Citrus Sinensis ID: 036682

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------7
Protein Sequence
RNWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQESISELQKK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHcHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHEEccHHHHHHHHHHccHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
rnwplecnNLKAKIDLLQKNQRHYlgedleslslKDIQQLEQQLDTALKHIRSRKNQLMQESISELQKK
Flexible Loop (DISEMBL)
rnwplecnNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQEsiselqkk
Low Complexity Region (SEG)
RNWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQESISELQKK
Disordered region (IsUnstruct)
******CNNLKAKIDLLQKNQRHYLG*******************************************
Disordered Region (DISOPRED)
RNWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQESISELQK*
Disordered Region (DISEMBL)
RNWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKN*************
Disordered Region (DISPRO)
*NWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQESISEL***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
RNWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDxxxxxxxxxxxxxxxxxxxxxLMQESISELQKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	69	2.2.26 [Sep-21-2011]
A2IB53	256	Floral homeotic protein A	no	no	0.985	0.265	0.75	4e-23
P35631	256	Floral homeotic protein A	yes	no	0.985	0.265	0.75	6e-23
Q39371	256	Floral homeotic protein A	N/A	no	0.985	0.265	0.75	6e-23
Q41276	254	Floral homeotic protein A	N/A	no	0.985	0.267	0.735	2e-22
Q8GTF5	256	Floral homeotic protein A	N/A	no	0.985	0.265	0.735	2e-22
B4YPW6	256	Floral homeotic protein A	N/A	no	0.985	0.265	0.735	2e-22
Q96356	256	Floral homeotic protein A	N/A	no	0.985	0.265	0.735	2e-22
Q6R4S6	254	Transcription factor CAUL	N/A	no	0.985	0.267	0.720	2e-22
Q6R4S3	254	Transcription factor CAUL	N/A	no	0.985	0.267	0.720	2e-22
Q9SBK9	254	Transcription factor CAUL	N/A	no	0.985	0.267	0.720	2e-22

>sp|A2IB53|AP1_CITSI Floral homeotic protein APETALA 1 OS=Citrus sinensis GN=AP1 PE=2 SV=1

 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 51/68 (75%), Positives = 62/68 (91%)

Query: 2   NWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQE 61
           NW +E N LKAKI+LL++NQRHYLGEDL+++S K++Q LEQQLDTALKHIR+RKNQLM E
Sbjct: 90  NWSMEYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRTRKNQLMYE 149

Query: 62  SISELQKK 69
           SI+ELQKK
Sbjct: 150 SINELQKK 157

Transcription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins.
Citrus sinensis (taxid: 2711)

>sp|P35631|AP1_ARATH Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1 PE=1 SV=2

 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 51/68 (75%), Positives = 62/68 (91%)

Query: 2   NWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQE 61
           NW +E N LKAKI+LL++NQRHYLGEDL+++S K++Q LEQQLDTALKHIR+RKNQLM E
Sbjct: 90  NWSMEYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRTRKNQLMYE 149

Query: 62  SISELQKK 69
           SI+ELQKK
Sbjct: 150 SINELQKK 157

Transcription factor that promotes early floral meristem identity in synergy with LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Is indispensable for normal development of sepals and petals in flowers. Regulates positively the B class homeotic proteins APETALA3 and PISTILLATA with the cooperation of LEAFY and UFO. Interacts with SEPALLATA3 or AP3/PI heterodimer to form complexes that could be involved in genes regulation during floral meristem development. Regulates positively AGAMOUS in cooperation with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Together with AGL24 and SVP, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Represses flowering time genes AGL24, SVP and SOC1 in emerging floral meristems.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39371|3AP1_BRAOL Floral homeotic protein APETALA 1 OS=Brassica oleracea GN=AP1 PE=2 SV=1

 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 51/68 (75%), Positives = 62/68 (91%)

Query: 2   NWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQE 61
           NW +E N LKAKI+LL++NQRHYLGEDL+++S K++Q LEQQLDTALKHIRSRKNQLM E
Sbjct: 90  NWSMEYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRSRKNQLMYE 149

Query: 62  SISELQKK 69
           SI+ELQ+K
Sbjct: 150 SINELQRK 157

Transcription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins.

Brassica oleracea (taxid: 3712)

>sp|Q41276|AP1_SINAL Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/68 (73%), Positives = 62/68 (91%)

Query: 2   NWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQE 61
           NW +E N LKAKI+LL++NQRHYLGEDL+++S K++Q LEQQLDTALKHIRSRKNQLM +
Sbjct: 90  NWSMEYNRLKAKIELLERNQRHYLGEDLQAMSSKELQNLEQQLDTALKHIRSRKNQLMHD 149

Query: 62  SISELQKK 69
           SI+ELQ+K
Sbjct: 150 SINELQRK 157

Controls floral meristem identity. Is also required for normal development of sepals and petals. Is required for the transition of an influorescence meristem into a floral meristem. Interacts with LEAFY.

Sinapis alba (taxid: 3728)

>sp|Q8GTF5|AP1A_BRAOB Floral homeotic protein APETALA 1 A OS=Brassica oleracea var. botrytis GN=AP1A PE=2 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/68 (73%), Positives = 62/68 (91%)

Query: 2   NWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQE 61
           NW +E N LKAKI+LL++NQRHYLGEDL+++S K++Q LEQQLDTALKHIRSRKNQLM +
Sbjct: 90  NWSMEYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRSRKNQLMYD 149

Query: 62  SISELQKK 69
           SI+ELQ+K
Sbjct: 150 SINELQRK 157

Transcription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins.

Brassica oleracea var. botrytis (taxid: 3715)

>sp|B4YPW6|AP1A_BRAOA Floral homeotic protein APETALA 1 A OS=Brassica oleracea var. alboglabra GN=AP1A PE=3 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/68 (73%), Positives = 62/68 (91%)

Query: 2   NWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQE 61
           NW +E N LKAKI+LL++NQRHYLGEDL+++S K++Q LEQQLDTALKHIRSRKNQLM +
Sbjct: 90  NWSMEYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRSRKNQLMYD 149

Query: 62  SISELQKK 69
           SI+ELQ+K
Sbjct: 150 SINELQRK 157

Transcription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins.

Brassica oleracea var. alboglabra (taxid: 3714)

>sp|Q96356|2AP1_BRAOT Floral homeotic protein APETALA 1-2 OS=Brassica oleracea var. italica GN=2AP1 PE=2 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/68 (73%), Positives = 62/68 (91%)

Query: 2   NWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQE 61
           NW +E N LKAKI+LL++NQRHYLGEDL+++S K++Q LEQQLDTALKHIRSRKNQLM +
Sbjct: 90  NWSMEYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRSRKNQLMYD 149

Query: 62  SISELQKK 69
           SI+ELQ+K
Sbjct: 150 SINELQRK 157

Transcription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins.

Brassica oleracea var. italica (taxid: 36774)

>sp|Q6R4S6|CAL_BRARC Transcription factor CAULIFLOWER OS=Brassica rapa subsp. chinensis GN=CAL PE=2 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/68 (72%), Positives = 62/68 (91%)

Query: 2   NWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQE 61
           NW +E + LKAKI+LL++NQRHYLGEDLES+S+K++Q LEQQLDT+LKHIRSRKNQLM E
Sbjct: 92  NWSMEYSRLKAKIELLERNQRHYLGEDLESISIKELQNLEQQLDTSLKHIRSRKNQLMHE 151

Query: 62  SISELQKK 69
           S++ LQ+K
Sbjct: 152 SLNHLQRK 159

Probable transcription factor that promotes early floral meristem identity in synergy with APETALA1, FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1.

Brassica rapa subsp. chinensis (taxid: 93385)

>sp|Q6R4S3|CAL_BRARA Transcription factor CAULIFLOWER OS=Brassica rapa GN=CAL PE=2 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/68 (72%), Positives = 62/68 (91%)

Query: 2   NWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQE 61
           NW +E + LKAKI+LL++NQRHYLGEDLES+S+K++Q LEQQLDT+LKHIRSRKNQLM E
Sbjct: 92  NWSMEYSRLKAKIELLERNQRHYLGEDLESISIKELQNLEQQLDTSLKHIRSRKNQLMHE 151

Query: 62  SISELQKK 69
           S++ LQ+K
Sbjct: 152 SLNHLQRK 159

Probable transcription factor that promotes early floral meristem identity in synergy with APETALA1, FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1.

Brassica rapa (taxid: 51350)

>sp|Q9SBK9|CAL_BRARP Transcription factor CAULIFLOWER OS=Brassica rapa subsp. pekinensis GN=CAL PE=2 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/68 (72%), Positives = 62/68 (91%)

Query: 2   NWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQE 61
           NW +E + LKAKI+LL++NQRHYLGEDLES+S+K++Q LEQQLDT+LKHIRSRKNQLM E
Sbjct: 92  NWSMEYSRLKAKIELLERNQRHYLGEDLESISIKELQNLEQQLDTSLKHIRSRKNQLMHE 151

Query: 62  SISELQKK 69
           S++ LQ+K
Sbjct: 152 SLNHLQRK 159

Probable transcription factor that promotes early floral meristem identity in synergy with APETALA1, FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1.

Brassica rapa subsp. pekinensis (taxid: 51351)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
37703724	243	APETALA1 [Citrus sinensis] gi|37703726|g	1.0	0.283	0.985	2e-30
219964711	247	MAP1 [Mangifera indica]	0.985	0.275	0.808	6e-23
422036468	242	MADS domain transcription factor APL2 [C	0.985	0.280	0.779	1e-22
240130270	247	APETALA1-like protein [Mangifera indica]	0.985	0.275	0.794	1e-22
127905766	140	APETALA1-like [Viola pubescens]	0.985	0.485	0.75	3e-22
32478015	219	FRUITFULL-like MADS-box [Chelidonium maj	0.985	0.310	0.794	3e-22
255541974	180	mads box protein, putative [Ricinus comm	0.985	0.377	0.794	4e-22
225423412	241	PREDICTED: floral homeotic protein APETA	0.985	0.282	0.794	5e-22
60100338	241	MADS box protein AP1a [Lotus japonicus]	0.985	0.282	0.764	9e-22
332144226	243	PgMADS protein4 [Panax ginseng]	0.985	0.279	0.764	1e-21

>gi|37703724|gb|AAR01227.1| APETALA1 [Citrus sinensis] gi|37703726|gb|AAR01228.1| APETALA1 [Citrus sinensis]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/69 (98%), Positives = 69/69 (100%)

Query: 1   RNWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQ 60
           RNWPLECNNLKAKIDLLQK+QRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQ
Sbjct: 89  RNWPLECNNLKAKIDLLQKDQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQ 148

Query: 61  ESISELQKK 69
           ESISELQKK
Sbjct: 149 ESISELQKK 157

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219964711|gb|ACL68407.1| MAP1 [Mangifera indica]

 Score =  111 bits (277), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 55/68 (80%), Positives = 63/68 (92%)

Query: 2   NWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQE 61
           NW LE + LK+KI+LLQ++QRHYLGEDL+SLS++DIQ LEQQLDTALKHIRSRKNQLM E
Sbjct: 90  NWSLEFHKLKSKIELLQRSQRHYLGEDLDSLSMRDIQNLEQQLDTALKHIRSRKNQLMYE 149

Query: 62  SISELQKK 69
           SISELQKK
Sbjct: 150 SISELQKK 157

Source: Mangifera indica

Species: Mangifera indica

Genus: Mangifera

Family: Anacardiaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|422036468|gb|AFX74875.1| MADS domain transcription factor APL2 [Camellia japonica]

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/68 (77%), Positives = 61/68 (89%)

Query: 2   NWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQE 61
           NW LEC  L+AKI+LLQ+N RHY+GEDL+SLSLK++Q LE QLDTALKHIR+RKNQLM E
Sbjct: 89  NWSLECTRLRAKIELLQRNHRHYVGEDLDSLSLKELQNLENQLDTALKHIRTRKNQLMHE 148

Query: 62  SISELQKK 69
           SISELQKK
Sbjct: 149 SISELQKK 156

Source: Camellia japonica

Species: Camellia japonica

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240130270|gb|ACS45102.1| APETALA1-like protein [Mangifera indica]

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/68 (79%), Positives = 63/68 (92%)

Query: 2   NWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQE 61
           NW LE + LK+KI+LLQ++QRHYLGEDL+SLS++DIQ LEQQLDTALKHIRSRKNQLM E
Sbjct: 90  NWSLEFHKLKSKIELLQRSQRHYLGEDLDSLSVRDIQNLEQQLDTALKHIRSRKNQLMYE 149

Query: 62  SISELQKK 69
           SISELQ+K
Sbjct: 150 SISELQRK 157

Source: Mangifera indica

Species: Mangifera indica

Genus: Mangifera

Family: Anacardiaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|127905766|gb|ABO28755.1| APETALA1-like [Viola pubescens]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/68 (75%), Positives = 62/68 (91%)

Query: 2   NWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQE 61
           NW LE N LKAK++LLQ++ RHY+GEDLES+SLK++Q LEQQLDTALKHIR+RKNQLM +
Sbjct: 48  NWTLEYNRLKAKVELLQRDHRHYMGEDLESMSLKELQNLEQQLDTALKHIRTRKNQLMYD 107

Query: 62  SISELQKK 69
           SISELQ+K
Sbjct: 108 SISELQRK 115

Source: Viola pubescens

Species: Viola pubescens

Genus: Viola

Family: Violaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|32478015|gb|AAP83369.1| FRUITFULL-like MADS-box [Chelidonium majus]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 54/68 (79%), Positives = 61/68 (89%)

Query: 2   NWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQE 61
           NW LE   LKAKI++LQKNQRH++GEDLES+SLK++Q LEQQLDTALK IRSRKNQLM E
Sbjct: 63  NWSLEYTKLKAKIEILQKNQRHFMGEDLESMSLKELQNLEQQLDTALKQIRSRKNQLMYE 122

Query: 62  SISELQKK 69
           SISELQKK
Sbjct: 123 SISELQKK 130

Source: Chelidonium majus

Species: Chelidonium majus

Genus: Chelidonium

Family: Papaveraceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541974|ref|XP_002512051.1| mads box protein, putative [Ricinus communis] gi|223549231|gb|EEF50720.1| mads box protein, putative [Ricinus communis]

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 54/68 (79%), Positives = 62/68 (91%)

Query: 2  NWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQE 61
          NW LE N LKAK++LLQ+N RHYLGEDL+SL+LK++Q LEQQLDTALKHIR+RKNQLM E
Sbjct: 28 NWTLEYNRLKAKVELLQRNHRHYLGEDLDSLTLKELQNLEQQLDTALKHIRTRKNQLMFE 87

Query: 62 SISELQKK 69
          SISELQKK
Sbjct: 88 SISELQKK 95

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423412|ref|XP_002263170.1| PREDICTED: floral homeotic protein APETALA 1 [Vitis vinifera] gi|46949180|gb|AAT07447.1| AP1-like protein [Vitis vinifera] gi|147778525|emb|CAN71708.1| hypothetical protein VITISV_013455 [Vitis vinifera] gi|297738119|emb|CBI27320.3| unnamed protein product [Vitis vinifera]

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 54/68 (79%), Positives = 63/68 (92%)

Query: 2   NWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQE 61
           NW LE + LKAKI+LLQ++QRH+LGEDL+SLSLK++Q LEQQLDTALKHIRSRKNQLM E
Sbjct: 90  NWSLEYSKLKAKIELLQRSQRHFLGEDLDSLSLKELQNLEQQLDTALKHIRSRKNQLMYE 149

Query: 62  SISELQKK 69
           SISELQ+K
Sbjct: 150 SISELQRK 157

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|60100338|gb|AAX13296.1| MADS box protein AP1a [Lotus japonicus]

 Score =  107 bits (267), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 52/68 (76%), Positives = 60/68 (88%)

Query: 2   NWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQE 61
           NW +E   LKAKIDLLQ+N RHY+GEDL S+SLK++Q LEQQLDTALKHIR+R+NQLM E
Sbjct: 90  NWTIEYTRLKAKIDLLQRNHRHYMGEDLGSMSLKELQSLEQQLDTALKHIRTRRNQLMYE 149

Query: 62  SISELQKK 69
           SISELQKK
Sbjct: 150 SISELQKK 157

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|332144226|dbj|BAK20019.1| PgMADS protein4 [Panax ginseng]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/68 (76%), Positives = 60/68 (88%)

Query: 2   NWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQE 61
           NW  E   LKA+I+LLQ+N +HY+GEDL+SL+LK+IQ LEQQLDTALKHIRSRKNQLM E
Sbjct: 91  NWTFEYTKLKARIELLQRNHQHYMGEDLDSLTLKEIQNLEQQLDTALKHIRSRKNQLMHE 150

Query: 62  SISELQKK 69
           SISELQKK
Sbjct: 151 SISELQKK 158

Source: Panax ginseng

Species: Panax ginseng

Genus: Panax

Family: Araliaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
TAIR|locus:2033273	256	AP1 "AT1G69120" [Arabidopsis t	0.985	0.265	0.75	1.4e-23
TAIR|locus:2028830	255	CAL "CAULIFLOWER" [Arabidopsis	0.985	0.266	0.720	7.8e-23
UNIPROTKB|Q9ZS25	210	gsqua1 "MADS-box protein, GSQU	0.971	0.319	0.686	3.9e-21
UNIPROTKB|Q10CQ1	246	MADS14 "MADS-box transcription	0.985	0.276	0.661	1.5e-19
UNIPROTKB|D2T2G0	238	gsqua2 "GSQUA2 protein" [Gerbe	0.985	0.285	0.602	4e-19
TAIR|locus:2173522	242	AGL8 "AGAMOUS-like 8" [Arabido	0.985	0.280	0.647	8.3e-19
UNIPROTKB|Q6Q9I2	267	MADS15 "MADS-box transcription	0.985	0.254	0.661	1.7e-18
UNIPROTKB|Q0D4T4	249	MADS18 "MADS-box transcription	0.985	0.273	0.632	9.5e-18
TAIR|locus:2102871	249	AGL79 "AGAMOUS-like 79" [Arabi	0.927	0.257	0.593	2e-15
UNIPROTKB|Q6EU39	250	MADS6 "MADS-box transcription	1.0	0.276	0.536	5.4e-15

TAIR|locus:2033273 AP1 "AT1G69120" [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 51/68 (75%), Positives = 62/68 (91%)

Query:     2 NWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQE 61
             NW +E N LKAKI+LL++NQRHYLGEDL+++S K++Q LEQQLDTALKHIR+RKNQLM E
Sbjct:    90 NWSMEYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRTRKNQLMYE 149

Query:    62 SISELQKK 69
             SI+ELQKK
Sbjct:   150 SINELQKK 157

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009933 "meristem structural organization" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IGI;IDA

GO:0009908 "flower development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0010076 "maintenance of floral meristem identity" evidence=IGI

GO:0010582 "floral meristem determinacy" evidence=IGI

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2028830 CAL "CAULIFLOWER" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 49/68 (72%), Positives = 61/68 (89%)

Query:     2 NWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQE 61
             NW +E + LKAKI+LL++NQRHYLGE+LE +SLKD+Q LEQQL+TALKHIRSRKNQLM E
Sbjct:    92 NWSMEYSRLKAKIELLERNQRHYLGEELEPMSLKDLQNLEQQLETALKHIRSRKNQLMNE 151

Query:    62 SISELQKK 69
             S++ LQ+K
Sbjct:   152 SLNHLQRK 159

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009911 "positive regulation of flower development" evidence=TAS

GO:0010582 "floral meristem determinacy" evidence=IEP

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

UNIPROTKB|Q9ZS25 gsqua1 "MADS-box protein, GSQUA1" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 46/67 (68%), Positives = 57/67 (85%)

Query:     3 WPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQES 62
             W  ECN LK++ +LLQ+N RHY+GED+ESL L++IQ LEQQLDTALK I S+KNQL+ +S
Sbjct:    91 WTQECNKLKSRAELLQRNLRHYMGEDIESLGLREIQNLEQQLDTALKRIHSKKNQLLHQS 150

Query:    63 ISELQKK 69
             ISELQKK
Sbjct:   151 ISELQKK 157

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q10CQ1 MADS14 "MADS-box transcription factor 14" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 45/68 (66%), Positives = 58/68 (85%)

Query:     2 NWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQE 61
             NW  E   LKAK++ +QK Q+H +GEDLESL+LK++QQLEQQL+ +LKHIRSRK+QLM E
Sbjct:    90 NWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLE 149

Query:    62 SISELQKK 69
             SI+ELQ+K
Sbjct:   150 SINELQRK 157

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|D2T2G0 gsqua2 "GSQUA2 protein" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 41/68 (60%), Positives = 59/68 (86%)

Query:     2 NWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQE 61
             +W LE + L+AKI++L+KN +HY+GEDLE L+L+++Q +EQQ++TALK +R+RKNQ+M E
Sbjct:    90 SWTLESSKLRAKIEVLEKNIKHYVGEDLEPLNLRELQSVEQQIETALKRVRTRKNQVMHE 149

Query:    62 SISELQKK 69
             SISEL KK
Sbjct:   150 SISELHKK 157

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2173522 AGL8 "AGAMOUS-like 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 44/68 (64%), Positives = 57/68 (83%)

Query:     2 NWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQE 61
             NW LE   LKA++++L+KN+R+++GEDL+SLSLK++Q LE QLD A+K IRSRKNQ M E
Sbjct:    90 NWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLDAAIKSIRSRKNQAMFE 149

Query:    62 SISELQKK 69
             SIS LQKK
Sbjct:   150 SISALQKK 157

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009911 "positive regulation of flower development" evidence=TAS

GO:0010077 "maintenance of inflorescence meristem identity" evidence=IGI

GO:0031540 "regulation of anthocyanin biosynthetic process" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0010154 "fruit development" evidence=IMP

UNIPROTKB|Q6Q9I2 MADS15 "MADS-box transcription factor 15" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 45/68 (66%), Positives = 56/68 (82%)

Query:     2 NWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQE 61
             NW  E   LKAKI+ +QK  +H +GEDLESL+LK++QQLEQQL+++LKHI SRK+ LM E
Sbjct:    90 NWCHEYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLESSLKHIISRKSHLMLE 149

Query:    62 SISELQKK 69
             SISELQKK
Sbjct:   150 SISELQKK 157

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q0D4T4 MADS18 "MADS-box transcription factor 18" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 43/68 (63%), Positives = 56/68 (82%)

Query:     2 NWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQE 61
             NW  E   LK+K+D LQK+QR  LGE L++L++K++QQLE QL+ +LKHIRS+KNQL+ E
Sbjct:    90 NWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFE 149

Query:    62 SISELQKK 69
             SISELQKK
Sbjct:   150 SISELQKK 157

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2102871 AGL79 "AGAMOUS-like 79" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 38/64 (59%), Positives = 51/64 (79%)

Query:     6 ECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQESISE 65
             EC+ L   ID+LQ++ RH  GE+++ LS++D+Q +E QLDTALK  RSRKNQLM ESI++
Sbjct:    94 ECSKLLRMIDVLQRSLRHLRGEEVDGLSIRDLQGVEMQLDTALKKTRSRKNQLMVESIAQ 153

Query:    66 LQKK 69
             LQKK
Sbjct:   154 LQKK 157

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048481 "ovule development" evidence=RCA

UNIPROTKB|Q6EU39 MADS6 "MADS-box transcription factor 6" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 37/69 (53%), Positives = 50/69 (72%)

Query:     1 RNWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQ 60
             ++W  E + LKAK + LQ+ QRH LGEDL  LS+K++QQLE+QL+ AL   R RK QLM 
Sbjct:    87 QSWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMM 146

Query:    61 ESISELQKK 69
             E + EL++K
Sbjct:   147 EQVEELRRK 155

GO:0005515 "protein binding" evidence=IPI

GO:0010022 "meristem determinacy" evidence=IMP

GO:0010093 "specification of floral organ identity" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P35631	AP1_ARATH	No assigned EC number	0.75	0.9855	0.2656	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	69
pfam01486	100	pfam01486, K-box, K-box region	2e-20

>gnl|CDD|216525 pfam01486, K-box, K-box region

 Score = 76.8 bits (190), Expect = 2e-20
 Identities = 42/68 (61%), Positives = 50/68 (73%)

Query: 2  NWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQE 61
          N   E   LK + + LQ+ QRH LGEDL SLSLK++QQLEQQL+  LKHIRSRKN+L+  
Sbjct: 16 NLQQEAAKLKKQNENLQREQRHLLGEDLGSLSLKELQQLEQQLENGLKHIRSRKNELLLN 75

Query: 62 SISELQKK 69
           I ELQKK
Sbjct: 76 QIEELQKK 83

The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	69
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.88
KOG0014	195	consensus MADS box transcription factor [Transcrip	95.74
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	93.41
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	90.35
PRK15422	79	septal ring assembly protein ZapB; Provisional	81.1

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.88  E-value=1.2e-22  Score=121.37  Aligned_cols=68  Identities=57%  Similarity=0.794  Sum_probs=66.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 036682            2 NWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQESISELQKK   69 (69)
Q Consensus         2 ~~~~e~~~l~~~~e~L~~~~r~~~GedL~~Ls~~eL~~LE~~Le~~l~~VR~rK~~ll~~~i~~l~~k   69 (69)
                      +|+.++++|+.+++.|+..+|+++|+||++||++||..||++|+.|+.+||++|+++|.++|..+++|
T Consensus        16 ~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~k   83 (100)
T PF01486_consen   16 ELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKK   83 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999874

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=95.74  E-value=0.0031  Score=40.46  Aligned_cols=61  Identities=34%  Similarity=0.427  Sum_probs=49.8

Q ss_pred             hHHHHHHHHHHHHHHHH---HHhhhhcCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036682            3 WPLECNNLKAKIDLLQK---NQRHYLGEDLESLSL-KDIQQLEQQLDTALKHIRSRKNQLMQESI   63 (69)
Q Consensus         3 ~~~e~~~l~~~~e~L~~---~~r~~~GedL~~Ls~-~eL~~LE~~Le~~l~~VR~rK~~ll~~~i   63 (69)
                      |......+....+.+..   ..++++|+++.++++ .+|..++.+++.++..+|..+...+..++
T Consensus       112 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~  176 (195)
T KOG0014|consen  112 KKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESSLHNSRSSKSKPLSDSN  176 (195)
T ss_pred             hhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHhhcCCCCCCCcCCcchh
Confidence            34455566666776664   499999999999999 99999999999999999998877766554

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=93.41  E-value=0.18  Score=27.76  Aligned_cols=32  Identities=25%  Similarity=0.506  Sum_probs=25.2

Q ss_pred             hhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 036682           23 HYLGEDLESLSLKDIQQLEQQLDTALKHIRSR   54 (69)
Q Consensus        23 ~~~GedL~~Ls~~eL~~LE~~Le~~l~~VR~r   54 (69)
                      +..|+||+.||++||..==..|+.=+.+++..
T Consensus        12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~   43 (59)
T PF06698_consen   12 HEIGEDLSLLSVEELEERIALLEAEIARLEAA   43 (59)
T ss_pred             cccCCCchhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999988666666666666553

The function of this family is unknown.

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=90.35  E-value=3.2  Score=26.32  Aligned_cols=52  Identities=19%  Similarity=0.264  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 036682            4 PLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKN   56 (69)
Q Consensus         4 ~~e~~~l~~~~e~L~~~~r~~~GedL~~Ls~~eL~~LE~~Le~~l~~VR~rK~   56 (69)
                      ...+..+..++..++..+..+.+ +-...|.+|...++.....+....+.||-
T Consensus       115 ~~~i~~l~~e~~~l~~kL~~l~~-~~~~vs~ee~~~~~~~~~~~~k~w~kRKr  166 (169)
T PF07106_consen  115 REEIEELEEEIEELEEKLEKLRS-GSKPVSPEEKEKLEKEYKKWRKEWKKRKR  166 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677888899999999998887 66669999999999999999999998874

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=81.10  E-value=7  Score=22.67  Aligned_cols=31  Identities=35%  Similarity=0.574  Sum_probs=23.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036682           32 LSLKDIQQLEQQLDTALKHIRSRKNQLMQESISELQ   67 (69)
Q Consensus        32 Ls~~eL~~LE~~Le~~l~~VR~rK~~ll~~~i~~l~   67 (69)
                      +||+=|.+||..+..|+.-|-     ++..+|+.|+
T Consensus         1 MS~EvleqLE~KIqqAvdtI~-----LLqmEieELK   31 (79)
T PRK15422          1 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELK   31 (79)
T ss_pred             CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence            578889999999999999874     4444555554

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00