Citrus Sinensis ID: 036736

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
Protein Sequence
MKKREKKNIIVLTHQAPKSLTLTPKHSSLFHDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPDGPQCSDKLGLSLDLGSFIVGVMISTTDFAKHTLDQEACRSLCKFQFSFRVLSEDDIVAGIFTGSLARNLIVGVLALIFGIFVG
Secondary Structure (PSIPRED)
cHHHHHHcEEEEEEccccccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccHHHHHHHHccccccccccccHHcHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEccccccccccccccccccHHHHHHHHEEEEccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccccccccEEEHHHHHHHHEEEcccHHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MKKREKKNIIVLthqapksltltpkhsslfhdQTLEINLAlnrssktpsfrhhsSILWITLLLTHEFNIADNLHIWdtllsdpdgpqcsdklglsldLGSFIVGVMISTTDFAKHTLDQEACRSLCKFQfsfrvlseddivagiFTGSLARNLIVGVLALIFGIFVG
Flexible Loop (DISEMBL)
mkkrekkniivlthqapksltltpkHSSLFHDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPDGPQCSDKLGLSLDLGSFIVGVMISTTDFAKHTLDQEACRSLCKFQFSFRVLSEDDIVAGIFTGSLARNLIVGVLALIFGIFVG
Low Complexity Region (SEG)
MKKREKKNIIVLTHQAPKSLTLTPKHSSLFHDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPDGPQCsdklglsldlgsFIVGVMISTTDFAKHTLDQEACRSLCKFQFSFRVLSEDDIVAGIFTGSLARNLIVGVLALIFGIFVG
Disordered region (IsUnstruct)
********IIVLT***************LFHDQTLEINLAL********FRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPDGPQCSDKLGLSLDLGSFIVGVMISTTDFAKHTLDQEACRSLCKFQFSFRVLSEDDIVAGIFTGSLARNLIVGVLALIFGIFV*
Disordered Region (DISOPRED)
**************QAPK***LTPKHSSLFHDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPDGPQCSDKLGLSLDLGSFIVGVMISTTDFAKHTLDQEACRSLCKFQFSFRVLSEDDIVAGIFTGSLARNLIVGVLALIFGIFVG
Disordered Region (DISEMBL)
MKKREKKNIIVLTHQAPKSLTLTPKHSSLFHDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPDGPQCSDKLGLSLDLGSFIVGVMISTTDFAKHTLDQEACRSLCKFQFSFRVLSEDDIVAGIFTGSLARNLIVGVLALIFGIFVG
Disordered Region (DISPRO)
*****KKNIIVLTHQAPKSLTLTPKHSSLFHDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPDGPQCSDKLGLSLDLGSFIVGVMISTTDFAKHTLDQEACRSLCKFQFSFRVLSEDDIVAGIFTGSLARNLIVGVLALIFGIFVG
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKKREKKNIIVLTHQAPKSLTLTPKHSSLFHDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPDGPQCSDKLGLSLDLGSFIVGVMISTTDFAKHTLDQEACRSLCKFQFSFRVLSEDDIVAGIFTGSLARNLIVGVLALIFGIFVG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	167	2.2.26 [Sep-21-2011]
Q8VYR9	568	K(+) efflux antiporter 5	yes	no	0.227	0.066	0.717	6e-09
B5X0N6	597	K(+) efflux antiporter 6	no	no	0.227	0.063	0.743	2e-08
Q9ZUN3	592	K(+) efflux antiporter 4	no	no	0.191	0.054	0.812	4e-08

>sp|Q8VYR9|KEA5_ARATH K(+) efflux antiporter 5 OS=Arabidopsis thaliana GN=KEA5 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/39 (71%), Positives = 35/39 (89%), Gaps = 1/39 (2%)

Query: 88  CSDKLGLSLDLGSFIVGVMISTTDFAKHTLDQ-EACRSL 125
           CSDKLGLSL+LGSF+ GVM+STT+FA+HTL+Q E  R+L
Sbjct: 385 CSDKLGLSLELGSFVAGVMLSTTEFAQHTLEQVEPIRNL 423

May operate as a K(+)/H(+) antiporter.
Arabidopsis thaliana (taxid: 3702)

>sp|B5X0N6|KEA6_ARATH K(+) efflux antiporter 6 OS=Arabidopsis thaliana GN=KEA6 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/39 (74%), Positives = 33/39 (84%), Gaps = 1/39 (2%)

Query: 88  CSDKLGLSLDLGSFIVGVMISTTDFAKHTLDQ-EACRSL 125
           CSDKLGLSL+LGSF  GVMISTTD A+HTL+Q E  R+L
Sbjct: 408 CSDKLGLSLELGSFAAGVMISTTDLAEHTLEQIEPIRNL 446

May operate as a K(+)/H(+) antiporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUN3|KEA4_ARATH K(+) efflux antiporter 4 OS=Arabidopsis thaliana GN=KEA4 PE=2 SV=2

 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/32 (81%), Positives = 29/32 (90%)

Query: 88  CSDKLGLSLDLGSFIVGVMISTTDFAKHTLDQ 119
           CSDKLGLSL+LGSF  GVMISTTD A+HTL+Q
Sbjct: 400 CSDKLGLSLELGSFAAGVMISTTDLAQHTLEQ 431

May operate as a K(+)/H(+) antiporter.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
356512467	443	PREDICTED: TBC1 domain family member 13-	0.317	0.119	0.596	7e-09
356512469	429	PREDICTED: TBC1 domain family member 13-	0.317	0.123	0.596	7e-09
356528306	449	PREDICTED: TBC1 domain family member 13-	0.317	0.118	0.596	1e-08
255539661	565	Glutathione-regulated potassium-efflux s	0.227	0.067	0.794	2e-08
20804889	426	P0497A05.14 [Oryza sativa Japonica Group	0.281	0.110	0.581	2e-08
225455594	577	PREDICTED: K(+) efflux antiporter 5 [Vit	0.227	0.065	0.794	2e-08
115441721	368	Os01g0908100 [Oryza sativa Japonica Grou	0.281	0.127	0.581	3e-08
218189570	368	hypothetical protein OsI_04852 [Oryza sa	0.269	0.122	0.603	3e-08
356561749	576	PREDICTED: K(+) efflux antiporter 5-like	0.227	0.065	0.794	4e-08
224128968	339	predicted protein [Populus trichocarpa]	0.317	0.156	0.561	4e-08

>gi|356512467|ref|XP_003524940.1| PREDICTED: TBC1 domain family member 13-like isoform 1 [Glycine max]

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 39/57 (68%), Gaps = 4/57 (7%)

Query: 31  HDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPDGPQ 87
           HD+ L  +L +  S   P F    +  WITLLLT EFN AD+LHIWDTLLSDPDGPQ
Sbjct: 338 HDEELWRHLEVT-SKVNPQF---YAFRWITLLLTQEFNFADSLHIWDTLLSDPDGPQ 390

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512469|ref|XP_003524941.1| PREDICTED: TBC1 domain family member 13-like isoform 2 [Glycine max]

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 39/57 (68%), Gaps = 4/57 (7%)

Query: 31  HDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPDGPQ 87
           HD+ L  +L +  S   P F    +  WITLLLT EFN AD+LHIWDTLLSDPDGPQ
Sbjct: 324 HDEELWRHLEVT-SKVNPQF---YAFRWITLLLTQEFNFADSLHIWDTLLSDPDGPQ 376

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528306|ref|XP_003532745.1| PREDICTED: TBC1 domain family member 13-like [Glycine max]

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 39/57 (68%), Gaps = 4/57 (7%)

Query: 31  HDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPDGPQ 87
           HD+ L  +L +  S   P F    +  WITLLLT EFN AD+LHIWDTLLSDPDGPQ
Sbjct: 344 HDEELWRHLEVT-SKVNPQF---YAFRWITLLLTQEFNFADSLHIWDTLLSDPDGPQ 396

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539661|ref|XP_002510895.1| Glutathione-regulated potassium-efflux system protein kefB, putative [Ricinus communis] gi|223550010|gb|EEF51497.1| Glutathione-regulated potassium-efflux system protein kefB, putative [Ricinus communis]

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/39 (79%), Positives = 35/39 (89%), Gaps = 1/39 (2%)

Query: 88  CSDKLGLSLDLGSFIVGVMISTTDFAKHTLDQ-EACRSL 125
           CSDKLGLSL+LGSF+ GVMISTTDFA+HTLDQ E  R+L
Sbjct: 390 CSDKLGLSLELGSFVAGVMISTTDFAQHTLDQVEPIRNL 428

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20804889|dbj|BAB92570.1| P0497A05.14 [Oryza sativa Japonica Group]

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 36/55 (65%), Gaps = 8/55 (14%)

Query: 33  QTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPDGPQ 87
           + LEI   +N     P F    +  WITLLLT EFN AD +HIWDTLLSDPDGPQ
Sbjct: 268 RYLEITTEIN-----PQF---YAFRWITLLLTQEFNFADTIHIWDTLLSDPDGPQ 314

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455594|ref|XP_002269354.1| PREDICTED: K(+) efflux antiporter 5 [Vitis vinifera] gi|296084106|emb|CBI24494.3| unnamed protein product [Vitis vinifera]

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/39 (79%), Positives = 35/39 (89%), Gaps = 1/39 (2%)

Query: 88  CSDKLGLSLDLGSFIVGVMISTTDFAKHTLDQ-EACRSL 125
           CSDKLGLSL+LGSF+ GVMISTTDFA+HTLDQ E  R+L
Sbjct: 397 CSDKLGLSLELGSFVAGVMISTTDFAQHTLDQVEPIRNL 435

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115441721|ref|NP_001045140.1| Os01g0908100 [Oryza sativa Japonica Group] gi|56785115|dbj|BAD82753.1| RabGAP/TBC domain-containing protein-like [Oryza sativa Japonica Group] gi|56785363|dbj|BAD82321.1| RabGAP/TBC domain-containing protein-like [Oryza sativa Japonica Group] gi|113534671|dbj|BAF07054.1| Os01g0908100 [Oryza sativa Japonica Group] gi|215701486|dbj|BAG92910.1| unnamed protein product [Oryza sativa Japonica Group] gi|222619721|gb|EEE55853.1| hypothetical protein OsJ_04475 [Oryza sativa Japonica Group]

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 36/55 (65%), Gaps = 8/55 (14%)

Query: 33  QTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPDGPQ 87
           + LEI   +N     P F    +  WITLLLT EFN AD +HIWDTLLSDPDGPQ
Sbjct: 273 RYLEITTEIN-----PQF---YAFRWITLLLTQEFNFADTIHIWDTLLSDPDGPQ 319

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218189570|gb|EEC71997.1| hypothetical protein OsI_04852 [Oryza sativa Indica Group]

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 35/53 (66%), Gaps = 8/53 (15%)

Query: 35  LEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPDGPQ 87
           LEI   +N     P F    +  WITLLLT EFN AD +HIWDTLLSDPDGPQ
Sbjct: 275 LEITTEIN-----PQF---YAFRWITLLLTQEFNFADTIHIWDTLLSDPDGPQ 319

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561749|ref|XP_003549141.1| PREDICTED: K(+) efflux antiporter 5-like [Glycine max]

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/39 (79%), Positives = 35/39 (89%), Gaps = 1/39 (2%)

Query: 88  CSDKLGLSLDLGSFIVGVMISTTDFAKHTLDQ-EACRSL 125
           CSDKLGLSL+LGSF+ GVMISTTDFA+HTLDQ E  R+L
Sbjct: 397 CSDKLGLSLELGSFMAGVMISTTDFAQHTLDQVEPIRNL 435

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128968|ref|XP_002328857.1| predicted protein [Populus trichocarpa] gi|222839287|gb|EEE77624.1| predicted protein [Populus trichocarpa]

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 39/57 (68%), Gaps = 4/57 (7%)

Query: 31  HDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPDGPQ 87
           HD+ L  +L +  +   P F    S  WITLLLT EFN AD++HIWDTLLSDP+GPQ
Sbjct: 233 HDEELWRHLEVT-TKVNPQF---YSFRWITLLLTQEFNFADSIHIWDTLLSDPEGPQ 285

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
TAIR|locus:2119435	449	AT4G13730 [Arabidopsis thalian	0.359	0.133	0.5	1.5e-09
DICTYBASE|DDB_G0269052	604	DDB_G0269052 [Dictyostelium di	0.341	0.094	0.4	0.00091

TAIR|locus:2119435 AT4G13730 [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 34/68 (50%), Positives = 43/68 (63%)

Query:    20 LTLTPKHSSLFHDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTL 79
             L+L  KH    HD+ L  +L +  +   P F    +  WITLLLT EFN  ++LHIWDTL
Sbjct:   339 LSLLLKH----HDEELWRHLEVT-TKINPQFY---AFRWITLLLTQEFNFVESLHIWDTL 390

Query:    80 LSDPDGPQ 87
             LSDP+GPQ
Sbjct:   391 LSDPEGPQ 398

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

DICTYBASE|DDB_G0269052 DDB_G0269052 [Dictyostelium discoideum (taxid:44689)]

 Score = 105 (42.0 bits), Expect = 0.00091, P = 0.00091
 Identities = 24/60 (40%), Positives = 31/60 (51%)

Query:    25 KHSSLFHDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPD 84
             K + +  D  LE+   L      P F    S  WITLLL+ EF + D L +WD L SDP+
Sbjct:   229 KLNRILKDNDLELWTDLEDKKLNPQFY---SFRWITLLLSQEFELPDVLRLWDALFSDPN 285


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.138   0.416    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      167       155   0.00096  105 3  11 22  0.42    31
                                                     30  0.41    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  594 (63 KB)
  Total size of DFA:  146 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.32u 0.12s 13.44t   Elapsed:  00:00:01
  Total cpu time:  13.32u 0.12s 13.44t   Elapsed:  00:00:01
  Start:  Fri May 10 04:07:14 2013   End:  Fri May 10 04:07:15 2013

GO:0032851 "positive regulation of Rab GTPase activity" evidence=IEA

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	167
PRK03562	621	glutathione-regulated potassium-efflux system prot	99.49
PRK03659	601	glutathione-regulated potassium-efflux system prot	99.44
KOG4567	370	consensus GTPase-activating protein [General funct	99.41
COG0475	397	KefB Kef-type K+ transport systems, membrane compo	99.39
COG4651	408	RosB Kef-type K+ transport system, predicted NAD-b	99.3
KOG1092	484	consensus Ypt/Rab-specific GTPase-activating prote	99.16
PRK10669	558	putative cation:proton antiport protein; Provision	98.78
KOG1091	625	consensus Ypt/Rab-specific GTPase-activating prote	98.48
PLN03159	832	cation/H(+) antiporter 15; Provisional	98.14
smart00164	199	TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R	97.91
TIGR00932	273	2a37 transporter, monovalent cation:proton antipor	97.43
PF00566	214	RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00	97.27
COG5210	496	GTPase-activating protein [General function predic	97.1
PF00999	380	Na_H_Exchanger: Sodium/hydrogen exchanger family;	96.67
PRK05326	562	potassium/proton antiporter; Reviewed	96.56
KOG1093	725	consensus Predicted protein kinase (contains TBC a	94.34
KOG3636	669	consensus Uncharacterized conserved protein, conta	87.87
KOG2058	436	consensus Ypt/Rab GTPase activating protein [Intra	82.58
KOG2224	781	consensus Uncharacterized conserved protein, conta	82.42

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=99.49  E-value=4.1e-14  Score=131.84  Aligned_cols=103  Identities=20%  Similarity=0.262  Sum_probs=88.9

Q ss_pred             hHHHHHHHhccchhhhhHHHHHHhhhcCCCCCccccccCCchhhHHHHHHHHhcccchhhhhhhh--hhhHhHHHHHhhh
Q 036736           55 SILWITLLLTHEFNIADNLHIWDTLLSDPDGPQCSDKLGLSLDLGSFIVGVMISTTDFAKHTLDQ--EACRSLCKFQFSF  132 (167)
Q Consensus        55 aFRWI~LL~srEF~lad~LrIWD~lls~~~~a~l~~~lGLS~aLGAFiAGvmLs~s~~s~h~le~--eP~r~lfl~lFF~  132 (167)
                      -+||+....++|.++..++.+.      ....++++.+|+|+++|||+||+++++++| +|++|+  +|||++|+++||+
T Consensus       207 l~~~~~~~~~~e~~~~~~l~lv------~~~a~la~~~Gls~~lGAFlAGl~l~~~~~-~~~le~~i~pf~~lll~lFFi  279 (621)
T PRK03562        207 ALRFVARSGLREVFTAVALFLV------FGFGLLMEEVGLSMALGAFLAGVLLASSEY-RHALESDIEPFKGLLLGLFFI  279 (621)
T ss_pred             HHHHHHHhCCchHHHHHHHHHH------HHHHHHHHHhCccHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHHHHHHHHH
Confidence            4678888888999988888777      667789999999999999999999999999 667777  9999999999999


Q ss_pred             hhhc----------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036736          133 RVLS----------EDDIVAGIFTGSLARNLIVGVLALIFGI  164 (167)
Q Consensus       133 ~~~~----------~~~~~~~v~~~~~~k~lv~~~l~~~~g~  164 (167)
                      ++-+          |++++.-+++.++.|.+++++.++.+|.
T Consensus       280 ~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~~~g~  321 (621)
T PRK03562        280 AVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLARPLGV  321 (621)
T ss_pred             HhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            8655          4455666777889999999999999885

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=99.44  E-value=1.9e-13  Score=126.71  Aligned_cols=103  Identities=24%  Similarity=0.343  Sum_probs=87.8

Q ss_pred             hHHHHHHHhccchhhhhHHHHHHhhhcCCCCCccccccCCchhhHHHHHHHHhcccchhhhhhhh--hhhHhHHHHHhhh
Q 036736           55 SILWITLLLTHEFNIADNLHIWDTLLSDPDGPQCSDKLGLSLDLGSFIVGVMISTTDFAKHTLDQ--EACRSLCKFQFSF  132 (167)
Q Consensus        55 aFRWI~LL~srEF~lad~LrIWD~lls~~~~a~l~~~lGLS~aLGAFiAGvmLs~s~~s~h~le~--eP~r~lfl~lFF~  132 (167)
                      .+||+....++|..+..++.+.      ....++++.+|+|+++|||+||++++++++ +|++|+  +||||+|+++||+
T Consensus       204 ~~~~~~~~~~~e~~~~~~l~~v------l~~a~l~~~~Gls~~LGAFlaGl~l~~s~~-~~~l~~~i~pf~~lll~lFFi  276 (601)
T PRK03659        204 LFRFIAASGVREVFTAAALLLV------LGSALFMDALGLSMALGTFIAGVLLAESEY-RHELEIAIEPFKGLLLGLFFI  276 (601)
T ss_pred             HHHHHHHcCCchHHHHHHHHHH------HHHHHHHHHhCccHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHHHHHHHHH
Confidence            4577777788899988888776      666788999999999999999999999999 567776  9999999999999


Q ss_pred             hhhc----------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036736          133 RVLS----------EDDIVAGIFTGSLARNLIVGVLALIFGI  164 (167)
Q Consensus       133 ~~~~----------~~~~~~~v~~~~~~k~lv~~~l~~~~g~  164 (167)
                      ++-+          |++++..++++++.|.+++++.++.+|.
T Consensus       277 ~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~~~~~~~g~  318 (601)
T PRK03659        277 SVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLYLLARLYGL  318 (601)
T ss_pred             HHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            8655          4555666777889999999999998874

>KOG4567 consensus GTPase-activating protein [General function prediction only]

Probab=99.41  E-value=8.9e-14  Score=123.89  Aligned_cols=58  Identities=38%  Similarity=0.714  Sum_probs=47.2

Q ss_pred             ccCcchhhhhHHHHHhcccCCCCCcccccchHHHHHHHhccchhhhhHHHHHHhhhcCCCC
Q 036736           25 KHSSLFHDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPDG   85 (167)
Q Consensus        25 ~~~~~~~~~~le~~~~l~~~~i~p~~y~~~aFRWI~LL~srEF~lad~LrIWD~lls~~~~   85 (167)
                      |.+++++..|.|+|.++++++|+||||   +|||++++++|||++||++++||+++||...
T Consensus       253 r~~~~lk~~D~EL~~~L~~~~i~Pqfy---aFRWitLLLsQEF~lpDvi~lWDsl~sD~~r  310 (370)
T KOG4567|consen  253 RLSELLKKHDEELWRHLEEKEIHPQFY---AFRWITLLLSQEFPLPDVIRLWDSLLSDPQR  310 (370)
T ss_pred             HHHHHHHHhhHHHHHHHHhcCCCccch---hHHHHHHHHhccCCchhHHHHHHHHhcChhh
Confidence            444455555555555555666669999   9999999999999999999999999999886

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=99.39  E-value=4.5e-13  Score=119.00  Aligned_cols=105  Identities=23%  Similarity=0.229  Sum_probs=94.6

Q ss_pred             cchHHHHHHHhccchhhhhHHHHHHhhhcCCCCCccccccCCchhhHHHHHHHHhcccchhhhhhhh--hhhHh-HHHHH
Q 036736           53 HSSILWITLLLTHEFNIADNLHIWDTLLSDPDGPQCSDKLGLSLDLGSFIVGVMISTTDFAKHTLDQ--EACRS-LCKFQ  129 (167)
Q Consensus        53 ~~aFRWI~LL~srEF~lad~LrIWD~lls~~~~a~l~~~lGLS~aLGAFiAGvmLs~s~~s~h~le~--eP~r~-lfl~l  129 (167)
                      ++-+||++....+|..+..++.+.      ...+++++..|+|+++|||+||+++|++++++|++|+  +|+|+ +|..+
T Consensus       208 ~~~~r~~~~~~~~e~~~~~~l~i~------l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fipl  281 (397)
T COG0475         208 PPLFRRVAKTESSELFILFVLLLV------LGAAYLAELLGLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPL  281 (397)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHH------HHHHHHHHHhChhHHHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHH
Confidence            456899999999999999999999      8889999999999999999999999999997567777  99999 99999


Q ss_pred             hhhhhhc----------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036736          130 FSFRVLS----------EDDIVAGIFTGSLARNLIVGVLALIFG  163 (167)
Q Consensus       130 FF~~~~~----------~~~~~~~v~~~~~~k~lv~~~l~~~~g  163 (167)
                      ||+++-+          +.+++.-+.+..+.|..+.+..+|.+|
T Consensus       282 FFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~~~~~~~~~~~g  325 (397)
T COG0475         282 FFISVGMSLDLGVLLENLLLILLLVALAILGKILGAYLAARLLG  325 (397)
T ss_pred             HHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            9998866          555677888889999999999999998

>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]

Probab=99.30  E-value=6.5e-12  Score=112.54  Aligned_cols=103  Identities=15%  Similarity=0.209  Sum_probs=88.6

Q ss_pred             HHHHHHHhccchhhhhHHHHHHhhhcCCCCCc-cccccCCchhhHHHHHHHHhcccchhhhhhhh-hhhHhHHHHHhhhh
Q 036736           56 ILWITLLLTHEFNIADNLHIWDTLLSDPDGPQ-CSDKLGLSLDLGSFIVGVMISTTDFAKHTLDQ-EACRSLCKFQFSFR  133 (167)
Q Consensus        56 FRWI~LL~srEF~lad~LrIWD~lls~~~~a~-l~~~lGLS~aLGAFiAGvmLs~s~~s~h~le~-eP~r~lfl~lFF~~  133 (167)
                      +..+....+||.+.-.++-+=      .+.++ .++.+|.|.++|||+|||++++||.|+...|+ .|+||.|+++||++
T Consensus       215 le~~a~tGsrElf~L~vla~A------LgVa~Ga~~LfgvsfaLGAffaGMvL~eselshraa~~slpLrdaFaVlFFvs  288 (408)
T COG4651         215 LERVAATGSRELFTLAVLAIA------LGVAFGAAELFGVSFALGAFFAGMVLAESELSHRAAEDSLPLRDAFAVLFFVS  288 (408)
T ss_pred             HHHHHHcCcHHHHHHHHHHHH------HHHhhccceeeccchhHHHHHHHHHhcchhhhHHHHHhccCHHHHHHHHHHHH
Confidence            366778899999987777655      34333 45778999999999999999999999999998 99999999999999


Q ss_pred             hhc----------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036736          134 VLS----------EDDIVAGIFTGSLARNLIVGVLALIFGI  164 (167)
Q Consensus       134 ~~~----------~~~~~~~v~~~~~~k~lv~~~l~~~~g~  164 (167)
                      +-+          |+.+.+...+++..|++.-|..+|.||-
T Consensus       289 VGmlf~P~~l~~~pl~vlatllii~~gKs~aaf~ivr~Fg~  329 (408)
T COG4651         289 VGMLFDPMILIQQPLAVLATLLIILFGKSVAAFFIVRAFGH  329 (408)
T ss_pred             hhhhcCcHHhhcchHHHHHHHHHHHhhhHHHHHHHHHHhCC
Confidence            877          5667788889999999999999999985

>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.16  E-value=1.4e-11  Score=113.17  Aligned_cols=95  Identities=21%  Similarity=0.415  Sum_probs=78.2

Q ss_pred             hhhHHHHHhcccCCCCCcccccchHHHHHHHhccchhhhhHHHHHHhhhcCCCCC------cccccc-CCchhhHH-HHH
Q 036736           32 DQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPDGP------QCSDKL-GLSLDLGS-FIV  103 (167)
Q Consensus        32 ~~~le~~~~l~~~~i~p~~y~~~aFRWI~LL~srEF~lad~LrIWD~lls~~~~a------~l~~~l-GLS~aLGA-FiA  103 (167)
                      -+|++ ..++|        |++|||||++||+.|||++..+||+||||+|+.++.      .|++.+ .-|.+|-- .+.
T Consensus       373 hkHlq-~~gve--------ylQFAFRWmNcLLmRE~pl~~~iRlWDTY~aE~dgf~~FhvYvcAAFL~kW~~eL~e~DFQ  443 (484)
T KOG1092|consen  373 HKHLQ-EHGVE--------YLQFAFRWMNCLLMREFPLRCTIRLWDTYLAEPDGFNEFHVYVCAAFLLKWSSELMENDFQ  443 (484)
T ss_pred             HHHHH-HhchH--------HHHHHHHHHHHHHHhhccchhHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            38999 59999        999999999999999999999999999999998763      344433 23555544 788


Q ss_pred             HHHhcccchhhhhhhhhhhHhHHHHHhhhhhh
Q 036736          104 GVMISTTDFAKHTLDQEACRSLCKFQFSFRVL  135 (167)
Q Consensus       104 GvmLs~s~~s~h~le~eP~r~lfl~lFF~~~~  135 (167)
                      |+++--++.+.|.|+++-+.-++.-.|+.--.
T Consensus       444 ~~ilfLQnlPT~~W~d~eIellLseA~~~k~~  475 (484)
T KOG1092|consen  444 ELILFLQNLPTHNWSDREIELLLSEAFRLKSV  475 (484)
T ss_pred             HHHHHHhcCCCCCccHHHHHHHHHHHHHHHHH
Confidence            99999999999999998888888888865433

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=98.78  E-value=1.5e-08  Score=92.57  Aligned_cols=76  Identities=17%  Similarity=0.287  Sum_probs=61.4

Q ss_pred             ccccCCchhhHHHHHHHHhcccchhhhhhhh-hhhHhHHHHHhhhhhhc----------HHHHHHHHHHHHHHHHHHHHH
Q 036736           89 SDKLGLSLDLGSFIVGVMISTTDFAKHTLDQ-EACRSLCKFQFSFRVLS----------EDDIVAGIFTGSLARNLIVGV  157 (167)
Q Consensus        89 ~~~lGLS~aLGAFiAGvmLs~s~~s~h~le~-eP~r~lfl~lFF~~~~~----------~~~~~~~v~~~~~~k~lv~~~  157 (167)
                      ++.+|+|+.+|||+||++++++++++...++ .|++++|+.+||+.+-+          +..++.-+++.++.|.+..+.
T Consensus       243 ~~~lGls~~lGAflaGl~l~~~~~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~~~~  322 (558)
T PRK10669        243 VELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLAAFF  322 (558)
T ss_pred             HHHcCccHHHHHHHHHHHHhCChhHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999995544445 99999999999987655          223344556677889999999


Q ss_pred             HHHHHhh
Q 036736          158 LALIFGI  164 (167)
Q Consensus       158 l~~~~g~  164 (167)
                      .++.+|.
T Consensus       323 ~~~~~g~  329 (558)
T PRK10669        323 LVRLFGH  329 (558)
T ss_pred             HHHHhCC
Confidence            9988874

>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=8.7e-08  Score=90.71  Aligned_cols=63  Identities=25%  Similarity=0.479  Sum_probs=48.0

Q ss_pred             HhcccCCCCCcccccchHHHHHHHhccchhhhhHHHHHH-hhhcCCCCCccccccCCchhhHHHHHHHHhcccchhhhhh
Q 036736           39 LALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWD-TLLSDPDGPQCSDKLGLSLDLGSFIVGVMISTTDFAKHTL  117 (167)
Q Consensus        39 ~~l~~~~i~p~~y~~~aFRWI~LL~srEF~lad~LrIWD-~lls~~~~a~l~~~lGLS~aLGAFiAGvmLs~s~~s~h~l  117 (167)
                      ..+.+.+|.||+|   +.||+++||.|||++.|.|.+|| .++.             +...|++++||.+|--=|=|+.+
T Consensus       267 ~HL~~l~i~pqif---giRWlRlLFGREfpL~dLLiVWD~~l~~-------------d~pr~~Lv~~m~VsmLL~IRd~L  330 (625)
T KOG1091|consen  267 SHLVELGIEPQIF---GIRWLRLLFGREFPLQDLLIVWDHVLIF-------------DSPRGILVACMFVSMLLYIRDSL  330 (625)
T ss_pred             HHHHhcCCchHHH---HHHHHHHHHcchhHHHHHHHHhhhhhhc-------------cCchHHHHHHHHHHHHHHHHHHH
Confidence            3344445559999   99999999999999999999999 3333             45689999999887554434333

>PLN03159 cation/H(+) antiporter 15; Provisional

Probab=98.14  E-value=5.2e-06  Score=80.74  Aligned_cols=81  Identities=15%  Similarity=0.136  Sum_probs=60.3

Q ss_pred             CCCccccccCCchhhHHHHHHHHhcccchhhhhhhh-hhh-HhHHHHHhhhhhhc---H-------HHHH--HHHHHHHH
Q 036736           84 DGPQCSDKLGLSLDLGSFIVGVMISTTDFAKHTLDQ-EAC-RSLCKFQFSFRVLS---E-------DDIV--AGIFTGSL  149 (167)
Q Consensus        84 ~~a~l~~~lGLS~aLGAFiAGvmLs~s~~s~h~le~-eP~-r~lfl~lFF~~~~~---~-------~~~~--~~v~~~~~  149 (167)
                      ...++++.+|+|..+|||++|++++++++++...|. +++ .++|+-+||+.+-+   .       .|.+  .-+++..+
T Consensus       283 ~~a~lae~~Gl~~ilGAFlaGl~lp~~~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~  362 (832)
T PLN03159        283 ISGFITDAIGTHSVFGAFVFGLVIPNGPLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASA  362 (832)
T ss_pred             HHHHHHHHhCccHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHH
Confidence            345688999999999999999999999886544555 887 89999999987655   1       1222  22233456


Q ss_pred             HHHHHHHHHHHHHhh
Q 036736          150 ARNLIVGVLALIFGI  164 (167)
Q Consensus       150 ~k~lv~~~l~~~~g~  164 (167)
                      .|.+..++.++.+|.
T Consensus       363 gK~~g~~l~a~~~g~  377 (832)
T PLN03159        363 GKIMGTIIIAFFYTM  377 (832)
T ss_pred             HHHHHHHHHHHHhCC
Confidence            899888888887764

>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p

Probab=97.91  E-value=1e-05  Score=63.30  Aligned_cols=53  Identities=23%  Similarity=0.465  Sum_probs=42.1

Q ss_pred             cchhhhhHHHHHhccc-CCCCCcccccchHHHHHHHhccchhhhhHHHHHHhhhcCC
Q 036736           28 SLFHDQTLEINLALNR-SSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDP   83 (167)
Q Consensus        28 ~~~~~~~le~~~~l~~-~~i~p~~y~~~aFRWI~LL~srEF~lad~LrIWD~lls~~   83 (167)
                      .++...+-+++..+++ .++.|..|   ++||+.++|++|++++.++|+||.++++.
T Consensus       144 ~ll~~~~p~l~~~l~~~~~i~~~~~---~~~W~~~lF~~~~~~~~~~riwD~~l~eG  197 (199)
T smart00164      144 RLVKEYDPDLYKHLKDKLGIDPSLY---ALRWFLTLFARELPLEIVLRIWDVLFAEG  197 (199)
T ss_pred             HHHHHHCHHHHHHHHHhcCCCchhH---HHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Confidence            3444444455555553 56669999   99999999999999999999999999985

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family

Probab=97.43  E-value=0.00012  Score=60.84  Aligned_cols=49  Identities=33%  Similarity=0.565  Sum_probs=42.2

Q ss_pred             CccccccCCchhhHHHHHHHHhcccchhhhhhhh--hhhHhHHHHHhhhhhh
Q 036736           86 PQCSDKLGLSLDLGSFIVGVMISTTDFAKHTLDQ--EACRSLCKFQFSFRVL  135 (167)
Q Consensus        86 a~l~~~lGLS~aLGAFiAGvmLs~s~~s~h~le~--eP~r~lfl~lFF~~~~  135 (167)
                      ..+++.+|+|..+|||++|+++++.+. ++.+++  +|++++|.-+||+..-
T Consensus       219 ~~la~~~g~s~~lgaf~aGl~~~~~~~-~~~l~~~l~~~~~~f~plFF~~~G  269 (273)
T TIGR00932       219 AYFADLLGLSMALGAFLAGVVLSESEY-RHKLESDLEPIGGVLLPLFFISVG  269 (273)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHcCCch-HHHHHHHHHhHHHHHHHHHHHHhC
Confidence            457789999999999999999999888 455666  9999999999998753

>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases []

Probab=97.27  E-value=0.00015  Score=56.41  Aligned_cols=50  Identities=24%  Similarity=0.497  Sum_probs=36.8

Q ss_pred             cchhhhhHHHHHhcccCCCCCcccccchHHHHHHHhccchhhhhHHHHHHhhh
Q 036736           28 SLFHDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLL   80 (167)
Q Consensus        28 ~~~~~~~le~~~~l~~~~i~p~~y~~~aFRWI~LL~srEF~lad~LrIWD~ll   80 (167)
                      .++...+.+++..+++.++.|..|   +++|+.++|+++++.++++|+||.++
T Consensus       142 ~ll~~~~P~l~~~l~~~~~~~~~~---~~~w~~~lF~~~l~~~~~~~lwD~l~  191 (214)
T PF00566_consen  142 QLLKKHDPELYNHLKQLGVDPEIY---AFPWFLTLFSRSLPFDDVLRLWDFLL  191 (214)
T ss_dssp             HHHHHHTHHHHHHHHHTT-GGHHH---HHHHHHTTTTTTS-HHHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhhhhhhhhhhhhh---hhhhhHhhcCCcCCHHHHHHHHHHHH
Confidence            334444444445555556669999   99999999999999999999999555

; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.

>COG5210 GTPase-activating protein [General function prediction only]

Probab=97.10  E-value=0.00068  Score=62.02  Aligned_cols=47  Identities=26%  Similarity=0.414  Sum_probs=38.0

Q ss_pred             hHHHHHhcccCCCCCcccccchHHHHHHHhccchhhhhHHHHHHhhhcCC
Q 036736           34 TLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDP   83 (167)
Q Consensus        34 ~le~~~~l~~~~i~p~~y~~~aFRWI~LL~srEF~lad~LrIWD~lls~~   83 (167)
                      +-+++-.+.+..+.+..|   ++||+.++|.++|+++.++|+||.+|.+.
T Consensus       361 ~p~l~~hl~~~~~~~~~~---~~~w~l~lF~~~~p~e~~lriwD~lf~eg  407 (496)
T COG5210         361 DPELYEHLLREGVVLLMF---AFRWFLTLFVREFPLEYALRIWDCLFLEG  407 (496)
T ss_pred             HHHHHHHHHHcCCchhhh---hHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence            333444444455558898   99999999999999999999999999983

>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]

Probab=96.67  E-value=0.00043  Score=59.19  Aligned_cols=81  Identities=22%  Similarity=0.185  Sum_probs=0.0

Q ss_pred             CCCCccccccCCchhhHHHHHHHHhcccchhhhhhhh-hhhH-hHHHHHhhhhhhc-------------HHHHHHHHHHH
Q 036736           83 PDGPQCSDKLGLSLDLGSFIVGVMISTTDFAKHTLDQ-EACR-SLCKFQFSFRVLS-------------EDDIVAGIFTG  147 (167)
Q Consensus        83 ~~~a~l~~~lGLS~aLGAFiAGvmLs~s~~s~h~le~-eP~r-~lfl~lFF~~~~~-------------~~~~~~~v~~~  147 (167)
                      .-...+++.+|+|..+|||++|++++.++.++...+. +++. +++..+||+..-+             ++..+.-+...
T Consensus       223 ~~~~~~a~~~g~s~~l~af~~Gl~~~~~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~  302 (380)
T PF00999_consen  223 LLLYGLAEILGLSGILGAFIAGLILSNSPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAI  302 (380)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhccccccccccccceeeeeehccccccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHH
Confidence            3346788999999999999999999988885554444 9999 8888888855443             11122222333


Q ss_pred             HHHHHHHHHHHHHHHh
Q 036736          148 SLARNLIVGVLALIFG  163 (167)
Q Consensus       148 ~~~k~lv~~~l~~~~g  163 (167)
                      .+.|.+..+...+..|
T Consensus       303 ~~~k~~~~~~~~~~~~  318 (380)
T PF00999_consen  303 LLGKFIGVYLASRLFG  318 (380)
T ss_dssp             ----------------
T ss_pred             HHhhhceeehhhhhcc
Confidence            4678887777776554

These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.

>PRK05326 potassium/proton antiporter; Reviewed

Probab=96.56  E-value=0.0053  Score=56.81  Aligned_cols=77  Identities=17%  Similarity=0.197  Sum_probs=50.0

Q ss_pred             ccccccCCchhhHHHHHHHHhcccchhhh-hhhh--hhhHhHHHHHhhhhhhc---HH--------HHHHHHHHHHHHHH
Q 036736           87 QCSDKLGLSLDLGSFIVGVMISTTDFAKH-TLDQ--EACRSLCKFQFSFRVLS---ED--------DIVAGIFTGSLARN  152 (167)
Q Consensus        87 ~l~~~lGLS~aLGAFiAGvmLs~s~~s~h-~le~--eP~r~lfl~lFF~~~~~---~~--------~~~~~v~~~~~~k~  152 (167)
                      .+++.+|.|..+|+|++|+++++++.+++ ..+.  +++..++..+||+..-+   +.        .++..+++++++|.
T Consensus       237 ~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~  316 (562)
T PRK05326        237 ALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDIALPALLLALFLILVARP  316 (562)
T ss_pred             HHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788999999999999999999876332 2333  66666777777765443   21        12223344556677


Q ss_pred             HHHHHHHHHHh
Q 036736          153 LIVGVLALIFG  163 (167)
Q Consensus       153 lv~~~l~~~~g  163 (167)
                      +.++.-.+.+|
T Consensus       317 l~v~l~~~~~~  327 (562)
T PRK05326        317 LAVFLSLLPFR  327 (562)
T ss_pred             HHHHHHHccCC
Confidence            76665554443

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=94.34  E-value=0.022  Score=55.29  Aligned_cols=62  Identities=21%  Similarity=0.333  Sum_probs=51.2

Q ss_pred             ccCcchhhhhHHHHHhcccCCCCCcccccchHHHHHHHhccchhhhhHHHHHHhhhcCCCCCccc
Q 036736           25 KHSSLFHDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPDGPQCS   89 (167)
Q Consensus        25 ~~~~~~~~~~le~~~~l~~~~i~p~~y~~~aFRWI~LL~srEF~lad~LrIWD~lls~~~~a~l~   89 (167)
                      +.+++.-..|-|+.+.+.+.++.|+.|   |+.|+-..|+.+|+...-+.+||.++.+..+.-+|
T Consensus       485 ~f~~l~AfhDpeL~qHl~~~~f~~eLy---AiPwflT~Fshvlpl~kil~LwD~lml~~~SFplm  546 (725)
T KOG1093|consen  485 MFSQLLAFHDPELLQHLIDIGFIPELY---AIPWFLTMFSHVLPLHKILHLWDNLMLGHSSFPLM  546 (725)
T ss_pred             HHHHHHHhcCHHHHHHHHHcCCcHHHH---HHHHHHHHHHhhccHHHHHHHHHHHhcCCCccHHH
Confidence            345555556666667777788889999   99999999999999999999999999997766554

>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]

Probab=87.87  E-value=0.57  Score=45.06  Aligned_cols=54  Identities=19%  Similarity=0.386  Sum_probs=46.8

Q ss_pred             chhhhhHHHHHhcccCCCCCcccccchHHHHHHHhccchhhhhHHHHHHhhhcCCCC
Q 036736           29 LFHDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPDG   85 (167)
Q Consensus        29 ~~~~~~le~~~~l~~~~i~p~~y~~~aFRWI~LL~srEF~lad~LrIWD~lls~~~~   85 (167)
                      ++++.+.|+--.++...|+|..|   ++.|+..+|+.-..+..+.-+||-|+...+-
T Consensus       162 LlqYHdPelc~~LdtkkitPd~Y---~lnWf~sLFas~~Stev~~a~WdlY~qqaDP  215 (669)
T KOG3636|consen  162 LLQYHDPELCNHLDTKKITPDMY---TLNWFASLFASSMSTEVCHALWDLYIQQADP  215 (669)
T ss_pred             HHHhcCHHHhhhhhccccCchHH---HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCc
Confidence            45666777767777888889999   9999999999999999999999999987663

>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.58  E-value=1.2  Score=41.67  Aligned_cols=46  Identities=22%  Similarity=0.469  Sum_probs=36.5

Q ss_pred             HHHHhcccCCCCCcccccchHHHHHHHhccchhhhhHHHHHHhhhcCCC
Q 036736           36 EINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPD   84 (167)
Q Consensus        36 e~~~~l~~~~i~p~~y~~~aFRWI~LL~srEF~lad~LrIWD~lls~~~   84 (167)
                      +++..++....+-..+   ++.|+.+++.--.+...+|+|||.+|.+..
T Consensus       303 kl~~~l~~~~~~~~l~---t~~wfLt~f~d~lP~~t~LrIwD~~f~eGs  348 (436)
T KOG2058|consen  303 KLSLHLEGNGVDASLE---TLPWFLTLFVDILPSETVLRIWDCLFYEGS  348 (436)
T ss_pred             HHHHhhhhcCCCeeee---ehhhhHHHhcccccHHHHHHHHHHHHhccc
Confidence            3333344444447777   999999999999999999999999999854

>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]

Probab=82.42  E-value=0.91  Score=43.71  Aligned_cols=36  Identities=22%  Similarity=0.476  Sum_probs=31.0

Q ss_pred             chHHHHHHHhccchhhhhHHHHHHhhhcCCCCCccccccC
Q 036736           54 SSILWITLLLTHEFNIADNLHIWDTLLSDPDGPQCSDKLG   93 (167)
Q Consensus        54 ~aFRWI~LL~srEF~lad~LrIWD~lls~~~~a~l~~~lG   93 (167)
                      |+-||+.+-|-|||+.+.+||+|...|++    ++++++.
T Consensus       645 fchrwlllcfkref~ea~airiweacwa~----y~tdyfh  680 (781)
T KOG2224|consen  645 FCHRWLLLCFKREFPEAEAIRIWEACWAH----YLTDYFH  680 (781)
T ss_pred             HHHHHHHHHhhhcccHHHHHHHHHHHHHH----hhHHHHH
Confidence            48999999999999999999999999987    4555553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	167
1fkm_A	396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	2e-05
2qfz_A	345	TBC1 domain family member 22A; RAB-GAP, GTPase act	5e-05

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 58  WITLLLTHEFNIADNLHIWDTLLSDPDG 85
           W+  LL  EF +   + +WDT LS+   
Sbjct: 236 WMNCLLMREFQMGTVIRMWDTYLSETSQ 263

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345

 Score = 41.5 bits (97), Expect = 5e-05
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 58  WITLLLTHEFNIADNLHIWDTLLSDPDGPQ 87
           W+  LL  E  +   + +WDT  S+PDG  
Sbjct: 249 WMNNLLMREVPLRCTIRLWDTYQSEPDGFS 278

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	167
2qfz_A	345	TBC1 domain family member 22A; RAB-GAP, GTPase act	98.24
1fkm_A	396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	98.19
3hzj_A	310	Rabgap1L, RAB GTPase-activating protein 1-like; st	98.02
3qwl_A	294	TBC1 domain family member 7; RAB GTPase activation	98.01
3qye_A	331	TBC1 domain family member 1; rabgap, RAB, myocytes	97.99
2qq8_A	334	TBC1 domain family member 14; structural genomics	97.98
4hl4_A	292	TBC1 domain family member 20; rabgap, RAB1B, hydro	97.85
1zcd_A	388	Na(+)/H(+) antiporter 1; membrane protein; 3.45A {	81.94

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A

Probab=98.24  E-value=3.2e-07  Score=77.29  Aligned_cols=54  Identities=22%  Similarity=0.399  Sum_probs=43.6

Q ss_pred             cchhhhhHHHHHhcccCCCCCcccccchHHHHHHHhccchhhhhHHHHHHhhhcCCC
Q 036736           28 SLFHDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPD   84 (167)
Q Consensus        28 ~~~~~~~le~~~~l~~~~i~p~~y~~~aFRWI~LL~srEF~lad~LrIWD~lls~~~   84 (167)
                      .++...+-+++..+++.++.|++|   ++||+.++|++||++++++|+||.++++..
T Consensus       222 ~ll~~~dP~L~~hL~~~~i~~~~f---~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~  275 (345)
T 2qfz_A          222 ELVSRIDEQVHRHLDQHEVRYLQF---AFRWMNNLLMREVPLRCTIRLWDTYQSEPD  275 (345)
T ss_dssp             HHHHHHCHHHHHHHHHTTCCHHHH---HHHHHHTTTTTTSCHHHHHHHHHHHTTSTT
T ss_pred             HHHHHHHHHHHHHHHHcCCchhhH---HHHHHHHHHcccCCHHHHHHHHHHHHhCCC
Confidence            344444555555555666669999   999999999999999999999999999854

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*

Probab=98.19  E-value=4e-07  Score=79.26  Aligned_cols=53  Identities=21%  Similarity=0.401  Sum_probs=43.3

Q ss_pred             cchhhhhHHHHHhcccCCCCCcccccchHHHHHHHhccchhhhhHHHHHHhhhcCC
Q 036736           28 SLFHDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDP   83 (167)
Q Consensus        28 ~~~~~~~le~~~~l~~~~i~p~~y~~~aFRWI~LL~srEF~lad~LrIWD~lls~~   83 (167)
                      +++...+-+++..+++.++.|++|   ++||+.++|+|||++++++|+||.++++.
T Consensus       209 ~LL~~~dP~L~~hL~~~~i~~~~f---~~rW~l~LF~~~~p~~~vlrlWD~~l~eg  261 (396)
T 1fkm_A          209 QLVKRIDADLYNHFQNEHVEFIQF---AFRWMNCLLMREFQMGTVIRMWDTYLSET  261 (396)
T ss_dssp             HHHHHHCHHHHHHHHHTTCCTHHH---HHHHHHTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCchHHH---HHHHHHHHHHhhCCHHHHHHHHHHHHHCC
Confidence            344444555555556666679999   99999999999999999999999999976

>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}

Probab=98.02  E-value=1.8e-06  Score=71.78  Aligned_cols=49  Identities=20%  Similarity=0.302  Sum_probs=39.1

Q ss_pred             hhHHHHHhcccCCCCCcccccchHHHHHHHhccchhhhhHHHHHHhhhcCCC
Q 036736           33 QTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPD   84 (167)
Q Consensus        33 ~~le~~~~l~~~~i~p~~y~~~aFRWI~LL~srEF~lad~LrIWD~lls~~~   84 (167)
                      .+-+++..+++.++.|+.|   ++||+.++|++|+++++++|+||.++++..
T Consensus       172 ~~p~L~~hL~~~~i~~~~~---~~~W~ltlF~~~lp~~~~~riwD~~l~~g~  220 (310)
T 3hzj_A          172 QLPDLHSHFSDLNLEAHMY---ASQWFLTLFTAKFPLCMVFHIIDLLLCEGL  220 (310)
T ss_dssp             HCHHHHHHHHHHTCCGGGT---SHHHHHHTTTTTSCHHHHHHHHHHHHHHCT
T ss_pred             hChHHHHHHHHcCCChHHH---HHHHHHHHHhccCCHHHHHHHHHHHHHCCc
Confidence            3333444444455559999   999999999999999999999999999843

>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}

Probab=98.01  E-value=1.8e-06  Score=73.38  Aligned_cols=51  Identities=16%  Similarity=0.267  Sum_probs=39.0

Q ss_pred             chhhhhHHHHHhcccCCCCCcccccchHHHHHHHhccchhhhhHHHHHHhhhcC
Q 036736           29 LFHDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSD   82 (167)
Q Consensus        29 ~~~~~~le~~~~l~~~~i~p~~y~~~aFRWI~LL~srEF~lad~LrIWD~lls~   82 (167)
                      ++...+-+++..+++.++.|++|   ..||+.++|++||++++++|+||.++++
T Consensus       181 LL~~~dP~L~~HL~~~~i~~~~~---~~rWfl~lF~~~~p~~~vlRlWD~~~~~  231 (294)
T 3qwl_A          181 YLNLEDGRLLTHLRMCSAAPKLP---YDLWFKRCFAGCLPESSLQRVWDKVVSG  231 (294)
T ss_dssp             HHHHHCHHHHHHHHHTTCGGGSC---HHHHHTSTTTTTSCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHCCCCchhH---HHHHHHHHhccCCCHHHHHHHHHHHHhC
Confidence            33334444444444555559988   6699999999999999999999999994

>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A

Probab=97.99  E-value=1.9e-06  Score=72.10  Aligned_cols=53  Identities=17%  Similarity=0.362  Sum_probs=42.4

Q ss_pred             chhhhhHHHHHhcccCCCCCcccccchHHHHHHHhccchhhhhHHHHHHhhhcCCC
Q 036736           29 LFHDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPD   84 (167)
Q Consensus        29 ~~~~~~le~~~~l~~~~i~p~~y~~~aFRWI~LL~srEF~lad~LrIWD~lls~~~   84 (167)
                      ++...+-+++..+++.++.|++|   ++||+.++|++|+++++++|+||.++++..
T Consensus       202 ll~~~~p~L~~hL~~~~i~~~~~---~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~  254 (331)
T 3qye_A          202 LLHDYHRDLYNHLEEHEIGPSLY---AAPWFLTMFASQFPLGFVARVFDMIFLQGT  254 (331)
T ss_dssp             HHHHHCHHHHHHHHHTTCCGGGT---SHHHHHSTTTTTSCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHcCCChHHH---HHHHHHHHhhhhCCHHHHHHHHHHHHHCCc
Confidence            34444444555555666669999   999999999999999999999999999844

>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}

Probab=97.98  E-value=2.1e-06  Score=72.58  Aligned_cols=51  Identities=22%  Similarity=0.424  Sum_probs=40.6

Q ss_pred             hhhhhHHHHHhcccCCCCCcccccchHHHHHHHhccchhhhhHHHHHHhhhcCC
Q 036736           30 FHDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDP   83 (167)
Q Consensus        30 ~~~~~le~~~~l~~~~i~p~~y~~~aFRWI~LL~srEF~lad~LrIWD~lls~~   83 (167)
                      +...+.+++..+++.++.|..|   ++||+.++|++|+++++++|+||.++++.
T Consensus       208 l~~~~P~L~~hL~~~~i~~~~~---~~~W~ltlF~~~lp~~~~lriWD~~l~eg  258 (334)
T 2qq8_A          208 FEENLPKLFAHFKKNNLTPDIY---LIDWIFTLYSKSLPLDLACRIWDVFCRDG  258 (334)
T ss_dssp             HHHHCHHHHHHHHHTTCCGGGT---HHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred             HHHHCHHHHHHHHHcCCCccch---HHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence            3333444444455556669999   99999999999999999999999999974

>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*

Probab=97.85  E-value=9.2e-06  Score=67.22  Aligned_cols=56  Identities=9%  Similarity=0.212  Sum_probs=44.8

Q ss_pred             ccCcchhhhhHHHHHhcccCCCCCcccccchHHHHHHHhccchh-hhhHHHHHHhhhcCCC
Q 036736           25 KHSSLFHDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFN-IADNLHIWDTLLSDPD   84 (167)
Q Consensus        25 ~~~~~~~~~~le~~~~l~~~~i~p~~y~~~aFRWI~LL~srEF~-lad~LrIWD~lls~~~   84 (167)
                      ....++...+-+++..+++.++ +.+|   ++||+.++|++|++ +++++|+||.++++..
T Consensus       178 ~l~~ll~~~~P~L~~hL~~~~i-~~~~---~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~  234 (292)
T 4hl4_A          178 YLMPIIDQVNPELHDFMQSAEV-GTIF---ALSWLITWFGHVLSDFRHVVRLYDFFLACHP  234 (292)
T ss_dssp             GHHHHHHHHCHHHHHHHC-CCC-CSGG---GHHHHHTTTTTTSCCHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHCHHHHHHHHHcCC-Ccch---HHHHHHHHHhhhcCcHHHHHHHHHHHHHcCC
Confidence            3345566666677777778888 4577   99999999999996 9999999999999853

>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A

Probab=81.94  E-value=1.1  Score=39.56  Aligned_cols=50  Identities=20%  Similarity=0.180  Sum_probs=39.0

Q ss_pred             ccccccCCchhhHHHHHHHHhcccc----hhhhhhhh--hhhHh-HHHHHh-hhhhhc
Q 036736           87 QCSDKLGLSLDLGSFIVGVMISTTD----FAKHTLDQ--EACRS-LCKFQF-SFRVLS  136 (167)
Q Consensus        87 ~l~~~lGLS~aLGAFiAGvmLs~s~----~s~h~le~--eP~r~-lfl~lF-F~~~~~  136 (167)
                      ++++..|+.+.+|||++|+++...+    -..+.+|+  +|+-. +++=+| |.++-.
T Consensus       217 ~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~ilPlFaFanaGv  274 (388)
T 1zcd_A          217 TAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLFAFANAGV  274 (388)
T ss_dssp             HHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHHHHHHHHHCCC
T ss_pred             HHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCe
Confidence            5678999999999999999999853    12445666  88886 778899 877643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	167
d1fkma2	188	Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha	98.7

>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.70  E-value=1.4e-09  Score=83.81  Aligned_cols=53  Identities=19%  Similarity=0.355  Sum_probs=39.9

Q ss_pred             hhhHHHHHhcccCCCCCcccccchHHHHHHHhccchhhhhHHHHHHhhhcCCCCCc
Q 036736           32 DQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPDGPQ   87 (167)
Q Consensus        32 ~~~le~~~~l~~~~i~p~~y~~~aFRWI~LL~srEF~lad~LrIWD~lls~~~~a~   87 (167)
                      ..+-+++..+++.++.|++|   ++||+.++|+|||++++++|+||.++++.....
T Consensus        18 ~~dp~L~~hl~~~~i~~~~~---~~rW~~~lf~~~~~~~~~~rlWD~~~~~~~~~~   70 (188)
T d1fkma2          18 RIDADLYNHFQNEHVEFIQF---AFRWMNCLLMREFQMGTVIRMWDTYLSETSQEV   70 (188)
T ss_dssp             HHCHHHHHHHHHTTCCTHHH---HHHHHHTTTGGGSCHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHcCCCeeee---eHHHHHHHhhccCCHHHHHHHHHHHHhCCchhh
Confidence            33333444444445559999   999999999999999999999999999866443