Citrus Sinensis ID: 036720

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-
Protein Sequence
MGSGHWFRSIICLKKGKQDRSKQGKVQSATEKSNDSNESPSESSGNANANTNGGSDPHINPGFLRISVEERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCMVTEGRIKHKKLENQLKLEAKLHDLEVEWHNGSETMEEILSRIQQREEAAIKRERAMAYAFSHQWRANSSQYLGQAYYSICKDNWGWSWMERWIAARPWEVRVNAKPTKKIKGKQVSNADKFANQLELKVSVSATPNGNKTTKAKKSPPHSINLAVE
Secondary Structure (PSIPRED)
ccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MGSGHWFRSIICLkkgkqdrskqgkvqsateksndsnespsessgnanantnggsdphinpgflRISVEERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCMVTEGRIKHKKLENQLKLEAKLHDLEVEWHNGSETMEEILSRIQQREEAAIKRERAMAYAFSHqwranssqyLGQAYYSICKDNWGWSWMERWIAarpwevrvnakptkkikgkqvsnaDKFANQLELKVSvsatpngnkttkakkspphsinlave
Flexible Loop (DISEMBL)
mgsghwfrsiiclkkgkqdrskqgkvqsateksndsnespsessGNANANTNGGSDPHINPGFLRISVEERAATRIQKAfrayrarksirrlrgtgrfnilIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCMVTEGRIKHKKLENQLKLEAKLHDLEVEWHNGSETMEEILSRIQQREEAAIKRERAMAYAFSHQWRANSSQYLGQAYYSICKDNWGWSWMERWIAARpwevrvnakptkkikgkqvsnaDKFANQLELkvsvsatpngnkttkakkspphsinlave
Low Complexity Region (SEG)
MGSGHWFRSIICLKKGKQDRSKQGKVQSATEKsndsnespsessgnanantnggsDPHINPGFLRISVEERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCMVTEGRIKHKKLENQLKLEAKLHDLEVEWHNGSETMEEILSRIQQREEAAIKRERAMAYAFSHQWRANSSQYLGQAYYSICKDNWGWSWMERWIAARPWEVRVNAKPTKKIKGKQVSNADKFANQLELKVSVSATPNGNKTTKAKKSPPHSINLAVE
Disordered region (IsUnstruct)
****HWFRSIICL************************************************GFLRISVEERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCMVTEGRIKHKKLENQLKLEAKLHDLEVEWHNG******************IKRERAMAYAFSHQWRANSSQYLGQAYYSICKDNWGWSWMERWIAARPWEVRVNA****************************************************
Disordered Region (DISOPRED)
MGSGHWFRSI*************************************************************AATRIQKAFRAYRARKSIRRLRGTGRFNILI****VQKQTSSAINNIH******************************************************************************************************SWMERWIA**************************************************************
Disordered Region (DISEMBL)
MGSGHWFRSIICLK***********************************NTNGGSDPHINPGFLRISVEERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCMVTEGRIKHKKLENQLKLEAKLHDLEVEWHNGSETMEEILSRIQQREEAAIKRERAMAYAFSHQWRANSSQYLGQAYYSICKDNWGWSWMERWIAARPWEVRVNAKPTKKIKGKQVSNADKFANQLELKVSVSATPN********************
Disordered Region (DISPRO)
****HWFR*IICLKK***********QSA***********************************RISVEERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCMVTEGRIKHKKLENQLKLEAKLHDLEVEWHNGSETMEEILSRIQQREEAAIKRERAMAYAFSHQWRAN**************DNWGWSWMERWIAARPWEV********************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSGHWFRSIICLKKGKQDRSKQGKVQSATEKSNDSNESPSESSGNANANTNGGSDPHINPGFLRISVEERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCMVTEGRIKHKKLENQLKLEAKLHDLEVEWHNGSETMEEILSRIQQREEAAIKRERAMAYAFSHQWRANSSQYLGQAYYSICKDNWGWSWMERWIAARPWEVRVNAKPTKKIKGKQVSNADKFANQLELKVSVSATPNGNKTTKAKKSPPHSINLAVE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	291	2.2.26 [Sep-21-2011]
Q9SF32	454	Protein IQ-DOMAIN 1 OS=Ar	no	no	0.580	0.372	0.363	7e-25
Q8LPG9	668	Protein IQ-DOMAIN 14 OS=A	no	no	0.491	0.214	0.356	4e-17
Q8L4D8	587	Protein IQ-DOMAIN 31 OS=A	no	no	0.491	0.243	0.256	2e-05

>sp|Q9SF32|IQD1_ARATH Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1

 Score =  114 bits (285), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 64/176 (36%), Positives = 102/176 (57%), Gaps = 7/176 (3%)

Query: 63  FLRISVEERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHSVQKQTSSAINNIHSWC 122
           F   S EE AA  IQ  FR + AR+  + +RG  R  +L++   VQ+Q +  +  + +  
Sbjct: 101 FAGKSKEEAAAILIQSTFRGHLARRESQVMRGQERLKLLMEGSVVQRQAAITLKCMQTLS 160

Query: 123 NIQTQIRNRRLCMVTEGRIKHKKLENQLKLEAK-LHDLE--VEWHNGSETMEEILSRIQQ 179
            +Q+QIR+RR+ M  E + +HK+L   L+  AK L  L+    W+  +++ E++ + +  
Sbjct: 161 RVQSQIRSRRIRMSEENQARHKQL---LQKHAKELGGLKNGGNWNYSNQSKEQVEAGMLH 217

Query: 180 REEAAIKRERAMAYAFSHQWRANS-SQYLGQAYYSICKDNWGWSWMERWIAARPWE 234
           + EA ++RERA+AYAF+HQ    S S+     +       WGWSW+ERW+A RPWE
Sbjct: 218 KYEATMRRERALAYAFTHQQNLKSFSKTANPMFMDPSNPTWGWSWLERWMAGRPWE 273

Modulates expression of glucosinolate pathway genes. May associate with nucleic acids and regulate gene expression at the transcriptional or post-transcriptional level.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPG9|IQD14_ARATH Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1

 Score = 89.0 bits (219), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 94/171 (54%), Gaps = 28/171 (16%)

Query: 66  ISVEERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQ 125
           + V+  +AT+IQ AFR Y ARKS R L+G  R   +++ +SV++QT +A+  +     +Q
Sbjct: 318 LPVQHASATKIQGAFRGYMARKSFRALKGLVRLQGVVRGYSVKRQTINAMKYMQQVVRVQ 377

Query: 126 TQIRNRRLCMVTEGRIKHKKLENQLKL---EAKLHDLEV---EWHNGSETMEEILSRIQQ 179
           +QI++RR+ M          LENQ ++   EAK    E     W +   T EE  SR Q+
Sbjct: 378 SQIQSRRIKM----------LENQAQVEKDEAKWAASEAGNDNWDDSVLTKEERDSRSQR 427

Query: 180 REEAAIKRERAMAYAFSHQWRANSSQYLGQAYYSICKDNWG----WSWMER 226
           + +A IKRER+MAYA+S +   NS +          +DN      W+W++R
Sbjct: 428 KTDAIIKRERSMAYAYSRKLWKNSPKS--------TQDNRSFPQWWNWVDR 470

May be involved in cooperative interactions with calmodulins or calmodulin-like proteins. May associate with nucleic acids and regulate gene expression at the transcriptional or post-transcriptional level.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 21/164 (12%)

Query: 70  ERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIR 129
           E AAT +Q AFR Y AR++   L+G  R   LI+ H V++Q  + + ++     +Q   R
Sbjct: 113 EIAATSVQAAFRGYLARRAFWALKGIIRLQALIRGHLVRRQAVATLFSVMGIVRLQAFAR 172

Query: 130 NRRLCMVTEGRIKHKKLENQLKLEAKLHDLEVEWHNGSETMEEILSRIQQREEAAIKRER 189
            R +     G   ++K   QL    KL +                       +A +  ++
Sbjct: 173 GREIRKSDIGVQVYRKCRLQLLQGNKLAN---------------------PTDAYLGIKK 211

Query: 190 AMAYAFSHQWRANSSQYLGQAYYSICKDNWGWSWMERWIAARPW 233
             A AF+ +  A+S + L    Y     N    W+E W A+  W
Sbjct: 212 LTANAFAQKLLASSPKVLPVHAYDTSNPNSNLIWLENWSASCFW 255

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
224056547	302	predicted protein [Populus trichocarpa]	0.945	0.910	0.580	1e-85
224114559	238	predicted protein [Populus trichocarpa]	0.807	0.987	0.663	2e-85
255557055	277	calmodulin binding protein, putative [Ri	0.890	0.935	0.611	4e-85
225461608	309	PREDICTED: protein IQ-DOMAIN 1 [Vitis vi	0.931	0.877	0.585	8e-85
147777594	309	hypothetical protein VITISV_013534 [Viti	0.931	0.877	0.582	2e-84
224116948	312	predicted protein [Populus trichocarpa]	0.979	0.913	0.541	2e-79
388512565	289	unknown [Lotus japonicus]	0.934	0.941	0.558	1e-78
388501682	289	unknown [Lotus japonicus]	0.934	0.941	0.558	3e-78
225443514	306	PREDICTED: protein IQ-DOMAIN 1 [Vitis vi	0.938	0.892	0.561	1e-77
255563056	310	calmodulin binding protein, putative [Ri	0.838	0.787	0.583	6e-76

>gi|224056547|ref|XP_002298904.1| predicted protein [Populus trichocarpa] gi|222846162|gb|EEE83709.1| predicted protein [Populus trichocarpa]

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 169/291 (58%), Positives = 209/291 (71%), Gaps = 16/291 (5%)

Query: 1   MGSGHWFRSIICLKKGKQDRSKQGKVQSATEKSNDSNES-PSESSGNANANTNGGSDPHI 59
           + SG+W +SII  +K K+D SK+ KV SATEK+N S ES P+    +  AN +  S+ H+
Sbjct: 4   LFSGNWLKSIIRTRKAKKDASKKVKVHSATEKANGSKESSPAHGESSNLANGDLESNIHV 63

Query: 60  NPGFLRISVEERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHSVQKQTSSAINNIH 119
            PG   +S E  AA RIQ AFRAY+ARK++ RL+G  RFN+LI  H  QKQ SS +++IH
Sbjct: 64  APG---LSAEYIAAVRIQDAFRAYKARKAMHRLKGAVRFNVLIHGHDTQKQASSTLSHIH 120

Query: 120 SWCNIQTQIRNRRLCMVTEGRIKHKKLENQLKLEAKLHDLEVEWHNGSETMEEILSRIQQ 179
           SW NIQ QIR RR  MVTEGRIK KKLENQLKLEA+L ++EVEW  GS+TMEEILSRIQQ
Sbjct: 121 SWSNIQAQIRARRHHMVTEGRIKQKKLENQLKLEARLQEIEVEWCGGSDTMEEILSRIQQ 180

Query: 180 REEAAIKRERAMAYAFSHQWRANSSQYLGQAYYSICKDNWGWSWMERWIAARPWEVRVNA 239
           REEAA+KRERAMAYAFSHQWRAN +QYLGQAYYS+ K+NWGWSW ERWIAARPWE+RV+A
Sbjct: 181 REEAAVKRERAMAYAFSHQWRANPTQYLGQAYYSLGKENWGWSWKERWIAARPWEIRVHA 240

Query: 240 KPTKKIKGKQVSNADKFANQLELKVSVSATP---NGNKTTKAKKSPPHSIN 287
                    ++ N  K   + E K ++   P   NG  T K+K  P  +++
Sbjct: 241 ---------ELHNLKKAHPKQESKTTLPTKPALSNGKVTAKSKMLPSPAVD 282

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114559|ref|XP_002316795.1| predicted protein [Populus trichocarpa] gi|222859860|gb|EEE97407.1| predicted protein [Populus trichocarpa]

 Score =  322 bits (824), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 162/244 (66%), Positives = 193/244 (79%), Gaps = 9/244 (3%)

Query: 1   MGSGHWFRSIICLKKGKQDRSKQGKVQSATEKSNDSNESP---SESSGNANANTNGGSDP 57
           MGSG+W +SII L+K K+DRSK+ KV SA EK+N+S ESP    ESS  A+A+       
Sbjct: 1   MGSGYWLKSIIGLRKAKRDRSKKVKVHSAIEKANESKESPPTNGESSSFAHADLQSS--- 57

Query: 58  HINPGFLRISVEERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHSVQKQTSSAINN 117
           H  PG   +S E  AA RIQKAFRAY+ARK+++RL+G  RFN+ I     QKQ SS +++
Sbjct: 58  HAVPG---LSAEYIAAVRIQKAFRAYKARKAVQRLKGAVRFNVQIHGQDTQKQASSTLSH 114

Query: 118 IHSWCNIQTQIRNRRLCMVTEGRIKHKKLENQLKLEAKLHDLEVEWHNGSETMEEILSRI 177
           IHSW NIQTQIR RR  MVTEGRIK KKLENQLKL+AKL +LEVEW  GS+TMEEILSRI
Sbjct: 115 IHSWSNIQTQIRARRHHMVTEGRIKQKKLENQLKLDAKLQELEVEWCGGSDTMEEILSRI 174

Query: 178 QQREEAAIKRERAMAYAFSHQWRANSSQYLGQAYYSICKDNWGWSWMERWIAARPWEVRV 237
           QQREEAA+KRERAMAYAFSHQWRAN ++YLGQAYY + ++NWGWSW ERW+AARPWEVRV
Sbjct: 175 QQREEAAVKRERAMAYAFSHQWRANPTRYLGQAYYILGEENWGWSWKERWVAARPWEVRV 234

Query: 238 NAKP 241
           +A+P
Sbjct: 235 HAEP 238

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557055|ref|XP_002519560.1| calmodulin binding protein, putative [Ricinus communis] gi|223541257|gb|EEF42809.1| calmodulin binding protein, putative [Ricinus communis]

 Score =  320 bits (820), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 167/273 (61%), Positives = 200/273 (73%), Gaps = 14/273 (5%)

Query: 3   SGHWFRSIICLKKGKQDRSKQGKVQSATEKSNDSNESPS-----ESSGNANANTNGG--- 54
           SG WFRSIICL+K K+DRSK+ KV S TEKSN    S S     +S GN     N G   
Sbjct: 8   SGDWFRSIICLRKAKEDRSKKVKVHSTTEKSNGCEGSSSTHIEPDSPGNGEIQRNNGVPA 67

Query: 55  -SDPHINPGFLRISVEERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHSVQKQTSS 113
             +   + G   +S E +AA RIQ AFR Y ARKS+RRL+G  RFN+L+Q +  QKQ SS
Sbjct: 68  NEERQRSNGVPGMSAEYKAAIRIQTAFRTYMARKSLRRLKGAVRFNVLVQGNDTQKQASS 127

Query: 114 AINNIHSWCNIQTQIRNRRLCMVTEGRIKHKKLENQLKLEAKLHDLEVEWHNGSETMEEI 173
            +++IHSW  IQ QI+ RR  MVT+GRIK KKLENQLKLEAKL +LEVEW+ GS+TMEEI
Sbjct: 128 TLSHIHSWSYIQAQIKARRHHMVTDGRIKQKKLENQLKLEAKLQELEVEWNGGSDTMEEI 187

Query: 174 LSRIQQREEAAIKRERAMAYAFSHQWRANSSQYLGQAYYSICKDNWGWSWMERWIAARPW 233
           L RIQQREEAA+KRERAMAYAFSHQWRAN +QYLGQAYYSI K+NWGWSW ERWIAARPW
Sbjct: 188 LCRIQQREEAAVKRERAMAYAFSHQWRANPTQYLGQAYYSIGKENWGWSWKERWIAARPW 247

Query: 234 EVRVNAKPTKKIKGKQVSNADKFANQLELKVSV 266
           E+RV+A+P+   KG         A++ E+KV++
Sbjct: 248 EIRVHAQPSYPKKGHSTQ-----ASKSEMKVTI 275

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461608|ref|XP_002282973.1| PREDICTED: protein IQ-DOMAIN 1 [Vitis vinifera] gi|302142924|emb|CBI20219.3| unnamed protein product [Vitis vinifera]

 Score =  319 bits (818), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 167/285 (58%), Positives = 199/285 (69%), Gaps = 14/285 (4%)

Query: 1   MGSGHWFRSIICLKKGKQDRSKQGKVQSATEKSNDS---NESPSESSGNANANTNGGSDP 57
           MG+G WF+ II L+K K+DRSK  KV S TEKS++S   +    ESS  AN      +  
Sbjct: 1   MGAGGWFKMIISLRKVKEDRSKPAKVHSTTEKSSNSKGKHHIDKESSSLANGALGKSAGV 60

Query: 58  HINPGFLRISVEERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHSVQKQTSSAINN 117
           H      +I VEERAA +IQ  +RAY+ARK++ RLRGT RF ++ Q   V+KQ S+ ++ 
Sbjct: 61  H------KIPVEERAAIQIQTTYRAYKARKNLHRLRGTVRFQVMTQGDIVRKQASTTLSY 114

Query: 118 IHSWCNIQTQIRNRRLCMVTEGRIKHKKLENQLKLEAKLHDLEVEWHNGSETMEEILSRI 177
           IH+W  IQ QI  RR CM  EGR++ KKLENQLKLEAKLH+LEVEW  GSETMEEILSRI
Sbjct: 115 IHAWSRIQAQISARRHCMAQEGRVRQKKLENQLKLEAKLHELEVEWCGGSETMEEILSRI 174

Query: 178 QQREEAAIKRERAMAYAFSHQWRANSSQYLGQAYYSICKDNWGWSWMERWIAARPWEVRV 237
           QQREEAA+KRERAMAYAFSHQWRAN+SQYLG  YY + K+NWGWSWMERWIAARPWE RV
Sbjct: 175 QQREEAAVKRERAMAYAFSHQWRANNSQYLGHTYYDLGKENWGWSWMERWIAARPWETRV 234

Query: 238 NAKPT--KKIKGKQVSNADKFANQLELKVSVSATP---NGNKTTK 277
           +A+ T  KK + K V    K  N   +K  V   P   NG  TTK
Sbjct: 235 HAQSTLPKKAQTKHVIKVGKITNPQTMKTPVLVRPALSNGKGTTK 279

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777594|emb|CAN67034.1| hypothetical protein VITISV_013534 [Vitis vinifera]

 Score =  318 bits (815), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 166/285 (58%), Positives = 198/285 (69%), Gaps = 14/285 (4%)

Query: 1   MGSGHWFRSIICLKKGKQDRSKQGKVQSATEKSNDS---NESPSESSGNANANTNGGSDP 57
           MG+G WF+ II L+K K DRSK  KV S TEKS++S   + +  E S  AN      +  
Sbjct: 1   MGAGGWFKMIISLRKVKXDRSKPAKVHSTTEKSSNSKGKHHTDKEXSSLANGALGKSAGV 60

Query: 58  HINPGFLRISVEERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHSVQKQTSSAINN 117
           H      +I VEERAA +IQ  +RAY+ARK++ RLRGT RF ++ Q   V+KQ S+ ++ 
Sbjct: 61  H------KIPVEERAAIQIQTTYRAYKARKNLHRLRGTVRFQVMTQGDIVRKQASTTLSY 114

Query: 118 IHSWCNIQTQIRNRRLCMVTEGRIKHKKLENQLKLEAKLHDLEVEWHNGSETMEEILSRI 177
           IH+W  IQ QI  RR CM  EGR++ KKLENQLKLEAKLH+LEVEW  GSETMEEILSRI
Sbjct: 115 IHAWSRIQAQISARRHCMAQEGRVRQKKLENQLKLEAKLHELEVEWCGGSETMEEILSRI 174

Query: 178 QQREEAAIKRERAMAYAFSHQWRANSSQYLGQAYYSICKDNWGWSWMERWIAARPWEVRV 237
           QQREEAA+KRERAMAYAFSHQWRAN+SQYLG  YY + K+NWGWSWMERWIAARPWE RV
Sbjct: 175 QQREEAAVKRERAMAYAFSHQWRANNSQYLGHTYYDLGKENWGWSWMERWIAARPWETRV 234

Query: 238 NAKPT--KKIKGKQVSNADKFANQLELKVSVSATP---NGNKTTK 277
           +A+ T  KK + K V    K  N   +K  V   P   NG  TTK
Sbjct: 235 HAQSTLPKKAQTKHVIKVGKITNPQTMKTPVLVRPALSNGKGTTK 279

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116948|ref|XP_002317436.1| predicted protein [Populus trichocarpa] gi|222860501|gb|EEE98048.1| predicted protein [Populus trichocarpa]

 Score =  301 bits (771), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 163/301 (54%), Positives = 201/301 (66%), Gaps = 16/301 (5%)

Query: 1   MGSGHWFRSIICLKKGKQDRSKQGKVQSATEKSND---SNESPSESSGNANANTNGGSDP 57
           MGSG WF++II +KK K D SKQ K  S +EKSN     ++   ES+  AN +       
Sbjct: 1   MGSGDWFKTIISIKKVKDDSSKQAKGSSTSEKSNGFKWKHKLQKESASFANGSNRA---- 56

Query: 58  HINPGFLRISVEERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHSVQKQTSSAINN 117
             NP F  + VE+ AATRIQ AFRAYRARK++R L+G  R  I+ Q++S +KQ ++ +N 
Sbjct: 57  --NPRFPDMPVEDLAATRIQTAFRAYRARKTLRCLKGKVRLQIITQNYSFKKQAATTLNY 114

Query: 118 IHSWCNIQTQIRNRRLCMVTEGRIKHKKLENQLKLEAKLHDLEVEWHNGSETMEEILSRI 177
           +HSW  IQ QIR RRL MVTEGR++ KKLENQLKLEAKLHDLEVEW  G ETME+IL+RI
Sbjct: 115 LHSWSQIQAQIRARRLFMVTEGRLRQKKLENQLKLEAKLHDLEVEWSGGCETMEKILARI 174

Query: 178 QQREEAAIKRERAMAYAFSHQWRANSSQYLGQAYYSICKDNWGWSWMERWIAARPWEVRV 237
            QREEAA+KRERAMAYAFSHQWRA+    LG   Y + K NWGWSW ERWIA RPWE RV
Sbjct: 175 HQREEAAVKRERAMAYAFSHQWRASYGHDLGVVNYELGKANWGWSWKERWIATRPWESRV 234

Query: 238 NAKPT--KKIKGKQVSNADKFANQLELKVSVSATP---NGNKTTKAKK--SPPHSINLAV 290
            AK    KK+KG+Q +  D+       K  VS+ P   NG  T  A++   PP    +++
Sbjct: 235 AAKSVSPKKMKGRQANKVDETTKLPTRKTPVSSKPSLFNGKGTPTAQRLSYPPAEKRVSL 294

Query: 291 E 291
           E
Sbjct: 295 E 295

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512565|gb|AFK44344.1| unknown [Lotus japonicus]

 Score =  299 bits (765), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 163/292 (55%), Positives = 204/292 (69%), Gaps = 20/292 (6%)

Query: 1   MGSGHWFRSIICLKKGKQDRSKQGKVQSATEKSNDSNESPSESSGNANANTNGGSDPHIN 60
           MG   WF  I+  KK K+D+SKQ KVQS  E   +SN+SP     N   +T+  S+   N
Sbjct: 3   MGPKKWFMIIVKRKKRKEDKSKQEKVQSTPE---NSNKSP-----NGMQSTHEESNIIPN 54

Query: 61  PGFLRIS------VEERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHSVQKQTSSA 114
              +R        +++ AATRIQ AFR++ AR++I+ LRG  +F  LIQDH  ++QT++ 
Sbjct: 55  ESLMRDRTVPSRLIDDIAATRIQNAFRSFMARRTIQHLRGAVKFEALIQDHMAREQTATT 114

Query: 115 INNIHSWCNIQTQIRNRRLCMVTEGRIKHKKLENQLKLEAKLHDLEVEWHNGSETMEEIL 174
           ++ IHSW  IQ QI+ RR CM+TE +IK +KLENQ KLEAKLH+L+VEW +GSETMEEIL
Sbjct: 115 LSYIHSWSRIQDQIKARRFCMITEAKIKQRKLENQFKLEAKLHELKVEWCSGSETMEEIL 174

Query: 175 SRIQQREEAAIKRERAMAYAFSHQWRANSSQYLGQAYYSICKDNWGWSWMERWIAARPWE 234
           SRI QREEAAIKRERAMAYAFSHQWR N SQY GQA YS+ K++WGWSWMERWIAARPWE
Sbjct: 175 SRIHQREEAAIKRERAMAYAFSHQWRPNCSQYFGQASYSLGKESWGWSWMERWIAARPWE 234

Query: 235 VRVNAK---PTKKIKGKQV-SNADKFANQLELKVSVS--ATPNGNKTTKAKK 280
           VRV  +    TKK+ G+Q  +  DK  N  E KV ++  A  NG+KT K KK
Sbjct: 235 VRVRVQQSPKTKKLNGQQQKAKLDKMNNNNESKVCLAKPAMSNGDKTDKGKK 286

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501682|gb|AFK38907.1| unknown [Lotus japonicus]

 Score =  298 bits (762), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 163/292 (55%), Positives = 203/292 (69%), Gaps = 20/292 (6%)

Query: 1   MGSGHWFRSIICLKKGKQDRSKQGKVQSATEKSNDSNESPSESSGNANANTNGGSDPHIN 60
           MG   WF  I+  KK K+D+SKQ KVQS  E   +SN+SP     N   +T+  S+   N
Sbjct: 3   MGPKKWFMIIVKRKKRKEDKSKQEKVQSTPE---NSNKSP-----NGMQSTHEESNIIPN 54

Query: 61  PGFLRIS------VEERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHSVQKQTSSA 114
              +R        +++ AATRIQ AFR++ AR++I+ LRG  +F  LIQDH  ++QT++ 
Sbjct: 55  ESLMRDRTVPSRLIDDIAATRIQNAFRSFMARRTIQHLRGVVKFEALIQDHMAREQTATT 114

Query: 115 INNIHSWCNIQTQIRNRRLCMVTEGRIKHKKLENQLKLEAKLHDLEVEWHNGSETMEEIL 174
           ++ IHSW  IQ QI+ RR CM+TE +IK +KLENQ KLEAKLH+LEVEW +GSETMEEIL
Sbjct: 115 LSYIHSWSRIQDQIKARRFCMITEAKIKQRKLENQFKLEAKLHELEVEWCSGSETMEEIL 174

Query: 175 SRIQQREEAAIKRERAMAYAFSHQWRANSSQYLGQAYYSICKDNWGWSWMERWIAARPWE 234
           SRI QREEAAIKRERAMAYAFSHQW  N SQY GQA YS+ K++WGWSWMERWIAARPWE
Sbjct: 175 SRIHQREEAAIKRERAMAYAFSHQWGPNCSQYFGQASYSLGKESWGWSWMERWIAARPWE 234

Query: 235 VRVNAK---PTKKIKGKQV-SNADKFANQLELKVSVS--ATPNGNKTTKAKK 280
           VRV  +    TKK+ G+Q  +  DK  N  E KV ++  A  NG+KT K KK
Sbjct: 235 VRVRVQQSPKTKKLNGQQQKAKLDKMNNNNESKVCLAKPAMSNGDKTDKGKK 286

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443514|ref|XP_002272018.1| PREDICTED: protein IQ-DOMAIN 1 [Vitis vinifera] gi|297740471|emb|CBI30653.3| unnamed protein product [Vitis vinifera]

 Score =  296 bits (757), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 159/283 (56%), Positives = 193/283 (68%), Gaps = 10/283 (3%)

Query: 1   MGSGHWFRSIICLKKGKQDRSKQGKVQSATEKSND---SNESPSESSGNANANTNGGSDP 57
           MGSG WF++I+  KK K D S++ K  S   KSN     + +   S+G +  +T+G    
Sbjct: 1   MGSGDWFKAILSSKKVKGDNSRKTKGTSTDAKSNGFKWRSRTLKGSTGFSYGSTSG---- 56

Query: 58  HINPGFLRISVEERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHSVQKQTSSAINN 117
             NPG L I VE+ AATRIQ AFRA+ ARK++RRL+G  R   L Q   V+KQ S+ ++ 
Sbjct: 57  --NPGVLGIPVEDIAATRIQTAFRAFMARKTLRRLKGIVRLQKLTQGDCVRKQASTTLSY 114

Query: 118 IHSWCNIQTQIRNRRLCMVTEGRIKHKKLENQLKLEAKLHDLEVEWHNGSETMEEILSRI 177
           + SW  IQTQIR RRLCMVTEGRI+ KKLENQLKL+AKLHDLEVEW  G ETMEEIL+RI
Sbjct: 115 LSSWSRIQTQIRARRLCMVTEGRIRQKKLENQLKLDAKLHDLEVEWCGGPETMEEILARI 174

Query: 178 QQREEAAIKRERAMAYAFSHQWRANSSQYLGQAYYSICKDNWGWSWMERWIAARPWEVRV 237
             REEAA+KRERA+AYAFSHQWRANS Q  G     + K NWGWSWMERWIAARPWE RV
Sbjct: 175 YHREEAAVKRERALAYAFSHQWRANSGQNQGPNKSGLSKANWGWSWMERWIAARPWESRV 234

Query: 238 NAKPTKKIKGKQVSNADKFANQLELKVSVSATPNGNKTTKAKK 280
           +  P KK + +Q +   K       KV V+  PNG  TTKA++
Sbjct: 235 HISP-KKAQSRQKNKVGKNIISPTTKVPVTVNPNGKGTTKARR 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563056|ref|XP_002522532.1| calmodulin binding protein, putative [Ricinus communis] gi|223538223|gb|EEF39832.1| calmodulin binding protein, putative [Ricinus communis]

 Score =  290 bits (741), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 151/259 (58%), Positives = 181/259 (69%), Gaps = 15/259 (5%)

Query: 1   MGSGHWFRSIICLKKGKQDRSKQGKVQSATEKSNDSN--ESPSESSGNANANTNGGSDPH 58
           MGSG WF++II LKK K D SK+ K  SA  KSN       P + S  +           
Sbjct: 1   MGSGDWFKTIISLKKVKDDSSKRVKDSSAAAKSNGFKWKNQPRKKSATS----------- 49

Query: 59  INPGFLRISVEERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHSVQKQTSSAINNI 118
            NP  L + VE+ AATRIQ AFRAY ARKS+ RL+G  R   L Q++S++KQ ++ +N++
Sbjct: 50  CNPRVLDMPVEDFAATRIQTAFRAYMARKSLHRLKGAVRLQNLTQNYSIKKQAATTLNHL 109

Query: 119 HSWCNIQTQIRNRRLCMVTEGRIKHKKLENQLKLEAKLHDLEVEWHNGSETMEEILSRIQ 178
           HSW  IQ QIR+RR CMV EGR++ K+LENQLKLEA+LH LEVEW +GSETMEE L+RI 
Sbjct: 110 HSWSKIQGQIRDRRHCMVREGRLRQKRLENQLKLEAELHHLEVEWSDGSETMEETLARIH 169

Query: 179 QREEAAIKRERAMAYAFSHQWRANSSQYLGQAYYSICKDNWGWSWMERWIAARPWEVRVN 238
           QREEAA+KRERAMAYAFSHQWRANSSQYLG   Y + K NWGWSW ERWIAARPWE RV 
Sbjct: 170 QREEAAVKRERAMAYAFSHQWRANSSQYLGLVNYELGKANWGWSWTERWIAARPWESRVP 229

Query: 239 AKPT--KKIKGKQVSNADK 255
           A     KK++ KQ +   K
Sbjct: 230 AHSISPKKVQNKQANKGGK 248

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
TAIR|locus:2086385	259	IQD10 "AT3G15050" [Arabidopsis	0.711	0.799	0.598	2e-69
TAIR|locus:2055430	263	iqd9 "AT2G33990" [Arabidopsis	0.721	0.798	0.532	3.8e-60
TAIR|locus:2090409	422	IQD5 "AT3G22190" [Arabidopsis	0.697	0.481	0.371	4.5e-38
TAIR|locus:2057459	416	IQD6 "AT2G26180" [Arabidopsis	0.979	0.685	0.313	9.8e-32
TAIR|locus:2066226	527	Iqd4 "AT2G26410" [Arabidopsis	0.728	0.402	0.336	8.6e-30
TAIR|locus:2030225	414	iqd8 "AT1G72670" [Arabidopsis	0.707	0.497	0.327	2e-28
TAIR|locus:2100504	430	IQD3 "AT3G52290" [Arabidopsis	0.731	0.495	0.319	7.3e-27
TAIR|locus:2143503	461	iqd2 "AT5G03040" [Arabidopsis	0.738	0.466	0.318	2.8e-25
TAIR|locus:2097478	517	IQD13 "AT3G59690" [Arabidopsis	0.687	0.386	0.321	1.3e-21
TAIR|locus:2043959	669	IQD14 "AT2G43680" [Arabidopsis	0.522	0.227	0.364	1.5e-17

TAIR|locus:2086385 IQD10 "AT3G15050" [Arabidopsis thaliana (taxid:3702)]

 Score = 647 (232.8 bits), Expect = 2.0e-69, Sum P(2) = 2.0e-69
 Identities = 125/209 (59%), Positives = 156/209 (74%)

Query:    65 RISVEERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHSVQKQTSSAINNIHSWCNI 124
             +++VE  A  RIQKAFRA++ARK +  L+   RFN LIQ H+V  QTS+A+N IHSW +I
Sbjct:    46 KLTVEV-AVIRIQKAFRAFKARKRLCSLKSARRFNSLIQGHTVMNQTSTALNVIHSWYDI 104

Query:   125 QTQIRNRRLCMVTEGRIKHKKLENQLKLEAKLHDLEVEWHNGSETMEEILSRIQQREEAA 184
             Q QIR RRL MVT+GR++HK+LEN+LKLE KLH+LEVEW  GSETMEEIL++IQQ+EEA 
Sbjct:   105 QNQIRARRLYMVTQGRLQHKRLENRLKLEIKLHELEVEWCGGSETMEEILAKIQQKEEAT 164

Query:   185 IKRERAMAYAFSHQWRANSSQYLGQAYYSICKDNWGWSWMERWIAARPWEVRVNAKPTKK 244
             +KRERAMAYAFSHQWRAN++QYLGQA +++ K++WGWSW ERWIAARPWE+R      K 
Sbjct:   165 VKRERAMAYAFSHQWRANATQYLGQASFNLGKESWGWSWKERWIAARPWEIRAQCYVVKP 224

Query:   245 IKGKQVSNADKFANQLELKVSVSATPNGN 273
             IK  +        N +  K S      GN
Sbjct:   225 IKPSKKPEKSS-PNNVITKTSAKPDEVGN 252

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2055430 iqd9 "AT2G33990" [Arabidopsis thaliana (taxid:3702)]

 Score = 578 (208.5 bits), Expect = 3.8e-60, Sum P(2) = 3.8e-60
 Identities = 114/214 (53%), Positives = 148/214 (69%)

Query:    69 EERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQI 128
             E+ AATRIQ AF+AY+ARKS+RRL+G  R  +  +  SV+ Q    +  +HSW  IQ++I
Sbjct:    46 EDWAATRIQTAFKAYKARKSLRRLKGIARAKLSTEKQSVKNQAVVTLRYLHSWSKIQSEI 105

Query:   129 RNRRLCMVTEGRIKHKKLENQLKLEAKLHDLEVEWHNGSETMEEILSRIQQREEAAIKRE 188
             + RR+CMVTE R+K+K+LE+Q KLEAKLHD+EVEW+ GSET +EIL RI QREEA IKRE
Sbjct:   106 KARRVCMVTEWRLKNKRLEHQQKLEAKLHDVEVEWNGGSETKDEILERILQREEATIKRE 165

Query:   189 RAMAYAFSHQWRANS-SQYLGQAYYSICKDNWGWSWMERWIAARPWEVRVNAKPTKKIKG 247
             RA+AYAFSHQW+A+  +Q+LG   Y +   NWGWSW ERWI+ARPWEVR +  P K    
Sbjct:   166 RALAYAFSHQWKADGKTQWLGS--YELGNTNWGWSWKERWISARPWEVRYSVTPKKPKSS 223

Query:   248 KQVSNAD-KFANQLELKVSVSATPNGNKTTKAKK 280
             K  SN+  K    L    + +  P    T K ++
Sbjct:   224 KTDSNSPAKRTVSLSSVPAKTPFPGARNTVKPRR 257

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2090409 IQD5 "AT3G22190" [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 4.5e-38, Sum P(2) = 4.5e-38
 Identities = 78/210 (37%), Positives = 127/210 (60%)

Query:    67 SVEERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQT 126
             S E RAATRIQ A+R + AR+++R L+G  R   L++ H+V+KQ +  +  + +   +Q 
Sbjct:    85 SRENRAATRIQTAYRGFLARRALRALKGLVRLQALVRGHAVRKQAAVTLRCMQALVRVQA 144

Query:   127 QIRNRR--LCMVTEGRIKHKKLENQLKLEAKLHDLEVEWHNGSETMEEILSRIQQREEAA 184
             ++R RR  L +  E     + L+ QL  EA++ ++E  W +   ++E+I +++ +R+EAA
Sbjct:   145 RVRARRVRLALELESETSQQTLQQQLADEARVREIEEGWCDSIGSVEQIQAKLLKRQEAA 204

Query:   185 IKRERAMAYAFSHQWRANSSQYLGQAYYSICKDNWGWSWMERWIAARPWEVRV---NAKP 241
              KRERAMAYA +HQW+A +      + +   K+NWGW+W+ERW+A RPWE R    N + 
Sbjct:   205 AKRERAMAYALTHQWQAGTRLLSAHSGFQPDKNNWGWNWLERWMAVRPWENRFLDSNLRD 264

Query:   242 TKKIKGKQVSNADKFANQLELKVSVSATPN 271
               K+ G+      +   + ++K SVS  PN
Sbjct:   265 DAKL-GENGMEQSENVPKTQIK-SVSKMPN 292

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2057459 IQD6 "AT2G26180" [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 97/309 (31%), Positives = 146/309 (47%)

Query:     1 MG-SGHWFRSIICLKKGKQD-------RSKQGKVQSATE----KXXXXXXXXXXXXXXXX 48
             MG SG W +SII LKK ++D       ++K+ K+   T     K                
Sbjct:     1 MGASGKWVKSIIGLKKLEKDEIEKGNGKNKKWKLWRTTSVDSWKGFRGKHRSDSDGVDSS 60

Query:    49 XXXXXXXDPHIN--PGFLRISVEERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHS 106
                       +   P   +   EE AA RIQ AFR + AR+++R L+G  R   L++   
Sbjct:    61 TVYSAAVATVLRAPPKDFKAVREEWAAIRIQTAFRGFLARRALRALKGIVRLQALVRGRQ 120

Query:   107 VQKQTSSAINNIHSWCNIQTQIRNRRLCMVTEGRIKHKKLENQLKLEAKLHDLEVEWHNG 166
             V+KQ +  +  + +   +Q ++R RR+ M  EG+   K L+        L ++E  W + 
Sbjct:   121 VRKQAAVTLRCMQALVRVQARVRARRVRMTVEGQAVQKLLDEHRTKSDLLKEVEEGWCDR 180

Query:   167 SETMEEILSRIQQREEAAIKRERAMAYAFSH-QWRANSSQYLGQ----AYYS---ICKDN 218
               T+++I S++QQR+E A KRERA+AYA +  QWR+ +S  L      +Y       K++
Sbjct:   181 KGTVDDIKSKLQQRQEGAFKRERALAYALAQKQWRSTTSSNLKTNSSISYLKSQEFDKNS 240

Query:   219 WGWSWMERWIAARPWEVRVNAKPTKKIKGKQVSNADKFANQLELKVSVSATPNGNKTTKA 278
             WGWSW+ERW+AARPWE R+    T            K     E    V    N   T  +
Sbjct:   241 WGWSWLERWMAARPWETRL--MDTVDTAATPPPLPHKHLKSPETADVVQVRRNNVTTRVS 298

Query:   279 KKSPPHSIN 287
              K PPH ++
Sbjct:   299 AKPPPHMLS 307

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2066226 Iqd4 "AT2G26410" [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 8.6e-30, P = 8.6e-30
 Identities = 75/223 (33%), Positives = 129/223 (57%)

Query:    67 SVEERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQT 126
             S EE AA +IQ A+R Y AR+++R LRG  R   L+Q   V++Q ++ ++++ +   +QT
Sbjct:   145 SKEETAAIKIQNAYRCYTARRTLRALRGMARLKSLLQGKYVKRQMNAMLSSMQTLTRLQT 204

Query:   127 QIRNRRLCMVTEGRIKHKKLENQLKLEAKLHDLEV--EWHNGSETMEEILSRIQQREEAA 184
             QI+ RR  +  E + +H+ ++ +   +    +L     + + +++ E+I++R   R+EA+
Sbjct:   205 QIQERRNRLSAENKTRHRLIQQKGHQKENHQNLVTAGNFDSSNKSKEQIVARSVNRKEAS 264

Query:   185 IKRERAMAYAFSHQ--WRANSSQYLGQAYYSICKDNWGWSWMERWIAARPWEV-----RV 237
             ++RERA+AYA+SHQ  WR NSS+   Q        +WGWSW+ERW+A+RPW+      +V
Sbjct:   265 VRRERALAYAYSHQQTWR-NSSKLPHQTLMDTNTTDWGWSWLERWMASRPWDAESIDDQV 323

Query:   238 NAKPTKKIKGKQVSNADKFANQLELKVSVSATPNGNKTTKAKK 280
             + K + K +    S+  +   Q     S    P  N T K++K
Sbjct:   324 SVKSSLKRENSIKSSPARSKTQKSASQSSIQWPVNNDT-KSRK 365

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2030225 iqd8 "AT1G72670" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
 Identities = 72/220 (32%), Positives = 111/220 (50%)

Query:    70 ERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIR 129
             E AATRIQ AFRA+ AR+++R L+   R   + +   V+KQ    +  + +   +Q ++R
Sbjct:    93 EWAATRIQAAFRAFLARQALRALKAVVRIQAIFRGRQVRKQADVTLRCMQALVRVQARVR 152

Query:   130 NRRLCMVTEGRIKHKKLENQLKLEAKLHDLEVEWHNGSETMEEILSRIQQREEAAIKRER 189
                    ++G+   K  + Q    AK    E  W +   ++ E+ +++Q R+E AIKRER
Sbjct:   153 AHCNRGPSDGQELEKPSDQQKDDPAK--QAEKGWCDSPGSINEVRTKLQMRQEGAIKRER 210

Query:   190 AMAYAFSHQWRANSSQYLGQAYYSI------CKDNWGWSWMERWIAARPWEVRVNAKPTK 243
             AM YA +HQ R   S        S+      CK + GW+W++RW+A RPWE R+   PT 
Sbjct:   211 AMVYALTHQPRTCPSPAKASKQGSVKKNNGSCKSSPGWNWLDRWVADRPWEGRLMEGPTN 270

Query:   244 KIKGKQVSNADKFANQLELKVSVSATPNGNKTTKAKKSPP 283
               +     NA K  + +    +V    N N TT+    PP
Sbjct:   271 SSE-----NARKSESSVSEHDTVQVRKN-NLTTRVLARPP 304

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

TAIR|locus:2100504 IQD3 "AT3G52290" [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 70/219 (31%), Positives = 116/219 (52%)

Query:    67 SVEERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQT 126
             S+EE AA +IQ AFR Y AR+++R LRG  R   L+Q   V++Q +S + ++ +   +Q 
Sbjct:   105 SMEEIAAIKIQTAFRGYMARRALRALRGLVRLKSLVQGKCVRRQATSTLQSMQTLARVQY 164

Query:   127 QIRNRRLCMVTEGRIKHKKLENQLKLEAKLHDLEVEWHNGSETMEEILSRIQQREEAAIK 186
             QIR RRL +  + +   ++L  Q K           W++ + + E++ + +  ++ A ++
Sbjct:   165 QIRERRLRLSEDKQALTRQL--QQKHNKDFDKTGENWNDSTLSREKVEANMLNKQVATMR 222

Query:   187 RERAMAYAFSHQ--WRANSSQYLGQAYYSICKDNWGWSWMERWIAARPWEVRVNAKPTKK 244
             RE+A+AYAFSHQ  W+ NS++   Q +      +WGWSW+ERW+AARP E   +  P   
Sbjct:   223 REKALAYAFSHQNTWK-NSTKMGSQTFMDPNNPHWGWSWLERWMAARPNENH-SLTPDNA 280

Query:   245 IKGKQVSNADKFANQLELKVSVSATPNGNKTTKAKKSPP 283
              K     +    A    +    + +P G      + S P
Sbjct:   281 EKDSSARSVASRAMSEMIPRGKNLSPRGKTPNSRRGSSP 319

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2143503 iqd2 "AT5G03040" [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 2.8e-25, P = 2.8e-25
 Identities = 73/229 (31%), Positives = 122/229 (53%)

Query:    67 SVEERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQT 126
             S EE AA  IQ  FR Y AR+++R +RG  R  +L++   V++Q ++ +  + +   +Q+
Sbjct:   112 SNEEAAAILIQTIFRGYLARRALRAMRGLVRLKLLMEGSVVKRQAANTLKCMQTLSRVQS 171

Query:   127 QIRNRRLCMVTEGRIKHKKL-ENQLKLEAKLHDLEVEWHNGSETMEEILSRIQQREEAAI 185
             QIR RR+ M  E + + K+L +   K  A L + +  W++  ++ E++ + +  + EA +
Sbjct:   172 QIRARRIRMSEENQARQKQLLQKHAKELAGLKNGD-NWNDSIQSKEKVEANLLSKYEATM 230

Query:   186 KRERAMAYAFSHQ--WRANSSQYLGQAYYSICKDNWGWSWMERWIAARPWEV----RVNA 239
             +RERA+AY++SHQ  W+ N+S+     +       WGWSW+ERW+A RP E     + N+
Sbjct:   231 RRERALAYSYSHQQNWK-NNSKSGNPMFMDPSNPTWGWSWLERWMAGRPLESSEKEQSNS 289

Query:   240 KPTKKIKGKQVSNADKFANQLELKVSVSA-TPNGNKTTKAKK----SPP 283
                     K   N ++ A  L    S    TP+  + T   K    SPP
Sbjct:   290 NNDNAASVKGSINRNEAAKSLTRNGSTQPNTPSSARGTPRNKNSFFSPP 338

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2097478 IQD13 "AT3G59690" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 1.3e-21, P = 1.3e-21
 Identities = 71/221 (32%), Positives = 127/221 (57%)

Query:    68 VEERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQ 127
             V+   A +IQ AFR Y AR+S R L+G  R   +++ HSV++QT +A+  +     +QTQ
Sbjct:   167 VKNAYAIKIQAAFRGYMARRSFRALKGLVRLQGVVRGHSVKRQTMNAMKYMQLLVRVQTQ 226

Query:   128 IRNRRLCMVTEGRIKHKKLENQLKLEAKLHDLEVEWHNGSETMEEILSRIQQREEAAIKR 187
             +++RR+ M+ E R ++ K + +L + +++ D   +W +   T EE   R+ ++ +A IKR
Sbjct:   227 VQSRRIQML-ENRARNDKDDTKL-VSSRMSD---DWDDSVLTKEEKDVRLHRKIDAMIKR 281

Query:   188 ERAMAYAFSHQ-WRAN--SSQYLGQAYYSICKDNWGWSWMERWIAA-RPWEVRVNAKPTK 243
             ER+MAYA+SHQ W+ +  S+Q +  + + +    W W+W++R     +P+ +     PT+
Sbjct:   282 ERSMAYAYSHQLWKNSPKSAQDIRTSGFPL----W-WNWVDRQKNQNQPFRLT----PTR 332

Query:   244 KIKGKQVSNADKFANQLELKVSV-SATPNGNKTTKAKKSPP 283
                  Q  ++++  N   L  S  ++TPN +K+T    S P
Sbjct:   333 PSLSPQPQSSNQ--NHFRLNNSFDTSTPNSSKSTFVTPSRP 371

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2043959 IQD14 "AT2G43680" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.5e-17, P = 1.5e-17
 Identities = 59/162 (36%), Positives = 96/162 (59%)

Query:    66 ISVEERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQ 125
             + V+  +AT+IQ AFR Y ARKS R L+G  R   +++ +SV++QT +A+  +     +Q
Sbjct:   319 LPVQHASATKIQGAFRGYMARKSFRALKGLVRLQGVVRGYSVKRQTINAMKYMQQVVRVQ 378

Query:   126 TQIRNRRLCMVTEGRIKHKKLENQLKLEAKLHDLEVEWHNGSETMEEILSRIQQREEAAI 185
             +QI++RR+ M+ E + + +K E +       +D    W +   T EE  SR Q++ +A I
Sbjct:   379 SQIQSRRIKML-ENQAQVEKDEAKWAASEAGND---NWDDSVLTKEERDSRSQRKTDAII 434

Query:   186 KRERAMAYAFSHQ-WRANSSQYLGQAYYSICKDNWGWSWMER 226
             KRER+MAYA+S + W+ NS +   Q   S     W W+W++R
Sbjct:   435 KRERSMAYAYSRKLWK-NSPKST-QDNRSF--PQW-WNWVDR 471

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	291
PF00612	21	IQ: IQ calmodulin-binding motif; InterPro: IPR0000	98.09
KOG0160	862	consensus Myosin class V heavy chain [Cytoskeleton	97.68
smart00015	26	IQ Short calmodulin-binding motif containing conse	97.63
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.05
KOG0160	862	consensus Myosin class V heavy chain [Cytoskeleton	96.57
PTZ00014	821	myosin-A; Provisional	96.47
PF00612	21	IQ: IQ calmodulin-binding motif; InterPro: IPR0000	94.9
KOG2128	1401	consensus Ras GTPase-activating protein family - I	94.63
KOG0164	1001	consensus Myosin class I heavy chain [Cytoskeleton	94.4
COG5022	1463	Myosin heavy chain [Cytoskeleton]	93.79
smart00015	26	IQ Short calmodulin-binding motif containing conse	91.92
KOG0520	975	consensus Uncharacterized conserved protein, conta	89.26
PTZ00014	821	myosin-A; Provisional	88.07
KOG4427	1096	consensus E3 ubiquitin protein ligase [Posttransla	82.71
KOG0377	631	consensus Protein serine/threonine phosphatase RDG	80.8
KOG2128	1401	consensus Ras GTPase-activating protein family - I	80.27

>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K

Probab=98.09  E-value=3.8e-06  Score=49.83  Aligned_cols=21  Identities=43%  Similarity=0.572  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHhhHHHHHHhh
Q 036720           70 ERAATRIQKAFRAYRARKSIR   90 (291)
Q Consensus        70 e~AAi~IQsafRGylARr~lr   90 (291)
                      ..|||.||+.||||++|+.|+
T Consensus         1 ~~aai~iQ~~~R~~~~Rk~~k   21 (21)
T PF00612_consen    1 RKAAIIIQSYWRGYLARKRYK   21 (21)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcC
Confidence            368999999999999999885

The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....

>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]

Probab=97.68  E-value=0.00011  Score=78.75  Aligned_cols=68  Identities=21%  Similarity=0.135  Sum_probs=52.8

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHhhhhh-hhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 036720           67 SVEERAATRIQKAFRAYRARKSIRRLR-GTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCMVTE  138 (291)
Q Consensus        67 ~~ee~AAi~IQsafRGylARr~lr~Lk-givrLQalvRG~lvRrQ~~~tl~~~~a~vkIQa~vR~rr~R~~~e  138 (291)
                      .....+++.||..||||+.|+.|..++ +++.+|+++||+++|+.   .+ ...+++.||..+|++..|+.|.
T Consensus       670 ~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~---~~-~~~aai~~q~~~r~~~~r~~y~  738 (862)
T KOG0160|consen  670 DVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRE---TE-REAAAIGIQKECRSYLNRRRYR  738 (862)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh---hH-HHHHHHHhHHHHHHHHHHHHHH
Confidence            344567888999999999999999765 88999999999999982   22 4556677777777766666553

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues

Probab=97.63  E-value=5.8e-05  Score=46.83  Aligned_cols=22  Identities=50%  Similarity=0.588  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhh
Q 036720           69 EERAATRIQKAFRAYRARKSIR   90 (291)
Q Consensus        69 ee~AAi~IQsafRGylARr~lr   90 (291)
                      .+.||+.||+.||||++|+.|+
T Consensus         2 ~~~aa~~IQa~~Rg~~~r~~y~   23 (26)
T smart00015        2 LTRAAIIIQAAWRGYLARKRYK   23 (26)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Confidence            4689999999999999999984

Calmodulin-binding motif.

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.05  E-value=0.00061  Score=73.58  Aligned_cols=74  Identities=24%  Similarity=0.281  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhhhh-hhhHHHhhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhhhhhhhh
Q 036720           68 VEERAATRIQKAFRAYRARKSIRRLR-GTGRFNILIQDHSVQKQTSSAIN-------NIHSWCNIQTQIRNRRLCMVTEG  139 (291)
Q Consensus        68 ~ee~AAi~IQsafRGylARr~lr~Lk-givrLQalvRG~lvRrQ~~~tl~-------~~~a~vkIQa~vR~rr~R~~~e~  139 (291)
                      ....||..||.-||||+.|+.|..++ -+|+||+.+||+.+|++|.....       -+.+|-++|+-+|++..+...|.
T Consensus       808 ~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~  887 (975)
T KOG0520|consen  808 SDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEE  887 (975)
T ss_pred             cchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhc
Confidence            34568999999999999999999665 79999999999999999963222       33468889999999998888776


Q ss_pred             hh
Q 036720          140 RI  141 (291)
Q Consensus       140 ~~  141 (291)
                      ..
T Consensus       888 ~~  889 (975)
T KOG0520|consen  888 QE  889 (975)
T ss_pred             cc
Confidence            54

>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]

Probab=96.57  E-value=0.0067  Score=65.32  Aligned_cols=66  Identities=17%  Similarity=0.010  Sum_probs=56.6

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHhhhhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 036720           67 SVEERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCM  135 (291)
Q Consensus        67 ~~ee~AAi~IQsafRGylARr~lr~LkgivrLQalvRG~lvRrQ~~~tl~~~~a~vkIQa~vR~rr~R~  135 (291)
                      +....+++.||+.+||+++|+..-.-...+.+|..+|++..|++|..   ...+++.||+.+|+..+|.
T Consensus       693 ~~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y~~---~~~~~~~~qs~~r~~~~r~  758 (862)
T KOG0160|consen  693 LQLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRYRA---LIPASITIQSGVRAMLARN  758 (862)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcc
Confidence            46678999999999999999833333578999999999999999954   4789999999999999987

>PTZ00014 myosin-A; Provisional

Probab=96.47  E-value=0.0032  Score=67.70  Aligned_cols=41  Identities=10%  Similarity=0.211  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHhhHHHHHHhhhh-hhhhHHHhhhhhHHHHHHH
Q 036720           71 RAATRIQKAFRAYRARKSIRRL-RGTGRFNILIQDHSVQKQT  111 (291)
Q Consensus        71 ~AAi~IQsafRGylARr~lr~L-kgivrLQalvRG~lvRrQ~  111 (291)
                      ..|+.||++||||++|+.|..+ .++++||+.+||+++++..
T Consensus       778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~  819 (821)
T PTZ00014        778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI  819 (821)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3688999999999999999964 5899999999999998753

>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K

Probab=94.90  E-value=0.025  Score=33.34  Aligned_cols=19  Identities=5%  Similarity=-0.055  Sum_probs=15.4

Q ss_pred             hhhhHHHhhhhhHHHHHHH
Q 036720           93 RGTGRFNILIQDHSVQKQT  111 (291)
Q Consensus        93 kgivrLQalvRG~lvRrQ~  111 (291)
                      +++|.||+.+||+++|+++
T Consensus         2 ~aai~iQ~~~R~~~~Rk~~   20 (21)
T PF00612_consen    2 KAAIIIQSYWRGYLARKRY   20 (21)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            4678888888888888876

The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....

>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]

Probab=94.63  E-value=0.077  Score=59.51  Aligned_cols=72  Identities=18%  Similarity=0.116  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHhhHHH---HHHhh--hhhhhhHHHhhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhhhhh
Q 036720           68 VEERAATRIQKAFRAYRA---RKSIR--RLRGTGRFNILIQDHSVQKQTSSAIN----NIHSWCNIQTQIRNRRLCMVTE  138 (291)
Q Consensus        68 ~ee~AAi~IQsafRGylA---Rr~lr--~LkgivrLQalvRG~lvRrQ~~~tl~----~~~a~vkIQa~vR~rr~R~~~e  138 (291)
                      ......+.||+++|||+.   +..|.  ..+.+|.+|++.||+++|+.+...+.    |+.+.+.||+.+|++..|..+.
T Consensus       563 ~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~  642 (1401)
T KOG2128|consen  563 KQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYK  642 (1401)
T ss_pred             hcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHH
Confidence            356789999999999994   22222  44689999999999999999874444    7779999999999999888765


Q ss_pred             h
Q 036720          139 G  139 (291)
Q Consensus       139 ~  139 (291)
                      .
T Consensus       643 ~  643 (1401)
T KOG2128|consen  643 L  643 (1401)
T ss_pred             H
Confidence            4

>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]

Probab=94.40  E-value=0.092  Score=55.90  Aligned_cols=57  Identities=19%  Similarity=0.258  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHhhHHHHHHhhhhhhh-hHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 036720           70 ERAATRIQKAFRAYRARKSIRRLRGT-GRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCMVT  137 (291)
Q Consensus        70 e~AAi~IQsafRGylARr~lr~Lkgi-vrLQalvRG~lvRrQ~~~tl~~~~a~vkIQa~vR~rr~R~~~  137 (291)
                      -.-|+.||.+|||+++|..|+.++.+ +.++ ..|.+-++-          .+-.||.++|+.+.++-+
T Consensus       696 ~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~ks----------~v~el~~~~rg~k~~r~y  753 (1001)
T KOG0164|consen  696 PSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKLKS----------YVQELQRRFRGAKQMRDY  753 (1001)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH----------HHHHHHHHHHhhhhcccc
Confidence            35689999999999999999998854 4444 566444432          334578888887766544

>COG5022 Myosin heavy chain [Cytoskeleton]

Probab=93.79  E-value=0.11  Score=58.71  Aligned_cols=66  Identities=15%  Similarity=0.205  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhh-hhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 036720           68 VEERAATRIQKAFRAYRARKSIR-RLRGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLC  134 (291)
Q Consensus        68 ~ee~AAi~IQsafRGylARr~lr-~LkgivrLQalvRG~lvRrQ~~~tl~~~~a~vkIQa~vR~rr~R  134 (291)
                      .-...|++||++|||++.|++|. +++.+..+|.+.+|..+|+.+...+ -.....++|..++...-|
T Consensus       743 ~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~r  809 (1463)
T COG5022         743 KLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYEL-KWRLFIKLQPLLSLLGSR  809 (1463)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccch-HHHhHHHhhHHhHHHhhH
Confidence            44678999999999999999988 6667777777777777775543221 133455555555554433

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues

Probab=91.92  E-value=0.14  Score=31.52  Aligned_cols=19  Identities=11%  Similarity=-0.024  Sum_probs=15.8

Q ss_pred             hhhhHHHhhhhhHHHHHHH
Q 036720           93 RGTGRFNILIQDHSVQKQT  111 (291)
Q Consensus        93 kgivrLQalvRG~lvRrQ~  111 (291)
                      +.++.||+.+||+++|+++
T Consensus         4 ~aa~~IQa~~Rg~~~r~~y   22 (26)
T smart00015        4 RAAIIIQAAWRGYLARKRY   22 (26)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            4678889999999988887

Calmodulin-binding motif.

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=89.26  E-value=0.35  Score=52.99  Aligned_cols=64  Identities=19%  Similarity=0.254  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHhhHHHHHHhhhhh---hh--------hHHHhhhhhHHHHHHHH----------------------HHHHH
Q 036720           71 RAATRIQKAFRAYRARKSIRRLR---GT--------GRFNILIQDHSVQKQTS----------------------SAINN  117 (291)
Q Consensus        71 ~AAi~IQsafRGylARr~lr~Lk---gi--------vrLQalvRG~lvRrQ~~----------------------~tl~~  117 (291)
                      .-+|+||+++|||-.|+.|+.+-   ++        -++|.-+||+..|+-+.                      ...+-
T Consensus       834 ~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r~  913 (975)
T KOG0520|consen  834 QPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTEERL  913 (975)
T ss_pred             CccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHHHHH
Confidence            45899999999999999999552   21        23578888877654331                      11222


Q ss_pred             HHHHHHHHHHHHhhhhh
Q 036720          118 IHSWCNIQTQIRNRRLC  134 (291)
Q Consensus       118 ~~a~vkIQa~vR~rr~R  134 (291)
                      -+++++||+.+|...++
T Consensus       914 ~~A~~~VQsm~rs~~a~  930 (975)
T KOG0520|consen  914 TRAVVRVQSMFRSPKAQ  930 (975)
T ss_pred             HHHHHHHHHHhcCHHHH
Confidence            35899999999988776

>PTZ00014 myosin-A; Provisional

Probab=88.07  E-value=0.69  Score=50.17  Aligned_cols=39  Identities=21%  Similarity=0.256  Sum_probs=33.2

Q ss_pred             hhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 036720           94 GTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCM  135 (291)
Q Consensus        94 givrLQalvRG~lvRrQ~~~tl~~~~a~vkIQa~vR~rr~R~  135 (291)
                      -++.||+.+||++.|+.+..   ..++++.||+.+|++..++
T Consensus       779 ~~~~iq~~~r~~~~r~~~~~---~~~~~~~iQ~~~R~~l~~~  817 (821)
T PTZ00014        779 LVSVLEALILKIKKKRKVRK---NIKSLVRIQAHLRRHLVIA  817 (821)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence            46688999999999999944   4779999999999987764

>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=82.71  E-value=1.2  Score=48.13  Aligned_cols=24  Identities=38%  Similarity=0.462  Sum_probs=21.6

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHhh
Q 036720           67 SVEERAATRIQKAFRAYRARKSIR   90 (291)
Q Consensus        67 ~~ee~AAi~IQsafRGylARr~lr   90 (291)
                      .+.+.||+.||..+|||++|+.|+
T Consensus        27 rrr~~aa~~iq~~lrsyl~Rkk~~   50 (1096)
T KOG4427|consen   27 RRREAAALFIQRVLRSYLVRKKAQ   50 (1096)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            366889999999999999999987

>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]

Probab=80.80  E-value=1.9  Score=44.18  Aligned_cols=34  Identities=38%  Similarity=0.345  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhhhhhhhHHHhh
Q 036720           68 VEERAATRIQKAFRAYRARKSIRRLRGTGRFNIL  101 (291)
Q Consensus        68 ~ee~AAi~IQsafRGylARr~lr~LkgivrLQal  101 (291)
                      +--.||+.||..||+|.||...+..-...-+|++
T Consensus        15 raikaAilIQkWYRr~~ARle~rrr~twqIFqsl   48 (631)
T KOG0377|consen   15 RAIKAAILIQKWYRRYEARLEARRRCTWQIFQSL   48 (631)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHH
Confidence            4578999999999999999987765555666655

>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]

Probab=80.27  E-value=2.4  Score=48.16  Aligned_cols=61  Identities=15%  Similarity=0.029  Sum_probs=46.7

Q ss_pred             HHHHHHhhHHHHHHhhhh--------hhhhHHHhhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhhhhh
Q 036720           75 RIQKAFRAYRARKSIRRL--------RGTGRFNILIQDHSVQKQTSSAIN----NIHSWCNIQTQIRNRRLCMVTE  138 (291)
Q Consensus        75 ~IQsafRGylARr~lr~L--------kgivrLQalvRG~lvRrQ~~~tl~----~~~a~vkIQa~vR~rr~R~~~e  138 (291)
                      +||+-.|||..|-.++..        ..++-+|+++||+++   +.....    ...-++.+|+..|+..+|..+-
T Consensus       540 ~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~---~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~  612 (1401)
T KOG2128|consen  540 RIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ---YIPRDVYLDSAKKEVVKFQSLTRGALSRKKYS  612 (1401)
T ss_pred             hhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh---hchHHHHHHHhhHHHHHHHHHHHHHHHHhhHH
Confidence            459999999999998844        357889999999997   332222    2346999999999999887663

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	291
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-04
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	7e-04
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	8e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 26/141 (18%), Positives = 43/141 (30%), Gaps = 5/141 (3%)

Query: 64  LRISVEERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDH---SVQKQTSSAINNIHS 120
            R           Q   R Y ARK+  + +        IQ +    +       +     
Sbjct: 786 ERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFX 845

Query: 121 WCNIQTQIRNRRLCMVTEGRIKHKKLENQLKLEAKLHDLEVEWHNGSETMEEILSRIQ-Q 179
              +    R     M  +     +  E Q K EA+L +LE +     E    +  ++Q +
Sbjct: 846 IXPLLKVTRQEEE-MQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAE 904

Query: 180 REEAAIKRERAMAYAFSHQWR 200
            E  A   E  +  A   Q  
Sbjct: 905 TELYAEAEEMRVRLAAKKQEL 925

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 3e-04
 Identities = 29/168 (17%), Positives = 53/168 (31%), Gaps = 61/168 (36%)

Query: 60  NPGFL--RISVEERAATRIQKAFRAYRA-----------------------RKSIRRLR- 93
           N  FL   I  E+R  + + + +   R                        R+++  LR 
Sbjct: 90  NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149

Query: 94  ----------GTGRFNIL----IQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCMVTEG 139
                     G+G+   +       + VQ +       I  W N++       +      
Sbjct: 150 AKNVLIDGVLGSGK-TWVALDVCLSYKVQCKMD---FKIF-WLNLKNCNSPETV------ 198

Query: 140 RIKHKKLENQLKLEAKLHDLEVEWHNGSETMEEILSRIQQREEAAIKR 187
                 LE   KL   L+ ++  W + S+    I  RI    +A ++R
Sbjct: 199 ------LEMLQKL---LYQIDPNWTSRSDHSSNIKLRIHS-IQAELRR 236

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 26/129 (20%), Positives = 42/129 (32%), Gaps = 11/129 (8%)

Query: 64  LRISVEERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHS---VQKQTSSAINNIHS 120
           +R      A  RIQK  R +  RK   R+R   R  I IQ +      +  ++ +    +
Sbjct: 762 IRADKLRAACIRIQKTIRGWLMRKKYMRMR---RAAITIQRYVRGHQARCYATFLRRTRA 818

Query: 121 WCNIQTQIRNRRLCMVTEGRIKHKKLENQLKLEAKLHDLEVEWHNGSETMEEILSRIQQR 180
              IQ   R   +       ++       + L+A L    V         E     IQ+ 
Sbjct: 819 AIIIQKFQR-MYVVRKRYQCMRDAT----IALQALLRGYLVRNKYQMMLREHKSIIIQKH 873

Query: 181 EEAAIKRER 189
               + R  
Sbjct: 874 VRGWLARVH 882

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 12/132 (9%), Positives = 35/132 (26%), Gaps = 10/132 (7%)

Query: 63  FLRISVEERAATRIQKAFRAYRARKSIRRLRGTGRFNI---LIQDHSVQKQTSSAINNIH 119
            L       +   +Q    A++  K   +       +    +      + +       + 
Sbjct: 780 SLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVA 839

Query: 120 SWCNIQTQIRNRRLCMVTEGRIKHKKLENQLKLEAKLHDLEVEWHNGSETMEEILSRIQQ 179
                  +I +    +    +   + L  +LK + K+  L        +    IL +++ 
Sbjct: 840 PAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLL-------QKYNRILKKLEN 892

Query: 180 REEAAIKRERAM 191
                     + 
Sbjct: 893 WATTKSVYLGSN 904

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 12/132 (9%), Positives = 34/132 (25%), Gaps = 10/132 (7%)

Query: 63  FLRISVEERAATRIQKAFRAYRARKSIRRLRGT---GRFNILIQDHSVQKQTSSAINNIH 119
            L       +   +Q    A++  K   +            +      + +       + 
Sbjct: 788 SLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVA 847

Query: 120 SWCNIQTQIRNRRLCMVTEGRIKHKKLENQLKLEAKLHDLEVEWHNGSETMEEILSRIQQ 179
                  +I +    +    +   + L  +LK + K+  L        +    IL +++ 
Sbjct: 848 PAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLL-------QKYNRILKKLEN 900

Query: 180 REEAAIKRERAM 191
                     + 
Sbjct: 901 WATTKSVYLGSN 912

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	291
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	99.1
1n2d_C	48	IQ2 and IQ3 motifs from MYO2P, A class V myosin; p	98.85
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	98.77
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	98.75
1n2d_C	48	IQ2 and IQ3 motifs from MYO2P, A class V myosin; p	98.14
2l53_B	31	CAM, voltage-gated sodium channel type V alpha iso	98.0
2kxw_B	27	Sodium channel protein type 2 subunit alpha; actio	97.92
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	97.68
1wdc_A	64	Scallop myosin; calcium binding protein, muscle pr	97.33
2bl0_A	63	Major plasmodial myosin heavy chain; muscle protei	97.25
2bl0_A	63	Major plasmodial myosin heavy chain; muscle protei	97.21
1wdc_A	64	Scallop myosin; calcium binding protein, muscle pr	97.19
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	96.92
3gn4_A	148	Myosin-VI; unconventional myosin, motility, lever	96.41
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	95.84
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	94.74
4dck_A	168	Sodium channel protein type 5 subunit alpha; IQ-mo	93.15
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	92.88
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	90.25
4anj_A	1052	Unconventional myosin-VI, green fluorescent prote;	85.77

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}

Probab=99.10  E-value=1.6e-10  Score=82.95  Aligned_cols=53  Identities=15%  Similarity=0.128  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhhhh-hhhHHHhhhhhHHHHHHHHHHHHHHHHH
Q 036720           68 VEERAATRIQKAFRAYRARKSIRRLR-GTGRFNILIQDHSVQKQTSSAINNIHSW  121 (291)
Q Consensus        68 ~ee~AAi~IQsafRGylARr~lr~Lk-givrLQalvRG~lvRrQ~~~tl~~~~a~  121 (291)
                      ..+.|||.||+.||||++|+.|..++ +++.||+.+||+++|+.+.. ++...++
T Consensus         3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~-~r~~~aA   56 (58)
T 2ix7_C            3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKF-LRRTKAA   56 (58)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCc
Confidence            45789999999999999999999886 89999999999999999954 4444443

>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}

Probab=98.85  E-value=3.4e-09  Score=73.14  Aligned_cols=41  Identities=12%  Similarity=0.230  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHhhHHHHHHhhhhh---hhhHHHhhhhhHHHHHHH
Q 036720           71 RAATRIQKAFRAYRARKSIRRLR---GTGRFNILIQDHSVQKQT  111 (291)
Q Consensus        71 ~AAi~IQsafRGylARr~lr~Lk---givrLQalvRG~lvRrQ~  111 (291)
                      .|||.||+.||||++|+.|..++   +++.||+.+||+++|+.+
T Consensus         4 ~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y   47 (48)
T 1n2d_C            4 QAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV   47 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence            58999999999999999998664   788999999999999875

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=98.77  E-value=1.1e-08  Score=109.81  Aligned_cols=71  Identities=25%  Similarity=0.201  Sum_probs=52.2

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHhhhhh-hhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 036720           67 SVEERAATRIQKAFRAYRARKSIRRLR-GTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCMVTE  138 (291)
Q Consensus        67 ~~ee~AAi~IQsafRGylARr~lr~Lk-givrLQalvRG~lvRrQ~~~tl~~~~a~vkIQa~vR~rr~R~~~e  138 (291)
                      +++..||+.||++||||++|+.|..++ +++.||+.+||+++|+++.. ++...+++.||+.+|++.+|+.+.
T Consensus       813 lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~~-lr~~~aav~IQ~~~Rg~l~R~~y~  884 (1080)
T 2dfs_A          813 LRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQM-MLREHKSIIIQKHVRGWLARVHYH  884 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTTHHHHHTT
T ss_pred             cccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355678888888888888888888664 77888888888888887743 444557777777777777776653

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=98.75  E-value=1.5e-08  Score=108.75  Aligned_cols=69  Identities=20%  Similarity=0.186  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHhhHHHHHHhhhhh-hhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 036720           70 ERAATRIQKAFRAYRARKSIRRLR-GTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCMVTEG  139 (291)
Q Consensus        70 e~AAi~IQsafRGylARr~lr~Lk-givrLQalvRG~lvRrQ~~~tl~~~~a~vkIQa~vR~rr~R~~~e~  139 (291)
                      ..||+.||++||||++|+.|..++ +++.||+.+||+++|+.+. .++...+++.||+.+|++.+|+.+..
T Consensus       768 ~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~-~lr~~~AAi~IQs~~Rg~~~Rk~y~~  837 (1080)
T 2dfs_A          768 RAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYAT-FLRRTRAAIIIQKFQRMYVVRKRYQC  837 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhccc-ccccchhHHHHHHHHhhHHHHHHHHH
Confidence            579999999999999999999775 8999999999999999985 46778899999999999999987753

>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}

Probab=98.14  E-value=3.7e-06  Score=57.68  Aligned_cols=44  Identities=7%  Similarity=0.076  Sum_probs=38.0

Q ss_pred             hhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 036720           93 RGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCMVT  137 (291)
Q Consensus        93 kgivrLQalvRG~lvRrQ~~~tl~~~~a~vkIQa~vR~rr~R~~~  137 (291)
                      ..++.||+.+||+++|+++.. ++...+++.||+.+||+.+|..+
T Consensus         4 ~a~i~iQ~~~Rg~l~R~~~~~-~~~~~aai~IQ~~~Rg~~~Rk~y   47 (48)
T 1n2d_C            4 QAIKYLQNNIKGFIIRQRVND-EMKVNCATLLQAAYRGHSIRANV   47 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHhh
Confidence            478999999999999999954 55667999999999999888653

>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}

Probab=98.00  E-value=3.6e-06  Score=54.23  Aligned_cols=24  Identities=38%  Similarity=0.483  Sum_probs=21.7

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHhh
Q 036720           67 SVEERAATRIQKAFRAYRARKSIR   90 (291)
Q Consensus        67 ~~ee~AAi~IQsafRGylARr~lr   90 (291)
                      .+||.||+.||.|||+|+.|+.+.
T Consensus         3 k~Ee~aA~vIQrA~R~yl~rr~~~   26 (31)
T 2l53_B            3 GSEEVSAMVIQRAFRRHLLQRSLK   26 (31)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhc
Confidence            478999999999999999998865

>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}

Probab=97.92  E-value=3.9e-06  Score=52.49  Aligned_cols=22  Identities=36%  Similarity=0.522  Sum_probs=19.9

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHH
Q 036720           67 SVEERAATRIQKAFRAYRARKS   88 (291)
Q Consensus        67 ~~ee~AAi~IQsafRGylARr~   88 (291)
                      .+||.||+.||.|||+||.|+.
T Consensus         3 k~Ee~aA~vIQrA~R~yl~~~~   24 (27)
T 2kxw_B            3 KQEEVSAIVIQRAYRRYLLKQK   24 (27)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            4789999999999999999865

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}

Probab=97.68  E-value=8.3e-05  Score=52.87  Aligned_cols=44  Identities=11%  Similarity=0.011  Sum_probs=37.9

Q ss_pred             hhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 036720           93 RGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCMVTEG  139 (291)
Q Consensus        93 kgivrLQalvRG~lvRrQ~~~tl~~~~a~vkIQa~vR~rr~R~~~e~  139 (291)
                      ..++.||+.+||+++|+.+..   ...+++.||+.+||+.+|..+..
T Consensus         6 ~aai~IQ~~~Rg~~~Rk~~~~---~r~aai~IQ~~~Rg~~aR~~~~~   49 (58)
T 2ix7_C            6 AACIRIQKTIRGWLLRKRYLC---MQRAAITVQRYVRGYQARCYAKF   49 (58)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999944   35699999999999999987643

>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A

Probab=97.33  E-value=0.00036  Score=50.70  Aligned_cols=39  Identities=23%  Similarity=0.320  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHhhHHHHHHhhhh----hhhhHHHhhhhhHHHHH
Q 036720           71 RAATRIQKAFRAYRARKSIRRL----RGTGRFNILIQDHSVQK  109 (291)
Q Consensus        71 ~AAi~IQsafRGylARr~lr~L----kgivrLQalvRG~lvRr  109 (291)
                      ..++.||++.|||++|+.|..+    .++..||.-+|+++.++
T Consensus         7 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~   49 (64)
T 1wdc_A            7 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR   49 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4566666666666666666643    24445555555555554

>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=97.25  E-value=0.00026  Score=51.39  Aligned_cols=42  Identities=17%  Similarity=-0.056  Sum_probs=21.2

Q ss_pred             hhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 036720           95 TGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCMV  136 (291)
Q Consensus        95 ivrLQalvRG~lvRrQ~~~tl~~~~a~vkIQa~vR~rr~R~~  136 (291)
                      ++.||+.+||+++|+.+...+....|+..||.-+|++..++.
T Consensus         7 ~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~   48 (63)
T 2bl0_A            7 VKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKN   48 (63)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            344455555555555554444444455556666665555443

>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=97.21  E-value=0.00054  Score=49.65  Aligned_cols=42  Identities=19%  Similarity=0.088  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHhhHHHHHHhhhh----hhhhHHHhhhhhHHHHHHH
Q 036720           70 ERAATRIQKAFRAYRARKSIRRL----RGTGRFNILIQDHSVQKQT  111 (291)
Q Consensus        70 e~AAi~IQsafRGylARr~lr~L----kgivrLQalvRG~lvRrQ~  111 (291)
                      ...++.||++.|||++|+.|..+    .++..||.-+|+++.++.-
T Consensus         4 ~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w   49 (63)
T 2bl0_A            4 GEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNW   49 (63)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            35689999999999999999966    3677899999999988753

>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A

Probab=97.19  E-value=0.00061  Score=49.45  Aligned_cols=46  Identities=15%  Similarity=0.066  Sum_probs=39.8

Q ss_pred             hhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 036720           93 RGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCMVTE  138 (291)
Q Consensus        93 kgivrLQalvRG~lvRrQ~~~tl~~~~a~vkIQa~vR~rr~R~~~e  138 (291)
                      .-++.||+.+||+++|+.+...+....|+..||.-+|++...+...
T Consensus         7 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w~   52 (64)
T 1wdc_A            7 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ   52 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh
Confidence            3578999999999999999988888888889999999988776543

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=96.92  E-value=0.00083  Score=70.64  Aligned_cols=41  Identities=22%  Similarity=0.282  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHhhHHHHHHhhhh----hhhhHHHhhhhhHHHHHHH
Q 036720           71 RAATRIQKAFRAYRARKSIRRL----RGTGRFNILIQDHSVQKQT  111 (291)
Q Consensus        71 ~AAi~IQsafRGylARr~lr~L----kgivrLQalvRG~lvRrQ~  111 (291)
                      .+|+.||++||||++|+.|..+    .+++.||..+||+++||..
T Consensus       780 ~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~  824 (837)
T 1kk8_A          780 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW  824 (837)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence            4688888888888888888865    3677777777777777654

>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}

Probab=96.41  E-value=0.0028  Score=54.03  Aligned_cols=35  Identities=20%  Similarity=0.387  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhh-hhhhhhHHHhhh
Q 036720           68 VEERAATRIQKAFRAYRARKSIR-RLRGTGRFNILI  102 (291)
Q Consensus        68 ~ee~AAi~IQsafRGylARr~lr-~LkgivrLQalv  102 (291)
                      -...|+|+||++.||||+|+.++ .+.|++++.++.
T Consensus        43 yR~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~   78 (148)
T 3gn4_A           43 YRAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLK   78 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            45668888888888888888888 667777776654

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=95.84  E-value=0.0062  Score=65.80  Aligned_cols=41  Identities=15%  Similarity=0.091  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHhhHHHHHHhhhh----hhhhHHHhhhhhHHHHHHH
Q 036720           71 RAATRIQKAFRAYRARKSIRRL----RGTGRFNILIQDHSVQKQT  111 (291)
Q Consensus        71 ~AAi~IQsafRGylARr~lr~L----kgivrLQalvRG~lvRrQ~  111 (291)
                      .+|+.||++||||++|+.|..+    .+++.||+.+||++.|+.+
T Consensus       793 ~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~  837 (1184)
T 1i84_S          793 DVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW  837 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            5899999999999999999966    4799999999999999763

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=94.74  E-value=0.047  Score=57.50  Aligned_cols=45  Identities=16%  Similarity=0.048  Sum_probs=39.0

Q ss_pred             hhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 036720           94 GTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCMVTE  138 (291)
Q Consensus        94 givrLQalvRG~lvRrQ~~~tl~~~~a~vkIQa~vR~rr~R~~~e  138 (291)
                      .++.||+.+||+++|+.+...+....+++.||+.+|++..++.+.
T Consensus       781 ~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~  825 (837)
T 1kk8_A          781 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ  825 (837)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchH
Confidence            578899999999999999776666789999999999998887653

>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A

Probab=93.15  E-value=0.066  Score=46.38  Aligned_cols=29  Identities=38%  Similarity=0.439  Sum_probs=24.4

Q ss_pred             cchhhHHHHHHHHHHHHHhhHHHHHHhhh
Q 036720           63 FLRISVEERAATRIQKAFRAYRARKSIRR   91 (291)
Q Consensus        63 ~~~~~~ee~AAi~IQsafRGylARr~lr~   91 (291)
                      ......++.||+.||.|||.|+.|+.+..
T Consensus       123 t~~~~~e~~aA~~IQra~R~~~~r~~~~~  151 (168)
T 4dck_A          123 TLRRKHEEVSAMVIQRAFRRHLLQRSLKH  151 (168)
T ss_dssp             EHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            34567889999999999999999887664

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=92.88  E-value=0.16  Score=54.97  Aligned_cols=45  Identities=13%  Similarity=-0.040  Sum_probs=38.8

Q ss_pred             hhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 036720           93 RGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCMVT  137 (291)
Q Consensus        93 kgivrLQalvRG~lvRrQ~~~tl~~~~a~vkIQa~vR~rr~R~~~  137 (291)
                      ..++.||+.+||+++|+.+...+....+++.||+.+|++..++.+
T Consensus       793 ~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~  837 (1184)
T 1i84_S          793 DVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW  837 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            357889999999999999987666678999999999999887654

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A

Probab=90.25  E-value=0.18  Score=52.79  Aligned_cols=25  Identities=40%  Similarity=0.554  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHhhHHHHHHhhhhhh
Q 036720           70 ERAATRIQKAFRAYRARKSIRRLRG   94 (291)
Q Consensus        70 e~AAi~IQsafRGylARr~lr~Lkg   94 (291)
                      ..+|+.||++||||++|+.|..++.
T Consensus       768 ~~~~~~iQ~~~Rg~l~R~~~~~~r~  792 (795)
T 1w7j_A          768 RAACIRIQKTIRGWLMRKKYMRMRR  792 (795)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3589999999999999999998764

>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}

Probab=85.77  E-value=1.1  Score=48.47  Aligned_cols=41  Identities=5%  Similarity=0.069  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHhhHHHHHHhhhhh-hhhHHHhhhhhHHHHHHH
Q 036720           70 ERAATRIQKAFRAYRARKSIRRLR-GTGRFNILIQDHSVQKQT  111 (291)
Q Consensus        70 e~AAi~IQsafRGylARr~lr~Lk-givrLQalvRG~lvRrQ~  111 (291)
                      ..+|+.||. +|||++|+.|+.++ +++.+|.+-|+...|+..
T Consensus       775 ~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~~  816 (1052)
T 4anj_A          775 DHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAEA  816 (1052)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            457777775 69999999999776 778888887887766554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	291
d1kk8a2	789	c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain	0.004

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

 Score = 36.2 bits (83), Expect = 0.004
 Identities = 9/42 (21%), Positives = 18/42 (42%)

Query: 64  LRISVEERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDH 105
           +R     +  +  Q   R Y  RK+ ++L+       +IQ +
Sbjct: 725 MRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRN 766

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	291
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	97.33
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	97.17
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	95.74
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	94.49
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	92.13

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=97.33  E-value=6.7e-05  Score=75.72  Aligned_cols=42  Identities=21%  Similarity=0.308  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHhhHHHHHHhhhhh----hhhHHHhhhhhHHHHHHH
Q 036720           70 ERAATRIQKAFRAYRARKSIRRLR----GTGRFNILIQDHSVQKQT  111 (291)
Q Consensus        70 e~AAi~IQsafRGylARr~lr~Lk----givrLQalvRG~lvRrQ~  111 (291)
                      ..+|+.||+.||||++|+.|+.++    +++.||..+||+++||.+
T Consensus       731 ~~~~~~IQ~~~R~~~~Rk~y~k~r~~~~ai~~iQ~~~R~~~~rr~~  776 (789)
T d1kk8a2         731 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW  776 (789)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            568999999999999999999775    577888888888888776

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=97.17  E-value=0.00014  Score=73.29  Aligned_cols=42  Identities=14%  Similarity=0.077  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHhhHHHHHHhhhh----hhhhHHHhhhhhHHHHHHH
Q 036720           70 ERAATRIQKAFRAYRARKSIRRL----RGTGRFNILIQDHSVQKQT  111 (291)
Q Consensus        70 e~AAi~IQsafRGylARr~lr~L----kgivrLQalvRG~lvRrQ~  111 (291)
                      ..+|+.||+.||||++|+.|+.+    .+++.||+.+||+++||.+
T Consensus       735 ~~~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~~~~r~~  780 (794)
T d2mysa2         735 AEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKHW  780 (794)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            46899999999999999999855    3688888888888888775

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=95.74  E-value=0.007  Score=60.68  Aligned_cols=45  Identities=9%  Similarity=-0.084  Sum_probs=39.7

Q ss_pred             hhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 036720           93 RGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCMVT  137 (291)
Q Consensus        93 kgivrLQalvRG~lvRrQ~~~tl~~~~a~vkIQa~vR~rr~R~~~  137 (291)
                      +.++.||+.+||+++|+++...+....+++.||+.+|++..|+.+
T Consensus       736 ~~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~~~~r~~  780 (794)
T d2mysa2         736 EIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKHW  780 (794)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            467899999999999999987667778999999999999888765

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=94.49  E-value=0.027  Score=56.29  Aligned_cols=45  Identities=16%  Similarity=0.055  Sum_probs=37.4

Q ss_pred             hhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 036720           93 RGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCMVT  137 (291)
Q Consensus        93 kgivrLQalvRG~lvRrQ~~~tl~~~~a~vkIQa~vR~rr~R~~~  137 (291)
                      +.++.||+.+||+++|+++........+++.||+.+|++.+|+.+
T Consensus       732 ~~~~~IQ~~~R~~~~Rk~y~k~r~~~~ai~~iQ~~~R~~~~rr~~  776 (789)
T d1kk8a2         732 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW  776 (789)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            357889999999999999965444455889999999999988765

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=92.13  E-value=0.043  Score=54.07  Aligned_cols=25  Identities=40%  Similarity=0.530  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhhhh
Q 036720           69 EERAATRIQKAFRAYRARKSIRRLR   93 (291)
Q Consensus        69 ee~AAi~IQsafRGylARr~lr~Lk   93 (291)
                      ...+||.||+.||||++||.|..+|
T Consensus       705 l~~~~~~iQ~~~R~~l~Rk~~~r~r  729 (730)
T d1w7ja2         705 LRAACIRIQKTIRGWLMRKKYMRMR  729 (730)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3458999999999999999988664