Citrus Sinensis ID: 036697

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250---
Protein Sequence
MEMKNFRVFFFALLLLASPLLQVAKCQSDSETGVAETEGGDLGIVGEDAQDFGDGTLSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTLGIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDASMDEWLQGTAYTQSLSSKSKKKK
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHccccEEEcccccccccccccccccccccccccccccccccccccccEEEEEcccccccEEEcccEEEEEEEEEEcccccEEEEEEEEEccccccccEEEEEEcccccccccccccccEEEEEEEEcccccEEEEEEEEEEEEcccEEEEEEEccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccccccEEccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccccccccccccccccccccccccEEEEEEEcccccccccccEEEEEEEEEccccccEEEEEEEEEEcccccccEEEEEEEEcccccEEcccccEEEEEEEEcccccccccEEEEEEEEccccEEEEEEEccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEcccccccccHHHcccccccccccccccccc
Coil and Loop (DISEMBL)
MEMKNFRVFFFALLLLASpllqvakcqsdsetgvaeteggdlgivgedaqdfgdgtlspapgvdtvcifpknsarvvAAGEETELLVGMKNDGESSVNVIAIQAsvhlpfdhsLLVQNltgqafnnatvpvsaqatfpihfccqqpgtfdlVGSIVyevdqhpyqstfyngtievvesggfiSIESVFLVTLGIALLVLFGLWIHGQVKqlskktkkapkvevgtgttdasmDEWLqgtaytqslsskskkkk
Flexible Loop (DISEMBL)
MEMKNFRVFFFALLLLASPLLQVAKCQSDSETGVAETEGGDLGIVGEDAQDFGDGTLSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTLGIALLVLFGLWIHGQVkqlskktkkapkvevgtgttdasmdewlqgtaytqslsskskkkk
Low Complexity Region (SEG)
MEMKNFRVfffallllaspllQVAKCQSDSETGVAETEGGDLGIVGEDAQDFGDGTLSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTLGIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDASMDEWLQGTAYTQSLsskskkkk
Disordered region (IsUnstruct)
****NFRVFFFALLLLASPLLQVAKCQ*************DLGIVGEDAQDFGDGTLSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTLGIALLVLFGLWIHGQVK********************************************
Disordered Region (DISOPRED)
***KNFRVFFFALLLLASPLLQVAKCQSDSETG**************************APGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTLGIALLVLFGLW*******************************W******************
Disordered Region (DISEMBL)
MEMKNFRVFFFALLLLASPLLQVA*************EGGDLGIVGEDAQDFGDGTLSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTLGIALLVLFGLWIHGQV*****************GTTDASMDEWLQGTAY************
Disordered Region (DISPRO)
*EMKNFRVFFFALLLLASPLLQVAKCQS******************************PAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTLGIALLVLFGLWIHGQVKQLS*****************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEMKNFRVFFFALLLLASPLLQVAKCQSDSETGVAETEGGDLGIVGEDAQDFGDGTLSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTLGIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDASMDEWLQGTAYTQSLSSKSKKKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	253	2.2.26 [Sep-21-2011]
P45434	258	Translocon-associated pro	no	no	0.913	0.895	0.602	3e-62
Q54R45	236	Translocon-associated pro	yes	no	0.699	0.75	0.317	5e-17
Q5R4X4	291	Translocon-associated pro	yes	no	0.754	0.656	0.280	6e-13
P43307	286	Translocon-associated pro	yes	no	0.754	0.667	0.270	1e-11
P45433	288	Translocon-associated pro	N/A	no	0.770	0.677	0.295	3e-11
Q9CY50	286	Translocon-associated pro	yes	no	0.747	0.660	0.258	7e-09
A6QLP7	286	Translocon-associated pro	yes	no	0.731	0.646	0.264	1e-08
P16967	286	Translocon-associated pro	yes	no	0.703	0.622	0.268	1e-08
Q7TPJ0	319	Translocon-associated pro	no	no	0.739	0.586	0.261	1e-08
P53815	286	Translocon-associated pro	yes	no	0.770	0.681	0.252	7e-08

>sp|P45434|SSRA_ARATH Translocon-associated protein subunit alpha OS=Arabidopsis thaliana GN=At2g21160 PE=2 SV=3

 Score =  238 bits (607), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 144/239 (60%), Positives = 179/239 (74%), Gaps = 8/239 (3%)

Query: 22  QVAKCQSDSE---TGVAETEGGDLG-IVGEDAQDFGDGTLSPAPGVDTVCIFPKNSARVV 77
           QVA+CQSD+E   + V +  G +    V ED  D  D  LS  PGV+TVC+FPKNSA++V
Sbjct: 20  QVARCQSDAEDHSSLVDDVVGENTDDAVEEDDHDL-DMNLSSFPGVETVCVFPKNSAKLV 78

Query: 78  AAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATF 137
            AGEETELLVG+KN+G++ V V+ I+ASVHLP+DH LLVQNLT    NNA++P S QATF
Sbjct: 79  PAGEETELLVGLKNEGKTRVGVMGIRASVHLPYDHKLLVQNLTMLRLNNASIPTSLQATF 138

Query: 138 PIHFCCQQ---PGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTLGI 194
           P  F   Q   PG FDLVG I+Y+V+  PYQS FYNGTIEVVESGG +S ESVFL+TLGI
Sbjct: 139 PYIFAVSQYLQPGAFDLVGYIIYDVEGKPYQSVFYNGTIEVVESGGLLSGESVFLLTLGI 198

Query: 195 ALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDASMDEWLQGTAYTQSLSSKSKKKK 253
            LL+L GLW + QV++L+KKTKK  KVEVGT +T+AS+DEWL+GT   ++ S K+K KK
Sbjct: 199 GLLLLLGLWAYSQVQRLTKKTKKVSKVEVGTRSTEASLDEWLEGTTLAKTSSGKTKNKK 257

TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins. May be involved in the recycling of the translocation apparatus after completion of the translocation process or may function as a membrane-bound chaperone facilitating folding of translocated proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q54R45|SSRA_DICDI Translocon-associated protein subunit alpha OS=Dictyostelium discoideum GN=ssr1 PE=3 SV=1

 Score = 88.2 bits (217), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 93/192 (48%), Gaps = 15/192 (7%)

Query: 58  SPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQ 117
           +P   V    IFP N  +  AAG   E+LVG  N+ + ++N+  I AS++ P D S+ +Q
Sbjct: 34  TPTSDVSFSYIFPDNQDKNFAAGSVVEVLVGFTNNADKALNITHIFASLNHPQDFSVFIQ 93

Query: 118 NLTGQAFNNATVPVSAQATFPIHFCCQ---QPGTFDLVGSIVYEVDQHPYQSTFYNGTIE 174
           N T   F  A V     AT    F      +P  F L+ S+ Y+     +  TF+N TI 
Sbjct: 94  NYTRGDFGIA-VEKGHHATLAYRFVPSEYLEPREFGLLISLEYQDGAQNFTQTFFNSTIN 152

Query: 175 VVESGGFISIESVFLVTLGIALLVLFGLWIHG------QVKQLSKKTKKAPKVEVGTGTT 228
           + E      ++S FL+ LG+  +   G  ++G      +V+ +SK  K A +VE     T
Sbjct: 153 ITEKETSFDMDSFFLILLGLGFVGGIGYIVYGKMPKQKKVRTVSKVNKNAVRVE-----T 207

Query: 229 DASMDEWLQGTA 240
           +    EWL GT+
Sbjct: 208 EDETAEWLSGTS 219

TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q5R4X4|SSRA_PONAB Translocon-associated protein subunit alpha OS=Pongo abelii GN=SSR1 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 12/203 (5%)

Query: 55  GTLSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSL 114
           G    +P  DT  +F K       A    + LVG  N G     V ++ AS   P D+  
Sbjct: 75  GEPEASPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQF 132

Query: 115 LVQNLTGQAFNNATVPVSAQATFPIHFCCQQP---GTFDLVGSIVY-EVDQHPYQSTFYN 170
            +QN T     N  VP   QATF   F   +P     F LV ++ Y +++ + +Q   +N
Sbjct: 133 YIQNFTALPL-NTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFN 191

Query: 171 GTIEVVESGGFISIESVFLVTL--GIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTT 228
            T+ V+E    +  E++F+     G+ LLV+ GL    Q+ +  K+ +   KVE+GT + 
Sbjct: 192 QTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGLH---QLLESRKRKRPVQKVEMGTSSQ 248

Query: 229 DASMDEWLQGTAYTQSLSSKSKK 251
           +     W+      Q + S+  K
Sbjct: 249 NDVDMSWIPQETLNQIMQSRRDK 271

TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins. May be involved in the recycling of the translocation apparatus after completion of the translocation process or may function as a membrane-bound chaperone facilitating folding of translocated proteins.

Pongo abelii (taxid: 9601)

>sp|P43307|SSRA_HUMAN Translocon-associated protein subunit alpha OS=Homo sapiens GN=SSR1 PE=1 SV=3

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 90/203 (44%), Gaps = 12/203 (5%)

Query: 55  GTLSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSL 114
           G    +P  DT  +F K       A    + LVG  N G     V ++ AS   P D+  
Sbjct: 75  GEPEASPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQF 132

Query: 115 LVQNLTGQAFNNATVPVSAQATFPIHFCCQQP---GTFDLVGSIVY-EVDQHPYQSTFYN 170
            +QN T     N  VP   QATF   F   +P     F LV ++ Y +++ + +Q   +N
Sbjct: 133 YIQNFTALPL-NTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFN 191

Query: 171 GTIEVVESGGFISIESVFLVTL--GIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTT 228
            T+ V+E    +  E++F+     G+ LLV+ GL    Q+ +  K+ +   KVE+GT + 
Sbjct: 192 QTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGLH---QLLESRKRKRPIQKVEMGTSSQ 248

Query: 229 DASMDEWLQGTAYTQSLSSKSKK 251
           +     W+      Q   +  ++
Sbjct: 249 NDVDMSWIPQETLNQINKASPRR 271

TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins. May be involved in the recycling of the translocation apparatus after completion of the translocation process or may function as a membrane-bound chaperone facilitating folding of translocated proteins.

Homo sapiens (taxid: 9606)

>sp|P45433|SSRA_ONCMY Translocon-associated protein subunit alpha OS=Oncorhynchus mykiss GN=ssr1 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 97/210 (46%), Gaps = 15/210 (7%)

Query: 50  QDFGDGTLSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLP 109
           +D   G ++  P  DT  +F   +     A E  + LVG  N G     V +++AS   P
Sbjct: 71  EDAAVGDVTSHPDADTTIVF--VTGEEFPANEIVKFLVGFTNKGSQDFTVHSLEASFRYP 128

Query: 110 FDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQP---GTFDLVGSIVYEVDQ-HPYQ 165
            D    +QN T    +    P   QA+F   F   QP     F LV  + Y+  + + +Q
Sbjct: 129 QDFQFYIQNFTALPLSTVVQP-QKQASFEYSFIPAQPMAGRPFGLVILLNYQDSEGNGFQ 187

Query: 166 STFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGLWIHGQVKQLSKKTKKAP-KVE 222
           +  YN T+ +VE    +  E++F+     G+ +L +FG++   QV + S+  K+ P KVE
Sbjct: 188 TAIYNQTVTIVELEEGLDGETIFMYIFLTGLVVLAVFGMY---QVLE-SRTRKRFPVKVE 243

Query: 223 VGTGTTDASMDEWL-QGTAYTQSLSSKSKK 251
            GTG  +     W+ Q T    S +S S K
Sbjct: 244 TGTGGMNGVDISWIPQETLNIMSKASASPK 273

TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins. May be involved in the recycling of the translocation apparatus after completion of the translocation process or may function as a membrane-bound chaperone facilitating folding of translocated proteins.

Oncorhynchus mykiss (taxid: 8022)

>sp|Q9CY50|SSRA_MOUSE Translocon-associated protein subunit alpha OS=Mus musculus GN=Ssr1 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 8/197 (4%)

Query: 60  APGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNL 119
           +P  DT  +F K       A    + LVG  N G     V ++ AS   P D+   +QN 
Sbjct: 80  SPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNF 137

Query: 120 TGQAFNNATVPVSAQATFPIHFCCQQP---GTFDLVGSIVY-EVDQHPYQSTFYNGTIEV 175
           T     N  VP   QATF   F   +P     F LV ++ Y +++ + +Q   +N T+ V
Sbjct: 138 TALPL-NTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTV 196

Query: 176 VESGGFISIESVFLVTLGIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDASMDEW 235
           +E    +  E++F+    +A L L  +    Q+ +  K+ +   KVE+GT + +     W
Sbjct: 197 IEREDGLDGETIFMYMF-LAGLGLLVVVGLHQLLESRKRKRPIQKVEMGTSSQNDVDMSW 255

Query: 236 LQGTAYTQSLSSKSKKK 252
           +      Q   +  +++
Sbjct: 256 IPQETLNQINKASPRRQ 272

TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins. May be involved in the recycling of the translocation apparatus after completion of the translocation process or may function as a membrane-bound chaperone facilitating folding of translocated proteins.

Mus musculus (taxid: 10090)

>sp|A6QLP7|SSRA_BOVIN Translocon-associated protein subunit alpha OS=Bos taurus GN=SSR1 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 8/193 (4%)

Query: 55  GTLSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSL 114
           G    +P  DT  +F K       A    + LVG  N G     V ++ AS   P D+  
Sbjct: 75  GEPEASPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQF 132

Query: 115 LVQNLTGQAFNNATVPVSAQATFPIHFCCQQP---GTFDLVGSIVY-EVDQHPYQSTFYN 170
            +QN T     N  VP   QATF   F   +P     F LV ++ Y +++ + +Q   +N
Sbjct: 133 YIQNFTALPL-NTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFN 191

Query: 171 GTIEVVESGGFISIESVFLVTLGIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDA 230
            T+ ++E    +  E++F+    +A L L  +    Q+ +  K+ +   KVE+GT + + 
Sbjct: 192 QTVTIIEREDGLDGETIFMYMF-LAGLGLLVVVGLHQLLESRKRKRPIQKVEMGTSSQND 250

Query: 231 SMDEWLQGTAYTQ 243
               W+      Q
Sbjct: 251 VDMSWIPQETLNQ 263

TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins. May be involved in the recycling of the translocation apparatus after completion of the translocation process or may function as a membrane-bound chaperone facilitating folding of translocated proteins.

Bos taurus (taxid: 9913)

>sp|P16967|SSRA_CANFA Translocon-associated protein subunit alpha OS=Canis familiaris GN=SSR1 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 8/186 (4%)

Query: 55  GTLSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSL 114
           G    +P  DT  +F K       A    + LVG  N G     V ++ AS   P D+  
Sbjct: 75  GEPEASPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQF 132

Query: 115 LVQNLTGQAFNNATVPVSAQATFPIHFCCQQP---GTFDLVGSIVY-EVDQHPYQSTFYN 170
            +QN T     N  VP   QATF   F   +P     F LV ++ Y +++ + +Q   +N
Sbjct: 133 YIQNFTALPL-NTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFN 191

Query: 171 GTIEVVESGGFISIESVFLVTLGIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDA 230
            T+ ++E    +  E++F+    +A L L  +    Q+ +  K+ +   KVE+GT + + 
Sbjct: 192 QTVTIIEREDGLDGETIFMYMF-LAGLGLLVVVGLHQLLESRKRKRPIQKVEMGTSSQND 250

Query: 231 SMDEWL 236
               W+
Sbjct: 251 VDMSWI 256

TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins. May be involved in the recycling of the translocation apparatus after completion of the translocation process or may function as a membrane-bound chaperone facilitating folding of translocated proteins.

Canis familiaris (taxid: 9615)

>sp|Q7TPJ0|SSRA_RAT Translocon-associated protein subunit alpha OS=Rattus norvegicus GN=Ssr1 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 86/195 (44%), Gaps = 8/195 (4%)

Query: 60  APGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNL 119
           +P  DT  +F K       A    + LVG  N G     V ++ AS   P D+   +QN 
Sbjct: 81  SPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNF 138

Query: 120 TGQAFNNATVPVSAQATFPIHFCCQQP---GTFDLVGSIVY-EVDQHPYQSTFYNGTIEV 175
           T     N  VP   QATF   F   +P     F LV ++ Y +++ + +Q   +N T+ V
Sbjct: 139 TALPL-NTIVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTV 197

Query: 176 VESGGFISIESVFLVTLGIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDASMDEW 235
           +E    +  E++F+    +A L L  +    Q+ +  K+ +   KVE+GT + +     W
Sbjct: 198 IEREDGLDGETIFMYMF-LAGLGLLVVVGLHQLLESRKRKRPIQKVEMGTSSQNDVDMSW 256

Query: 236 LQGTAYTQSLSSKSK 250
           +      Q  + + +
Sbjct: 257 IPQETLNQISAGRER 271

TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins. May be involved in the recycling of the translocation apparatus after completion of the translocation process or may function as a membrane-bound chaperone facilitating folding of translocated proteins.

Rattus norvegicus (taxid: 10116)

>sp|P53815|SSRA_RABIT Translocon-associated protein subunit alpha OS=Oryctolagus cuniculus GN=SSR1 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 88/210 (41%), Gaps = 15/210 (7%)

Query: 55  GTLSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSL 114
           G    +P  DT  +F K       A      LVG  N G     V ++ AS   P D+  
Sbjct: 75  GEPEASPSADTTILFVKGED--FPANNIVRFLVGFTNKGTEDFIVESLDASFRYPQDYQF 132

Query: 115 LVQNLTGQAFNNATVPVSAQATFPIHFCCQQP---GTFDLVGSIVY-EVDQHPYQSTFYN 170
            +QN T     N  VP   QATF   F   +P     F LV ++ Y + + + +Q   +N
Sbjct: 133 YIQNFTALPL-NTIVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDFNGNVFQDAVFN 191

Query: 171 GTIEVVESGGFISIESVFLVTLGIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDA 230
            T+ V+E    +  +++F+  + +A L L  +    Q+ +   + +   KVE+GT + + 
Sbjct: 192 QTVTVIEREDGLDGQTIFMY-MSLAGLGLLVVVGLHQLLESRNRKRPIQKVEMGTSSQND 250

Query: 231 SMDEWLQ-------GTAYTQSLSSKSKKKK 253
               W+          A  + L  K  +K+
Sbjct: 251 VDMSWIPQETLNQINKASPRRLPRKRPQKR 280

TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins. May be involved in the recycling of the translocation apparatus after completion of the translocation process or may function as a membrane-bound chaperone facilitating folding of translocated proteins.

Oryctolagus cuniculus (taxid: 9986)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
225427923	253	PREDICTED: translocon-associated protein	0.944	0.944	0.793	1e-107
257815608	257	putative translocon-associated protein a	0.952	0.937	0.817	1e-105
255576715	260	translocon-associated protein, alpha sub	0.952	0.926	0.809	1e-105
224078092	256	predicted protein [Populus trichocarpa]	0.940	0.929	0.781	1e-100
449458570	260	PREDICTED: translocon-associated protein	0.948	0.923	0.682	5e-91
125556754	257	hypothetical protein OsI_24464 [Oryza sa	0.920	0.906	0.665	2e-88
115469972	257	Os06g0715500 [Oryza sativa Japonica Grou	0.920	0.906	0.665	5e-88
224105245	256	predicted protein [Populus trichocarpa]	0.865	0.855	0.718	7e-88
356538539	258	PREDICTED: translocon-associated protein	0.885	0.868	0.741	4e-87
388501254	258	unknown [Lotus japonicus]	0.897	0.879	0.722	5e-87

>gi|225427923|ref|XP_002275216.1| PREDICTED: translocon-associated protein subunit alpha [Vitis vinifera] gi|147821778|emb|CAN77171.1| hypothetical protein VITISV_029842 [Vitis vinifera] gi|297744658|emb|CBI37920.3| unnamed protein product [Vitis vinifera]

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/242 (79%), Positives = 212/242 (87%), Gaps = 3/242 (1%)

Query: 7   RVFFFALLLLASPLLQVAKCQSDSETGVAETEGGDLGIVGEDAQDFGDGTLSPAPGVDTV 66
           RVFF A LLL SP LQVA+CQS+ E   A  EGGDLGIVGEDAQDFGDG+ SPAPGVDTV
Sbjct: 4   RVFFLAFLLLCSPFLQVARCQSEVEVSEAAEEGGDLGIVGEDAQDFGDGSFSPAPGVDTV 63

Query: 67  CIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNN 126
           C+FPKNSAR+V AGEE ELLVGMKNDGESS+NVIA++ASVHLPF+H LLVQNL+ Q FNN
Sbjct: 64  CVFPKNSARLVTAGEEAELLVGMKNDGESSLNVIAVKASVHLPFNHQLLVQNLSTQGFNN 123

Query: 127 ATVPVSAQATFPIHFCCQ---QPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGGFIS 183
           A+VP SAQATFP  F      QPGTFDLVG+IVYE+DQHPYQS FYNGTIEVVE+GGF+S
Sbjct: 124 ASVPASAQATFPYIFAVSKYLQPGTFDLVGTIVYEIDQHPYQSVFYNGTIEVVEAGGFVS 183

Query: 184 IESVFLVTLGIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDASMDEWLQGTAYTQ 243
           IESVFLV LGIALLV FG+WI GQ++ LSKKTK+APKVEVGTGTTDAS+DEWLQGTAYTQ
Sbjct: 184 IESVFLVFLGIALLVFFGVWIRGQIQNLSKKTKRAPKVEVGTGTTDASLDEWLQGTAYTQ 243

Query: 244 SL 245
           SL
Sbjct: 244 SL 245

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|257815608|gb|ACV70142.1| putative translocon-associated protein alpha subunit [Jatropha curcas]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/247 (81%), Positives = 216/247 (87%), Gaps = 6/247 (2%)

Query: 3   MKNFRVFFFALLLLASPLLQVAKCQSDSETGV--AETEGGDLGIVGEDAQDFGDGTLSPA 60
           MKN  VFFFALLLLASPLLQVA+CQSDS+  V  A  E  DLGIVGEDAQDFGDGT SPA
Sbjct: 1   MKNLSVFFFALLLLASPLLQVARCQSDSDVEVTDAAEEVSDLGIVGEDAQDFGDGTFSPA 60

Query: 61  PGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLT 120
           PGV+TVC+FPKNSARVV AGEE ELLVG+KNDGESS+N+ A++ASVHLPFDH LLVQNLT
Sbjct: 61  PGVETVCVFPKNSARVVPAGEEAELLVGIKNDGESSINITAVKASVHLPFDHRLLVQNLT 120

Query: 121 GQAFNNATVPVSAQATFPIHFCC----QQPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVV 176
            QAFNNATVP S QATFPI F       QPG FDLVGSI+YE+DQ  YQSTFYNGTIEVV
Sbjct: 121 AQAFNNATVPPSTQATFPIRFFAVSKYLQPGNFDLVGSIIYEIDQQGYQSTFYNGTIEVV 180

Query: 177 ESGGFISIESVFLVTLGIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDASMDEWL 236
           ESGGF+SIESVFLVTLGIALLVLFGLWIHGQV+ LSKKTK+APKVEVGTGT DASMDEWL
Sbjct: 181 ESGGFLSIESVFLVTLGIALLVLFGLWIHGQVQNLSKKTKRAPKVEVGTGTRDASMDEWL 240

Query: 237 QGTAYTQ 243
           QGTAYTQ
Sbjct: 241 QGTAYTQ 247

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576715|ref|XP_002529245.1| translocon-associated protein, alpha subunit, putative [Ricinus communis] gi|223531281|gb|EEF33123.1| translocon-associated protein, alpha subunit, putative [Ricinus communis]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/247 (80%), Positives = 220/247 (89%), Gaps = 6/247 (2%)

Query: 3   MKNFRVFFFALLLLASPLLQVAKCQSDSETGVAET--EGGDLGIVGEDAQD-FGDGTLSP 59
           MKN RVFFFALLLLASPLLQVAKCQSDSE  +A +  E  DLGIVGEDA D FGDG+ SP
Sbjct: 4   MKNLRVFFFALLLLASPLLQVAKCQSDSEAEIAGSGEEVSDLGIVGEDAHDDFGDGSFSP 63

Query: 60  APGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNL 119
           APGV+TVC+FPKNSARVV AGEETE+LVG+KNDG+SS+NVIA++ASVHLPFDH LLVQNL
Sbjct: 64  APGVNTVCVFPKNSARVVPAGEETEVLVGVKNDGDSSINVIAVKASVHLPFDHRLLVQNL 123

Query: 120 TGQAFNNATVPVSAQATFPIHFCCQ---QPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVV 176
           T QAFNNATVP SAQATFP  F      QPG+FDLVG+I+YE+DQHPYQSTFYNGTIEVV
Sbjct: 124 TAQAFNNATVPASAQATFPYIFAVSKYLQPGSFDLVGTIIYEIDQHPYQSTFYNGTIEVV 183

Query: 177 ESGGFISIESVFLVTLGIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDASMDEWL 236
           ESGGF+SIESVFLVTLGIALLVL GLWIHGQ++ LSKKTK+APKVEVGTGT D S+DEWL
Sbjct: 184 ESGGFLSIESVFLVTLGIALLVLLGLWIHGQIQNLSKKTKRAPKVEVGTGTRDVSLDEWL 243

Query: 237 QGTAYTQ 243
           QGTAYTQ
Sbjct: 244 QGTAYTQ 250

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078092|ref|XP_002305486.1| predicted protein [Populus trichocarpa] gi|118486855|gb|ABK95262.1| unknown [Populus trichocarpa] gi|222848450|gb|EEE85997.1| predicted protein [Populus trichocarpa]

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/243 (78%), Positives = 213/243 (87%), Gaps = 5/243 (2%)

Query: 3   MKNFRVFFFALLLLASPLLQVAKCQSDSETGVAET--EGGDLGIVGEDAQDFGDGTLSPA 60
           MK+ RVFFFALLLLASPLLQVA CQSDS+  VAET  E  DLGIVGEDAQDFGD   SPA
Sbjct: 1   MKHLRVFFFALLLLASPLLQVATCQSDSDAEVAETAEEVSDLGIVGEDAQDFGDANFSPA 60

Query: 61  PGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLT 120
           PGV+TVC+FPKNSAR+V AGEETELLVGMKNDGE  + +IAI+ASVHLPFDH LLVQNL+
Sbjct: 61  PGVETVCVFPKNSARLVTAGEETELLVGMKNDGELPITIIAIRASVHLPFDHKLLVQNLS 120

Query: 121 GQAFNNATVPVSAQATFPIHFCCQ---QPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVE 177
            Q FNNATVP SAQATFP  F      QPG+FDLVG+IVYE+DQHPYQSTF+NGTIEVV+
Sbjct: 121 AQGFNNATVPASAQATFPYIFGVSKYLQPGSFDLVGTIVYEIDQHPYQSTFHNGTIEVVD 180

Query: 178 SGGFISIESVFLVTLGIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDASMDEWLQ 237
           SG F+S+ESVFL+TLGIALLVLFGLW++GQ++ LSKKTK+APKVEVGTGT DASMDEWL+
Sbjct: 181 SGVFLSMESVFLITLGIALLVLFGLWVNGQIQNLSKKTKRAPKVEVGTGTRDASMDEWLE 240

Query: 238 GTA 240
           GTA
Sbjct: 241 GTA 243

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458570|ref|XP_004147020.1| PREDICTED: translocon-associated protein subunit alpha-like [Cucumis sativus] gi|449489703|ref|XP_004158391.1| PREDICTED: translocon-associated protein subunit alpha-like [Cucumis sativus]

 Score =  339 bits (870), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 168/246 (68%), Positives = 204/246 (82%), Gaps = 6/246 (2%)

Query: 1   MEMKNFRVFFFALLLLASPLLQVAKCQSDSETGVAET---EGGDLGIVGEDAQDFGDGTL 57
           M  K FR+FF ALLLLASP LQV +CQSD+E+   E    +  DLGIVGE+  D+GDG+ 
Sbjct: 1   MASKAFRIFFLALLLLASPFLQVVRCQSDAESESEEAAVDDATDLGIVGEEELDYGDGSF 60

Query: 58  SPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQ 117
           S APG+DTVC+FPKNSAR+V AGEETE+L G+KN+G+SS+NVIAI+ASVH  FDH LL+Q
Sbjct: 61  SAAPGIDTVCVFPKNSARLVVAGEETEILAGVKNNGDSSLNVIAIKASVHYTFDHRLLIQ 120

Query: 118 NLTGQAFNNATVPVSAQATFPIHFCCQ---QPGTFDLVGSIVYEVDQHPYQSTFYNGTIE 174
           NL+   FNNA+VP S+QATFP  F      Q G FDLVG+I+YE+DQHPYQSTF+NGTI+
Sbjct: 121 NLSAVGFNNASVPASSQATFPYLFAVSKYLQSGNFDLVGTIIYEIDQHPYQSTFFNGTID 180

Query: 175 VVESGGFISIESVFLVTLGIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDASMDE 234
           V E+GGF+SIESVFLVTLGIAL+VL GLWIHGQ++ LSKKTK+APKVEVGT ++DAS+DE
Sbjct: 181 VAEAGGFLSIESVFLVTLGIALIVLLGLWIHGQIQNLSKKTKRAPKVEVGTKSSDASLDE 240

Query: 235 WLQGTA 240
           WL+GTA
Sbjct: 241 WLEGTA 246

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125556754|gb|EAZ02360.1| hypothetical protein OsI_24464 [Oryza sativa Indica Group]

 Score =  331 bits (849), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 159/239 (66%), Positives = 197/239 (82%), Gaps = 6/239 (2%)

Query: 19  PLLQVAKCQSDSETGVAET-EGGDLGIVGEDAQDFGDGTLSPAPGVDTVCIFPKNSARVV 77
           P++QVA+ QS+ E   AE  +G DLGIV +D Q   DG LSPAPGV+TVC+FPKN+ ++V
Sbjct: 21  PVVQVARAQSEEEAATAEVVDGADLGIVSDDTQVSSDGPLSPAPGVETVCVFPKNAGKIV 80

Query: 78  AAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATF 137
            AGEETELLVG++N+GES++NV+AI +++HLPFDH +  QNLT Q F NA+VPVS QATF
Sbjct: 81  LAGEETELLVGLQNEGESTLNVVAIHSTLHLPFDHKMYGQNLTVQNFFNASVPVSVQATF 140

Query: 138 PIHFCCQ---QPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTLGI 194
           P  F      QPG +DLVG IVYE+DQ+PYQ+ FYNGT+EVVE+GG +S+ESVFL+TLG+
Sbjct: 141 PYTFAVSKFLQPGAYDLVGYIVYEIDQNPYQNVFYNGTVEVVEAGGLLSVESVFLITLGV 200

Query: 195 ALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDASMDEWLQGTAYTQSLSSKSKKKK 253
           ALL LFGLW +GQV+QLSKKTKKAPKVE+GTGTTDA+MDEWL+GTA+ Q   SKSKKKK
Sbjct: 201 ALLGLFGLWAYGQVQQLSKKTKKAPKVELGTGTTDANMDEWLEGTAFAQ--GSKSKKKK 257

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115469972|ref|NP_001058585.1| Os06g0715500 [Oryza sativa Japonica Group] gi|53791783|dbj|BAD53577.1| putative SSR alpha subunit [Oryza sativa Japonica Group] gi|113596625|dbj|BAF20499.1| Os06g0715500 [Oryza sativa Japonica Group] gi|125598503|gb|EAZ38283.1| hypothetical protein OsJ_22661 [Oryza sativa Japonica Group] gi|215704734|dbj|BAG94762.1| unnamed protein product [Oryza sativa Japonica Group] gi|215765401|dbj|BAG87098.1| unnamed protein product [Oryza sativa Japonica Group] gi|215765644|dbj|BAG87341.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  329 bits (844), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 159/239 (66%), Positives = 196/239 (82%), Gaps = 6/239 (2%)

Query: 19  PLLQVAKCQSDSETGVAET-EGGDLGIVGEDAQDFGDGTLSPAPGVDTVCIFPKNSARVV 77
           P++QVA+ QS  E   AE  +G DLGIV +D Q   DG LSPAPGV+TVC+FPKN+ ++V
Sbjct: 21  PVVQVARAQSMEEAATAEVVDGADLGIVSDDTQVSSDGPLSPAPGVETVCVFPKNAGKIV 80

Query: 78  AAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATF 137
            AGEETELLVG++N+GES++NV+AI +++HLPFDH +  QNLT Q F NA+VPVS QATF
Sbjct: 81  LAGEETELLVGLQNEGESTLNVVAIHSTLHLPFDHKMYGQNLTVQNFFNASVPVSVQATF 140

Query: 138 PIHFCCQ---QPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTLGI 194
           P  F      QPG +DLVG IVYE+DQ+PYQ+ FYNGT+EVVE+GG +S+ESVFL+TLG+
Sbjct: 141 PYTFAVSKFLQPGAYDLVGYIVYEIDQNPYQNVFYNGTVEVVEAGGLLSVESVFLITLGV 200

Query: 195 ALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDASMDEWLQGTAYTQSLSSKSKKKK 253
           ALL LFGLW +GQV+QLSKKTKKAPKVE+GTGTTDA+MDEWL+GTA+ Q   SKSKKKK
Sbjct: 201 ALLGLFGLWAYGQVQQLSKKTKKAPKVELGTGTTDANMDEWLEGTAFAQ--GSKSKKKK 257

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105245|ref|XP_002313739.1| predicted protein [Populus trichocarpa] gi|222850147|gb|EEE87694.1| predicted protein [Populus trichocarpa]

 Score =  329 bits (843), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 161/224 (71%), Positives = 185/224 (82%), Gaps = 5/224 (2%)

Query: 22  QVAKCQSDSETGVAET--EGGDLGIVGEDAQDFGDGTLSPAPGVDTVCIFPKNSARVVAA 79
           QVA+ QSDS+  VA T  E  DLGIVGE+AQDFGD   S A GVD VC+FPKNSAR+V A
Sbjct: 20  QVARSQSDSDAEVAGTVEEVSDLGIVGENAQDFGDENFSQALGVDVVCVFPKNSARLVNA 79

Query: 80  GEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPI 139
           GEETELLVG++NDGE  + V+ I+ASVHLPFDH LLVQNL+ Q FNNAT+P SAQATFP 
Sbjct: 80  GEETELLVGVRNDGELPITVVGIRASVHLPFDHKLLVQNLSAQGFNNATIPASAQATFPY 139

Query: 140 HFCCQ---QPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTLGIAL 196
            F      QPG+FDLVG+I++E+DQ PYQSTFYNGTIEVVESGGF+S ESVFLVTLGIAL
Sbjct: 140 IFAVSKYLQPGSFDLVGTIIFEIDQQPYQSTFYNGTIEVVESGGFLSTESVFLVTLGIAL 199

Query: 197 LVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDASMDEWLQGTA 240
           LVLFGLW+  Q++ LSKK+K+A KVEVGTG  DAS+DEWLQGTA
Sbjct: 200 LVLFGLWLQSQIQNLSKKSKRAAKVEVGTGARDASVDEWLQGTA 243

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538539|ref|XP_003537760.1| PREDICTED: translocon-associated protein subunit alpha-like [Glycine max]

 Score =  327 bits (837), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 169/228 (74%), Positives = 196/228 (85%), Gaps = 4/228 (1%)

Query: 22  QVAKCQSDSETGV-AETEGGDLGIVGEDAQDFGDGTLSPAPGVDTVCIFPKNSARVVAAG 80
           QVA+CQSDSE  V A  E  D+GIVG+D QDFGDGT   APG++T+ +FPKNSAR++ AG
Sbjct: 23  QVARCQSDSEDVVEAAEESSDIGIVGDDVQDFGDGTFPSAPGIETISVFPKNSARLITAG 82

Query: 81  EETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIH 140
           EETELLVG+KNDG+SS+NVIAI+ASVHLPFDH +LVQNLT Q FNN +VP SAQATFP  
Sbjct: 83  EETELLVGVKNDGDSSLNVIAIKASVHLPFDHRMLVQNLTAQGFNNGSVPASAQATFPYL 142

Query: 141 FCCQ---QPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTLGIALL 197
           F      Q GTFDLVG+I+YE+D+HPYQSTF+NGT+EVVESG F+S+ESVFLVTLG+ALL
Sbjct: 143 FAVSKFLQAGTFDLVGTIIYEIDEHPYQSTFFNGTVEVVESGAFLSMESVFLVTLGVALL 202

Query: 198 VLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDASMDEWLQGTAYTQSL 245
           VL GLWIHGQ++ LSKKTK+APKVEVGT TTDAS DEWLQGTAYTQSL
Sbjct: 203 VLLGLWIHGQIQYLSKKTKRAPKVEVGTKTTDASTDEWLQGTAYTQSL 250

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501254|gb|AFK38693.1| unknown [Lotus japonicus]

 Score =  326 bits (836), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 167/231 (72%), Positives = 196/231 (84%), Gaps = 4/231 (1%)

Query: 19  PLLQVAKCQSDSETGV-AETEGGDLGIVGEDAQDFGDGTLSPAPGVDTVCIFPKNSARVV 77
           PLLQVA CQSDS+  V A  E  D+GIVG+DAQD+G  T + APG++T+ +FPKNSAR+V
Sbjct: 20  PLLQVAMCQSDSDGAVDATDEASDIGIVGDDAQDYGGETFTSAPGIETISVFPKNSARLV 79

Query: 78  AAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATF 137
            AGE+TELLVG+KN+GESS+NV+AI+ASVHLPFDH +LVQNLT Q FNN +VP SAQATF
Sbjct: 80  TAGEDTELLVGVKNNGESSLNVVAIRASVHLPFDHRMLVQNLTAQIFNNGSVPSSAQATF 139

Query: 138 PIHFCCQ---QPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTLGI 194
           P  F      QPGTFDLVGSIVYE++ +PYQ+TF+NGTIEVVE+GGF+SIESVFLVTLG 
Sbjct: 140 PYLFAVSKFLQPGTFDLVGSIVYEIEDNPYQTTFFNGTIEVVEAGGFLSIESVFLVTLGA 199

Query: 195 ALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDASMDEWLQGTAYTQSL 245
           ALLVL GLWIHGQ++ LSKKTK+APKVEVGT + DAS DEWLQGTAY QSL
Sbjct: 200 ALLVLLGLWIHGQIQNLSKKTKRAPKVEVGTRSIDASTDEWLQGTAYAQSL 250

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
TAIR|locus:2047077	258	AT2G21160 [Arabidopsis thalian	0.952	0.934	0.574	1.5e-67
TAIR|locus:3436229	251	AT2G16595 "AT2G16595" [Arabido	0.936	0.944	0.522	2.1e-61
DICTYBASE|DDB_G0283497	236	ssr1 "translocon-associated pr	0.731	0.783	0.322	3.6e-18
UNIPROTKB|C9IZQ1	298	SSR1 "Translocon-associated pr	0.786	0.667	0.306	1.8e-16
UNIPROTKB|C9J5W0	266	SSR1 "Translocon-associated pr	0.786	0.748	0.306	1.8e-16
UNIPROTKB|E9PAL7	291	SSR1 "Translocon-associated pr	0.786	0.683	0.306	1.8e-16
UNIPROTKB|P43307	286	SSR1 "Translocon-associated pr	0.786	0.695	0.306	1.8e-16
RGD|1310961	319	Ssr1 "signal sequence receptor	0.790	0.626	0.306	2.9e-16
UNIPROTKB|A6QLP7	286	SSR1 "Translocon-associated pr	0.782	0.692	0.310	3.7e-16
UNIPROTKB|F1P4F4	288	SSR1 "Uncharacterized protein"	0.786	0.690	0.306	4.7e-16

TAIR|locus:2047077 AT2G21160 [Arabidopsis thaliana (taxid:3702)]

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 143/249 (57%), Positives = 176/249 (70%)

Query:     3 MKNFRVXXXXXXXXXXXXXQVAKCQSDSETG---VAETEGGDLG-IVGEDAQDFGDGTLS 58
             M N RV             QVA+CQSD+E     V +  G +    V ED  D  D  LS
Sbjct:     1 MMNLRVLFLALLLLASPLLQVARCQSDAEDHSSLVDDVVGENTDDAVEEDDHDL-DMNLS 59

Query:    59 PAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQN 118
               PGV+TVC+FPKNSA++V AGEETELLVG+KN+G++ V V+ I+ASVHLP+DH LLVQN
Sbjct:    60 SFPGVETVCVFPKNSAKLVPAGEETELLVGLKNEGKTRVGVMGIRASVHLPYDHKLLVQN 119

Query:   119 LTGQAFNNATVPVSAQATFPIHFCCQQ---PGTFDLVGSIVYEVDQHPYQSTFYNGTIEV 175
             LT    NNA++P S QATFP  F   Q   PG FDLVG I+Y+V+  PYQS FYNGTIEV
Sbjct:   120 LTMLRLNNASIPTSLQATFPYIFAVSQYLQPGAFDLVGYIIYDVEGKPYQSVFYNGTIEV 179

Query:   176 VESGGFISIESVFLVTLGIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDASMDEW 235
             VESGG +S ESVFL+TLGI LL+L GLW + QV++L+KKTKK  KVEVGT +T+AS+DEW
Sbjct:   180 VESGGLLSGESVFLLTLGIGLLLLLGLWAYSQVQRLTKKTKKVSKVEVGTRSTEASLDEW 239

Query:   236 LQGTAYTQS 244
             L+GT   ++
Sbjct:   240 LEGTTLAKT 248

GO:0005576 "extracellular region" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:3436229 AT2G16595 "AT2G16595" [Arabidopsis thaliana (taxid:3702)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 127/243 (52%), Positives = 167/243 (68%)

Query:     5 NFRVXXXXXXXXXXXXXQVAKCQSDSETGVAETEGGDLGIVGEDAQDFGDGTLSPAPGVD 64
             +FR+             +VA CQSDSE    E    D+G    DA++     L+ APG++
Sbjct:     4 SFRLLFFAFLLLVSPFLKVALCQSDSEDSGFEVS--DVGEEESDAEEVFGLELTSAPGIE 61

Query:    65 TVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAF 124
             T+C+FPKNSA+++ AG ETELLVGMKNDG+S+V+++A++ S+HLPFD +  VQNLT  +F
Sbjct:    62 TLCVFPKNSAKIIKAGVETELLVGMKNDGQSNVDIVAVKGSLHLPFDQNA-VQNLTALSF 120

Query:   125 NNATVPVSAQATFPIHFCCQ---QPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGGF 181
             +NA+VP SAQAT P  F      Q G FD VG+I+YE+D  PYQS FYNGTIEVVE G  
Sbjct:   121 SNASVPTSAQATLPYAFAVSKFLQAGAFDFVGTIIYEIDGKPYQSIFYNGTIEVVEDGPL 180

Query:   182 ISIESVFLVTLGIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDASMDEWLQGTAY 241
               +ESVFL  L I ++    ++I   +K ++KKTK+APKVEVGT T DAS DEWL+GT+Y
Sbjct:   181 FRMESVFLSGLLIFVIAFLAIYIQNVLKHMTKKTKRAPKVEVGTATKDASHDEWLEGTSY 240

Query:   242 TQS 244
             TQS
Sbjct:   241 TQS 243

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

DICTYBASE|DDB_G0283497 ssr1 "translocon-associated protein TRAP alpha subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 62/192 (32%), Positives = 93/192 (48%)

Query:    58 SPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQ 117
             +P   V    IFP N  +  AAG   E+LVG  N+ + ++N+  I AS++ P D S+ +Q
Sbjct:    34 TPTSDVSFSYIFPDNQDKNFAAGSVVEVLVGFTNNADKALNITHIFASLNHPQDFSVFIQ 93

Query:   118 NLTGQAFNNATVPVSAQATFPIHFCCQQ---PGTFDLVGSIVYEVDQHPYQSTFYNGTIE 174
             N T   F  A V     AT    F   +   P  F L+ S+ Y+     +  TF+N TI 
Sbjct:    94 NYTRGDFGIA-VEKGHHATLAYRFVPSEYLEPREFGLLISLEYQDGAQNFTQTFFNSTIN 152

Query:   175 VVESGGFISIESVFLVTLGIALLVLFGLWIHGQV-KQLSKKT-KKAPKVEVGTGTTDASM 232
             + E      ++S FL+ LG+  +   G  ++G++ KQ   +T  K  K  V   T D + 
Sbjct:   153 ITEKETSFDMDSFFLILLGLGFVGGIGYIVYGKMPKQKKVRTVSKVNKNAVRVETEDETA 212

Query:   233 DEWLQGTAYTQS 244
              EWL GT+   S
Sbjct:   213 -EWLSGTSAASS 223

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|C9IZQ1 SSR1 "Translocon-associated protein subunit alpha" [Homo sapiens (taxid:9606)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 66/215 (30%), Positives = 101/215 (46%)

Query:    29 DSETGVAETEGGDLGIVGEDAQDFGDGTLSPAPGVDTVCIFPKNSARVVAAGEETELLVG 88
             D E  V E E  DL +  ++ +D   G    +P  DT  +F K       A    + LVG
Sbjct:    51 DDEAEVEEDEPTDL-VEDKEEEDVS-GEPEASPSADTTILFVKGED--FPANNIVKFLVG 106

Query:    89 MKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQP-- 146
               N G     V ++ AS   P D+   +QN T    N   VP   QATF   F   +P  
Sbjct:   107 FTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPLNTV-VPPQRQATFEYSFIPAEPMG 165

Query:   147 GT-FDLVGSIVY-EVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGL 202
             G  F LV ++ Y +++ + +Q   +N T+ V+E    +  E++F+     G+ LLV+ GL
Sbjct:   166 GRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGL 225

Query:   203 WIHGQVKQLSKKTKKAPKVEVGTGT-TDASMDEWL 236
               H Q+ +  K+ +   KVE+GT +  D  M  W+
Sbjct:   226 --H-QLLESRKRKRPIQKVEMGTSSQNDVDMS-WI 256

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|C9J5W0 SSR1 "Translocon-associated protein subunit alpha" [Homo sapiens (taxid:9606)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 66/215 (30%), Positives = 101/215 (46%)

Query:    29 DSETGVAETEGGDLGIVGEDAQDFGDGTLSPAPGVDTVCIFPKNSARVVAAGEETELLVG 88
             D E  V E E  DL +  ++ +D   G    +P  DT  +F K       A    + LVG
Sbjct:    51 DDEAEVEEDEPTDL-VEDKEEEDVS-GEPEASPSADTTILFVKGED--FPANNIVKFLVG 106

Query:    89 MKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQP-- 146
               N G     V ++ AS   P D+   +QN T    N   VP   QATF   F   +P  
Sbjct:   107 FTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPLNTV-VPPQRQATFEYSFIPAEPMG 165

Query:   147 GT-FDLVGSIVY-EVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGL 202
             G  F LV ++ Y +++ + +Q   +N T+ V+E    +  E++F+     G+ LLV+ GL
Sbjct:   166 GRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGL 225

Query:   203 WIHGQVKQLSKKTKKAPKVEVGTGT-TDASMDEWL 236
               H Q+ +  K+ +   KVE+GT +  D  M  W+
Sbjct:   226 --H-QLLESRKRKRPIQKVEMGTSSQNDVDMS-WI 256

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|E9PAL7 SSR1 "Translocon-associated protein subunit alpha" [Homo sapiens (taxid:9606)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 66/215 (30%), Positives = 101/215 (46%)

Query:    29 DSETGVAETEGGDLGIVGEDAQDFGDGTLSPAPGVDTVCIFPKNSARVVAAGEETELLVG 88
             D E  V E E  DL +  ++ +D   G    +P  DT  +F K       A    + LVG
Sbjct:    51 DDEAEVEEDEPTDL-VEDKEEEDVS-GEPEASPSADTTILFVKGED--FPANNIVKFLVG 106

Query:    89 MKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQP-- 146
               N G     V ++ AS   P D+   +QN T    N   VP   QATF   F   +P  
Sbjct:   107 FTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPLNTV-VPPQRQATFEYSFIPAEPMG 165

Query:   147 GT-FDLVGSIVY-EVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGL 202
             G  F LV ++ Y +++ + +Q   +N T+ V+E    +  E++F+     G+ LLV+ GL
Sbjct:   166 GRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGL 225

Query:   203 WIHGQVKQLSKKTKKAPKVEVGTGT-TDASMDEWL 236
               H Q+ +  K+ +   KVE+GT +  D  M  W+
Sbjct:   226 --H-QLLESRKRKRPIQKVEMGTSSQNDVDMS-WI 256

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|P43307 SSR1 "Translocon-associated protein subunit alpha" [Homo sapiens (taxid:9606)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 66/215 (30%), Positives = 101/215 (46%)

Query:    29 DSETGVAETEGGDLGIVGEDAQDFGDGTLSPAPGVDTVCIFPKNSARVVAAGEETELLVG 88
             D E  V E E  DL +  ++ +D   G    +P  DT  +F K       A    + LVG
Sbjct:    51 DDEAEVEEDEPTDL-VEDKEEEDVS-GEPEASPSADTTILFVKGED--FPANNIVKFLVG 106

Query:    89 MKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQP-- 146
               N G     V ++ AS   P D+   +QN T    N   VP   QATF   F   +P  
Sbjct:   107 FTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPLNTV-VPPQRQATFEYSFIPAEPMG 165

Query:   147 GT-FDLVGSIVY-EVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGL 202
             G  F LV ++ Y +++ + +Q   +N T+ V+E    +  E++F+     G+ LLV+ GL
Sbjct:   166 GRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGL 225

Query:   203 WIHGQVKQLSKKTKKAPKVEVGTGT-TDASMDEWL 236
               H Q+ +  K+ +   KVE+GT +  D  M  W+
Sbjct:   226 --H-QLLESRKRKRPIQKVEMGTSSQNDVDMS-WI 256

GO:0016021 "integral to membrane" evidence=IEA

GO:0006613 "cotranslational protein targeting to membrane" evidence=TAS

GO:0008284 "positive regulation of cell proliferation" evidence=TAS

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0006987 "activation of signaling protein activity involved in unfolded protein response" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

RGD|1310961 Ssr1 "signal sequence receptor, alpha" [Rattus norvegicus (taxid:10116)]

 Score = 203 (76.5 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 66/215 (30%), Positives = 99/215 (46%)

Query:    29 DSETGVAETEGGDLGIVGEDAQDFGDGTLSPAPGVDTVCIFPKNSARVVAAGEETELLVG 88
             D E  V E E  DL    E+ +D        +P  DT  +F K       A    + LVG
Sbjct:    51 DDEAEVEEDEPTDLAEEKEEEEDVSSEP-EASPSADTTILFVKGED--FPANNIVKFLVG 107

Query:    89 MKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQP-- 146
               N G     V ++ AS   P D+   +QN T    N   VP   QATF   F   +P  
Sbjct:   108 FTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPLNTI-VPPQRQATFEYSFIPAEPMG 166

Query:   147 GT-FDLVGSIVY-EVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGL 202
             G  F LV ++ Y +++ + +Q   +N T+ V+E    +  E++F+     G+ LLV+ GL
Sbjct:   167 GRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVVVGL 226

Query:   203 WIHGQVKQLSKKTKKAPKVEVGTGT-TDASMDEWL 236
               H Q+ +  K+ +   KVE+GT +  D  M  W+
Sbjct:   227 --H-QLLESRKRKRPIQKVEMGTSSQNDVDMS-WI 257

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|A6QLP7 SSR1 "Translocon-associated protein subunit alpha" [Bos taurus (taxid:9913)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 67/216 (31%), Positives = 100/216 (46%)

Query:    29 DSETGVAETEGGDLGIVGEDAQ-DFGDGTLSPAPGVDTVCIFPKNSARVVAAGEETELLV 87
             D E  V E E  DL    ED + D   G    +P  DT  +F K       A    + LV
Sbjct:    51 DDEAEVEEDEPTDLA---EDKEEDDVSGEPEASPSADTTILFVKGED--FPANNIVKFLV 105

Query:    88 GMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQP- 146
             G  N G     V ++ AS   P D+   +QN T    N   VP   QATF   F   +P 
Sbjct:   106 GFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPLNTV-VPPQRQATFEYSFIPAEPM 164

Query:   147 -GT-FDLVGSIVY-EVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFG 201
              G  F LV ++ Y +++ + +Q   +N T+ ++E    +  E++F+     G+ LLV+ G
Sbjct:   165 GGRPFGLVINLNYKDLNGNVFQDAVFNQTVTIIEREDGLDGETIFMYMFLAGLGLLVVVG 224

Query:   202 LWIHGQVKQLSKKTKKAPKVEVGTGT-TDASMDEWL 236
             L  H Q+ +  K+ +   KVE+GT +  D  M  W+
Sbjct:   225 L--H-QLLESRKRKRPIQKVEMGTSSQNDVDMS-WI 256

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1P4F4 SSR1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 66/215 (30%), Positives = 98/215 (45%)

Query:    29 DSETGVAETEGGDLGIVGEDAQDFGDGTLSPAPGVDTVCIFPKNSARVVAAGEETELLVG 88
             D E  V E E  DL    E+ +D   G    +P  DT  +F K       A    + LVG
Sbjct:    53 DDEAEVEEDEPTDLTEEKEE-EDLS-GEPKASPSADTTILFVKGED--FPANNIVKFLVG 108

Query:    89 MKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQP-- 146
               N G     V ++ AS   P D+   +QN T    N   VP   QATF   F   +P  
Sbjct:   109 FTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPLNTV-VPPQRQATFEYSFIPAEPMG 167

Query:   147 GT-FDLVGSIVY-EVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGL 202
             G  F LV ++ Y + + + +Q   +N T+ ++E    +  E++F+     G+ LLV+ GL
Sbjct:   168 GRPFGLVINLNYRDANGNMFQDAVFNQTVTIIEKEDGLDGETIFMYMFLAGLGLLVIVGL 227

Query:   203 WIHGQVKQLSKKTKKAPKVEVGTGT-TDASMDEWL 236
               H Q+ +  K+ +   KVE+GT    D  M  W+
Sbjct:   228 --H-QLLESRKRKRPVQKVEMGTSNQNDVDMS-WI 258

GO:0005783 "endoplasmic reticulum" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	253
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	6e-20

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 86.0 bits (213), Expect = 6e-20
 Identities = 71/274 (25%), Positives = 115/274 (41%), Gaps = 31/274 (11%)

Query: 3   MKNFRVFFFALLLLASPLL------------QVAKCQSDSETGVAETEGGDLGIVGEDAQ 50
           MK  ++    LL   + LL            Q      ++E  V + +  D  +V ED  
Sbjct: 1   MKLPKLLLLTLLAFPAVLLTFGNGKGPFASAQDLTEDEEAEDDVVDEDEEDEAVVEEDEN 60

Query: 51  DFG------DGTLSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQA 104
           +        +G +  +P  DT  +F K       AG+  + LVG  N G     V +++A
Sbjct: 61  ELTEEEEDEEGEVKASPDADTTILFVKPED--FPAGKPVKFLVGFTNKGSEDFVVESLEA 118

Query: 105 SVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQP---GTFDLVGSIVY-EVD 160
           S   P D+   +QN T   +N   V    QATF   F   +P     F LV ++ Y + D
Sbjct: 119 SFRYPQDYQYYIQNFTALPYNT-VVKPKHQATFEYSFIPAEPFAGRPFGLVINLNYRDAD 177

Query: 161 QHPYQSTFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGLWIHGQVKQLSKKTKKA 218
            + +Q   +N T+ + E    +  E+ FL     G+ LL+L G     Q+ +  K+ +  
Sbjct: 178 GNVFQDAVFNQTVTITEVDEGLDGETFFLYVFLAGLGLLLLVGGH---QLLESRKRKRPR 234

Query: 219 PKVEVGTGTTDASMDEWLQGTAYTQSLSSKSKKK 252
            KVE+GT + +     W+      Q L+  S K+
Sbjct: 235 QKVEMGTSSDNDVDYSWIPQETLNQ-LNKASPKR 267

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	253
KOG1631	261	consensus Translocon-associated complex TRAP, alph	100.0
PF03896	285	TRAP_alpha: Translocon-associated protein (TRAP),	100.0
PF05753	181	TRAP_beta: Translocon-associated protein beta (TRA	97.4
PF10633	78	NPCBM_assoc: NPCBM-associated, NEW3 domain of alph	97.16
PF07760	287	DUF1616: Protein of unknown function (DUF1616); In	95.71
PF07705	101	CARDB: CARDB; InterPro: IPR011635 The APHP (acidic	94.27
PF12690	82	BsuPI: Intracellular proteinase inhibitor; InterPr	94.18
PF06159	249	DUF974: Protein of unknown function (DUF974); Inte	92.54
PF14874	102	PapD-like: Flagellar-associated PapD-like	91.75
PF13473	104	Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D	91.44
PF11044	49	TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 tran	91.05
COG1470	513	Predicted membrane protein [Function unknown]	89.91
PF07610	45	DUF1573: Protein of unknown function (DUF1573); In	89.06
PF06030	121	DUF916: Bacterial protein of unknown function (DUF	88.55
PF06280	112	DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0	86.67
PF04744	381	Monooxygenase_B: Monooxygenase subunit B protein;	86.37
PF00927	107	Transglut_C: Transglutaminase family, C-terminal i	83.55
PF07919	554	Gryzun: Gryzun, putative trafficking through Golgi	83.46
KOG3317	188	consensus Translocon-associated complex TRAP, beta	83.3
PF11906	149	DUF3426: Protein of unknown function (DUF3426); In	80.66

>KOG1631 consensus Translocon-associated complex TRAP, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-70  Score=479.64  Aligned_cols=240  Identities=39%  Similarity=0.521  Sum_probs=223.3

Q ss_pred             hhHHHHHHHHHhhhcccceeeccCccccCccccccCccccccCCCccCCCCCCCCCCCeeEEEEccCCCcceeeCCceEE
Q 036697            5 NFRVFFFALLLLASPLLQVAKCQSDSETGVAETEGGDLGIVGEDAQDFGDGTLSPAPGVDTVCIFPKNSARVVAAGEETE   84 (253)
Q Consensus         5 ~~~~~~~~~~ll~s~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~sP~v~t~~~Fp~~~~~~l~nG~~~~   84 (253)
                      .|++|.+..+++++|+.++|+||+|-+||.+++|++|+.+++||++++.  .+.+||+++|.++||++....+|+|++++
T Consensus         2 ~L~Vl~l~~l~~~ap~~~~A~~~~~~eDD~v~~e~tddAv~eed~d~Dl--~~~asP~adt~~lF~k~s~~~~pagk~vk   79 (261)
T KOG1631|consen    2 MLMVLPLSTLFLLAPLGFCAVAAADVEDDLVDGEVTDDAVKEEDEDDDL--TIDASPDADTAFLFVKPSDANFPAGKPVK   79 (261)
T ss_pred             ceehhHHHHHHHhCchhhhhHHHhhcccccccccccccccccccccccc--cccCCCCCCeEEEecccccccCCCCCceE
Confidence            3678899999999999999999988888888889999888766665543  36699999999999999998899999999


Q ss_pred             EEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeee---eCCceEeEEEEEEE-EeC
Q 036697           85 LLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCC---QQPGTFDLVGSIVY-EVD  160 (253)
Q Consensus        85 ~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~---l~p~~~~L~i~l~y-d~~  160 (253)
                      +||||+|+|.++|.|.++++|||||+||+++|||||+.+|| ++|||+.|+||+|.|.+   |+||+|+|+++++| |++
T Consensus        80 fLiGftNkG~edfvV~~~eaSfr~P~D~~~~iQNft~~~~N-~~Vpp~~qaT~~Y~F~~se~~~grpFgLv~~i~Y~D~d  158 (261)
T KOG1631|consen   80 FLIGFTNKGEEDFVVEYAEASFRYPTDHSYHIQNFTALEYN-RSVPPSEQATLPYGFAVSETFAGRPFGLVGNIIYQDAD  158 (261)
T ss_pred             EEEEeccCCceeEEEEEEeeeeecCccHHHHHhhhhhhhcc-ccCCCcceeeeeeeeeehhhcCCCccceEEEEEEecCC
Confidence            99999999999999999999999999999999999999999 89999999999999999   99999999999999 999


Q ss_pred             CceEEEeeecceEEEEeCCCCcChhHHHHHHHHHHHHHHHHHHhhheeecccccccCCCcccccCCCCCCCCCCcccccc
Q 036697          161 QHPYQSTFYNGTIEVVESGGFISIESVFLVTLGIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDASMDEWLQGTA  240 (253)
Q Consensus       161 g~~y~~~~fN~TVtVvE~~s~fD~e~iFLyl~lla~~~~~gy~vy~~~~~~~kk~kka~kve~gT~~~~~~d~eWIP~~h  240 (253)
                      |++||..+|||||+|+|.+++||+|++|||++++|+..++++|.++.+.+++||+||++|||+||++.++.|+||||+++
T Consensus       159 G~~yq~~vyN~TI~VvE~~~gl~GETvFL~~lligl~llllv~~~q~L~~~sKk~~~~~kVE~GTas~~~vd~eWip~~t  238 (261)
T KOG1631|consen  159 GNVYQSAVYNQTIEVVEDDSGLSGETVFLYILLIGLSLLLLVLSQQFLSKLSKKTKKRRKVEVGTASKDAVDDEWIPGTT  238 (261)
T ss_pred             CCchhhhhccceEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccceEeecccCcccccccccccHh
Confidence            99999999999999999999999999999999999999999887766667778888889999999998899999999999


Q ss_pred             ccccCCC
Q 036697          241 YTQSLSS  247 (253)
Q Consensus       241 l~~~~~~  247 (253)
                      ++|+.|+
T Consensus       239 l~q~~k~  245 (261)
T KOG1631|consen  239 LKQKSKR  245 (261)
T ss_pred             HHhhccC
Confidence            9998885

>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane []

Probab=100.00  E-value=3.8e-68  Score=485.51  Aligned_cols=209  Identities=37%  Similarity=0.555  Sum_probs=184.0

Q ss_pred             cccccCccccccCC----C----ccCCCCCCCCCCCeeEEEEccCCCcceeeCCceEEEEEEEEeCCCCcEEEEEEeeee
Q 036697           35 AETEGGDLGIVGED----A----QDFGDGTLSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASV  106 (253)
Q Consensus        35 ~~~e~~d~~~~~~~----~----~~~~~~~~~~sP~v~t~~~Fp~~~~~~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf  106 (253)
                      +++|++|+.+++||    .    ++++++++++||+++|+++||++ ..+||||+++++||||+|+|+++++|.+|.|||
T Consensus        46 ~~~e~~d~~~~~ed~~~~~e~~dd~~e~~~~~~sP~adt~~~F~~~-~~~l~aG~~~~~LvgftN~g~~~~~V~~i~aSl  124 (285)
T PF03896_consen   46 VEEEEEDEAEVEEDESIETEVEDDDEEDGELKPSPDADTTILFPKP-TKKLPAGEPVKFLVGFTNKGSEPFTVESIEASL  124 (285)
T ss_pred             ccccccccceecccCCCCCcccccccccccccccCCceEEEEeccc-cccccCCCeEEEEEEEEeCCCCCEEEEEEeeee
Confidence            34455565565544    1    11122468999999999999999 789999999999999999999999999999999


Q ss_pred             ccccccCeeEeeccccccCCeeecCCCceEEeEEeee---eCCceEeEEEEEEE-EeCCceEEEeeecceEEEEeCCCCc
Q 036697          107 HLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCC---QQPGTFDLVGSIVY-EVDQHPYQSTFYNGTIEVVESGGFI  182 (253)
Q Consensus       107 ~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~---l~p~~~~L~i~l~y-d~~g~~y~~~~fN~TVtVvE~~s~f  182 (253)
                      |+|+||+++|||||+++|+ +.|+||+++||+|+|.|   |+||+|+|+++++| |.+|+.|++++||+||+|||++++|
T Consensus       125 ~~p~d~~~~iqNfTa~~y~-~~V~pg~~aT~~YsF~~~~~l~pr~f~L~i~l~y~d~~g~~y~~~~fN~TV~IvE~~~~~  203 (285)
T PF03896_consen  125 RYPQDYSYYIQNFTAVRYN-REVPPGEEATFPYSFTPSEELAPRPFGLVINLIYEDSDGNQYQVTVFNGTVTIVEPESGF  203 (285)
T ss_pred             cCccccceEEEeecccccC-cccCCCCeEEEEEEEecchhcCCcceEEEEEEEEEeCCCCEEEEEEecceEEEeecCCCc
Confidence            9999999999999999999 89999999999999999   99999999999999 8999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhhheeecccccccCCCcccccCCCCCCCCCCccccccccccCC
Q 036697          183 SIESVFLVTLGIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDASMDEWLQGTAYTQSLS  246 (253)
Q Consensus       183 D~e~iFLyl~lla~~~~~gy~vy~~~~~~~kk~kka~kve~gT~~~~~~d~eWIP~~hl~~~~~  246 (253)
                      |||+||||+||+|++++++|++|+.+.. .+|+|+++|||+||++.++||+||||+|||+|++|
T Consensus       204 D~e~iFLY~~l~a~~~l~l~~~~~~l~~-~~kkr~~~~VE~GT~~~~~~D~eWIp~~~l~~~~k  266 (285)
T PF03896_consen  204 DPETIFLYLFLAALGVLGLYFVYQFLPS-SKKKRKAKKVETGTSSTNDVDEEWIPKEHLNRPNK  266 (285)
T ss_pred             ChhhhhHHHHHHHHHHHHHHHHHHHHHh-ccccccCCcccCCCCCCCCCCcccCCHHHhhhccC
Confidence            9999999999999988888877765543 34445578899999998889999999999997544

; GO: 0005783 endoplasmic reticulum

>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins

Probab=97.40  E-value=0.007  Score=52.61  Aligned_cols=87  Identities=18%  Similarity=0.319  Sum_probs=67.6

Q ss_pred             ceeeCCceEEEEEEEEeCCCCc-EEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeeeeCCceEeEE-
Q 036697           75 RVVAAGEETELLVGMKNDGESS-VNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTFDLV-  152 (253)
Q Consensus        75 ~~l~nG~~~~~lvg~~N~g~~~-~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~l~p~~~~L~-  152 (253)
                      .-++.|+.+.+-+.+.|.|+.+ +.|...+.+| .|++| .++.-.+..++.  .|+||+..+..|.-.|...|.|.+. 
T Consensus        32 ~~~v~g~~v~V~~~iyN~G~~~A~dV~l~D~~f-p~~~F-~lvsG~~s~~~~--~i~pg~~vsh~~vv~p~~~G~f~~~~  107 (181)
T PF05753_consen   32 KYLVEGEDVTVTYTIYNVGSSAAYDVKLTDDSF-PPEDF-ELVSGSLSASWE--RIPPGENVSHSYVVRPKKSGYFNFTP  107 (181)
T ss_pred             ccccCCcEEEEEEEEEECCCCeEEEEEEECCCC-Ccccc-EeccCceEEEEE--EECCCCeEEEEEEEeeeeeEEEEccC
Confidence            4678999999999999999966 5588888788 34566 557777777775  7999999999999999888888877 


Q ss_pred             EEEEE-EeCC-ceEE
Q 036697          153 GSIVY-EVDQ-HPYQ  165 (253)
Q Consensus       153 i~l~y-d~~g-~~y~  165 (253)
                      ..+.| +.++ ..-|
T Consensus       108 a~VtY~~~~~~~~~~  122 (181)
T PF05753_consen  108 AVVTYRDSEGAKELQ  122 (181)
T ss_pred             EEEEEECCCCCceeE
Confidence            45666 5544 4433

The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane

>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known

Probab=97.16  E-value=0.0022  Score=47.56  Aligned_cols=73  Identities=18%  Similarity=0.365  Sum_probs=45.5

Q ss_pred             eCCceEEEEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeee---eCCceEeEEEE
Q 036697           78 AAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCC---QQPGTFDLVGS  154 (253)
Q Consensus        78 ~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~---l~p~~~~L~i~  154 (253)
                      .+|+.+++-+.++|.|..++.-.  .=++..|.....-...   ...  ..|+||++.++.+...+   -.+|+|.|.+.
T Consensus         2 ~~G~~~~~~~tv~N~g~~~~~~v--~~~l~~P~GW~~~~~~---~~~--~~l~pG~s~~~~~~V~vp~~a~~G~y~v~~~   74 (78)
T PF10633_consen    2 TPGETVTVTLTVTNTGTAPLTNV--SLSLSLPEGWTVSASP---ASV--PSLPPGESVTVTFTVTVPADAAPGTYTVTVT   74 (78)
T ss_dssp             -TTEEEEEEEEEE--SSS-BSS---EEEEE--TTSE---EE---EEE----B-TTSEEEEEEEEEE-TT--SEEEEEEEE
T ss_pred             CCCCEEEEEEEEEECCCCceeeE--EEEEeCCCCccccCCc---ccc--ccCCCCCEEEEEEEEECCCCCCCceEEEEEE
Confidence            57999999999999998775433  3344458887522222   222  26999999999999999   88999999998


Q ss_pred             EEE
Q 036697          155 IVY  157 (253)
Q Consensus       155 l~y  157 (253)
                      +-|
T Consensus        75 a~y   77 (78)
T PF10633_consen   75 ARY   77 (78)
T ss_dssp             EE-
T ss_pred             EEe
Confidence            876

It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.

>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins

Probab=95.71  E-value=0.26  Score=45.41  Aligned_cols=90  Identities=18%  Similarity=0.148  Sum_probs=64.3

Q ss_pred             eeeCCceEEEEEEEEeCCC--CcEEEE-EEeeeeccccccCeeEeecccc-ccCCeeecCCCceEEeEEeee-eCCceEe
Q 036697           76 VVAAGEETELLVGMKNDGE--SSVNVI-AIQASVHLPFDHSLLVQNLTGQ-AFNNATVPVSAQATFPIHFCC-QQPGTFD  150 (253)
Q Consensus        76 ~l~nG~~~~~lvg~~N~g~--~~~~V~-~i~gSf~~P~d~~~~vqNfTa~-~~~~~~V~pg~~atf~Y~F~~-l~p~~~~  150 (253)
                      ++..|++.++-|++.|++.  ..++++ .+.+....|.+  ..+.+-+.. ++. ..+..|++.+.+|.|.+ +.+...+
T Consensus       186 ~l~~ge~~~v~vgI~NhE~~~~~Ytv~v~l~~~~~~~~~--~~~~~~~~l~~~~-~~L~~n~t~~~~~~~~~~~~~~~~~  262 (287)
T PF07760_consen  186 NLTSGEPGTVIVGIENHEGRPENYTVVVVLQNVTWNPNN--YNVMESTVLDRPI-VTLADNETWEQPYKFTPFITGENPR  262 (287)
T ss_pred             eEEcCCcEEEEEEEEcCCCCcEEEEEEEEEecccccccc--ccccchhcccceE-EEeCCCCeEEEEEEEEEecCCCceE
Confidence            6899999999999999995  455555 45555555543  233333222 233 47888999999999999 7777888


Q ss_pred             EEEEEEEE--eCCceEEEee
Q 036697          151 LVGSIVYE--VDQHPYQSTF  168 (253)
Q Consensus       151 L~i~l~yd--~~g~~y~~~~  168 (253)
                      +...++.+  ...+.|+...
T Consensus       263 l~~lLY~~~~~~~~ayr~~~  282 (287)
T PF07760_consen  263 LEYLLYKGGVNSENAYRSLH  282 (287)
T ss_pred             EEEEEEcCCCCcchheeEEE
Confidence            88877774  4667777654

The region in question is approximately 330 amino acid residues long.

>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins

Probab=94.27  E-value=0.92  Score=33.69  Aligned_cols=84  Identities=17%  Similarity=0.268  Sum_probs=47.2

Q ss_pred             CCeeEEEEccCCCcceeeCCceEEEEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEE
Q 036697           61 PGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIH  140 (253)
Q Consensus        61 P~v~t~~~Fp~~~~~~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~  140 (253)
                      ||..+......   .....|++.++-+.++|.|..+..  .+.-.|.. .+  ..+...   ..  ..++||++.++.+.
T Consensus         2 pDL~v~~~~~~---~~~~~g~~~~i~~~V~N~G~~~~~--~~~v~~~~-~~--~~~~~~---~i--~~L~~g~~~~v~~~   68 (101)
T PF07705_consen    2 PDLTVSITVSP---SNVVPGEPVTITVTVKNNGTADAE--NVTVRLYL-DG--NSVSTV---TI--PSLAPGESETVTFT   68 (101)
T ss_dssp             --EEE-EEEC----SEEETTSEEEEEEEEEE-SSS-BE--EEEEEEEE-TT--EEEEEE---EE--SEB-TTEEEEEEEE
T ss_pred             CCEEEEEeeCC---CcccCCCEEEEEEEEEECCCCCCC--CEEEEEEE-CC--ceeccE---EE--CCcCCCcEEEEEEE
Confidence            67776333322   367899999999999999986522  12222221 11  112111   11  26899999999988


Q ss_pred             eeeeCCceEeEEEEEEE
Q 036697          141 FCCQQPGTFDLVGSIVY  157 (253)
Q Consensus       141 F~~l~p~~~~L~i~l~y  157 (253)
                      +.+-.+|.|.|.+.+.+
T Consensus        69 ~~~~~~G~~~i~~~iD~   85 (101)
T PF07705_consen   69 WTPPSPGSYTIRVVIDP   85 (101)
T ss_dssp             EE-SS-CEEEEEEEEST
T ss_pred             EEeCCCCeEEEEEEEee
Confidence            88878898886655543

; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.

>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo

Probab=94.18  E-value=0.29  Score=37.17  Aligned_cols=64  Identities=16%  Similarity=0.252  Sum_probs=37.7

Q ss_pred             EEEEEEEEeCCCCcEEEEEEeeeeccccccCeeEee--------------ccccccCCeeecCCCceEEeEEeee--eCC
Q 036697           83 TELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQN--------------LTGQAFNNATVPVSAQATFPIHFCC--QQP  146 (253)
Q Consensus        83 ~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqN--------------fTa~~~~~~~V~pg~~atf~Y~F~~--l~p  146 (253)
                      +++.+.++|++++++++.+=.|.-     +++.|.|              ||..--. ..++||++.++......  +.|
T Consensus         2 v~~~l~v~N~s~~~v~l~f~sgq~-----~D~~v~d~~g~~vwrwS~~~~FtQal~~-~~l~pGe~~~~~~~~~~~~~~~   75 (82)
T PF12690_consen    2 VEFTLTVTNNSDEPVTLQFPSGQR-----YDFVVKDKEGKEVWRWSDGKMFTQALQE-ETLEPGESLTYEETWDLKDLSP   75 (82)
T ss_dssp             EEEEEEEEE-SSS-EEEEESSS-------EEEEEE-TT--EEEETTTT-------EE-EEE-TT-EEEEEEEESS----S
T ss_pred             EEEEEEEEeCCCCeEEEEeCCCCE-----EEEEEECCCCCEEEEecCCchhhheeeE-EEECCCCEEEEEEEECCCCCCC
Confidence            478899999999999987655532     2223332              2222223 78999999999988877  569


Q ss_pred             ceEeEE
Q 036697          147 GTFDLV  152 (253)
Q Consensus       147 ~~~~L~  152 (253)
                      |.|.|.
T Consensus        76 G~Y~~~   81 (82)
T PF12690_consen   76 GEYTLE   81 (82)
T ss_dssp             EEEEEE
T ss_pred             ceEEEe
Confidence            999875

It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.

>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins

Probab=92.54  E-value=1.1  Score=40.57  Aligned_cols=88  Identities=17%  Similarity=0.243  Sum_probs=69.7

Q ss_pred             cceeeCCceEEEEEEEEeCCCCcEEEEEEeeeeccccc--cCeeEeeccccccCCeeecCCCceEEeEEeeeeCCceEeE
Q 036697           74 ARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFD--HSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTFDL  151 (253)
Q Consensus        74 ~~~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d--~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~l~p~~~~L  151 (253)
                      .+.++-||.-.+.|.+.|....++.-..|.+.+..|..  .-....|-....-. ..+.||+..++-.+|-.=..|.+.|
T Consensus         7 fG~iylGEtF~~~l~~~N~s~~~v~~v~ikvemqT~s~~~r~~L~~~~~~~~~~-~~L~p~~~l~~iv~~~lkE~G~h~L   85 (249)
T PF06159_consen    7 FGSIYLGETFSCYLSVNNDSNKPVRNVRIKVEMQTPSQSLRLPLSDNENSDSPV-ASLAPGESLDFIVSHELKELGNHTL   85 (249)
T ss_pred             cCCEeecCCEEEEEEeecCCCCceEEeEEEEEEeCCCCCccccCCCCccccccc-cccCCCCeEeEEEEEEeeecCceEE
Confidence            36889999999999999999999999999999999976  21223332221111 3689999999988888888999999


Q ss_pred             EEEEEE-Ee---CCc
Q 036697          152 VGSIVY-EV---DQH  162 (253)
Q Consensus       152 ~i~l~y-d~---~g~  162 (253)
                      +..|.| +.   +|.
T Consensus        86 ~c~VsY~~~~~~~g~  100 (249)
T PF06159_consen   86 VCTVSYTDPTETSGE  100 (249)
T ss_pred             EEEEEEecCcccCCc
Confidence            999999 77   563

>PF14874 PapD-like: Flagellar-associated PapD-like

Probab=91.75  E-value=3.4  Score=31.40  Aligned_cols=83  Identities=11%  Similarity=0.095  Sum_probs=58.2

Q ss_pred             ceeeCCceEEEEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeee-eCCceEeEEE
Q 036697           75 RVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCC-QQPGTFDLVG  153 (253)
Q Consensus        75 ~~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~-l~p~~~~L~i  153 (253)
                      +.+.-|+....-+.++|.+..+.....-     .|...+   ..|+.. +....|.||++.++.-.|.| -..|+|.-.+
T Consensus        14 G~v~~g~~~~~~v~l~N~s~~p~~f~v~-----~~~~~~---~~~~v~-~~~g~l~PG~~~~~~V~~~~~~~~g~~~~~l   84 (102)
T PF14874_consen   14 GNVFVGQTYSRTVTLTNTSSIPARFRVR-----QPESLS---SFFSVE-PPSGFLAPGESVELEVTFSPTKPLGDYEGSL   84 (102)
T ss_pred             eEEccCCEEEEEEEEEECCCCCEEEEEE-----eCCcCC---CCEEEE-CCCCEECCCCEEEEEEEEEeCCCCceEEEEE
Confidence            7889999999999999999988665532     233221   123322 33368999999999999997 7888887766


Q ss_pred             EEEEEeCCceEEEee
Q 036697          154 SIVYEVDQHPYQSTF  168 (253)
Q Consensus       154 ~l~yd~~g~~y~~~~  168 (253)
                      .+.  .++..+.+++
T Consensus        85 ~i~--~e~~~~~i~v   97 (102)
T PF14874_consen   85 VIT--TEGGSFEIPV   97 (102)
T ss_pred             EEE--ECCeEEEEEE
Confidence            554  4444555543

>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D

Probab=91.44  E-value=0.73  Score=35.66  Aligned_cols=55  Identities=18%  Similarity=0.414  Sum_probs=32.0

Q ss_pred             cceeeCCceEEEEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeeeeCCceEeE
Q 036697           74 ARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTFDL  151 (253)
Q Consensus        74 ~~~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~l~p~~~~L  151 (253)
                      ...+++|++++  +.++|++..+-.+.               +.+   .... ..++||++.++.  |.|..||.|.+
T Consensus        36 ~i~v~~G~~v~--l~~~N~~~~~h~~~---------------i~~---~~~~-~~l~~g~~~~~~--f~~~~~G~y~~   90 (104)
T PF13473_consen   36 TITVKAGQPVT--LTFTNNDSRPHEFV---------------IPD---LGIS-KVLPPGETATVT--FTPLKPGEYEF   90 (104)
T ss_dssp             EEEEETTCEEE--EEEEE-SSS-EEEE---------------EGG---GTEE-EEE-TT-EEEEE--EEE-S-EEEEE
T ss_pred             EEEEcCCCeEE--EEEEECCCCcEEEE---------------ECC---CceE-EEECCCCEEEEE--EcCCCCEEEEE
Confidence            45899999988  45789987753332               222   2233 578999887655  56678888763

>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses

Probab=91.05  E-value=0.12  Score=35.37  Aligned_cols=29  Identities=24%  Similarity=0.457  Sum_probs=23.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhheeecccc
Q 036697          185 ESVFLVTLGIALLVLFGLWIHGQVKQLSK  213 (253)
Q Consensus       185 e~iFLyl~lla~~~~~gy~vy~~~~~~~k  213 (253)
                      .+||-.++++|+|+-+|..+|++..+.++
T Consensus         6 t~iFsvvIil~If~~iGl~IyQkikqIrg   34 (49)
T PF11044_consen    6 TTIFSVVIILGIFAWIGLSIYQKIKQIRG   34 (49)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46899999999999999999988765443

The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.

>COG1470 Predicted membrane protein [Function unknown]

Probab=89.91  E-value=5.6  Score=39.68  Aligned_cols=85  Identities=15%  Similarity=0.273  Sum_probs=66.9

Q ss_pred             ceeeCCceEEEEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeee---eCCceEeE
Q 036697           75 RVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCC---QQPGTFDL  151 (253)
Q Consensus        75 ~~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~---l~p~~~~L  151 (253)
                      ..+.+|+...+-+.+.|.|..++  .-|.=++..||+.+-.|+-.|-     ..++||+..+++-....   -.+|+|+.
T Consensus       391 lt~taGee~~i~i~I~NsGna~L--tdIkl~v~~PqgWei~Vd~~~I-----~sL~pge~~tV~ltI~vP~~a~aGdY~i  463 (513)
T COG1470         391 LTITAGEEKTIRISIENSGNAPL--TDIKLTVNGPQGWEIEVDESTI-----PSLEPGESKTVSLTITVPEDAGAGDYRI  463 (513)
T ss_pred             EEecCCccceEEEEEEecCCCcc--ceeeEEecCCccceEEECcccc-----cccCCCCcceEEEEEEcCCCCCCCcEEE
Confidence            36788999999999999996554  4555578889998888887754     47999999998888886   89999999


Q ss_pred             EEEEEEEe--CCceEEE
Q 036697          152 VGSIVYEV--DQHPYQS  166 (253)
Q Consensus       152 ~i~l~yd~--~g~~y~~  166 (253)
                      .+.+-=|.  .....++
T Consensus       464 ~i~~ksDq~s~e~tlrV  480 (513)
T COG1470         464 TITAKSDQASSEDTLRV  480 (513)
T ss_pred             EEEEeeccccccceEEE
Confidence            88887752  3445555

>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini

Probab=89.06  E-value=1.6  Score=29.13  Aligned_cols=44  Identities=11%  Similarity=0.307  Sum_probs=33.0

Q ss_pred             EEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEe
Q 036697           87 VGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHF  141 (253)
Q Consensus        87 vg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F  141 (253)
                      +.|+|.|++++.|..|..|=--      ..     ..+....|+||++..+...|
T Consensus         2 F~~~N~g~~~L~I~~v~tsCgC------t~-----~~~~~~~i~PGes~~i~v~y   45 (45)
T PF07610_consen    2 FEFTNTGDSPLVITDVQTSCGC------TT-----AEYSKKPIAPGESGKIKVTY   45 (45)
T ss_pred             EEEEECCCCcEEEEEeeEccCC------EE-----eeCCcceECCCCEEEEEEEC
Confidence            5789999999999988877532      22     23333679999999887665

>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function

Probab=88.55  E-value=5.1  Score=32.48  Aligned_cols=78  Identities=17%  Similarity=0.226  Sum_probs=53.1

Q ss_pred             EEEEccCCCc--------ceeeCCceEEEEEEEEeCCCCcEEEE-EEeeeecccc------------c--cCeeEeeccc
Q 036697           65 TVCIFPKNSA--------RVVAAGEETELLVGMKNDGESSVNVI-AIQASVHLPF------------D--HSLLVQNLTG  121 (253)
Q Consensus        65 t~~~Fp~~~~--------~~l~nG~~~~~lvg~~N~g~~~~~V~-~i~gSf~~P~------------d--~~~~vqNfTa  121 (253)
                      +...+|+++.        ..+..|+..++-+.++|+.+++++|. .+.-+.....            |  ..+-+.++..
T Consensus         3 V~p~~p~~Q~~~~~~YFdL~~~P~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~   82 (121)
T PF06030_consen    3 VTPVLPENQIDKNVSYFDLKVKPGQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVK   82 (121)
T ss_pred             EeecCCccccCCCCCeEEEEeCCCCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhcc
Confidence            4456676643        46899999999999999999999986 3333333221            1  1134444544


Q ss_pred             cccCCeeecCCCceEEeEEeee
Q 036697          122 QAFNNATVPVSAQATFPIHFCC  143 (253)
Q Consensus       122 ~~~~~~~V~pg~~atf~Y~F~~  143 (253)
                      ..-. .+|+|+++.++++....
T Consensus        83 ~~~~-Vtl~~~~sk~V~~~i~~  103 (121)
T PF06030_consen   83 IPKE-VTLPPNESKTVTFTIKM  103 (121)
T ss_pred             CCcE-EEECCCCEEEEEEEEEc
Confidence            4555 78999999999888764

>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=86.67  E-value=13  Score=28.94  Aligned_cols=86  Identities=16%  Similarity=0.166  Sum_probs=47.8

Q ss_pred             CceEEEEEEEEeCCCCcEEE--EEEeeeeccc----cccCeeEeec------cccccCCeeecCCCceEEeEEeee---e
Q 036697           80 GEETELLVGMKNDGESSVNV--IAIQASVHLP----FDHSLLVQNL------TGQAFNNATVPVSAQATFPIHFCC---Q  144 (253)
Q Consensus        80 G~~~~~lvg~~N~g~~~~~V--~~i~gSf~~P----~d~~~~vqNf------Ta~~~~~~~V~pg~~atf~Y~F~~---l  144 (253)
                      |...++-|.++|.|+++.+-  ... +.+..-    ..+....++.      +...-. .+|+||+++++...|.+   +
T Consensus         7 ~~~~~~~itl~N~~~~~~ty~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-vTV~ag~s~~v~vti~~p~~~   84 (112)
T PF06280_consen    7 GNKFSFTITLHNYGDKPVTYTLSHV-PVLTDKTDTEEGYSILVPPVPSISTVSFSPDT-VTVPAGQSKTVTVTITPPSGL   84 (112)
T ss_dssp             -SEEEEEEEEEE-SSS-EEEEEEEE--EEEEEE--ETTEEEEEEEE----EEE---EE-EEE-TTEEEEEEEEEE--GGG
T ss_pred             CCceEEEEEEEECCCCCEEEEEeeE-EEEeeEeeccCCcccccccccceeeEEeCCCe-EEECCCCEEEEEEEEEehhcC
Confidence            44589999999999988664  333 233221    1122222222      222233 68999999999999998   4


Q ss_pred             C-CceEeEEEEEEE-EeCCc-eEEEe
Q 036697          145 Q-PGTFDLVGSIVY-EVDQH-PYQST  167 (253)
Q Consensus       145 ~-p~~~~L~i~l~y-d~~g~-~y~~~  167 (253)
                      . ++..-...++.. ..++. .++++
T Consensus        85 ~~~~~~~~eG~I~~~~~~~~~~lsIP  110 (112)
T PF06280_consen   85 DASNGPFYEGFITFKSSDGEPDLSIP  110 (112)
T ss_dssp             HHTT-EEEEEEEEEESSTTSEEEEEE
T ss_pred             CcccCCEEEEEEEEEcCCCCEEEEee
Confidence            3 455566788888 45555 55554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.

>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []

Probab=86.37  E-value=4.3  Score=39.20  Aligned_cols=92  Identities=14%  Similarity=0.150  Sum_probs=56.2

Q ss_pred             eCCceEEEEEEEEeCCCCcEEEE-EEeeeeccccc--------c-CeeEe--eccccccCCeeecCCCceEEeEEeee--
Q 036697           78 AAGEETELLVGMKNDGESSVNVI-AIQASVHLPFD--------H-SLLVQ--NLTGQAFNNATVPVSAQATFPIHFCC--  143 (253)
Q Consensus        78 ~nG~~~~~lvg~~N~g~~~~~V~-~i~gSf~~P~d--------~-~~~vq--NfTa~~~~~~~V~pg~~atf~Y~F~~--  143 (253)
                      +.|+..++-+.++|+|++++.+. +..|.+|..+-        + +.++-  -|+...-  ..|.|||+.++.-.-.-  
T Consensus       260 vpgR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~--~pI~PGETrtl~V~a~dA~  337 (381)
T PF04744_consen  260 VPGRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDN--SPIAPGETRTLTVEAQDAA  337 (381)
T ss_dssp             SSSSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES----S-B-TT-EEEEEEEEE-HH
T ss_pred             cCCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCC--CCcCCCceEEEEEEeehhH
Confidence            67889999999999999999985 66776665431        1 11122  1333222  47999999999987753  


Q ss_pred             -----e----CCceEeEEEEEEE-EeCCceEEEeeecc
Q 036697          144 -----Q----QPGTFDLVGSIVY-EVDQHPYQSTFYNG  171 (253)
Q Consensus       144 -----l----~p~~~~L~i~l~y-d~~g~~y~~~~fN~  171 (253)
                           |    .--+-++-.-+++ |.+|+.|.+.+-..
T Consensus       338 WeveRL~~l~~D~dsrfgGLLff~d~~G~r~i~~I~gp  375 (381)
T PF04744_consen  338 WEVERLSDLIYDPDSRFGGLLFFFDASGNRYISEIAGP  375 (381)
T ss_dssp             HHHTTGGGGGGSSS-EEEEEEEEEETTS-EEEEEEEEE
T ss_pred             HHHhhhhhhhcCcccceeEEEEEEcCCCCEEEEeccCc
Confidence                 2    2235566666666 99999998877655

These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.

>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds

Probab=83.55  E-value=6.1  Score=30.54  Aligned_cols=73  Identities=14%  Similarity=0.139  Sum_probs=47.5

Q ss_pred             eeeCCceEEEEEEEEeCCCCc---EEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeeeeCCceEeEE
Q 036697           76 VVAAGEETELLVGMKNDGESS---VNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTFDLV  152 (253)
Q Consensus        76 ~l~nG~~~~~lvg~~N~g~~~---~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~l~p~~~~L~  152 (253)
                      ..+-|++.++.+.|+|..+.+   +++....-+..|+.-   ....+...... ..|+||++.++.-.+.|-+.|.-.+.
T Consensus        10 ~~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~---~~~~~~~~~~~-~~l~p~~~~~~~~~i~p~~yG~~~~l   85 (107)
T PF00927_consen   10 DPVVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGL---TRDQFKKEKFE-VTLKPGETKSVEVTITPSQYGPKQLL   85 (107)
T ss_dssp             EEBTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTT---EEEEEEEEEEE-EEE-TTEEEEEEEEE-HHSHEEECCE
T ss_pred             CccCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCc---ccccEeEEEcc-eeeCCCCEEEEEEEEEceeEecchhc
Confidence            678999999999999998766   444455555555533   22344444555 79999999999999999555443333

Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....

>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function

Probab=83.46  E-value=42  Score=33.03  Aligned_cols=94  Identities=17%  Similarity=0.253  Sum_probs=60.8

Q ss_pred             CCCeeEEEEccCCCcceeeCCceEEEEEEEEeCCCCcEEEEEEeeeec-------cccccCee---------Eeec-ccc
Q 036697           60 APGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVH-------LPFDHSLL---------VQNL-TGQ  122 (253)
Q Consensus        60 sP~v~t~~~Fp~~~~~~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~-------~P~d~~~~---------vqNf-Ta~  122 (253)
                      .|.+++.+  |. ......-||...+-+.+.|+++....+....-.++       .+.+....         -++. ...
T Consensus       172 pp~v~I~~--~~-~~~~~l~gE~~~i~i~I~n~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (554)
T PF07919_consen  172 PPKVSIKL--PN-HKPPALTGEFYPIPITISNNEDEEASGVLEVRLLHPSQLGVSSEETEDLSQVNWDSDKDDEPLFLGI  248 (554)
T ss_pred             CCCeEEEe--CC-CCCCeEcCCEEEEEEEEEcCCCccceeEEEEEEecccccccccccCccceecccccccccchhccCc
Confidence            45555444  11 12356889999999999999998877665555551       01111010         0111 111


Q ss_pred             ccCCeeecCCCceEEeEEeeeeCCceEeEEEEEEEE
Q 036697          123 AFNNATVPVSAQATFPIHFCCQQPGTFDLVGSIVYE  158 (253)
Q Consensus       123 ~~~~~~V~pg~~atf~Y~F~~l~p~~~~L~i~l~yd  158 (253)
                      ..+  .+.+|++.+..+.+....++++.|.+.+.|.
T Consensus       249 ~lg--~l~~~~s~~~~l~i~~~~~~~~~L~i~~~Y~  282 (554)
T PF07919_consen  249 PLG--ELAPGSSITVTLYIRTSRPGEYELSISVSYH  282 (554)
T ss_pred             ccc--cCCCCCcEEEEEEEEeCCceeEEEEEEEEEE
Confidence            222  5789999988888888999999999999994

The region in question is approximately 150 residues long.

>KOG3317 consensus Translocon-associated complex TRAP, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.30  E-value=31  Score=30.21  Aligned_cols=126  Identities=13%  Similarity=0.157  Sum_probs=78.1

Q ss_pred             eCCceEEEEEEEEeCCCCc-EEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeeeeCCceEeEE-EEE
Q 036697           78 AAGEETELLVGMKNDGESS-VNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTFDLV-GSI  155 (253)
Q Consensus        78 ~nG~~~~~lvg~~N~g~~~-~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~l~p~~~~L~-i~l  155 (253)
                      +.++.+.+-+++-|-|.++ .-|+.=+-|| .+.+| .++.-.+...+.  .||+|...+=+-...|..+|-|.-. ..+
T Consensus        39 v~~rd~~leY~IyNvGsspAldVtLsD~Sf-pt~~F-eIvkG~~~~swe--rIpags~vsHsivl~prv~g~f~~t~atV  114 (188)
T KOG3317|consen   39 VEARDVSLEYDIYNVGSSPALDVTLSDNSF-PTKTF-EIVKGNLSVSWE--RIPAGSNVSHSIVLRPRVKGVFNGTPATV  114 (188)
T ss_pred             ccceeeEEEEeeEEcCCCcceeEEecCCCC-Cccce-eeecccccccee--ecCCCCceEEEEEEeecccceeccCceEE
Confidence            6788899999999999866 5566666665 44667 455555566776  6999988877666666455544322 456


Q ss_pred             EE-E-eCCceEEEee-----ecceEEEEeCCCCcChhHHHHHHHHHHHHHHHHHHhhhee
Q 036697          156 VY-E-VDQHPYQSTF-----YNGTIEVVESGGFISIESVFLVTLGIALLVLFGLWIHGQV  208 (253)
Q Consensus       156 ~y-d-~~g~~y~~~~-----fN~TVtVvE~~s~fD~e~iFLyl~lla~~~~~gy~vy~~~  208 (253)
                      .| + .+| ..+++-     -..+----|++--|||..+--|.|++-.+-.++..++.-|
T Consensus       115 ty~~~e~g-~~~~~~ts~~~~gyila~re~~rr~~~~~l~flgfgviv~p~t~ip~lL~~  173 (188)
T KOG3317|consen  115 TYRIPEKG-ALQEAYTSPPGPGYILAQREPDRRFDPRLLAFLGFGVIVIPMTVIPILLVA  173 (188)
T ss_pred             EEEcCCCC-ceeEEeecCCCCcceeeecCcccccChhHHHHHhhhhhhhhhhheeeeEEE
Confidence            66 3 344 333322     1122223355569999877666666555555554444444

>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised

Probab=80.66  E-value=12  Score=30.54  Aligned_cols=74  Identities=11%  Similarity=0.112  Sum_probs=55.8

Q ss_pred             CCceEEEEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccC------CeeecCCCceEEeEEeee--eCCceEe
Q 036697           79 AGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFN------NATVPVSAQATFPIHFCC--QQPGTFD  150 (253)
Q Consensus        79 nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~------~~~V~pg~~atf~Y~F~~--l~p~~~~  150 (253)
                      .+....+-..+.|..+.+..+-.|..+|++.++....=+.++...|-      ...++||++.+|.-.|.-  -....|+
T Consensus        66 ~~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~~~p~~~a~~~~  145 (149)
T PF11906_consen   66 GPGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRLEDPPPRAAGYR  145 (149)
T ss_pred             CCCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEeeCCCCccceEE
Confidence            45556777789999999999999999999998865566777664441      257999999988888774  4555665


Q ss_pred             EE
Q 036697          151 LV  152 (253)
Q Consensus       151 L~  152 (253)
                      +.
T Consensus       146 v~  147 (149)
T PF11906_consen  146 VE  147 (149)
T ss_pred             EE
Confidence            54

This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	253
3isy_A	120	Bsupi, intracellular proteinase inhibitor; intrace	96.03
3idu_A	127	Uncharacterized protein; all beta-protein, structu	95.52
2qsv_A	220	Uncharacterized protein; MCSG, structural genomics	94.04
2ys4_A	122	Hydrocephalus-inducing protein homolog; hydin, PAP	93.96
2qsv_A	220	Uncharacterized protein; MCSG, structural genomics	93.79
2e6j_A	112	Hydin protein; PAPD, structural genomics, NPPSFA,	92.85
2l0d_A	114	Cell surface protein; structural genomics, northea	91.56
1yew_A	382	Particulate methane monooxygenase, B subunit; memb	89.5
3rfr_A	419	PMOB; membrane, oxidoreductase; 2.68A {Methylocyst	87.98
2r5o_A	188	Putative ATP binding component of ABC- transporter	84.46
2xzz_A	102	Protein-glutamine gamma-glutamyltransferase K; 2.3	83.25

>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}

Probab=96.03  E-value=0.042  Score=43.73  Aligned_cols=77  Identities=18%  Similarity=0.284  Sum_probs=57.1

Q ss_pred             CCceEEEEEEEEeCCCCcEEEEEEeeeeccccccCeeEee--------------ccccccCCeeecCCCceEEeEEeee-
Q 036697           79 AGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQN--------------LTGQAFNNATVPVSAQATFPIHFCC-  143 (253)
Q Consensus        79 nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqN--------------fTa~~~~~~~V~pg~~atf~Y~F~~-  143 (253)
                      .|+..++.+.++|.++.++++.+=.|..     |++.|.+              ||.. +....++||++.+|.-.+.. 
T Consensus        16 ~g~~v~~~ltv~N~s~~~v~l~f~Sgq~-----~Df~v~d~~G~~VwrwS~~~~FtQa-~~~~tl~pGE~~~f~~~w~~~   89 (120)
T 3isy_A           16 EPEQIKFNMSLKNQSERAIEFQFSTGQK-----FELVVYDSEHKERYRYSKEKMFTQA-FQNLTLESGETYDFSDVWKEV   89 (120)
T ss_dssp             CSSCEEEEEEEEECSSSCEEEEESSSCC-----EEEEEECTTCCEEEETTTTCCCCCC-CEEEEECTTCEEEEEEEESSC
T ss_pred             CCCeEEEEEEEEcCCCCcEEEEeCCCCE-----EEEEEECCCCCEEEEccccchhhhh-hceEEECCCCEEEEEEEeCCC
Confidence            6778999999999999999988655543     2223322              3332 22378999999999999997 


Q ss_pred             eCCceEeEEEEEEEEeCC
Q 036697          144 QQPGTFDLVGSIVYEVDQ  161 (253)
Q Consensus       144 l~p~~~~L~i~l~yd~~g  161 (253)
                      ..||.|.|..++.=.+++
T Consensus        90 ~~pG~Ytl~a~l~~~~~~  107 (120)
T 3isy_A           90 PEPGTYEVKVTFKGRAEN  107 (120)
T ss_dssp             CCSEEEEEEEEECCEETT
T ss_pred             CCCccEEEEEEEEeeecc
Confidence            999999999776654443

>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A

Probab=95.52  E-value=0.13  Score=41.11  Aligned_cols=82  Identities=18%  Similarity=0.214  Sum_probs=60.1

Q ss_pred             CCCCCCeeEEEEccCCCcceeeCCceEEEEEEEEeCCCCc---EEEE-EEeeeeccccccCeeEeeccccccCCeeecCC
Q 036697           57 LSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESS---VNVI-AIQASVHLPFDHSLLVQNLTGQAFNNATVPVS  132 (253)
Q Consensus        57 ~~~sP~v~t~~~Fp~~~~~~l~nG~~~~~lvg~~N~g~~~---~~V~-~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg  132 (253)
                      +.+-||..+.+.=|.    .+..|+.+++-+.++|.|..+   ++|. .+.|.         .+..-     . ..+.||
T Consensus        13 ~~~~pDL~V~is~P~----~v~~G~~~ti~vtV~N~G~~~a~~~~V~lyvng~---------~v~t~-----~-v~La~G   73 (127)
T 3idu_A           13 TFEFPDLTVEIKGPD----VVGVNKLAEYEVHVKNLGGIGVPSTKVRVYINGT---------LYKNW-----T-VSLGPK   73 (127)
T ss_dssp             CCSSCCEEEEEESCS----EECTTCCEEEEEEEEECSSSCEEEEEEEEEETTE---------EEEEE-----E-EEECTT
T ss_pred             eccCCCeEEEecCCC----cccCCCEEEEEEEEEECCCCccCCcEEEEEECCE---------EEeeE-----E-eccCCC
Confidence            457899988665444    789999999999999999755   5555 23222         22221     2 358999


Q ss_pred             CceEEeEEeeeeCCceEeEEEEEEE
Q 036697          133 AQATFPIHFCCQQPGTFDLVGSIVY  157 (253)
Q Consensus       133 ~~atf~Y~F~~l~p~~~~L~i~l~y  157 (253)
                      ++.++.|.+.|..+|.|.|...+..
T Consensus        74 ~s~tv~f~~~~~~~G~~~v~AvVD~   98 (127)
T 3idu_A           74 EEKVLTFNWTPTQEGMYRINATVDE   98 (127)
T ss_dssp             CEEEEEEEECCSSCEEEEEEEEEST
T ss_pred             CeEEEEEEEEcCCCcEEEEEEEEcC
Confidence            9999999999877999987766555

>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}

Probab=94.04  E-value=0.45  Score=40.55  Aligned_cols=72  Identities=14%  Similarity=0.152  Sum_probs=55.6

Q ss_pred             ceeeCCceEEEEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeee--e-CCceEeE
Q 036697           75 RVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCC--Q-QPGTFDL  151 (253)
Q Consensus        75 ~~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~--l-~p~~~~L  151 (253)
                      ..+..|+.....+.++|.|+.|+++..+.    .|..       +++... +..|+||++..+...|.+  + .+|.+.=
T Consensus        13 g~v~~g~~~~~~~~i~N~g~~pl~i~~~~----~p~~-------~~~~~~-~~~I~PG~~g~I~vt~~~~~~~~~G~~~~   80 (220)
T 2qsv_A           13 PISMPEDEGVVRLVVNNTDESDLQVAVVS----LPSF-------VSLDDR-AFRLQAREPRELNLSLAVPRNMPPGMKDE   80 (220)
T ss_dssp             CSBCTTCCCEEEEEEEECSSSCEEEEEEE----CCTT-------EECSCC-EEEECSSSCEEEEEEECCCTTCCSEEEEE
T ss_pred             ccccCCCcceEEEEEEeCCCCceEEEecc----CCCc-------eEeeeC-cceeCCCCceEEEEEEcchhcccCCceee
Confidence            67899999999999999999999999763    2332       222222 378999999999999998  3 4677776


Q ss_pred             EEEEEEE
Q 036697          152 VGSIVYE  158 (253)
Q Consensus       152 ~i~l~yd  158 (253)
                      .+.+..+
T Consensus        81 ~i~v~~~   87 (220)
T 2qsv_A           81 PLVLEVT   87 (220)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            6777774

>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.96  E-value=0.18  Score=39.03  Aligned_cols=84  Identities=12%  Similarity=0.131  Sum_probs=62.6

Q ss_pred             ceeeCCceEEEEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeeeeCCceEeEEEE
Q 036697           75 RVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTFDLVGS  154 (253)
Q Consensus        75 ~~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~l~p~~~~L~i~  154 (253)
                      ...+-|+..+..+.++|.|+.+....     +..+       ..|+..+-. ..++||++.++.-+|.|...+.|.-.+.
T Consensus        35 g~~~v~~~~~~~~~l~N~g~~~~~f~-----~~~~-------~~F~i~P~~-g~L~pg~~~~i~V~F~P~~~g~~~~~l~  101 (122)
T 2ys4_A           35 STCPVKYSTQKILLVRNIGNKNAVFH-----IKTC-------RPFSIEPAI-GTLNVGESMQLEVEFEPQSVGDHSGRLI  101 (122)
T ss_dssp             CSEESSSCEEEEEEEECCSSSCEEEE-----EECC-------TTEEEESSE-EEECTTCEEEEEEEECCSSSBCCCCBCE
T ss_pred             CCeecCCeEEEEEEEEECCCCCEEEE-----EecC-------CCeEEECCc-CEECCCCEEEEEEEEEcCCCccEEEEEE
Confidence            67899999999999999999877653     2222       234444444 6899999999999999988888887777


Q ss_pred             EEEEeCCceEEEeeecce
Q 036697          155 IVYEVDQHPYQSTFYNGT  172 (253)
Q Consensus       155 l~yd~~g~~y~~~~fN~T  172 (253)
                      +.|+ +|..+.+.+...-
T Consensus       102 v~~~-~g~~~~v~L~G~~  118 (122)
T 2ys4_A          102 VCYD-TGEKVFVSLYGAA  118 (122)
T ss_dssp             EEES-SSCEECCEECCCE
T ss_pred             EEEC-CCCEEEEEEEEEE
Confidence            7773 3456666665443

>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}

Probab=93.79  E-value=0.24  Score=42.27  Aligned_cols=74  Identities=12%  Similarity=0.115  Sum_probs=58.4

Q ss_pred             cceeeCCceEEEEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeee-eCCce----
Q 036697           74 ARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCC-QQPGT----  148 (253)
Q Consensus        74 ~~~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~-l~p~~----  148 (253)
                      ...+. |+..+..+.|+|.|+.++.+..+..|=      ....-+     +....|+||++.++...|.+ -.+|.    
T Consensus       128 fG~i~-g~~~~~~f~i~N~G~~pL~I~~v~~sc------gct~~~-----~~~~~i~PGe~~~i~v~~~~~~~~g~~~~~  195 (220)
T 2qsv_A          128 MGQLD-GETTKAAIEIRNVGAGPLRLHSVTTRN------PALTAV-----PDRTEIKPGGSTLLRIAVDPQVMKAEGWQS  195 (220)
T ss_dssp             EEECT-TSCEEEEEEEEECSSSCEEEEEEEECS------TTEEEE-----ESCSEECTTCEEEEEEEECHHHHHHTTCSE
T ss_pred             eeccC-CCeEEEEEEEEECCCCCEEEEEEEeCC------CCEeee-----cCCccCCCCCEEEEEEEEecCCCCCcccce
Confidence            47788 999999999999999999999887642      233333     33368999999999999999 44577    


Q ss_pred             EeEEEEEEEEe
Q 036697          149 FDLVGSIVYEV  159 (253)
Q Consensus       149 ~~L~i~l~yd~  159 (253)
                      +.-.+.++-+.
T Consensus       196 ~~~~i~v~~N~  206 (220)
T 2qsv_A          196 IAADISIICND  206 (220)
T ss_dssp             EEEEEEEEESC
T ss_pred             eccEEEEEECC
Confidence            88888887743

>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.85  E-value=0.69  Score=34.55  Aligned_cols=82  Identities=13%  Similarity=0.047  Sum_probs=59.8

Q ss_pred             cceeeCCceEEEEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeeeeCCceEeEEE
Q 036697           74 ARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTFDLVG  153 (253)
Q Consensus        74 ~~~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~l~p~~~~L~i  153 (253)
                      ...+.-|++.+..+.++|.|+.+.....+..+     .  ..-..|+...-. ..|+||++.++.-.|.|-++|.|.-.+
T Consensus        19 FG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~-----~--~~~~~f~v~p~~-g~i~pg~~~~i~V~f~~~~~g~f~~~i   90 (112)
T 2e6j_A           19 IGKVFTGSAHCYEAILYNKGSIDALFNMTPPT-----S--ALGACFVFSPKE-GIIEPSGVQAIQISFSSIILGNFEEEF   90 (112)
T ss_dssp             EEEEESSCCEEEEEEEEECCSSCEEEEECCCS-----S--HHHHHCEEESSE-EEECTTBCCEEEEEECCCCCEEEEEEE
T ss_pred             cEeEEECCEEEEEEEEEECCcceEEEEEecCC-----c--cccCcEEEECCc-CEECCCCEEEEEEEEECCCcceEEEEE
Confidence            37889999999999999999999888764311     1  001124443333 789999999999999996678898887


Q ss_pred             EEEEEeCCce
Q 036697          154 SIVYEVDQHP  163 (253)
Q Consensus       154 ~l~yd~~g~~  163 (253)
                      .+..+.....
T Consensus        91 ~v~~~g~~~~  100 (112)
T 2e6j_A           91 LVNVNGSPEP  100 (112)
T ss_dssp             CEEESSCSSC
T ss_pred             EEEECCCCce
Confidence            7777543333

>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}

Probab=91.56  E-value=2.5  Score=32.96  Aligned_cols=80  Identities=15%  Similarity=0.292  Sum_probs=57.2

Q ss_pred             CCCeeEEEEccCCCcceeeCCceEEEEEEEEeCCC---CcEEEEE-EeeeeccccccCeeEeeccccccCCeeecCCCce
Q 036697           60 APGVDTVCIFPKNSARVVAAGEETELLVGMKNDGE---SSVNVIA-IQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQA  135 (253)
Q Consensus        60 sP~v~t~~~Fp~~~~~~l~nG~~~~~lvg~~N~g~---~~~~V~~-i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~a  135 (253)
                      .||..++.+=|.    ....|+.+.+-+.++|.|.   ..++|.. +.|.         .+..-   ..  ..+.+|.+.
T Consensus         2 ~PDL~vt~itP~----~~~~~~~~ti~atVkN~G~~~a~~~~V~ly~~g~---------~v~t~---~v--~~LaaG~s~   63 (114)
T 2l0d_A            2 IPDLVPVSLTPV----TVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGI---------VVDTQ---TV--TSLESENST   63 (114)
T ss_dssp             CCCEEEEEEECS----EECTTSEEEEEEEEEECSSSCBCCEEEEEEETTE---------EEEEE---EE--SCBCBTCEE
T ss_pred             CCCcEEEeccCC----CcCCCCeEEEEEEEEECCCCCCCCEEEEEEECCE---------EEcce---ec--ccccCCCEE
Confidence            588877766333    4789999999999999997   4577763 3332         11111   12  147899999


Q ss_pred             EEeEEeeee-CCceEeEEEEEEE
Q 036697          136 TFPIHFCCQ-QPGTFDLVGSIVY  157 (253)
Q Consensus       136 tf~Y~F~~l-~p~~~~L~i~l~y  157 (253)
                      ++.|.+.|- .+|.|.|...+.-
T Consensus        64 tv~~~w~~~~~~G~ytl~a~VD~   86 (114)
T 2l0d_A           64 NVDFHWTLDGTANSYTLTVNVDP   86 (114)
T ss_dssp             EEEEEEECCCSCSEEEEEEEECT
T ss_pred             EEEEEEeecCcCceEEEEEEECC
Confidence            999999985 6999998865544

>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A

Probab=89.50  E-value=2.8  Score=39.20  Aligned_cols=95  Identities=12%  Similarity=0.098  Sum_probs=62.2

Q ss_pred             eCCceEEEEEEEEeCCCCcEEEE-EEeeeecccc--------ccCeeEeecccccc-CCeeecCCCceEEeEEeee----
Q 036697           78 AAGEETELLVGMKNDGESSVNVI-AIQASVHLPF--------DHSLLVQNLTGQAF-NNATVPVSAQATFPIHFCC----  143 (253)
Q Consensus        78 ~nG~~~~~lvg~~N~g~~~~~V~-~i~gSf~~P~--------d~~~~vqNfTa~~~-~~~~V~pg~~atf~Y~F~~----  143 (253)
                      +.|+..++-+.++|+|++++.+- +-.|.+|..+        ++...+-|-..... ++..|.|||+.++.-+-.-    
T Consensus       261 vpgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~pI~PGETr~~~v~a~da~We  340 (382)
T 1yew_A          261 VPGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSPLAPGETRTVDVTASDAAWE  340 (382)
T ss_dssp             SSCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCSCBCTTCEEEEEEEEECHHHH
T ss_pred             cCCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCCCcCCCceeEEEEEeehHHHH
Confidence            67899999999999999999995 7778755432        12212222212222 2246999999999866553    


Q ss_pred             ---e----CCceEeEEEEEEE-EeCCceEEEeeecce
Q 036697          144 ---Q----QPGTFDLVGSIVY-EVDQHPYQSTFYNGT  172 (253)
Q Consensus       144 ---l----~p~~~~L~i~l~y-d~~g~~y~~~~fN~T  172 (253)
                         |    .--+-++-.-+++ |.+|+.|.+.+-...
T Consensus       341 veRL~~l~~D~dSrfgGLLfF~d~~G~r~~~~I~~pv  377 (382)
T 1yew_A          341 VYRLSDIIYDPDSRFAGLLFFFDATGNRQVVQIDAPL  377 (382)
T ss_dssp             HTCGGGGGGSSCCEEEEEEEEEETTSCEEEEEEEEEC
T ss_pred             HHHhhhhhcCcccceeEEEEEEcCCCCEEEEeccCcc
Confidence               2    2224445555665 999999988766543

>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A

Probab=87.98  E-value=2.7  Score=39.64  Aligned_cols=93  Identities=14%  Similarity=0.182  Sum_probs=64.3

Q ss_pred             eCCceEEEEEEEEeCCCCcEEEE-EEeeeecccc--------cc-CeeEee--ccccccCCeeecCCCceEEeEEeee--
Q 036697           78 AAGEETELLVGMKNDGESSVNVI-AIQASVHLPF--------DH-SLLVQN--LTGQAFNNATVPVSAQATFPIHFCC--  143 (253)
Q Consensus        78 ~nG~~~~~lvg~~N~g~~~~~V~-~i~gSf~~P~--------d~-~~~vqN--fTa~~~~~~~V~pg~~atf~Y~F~~--  143 (253)
                      +.|+..++-+.++|+|++++.+. +-.|.+|..+        ++ +..+-|  ++   -++ .|.|||+.++.-.-.-  
T Consensus       295 vpgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~---s~~-pI~PGETrt~~V~a~da~  370 (419)
T 3rfr_A          295 VPGRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLS---NDD-VIAPGESKEIVVKIQDAR  370 (419)
T ss_dssp             SSSSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCC---CCC-CBCTTCEEEEEEEEECHH
T ss_pred             cCCcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCC---CCC-CcCCCcceEEEEEeehHH
Confidence            67888999999999999999984 6666655432        11 334434  44   333 7999999999866553  


Q ss_pred             -----e----CCceEeEEEEEEE-EeCCceEEEeeecceEE
Q 036697          144 -----Q----QPGTFDLVGSIVY-EVDQHPYQSTFYNGTIE  174 (253)
Q Consensus       144 -----l----~p~~~~L~i~l~y-d~~g~~y~~~~fN~TVt  174 (253)
                           |    .--+-++-.-+++ |.+|+.|.+.+-...|-
T Consensus       371 WeveRL~~l~~D~dSrfgGLLfF~d~~G~r~i~~I~~pvIP  411 (419)
T 3rfr_A          371 WDIERLSDLAYDTDSQVGGLLFFFTPDGKRFAAEIGGPVIP  411 (419)
T ss_dssp             HHHTTGGGGGGSSSCEEEEEEEEECSSSCEEEEEEEEECEE
T ss_pred             HHHHHHhhhhcCchhheeEEEEEEcCCCCEEEEeccCcccc
Confidence                 1    2234455656666 99999998887665443

>2r5o_A Putative ATP binding component of ABC- transporter; immunoglobulin fold, carbohydrate binding, domain swapping, O antigen export; HET: PG4; 1.30A {Escherichia coli}

Probab=84.46  E-value=15  Score=29.99  Aligned_cols=96  Identities=10%  Similarity=0.037  Sum_probs=61.0

Q ss_pred             CCCeeE-EEEccCCC---cceeeCCceEEEEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCC-ee-ecCCC
Q 036697           60 APGVDT-VCIFPKNS---ARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNN-AT-VPVSA  133 (253)
Q Consensus        60 sP~v~t-~~~Fp~~~---~~~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~-~~-V~pg~  133 (253)
                      +..+.+ .+.+-+..   ...+..|++.++-+.++-+.+  +.--.++=.++.......+--|-....... .. +.+|+
T Consensus        45 sg~a~I~~v~l~d~~G~~~~~~~~Ge~v~l~i~~~~~~~--i~~~v~G~~Ik~~~G~~I~g~nT~~~~~~~~~~~~~~G~  122 (188)
T 2r5o_A           45 QGGAKIIDYHIQSAGVDFPPSLTGNQQTDFLMKVVFEYD--FDCVVPGILIKTLDGLFLYGTNSFLASEGRENISVSRGD  122 (188)
T ss_dssp             CCSEEEEEEEEEETTEESCSSEETTCEEEEEEEEEESSC--EEEEEEEEEEEETTCCEEEEEEHHHHTTTCCCEEECTTC
T ss_pred             CCcEEEEEEEEEECCCCEeeEEeCCCEEEEEEEEEECCc--CCccEEEEEEECCCCCEEEecCcccccccccccccCCCC
Confidence            445543 33343332   257899999999999998754  322233335665554434444432222221 23 68899


Q ss_pred             ceEEeEEeee-eCCceEeEEEEEEE
Q 036697          134 QATFPIHFCC-QQPGTFDLVGSIVY  157 (253)
Q Consensus       134 ~atf~Y~F~~-l~p~~~~L~i~l~y  157 (253)
                      ..++.+.|.. |.||.|.|.+.+.-
T Consensus       123 ~~~v~f~f~l~L~~G~Y~lsv~i~~  147 (188)
T 2r5o_A          123 VRVFKFSLPVDLNSGDYLLSFGISA  147 (188)
T ss_dssp             EEEEEEEEECCBCSEEEEEEEEEEE
T ss_pred             EEEEEEEEecccCCCeEEEEEEEec
Confidence            8888888888 99999999998865

>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}

Probab=83.25  E-value=3.2  Score=31.61  Aligned_cols=70  Identities=20%  Similarity=0.232  Sum_probs=52.2

Q ss_pred             eeCCceEEEEEEEEeCCCCcEE--EEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeeeeCCceEeEEEE
Q 036697           77 VAAGEETELLVGMKNDGESSVN--VIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTFDLVGS  154 (253)
Q Consensus        77 l~nG~~~~~lvg~~N~g~~~~~--V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~l~p~~~~L~i~  154 (253)
                      -.-|++..+-|.|+|.=+.+++  +..++|+=        +.+-. ...++  .|+||+++++...|+|..+|.-.|...
T Consensus        16 ~~v~~~l~v~vsf~NPL~~~L~~c~~~vEG~G--------L~~~~-~~~~~--~v~pg~~~~~~~~~~P~~~G~~~L~a~   84 (102)
T 2xzz_A           16 AVVGQECEVQIVFKNPLPVTLTNVVFRLEGSG--------LQRPK-ILNVG--DIGGNETVTLRQSFVPVRPGPRQLIAS   84 (102)
T ss_dssp             CCSSSCEEEEEEEECCSSSCBCSEEEEEEETT--------TEEEE-EEEEC--CBCTTCEEEEEEEECCCSCSSCCCEEE
T ss_pred             cccCCeEEEEEEEECCCCCcccCEEEEEECCC--------CCcce-EEEcC--cCCCCCEEEEEEEEecCcccceEEEEE
Confidence            3669999999999999887766  45667752        22221 22454  699999999999999988887777766


Q ss_pred             EEE
Q 036697          155 IVY  157 (253)
Q Consensus       155 l~y  157 (253)
                      +..
T Consensus        85 f~s   87 (102)
T 2xzz_A           85 LDS   87 (102)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	253
d1w8oa1	103	Sialidase, "linker" domain {Micromonospora viridif	96.82
d2q3za3	98	Transglutaminase, two C-terminal domains {Human (H	93.84
d1g0da3	101	Transglutaminase, two C-terminal domains {Red sea	93.4
d1vjja3	99	Transglutaminase, two C-terminal domains {Human (H	92.9
d1ex0a3	100	Transglutaminase, two C-terminal domains {Human (H	92.76
d1ex0a2	112	Transglutaminase, two C-terminal domains {Human (H	90.45
d1vjja2	115	Transglutaminase, two C-terminal domains {Human (H	89.29
d2dmba1	111	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	85.3
d2d7ma1	102	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	85.2
d1qfha1	104	F-actin cross-linking gelation factor (ABP-120) re	82.05

>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Sialidase, "linker" domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=96.82  E-value=0.0029  Score=46.98  Aligned_cols=83  Identities=13%  Similarity=0.179  Sum_probs=60.8

Q ss_pred             ceeeCCceEEEEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeee---eCCceEeE
Q 036697           75 RVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCC---QQPGTFDL  151 (253)
Q Consensus        75 ~~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~---l~p~~~~L  151 (253)
                      ..+..|+.+++-+.++|.|..+..-..+  ++.-|...+.  . .+.     ..|+||++.++.....+   -.+|+|.+
T Consensus        11 ~~v~pG~~~~~~vtVtN~g~~~~~~~~~--~~~~P~GW~v--~-~~~-----~~L~pG~s~~~~~~Vt~p~~a~~G~Y~i   80 (103)
T d1w8oa1          11 VALEPGQQVTVPVAVTNQSGIAVPKPSL--QLDASPDWQV--Q-GSV-----EPLMPGRQAKGQVTITVPAGTTPGRYRV   80 (103)
T ss_dssp             EEECTTCEEEEEEEEECCSSSCBSSCEE--EEECCTTSEE--E-EEE-----CCBCTTCEEEEEEEEECCTTCCCEEEEE
T ss_pred             eeeCCCCeEEEEEEEEeCCCCceeeeeE--EEcCCCCccc--c-Ccc-----eeeCCCCcEEEEEEEECCCCCCCceEEE
Confidence            4688999999999999999877642222  3345887633  2 221     35899999999999998   89999999


Q ss_pred             EEEEEEE--eCCceEEEe
Q 036697          152 VGSIVYE--VDQHPYQST  167 (253)
Q Consensus       152 ~i~l~yd--~~g~~y~~~  167 (253)
                      .+.+.++  .....|+++
T Consensus        81 ~~~a~~~~~~~s~t~tvt   98 (103)
T d1w8oa1          81 GATLRTSAGNASTTFTVT   98 (103)
T ss_dssp             EEEEEETTEEEEEEEEEE
T ss_pred             EEEEEeCCcceEEEEEEE
Confidence            9999883  233344443

>d2q3za3 b.1.5.1 (A:586-683) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Human (Homo sapiens), tissue isozyme [TaxId: 9606]

Probab=93.84  E-value=0.21  Score=36.22  Aligned_cols=82  Identities=10%  Similarity=0.078  Sum_probs=60.1

Q ss_pred             CCCeeEEEEccCCCcceeeCCceEEEEEEEEeCCCCcEE--EEEEeee-eccccccCeeEeeccccccCCeeecCCCceE
Q 036697           60 APGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVN--VIAIQAS-VHLPFDHSLLVQNLTGQAFNNATVPVSAQAT  136 (253)
Q Consensus        60 sP~v~t~~~Fp~~~~~~l~nG~~~~~lvg~~N~g~~~~~--V~~i~gS-f~~P~d~~~~vqNfTa~~~~~~~V~pg~~at  136 (253)
                      +|++++.+  +.    +..-|++..+.|.|+|.=+.+++  +..++|+ +..++-   .+      .+. ..|+||++++
T Consensus         1 ~P~l~I~v--~g----~~~vg~~~~v~vsF~NPL~~~L~~c~~~vEG~GL~~~~~---~~------~~~-~~v~pg~~~~   64 (98)
T d2q3za3           1 NPEIKIRI--LG----EPKQKRKLVAEVSLQNPLPVALEGCTFTVEGAGLTEEQK---TV------EIP-DPVEAGEEVK   64 (98)
T ss_dssp             CCCCEEEE--ES----CCSSSSCEEEEEEEECCSSSCBCSEEEEEECTTTCSSCE---EE------EEC-SCBCTTCEEE
T ss_pred             CCCeEEEE--CC----CcCcCCeEEEEEEEECCCCCchhCEEEEEEcCCcCcCcE---EE------eCC-CccCCCCEEE
Confidence            36666554  22    45789999999999999888875  6688887 433321   11      122 3699999999


Q ss_pred             EeEEeeeeCCceEeEEEEEEE
Q 036697          137 FPIHFCCQQPGTFDLVGSIVY  157 (253)
Q Consensus       137 f~Y~F~~l~p~~~~L~i~l~y  157 (253)
                      +...|.|..+|.-.|...+..
T Consensus        65 ~~~~~~P~~~G~~~L~a~f~s   85 (98)
T d2q3za3          65 VRMDLVPLHMGLHKLVVNFES   85 (98)
T ss_dssp             EEEEECCCSSSCEEEEEEEEC
T ss_pred             EEEEEEcCCcccEEEEEEEeC
Confidence            999999988888887766665

>d1g0da3 b.1.5.1 (A:584-684) Transglutaminase, two C-terminal domains {Red sea bream (Chrysophrys major) [TaxId: 143350]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Red sea bream (Chrysophrys major) [TaxId: 143350]

Probab=93.40  E-value=0.37  Score=35.05  Aligned_cols=72  Identities=15%  Similarity=0.142  Sum_probs=55.3

Q ss_pred             eeeCCceEEEEEEEEeCCCCcEE--EEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeeeeCCceEeEEE
Q 036697           76 VVAAGEETELLVGMKNDGESSVN--VIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTFDLVG  153 (253)
Q Consensus        76 ~l~nG~~~~~lvg~~N~g~~~~~--V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~l~p~~~~L~i  153 (253)
                      ...-|++..+.|.|+|.=+.+++  +..|+|+=        +.+-.+. .+. ..|+||+++++...|.|..+|.-.|..
T Consensus        11 ~~~v~~~~~v~vsf~NPL~~~L~~c~~~vEG~G--------L~~~~~~-~~~-~~v~p~~~~~~~~~~~P~~~G~~~L~a   80 (101)
T d1g0da3          11 KAVVWEPLTAYVSFTNPLPVPLKGGVFTLEGAG--------LLSATQI-HVN-GAVAPSGKVSVKLSFSPMRTGVRKLLV   80 (101)
T ss_dssp             CEETTCCEEEEEEEECCSSSCEESCEEEEEETT--------TEEEEEE-ECS-SEECTTCEEEEEEEECCSSCEEEEEEE
T ss_pred             CcCcCCeEEEEEEEECCCCCeecCEEEEEEcCC--------CCcccEE-Eec-CCcCCCCEEEEEEEEEcCCcccEEEEE
Confidence            46789999999999999888886  56777752        1222221 222 479999999999999999999988887


Q ss_pred             EEEE
Q 036697          154 SIVY  157 (253)
Q Consensus       154 ~l~y  157 (253)
                      .+..
T Consensus        81 ~f~s   84 (101)
T d1g0da3          81 DFDS   84 (101)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            7766

>d1vjja3 b.1.5.1 (A:594-692) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Human (Homo sapiens), TGase E3 [TaxId: 9606]

Probab=92.90  E-value=0.32  Score=35.30  Aligned_cols=72  Identities=13%  Similarity=0.135  Sum_probs=56.0

Q ss_pred             eeeCCceEEEEEEEEeCCCCcEE--EEEEeee-eccccccCeeEeeccccccCCeeecCCCceEEeEEeeeeCCceEeEE
Q 036697           76 VVAAGEETELLVGMKNDGESSVN--VIAIQAS-VHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTFDLV  152 (253)
Q Consensus        76 ~l~nG~~~~~lvg~~N~g~~~~~--V~~i~gS-f~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~l~p~~~~L~  152 (253)
                      +..-|++..+.+.|+|.=+.+++  +..|+|+ +..++-   .+      .+  ..|+||++++....|.|..+|.-.|.
T Consensus        10 ~~~v~~~~~v~vsf~NPL~~~L~~c~f~vEG~GL~~~~~---~~------~~--~~v~p~~~~~~~~~~~P~~~G~~~l~   78 (99)
T d1vjja3          10 EARVRKPVNVQMLFSNPLDEPVRDCVLMVEGSGLLLGNL---KI------DV--PTLGPKERSRVRFDILPSRSGTKQLL   78 (99)
T ss_dssp             CCBTTSCEEEEEEEECCSSSCBCSEEEEEECTTTSSSCE---EE------EE--CCBCTTCEEEEEEEECCCSCEEEEEE
T ss_pred             CcCcCCeEEEEEEEECCCCCchhCEEEEEEeCCCCCccE---EE------ec--CccCCCCEEEEEEEEEcCCcccEEEE
Confidence            45789999999999999888885  6688887 444321   11      23  36999999999999999889988888


Q ss_pred             EEEEEE
Q 036697          153 GSIVYE  158 (253)
Q Consensus       153 i~l~yd  158 (253)
                      ..+..+
T Consensus        79 a~f~s~   84 (99)
T d1vjja3          79 ADFSCN   84 (99)
T ss_dssp             EEEECS
T ss_pred             EEEECC
Confidence            776663

>d1ex0a3 b.1.5.1 (A:628-727) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Human (Homo sapiens), blood isozyme [TaxId: 9606]

Probab=92.76  E-value=0.53  Score=34.11  Aligned_cols=72  Identities=10%  Similarity=0.145  Sum_probs=55.3

Q ss_pred             eeeCCceEEEEEEEEeCCCCcEE--EEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeeeeCCceEeEEE
Q 036697           76 VVAAGEETELLVGMKNDGESSVN--VIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTFDLVG  153 (253)
Q Consensus        76 ~l~nG~~~~~lvg~~N~g~~~~~--V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~l~p~~~~L~i  153 (253)
                      +..-|++..+.+.|+|.=+.+++  +..|+|+=-        .+-. ...+  ..|+||+++++...|.|..+|.-.|..
T Consensus        12 ~~~v~~~~~v~v~F~NPL~~~L~nc~~~vEG~GL--------~~~~-~~~~--~~v~p~~~~~~~~~~~P~~~G~~~l~a   80 (100)
T d1ex0a3          12 TQVVGSDMTVTVQFTNPLKETLRNVWVHLDGPGV--------TRPM-KKMF--REIRPNSTVQWEEVCRPWVSGHRKLIA   80 (100)
T ss_dssp             CCBTTSCEEEEEEEECCSSSCEEEEEEEEEETTT--------EEEE-EEEE--EEECTTCEEEEEEEECCSSCEEEEEEE
T ss_pred             CcccCCeEEEEEEEECCCCCchhCEEEEEEcCCC--------ceee-EEec--CccCCCCEEEEEEEEecCCcccEEEEE
Confidence            55789999999999999888886  557777522        1211 1234  469999999999999999999988887


Q ss_pred             EEEEE
Q 036697          154 SIVYE  158 (253)
Q Consensus       154 ~l~yd  158 (253)
                      .+..+
T Consensus        81 ~f~s~   85 (100)
T d1ex0a3          81 SMSSD   85 (100)
T ss_dssp             EEECS
T ss_pred             EEECc
Confidence            76663

>d1ex0a2 b.1.5.1 (A:516-627) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Human (Homo sapiens), blood isozyme [TaxId: 9606]

Probab=90.45  E-value=2.2  Score=30.90  Aligned_cols=86  Identities=6%  Similarity=0.094  Sum_probs=59.0

Q ss_pred             eeeCCceEEEEEEEEeCCCCcEEEE-EEe-eeeccccccCeeEeeccccccCCeeecCCCceEEeEEeee------eCCc
Q 036697           76 VVAAGEETELLVGMKNDGESSVNVI-AIQ-ASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCC------QQPG  147 (253)
Q Consensus        76 ~l~nG~~~~~lvg~~N~g~~~~~V~-~i~-gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~------l~p~  147 (253)
                      ..+-|+...+.+.++|+.+++-+|. .+. -+..|-   +....++-..... ..++|+++.+++-...+      |..+
T Consensus        11 ~~~iG~df~v~i~~~N~s~~~~~v~l~l~a~~v~Yt---G~~~~~~~~~~~~-v~L~p~~~~~v~~~v~~~~Y~~~L~d~   86 (112)
T d1ex0a2          11 NAVLGKDFKLSITFRNNSHNRYTITAYLSANITFYT---GVPKAEFKKETFD-VTLEPLSFKKEAVLIQAGEYMGQLLEQ   86 (112)
T ss_dssp             CCBTTCCEEEEEEEEECSSSCEEEEEEEEEEEECTT---SCEEEEEEEEEEE-EEECTTEEEEEEEEECHHHHTTTCCTT
T ss_pred             CcccCCCEEEEEEEEECCCCCEEEEEEEEEEEEEeC---CcCchheEEeeEE-EEECCCCEEEEEEEEcHHHhhhhcccc
Confidence            4689999999999999999887765 333 334443   2456667677777 89999999999988887      3333


Q ss_pred             -eEeEEEEEEEEeCCceEE
Q 036697          148 -TFDLVGSIVYEVDQHPYQ  165 (253)
Q Consensus       148 -~~~L~i~l~yd~~g~~y~  165 (253)
                       .+++...+.+...++.|.
T Consensus        87 ~~i~~~~~a~v~et~~~~~  105 (112)
T d1ex0a2          87 ASLHFFVTARINETRDVLA  105 (112)
T ss_dssp             CEEEEEEEEEETTTCCEEE
T ss_pred             CeEEEEEEEEECCCCeEEE
Confidence             344444444444455443

>d1vjja2 b.1.5.1 (A:479-593) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Human (Homo sapiens), TGase E3 [TaxId: 9606]

Probab=89.29  E-value=2.9  Score=30.35  Aligned_cols=75  Identities=17%  Similarity=0.205  Sum_probs=55.8

Q ss_pred             CCeeEEEEccCCCcceeeCCceEEEEEEEEeCCCCcEEEE--EEeeeeccccccCeeEeeccccccCCeeecCCCceEEe
Q 036697           61 PGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVI--AIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFP  138 (253)
Q Consensus        61 P~v~t~~~Fp~~~~~~l~nG~~~~~lvg~~N~g~~~~~V~--~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~  138 (253)
                      ||+...+--.+    .+.-|+...+.+.++|+.+++-+|.  ...-+..|-.   ....++...... ..++|+++.+++
T Consensus         2 ~~v~~~lkl~~----~~~iG~Df~v~l~~~N~s~~~~~v~l~l~a~av~YtG---~~~~~~~~~~~~-v~L~p~~~~~v~   73 (115)
T d1vjja2           2 PSIIGKLKVAG----MLAVGKEVNLVLLLKNLSRDTKTVTVNMTAWTIIYNG---TLVHEVWKDSAT-MSLDPEEEAEHP   73 (115)
T ss_dssp             CSEEEEEEECS----CCBTTSCEEEEEEEEECSSSCEEEEEEEEEEEECTTC---CEEEEEEEEEEE-EEECTTCEEEEE
T ss_pred             CCeEEEEEcCC----CCCCCCCEEEEEEEEECCCCCEEEEEEEEEEEEEeCC---cCchheEEeeEE-EEECCCCeEEEE
Confidence            56666655544    5789999999999999999887765  3344444432   345666666776 899999999999


Q ss_pred             EEeee
Q 036697          139 IHFCC  143 (253)
Q Consensus       139 Y~F~~  143 (253)
                      -....
T Consensus        74 ~~v~y   78 (115)
T d1vjja2          74 IKISY   78 (115)
T ss_dssp             EEECH
T ss_pred             EEECH
Confidence            88887

>d2dmba1 b.1.18.10 (A:8-118) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.30  E-value=1  Score=32.52  Aligned_cols=84  Identities=21%  Similarity=0.393  Sum_probs=60.0

Q ss_pred             eeeCCceEEEEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeeeeCCceEeEEEEE
Q 036697           76 VVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTFDLVGSI  155 (253)
Q Consensus        76 ~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~l~p~~~~L~i~l  155 (253)
                      .+..|++++|.|.-++.|..++.|....     |....          +. ..|......++.-+|.|-.+|.|.+.+..
T Consensus        17 ~~~~g~~~~F~V~~~~ag~g~l~v~v~~-----p~g~~----------~~-~~v~d~~~G~y~v~f~P~~~G~h~i~V~~   80 (111)
T d2dmba1          17 TVKTGEEVGFVVDAKTAGKGKVTCTVLT-----PDGTE----------AE-ADVIENEDGTYDIFYTAAKPGTYVIYVRF   80 (111)
T ss_dssp             EEESSSEEEEEEECSSSCSCCEEEEEEC-----TTSCB----------CC-CEEEECTTSCEEEEEECSSCEEEEEEEEE
T ss_pred             CccCCCEEEEEEEeCCCCCCcEEEEEEE-----CCCCE----------EE-eEEEECCCCEEEEEEEECCCCCEEEEEEE
Confidence            5789999999999999998888876542     33211          11 23333444577888899889999888753


Q ss_pred             EE-EeCCceEEEeeecceEEE
Q 036697          156 VY-EVDQHPYQSTFYNGTIEV  175 (253)
Q Consensus       156 ~y-d~~g~~y~~~~fN~TVtV  175 (253)
                      .= ...|.+|.+.+++.....
T Consensus        81 ~g~~I~gSPf~v~V~~~~~~~  101 (111)
T d2dmba1          81 GGVDIPNSPFTVMATDGEVTA  101 (111)
T ss_dssp             SSCBCTTCSEEEEEECCSCCC
T ss_pred             CCEECCCCCEEEEEECCCcce
Confidence            33 469999999999887433

>d2d7ma1 b.1.18.10 (A:8-109) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.20  E-value=1.6  Score=30.86  Aligned_cols=78  Identities=14%  Similarity=0.220  Sum_probs=54.9

Q ss_pred             eeeCCceEEEEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeeeeCCceEeEEEEE
Q 036697           76 VVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTFDLVGSI  155 (253)
Q Consensus        76 ~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~l~p~~~~L~i~l  155 (253)
                      .++.|++++|.|.-++.|..+++|..     +.|....          .. ..|......++.-+|.|-.+|.|.+.+..
T Consensus        18 ~v~~g~~~~F~Vd~~~aG~g~l~v~i-----~~p~g~~----------~~-~~v~~~~dg~y~v~y~P~~~G~h~i~V~~   81 (102)
T d2d7ma1          18 GIPASLPVEFTIDARDAGEGLLTVQI-----LDPEGKP----------KK-ANIRDNGDGTYTVSYLPDMSGRYTITIKY   81 (102)
T ss_dssp             CEESSSCEEEEEEESSSCSSCEEEEE-----ECTTSCB----------CC-EEEEECSSSCEEEEECCCSCEEEEEEEEE
T ss_pred             CccCCCeEEEEEEeCCCCCCcEEEEE-----EeCCCCE----------ee-eEEEeCCCcEEEEEEEECCCEeEEEEEEE
Confidence            47899999999999999999887764     3443311          11 23444445688889999999999877542


Q ss_pred             EE-EeCCceEEEeee
Q 036697          156 VY-EVDQHPYQSTFY  169 (253)
Q Consensus       156 ~y-d~~g~~y~~~~f  169 (253)
                      .= ...|.+|.+.+.
T Consensus        82 ~g~~I~gSPF~v~V~   96 (102)
T d2d7ma1          82 GGDEIPYSPFRIHAL   96 (102)
T ss_dssp             SSCBCTTCSEEEEEE
T ss_pred             CCEECCCCCEEEEEE
Confidence            22 468999987654

>d1qfha1 b.1.18.10 (A:646-749) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: F-actin cross-linking gelation factor (ABP-120) repeats
species: Dictyostelium discoideum [TaxId: 44689]

Probab=82.05  E-value=2.4  Score=29.67  Aligned_cols=95  Identities=14%  Similarity=0.171  Sum_probs=57.1

Q ss_pred             CCCCCeeEEEEccCCCcceeeCCceEEEEEEEEeC-------CCCcEEEEEEeeeeccccccCeeEeeccccccCCeeec
Q 036697           58 SPAPGVDTVCIFPKNSARVVAAGEETELLVGMKND-------GESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVP  130 (253)
Q Consensus        58 ~~sP~v~t~~~Fp~~~~~~l~nG~~~~~lvg~~N~-------g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~  130 (253)
                      +|+|+++-+...=+. ......|++.+|.|.-.+.       |...+.|...     .|...          .+. ..|.
T Consensus         1 ~p~~~a~~~~a~G~G-l~~~~~g~~~~F~V~~~d~~G~~~~~Gg~~~~v~v~-----~p~g~----------~~~-~~v~   63 (104)
T d1qfha1           1 KPAPSAEHSYAEGEG-LVKVFDNAPAEFTIFAVDTKGVARTDGGDPFEVAIN-----GPDGL----------VVD-AKVT   63 (104)
T ss_dssp             CCCBCTTTCEEESGG-GTEEETTSCEEEEEECBBSSSCBCSSCCCCEEEEEE-----CGGGC----------EEC-CEEE
T ss_pred             CCCCCcCccEEECCC-cCcEeCCCcEEEEEEEecCCCCEeccCCceeEEEEE-----CCCCC----------EEe-eEEE
Confidence            355555544433221 2466889999999977655       3445555432     34331          111 2233


Q ss_pred             CCCceEEeEEeeeeCCceEeEEEEEEE-EeCCceEEEeee
Q 036697          131 VSAQATFPIHFCCQQPGTFDLVGSIVY-EVDQHPYQSTFY  169 (253)
Q Consensus       131 pg~~atf~Y~F~~l~p~~~~L~i~l~y-d~~g~~y~~~~f  169 (253)
                      .....++.-+|.|..+|.|.|.+.+.= ...|.+|.+.+.
T Consensus        64 d~~dGtY~v~y~p~~~G~~~i~V~~~g~~i~gSPf~v~V~  103 (104)
T d1qfha1          64 DNNDGTYGVVYDAPVEGNYNVNVTLRGNPIKNMPIDVKCI  103 (104)
T ss_dssp             ECSSSEEEEEECCCSSEEEEEEEEETTEECBTCSEEEEEE
T ss_pred             ECCCCEEEEEEEeCCCEeEEEEEEECCEECCCCCEEEEEE
Confidence            334457777788888899998766554 568999988764