ccCcccccCCcccccccccccccccccccccccccccccccc
Confidence            35778888888874 33332 4567888889888875 3222  124678888888888643333466788888888888


Q ss_pred             cccChHHHHHHhcCCCCCcEEeecccccceeec-ccc-cccceEEeecccCceeee--ccCCCccEEEEcCcee
Q 036679          110 LSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK-ISS-PYLKKLLVRFCNKLYEFK--LDTPNLSVFDYEGDMV  179 (294)
Q Consensus       110 ~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~-i~~-~~L~~L~l~~c~~l~~~~--~~~p~L~~l~~~g~~~  179 (294)
                      +.....   ..+..+++|+.|+++++. +..+. +.. ++|+.|++.+|. +++++  .+.++|++|+++++.+
T Consensus       116 ~~~~~~---~~~~~l~~L~~L~l~~n~-l~~~~~l~~~~~L~~L~l~~n~-l~~l~~l~~l~~L~~L~ls~N~i  184 (199)
T d2omxa2         116 NQITDI---DPLKNLTNLNRLELSSNT-ISDISALSGLTSLQQLNFSSNQ-VTDLKPLANLTTLERLDISSNKV  184 (199)
T ss_dssp             SCCCCC---GGGTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSSCC
T ss_pred             cccccc---cccchhhhhHHhhhhhhh-hccccccccccccccccccccc-ccCCccccCCCCCCEEECCCCCC
Confidence            765542   125668889999888764 44443 222 688888888875 44443  3568888888888765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.20  E-value=7.2e-11  Score=94.18  Aligned_cols=158  Identities=15%  Similarity=0.164  Sum_probs=107.6

Q ss_pred             CCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccCCcccc--cccCCcccEEEe
Q 036679            9 LSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNEDRLARV--SICGPNVRLVDI   85 (294)
Q Consensus         9 l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~~l~~~--~~~~~~L~~L~l   85 (294)
                      +.+|++|+++++.+++  +.. +..+++|++|+++++. +..+ .+..+++|+.|+++++. +..+  ....++|+.+++
T Consensus        45 L~~L~~L~l~~~~i~~--l~~-l~~l~~L~~L~L~~n~-i~~l~~~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l  119 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKS--VQG-IQYLPNVTKLFLNGNK-LTDIKPLANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSL  119 (210)
T ss_dssp             HHTCCEEECTTSCCCC--CTT-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEEC
T ss_pred             hcCccEEECcCCCCCC--chh-HhhCCCCCEEeCCCcc-ccCccccccCcccccccccccc-cccccccccccccccccc
Confidence            5688899998887754  111 5778999999998874 3333 25667889999988875 3222  224678888888


Q ss_pred             eCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec-ccc-cccceEEeecccCceeee
Q 036679           86 SSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK-ISS-PYLKKLLVRFCNKLYEFK  163 (294)
Q Consensus        86 ~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~-i~~-~~L~~L~l~~c~~l~~~~  163 (294)
                      .++.......+..+++++.+++.++.+++..   ..+.+++|+.++++++. ++.+. +.. ++|+.|++++|. +++++
T Consensus       120 ~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~---~~~~l~~L~~l~l~~n~-l~~i~~l~~l~~L~~L~Ls~N~-i~~l~  194 (210)
T d1h6ta2         120 EHNGISDINGLVHLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSKNH-ISDLR  194 (210)
T ss_dssp             TTSCCCCCGGGGGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCBCG
T ss_pred             ccccccccccccccccccccccccccccccc---ccccccccccccccccc-ccccccccCCCCCCEEECCCCC-CCCCh
Confidence            8887443344667788888888888776532   34568888988888764 44442 222 688888888874 55554


Q ss_pred             --ccCCCccEEEEcC
Q 036679          164 --LDTPNLSVFDYEG  176 (294)
Q Consensus       164 --~~~p~L~~l~~~g  176 (294)
                        ...++|+.|++++
T Consensus       195 ~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         195 ALAGLKNLDVLELFS  209 (210)
T ss_dssp             GGTTCTTCSEEEEEE
T ss_pred             hhcCCCCCCEEEccC
Confidence              2456777777654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=6.5e-11  Score=97.92  Aligned_cols=171  Identities=16%  Similarity=0.084  Sum_probs=111.0

Q ss_pred             CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec-cCCCCCccEEEccccC--CcccccccCC
Q 036679            2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE-FLNLGKLSKFMVRNED--RLARVSICGP   78 (294)
Q Consensus         2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~-~~~l~~L~~L~l~~c~--~l~~~~~~~~   78 (294)
                      +|..+  .+++++|+|++|.++. .....+.++++|++|+++++ .+..+. ...+++|++|+++++.  .........+
T Consensus        25 iP~~l--p~~l~~L~Ls~N~i~~-l~~~~f~~l~~L~~L~L~~N-~l~~l~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~  100 (266)
T d1p9ag_          25 LPPDL--PKDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRA-ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP  100 (266)
T ss_dssp             CCSCC--CTTCCEEECTTSCCSE-EEGGGGTTCTTCCEEECTTS-CCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCT
T ss_pred             eCcCc--CcCCCEEECcCCcCCC-cCHHHhhccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence            45443  2578899999888753 11234677888999999887 455553 3467888888888875  2222233467


Q ss_pred             cccEEEeeCCCCC--cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc----ccccceEE
Q 036679           79 NVRLVDISSLHAP--CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYLKKLL  152 (294)
Q Consensus        79 ~L~~L~l~~c~~~--~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~~L~  152 (294)
                      +|+.|+++++...  ....+..++++++|++.++.++.- ....+...+.|+.++++++ .++.+...    .++|++|+
T Consensus       101 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l-~~~~~~~l~~l~~l~l~~N-~l~~~~~~~~~~l~~L~~L~  178 (266)
T d1p9ag_         101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLL  178 (266)
T ss_dssp             TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEE
T ss_pred             ccccccccccccceeecccccccccccccccccccccee-ccccccccccchhcccccc-cccccCccccccccccceee
Confidence            8888888877632  123345677888888888776542 1234556788888888875 35554432    16788888


Q ss_pred             eecccCceeee---ccCCCccEEEEcCcee
Q 036679          153 VRFCNKLYEFK---LDTPNLSVFDYEGDMV  179 (294)
Q Consensus       153 l~~c~~l~~~~---~~~p~L~~l~~~g~~~  179 (294)
                      ++++. ++.++   ...++|+.+++.|++.
T Consensus       179 Ls~N~-L~~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         179 LQENS-LYTIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             CCSSC-CCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             cccCC-CcccChhHCCCCCCCEEEecCCCC
Confidence            88875 44554   3455677777777653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.16  E-value=1.3e-10  Score=92.68  Aligned_cols=142  Identities=16%  Similarity=0.176  Sum_probs=108.2

Q ss_pred             CCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccC--CcccccccCCccc
Q 036679            5 RNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNED--RLARVSICGPNVR   81 (294)
Q Consensus         5 ~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~   81 (294)
                      ++..+++|++|+|++|.+++  +.. ++.+++|++|++++|. ++.+ .+.++++|+.++++++.  .+..+ ...++++
T Consensus        63 ~l~~l~~L~~L~L~~n~i~~--l~~-~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l~~~~~~~~~~l-~~l~~l~  137 (210)
T d1h6ta2          63 GIQYLPNVTKLFLNGNKLTD--IKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHNGISDINGL-VHLPQLE  137 (210)
T ss_dssp             TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTSCCCCCGGG-GGCTTCC
T ss_pred             hHhhCCCCCEEeCCCccccC--ccc-cccCcccccccccccc-ccccccccccccccccccccccccccccc-ccccccc
Confidence            45679999999999999865  222 5789999999999884 5444 35678999999999886  22222 2467899


Q ss_pred             EEEeeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec-ccc-cccceEEeec
Q 036679           82 LVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK-ISS-PYLKKLLVRF  155 (294)
Q Consensus        82 ~L~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~-i~~-~~L~~L~l~~  155 (294)
                      .++++++.......+..+++|+++++.++.+++  +.. +.++++|+.|+++++ .++.++ +.. ++|++|++++
T Consensus       138 ~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~--i~~-l~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISD--IVP-LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             EEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC--CGG-GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccc--ccc-ccCCCCCCEEECCCC-CCCCChhhcCCCCCCEEEccC
Confidence            999998875444456788999999999998875  332 678999999999987 466664 333 7899999864

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.12  E-value=2.2e-11  Score=103.05  Aligned_cols=167  Identities=12%  Similarity=0.049  Sum_probs=107.6

Q ss_pred             CccEEEeeecccChH-HHHHHHhcCCCCCEEEEEcCCCCC-ee--ccCCCCCccEEEccccCC--c-ccccccCCcccEE
Q 036679           11 SLRELGLFKCAANDE-AIRDIVAGCPLIERLKIIDCRGLK-SL--EFLNLGKLSKFMVRNEDR--L-ARVSICGPNVRLV   83 (294)
Q Consensus        11 ~Lk~L~L~~~~~~~~-~l~~~~~~~~~Le~L~L~~c~~l~-~l--~~~~l~~L~~L~l~~c~~--l-~~~~~~~~~L~~L   83 (294)
                      +++.|+|+++.++.. .++..++.+++|++|++++|+.+. .+  .++++++|++|+++++.-  + .......++|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            689999999987542 345568899999999999876553 23  367789999999998852  1 1222346788999


Q ss_pred             EeeCCCC--CcccccccccccceEEecccccChHHHHHHhcCCCCC-cEEeecccccceeeccc---ccccceEEeeccc
Q 036679           84 DISSLHA--PCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFL-EYLEIFRCMKIRSIKIS---SPYLKKLLVRFCN  157 (294)
Q Consensus        84 ~l~~c~~--~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L-~~L~l~~c~~l~~l~i~---~~~L~~L~l~~c~  157 (294)
                      +++++..  ..+..+..++.++.++++++.+.+. ++..+..+..+ +.++++++ .++.....   ......+++..+.
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~-ip~~~~~l~~l~~~l~~~~n-~l~~~~~~~~~~l~~~~l~l~~~~  208 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGA-IPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANLNLAFVDLSRNM  208 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE-CCGGGGCCCTTCCEEECCSS-EEEEECCGGGGGCCCSEEECCSSE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccc-cccccccccccccccccccc-cccccccccccccccccccccccc
Confidence            9888762  2334577888999999998876643 34445556655 67777664 34332221   1244456655554


Q ss_pred             Cceeee---ccCCCccEEEEcCcee
Q 036679          158 KLYEFK---LDTPNLSVFDYEGDMV  179 (294)
Q Consensus       158 ~l~~~~---~~~p~L~~l~~~g~~~  179 (294)
                      ....++   ...++++.+.+.++..
T Consensus       209 ~~~~~~~~~~~~~~l~~l~~~~~~l  233 (313)
T d1ogqa_         209 LEGDASVLFGSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEE
T ss_pred             ccccccccccccccccccccccccc
Confidence            332222   2446677777666544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.04  E-value=9.1e-10  Score=95.03  Aligned_cols=178  Identities=17%  Similarity=0.197  Sum_probs=104.0

Q ss_pred             CCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccC--CcccccccCCcccE
Q 036679            6 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNED--RLARVSICGPNVRL   82 (294)
Q Consensus         6 ~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~   82 (294)
                      ...+++++.+.++++.+++-.  . ...+++|++|+++++. ++.+ .+..+++|+.++++++.  ++..+ ...++|+.
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~--~-~~~~~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~L~~  267 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDIT--P-LGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQISNLAPL-SGLTKLTE  267 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCG--G-GGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGGG-TTCTTCSE
T ss_pred             cccccccceeeccCCccCCCC--c-ccccCCCCEEECCCCC-CCCcchhhcccccchhccccCccCCCCcc-cccccCCE
Confidence            455778888888888765421  1 3567788888888774 3322 23456778888887765  22221 24577888


Q ss_pred             EEeeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec-ccc-cccceEEeecccCce
Q 036679           83 VDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK-ISS-PYLKKLLVRFCNKLY  160 (294)
Q Consensus        83 L~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~-i~~-~~L~~L~l~~c~~l~  160 (294)
                      |+++++.......+..++.++.+.+..+.+++-  . .+..+++++.|+++++ .++.+. +.. ++|++|++++|. ++
T Consensus       268 L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~--~-~~~~~~~l~~L~ls~n-~l~~l~~l~~l~~L~~L~L~~n~-l~  342 (384)
T d2omza2         268 LKLGANQISNISPLAGLTALTNLELNENQLEDI--S-PISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFANNK-VS  342 (384)
T ss_dssp             EECCSSCCCCCGGGTTCTTCSEEECCSSCCSCC--G-GGGGCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSSC-CC
T ss_pred             eeccCcccCCCCccccccccccccccccccccc--c-ccchhcccCeEECCCC-CCCCCcccccCCCCCEEECCCCC-CC
Confidence            888777643222344566667777666665541  1 2445677777777664 344432 222 567777777763 33


Q ss_pred             eee--ccCCCccEEEEcCceee---eecCccccceEEE
Q 036679          161 EFK--LDTPNLSVFDYEGDMVS---FSSNALALSETSL  193 (294)
Q Consensus       161 ~~~--~~~p~L~~l~~~g~~~~---~~~~~~~L~~~~i  193 (294)
                      .++  .+.|+|+.++++++.+.   .+.+.++|+.+++
T Consensus       343 ~l~~l~~l~~L~~L~l~~N~l~~l~~l~~l~~L~~L~L  380 (384)
T d2omza2         343 DVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGL  380 (384)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCBCGGGTTCTTCSEEEC
T ss_pred             CChhHcCCCCCCEEECCCCcCCCChhhccCCCCCEeeC
Confidence            332  24567777777766541   1334455666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=3.5e-10  Score=86.31  Aligned_cols=124  Identities=19%  Similarity=0.230  Sum_probs=89.4

Q ss_pred             CCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec-cCCCCCccEEEccccCCcccc----cccCCcc
Q 036679            6 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE-FLNLGKLSKFMVRNEDRLARV----SICGPNV   80 (294)
Q Consensus         6 ~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~-~~~l~~L~~L~l~~c~~l~~~----~~~~~~L   80 (294)
                      ..++.++|.|+|++|.++.  ++.+...+++|+.|+++++. +..+. +.++++|++|++++|. +..+    ...+++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N~-i~~l~~~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCCCCc--cCccccccccCCEEECCCCC-CCccCCcccCcchhhhhccccc-ccCCCcccccccccc
Confidence            3467789999999998854  23456788999999999984 55553 5678899999999886 3222    2247889


Q ss_pred             cEEEeeCCCCCc-c--cccccccccceEEecccccChHH--HHHHhcCCCCCcEEeec
Q 036679           81 RLVDISSLHAPC-G--INVALCKNLKELKLFKLSITNEW--LCNQFSELPFLEYLEIF  133 (294)
Q Consensus        81 ~~L~l~~c~~~~-~--~~~~~~~~L~~L~L~~~~i~~~~--l~~l~~~~~~L~~L~l~  133 (294)
                      +.|++++|.+.. +  ..+..+++|++++++++.+++..  -...+..+|+|+.||-.
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence            999999887432 1  24567888999999998775421  23456778888888743

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.7e-09  Score=95.13  Aligned_cols=76  Identities=13%  Similarity=0.065  Sum_probs=43.9

Q ss_pred             HHHHHHHhcCcccceeEEEeeeeee-----ecchhhhhccCCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCee
Q 036679          206 VKFIELLAKLNHCSNVLNLECYAAA-----IIPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETL  280 (294)
Q Consensus       206 ~~~~~~l~~l~~l~~LL~~~~~~~~-----~~p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l  280 (294)
                      ..+.+++...++|+.| +++.+...     .+++.+    ......|++|.|..+.. ...+ +..++..++.+|.|++|
T Consensus       330 ~~l~~~~~~~~~L~~L-~Ls~N~i~~~g~~~l~~~l----~~~~~~L~~L~Ls~n~i-~~~~-~~~l~~~l~~~~~L~~L  402 (460)
T d1z7xw1         330 SHFSSVLAQNRFLLEL-QISNNRLEDAGVRELCQGL----GQPGSVLRVLWLADCDV-SDSS-CSSLAATLLANHSLREL  402 (460)
T ss_dssp             HHHHHHHHHCSSCCEE-ECCSSBCHHHHHHHHHHHH----TSTTCCCCEEECTTSCC-CHHH-HHHHHHHHHHCCCCCEE
T ss_pred             hhcccccccccchhhh-heeeecccCcccchhhhhh----hcccCCCCEEECCCCCC-ChHH-HHHHHHHHhcCCCCCEE
Confidence            4455666777788884 66554321     122221    22235688888876433 2222 23445567888888888


Q ss_pred             EEeeCCCC
Q 036679          281 SIKCNDCD  288 (294)
Q Consensus       281 ~i~~~~~~  288 (294)
                      .|.....+
T Consensus       403 ~Ls~N~i~  410 (460)
T d1z7xw1         403 DLSNNCLG  410 (460)
T ss_dssp             ECCSSSCC
T ss_pred             ECCCCcCC
Confidence            88776543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=2.2e-09  Score=89.18  Aligned_cols=185  Identities=15%  Similarity=0.069  Sum_probs=123.2

Q ss_pred             CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccCCcccc---c-
Q 036679            2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARV---S-   74 (294)
Q Consensus         2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~~l~~~---~-   74 (294)
                      +|..+  .+++|+|+|++|.++. .....+.++++|++|+++++. +..+.   ..++..++.+.+.....+..+   . 
T Consensus        26 iP~~i--p~~~~~L~Ls~N~i~~-i~~~~f~~l~~L~~L~ls~n~-l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~  101 (284)
T d1ozna_          26 VPVGI--PAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF  101 (284)
T ss_dssp             CCTTC--CTTCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT
T ss_pred             cCCCC--CCCCCEEECcCCcCCC-CCHHHhhcccccccccccccc-ccccccccccccccccccccccccccccccchhh
Confidence            45443  3678999999998853 112346788999999998774 43332   234567777776655444333   1 


Q ss_pred             ccCCcccEEEeeCCCCC--cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc----cccc
Q 036679           75 ICGPNVRLVDISSLHAP--CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYL  148 (294)
Q Consensus        75 ~~~~~L~~L~l~~c~~~--~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L  148 (294)
                      ..+++|++|+++++...  ....+..+++|+.+++.++.++.. ....+..++.|+.|+++++ .++.+...    .++|
T Consensus       102 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i-~~~~f~~~~~L~~L~l~~N-~l~~l~~~~f~~l~~L  179 (284)
T d1ozna_         102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL-PDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSL  179 (284)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTC
T ss_pred             cccccCCEEecCCcccccccccccchhcccchhhhcccccccc-ChhHhccccchhhcccccC-cccccchhhhcccccc
Confidence            24578999999888742  223456678899999998887642 1334667889999999886 45655432    2689


Q ss_pred             ceEEeecccCceeee----ccCCCccEEEEcCcee-----eeecCccccceEEE
Q 036679          149 KKLLVRFCNKLYEFK----LDTPNLSVFDYEGDMV-----SFSSNALALSETSL  193 (294)
Q Consensus       149 ~~L~l~~c~~l~~~~----~~~p~L~~l~~~g~~~-----~~~~~~~~L~~~~i  193 (294)
                      +++++.++... .+.    ...++|++++++++.+     ..+...++|+.+.+
T Consensus       180 ~~l~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l  232 (284)
T d1ozna_         180 DRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL  232 (284)
T ss_dssp             CEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEEC
T ss_pred             chhhhhhcccc-ccChhHhhhhhhcccccccccccccccccccccccccCEEEe
Confidence            99998887644 332    2457888898887765     22445667887776

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.86  E-value=2.4e-09  Score=90.23  Aligned_cols=188  Identities=12%  Similarity=0.082  Sum_probs=112.7

Q ss_pred             CCCCCCCCCCccEEEeee-cccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCCccc---cc
Q 036679            2 SPTRNVTLSSLRELGLFK-CAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDRLAR---VS   74 (294)
Q Consensus         2 ~p~~~~~l~~Lk~L~L~~-~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~l~~---~~   74 (294)
                      +|..+.++++|++|+|++ +.+++ .++..++++++|++|+++++. +..+   .+..+++|+.++++.+.....   ..
T Consensus        68 lp~~l~~L~~L~~L~Ls~~N~l~g-~iP~~i~~L~~L~~L~Ls~N~-l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l  145 (313)
T d1ogqa_          68 IPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTN-VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI  145 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEES-CCCGGGGGCTTCSEEEEEEEC-CEEECCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred             CChHHhcCcccccccccccccccc-ccccccccccccchhhhcccc-ccccccccccchhhhcccccccccccccCchhh
Confidence            688899999999999997 45643 244457899999999999985 2222   244567899999988752221   12


Q ss_pred             ccCCcccEEEeeCCCCC--ccccccccccc-ceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc---cccc
Q 036679           75 ICGPNVRLVDISSLHAP--CGINVALCKNL-KELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS---SPYL  148 (294)
Q Consensus        75 ~~~~~L~~L~l~~c~~~--~~~~~~~~~~L-~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~---~~~L  148 (294)
                      ...+.++.++++++...  .+..+..+..+ +.+.+.++.+++. ....+.+. ....+++.++.....++..   .+++
T Consensus       146 ~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~-~~~~~~~l-~~~~l~l~~~~~~~~~~~~~~~~~~l  223 (313)
T d1ogqa_         146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK-IPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNT  223 (313)
T ss_dssp             GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE-CCGGGGGC-CCSEEECCSSEEEECCGGGCCTTSCC
T ss_pred             ccCcccceeecccccccccccccccccccccccccccccccccc-cccccccc-cccccccccccccccccccccccccc
Confidence            25678999999888642  22334444444 6777777766543 12223332 3335666654433222221   1467


Q ss_pred             ceEEeecccCceeee--ccCCCccEEEEcCcee-----eeecCccccceEEE
Q 036679          149 KKLLVRFCNKLYEFK--LDTPNLSVFDYEGDMV-----SFSSNALALSETSL  193 (294)
Q Consensus       149 ~~L~l~~c~~l~~~~--~~~p~L~~l~~~g~~~-----~~~~~~~~L~~~~i  193 (294)
                      +.+++.++.....++  ...++|+.|+++++..     ..+...++|+.+++
T Consensus       224 ~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~L  275 (313)
T d1ogqa_         224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV  275 (313)
T ss_dssp             SEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEEC
T ss_pred             cccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEEC
Confidence            777776665322222  2345677777776644     12334456666666

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=3.4e-09  Score=87.30  Aligned_cols=148  Identities=14%  Similarity=0.064  Sum_probs=108.1

Q ss_pred             CCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee--ccCCCCCccEEEccccCC--ccc-ccccCC
Q 036679            4 TRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL--EFLNLGKLSKFMVRNEDR--LAR-VSICGP   78 (294)
Q Consensus         4 ~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l--~~~~l~~L~~L~l~~c~~--l~~-~~~~~~   78 (294)
                      ..+..+++|++|+|++|.++.  ++ ..+.+++|++|+++++. +...  .+.++++|+.|+++++..  +.. .....+
T Consensus        49 ~~f~~l~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~  124 (266)
T d1p9ag_          49 ATLMPYTRLTQLNLDRAELTK--LQ-VDGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG  124 (266)
T ss_dssp             GGGTTCTTCCEEECTTSCCCE--EE-CCSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT
T ss_pred             HHhhccccccccccccccccc--cc-ccccccccccccccccc-ccccccccccccccccccccccccceeecccccccc
Confidence            446789999999999998864  22 13678999999999985 3221  245678999999998762  211 123457


Q ss_pred             cccEEEeeCCCCC--cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccc---cccceEEe
Q 036679           79 NVRLVDISSLHAP--CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISS---PYLKKLLV  153 (294)
Q Consensus        79 ~L~~L~l~~c~~~--~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~---~~L~~L~l  153 (294)
                      +++.|++.++...  .+..+..+++++.++++++.+++. ....+..+++|++|+++++. ++.++...   ++|++|++
T Consensus       125 ~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-L~~lp~~~~~~~~L~~L~L  202 (266)
T d1p9ag_         125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFL  202 (266)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEEC
T ss_pred             ccccccccccccceeccccccccccchhccccccccccc-CccccccccccceeecccCC-CcccChhHCCCCCCCEEEe
Confidence            8999999988732  223456788999999999987753 23446779999999999854 77765332   68999999


Q ss_pred             eccc
Q 036679          154 RFCN  157 (294)
Q Consensus       154 ~~c~  157 (294)
                      ++.+
T Consensus       203 ~~Np  206 (266)
T d1p9ag_         203 HGNP  206 (266)
T ss_dssp             CSCC
T ss_pred             cCCC
Confidence            8754

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.82  E-value=3.3e-09  Score=88.98  Aligned_cols=172  Identities=19%  Similarity=0.120  Sum_probs=106.3

Q ss_pred             CC-CCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEcc---------------
Q 036679            2 SP-TRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVR---------------   65 (294)
Q Consensus         2 ~p-~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~---------------   65 (294)
                      +| ..+.++++|++|++++|.+..- .+..+.+++.|+.|+++++. ++.+.-...+.++.+...               
T Consensus        46 l~~~~f~~l~~L~~L~l~~n~~~~i-~~~~f~~l~~L~~L~l~~n~-l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~  123 (305)
T d1xkua_          46 IKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLYLSKNQ-LKELPEKMPKTLQELRVHENEITKVRKSVFNGL  123 (305)
T ss_dssp             BCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSC-CSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTC
T ss_pred             cChhHhhcccccccccccccccccc-chhhhhCCCccCEecccCCc-cCcCccchhhhhhhhhccccchhhhhhhhhhcc
Confidence            45 3567899999999999987531 13347789999999999874 333322222333333332               


Q ss_pred             ---------ccCC-ccc----ccccCCcccEEEeeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEe
Q 036679           66 ---------NEDR-LAR----VSICGPNVRLVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLE  131 (294)
Q Consensus        66 ---------~c~~-l~~----~~~~~~~L~~L~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~  131 (294)
                               .+.. ...    .....++|+.++++++.... .....+++|++|++.++..+.. ....+.+++.++.|+
T Consensus       124 ~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~l~~L~  201 (305)
T d1xkua_         124 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLPPSLTELHLDGNKITKV-DAASLKGLNNLAKLG  201 (305)
T ss_dssp             TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCCTTCSEEECTTSCCCEE-CTGGGTTCTTCCEEE
T ss_pred             ccccccccccccccccCCCccccccccccCccccccCCccc-cCcccCCccCEEECCCCcCCCC-ChhHhhccccccccc
Confidence                     2210 000    01134678888888776321 1123467888888888765543 234467788888888


Q ss_pred             ecccccceeeccc----ccccceEEeecccCceeee---ccCCCccEEEEcCcee
Q 036679          132 IFRCMKIRSIKIS----SPYLKKLLVRFCNKLYEFK---LDTPNLSVFDYEGDMV  179 (294)
Q Consensus       132 l~~c~~l~~l~i~----~~~L~~L~l~~c~~l~~~~---~~~p~L~~l~~~g~~~  179 (294)
                      ++++ .++.+...    .++|++|++++|. ++.++   .+.++|+.++++++.+
T Consensus       202 ~s~n-~l~~~~~~~~~~l~~L~~L~L~~N~-L~~lp~~l~~l~~L~~L~Ls~N~i  254 (305)
T d1xkua_         202 LSFN-SISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNI  254 (305)
T ss_dssp             CCSS-CCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCC
T ss_pred             cccc-cccccccccccccccceeeeccccc-ccccccccccccCCCEEECCCCcc
Confidence            8875 34554322    2688888888884 44443   2467888888887754

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.2e-08  Score=84.74  Aligned_cols=173  Identities=16%  Similarity=0.070  Sum_probs=124.2

Q ss_pred             CCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCC--cccc-cccC
Q 036679            4 TRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDR--LARV-SICG   77 (294)
Q Consensus         4 ~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~--l~~~-~~~~   77 (294)
                      ..+..+++|++|+++++.+..- .......++.++++.......+..+   .+.++++|++|+++++..  +... ....
T Consensus        50 ~~f~~l~~L~~L~ls~n~l~~i-~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  128 (284)
T d1ozna_          50 ASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL  128 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred             HHhhcccccccccccccccccc-ccccccccccccccccccccccccccchhhcccccCCEEecCCcccccccccccchh
Confidence            3567899999999999987541 1234567889999988777666554   356788999999998862  2221 2245


Q ss_pred             CcccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc---c-cccceE
Q 036679           78 PNVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS---S-PYLKKL  151 (294)
Q Consensus        78 ~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~---~-~~L~~L  151 (294)
                      ++|+.+++.++.+..  +..+..+++|+.|++.++.++.- ....+.++++|+.++++++. ++.+...   . ++|++|
T Consensus       129 ~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l-~~~~f~~l~~L~~l~l~~N~-l~~i~~~~f~~l~~L~~L  206 (284)
T d1ozna_         129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-PERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTL  206 (284)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEE
T ss_pred             cccchhhhccccccccChhHhccccchhhcccccCccccc-chhhhccccccchhhhhhcc-ccccChhHhhhhhhcccc
Confidence            789999999987432  23466788999999999987642 23456789999999999865 4444321   1 689999


Q ss_pred             EeecccCceeee---ccCCCccEEEEcCcee
Q 036679          152 LVRFCNKLYEFK---LDTPNLSVFDYEGDMV  179 (294)
Q Consensus       152 ~l~~c~~l~~~~---~~~p~L~~l~~~g~~~  179 (294)
                      +++++...+..+   .+.++|+.++++|++.
T Consensus       207 ~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         207 YLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             ECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             cccccccccccccccccccccCEEEecCCCC
Confidence            999987443211   3678999999998865

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.68  E-value=1e-08  Score=74.22  Aligned_cols=113  Identities=18%  Similarity=0.147  Sum_probs=67.9

Q ss_pred             cEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee--ccCCCCCccEEEccccC--CcccccccCCcccEEEeeCC
Q 036679           13 RELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL--EFLNLGKLSKFMVRNED--RLARVSICGPNVRLVDISSL   88 (294)
Q Consensus        13 k~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l--~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~~c   88 (294)
                      |.|+|+++.+++  ++. ++.+++|++|+++++. ++.+  .++.+++|+.|+++++.  .+..+ ..+++|++++++++
T Consensus         1 R~L~Ls~n~l~~--l~~-l~~l~~L~~L~ls~N~-l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~-~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALENVDGV-ANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSS--CCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCCCCGGG-TTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCC--Ccc-cccCCCCCEEECCCCc-cCcchhhhhhhhcccccccccccccccCcc-ccccccCeEECCCC
Confidence            578888887753  222 5677888888888763 4444  24566777788777764  22221 24567777777777


Q ss_pred             CCC-c--ccccccccccceEEecccccChHH--HHHHhcCCCCCcEE
Q 036679           89 HAP-C--GINVALCKNLKELKLFKLSITNEW--LCNQFSELPFLEYL  130 (294)
Q Consensus        89 ~~~-~--~~~~~~~~~L~~L~L~~~~i~~~~--l~~l~~~~~~L~~L  130 (294)
                      ... .  ...+..+++|+.++++++.+++..  ...+...+|+|+.|
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            632 1  123566777777777777665311  22334446666654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=1.3e-07  Score=76.07  Aligned_cols=173  Identities=18%  Similarity=0.126  Sum_probs=98.3

Q ss_pred             CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccCCccccc----
Q 036679            2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARVS----   74 (294)
Q Consensus         2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~~l~~~~----   74 (294)
                      +|..+  ++++++|+|+++.++. .....+.++++|++|+++++.....+.   +.+++.++++.+..+..+....    
T Consensus        23 iP~~l--~~~l~~L~Ls~n~i~~-l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~   99 (242)
T d1xwdc1          23 IPSDL--PRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF   99 (242)
T ss_dssp             CCSCS--CSCCSEEEEESCCCCE-ECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSE
T ss_pred             cCCCC--CCCCCEEECcCCcCCc-cChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccc
Confidence            45433  3588999999888742 112235778999999999887555443   3456788888877665443321    


Q ss_pred             ccCCcccEEEeeCCCCCcccccccccc---cceEEecccccChHHHHHHhcCC-CCCcEEeecccccceeecccc---cc
Q 036679           75 ICGPNVRLVDISSLHAPCGINVALCKN---LKELKLFKLSITNEWLCNQFSEL-PFLEYLEIFRCMKIRSIKISS---PY  147 (294)
Q Consensus        75 ~~~~~L~~L~l~~c~~~~~~~~~~~~~---L~~L~L~~~~i~~~~l~~l~~~~-~~L~~L~l~~c~~l~~l~i~~---~~  147 (294)
                      ..+++|+.+++.++..........+.+   ++.+...++.+..-. ...+.++ ..++.|++.+ ..++.+....   .+
T Consensus       100 ~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~-~~~~~~~~~~l~~L~l~~-n~l~~i~~~~~~~~~  177 (242)
T d1xwdc1         100 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE-RNSFVGLSFESVILWLNK-NGIQEIHNCAFNGTQ  177 (242)
T ss_dssp             ECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEEC-TTSSTTSBSSCEEEECCS-SCCCEECTTTTTTCC
T ss_pred             cccccccccccchhhhccccccccccccccccccccccccccccc-ccccccccccceeeeccc-ccccccccccccchh
Confidence            246788888888876432222223333   333333433333211 1112223 3677777765 3355443322   45


Q ss_pred             cceEEeecccCceeeec----cCCCccEEEEcCcee
Q 036679          148 LKKLLVRFCNKLYEFKL----DTPNLSVFDYEGDMV  179 (294)
Q Consensus       148 L~~L~l~~c~~l~~~~~----~~p~L~~l~~~g~~~  179 (294)
                      ++.+....+..+++++.    +.++|+.++++++.+
T Consensus       178 l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l  213 (242)
T d1xwdc1         178 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI  213 (242)
T ss_dssp             EEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCC
T ss_pred             hhccccccccccccccHHHhcCCCCCCEEECCCCcC
Confidence            55555555555666542    357788888777654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.64  E-value=3.1e-08  Score=84.34  Aligned_cols=38  Identities=24%  Similarity=0.129  Sum_probs=23.6

Q ss_pred             CCCccEEEeeecccChHHHHHH---HhcCCCCCEEEEEcCC
Q 036679            9 LSSLRELGLFKCAANDEAIRDI---VAGCPLIERLKIIDCR   46 (294)
Q Consensus         9 l~~Lk~L~L~~~~~~~~~l~~~---~~~~~~Le~L~L~~c~   46 (294)
                      ..+|+.|+|++|.++++++..+   +...++|+.|+++++.
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~   70 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIF   70 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCC
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCc
Confidence            5667777777777766554443   3445667777766553

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.50  E-value=3.2e-07  Score=77.86  Aligned_cols=169  Identities=17%  Similarity=0.209  Sum_probs=104.1

Q ss_pred             CCCccEEEeeecccCh---HHHHHHHhcCCCCCEEEEEcCCC-----------CCeec----cCCCCCccEEEccccC-C
Q 036679            9 LSSLRELGLFKCAAND---EAIRDIVAGCPLIERLKIIDCRG-----------LKSLE----FLNLGKLSKFMVRNED-R   69 (294)
Q Consensus         9 l~~Lk~L~L~~~~~~~---~~l~~~~~~~~~Le~L~L~~c~~-----------l~~l~----~~~l~~L~~L~l~~c~-~   69 (294)
                      +++|+.|+|++|.+++   ..+...+..+++|++|++++|.-           +..+.    ..+.+.|+.+.++++. .
T Consensus        92 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~  171 (344)
T d2ca6a1          92 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE  171 (344)
T ss_dssp             CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred             CCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccc
Confidence            4566666666665544   23334445566666666665531           00000    0123566777666543 1


Q ss_pred             ---cccc---cccCCcccEEEeeCCCCCcc-------cccccccccceEEecccccChHH---HHHHhcCCCCCcEEeec
Q 036679           70 ---LARV---SICGPNVRLVDISSLHAPCG-------INVALCKNLKELKLFKLSITNEW---LCNQFSELPFLEYLEIF  133 (294)
Q Consensus        70 ---l~~~---~~~~~~L~~L~l~~c~~~~~-------~~~~~~~~L~~L~L~~~~i~~~~---l~~l~~~~~~L~~L~l~  133 (294)
                         ...+   ....++|+.|++++|.....       ..+..+++|+.|+++++.+++.+   +...+..+++|++|+++
T Consensus       172 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls  251 (344)
T d2ca6a1         172 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN  251 (344)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred             ccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhh
Confidence               1111   11357899999998874321       12456789999999999887754   44557789999999999


Q ss_pred             cccccee-----ec-----ccccccceEEeecccCcee---------eeccCCCccEEEEcCcee
Q 036679          134 RCMKIRS-----IK-----ISSPYLKKLLVRFCNKLYE---------FKLDTPNLSVFDYEGDMV  179 (294)
Q Consensus       134 ~c~~l~~-----l~-----i~~~~L~~L~l~~c~~l~~---------~~~~~p~L~~l~~~g~~~  179 (294)
                      +|. +..     +.     ...++|++|+++++. ++.         +.-+.++|+.+++.|+..
T Consensus       252 ~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         252 DCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             TCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             cCc-cCchhhHHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence            985 322     11     112579999999886 321         112578999999998754

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.48  E-value=2.3e-07  Score=66.91  Aligned_cols=95  Identities=16%  Similarity=0.081  Sum_probs=48.5

Q ss_pred             EEEEEcCCCCCee-ccCCCCCccEEEccccC--CcccccccCCcccEEEeeCCCCCcccccccccccceEEecccccChH
Q 036679           39 RLKIIDCRGLKSL-EFLNLGKLSKFMVRNED--RLARVSICGPNVRLVDISSLHAPCGINVALCKNLKELKLFKLSITNE  115 (294)
Q Consensus        39 ~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~  115 (294)
                      .|+++++. +..+ .+.++++|++|+++++.  .+.......++|+.|+++++.+.....+..+++|++++++++.+++-
T Consensus         2 ~L~Ls~n~-l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~~~   80 (124)
T d1dcea3           2 VLHLAHKD-LTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQS   80 (124)
T ss_dssp             EEECTTSC-CSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSS
T ss_pred             EEEcCCCC-CCCCcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCccccccccCeEECCCCccCCC
Confidence            45665553 2222 13455667777776654  22111123556666666666533223355566666666666665432


Q ss_pred             HHHHHhcCCCCCcEEeecc
Q 036679          116 WLCNQFSELPFLEYLEIFR  134 (294)
Q Consensus       116 ~l~~l~~~~~~L~~L~l~~  134 (294)
                      .-...+..+++|+.|++++
T Consensus        81 ~~~~~l~~~~~L~~L~l~~   99 (124)
T d1dcea3          81 AAIQPLVSCPRLVLLNLQG   99 (124)
T ss_dssp             STTGGGGGCTTCCEEECTT
T ss_pred             CCchhhcCCCCCCEEECCC
Confidence            1112244566666666665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.47  E-value=1.1e-08  Score=80.41  Aligned_cols=126  Identities=13%  Similarity=0.080  Sum_probs=76.1

Q ss_pred             CCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccC--CcccccccCCcccEEEee
Q 036679           10 SSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNED--RLARVSICGPNVRLVDIS   86 (294)
Q Consensus        10 ~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~   86 (294)
                      ..++.+++.+..-.-+.+...++.+++|++|+++++. ++.+ .+.++++|++|++++|.  .+..+....++|+.|+++
T Consensus        23 ~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~-I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~  101 (198)
T d1m9la_          23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS  101 (198)
T ss_dssp             TTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEE-ESCCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECS
T ss_pred             cccceeeeecccCchhhhhhHHhcccccceeECcccC-CCCcccccCCccccChhhcccccccccccccccccccccccc
Confidence            3455566655311112333446777888888887763 3222 13456788888888774  222222234578888887


Q ss_pred             CCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccc
Q 036679           87 SLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCM  136 (294)
Q Consensus        87 ~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~  136 (294)
                      +|.......+..+++|+.|+++++.+++-.-...+..+++|+.|++++++
T Consensus       102 ~N~i~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         102 YNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             EEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             cccccccccccccccccccccccchhccccccccccCCCccceeecCCCc
Confidence            77644323456677888888888877653212345678888888888754

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.34  E-value=2.2e-07  Score=72.20  Aligned_cols=36  Identities=14%  Similarity=0.079  Sum_probs=16.7

Q ss_pred             CCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcC
Q 036679           10 SSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDC   45 (294)
Q Consensus        10 ~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c   45 (294)
                      +++++|+|++|.++.......+.++++|+.|+++++
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N   64 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN   64 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeecccc
Confidence            455555555555532111222344555555555544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=2.2e-06  Score=74.57  Aligned_cols=178  Identities=13%  Similarity=0.024  Sum_probs=103.1

Q ss_pred             cccccceEEecccccChHHHH---HHhcCCCCCcEEeeccccccee-----e----cccccccceEEeecccCce-----
Q 036679           98 LCKNLKELKLFKLSITNEWLC---NQFSELPFLEYLEIFRCMKIRS-----I----KISSPYLKKLLVRFCNKLY-----  160 (294)
Q Consensus        98 ~~~~L~~L~L~~~~i~~~~l~---~l~~~~~~L~~L~l~~c~~l~~-----l----~i~~~~L~~L~l~~c~~l~-----  160 (294)
                      ....++.++++++.+......   ..+...+.++.++++++. +..     +    .....+|+.+.+.+|..-.     
T Consensus       253 ~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~-i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~  331 (460)
T d1z7xw1         253 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH  331 (460)
T ss_dssp             TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccc-ccccccchhhccccccccccccccccccchhhhhhhh
Confidence            356799999999887764332   334567899999998754 221     1    1122579999998886321     


Q ss_pred             --eeeccCCCccEEEEcCceee-----ee-----cCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEEeeee
Q 036679          161 --EFKLDTPNLSVFDYEGDMVS-----FS-----SNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYA  228 (294)
Q Consensus       161 --~~~~~~p~L~~l~~~g~~~~-----~~-----~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~~  228 (294)
                        ......++|+.|+++++.+.     .+     ...+.|+.+.+.-..  ....-...+.+.+...++|+.| +++.+.
T Consensus       332 l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~--i~~~~~~~l~~~l~~~~~L~~L-~Ls~N~  408 (460)
T d1z7xw1         332 FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD--VSDSSCSSLAATLLANHSLREL-DLSNNC  408 (460)
T ss_dssp             HHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC--CCHHHHHHHHHHHHHCCCCCEE-ECCSSS
T ss_pred             cccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCC--CChHHHHHHHHHHhcCCCCCEE-ECCCCc
Confidence              11235678999999887651     11     123457777662111  1222223455566777888884 666553


Q ss_pred             eee-cchhhhhccCCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeE
Q 036679          229 AAI-IPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLS  281 (294)
Q Consensus       229 ~~~-~p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~  281 (294)
                      ... -...+.+.....-..|+.|.+..+..  .......+..+.+.=|+|+.++
T Consensus       409 i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~--~~~~~~~l~~l~~~~~~l~~~~  460 (460)
T d1z7xw1         409 LGDAGILQLVESVRQPGCLLEQLVLYDIYW--SEEMEDRLQALEKDKPSLRVIS  460 (460)
T ss_dssp             CCHHHHHHHHHHHTSTTCCCCEEECTTCCC--CHHHHHHHHHHHHHCTTSEEEC
T ss_pred             CCHHHHHHHHHHHHhCCCccCEEECCCCCC--CHHHHHHHHHHHHhCCCCEEeC
Confidence            321 01111111122224688888876433  2334566777888888888763

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=3.4e-07  Score=69.19  Aligned_cols=12  Identities=8%  Similarity=-0.053  Sum_probs=5.9

Q ss_pred             CCCCCEEEEEcC
Q 036679           34 CPLIERLKIIDC   45 (294)
Q Consensus        34 ~~~Le~L~L~~c   45 (294)
                      +..+++|+++++
T Consensus        17 ~~~lr~L~L~~n   28 (162)
T d1a9na_          17 AVRDRELDLRGY   28 (162)
T ss_dssp             TTSCEEEECTTS
T ss_pred             cCcCcEEECCCC
Confidence            344555555544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.4e-06  Score=69.84  Aligned_cols=169  Identities=12%  Similarity=0.060  Sum_probs=102.9

Q ss_pred             CCC-CCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccCCcccc--cc
Q 036679            2 SPT-RNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARV--SI   75 (294)
Q Consensus         2 ~p~-~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~~l~~~--~~   75 (294)
                      +|. .+.++++||+|++++|.+.+......+.+++.++++.+..+.++....   +.++++|++++++++. +...  ..
T Consensus        44 l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~  122 (242)
T d1xwdc1          44 IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVH  122 (242)
T ss_dssp             ECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCC-CCSCCCCT
T ss_pred             cChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhh-hccccccc
Confidence            343 457799999999999976442112236778999999999888776654   3467899999999874 2221  11


Q ss_pred             cCCcccEE---EeeCCCCCc--ccccccc-cccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc----c
Q 036679           76 CGPNVRLV---DISSLHAPC--GINVALC-KNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----S  145 (294)
Q Consensus        76 ~~~~L~~L---~l~~c~~~~--~~~~~~~-~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~  145 (294)
                      ...+++.+   .........  ...+.++ ..++.+++.++.++.  +.....+.+.++.+....+..++.++..    .
T Consensus       123 ~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~--i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l  200 (242)
T d1xwdc1         123 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE--IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGA  200 (242)
T ss_dssp             TTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE--ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTS
T ss_pred             ccccccccccccccccccccccccccccccccceeeecccccccc--cccccccchhhhccccccccccccccHHHhcCC
Confidence            22334433   333332211  1223333 467888888877654  2222234566666666566677776542    2


Q ss_pred             cccceEEeecccCceeeecc-CCCccEEEE
Q 036679          146 PYLKKLLVRFCNKLYEFKLD-TPNLSVFDY  174 (294)
Q Consensus       146 ~~L~~L~l~~c~~l~~~~~~-~p~L~~l~~  174 (294)
                      ++|++|+++++. ++.++.. ..++..|++
T Consensus       201 ~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~  229 (242)
T d1xwdc1         201 SGPVILDISRTR-IHSLPSYGLENLKKLRA  229 (242)
T ss_dssp             CCCSEEECTTSC-CCCCCSSSCTTCCEEES
T ss_pred             CCCCEEECCCCc-CCccCHHHHcCCccccc
Confidence            789999998876 4455432 344544443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.20  E-value=1.7e-08  Score=79.28  Aligned_cols=122  Identities=20%  Similarity=0.212  Sum_probs=85.7

Q ss_pred             CCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec--cCCCCCccEEEccccCCcccc--cccCCcc
Q 036679            5 RNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE--FLNLGKLSKFMVRNEDRLARV--SICGPNV   80 (294)
Q Consensus         5 ~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~--~~~l~~L~~L~l~~c~~l~~~--~~~~~~L   80 (294)
                      .+..+++|++|+|++|.+++  +.. +.++++|+.|++++|. +..+.  ...+++|+.|+++++. +..+  ...+++|
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~--i~~-l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N~-i~~l~~~~~l~~L  117 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEK--ISS-LSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLSGIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESC--CCC-HHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEEE-CCCHHHHHHHHHS
T ss_pred             HHhcccccceeECcccCCCC--ccc-ccCCccccChhhcccc-ccccccccccccccccccccccc-ccccccccccccc
Confidence            35568999999999999864  222 5678999999999884 33221  1223679999999874 3332  1246789


Q ss_pred             cEEEeeCCCCCc-c--cccccccccceEEecccccChHH---------HHHHhcCCCCCcEEe
Q 036679           81 RLVDISSLHAPC-G--INVALCKNLKELKLFKLSITNEW---------LCNQFSELPFLEYLE  131 (294)
Q Consensus        81 ~~L~l~~c~~~~-~--~~~~~~~~L~~L~L~~~~i~~~~---------l~~l~~~~~~L~~L~  131 (294)
                      +.|++++|.+.. +  ..+..+++|+.|+++++.+....         ...++..+|+|+.||
T Consensus       118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            999999987532 1  24678899999999998764321         123466788998887

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.16  E-value=8.1e-06  Score=68.46  Aligned_cols=34  Identities=9%  Similarity=0.219  Sum_probs=26.0

Q ss_pred             CCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCC
Q 036679           10 SSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCR   46 (294)
Q Consensus        10 ~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~   46 (294)
                      ++|++|++++|.+..  ++. .+.+++|+.|+++++.
T Consensus        98 ~~L~~L~L~~n~l~~--lp~-~~~l~~L~~L~l~~~~  131 (353)
T d1jl5a_          98 PLLEYLGVSNNQLEK--LPE-LQNSSFLKIIDVDNNS  131 (353)
T ss_dssp             TTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSC
T ss_pred             ccccccccccccccc--ccc-hhhhccceeecccccc
Confidence            469999999998743  222 4678899999998775

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.92  E-value=6.2e-06  Score=63.69  Aligned_cols=99  Identities=15%  Similarity=0.102  Sum_probs=48.2

Q ss_pred             CCCCEEEEEcCCCCC---eeccCCCCCccEEEccccCC--cc-cccccCCcccEEEeeCCCCCc--ccccccccccceEE
Q 036679           35 PLIERLKIIDCRGLK---SLEFLNLGKLSKFMVRNEDR--LA-RVSICGPNVRLVDISSLHAPC--GINVALCKNLKELK  106 (294)
Q Consensus        35 ~~Le~L~L~~c~~l~---~l~~~~l~~L~~L~l~~c~~--l~-~~~~~~~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~  106 (294)
                      +++++|+|+++.--.   .-.+.++++|++|+++++.-  +. ......++|+.|+++++.+..  +..+.++++|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            456677776654211   11223456666666665541  11 111234556666666665321  12345556666666


Q ss_pred             ecccccChHHHHHHhcCCCCCcEEeecc
Q 036679          107 LFKLSITNEWLCNQFSELPFLEYLEIFR  134 (294)
Q Consensus       107 L~~~~i~~~~l~~l~~~~~~L~~L~l~~  134 (294)
                      |+++.++.- .+..+...++|++|++++
T Consensus       109 L~~N~l~~i-~~~~f~~l~~L~~l~L~~  135 (192)
T d1w8aa_         109 LYDNQISCV-MPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             CCSSCCCEE-CTTSSTTCTTCCEEECTT
T ss_pred             cCCcccccc-CHHHhcCCcccccccccc
Confidence            666654431 122344455666666554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.86  E-value=5.3e-05  Score=63.23  Aligned_cols=96  Identities=19%  Similarity=0.115  Sum_probs=60.1

Q ss_pred             CCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCCcccccccCCcccEEEeeCCC
Q 036679           10 SSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVSICGPNVRLVDISSLH   89 (294)
Q Consensus        10 ~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~c~   89 (294)
                      .++++|+|+++.++.  ++   ...|+|++|+++++ .++.++ ....+|++|++.++. +..+....+.|++|+++++.
T Consensus        38 ~~l~~LdLs~~~L~~--lp---~~~~~L~~L~Ls~N-~l~~lp-~~~~~L~~L~l~~n~-l~~l~~lp~~L~~L~L~~n~  109 (353)
T d1jl5a_          38 RQAHELELNNLGLSS--LP---ELPPHLESLVASCN-SLTELP-ELPQSLKSLLVDNNN-LKALSDLPPLLEYLGVSNNQ  109 (353)
T ss_dssp             HTCSEEECTTSCCSC--CC---SCCTTCSEEECCSS-CCSSCC-CCCTTCCEEECCSSC-CSCCCSCCTTCCEEECCSSC
T ss_pred             cCCCEEEeCCCCCCC--CC---CCCCCCCEEECCCC-CCcccc-cchhhhhhhhhhhcc-cchhhhhccccccccccccc
Confidence            357888888887642  22   23567888888754 565554 224678888887764 22332233568888888776


Q ss_pred             CCcccccccccccceEEecccccC
Q 036679           90 APCGINVALCKNLKELKLFKLSIT  113 (294)
Q Consensus        90 ~~~~~~~~~~~~L~~L~L~~~~i~  113 (294)
                      ......++.+++|+.+++.++.+.
T Consensus       110 l~~lp~~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         110 LEKLPELQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             CSSCCCCTTCTTCCEEECCSSCCS
T ss_pred             cccccchhhhccceeecccccccc
Confidence            432223456778888888776544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.63  E-value=5.6e-05  Score=56.80  Aligned_cols=110  Identities=15%  Similarity=0.137  Sum_probs=52.7

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCCCCe-----e--ccCCCCCccEEEccccC-C---cccc---cccCCcccEEEeeCCCC
Q 036679           25 EAIRDIVAGCPLIERLKIIDCRGLKS-----L--EFLNLGKLSKFMVRNED-R---LARV---SICGPNVRLVDISSLHA   90 (294)
Q Consensus        25 ~~l~~~~~~~~~Le~L~L~~c~~l~~-----l--~~~~l~~L~~L~l~~c~-~---l~~~---~~~~~~L~~L~l~~c~~   90 (294)
                      +.+.++..+.|.|++|+|+++..+..     +  .+...++|++|++++|. +   ...+   ....++|+.|++++|.+
T Consensus         5 ~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i   84 (167)
T d1pgva_           5 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL   84 (167)
T ss_dssp             HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred             HHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhc
Confidence            44555555566666666655433211     1  12223455555555543 0   0011   11235566666666653


Q ss_pred             Ccc------cccccccccceEEecccc---cChH---HHHHHhcCCCCCcEEeecc
Q 036679           91 PCG------INVALCKNLKELKLFKLS---ITNE---WLCNQFSELPFLEYLEIFR  134 (294)
Q Consensus        91 ~~~------~~~~~~~~L~~L~L~~~~---i~~~---~l~~l~~~~~~L~~L~l~~  134 (294)
                      ...      ..+...++|++|++.++.   ++++   .+...+...+.|+.|+++.
T Consensus        85 ~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_          85 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  140 (167)
T ss_dssp             CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             chHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcC
Confidence            211      123444667777776553   3222   2444455566777776654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=7e-05  Score=55.60  Aligned_cols=102  Identities=20%  Similarity=0.160  Sum_probs=67.2

Q ss_pred             CCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccCCcccc----cccCCccc
Q 036679            9 LSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARV----SICGPNVR   81 (294)
Q Consensus         9 l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~~l~~~----~~~~~~L~   81 (294)
                      +.....++..+..+.+  .+.-+.+.++|++|++.+...++.+.   +.++++|+.|+++++. +..+    ....++|+
T Consensus         7 c~~~~~l~c~~~~~~~--~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~   83 (156)
T d2ifga3           7 PHGSSGLRCTRDGALD--SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLS   83 (156)
T ss_dssp             CSSSSCEECCSSCCCT--TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCC
T ss_pred             cCCCCeEEecCCCCcc--CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccc-cCCccccccccccccc
Confidence            3445567776665532  12225667888999988777777664   5667899999998875 3332    22468899


Q ss_pred             EEEeeCCCCCc-ccccccccccceEEecccccC
Q 036679           82 LVDISSLHAPC-GINVALCKNLKELKLFKLSIT  113 (294)
Q Consensus        82 ~L~l~~c~~~~-~~~~~~~~~L~~L~L~~~~i~  113 (294)
                      +|+++++.+.. +.......+|+.|+|+++.+.
T Consensus        84 ~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          84 RLNLSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             EEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ceeccCCCCcccChhhhccccccccccCCCccc
Confidence            99999987432 222223346999999988764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.00022  Score=52.77  Aligned_cols=100  Identities=15%  Similarity=0.051  Sum_probs=61.3

Q ss_pred             CCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccCCccccc----ccCCcccEEEeeCCCCCc--ccccccccccceEE
Q 036679           34 CPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNEDRLARVS----ICGPNVRLVDISSLHAPC--GINVALCKNLKELK  106 (294)
Q Consensus        34 ~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~~l~~~~----~~~~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~  106 (294)
                      |...+.++.++......+ .+.++++|++|++.+...++.+.    ...++|+.|+++++.+..  +..+..+++|++|+
T Consensus         7 c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             cCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            344555555544322221 23456788888887665554442    246788899988887432  23467788899999


Q ss_pred             ecccccChHHHHHHhcCCCCCcEEeeccc
Q 036679          107 LFKLSITNEWLCNQFSELPFLEYLEIFRC  135 (294)
Q Consensus       107 L~~~~i~~~~l~~l~~~~~~L~~L~l~~c  135 (294)
                      |+++.++.  ++.-......|+.|+|++.
T Consensus        87 Ls~N~l~~--l~~~~~~~~~l~~L~L~~N  113 (156)
T d2ifga3          87 LSFNALES--LSWKTVQGLSLQELVLSGN  113 (156)
T ss_dssp             CCSSCCSC--CCSTTTCSCCCCEEECCSS
T ss_pred             ccCCCCcc--cChhhhccccccccccCCC
Confidence            98888663  2222223346888888864

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.17  E-value=0.00045  Score=51.44  Aligned_cols=59  Identities=12%  Similarity=0.092  Sum_probs=35.4

Q ss_pred             CCcccEEEeeCCCCCcc------cccccccccceEEec--ccccChHH---HHHHhcCCCCCcEEeeccc
Q 036679           77 GPNVRLVDISSLHAPCG------INVALCKNLKELKLF--KLSITNEW---LCNQFSELPFLEYLEIFRC  135 (294)
Q Consensus        77 ~~~L~~L~l~~c~~~~~------~~~~~~~~L~~L~L~--~~~i~~~~---l~~l~~~~~~L~~L~l~~c  135 (294)
                      .++++.+++.+|.....      ..+...++|+.++|.  ++.+++++   +...+..++.|+.|++...
T Consensus        73 ~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          73 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             cccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            45666666666653221      234556778776664  44566644   4445567888888887653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.63  E-value=0.002  Score=47.83  Aligned_cols=80  Identities=10%  Similarity=0.049  Sum_probs=42.9

Q ss_pred             CCCccEEEccccCCccc-----c---cccCCcccEEEeeCCCCCcc------cccccccccceEEecccccChHHHHH--
Q 036679           56 LGKLSKFMVRNEDRLAR-----V---SICGPNVRLVDISSLHAPCG------INVALCKNLKELKLFKLSITNEWLCN--  119 (294)
Q Consensus        56 l~~L~~L~l~~c~~l~~-----~---~~~~~~L~~L~l~~c~~~~~------~~~~~~~~L~~L~L~~~~i~~~~l~~--  119 (294)
                      .++|++|+++++..+..     +   ....++|++|++++|.....      ..+...++|++|+++++.++++++..  
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            46677777766543321     1   11245677777766653211      12334456777777777666654332  


Q ss_pred             -HhcCCCCCcEEeeccc
Q 036679          120 -QFSELPFLEYLEIFRC  135 (294)
Q Consensus       120 -l~~~~~~L~~L~l~~c  135 (294)
                       .+...+.|++|+++++
T Consensus        94 ~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HHTTTTCCCSEEECCCC
T ss_pred             HHHHhCCcCCEEECCCC
Confidence             3445566666666543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.52  E-value=0.00085  Score=49.87  Aligned_cols=104  Identities=10%  Similarity=0.046  Sum_probs=70.0

Q ss_pred             CCCCccEEEeeec-ccChHHHHHH---HhcCCCCCEEEEEcCCCCC-----ee--ccCCCCCccEEEccccCC----ccc
Q 036679            8 TLSSLRELGLFKC-AANDEAIRDI---VAGCPLIERLKIIDCRGLK-----SL--EFLNLGKLSKFMVRNEDR----LAR   72 (294)
Q Consensus         8 ~l~~Lk~L~L~~~-~~~~~~l~~~---~~~~~~Le~L~L~~c~~l~-----~l--~~~~l~~L~~L~l~~c~~----l~~   72 (294)
                      +.++|++|+|+++ .++++++..+   +..+++|++|++++|. +.     .+  .+...++++.+++++|.-    ...
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCc-ccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4689999999984 6888665544   4578999999999985 21     11  122347899999998761    111


Q ss_pred             ---ccccCCcccEEEeeCCC--CCcc------cccccccccceEEeccccc
Q 036679           73 ---VSICGPNVRLVDISSLH--APCG------INVALCKNLKELKLFKLSI  112 (294)
Q Consensus        73 ---~~~~~~~L~~L~l~~c~--~~~~------~~~~~~~~L~~L~L~~~~i  112 (294)
                         .....++|+.+++..+.  ....      ..+..+++|++|+++.+..
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence               12246789988876543  2211      1245778999999987653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.00015  Score=54.06  Aligned_cols=81  Identities=15%  Similarity=0.122  Sum_probs=55.1

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCCCCeec-----cCCCCCccEEEccccC--Ccccc-cccCCcccEEEeeCCCCCcc---
Q 036679           25 EAIRDIVAGCPLIERLKIIDCRGLKSLE-----FLNLGKLSKFMVRNED--RLARV-SICGPNVRLVDISSLHAPCG---   93 (294)
Q Consensus        25 ~~l~~~~~~~~~Le~L~L~~c~~l~~l~-----~~~l~~L~~L~l~~c~--~l~~~-~~~~~~L~~L~l~~c~~~~~---   93 (294)
                      ..+..+...++.|++|+++++. +..+.     +..+++|+.|+++++.  .+..+ .....+|+.+++.++.....   
T Consensus        55 ~~l~~~~~~~~~L~~L~Ls~N~-i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~  133 (162)
T d1koha1          55 ATLRIIEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRD  133 (162)
T ss_dssp             HHHHHHHHHCTTCCCCCCCSSC-CCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSS
T ss_pred             hhhHHHHHhCCCCCEeeCCCcc-ccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCccc
Confidence            4445566789999999999985 33321     2347899999999886  33332 22456789999999874321   


Q ss_pred             ------cccccccccceEE
Q 036679           94 ------INVALCKNLKELK  106 (294)
Q Consensus        94 ------~~~~~~~~L~~L~  106 (294)
                            ..+..+|+|+.|+
T Consensus       134 ~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         134 QSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHHHTTSTTCCEET
T ss_pred             chhHHHHHHHHCCCCCEEC
Confidence                  1256789999875

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0017  Score=48.01  Aligned_cols=59  Identities=22%  Similarity=0.022  Sum_probs=35.0

Q ss_pred             cCCcccEEEeeCCCCCc----ccccccccccceEEecccccChH-HHHHHhcCCCCCcEEeecccc
Q 036679           76 CGPNVRLVDISSLHAPC----GINVALCKNLKELKLFKLSITNE-WLCNQFSELPFLEYLEIFRCM  136 (294)
Q Consensus        76 ~~~~L~~L~l~~c~~~~----~~~~~~~~~L~~L~L~~~~i~~~-~l~~l~~~~~~L~~L~l~~c~  136 (294)
                      .+++|++|++++|....    ...+..+++|+.|+++++.+++- .+.. + ....|+.|++.+.+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~-l-~~~~L~~L~L~~Np  126 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-I-KGLKLEELWLDGNS  126 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHH-H-TTCCCSSCCCTTST
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhh-h-hccccceeecCCCC
Confidence            45677777777776321    12244567777777777776652 2222 2 34467777777644