Citrus Sinensis ID: 036741
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1030 | 2.2.26 [Sep-21-2011] | |||||||
| Q8VWF8 | 1020 | DNA-directed RNA polymera | N/A | no | 0.984 | 0.994 | 0.736 | 0.0 | |
| Q8L6J3 | 1021 | DNA-directed RNA polymera | N/A | no | 0.979 | 0.988 | 0.735 | 0.0 | |
| Q93Y94 | 1002 | DNA-directed RNA polymera | N/A | no | 0.942 | 0.969 | 0.699 | 0.0 | |
| Q8L6J5 | 1002 | DNA-directed RNA polymera | N/A | no | 0.916 | 0.942 | 0.716 | 0.0 | |
| Q9LFV6 | 1011 | DNA-directed RNA polymera | yes | no | 0.973 | 0.992 | 0.665 | 0.0 | |
| P92969 | 976 | DNA-directed RNA polymera | no | no | 0.939 | 0.991 | 0.654 | 0.0 | |
| P69242 | 977 | DNA-directed RNA polymera | N/A | no | 0.804 | 0.848 | 0.682 | 0.0 | |
| P69243 | 977 | DNA-directed RNA polymera | N/A | no | 0.804 | 0.848 | 0.682 | 0.0 | |
| Q8L6J1 | 977 | DNA-directed RNA polymera | N/A | no | 0.805 | 0.849 | 0.682 | 0.0 | |
| O24600 | 993 | DNA-directed RNA polymera | no | no | 0.806 | 0.836 | 0.653 | 0.0 |
| >sp|Q8VWF8|RPOT2_NICSY DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Nicotiana sylvestris GN=RPOT2 PE=2 SV=2 | Back alignment and function desciption |
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Score = 1578 bits (4085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 763/1036 (73%), Positives = 872/1036 (84%), Gaps = 22/1036 (2%)
Query: 1 MSNNKTPIFFSANKFDHLPVCYYNHNNYNNNKPTIRFPSPEKISSVMWRNVAKQAISLHL 60
MS+ KTPI + N +KPT +P S +MWRN+ KQ S
Sbjct: 1 MSSTKTPISLTIKL------------NQFTDKPTGLDINPYHNSPIMWRNIIKQLSSRTP 48
Query: 61 KKPF----SRAYSFLGISQDSILRDKVKFVCLDMVPRGIHEVGSGRIGEILNHEDYMGRT 116
+K +R YSFLG QDSI +D KF L + +G +GE L ++++ R
Sbjct: 49 QKLLFSSKNRTYSFLGFGQDSIFKDNTKFRSLIPISCSNIVMGFQNLGEYLPGDEFLSRP 108
Query: 117 SFGVLKNDNFWCPRGYATVAEAV--SSTDVEEDVSIVEEIQELLQEMKKEEQREGENGSG 174
N+NF C + YA+VAEAV SSTD EEDVS+V+E+ ELL E+KKEE+++
Sbjct: 109 LIKNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVHELLTELKKEEKKQFA-FRR 167
Query: 175 RNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLF 234
R +R + GMG KY+ LK RQVK+ETEAWE+AA EY+ELL DMCEQKLAPNLPY+KSLF
Sbjct: 168 RKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLF 227
Query: 235 LGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRA 294
LGWFEPLRD IA+EQE C K K AYA YF QLPADMMAVITMHKLMGLLMTGG+HG A
Sbjct: 228 LGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTA 287
Query: 295 RVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDL 354
RVVQAA +IGDAIEQEVRIH FLEKTKK+ K+K+ E+G+ VT EQEKLRKKVT+L
Sbjct: 288 RVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEH---VTQEQEKLRKKVTNL 344
Query: 355 IKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFP 414
+KKQKL AV +IV+ QDD KPWGQDARAKVGSR+I+LL QTAYIQ PA+QLA PPDI P
Sbjct: 345 MKKQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIRP 404
Query: 415 AFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKG 474
AF H++RTV+KETK S++YG+I+C+ LV KGLERTARHMVIPYMPMLVPPVKWTGYDKG
Sbjct: 405 AFVHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKG 464
Query: 475 AHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWS 534
H +LPSYVMRTHGA+QQR+ VKR + QL+PVFEALDTLGNTKWR+N RVLSV+DRIW+
Sbjct: 465 GHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWA 524
Query: 535 CGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVAR 594
GGRLADLVDR+D PLPE+P+TEDEA KW+WKV++VKKENRERHSQRCDIELKL+VAR
Sbjct: 525 GGGRLADLVDRDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVAR 584
Query: 595 KMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLA 654
KMKDEE F+YPHNVDFRGRAYPMHP+LNHLGSD+CRG+LEFAEGR LG+SGL WLKIHLA
Sbjct: 585 KMKDEESFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIHLA 644
Query: 655 NLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEAL 714
NL+AGGV+KLS EGR+ FTENH+DDIFDS+DKPLEGRRWWL AEDPFQCLAVCINL+EA+
Sbjct: 645 NLFAGGVEKLSLEGRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSEAV 704
Query: 715 RSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLV 774
RSSSPET +SHIPVHQDGSCNGLQHYAALGRD LGAAAVNLVA EKPADVYSGIAARVL
Sbjct: 705 RSSSPETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLD 764
Query: 775 IIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA 834
I++RDAQRDPA FPDA+RA++L++QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA
Sbjct: 765 IMKRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA 824
Query: 835 PMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPV 894
+++ELFGA+CYAAKVTLTALGEMF+AAR IM+WLGECAKIIASEN+PVRWTTPLGLPV
Sbjct: 825 IADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPV 884
Query: 895 VQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKA 954
VQPYRK+GRH +KTSLQILTLQRETEKVMVKRQRTAFPPNF+HSLDGSHMMMTAVACR+A
Sbjct: 885 VQPYRKIGRHLIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRA 944
Query: 955 GLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPER 1014
GL FAGVHDSYWTHACDVD++NRILREKFVELYE PI E LL+SFQ S+P L+FPPLPER
Sbjct: 945 GLNFAGVHDSYWTHACDVDKLNRILREKFVELYEAPILEKLLESFQTSYPTLLFPPLPER 1004
Query: 1015 GDFDLREVLGSPYFFN 1030
GDFD+R+VL SPYFFN
Sbjct: 1005 GDFDMRDVLESPYFFN 1020
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DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Nicotiana sylvestris (taxid: 4096) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 6 |
| >sp|Q8L6J3|RPO2B_TOBAC DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial OS=Nicotiana tabacum GN=RPOT2-TOM PE=2 SV=2 | Back alignment and function description |
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| >sp|Q93Y94|RPOT1_NICSY DNA-directed RNA polymerase 1, mitochondrial OS=Nicotiana sylvestris GN=RPOT1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8L6J5|RPO1B_TOBAC DNA-directed RNA polymerase 1B, mitochondrial OS=Nicotiana tabacum GN=RPOT1-TOM PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9LFV6|RPOT2_ARATH DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=RPOT2 PE=1 SV=1 | Back alignment and function description |
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| >sp|P92969|RPOT1_ARATH DNA-directed RNA polymerase 1, mitochondrial OS=Arabidopsis thaliana GN=RPOT1 PE=2 SV=1 | Back alignment and function description |
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| >sp|P69242|RPOT3_NICSY DNA-directed RNA polymerase 3, chloroplastic OS=Nicotiana sylvestris GN=RPOT3 PE=2 SV=1 | Back alignment and function description |
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| >sp|P69243|RPO3A_TOBAC DNA-directed RNA polymerase 3A, chloroplastic OS=Nicotiana tabacum GN=RPOT3-SYL PE=3 SV=1 | Back alignment and function description |
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| >sp|Q8L6J1|RPO3B_TOBAC DNA-directed RNA polymerase 3B, chloroplastic OS=Nicotiana tabacum GN=RPOT3-TOM PE=2 SV=2 | Back alignment and function description |
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| >sp|O24600|RPOT3_ARATH DNA-directed RNA polymerase 3, chloroplastic OS=Arabidopsis thaliana GN=RPOT3 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1030 | ||||||
| 225451858 | 1035 | PREDICTED: DNA-directed RNA polymerase 2 | 0.991 | 0.986 | 0.756 | 0.0 | |
| 90111039 | 1020 | RecName: Full=DNA-directed RNA polymeras | 0.984 | 0.994 | 0.736 | 0.0 | |
| 17221593 | 1020 | T7 bacteriophage-type single subunit RNA | 0.984 | 0.994 | 0.735 | 0.0 | |
| 88933966 | 1021 | RecName: Full=DNA-directed RNA polymeras | 0.979 | 0.988 | 0.735 | 0.0 | |
| 225425009 | 978 | PREDICTED: DNA-directed RNA polymerase 1 | 0.945 | 0.995 | 0.739 | 0.0 | |
| 449447681 | 984 | PREDICTED: DNA-directed RNA polymerase 2 | 0.942 | 0.986 | 0.708 | 0.0 | |
| 62750823 | 1036 | DNA-dependent RNA polymerase [Spinacia o | 0.984 | 0.978 | 0.674 | 0.0 | |
| 224119272 | 847 | predicted protein [Populus trichocarpa] | 0.821 | 0.998 | 0.816 | 0.0 | |
| 356567146 | 992 | PREDICTED: DNA-directed RNA polymerase 2 | 0.870 | 0.904 | 0.783 | 0.0 | |
| 297738211 | 810 | unnamed protein product [Vitis vinifera] | 0.786 | 1.0 | 0.820 | 0.0 |
| >gi|225451858|ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial [Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1588 bits (4113), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 790/1044 (75%), Positives = 886/1044 (84%), Gaps = 23/1044 (2%)
Query: 1 MSNNKTPIFFSANKFDHLPVCYYNHNNYNNNKPTIRFPSPEKISSVMWRNVAKQAISLHL 60
MS+ KTPI SAN L + + KPT P+P K +VMWRN+AK+AI
Sbjct: 1 MSSGKTPIL-SANLGRDLDLII------SFEKPTNFRPNPLKKPTVMWRNIAKRAIPRAP 53
Query: 61 KK-------PFSRAYSFLGISQDSILRDKVKFVCLD---MVPRGIHEVGSGRIGEILNHE 110
+K P SR YSFLG SQD I + +KF + G E+G RIGEI + E
Sbjct: 54 RKCVYLDSQPLSRRYSFLGFSQDLIFPEIMKFGTFEPSSCSSSGFSEMGFRRIGEISSRE 113
Query: 111 DYMGRTSFGVLKND---NFWCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEEQR 167
D +GR SFG L+N + +CP+ YA+VAEAVSSTDVEEDVS +EIQELL EMKKEE+R
Sbjct: 114 DAVGRPSFGCLRNQMGFSGFCPKSYASVAEAVSSTDVEEDVSASDEIQELLGEMKKEEKR 173
Query: 168 EGENGSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNL 227
+ N R + ++ RGM G+Y L+ RQVKIETEAWE AA EY+ELLMDMCEQKLAPNL
Sbjct: 174 Q-VNFKRREKLKMERGMEQGRYLRLRRRQVKIETEAWELAAKEYKELLMDMCEQKLAPNL 232
Query: 228 PYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMT 287
PYMKSLFLGWFEPLRDAI KEQE CR+ K+K AYAPYFDQLPADMM+VITMHKL+GLLMT
Sbjct: 233 PYMKSLFLGWFEPLRDAIVKEQELCRLGKNKAAYAPYFDQLPADMMSVITMHKLVGLLMT 292
Query: 288 GGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKL 347
GGEHG RVVQAAC+IGDAIEQEVRIH FLEKTK+K K+K + EG + V EQEKL
Sbjct: 293 GGEHGSTRVVQAACVIGDAIEQEVRIHNFLEKTKRKKVGKDK-NVEGGGFDPVIHEQEKL 351
Query: 348 RKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPAD-QLA 406
RKKVT+L+KKQKL A R+IVKG D+ KPWG +A+AKVGSR+IELL QTAYIQ P D QLA
Sbjct: 352 RKKVTNLMKKQKLHAARQIVKGHDNSKPWGPEAKAKVGSRLIELLMQTAYIQPPVDNQLA 411
Query: 407 DAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPV 466
D PPDI PAF H +TV +E K +++GVIEC+PLV KGLERTARHMVIPY+PMLVPP+
Sbjct: 412 DTPPDIRPAFVHTFKTVMREAKKIGRRFGVIECDPLVKKGLERTARHMVIPYVPMLVPPL 471
Query: 467 KWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVL 526
KWTGYDKGAH FLPSYVMRTHGA+QQR+ VKR P+ QLEPVFEAL+TLGNTKWR+N R+
Sbjct: 472 KWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPRNQLEPVFEALNTLGNTKWRINKRLF 531
Query: 527 SVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDI 586
V+DRIW+ GG LADLVDRNDVPLPEKP+TEDEAQLRKW+WKV++VKK N ERHSQRCDI
Sbjct: 532 DVVDRIWAGGGCLADLVDRNDVPLPEKPDTEDEAQLRKWKWKVKSVKKANSERHSQRCDI 591
Query: 587 ELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGL 646
ELKL+VARKMKDE+GF+YPHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEGR LG SGL
Sbjct: 592 ELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGSSGL 651
Query: 647 HWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAV 706
HWLKIHLANL+AGGVDKLSHEGR+ FTENHLDDIFDSAD+PLEG+RWWL AEDPFQ LA
Sbjct: 652 HWLKIHLANLFAGGVDKLSHEGRITFTENHLDDIFDSADRPLEGKRWWLNAEDPFQFLAA 711
Query: 707 CINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYS 766
CINL+EALRSSSPET ISHIPVHQDGSCNGLQHYAALGRD LGA AVNLVA EKPADVYS
Sbjct: 712 CINLSEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDQLGATAVNLVAGEKPADVYS 771
Query: 767 GIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIK 826
GIAARVL I++RDA++DPA+FPDALRA++L++QVDRKLVKQTVMTSVYGVTYIGARDQIK
Sbjct: 772 GIAARVLDIMKRDAEKDPAIFPDALRARILINQVDRKLVKQTVMTSVYGVTYIGARDQIK 831
Query: 827 RRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRW 886
RRLKER A ++ ELFGA+CYAAK+TLTALGEMFQAAR IMSWLG+CAKIIASENQPVRW
Sbjct: 832 RRLKERNAIADDVELFGAACYAAKITLTALGEMFQAARSIMSWLGDCAKIIASENQPVRW 891
Query: 887 TTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMM 946
TTPLGLPVVQPYRKLGRH +KTSLQ+LTLQRETE +MVKRQRTAFPPNFVHSLDGSHMMM
Sbjct: 892 TTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETETIMVKRQRTAFPPNFVHSLDGSHMMM 951
Query: 947 TAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKL 1006
TA+AC+KAGL FAGVHDSYWTHACDVDEMNR+LREKFV+LYE PI ENLL+SFQ+SFP L
Sbjct: 952 TAIACKKAGLNFAGVHDSYWTHACDVDEMNRLLREKFVQLYETPILENLLESFQQSFPAL 1011
Query: 1007 VFPPLPERGDFDLREVLGSPYFFN 1030
FPPLPERGDFDLREVL SPYFFN
Sbjct: 1012 EFPPLPERGDFDLREVLESPYFFN 1035
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|90111039|sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2, chloroplastic/mitochondrial; AltName: Full=NsRpoT-B; AltName: Full=T7 bacteriophage-type single subunit RNA polymerase 2; Flags: Precursor gi|21425639|emb|CAC82575.2| phage-type RNA polymerase [Nicotiana sylvestris] | Back alignment and taxonomy information |
|---|
| >gi|17221593|dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana sylvestris] gi|17221595|dbj|BAB78465.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana sylvestris] | Back alignment and taxonomy information |
|---|
| >gi|88933966|sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial; AltName: Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type single subunit RNA polymerase 2B; Flags: Precursor gi|21425665|emb|CAC95020.1| mitochondrial and chloroplast RNA polymerase [Nicotiana tabacum] | Back alignment and taxonomy information |
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| >gi|225425009|ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449447681|ref|XP_004141596.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|62750823|emb|CAC80138.1| DNA-dependent RNA polymerase [Spinacia oleracea] | Back alignment and taxonomy information |
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| >gi|224119272|ref|XP_002331270.1| predicted protein [Populus trichocarpa] gi|222873695|gb|EEF10826.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356567146|ref|XP_003551782.1| PREDICTED: DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|297738211|emb|CBI27412.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1030 | ||||||
| UNIPROTKB|Q8VWF8 | 1020 | RPOT2 "DNA-directed RNA polyme | 0.979 | 0.989 | 0.715 | 0.0 | |
| UNIPROTKB|Q93Y94 | 1002 | RPOT1 "DNA-directed RNA polyme | 0.818 | 0.841 | 0.772 | 0.0 | |
| UNIPROTKB|P69242 | 977 | RPOT3 "DNA-directed RNA polyme | 0.812 | 0.856 | 0.673 | 1.10000000673e-316 | |
| TAIR|locus:2047515 | 993 | SCA3 "SCABRA 3" [Arabidopsis t | 0.806 | 0.836 | 0.649 | 6.2e-307 | |
| DICTYBASE|DDB_G0267416 | 950 | rpmA "DNA-dependent RNA polyme | 0.540 | 0.586 | 0.469 | 3.3e-147 | |
| SGD|S000001858 | 1351 | RPO41 "Mitochondrial RNA polym | 0.597 | 0.455 | 0.415 | 3.6e-143 | |
| ASPGD|ASPL0000068622 | 1391 | AN7609 [Emericella nidulans (t | 0.654 | 0.484 | 0.354 | 1.2e-140 | |
| POMBASE|SPAC26H5.12 | 1154 | rpo41 "mitochondrial RNA polym | 0.782 | 0.698 | 0.345 | 2.2e-135 | |
| CGD|CAL0005126 | 1300 | RPO41 [Candida albicans (taxid | 0.628 | 0.497 | 0.387 | 2.6e-131 | |
| ZFIN|ZDB-GENE-050208-458 | 1281 | si:dkey-21e2.1 "si:dkey-21e2.1 | 0.623 | 0.501 | 0.413 | 5.4e-130 |
| UNIPROTKB|Q8VWF8 RPOT2 "DNA-directed RNA polymerase 2, chloroplastic/mitochondrial" [Nicotiana sylvestris (taxid:4096)] | Back alignment and assigned GO terms |
|---|
Score = 3776 (1334.3 bits), Expect = 0., P = 0.
Identities = 728/1017 (71%), Positives = 821/1017 (80%)
Query: 19 PVCXXXXXXXXXXKPTIRFPSPEKISSVMWRNVAKQAISLHLKKP-FS---RAYSFLGIS 74
P+ KPT +P S +MWRN+ KQ S +K FS R YSFLG
Sbjct: 7 PISLTIKLNQFTDKPTGLDINPYHNSPIMWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFG 66
Query: 75 QDSILRDKVKFVCLDMVPRGIHEVGSGRIGEILNHEDYMGRTSFGVLKNDNFWCPRGYAT 134
QDSI +D KF L + +G +GE L ++++ R N+NF C + YA+
Sbjct: 67 QDSIFKDNTKFRSLIPISCSNIVMGFQNLGEYLPGDEFLSRPLIKNQVNNNFCCRKSYAS 126
Query: 135 VAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV-ARGMGSGKYRMLK 193
VAEA + GMG KY+ LK
Sbjct: 127 VAEAVAVSSTDAEEDVSVVDEVHELLTELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLK 186
Query: 194 MRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCR 253
RQVK+ETEAWE+AA EY+ELL DMCEQKLAPNLPY+KSLFLGWFEPLRD IA+EQE C
Sbjct: 187 RRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCS 246
Query: 254 MAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRI 313
K K AYA YF QLPADMMAVITMHKLMGLLMTGG+HG ARVVQAA +IGDAIEQEVRI
Sbjct: 247 QGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRI 306
Query: 314 HKFLXXXXXXXXXXXXXXXXXXXSNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDF 373
H FL VT EQEKLRKKVT+L+KKQKL AV +IV+ QDD
Sbjct: 307 HNFLEKTKKQKAEKDKQKED---GEHVTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDS 363
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKK 433
KPWGQDARAKVGSR+I+LL QTAYIQ PA+QLA PPDI PAF H++RTV+KETK S++
Sbjct: 364 KPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIRPAFVHSVRTVAKETKSASRR 423
Query: 434 YGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQR 493
YG+I+C+ LV KGLERTARHMVIPYMPMLVPPVKWTGYDKG H +LPSYVMRTHGA+QQR
Sbjct: 424 YGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQR 483
Query: 494 DTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEK 553
+ VKR + QL+PVFEALDTLGNTKWR+N RVLSV+DRIW+ GGRLADLVDR+D PLPE+
Sbjct: 484 EAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWAGGGRLADLVDRDDAPLPEE 543
Query: 554 PETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGR 613
P+TEDEA KW+WKV++VKKENRERHSQRCDIELKL+VARKMKDEE F+YPHNVDFRGR
Sbjct: 544 PDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEESFFYPHNVDFRGR 603
Query: 614 AYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFT 673
AYPMHP+LNHLGSD+CRG+LEFAEGR LG+SGL WLKIHLANL+AGGV+KLS EGR+ FT
Sbjct: 604 AYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIHLANLFAGGVEKLSLEGRIGFT 663
Query: 674 ENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGS 733
ENH+DDIFDS+DKPLEGRRWWL AEDPFQCLAVCINL+EA+RSSSPET +SHIPVHQDGS
Sbjct: 664 ENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETSVSHIPVHQDGS 723
Query: 734 CNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRA 793
CNGLQHYAALGRD LGAAAVNLVA EKPADVYSGIAARVL I++RDAQRDPA FPDA+RA
Sbjct: 724 CNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLDIMKRDAQRDPAEFPDAVRA 783
Query: 794 KLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTL 853
++L++QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA +++ELFGA+CYAAKVTL
Sbjct: 784 RVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDSELFGAACYAAKVTL 843
Query: 854 TALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQIL 913
TALGEMF+AAR IM+WLGECAKIIASEN+PVRWTTPLGLPVVQPYRK+GRH +KTSLQIL
Sbjct: 844 TALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVVQPYRKIGRHLIKTSLQIL 903
Query: 914 TLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVD 973
TLQRETEKVMVKRQRTAFPPNF+HSLDGSHMMMTAVACR+AGL FAGVHDSYWTHACDVD
Sbjct: 904 TLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACDVD 963
Query: 974 EMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
++NRILREKFVELYE PI E LL+SFQ S+P L+FPPLPERGDFD+R+VL SPYFFN
Sbjct: 964 KLNRILREKFVELYEAPILEKLLESFQTSYPTLLFPPLPERGDFDMRDVLESPYFFN 1020
|
|
| UNIPROTKB|Q93Y94 RPOT1 "DNA-directed RNA polymerase 1, mitochondrial" [Nicotiana sylvestris (taxid:4096)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P69242 RPOT3 "DNA-directed RNA polymerase 3, chloroplastic" [Nicotiana sylvestris (taxid:4096)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2047515 SCA3 "SCABRA 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0267416 rpmA "DNA-dependent RNA polymerase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| SGD|S000001858 RPO41 "Mitochondrial RNA polymerase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
| ASPGD|ASPL0000068622 AN7609 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
| POMBASE|SPAC26H5.12 rpo41 "mitochondrial RNA polymerase Rpo41" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
| CGD|CAL0005126 RPO41 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-050208-458 si:dkey-21e2.1 "si:dkey-21e2.1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q93Y94 | RPOT1_NICSY | 2, ., 7, ., 7, ., 6 | 0.6995 | 0.9427 | 0.9690 | N/A | no |
| P69243 | RPO3A_TOBAC | 2, ., 7, ., 7, ., 6 | 0.6821 | 0.8048 | 0.8485 | N/A | no |
| P69242 | RPOT3_NICSY | 2, ., 7, ., 7, ., 6 | 0.6821 | 0.8048 | 0.8485 | N/A | no |
| Q8VWF8 | RPOT2_NICSY | 2, ., 7, ., 7, ., 6 | 0.7364 | 0.9844 | 0.9941 | N/A | no |
| Q9LFV6 | RPOT2_ARATH | 2, ., 7, ., 7, ., 6 | 0.6657 | 0.9737 | 0.9920 | yes | no |
| Q8L6J5 | RPO1B_TOBAC | 2, ., 7, ., 7, ., 6 | 0.7163 | 0.9165 | 0.9421 | N/A | no |
| Q8L6J1 | RPO3B_TOBAC | 2, ., 7, ., 7, ., 6 | 0.6821 | 0.8058 | 0.8495 | N/A | no |
| Q8L6J3 | RPO2B_TOBAC | 2, ., 7, ., 7, ., 6 | 0.7351 | 0.9796 | 0.9882 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.7 | 0.983 |
| 4th Layer | 2.7.7.6 | 0.979 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1030 | |||
| COG5108 | 1117 | COG5108, RPO41, Mitochondrial DNA-directed RNA pol | 0.0 | |
| pfam00940 | 394 | pfam00940, RNA_pol, DNA-dependent RNA polymerase | 0.0 | |
| PHA00452 | 807 | PHA00452, PHA00452, T3/T7-like RNA polymerase | 1e-180 |
| >gnl|CDD|227439 COG5108, RPO41, Mitochondrial DNA-directed RNA polymerase [Transcription] | Back alignment and domain information |
|---|
Score = 622 bits (1605), Expect = 0.0
Identities = 301/903 (33%), Positives = 439/903 (48%), Gaps = 103/903 (11%)
Query: 190 RMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKE- 248
+ L+ + + E W KA E E + +K A ++ L W+ + +E
Sbjct: 254 KWLEKSAIALAEEMW-KAGIERFEKRGEKNREKNA------EASNLSWYRMIIHLHKEEI 306
Query: 249 ---------QERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQA 299
+ A ++ Y PY D +A +T+ +L L+ R+
Sbjct: 307 AGLLEALLAEASLGKAGKRLTYGPYLKLADLDKVAHLTIRELFDLVSMRRYDRGMRLTPL 366
Query: 300 ACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQK 359
+ +G +E E +F K E K+ E + V K
Sbjct: 367 SIRLGAMVEDEFFSEQFKGHEKDAYEDARKKIPE------------QFHNAV-----HNK 409
Query: 360 LPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLA--DAPPDIFPAFT 417
R +++ W QD +AKVGS + LL A I+ +A F AF
Sbjct: 410 RSMTRHAKHKGAEWQDWPQDIKAKVGSVALCLLLSVAKIEVKLIDIATEQTLKGEFEAFR 469
Query: 418 HALRTVSKETKGGSKKYGVIECNPLVLKGLERTAR--HMVIPYMPMLVPPVKWTGYDKGA 475
H+ K GV+ + + L +R + +PMLVPP WT + +G
Sbjct: 470 HS------YQYHNGTKIGVVATHETLDWLLTENSRLAPLSPQLLPMLVPPKPWTSWFRGG 523
Query: 476 HFFLPSYVMRTHGAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWS 534
+++ ++R +Q + + ++ V+ +++ LGNT W +N+RV V+ +W+
Sbjct: 524 YWYGRVRLLRLKKTGEQVRYLLMASENGDMDKVYHSINALGNTAWSINHRVFEVMASLWN 583
Query: 535 CGGRLADLVDRNDVPL--PEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSV 592
G + +D+ L P E + +W+ + + + + N S+RCD KL +
Sbjct: 584 NGETFLCIPQADDMWLAPPMPREDMSPEEFSRWKSERKTIAEANARAVSKRCDFNYKLEI 643
Query: 593 ARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIH 652
AR DE+ FY+PH +DFRGRAYP+ +LNH G+D RG+L+FA G+ LG GL WLKIH
Sbjct: 644 ARAFLDEK-FYFPHQLDFRGRAYPLSLHLNHQGNDASRGLLQFANGKPLGPEGLDWLKIH 702
Query: 653 LANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTE 712
LANL+ GVDK S R+AF + +I DSA+ PL+G RWWL A+ P+Q LA C E
Sbjct: 703 LANLF--GVDKCSMNERVAFVMANQQEILDSAENPLDGNRWWLTADKPWQALAFCFEWQE 760
Query: 713 ALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARV 772
+ E FISH+PV QDG+CNGLQHYAALG D GAA VNLV +KP DVY+ +A+ V
Sbjct: 761 YVAEGDHEAFISHLPVQQDGTCNGLQHYAALGGDEEGAAQVNLVPSDKPNDVYATVASVV 820
Query: 773 LVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER 832
+ ++ A+ AK L + R +VK+TVMT+VYGVTY+GA QI +RL
Sbjct: 821 IAKLRDIAEAGDET------AKELKDKETRTVVKETVMTNVYGVTYVGATRQITKRL-TL 873
Query: 833 GAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKII--------------- 877
+ + Y K A +F AA I WL +C I
Sbjct: 874 IYGASKFDTVDPWKYLTKEVFPAERTLFAAAHFIQDWLWDCVGEIVVSAAGDMDWLQKKA 933
Query: 878 ---ASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRE--TEKVMVKRQRTAFP 932
A E+ PV WTTPLGLP+VQPYR + ++T+LQ + +Q + ++KV ++Q + P
Sbjct: 934 GIKADESLPVIWTTPLGLPIVQPYRTSEQKQLETNLQTVFIQLDVASKKVDKRKQGSGIP 993
Query: 933 PNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIF 992
PNF+HSLD +HM +T C G+ FA VHDSYWTHA D D MN+ LRE+FV+L+
Sbjct: 994 PNFIHSLDAAHMQLTVSRCHDQGIRFALVHDSYWTHAGDADAMNQFLREEFVKLHGDHDV 1053
Query: 993 ENLLDSF--------------------------QKSFPKLVFPPLPERGDFDLREVLGSP 1026
L F + ++ L PPLPE+G DL +VL S
Sbjct: 1054 LRLKAEFGRRYKGFLVSKKAIKANDEDLTAKLGEGTYIPLELPPLPEKGSLDLSQVLESA 1113
Query: 1027 YFF 1029
YFF
Sbjct: 1114 YFF 1116
|
Length = 1117 |
| >gnl|CDD|216207 pfam00940, RNA_pol, DNA-dependent RNA polymerase | Back alignment and domain information |
|---|
| >gnl|CDD|222797 PHA00452, PHA00452, T3/T7-like RNA polymerase | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1030 | |||
| KOG1038 | 1088 | consensus Mitochondrial/chloroplast DNA-directed R | 100.0 | |
| PHA00452 | 807 | T3/T7-like RNA polymerase | 100.0 | |
| COG5108 | 1117 | RPO41 Mitochondrial DNA-directed RNA polymerase [T | 100.0 | |
| PF00940 | 405 | RNA_pol: DNA-dependent RNA polymerase; InterPro: I | 100.0 | |
| PF14700 | 318 | RPOL_N: DNA-directed RNA polymerase N-terminal; PD | 100.0 | |
| smart00482 | 206 | POLAc DNA polymerase A domain. | 91.97 | |
| COG5108 | 1117 | RPO41 Mitochondrial DNA-directed RNA polymerase [T | 88.16 | |
| cd08637 | 377 | DNA_pol_A_pol_I_C Polymerase I functions primarily | 85.15 | |
| cd08638 | 373 | DNA_pol_A_theta DNA polymerase theta is a low-fide | 84.04 | |
| PRK14975 | 553 | bifunctional 3'-5' exonuclease/DNA polymerase; Pro | 82.34 |
| >KOG1038 consensus Mitochondrial/chloroplast DNA-directed RNA polymerase RPO41, provides primers for DNA replication-initiation [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-254 Score=2175.73 Aligned_cols=988 Identities=58% Similarity=0.921 Sum_probs=890.5
Q ss_pred cccCCCCCcccccCCCCCCCCCCccCCCCCccchhhHHHHHHHH------hhhcccCCCcccccccc--ccC---ccccc
Q 036741 12 ANKFDHLPVCYYNHNNYNNNKPTIRFPSPEKISSVMWRNVAKQA------ISLHLKKPFSRAYSFLG--ISQ---DSILR 80 (1030)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--~~~---~~~~~ 80 (1030)
.+.++++++-| |-++.-++....+|..++-.||+|+..++ .++.. ..++.++.-+| .+. +++|+
T Consensus 58 ~~~~~~~~~~~----~~~~~~~~q~~~~~~~~~l~~~~~~l~~s~~~~t~~~~~~-~~l~~~s~t~~l~~~~~~i~~~~S 132 (1088)
T KOG1038|consen 58 LKGSQLLSPVY----NLYLMLFFQDEYFPLTISLPMWRNLLLKSFQNETMALRRH-AALNPSSTTLGLLDPVEAISGIFS 132 (1088)
T ss_pred hhhhhhhchhh----hhhhhhhccCCCcHHHHhhHHhhhhHHHHhhhhhHHHHhh-ccCCchhhcccccchhhcchhhhh
Confidence 55566666621 11123344477889999999999999999 77766 45443333222 222 55565
Q ss_pred c---ccc-ccccccCCCCcccccccccccccccccccCCCccccccCCCcccCCcccccccccccCCccccchhHHHHHH
Q 036741 81 D---KVK-FVCLDMVPRGIHEVGSGRIGEILNHEDYMGRTSFGVLKNDNFWCPRGYATVAEAVSSTDVEEDVSIVEEIQE 156 (1030)
Q Consensus 81 ~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1030)
- ... |. .....++.++.|+++..+++..|.|-+-. .++ .| ..+||+-++|..-+++.+.|++.-+++.+
T Consensus 133 ~~~~~lt~~~-~~~~~~p~~~~~~~~~~~l~~~nsF~~~~--~~l---~G-~~~g~s~a~e~~~~~~~~~~s~~~~~~~~ 205 (1088)
T KOG1038|consen 133 SLAKVLTTLR-HKLLVSPEHVRGIRQLLGLNNINSFPHSS--EVL---SG-LIKGSSLAGESENPTDQEGDSSNKQEINE 205 (1088)
T ss_pred hhhhhhHHHh-cccccCchhhhhhHHhhccchhhcccchh--hhh---hc-ccccchHHHHHhCcccccccccchhhHHH
Confidence 3 222 11 11245577788899888888777432111 111 24 67888555777889999988888899999
Q ss_pred HHHHHHHHHHh-------hcccCCCccchhhhcCCChh-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccCCCC
Q 036741 157 LLQEMKKEEQR-------EGENGSGRNRRRVARGMGSG-KYRMLKMRQVKIETEAWEKAANEYR-ELLMDMCEQKLAPNL 227 (1030)
Q Consensus 157 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~l~~RQ~~lE~~~~~~a~~~~~-~~~~~~~~~g~a~~~ 227 (1030)
++++|.++... .....+....+.+..+++.. .|-.+.+||..+|.++|++|+++|+ ++..+||+..+++++
T Consensus 206 ~~~~m~ke~~~~~~~~~~~~~~~~~~~lk~v~k~~~~~~d~~~l~~Rq~~~e~~~~e~a~e~~k~el~~~~c~~~l~~~l 285 (1088)
T KOG1038|consen 206 LVTKMEKEGNSLNQISSKFLEESRDLPLKAVRKGFGDFKDFFNLDRRQVKLETEAWERAAEEWKIELESDMCEGSLAPNL 285 (1088)
T ss_pred HHhHhhhhhhhhhHHHHHHHHHHhcccHHHHHHhccchHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 99999999863 33333444445778888877 8999999999999999999999999 777899999999999
Q ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHhc--ccccccccccccCCchhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 036741 228 PY-MKSLFLGWFEPLRDAIAKEQERCRMA--KHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIG 304 (1030)
Q Consensus 228 ~~-~~~ll~~w~~~l~~~I~~e~~~~~~~--~~r~~y~p~L~~L~pe~lA~Iti~~~l~~~~~~~~~~~~~v~~~~~~IG 304 (1030)
|+ +++++++||++|+++|++|++.++.. +.|..|+|||++||++++|+|||+++|+++++|++.+++++++++.+||
T Consensus 286 p~~lk~lf~~W~~~l~~ai~ee~n~~r~~~~~~r~~Y~p~L~lL~a~k~aviti~el~~ll~tg~~~~~~~v~~aa~~~G 365 (1088)
T KOG1038|consen 286 PYNLKSLFLGWFKPLRDAIKEEINLLRALVRKGRLNYAPFLKLLDADKMAVITIHELMGLLMTGGETGGVRVVQAAKSLG 365 (1088)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHhcChhhHHHHHHHHHHhhhccCCCccchhHHHHHHHHH
Confidence 99 99999999999999999999999875 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCcccccCCCcchhhHHHHHHHHHHHHHHHhhchHHHHHHhhCCCCCCCCCHHHHHHH
Q 036741 305 DAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKV 384 (1030)
Q Consensus 305 ~aVe~E~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~kv 384 (1030)
++||+|+|++.++++..|++.-. .....++....++++..++++.++.+....+..++...+|+.+++++|
T Consensus 366 ~aveqe~ri~~~lq~~~k~~~~~---------~~~~~ke~~~~~~~v~~l~~~~k~~~~~~~~~~~~~~~pWp~~v~~kv 436 (1088)
T KOG1038|consen 366 RAVEQEFRIEQFLQRKTKNKAGD---------SYCELKELGKSRKEVRQLVQNLKLSQRLSGPESHLSEKPWPSAVQAKV 436 (1088)
T ss_pred HHHHHHHHHHHHHHHHhhcccch---------HHHHHHHhhcccHHHHHHHHHHHHHHHhcccccccccCCccHHHHHHH
Confidence 99999999999988765433211 112235667778888888888888887777776677899999999999
Q ss_pred HHHHHHHHHHHccccCCCCCCCCCCCCccCceEeeEeeeecccCCCCeeEEEEEeCHHHHHHHHhhhhccCCCCCCeeeC
Q 036741 385 GSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVP 464 (1030)
Q Consensus 385 G~~Li~~l~~~~~i~~~~~~~~~~~~~~~paF~h~~~~~~~~~~~~~k~~gvi~~~~~~~~~l~~~~~~~~~~~lPMlvp 464 (1030)
|++|+++||++++|+++.+++.++.++..|||.|.|++. +. .+.+++||+|+|||.+..+|++.+.++.++++|||||
T Consensus 437 Gs~L~~lL~~~aki~~~~~~~~~~~~~~~paf~h~f~~~-n~-~~~~~~~g~ie~~pll~r~leks~~~~~~~~vPMLvp 514 (1088)
T KOG1038|consen 437 GSRLIELLMQVAKIQVPADQPDTKLPDERPAFVHTFQVT-NG-QKGGRKYGVIECHPLLSRGLEKSALHFVPPLVPMLVP 514 (1088)
T ss_pred HHHHHHHHHHHhcCCCcccCcCcCccccchhhhhheeee-cc-cccceeeeeeecCHHHHHHhhhhhccccccccccccC
Confidence 999999999999999999999888999999999999954 22 2378999999999999999999988899999999999
Q ss_pred CcCcccCCCccccccCcceeecCChhhhHHH-HhcCCCCChhHHHHHHHhhcCcccEecHHHHHHHHHHHHcCCCCCCCC
Q 036741 465 PVKWTGYDKGAHFFLPSYVMRTHGAKQQRDT-VKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLV 543 (1030)
Q Consensus 465 P~pW~~~~~GGYL~~~s~l~R~~~~~~q~~~-l~~~~~~~l~~v~~aLN~Lqst~w~IN~~VL~vi~~~w~~g~~i~~l~ 543 (1030)
|+||+++++||||++++++||++++++|..+ +++.+.+++++||+|||.||+||||||++||||+.++|++||.+.+++
T Consensus 515 PkpWt~~~~Ggyl~~~s~lmRt~g~~~Q~~~llkas~~~~l~~v~daL~~LG~t~WrVN~rvldvV~riw~~Gg~~~~~v 594 (1088)
T KOG1038|consen 515 PKPWTGYDSGGYLFLPSYLMRTHGAKEQVDYLLKASPPGQLDPVFDALDTLGNTKWRVNRRVLDVVIRIWQNGGCFLLIV 594 (1088)
T ss_pred CCCCCCCCCCceEecchhhhhcCCcHHHHHHHHhcCChhhhHHHHHHHHHhcCCCeeecchHHHHHHHHHhcCCCccCCC
Confidence 9999999999999999999999999999885 555678899999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCC-CCccHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCCCceeeccccCCCCcccCCCCCCC
Q 036741 544 DRNDVPLPEKP-ETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLN 622 (1030)
Q Consensus 544 ~~~~~plP~~p-~~~d~~~~~~wk~~~~~~~~~~~~~~s~R~~~~~~L~iA~~f~~~~~fYfP~nlDFRGR~Yp~~~~Ln 622 (1030)
++.+.|+|++| ..+|+.+++.|+++.+.+.+.++++||+|||++|+|+||++|+|+ .||||||||||||+||+|||||
T Consensus 595 ~r~~~~lP~~P~~s~dp~~~~~wk~e~k~~~k~~~e~HS~RCD~~ykLsvAr~~~de-~Fy~PHNmDFRGRaYP~~PHlN 673 (1088)
T KOG1038|consen 595 PREDVPLPPKPTLSEDPAELKAWKWEVKKAQKVNRERHSLRCDAEYKLSVARKMKDE-EFYYPHNMDFRGRAYPLPPHLN 673 (1088)
T ss_pred CCCCCCCCCCCCCCcChHHHHHhHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccC-eeecCcccCcCCccCCCCchhc
Confidence 99999999999 678999999999999999999999999999999999999999998 5999999999999999999999
Q ss_pred CCCchhhhhhhhcccCcccCccchHHHHHHHHHhhcCCCCCCCHHHHHHHHHhhHHHHHHhhcCCCCcchhhhcCCChHH
Q 036741 623 HLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQ 702 (1030)
Q Consensus 623 ~qGsDl~RsLL~FaegkpLg~~Gl~WLkIhlAN~~g~G~DK~s~deRi~wv~~n~~~I~~sA~dPl~~~~wW~~Ad~PwQ 702 (1030)
|.|+|+|||||+||+|+|||++||+|||||+||+|| |+||+|+++|++|+++|+++|+|||++||+|++||++||||||
T Consensus 674 HLgsDlcRglLeF~~GkPLG~sGL~WLKIHlaNL~~-g~~kl~~~~RlAF~E~hl~DI~DSAd~PLtG~rWW~~AedPfQ 752 (1088)
T KOG1038|consen 674 HLGSDLCRGLLEFAEGKPLGPSGLRWLKIHLANLYA-GVDKLSLRDRLAFTEEHLDDIFDSADRPLTGRRWWLKAEDPFQ 752 (1088)
T ss_pred ccchHHHHHHHHHhcCCcCCccchhHHHHHHHHHhc-ccccccHHHHHHHHHHHHHHHhhcccCCCcccchhhcCCChHH
Confidence 999999999999999999999999999999999997 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcccccccccccCCCchhhHHHHhhCCcccccccccCCCCCcchhhhHHHHHHHHHHHHhhhc
Q 036741 703 CLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQR 782 (1030)
Q Consensus 703 fLA~C~El~~a~~~~~P~~y~S~lPV~qDGSCNGLQHyAAL~rD~~Ga~~VNLip~d~P~DvYs~Va~~V~~~i~~da~~ 782 (1030)
|||+|||+++|++++||+.|+||+||||||||||||||||||||..||++|||+|+|+|||||++||..|.+.+++||++
T Consensus 753 ~LA~C~elaea~RspdPeayiSH~PIHQDGSCNGLQHYAALGrD~~GA~~VNLvpsdkPqDVYs~VA~~V~~~~k~DAe~ 832 (1088)
T KOG1038|consen 753 CLAACMELAEALRSPDPEAYISHIPIHQDGSCNGLQHYAALGRDSEGAAAVNLVPSDKPQDVYSAVAARVEKIMKQDAEK 832 (1088)
T ss_pred HHHHHHHHHHHHcCCCHHHHHhcCCcccCCCcchHHHHHHhcCccccchhccccCCCCchhHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHhhccCccccccccceeeecccchhhHHHHHHHHHhhcCCCCchhhhhhhhhHHHHHHHHHHHHHHHh
Q 036741 783 DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQA 862 (1030)
Q Consensus 783 d~~~~~~~~~Ak~l~~~i~RKvVKqtVMT~vYGvT~~Gar~qI~~~L~~~g~~~d~~~~~~~a~ylak~i~~ai~e~f~~ 862 (1030)
|+ .+|++|.+.||||||||||||+|||||++|||+||.++|++++.++|+.++|.+|+|++++||+||+|||.+
T Consensus 833 g~------e~Ak~L~~~V~RKvVKQTVMT~VYGVTyvGAR~QI~krL~e~~~f~d~~~v~~as~Yltk~tf~aLrEmF~~ 906 (1088)
T KOG1038|consen 833 GP------EVAKILKDQVTRKVVKQTVMTSVYGVTYVGARLQIKKRLKEIDDFPDEKEVFDASCYLTKKTFEALREMFTA 906 (1088)
T ss_pred Ch------HHHHHHHHHHhHHHhhhheeeeeeeeeEecHHHHHHHHhhhccCcchhHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 96 699999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEcCCCCeEEEeeccCcceEEEeeeEEEEEe-cC-CCcCCHHhhhccCCCcchhhhh
Q 036741 863 ARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ-RE-TEKVMVKRQRTAFPPNFVHSLD 940 (1030)
Q Consensus 863 A~~im~WL~~~A~~i~~~~~pV~WtTPlGlpVvQ~Y~k~~~~~I~t~lq~~~l~-~~-~d~vd~rKq~~af~PNFIHSLD 940 (1030)
|+.||+||++||++|++++.||+||||+||||||||++.++++|+|.+|++++. .+ +++||.|||++|||||||||||
T Consensus 907 araIq~WlgecAklIs~~~~~V~WtTPLGLPVVQPYr~~~~~qirt~lQt~~~~~~d~~~~vn~rkQktaFPPNFIHSLD 986 (1088)
T KOG1038|consen 907 ARAIQDWLGECAKLISSENSPVEWTTPLGLPVVQPYRQEKKKQIRTGLQTLFLSPRDLTNKVNARKQKTAFPPNFIHSLD 986 (1088)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEecCCCCcccchhhhhhhhcccccceEEeecchhhccccchhhhhccCCCchhhccc
Confidence 999999999999999999999999999999999999999999999999999998 44 7899999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCcEEEeeccccCCCCChhHHHHHHHHHHHHhcCcchHHHHHHHHHH------------hCCCCCC
Q 036741 941 GSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQK------------SFPKLVF 1008 (1030)
Q Consensus 941 AsHmmlta~~~~~~gi~fa~VHDSFwTha~dvd~m~~ilRe~FV~Lys~~il~~l~e~f~~------------~~~~~~~ 1008 (1030)
||||||||++|.++||+||+|||||||||||||+||++|||+||+|||+|||++|+++|++ +|+.+.|
T Consensus 987 ~SHMmmTal~C~rqGl~FasVHDsyWTHAcDVd~MN~ilREqFV~Lhs~pIle~L~e~f~~ry~~~~~~~~~~s~l~l~f 1066 (1088)
T KOG1038|consen 987 GSHMMMTALACERQGLTFASVHDSYWTHACDVDVMNRILREQFVELHSQPILERLLESFEKRYKFKDSDFKNDSQLPLIF 1066 (1088)
T ss_pred chHHHHHHHHHHhcCCceeeeecchhccccchHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhccccchhhhhccCCccC
Confidence 9999999999999999999999999999999999999999999999999999999999999 4566789
Q ss_pred CCCCCCCCCCcccccCCCCCCC
Q 036741 1009 PPLPERGDFDLREVLGSPYFFN 1030 (1030)
Q Consensus 1009 p~~P~~G~LDL~~Vl~S~YFF~ 1030 (1030)
||+|++|+|||+.||+|+||||
T Consensus 1067 pplP~rGdfDLk~Vl~S~YFFs 1088 (1088)
T KOG1038|consen 1067 PPLPKRGDFDLKKVLDSTYFFS 1088 (1088)
T ss_pred CCCCCCCCccHHHHhccccccC
Confidence 9999999999999999999997
|
|
| >PHA00452 T3/T7-like RNA polymerase | Back alignment and domain information |
|---|
| >COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription] | Back alignment and domain information |
|---|
| >PF00940 RNA_pol: DNA-dependent RNA polymerase; InterPro: IPR002092 DNA-directed RNA polymerases 2 | Back alignment and domain information |
|---|
| >PF14700 RPOL_N: DNA-directed RNA polymerase N-terminal; PDB: 3SPA_A 1CEZ_A 1H38_B 1S77_D 1QLN_A 1S0V_D 3E2E_A 2PI4_A 3E3J_B 1S76_D | Back alignment and domain information |
|---|
| >smart00482 POLAc DNA polymerase A domain | Back alignment and domain information |
|---|
| >COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription] | Back alignment and domain information |
|---|
| >cd08637 DNA_pol_A_pol_I_C Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication | Back alignment and domain information |
|---|
| >cd08638 DNA_pol_A_theta DNA polymerase theta is a low-fidelity family A enzyme implicated in translesion synthesis and in somatic hypermutation | Back alignment and domain information |
|---|
| >PRK14975 bifunctional 3'-5' exonuclease/DNA polymerase; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1030 | ||||
| 3spa_A | 1134 | Crystal Structure Of Human Mitochondrial Rna Polyme | 1e-140 | ||
| 2pi4_A | 878 | T7rnap Complexed With A Phi10 Protein And Initiatin | 1e-76 | ||
| 3e2e_A | 889 | Crystal Structure Of An Intermediate Complex Of T7 | 1e-76 | ||
| 4rnp_A | 883 | Bacteriophage T7 Rna Polymerase, High Salt Crystal | 2e-76 | ||
| 1aro_P | 883 | T7 Rna Polymerase Complexed With T7 Lysozyme Length | 6e-76 |
| >pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase Length = 1134 | Back alignment and structure |
|
| >pdb|2PI4|A Chain A, T7rnap Complexed With A Phi10 Protein And Initiating Gtps. Length = 878 | Back alignment and structure |
| >pdb|3E2E|A Chain A, Crystal Structure Of An Intermediate Complex Of T7 Rnap And 7nt Of Rna Length = 889 | Back alignment and structure |
| >pdb|4RNP|A Chain A, Bacteriophage T7 Rna Polymerase, High Salt Crystal Form, Low Temperature Data, Alpha-Carbons Only Length = 883 | Back alignment and structure |
| >pdb|1ARO|P Chain P, T7 Rna Polymerase Complexed With T7 Lysozyme Length = 883 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 617 bits (1590), Expect = 0.0
Identities = 301/875 (34%), Positives = 445/875 (50%), Gaps = 61/875 (6%)
Query: 183 GMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLR 242
+ + L +Q+ +E A + + E K A +K+L W + L
Sbjct: 294 HLPLKTLQCLFEKQLHME-LASRVCVVSVEKPTLPSKEVKHARK--TLKTLRDQWEKALC 350
Query: 243 DAIAKEQERCR--MAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAA 300
A+ + + R + + + + P+ L + + + L L G +A
Sbjct: 351 RALRETKNRLEREVYEGRFSLYPFLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSA 410
Query: 301 CIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKL 360
+ Q R+ ++ + E E R+ L + L
Sbjct: 411 RTFSRHVVQRQRVSGQVQALQNHYRKYLCLLASDAE----VPEPCLPRQYWEALGAPEAL 466
Query: 361 PAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHAL 420
+PW + ++G + E+L Q + D+ + P H
Sbjct: 467 -----------REQPWPLPVQMELGKLLAEMLVQATQMPCSLDK-PHRSSRLVPVLYHVY 514
Query: 421 RTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHF 477
++ G+++ +P ++ LE+ A + +PML PP+ WT GA
Sbjct: 515 SFR------NVQQIGILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFL 568
Query: 478 FLPSYVMRT-HGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCG 536
P+ +MRT GA Q ++ ++ P L +AL LGN WRVN RVL ++ +++
Sbjct: 569 LSPTKLMRTVEGATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAK 628
Query: 537 GRLADLVDRNDVPLP-----EKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLS 591
G V P P + A+ + + ++ + +K RE HS R + +LS
Sbjct: 629 GCPQLGVPAPPSEAPQPPEAHLPHSAAPARKAELRRELAHCQKVAREMHSLRAEALYRLS 688
Query: 592 VARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKI 651
+A+ ++D F+ PHN+DFRGR YP P+ NHLGSD+ R +LEFA+GR LG GL WLKI
Sbjct: 689 LAQHLRDRV-FWLPHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKI 747
Query: 652 HLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLT 711
HL NL G + RLAF E +DDI DSAD+PL GR+WW+ AE+P+Q LA C+ +
Sbjct: 748 HLVNLT-GLKKREPLRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVA 806
Query: 712 EALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAAR 771
A+R+S P ++SH+PVHQDGSCNGLQHYAALGRD++GAA+VNL + P DVYSG+AA+
Sbjct: 807 NAVRASDPAAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQ 866
Query: 772 VLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 831
V V ++DAQR V A++L + RK+VKQTVMT VYGVT G R QI++RL+E
Sbjct: 867 VEVFRRQDAQRGMRV------AQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE 920
Query: 832 RGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLG 891
+ + ++ AS Y + +L EMF R I WL E A++I+ V W TPLG
Sbjct: 921 L-SDFPQEFVWEASHYLVRQVFKSLQEMFSGTRAIQHWLTESARLISHMGSVVEWVTPLG 979
Query: 892 LPVVQPYRKLGR-HTVKTSLQILTLQRETE---KVMVKRQRTAFPPNFVHSLDGSHMMMT 947
+PV+QPYR + + +Q +T + K ++Q+ FPPNF+HSLD SHMM+T
Sbjct: 980 VPVIQPYRLDSKVKQIGGGIQSITYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLT 1039
Query: 948 AVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFP--- 1004
A+ C + GLTF VHD YWTHA DV MN++ RE+FV L+ PI ++L K F
Sbjct: 1040 ALHCYRKGLTFVSVHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKRFCSEP 1099
Query: 1005 ---------KLVFPPLPERGDFDLREVLGSPYFFN 1030
K +P+ G FDL +V S YFF+
Sbjct: 1100 QKILEASQLKETLQAVPKPGAFDLEQVKRSTYFFS 1134
|
| >1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP elongation complex, transcription/DNA/RNA complex; 2.10A {Enterobacteria phage T7} SCOP: e.8.1.3 PDB: 1h38_A 1cez_A 1qln_A* 1s0v_A* 1s76_D* 1s77_D* 4rnp_A 3e2e_A* 3e3j_C* 1aro_P 2pi4_A* 2pi5_A Length = 883 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3q23_A Virion RNA polymerase; protein-DNA complex; HET: DNA G2P; 1.80A {Enterobacteria phage N4} PDB: 3q0a_A* 3q22_A* 3q24_A* 3c3l_A 3c46_A 3c2p_A* 2po4_A Length = 1118 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1030 | |||
| 1msw_D | 883 | DNA-directed RNA polymerase, bacteriophage T7 RNA; | 100.0 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 100.0 | |
| 3q23_A | 1118 | Virion RNA polymerase; protein-DNA complex; HET: D | 97.71 |
| >1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP elongation complex, transcription/DNA/RNA complex; 2.10A {Enterobacteria phage T7} SCOP: e.8.1.3 PDB: 1h38_A 1cez_A 1qln_A* 1s0v_A* 1s76_D* 1s77_D* 4rnp_A 3e2e_A* 3e3j_C* 1aro_P 2pi4_A* 2pi5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-205 Score=1856.04 Aligned_cols=795 Identities=28% Similarity=0.488 Sum_probs=689.5
Q ss_pred hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHHHHHHHHHHH-hccccccccc
Q 036741 186 SGKYR-MLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCR-MAKHKVAYAP 263 (1030)
Q Consensus 186 ~~~~~-~l~~RQ~~lE~~~~~~a~~~~~~~~~~~~~~g~a~~~~~~~~ll~~w~~~l~~~I~~e~~~~~-~~~~r~~y~p 263 (1030)
...|+ .|++||++||++++++|++||++.+++++++|+++++|++++|+.+|+++|+++|+++++..+ +.+.++.|+|
T Consensus 25 ~~~~~~~l~~rQ~~lE~e~~~~a~~r~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~g~~~~~~~ 104 (883)
T 1msw_D 25 ADHYGERLAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEEVKAKRGKRPTAFQ 104 (883)
T ss_dssp TTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCTTTT
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCChhhHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHH
Confidence 34455 578999999999999999999999999999999999999999999999999999999988776 3567899999
Q ss_pred ccccCCchhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccCCCcchhhHH
Q 036741 264 YFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTE 343 (1030)
Q Consensus 264 ~L~~L~pe~lA~Iti~~~l~~~~~~~~~~~~~v~~~~~~IG~aVe~E~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 343 (1030)
||++|+||++|+|||+++|+++++ .+++++++++.+||++||+|++++++.++.++++... .
T Consensus 105 ~L~~l~~e~lA~iti~~~l~~~~~---~~~~~~~~~~~~iG~ave~E~~~~~~~~~~~~~~~~~---------------~ 166 (883)
T 1msw_D 105 FLQEIKPEAVAYITIKTTLACLTS---ADNTTVQAVASAIGRAIEDEARFGRIRDLEAKHFKKN---------------V 166 (883)
T ss_dssp TTTSSCHHHHHHHHHHHHHHHHHH---CSCCBHHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHH---------------T
T ss_pred HHHhCCHHHHHHHHHHHHHHHhcc---cCCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---------------H
Confidence 999999999999999999999987 3567899999999999999999999987766433210 1
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHh-hC----CCCCCCCCHHHHHHHHHHHHHHHHHH-ccccCCCCCCCCCCCCccCceE
Q 036741 344 QEKLRKKVTDLIKKQKLPAVRRIV-KG----QDDFKPWGQDARAKVGSRVIELLTQT-AYIQSPADQLADAPPDIFPAFT 417 (1030)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~W~~~~~~kvG~~Li~~l~~~-~~i~~~~~~~~~~~~~~~paF~ 417 (1030)
.+.++++.+...++...+.+.+.. .. .+++.+|+..++++||++|+++|+++ +.++++..
T Consensus 167 ~~~l~~~~~~~~k~~~~~~~~~~~~~~g~~~~~~~~~W~~~~~~~vG~~Li~~l~~~~~~~~~~~~-------------- 232 (883)
T 1msw_D 167 EEQLNKRVGHVYKKAFMQVVEADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQ-------------- 232 (883)
T ss_dssp SHHHHHSCSHHHHHHHHHHHHHHSTTTTTTTTCCCCCCCTTHHHHHHHHHHHHHHHHCTTEEEECC--------------
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceecc--------------
Confidence 122333333223333333333321 21 36789999999999999999999996 56544321
Q ss_pred eeEeeeecccCCCCeeEEEEEeCHHHHHHHHhhh---hccCCCCCCeeeCCcCcccCCCcccccc---CcceeecCChhh
Q 036741 418 HALRTVSKETKGGSKKYGVIECNPLVLKGLERTA---RHMVIPYMPMLVPPVKWTGYDKGAHFFL---PSYVMRTHGAKQ 491 (1030)
Q Consensus 418 h~~~~~~~~~~~~~k~~gvi~~~~~~~~~l~~~~---~~~~~~~lPMlvpP~pW~~~~~GGYL~~---~s~l~R~~~~~~ 491 (1030)
..+..++++|+|++||++++.+.+.. ..+.+.+|||||||+||+++.+||||+. +..++|++.
T Consensus 233 --------~~~~~~k~~~~i~~~~~~~~~l~~~~~~~~~~~~~~lPMlvpP~pW~~~~~GGYl~~~~~~~~~ir~~~--- 301 (883)
T 1msw_D 233 --------NAGVVGQDSETIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRPLALVRTHS--- 301 (883)
T ss_dssp ----------------CCEEEECHHHHHHHHHHHHHHTTSCCCCCCBSSCCBCCSSSBSCBSSSCCSSCCBSEECSS---
T ss_pred --------ccCCCCceeeEEEeCHHHHHHHhhcccchhhcCCCCCceeeCCccCCCCCCCCccCCCcccchhhcccC---
Confidence 11223578999999999999998643 2344569999999999999999999974 335667653
Q ss_pred hHHHHhcCCCCChhHHHHHHHhhcCcccEecHHHHHHHHHHHH-cCCCCCCCCCCCCCCCCCCCCCc--cHHHHHHHHHH
Q 036741 492 QRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWS-CGGRLADLVDRNDVPLPEKPETE--DEAQLRKWQWK 568 (1030)
Q Consensus 492 q~~~l~~~~~~~l~~v~~aLN~Lqst~w~IN~~VL~vi~~~w~-~g~~i~~l~~~~~~plP~~p~~~--d~~~~~~wk~~ 568 (1030)
+.++++..+++++.||++||+||+|||+||++||+||+++|+ +|+++++||+..+.|+|++|++. +++++++|+++
T Consensus 302 -~~~~~~~~~~~l~~v~~aLN~L~~t~w~IN~~vL~vi~~~~~~~g~~~~~ip~~~~~~~P~~p~~~d~~~~~~~~~k~~ 380 (883)
T 1msw_D 302 -KKALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPVEDIPAIEREELPMKPEDIDMNPEALTAWKRA 380 (883)
T ss_dssp -TTHHHHTTTCCCHHHHHHHHHHHTCCEEECHHHHHHHHHHTTCSSCSSTTCCCSSCCCCCCC-----------CCTTHH
T ss_pred -HHHHHhccccchHHHHHHHHHhccCCeEecHHHHHHHHHHHhhcCCcccCCCCcCcCCCCCCCCccccCHHHHHHHHHH
Confidence 344555677899999999999999999999999999999999 99999999998889999998754 36789999999
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHhhcCCCceeeccccCCCCcccCCCCCCCCCCchhhhhhhhcccCcccCccchHH
Q 036741 569 VRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHW 648 (1030)
Q Consensus 569 ~~~~~~~~~~~~s~R~~~~~~L~iA~~f~~~~~fYfP~nlDFRGR~Yp~~~~Ln~qGsDl~RsLL~FaegkpLg~~Gl~W 648 (1030)
++++++.++++||+||+++++|++|++|+|++.||||||+|||||+||+| ||||||+|+|||||+||+|+|||++||+|
T Consensus 381 ~~~~~~~~~~~~S~r~~~~~~L~iA~~f~~~~~fYfPhnlDFRGR~Yp~p-~Ln~~GsDl~RsLL~FaegkpLG~~Gl~W 459 (883)
T 1msw_D 381 AAAVYRKDKARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYYW 459 (883)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSSSSCSCBBCCEEEETTSCEEESS-SSCTTSCHHHHHHEEESSCEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeecccCCCCcCCCCC-CCCCCcchHHHHHHHhccCCccChhHHHH
Confidence 99999999999999999999999999999988999999999999999995 99999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHhhHHHHHHhhcCCCCcchhhhcCCChHHHHHHHHHHHHHHhcCCCCcccccccc
Q 036741 649 LKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPV 728 (1030)
Q Consensus 649 LkIhlAN~~g~G~DK~s~deRi~wv~~n~~~I~~sA~dPl~~~~wW~~Ad~PwQfLA~C~El~~a~~~~~P~~y~S~lPV 728 (1030)
||||+||+| |+||+||+||++||++|+++|++||+|||+ .+||++||+||||||+|+||++|+++|+ +|+||+||
T Consensus 460 LkIhlAN~~--G~dK~s~~eRi~wv~~n~~~I~dsA~~Pl~-~~wW~~Ad~PwQfLA~C~El~~a~~~~~--~y~S~lPV 534 (883)
T 1msw_D 460 LKIHGANCA--GVDKVPFPERIKFIEENHENIMACAKSPLE-NTWWAEQDSPFCFLAFCFEYAGVQHHGL--SYNCSLPL 534 (883)
T ss_dssp HHHHHHHHT--TCCSSCHHHHHHHHHHTHHHHHHHHHCHHH-HCGGGGSSSHHHHHHHHHHHHHHHHHCT--TCEECCCE
T ss_pred HHHHHHHhc--CCCcCCHHHHHHHHHHHHHHHHHHhcCccc-chHHHcCCcHHHHHHHHHHHHHHHhCCC--cccccccc
Confidence 999999999 899999999999999999999999999998 5899999999999999999999999886 89999999
Q ss_pred cccCCCchhhHHHHhhCCcccccccccCCCCCcchhhhHHHHHHHHHHHHhhhcCCCC-------C------------ch
Q 036741 729 HQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAV-------F------------PD 789 (1030)
Q Consensus 729 ~qDGSCNGLQHyAAL~rD~~Ga~~VNLip~d~P~DvYs~Va~~V~~~i~~da~~d~~~-------~------------~~ 789 (1030)
||||||||||||||||||.+||++|||+|+|+|||||+.||+.|.+.+++|+.++.+. . ..
T Consensus 535 hqDgSCnGLQHyAALgrD~~ga~~VNL~psd~PqDvYs~Va~~v~~~~~~da~~g~~~~~~~~~d~~~g~i~e~~~~~~~ 614 (883)
T 1msw_D 535 AFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTK 614 (883)
T ss_dssp EEECSCHHHHHHHHHHTCTTHHHHTTCSCCSSCCCHHHHHHHHHHHHHHHHHTTSCCCCCCCSSSSSSCCSSCCCCCCHH
T ss_pred ccCCCCcHHHHHHHHhcChhhhhHhCCCCCCCCcchHHHHHHHHHHHHHHHHhcccccccccccccccccchhhcccchh
Confidence 9999999999999999999999999999999999999999999999999998765321 0 11
Q ss_pred HHHHHHhhccCccccccccceeeecccchhhHHHHHHHHHhhcCCCCchhh----hhhhhhHHHHHHHHHHHHHHHhHHH
Q 036741 790 ALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAE----LFGASCYAAKVTLTALGEMFQAARG 865 (1030)
Q Consensus 790 ~~~Ak~l~~~i~RKvVKqtVMT~vYGvT~~Gar~qI~~~L~~~g~~~d~~~----~~~~a~ylak~i~~ai~e~f~~A~~ 865 (1030)
...+++|.++|+||+|||||||+|||||++|+++||+++|+++++..++.. ...+|+|+|++||+||+++|++|+.
T Consensus 615 ~l~~~~l~~~i~RKvvKqtVMT~vYGvT~~Ga~~qI~~~l~~~~~~~~~~~~~~~~~~~a~yla~~i~~ai~~~f~~a~~ 694 (883)
T 1msw_D 615 ALAGQWLAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAAVE 694 (883)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHGGGGTCCHHHHHHHHHHHTHHHHHHTSCCCSCSSHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHhcCCCHHHhccceeeeeeCCcchhhHHHHHHHHhhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234678899999999999999999999999999999999987432111111 2378999999999999999999999
Q ss_pred HHHHHHHHHHHHHcC------------CCcEEEEcCCCCeEEEeeccCcceEEEeeeEEEE---EecCC---CcCCHHhh
Q 036741 866 IMSWLGECAKIIASE------------NQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILT---LQRET---EKVMVKRQ 927 (1030)
Q Consensus 866 im~WL~~~A~~i~~~------------~~pV~WtTPlGlpVvQ~Y~k~~~~~I~t~lq~~~---l~~~~---d~vd~rKq 927 (1030)
||+||++||++|+++ +.||.|+||+||||+|||++.++++|+|.+|.++ +..++ +++|++||
T Consensus 695 im~wL~~~a~~i~~~v~~~~~~~~~~~~~pv~W~TPlGlpV~Q~Y~~~~~~~V~t~l~~~~~i~l~~~~~~~~~~d~~Kq 774 (883)
T 1msw_D 695 AMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFLGQFRLQPTINTNKDSEIDAHKQ 774 (883)
T ss_dssp HHHHHHHHHHHHHSCEECTTTCCEEECCCCEEEECTTSCEEEECCBCCSSCCEECSSSCEECCCCSCSSCCSCCBCHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccccccCCCeEEEECCCCCEEEEEecCCCceEEEEeecceeeEeeecccccccccchHHH
Confidence 999999999999998 9999999999999999999999999999998642 33333 35999999
Q ss_pred hccCCCcchhhhhhHHHHHHHHHHHHc-CC-cEEEeeccccCCCCChhHHHHHHHHHHHHhcCc-chHHHHHHHHHHhCC
Q 036741 928 RTAFPPNFVHSLDGSHMMMTAVACRKA-GL-TFAGVHDSYWTHACDVDEMNRILREKFVELYEM-PIFENLLDSFQKSFP 1004 (1030)
Q Consensus 928 ~~af~PNFIHSLDAsHmmlta~~~~~~-gi-~fa~VHDSFwTha~dvd~m~~ilRe~FV~Lys~-~il~~l~e~f~~~~~ 1004 (1030)
++|||||||||||||||||||++|.+. |+ +|++|||||||||||||.|+++|||+||+||++ |+|++|.++|..+|+
T Consensus 775 ~~af~PNFIHSLDAsHmmlta~~~~~~~gl~~fa~VHDsfwTha~dvd~m~~~lRe~FV~lys~~~~L~~l~~~~~~~~~ 854 (883)
T 1msw_D 775 ESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESFALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLH 854 (883)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCEECSSEEEECGGGHHHHHHHHHHHHHHHHHHCCHHHHHHHHHSSTTT
T ss_pred hcCCCchhHhhHHHHHHHHHHHHHHHhcCCCceEEEeccccCCHhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999998 99 799999999999999999999999999999999 999999999999998
Q ss_pred C---CCCCCCCCCCCCCcccccCCCCCCC
Q 036741 1005 K---LVFPPLPERGDFDLREVLGSPYFFN 1030 (1030)
Q Consensus 1005 ~---~~~p~~P~~G~LDL~~Vl~S~YFF~ 1030 (1030)
. ..||++|++|+|||++|++|+|||+
T Consensus 855 ~~~~~~~p~~P~~G~ldl~~Vl~S~YfFs 883 (883)
T 1msw_D 855 ESQLDKMPALPAKGNLNLRDILESDFAFA 883 (883)
T ss_dssp CTTCCCCCCCCCCCSCCGGGGGTCSSCCC
T ss_pred hhhhhcCCCCCCCCCCCHHHHhcCCCCCC
Confidence 5 5899999999999999999999997
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3q23_A Virion RNA polymerase; protein-DNA complex; HET: DNA G2P; 1.80A {Enterobacteria phage N4} PDB: 3q0a_A* 3q22_A* 4ff1_A 4ff2_A* 4ff3_A* 4ff4_A* 3q24_A* 3c3l_A 3c46_A 3c2p_A* 2po4_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1030 | ||||
| d1mswd_ | 882 | e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [ | 0.0 |
| >d1mswd_ e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [TaxId: 10760]} Length = 882 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: T7 RNA polymerase domain: T7 RNA polymerase species: Bacteriophage T7 [TaxId: 10760]
Score = 733 bits (1894), Expect = 0.0
Identities = 218/897 (24%), Positives = 373/897 (41%), Gaps = 105/897 (11%)
Query: 192 LKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQER 251
L Q+ +E E++E +R++ + + K L + I E
Sbjct: 31 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 90
Query: 252 CRMAK-HKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQE 310
+ + + + ++ + +A IT+ + L + V A IG AIE E
Sbjct: 91 VKAKRGKRPTAFQFLQEIKPEAVAYITIKTTLACLTSADN---TTVQAVASAIGRAIEDE 147
Query: 311 VRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVR-----R 365
R + + K + + E+L K+V + KK + V +
Sbjct: 148 ARFGRIRDLEAKHFKKNVE---------------EQLNKRVGHVYKKAFMQVVEADMLSK 192
Query: 366 IVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSK 425
+ G + + W ++ VG R IE+L ++ + S Q
Sbjct: 193 GLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQ--------------------- 231
Query: 426 ETKGGSKKYGVIECNPLVLKGLER---TARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSY 482
+ IE P + + + + P +VPP WTG G ++
Sbjct: 232 NAGVVGQDSETIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRR 291
Query: 483 VMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIW---SCGGRL 539
+ ++ + R + V++A++ NT W++N +VL+V + I C
Sbjct: 292 PLALVRTHSKK-ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPVED 350
Query: 540 ADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDE 599
++R ++P+ + + L W+ V ++++ R S+R +E L A K +
Sbjct: 351 IPAIEREELPMKPEDIDMNPEALTAWKRAAAAVYRKDKARKSRRISLEFMLEQANKFANH 410
Query: 600 EGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAG 659
+ ++P+N+D+RGR Y N G+D+ +G+L A+G+ +GK G +WLKIH AN
Sbjct: 411 KAIWFPYNMDWRGRVYA-VSMFNPQGNDMTKGLLTLAKGKPIGKEGYYWLKIHGANCA-- 467
Query: 660 GVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSP 719
GVDK+ R+ F E + ++I A PLE WW + + PF LA C
Sbjct: 468 GVDKVPFPERIKFIEENHENIMACAKSPLE-NTWWAEQDSPFCFLAFCFEYAGVQH--HG 524
Query: 720 ETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRD 779
++ +P+ DGSC+G+QH++A+ RD +G AVNL+ E D+Y +A +V I+Q D
Sbjct: 525 LSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKKVNEILQAD 584
Query: 780 AQRD-------------------PAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIG 820
A + AL + L V R + K++VMT YG G
Sbjct: 585 AINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTKRSVMTLAYGSKEFG 644
Query: 821 ARDQIKRRLKERGAPMEEAELFG----ASCYAAKVTLTALGEMFQAARGIMSWLGECAKI 876
R Q+ + + +F A+ Y AK+ ++ AA M+WL AK+
Sbjct: 645 FRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAAVEAMNWLKSAAKL 704
Query: 877 IASE------------NQPVRWTTPLGLPVVQPYRKLGRHTVKTSL------QILTLQRE 918
+A+E V W TP G PV Q Y+K + + Q +
Sbjct: 705 LAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFLGQFRLQPTINTNK 764
Query: 919 TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAG--LTFAGVHDSYWTHACDVDEMN 976
++ +Q + PNFVHS DGSH+ T V + +FA +HDS+ T D +
Sbjct: 765 DSEIDAHKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESFALIHDSFGTIPADAANLF 824
Query: 977 RILREKFVELY-EMPIFENLLDSFQKSFPKLV---FPPLPERGDFDLREVLGSPYFF 1029
+ +RE V+ Y + + D F + P LP +G+ +LR++L S + F
Sbjct: 825 KAVRETMVDTYESCDVLADFYDQFADQLHESQLDKMPALPAKGNLNLRDILESDFAF 881
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1030 | |||
| d1mswd_ | 882 | T7 RNA polymerase {Bacteriophage T7 [TaxId: 10760] | 100.0 | |
| d1qtma2 | 409 | DNA polymerase I (Klenow fragment) {Thermus aquati | 88.41 | |
| d1kfsa2 | 410 | DNA polymerase I (Klenow fragment) {Escherichia co | 85.55 |
| >d1mswd_ e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: T7 RNA polymerase domain: T7 RNA polymerase species: Bacteriophage T7 [TaxId: 10760]
Probab=100.00 E-value=6.6e-186 Score=1706.25 Aligned_cols=791 Identities=28% Similarity=0.495 Sum_probs=671.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccccCC
Q 036741 191 MLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRM-AKHKVAYAPYFDQLP 269 (1030)
Q Consensus 191 ~l~~RQ~~lE~~~~~~a~~~~~~~~~~~~~~g~a~~~~~~~~ll~~w~~~l~~~I~~e~~~~~~-~~~r~~y~p~L~~L~ 269 (1030)
.|++||++||+++++.|++||++.+++++++|.+++++++++++.+|+++|+++|+++++..+. .|.++.|+|||.+|+
T Consensus 30 ~L~~rQ~~LE~ea~~~g~~R~r~~~e~~~~rg~~s~~~~g~~li~~~l~~l~~~I~~~~~~~~~~~G~~~~~~~yL~~l~ 109 (882)
T d1mswd_ 30 RLAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEEVKAKRGKRPTAFQFLQEIK 109 (882)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCTTTTTTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHhcCC
Confidence 5889999999999999999999999999999999999999999999999999999999887654 466788999999999
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccCCCcchhhHHHHHHHH
Q 036741 270 ADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRK 349 (1030)
Q Consensus 270 pe~lA~Iti~~~l~~~~~~~~~~~~~v~~~~~~IG~aVe~E~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (1030)
||++|+|||+++|++++++ ++.++++++.+||+|||+|++++++.+..++......+ +.+++
T Consensus 110 pe~lA~Itik~~ld~l~~~---~~~~~t~va~~IG~AVE~E~r~~~~~~~~~~~~~k~~~---------------~~~~k 171 (882)
T d1mswd_ 110 PEAVAYITIKTTLACLTSA---DNTTVQAVASAIGRAIEDEARFGRIRDLEAKHFKKNVE---------------EQLNK 171 (882)
T ss_dssp HHHHHHHHHHHHHHHHHHC---SCCBHHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHTS---------------HHHHH
T ss_pred HHHHHHHHHHHHHHHhcCC---CCChHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhhH---------------HHHHH
Confidence 9999999999999999874 24678899999999999999999998777654322110 11222
Q ss_pred HHHHHHHhhchHHHHH-----HhhCCCCCCCCCHHHHHHHHHHHHHHHHHHccccCCCCCCCCCCCCccCceEeeEeeee
Q 036741 350 KVTDLIKKQKLPAVRR-----IVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVS 424 (1030)
Q Consensus 350 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~W~~~~~~kvG~~Li~~l~~~~~i~~~~~~~~~~~~~~~paF~h~~~~~~ 424 (1030)
+.+...+++..+.+.. .......|.+|+..+++|||++|+++|++++++... .+ .
T Consensus 172 ~~~~~~kk~~~~~~~~~~~~~~~~~~~~w~~W~~~~r~kVG~~Lle~l~e~tg~~~~---------------~~--~--- 231 (882)
T d1mswd_ 172 RVGHVYKKAFMQVVEADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSL---------------HR--Q--- 231 (882)
T ss_dssp SCSHHHHHHHHHHHHHHSTTTTTTTTCCCCCCCTTHHHHHHHHHHHHHHHHCTTEEE---------------EC--C---
T ss_pred HhhHHHHHHHHHHHHHHHHHhhhccccccCccCHHHHHHHHHHHHHHHHHHhCCcee---------------ec--c---
Confidence 2222222222222211 112235789999999999999999999999876211 11 0
Q ss_pred cccCCCCeeEEEEEeCHHHHHHHHhhhhc--cCCC-CCCeeeCCcCcccCCCccccccCcc---eeecCChhhhHHHHhc
Q 036741 425 KETKGGSKKYGVIECNPLVLKGLERTARH--MVIP-YMPMLVPPVKWTGYDKGAHFFLPSY---VMRTHGAKQQRDTVKR 498 (1030)
Q Consensus 425 ~~~~~~~k~~gvi~~~~~~~~~l~~~~~~--~~~~-~lPMlvpP~pW~~~~~GGYL~~~s~---l~R~~~~~~q~~~l~~ 498 (1030)
..+..+++.++|.++|++.+.++..... ...| +|||||||+||++..+||||+.... ++|++.. .++.+
T Consensus 232 -~~~~~~k~~~~v~~t~~~~~~l~~~~~~~~~~~P~~lPMlvpP~pW~~~~~GGYl~~~~~~~~~~~~~~~----~~~~~ 306 (882)
T d1mswd_ 232 -NAGVVGQDSETIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRPLALVRTHSK----KALMR 306 (882)
T ss_dssp ---------CCEEEECHHHHHHHHHHHHHHTTSCCCCCCBSSCCBCCSSSBSCBSSSCCSSCCBSEECSST----THHHH
T ss_pred -ccccccCcCcceeecHHHHHHHHhhHhHHHhcCcccccccCCCccCCCCCcCCeeecCCCceeccccccH----hhhhh
Confidence 1123467788899999999888765322 2344 9999999999999999999986543 5555432 23344
Q ss_pred CCCCChhHHHHHHHhhcCcccEecHHHHHHHHHHHH-cCCCCCCCCCCCCCCCCCCCCC--ccHHHHHHHHHHHHHHHHH
Q 036741 499 TPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWS-CGGRLADLVDRNDVPLPEKPET--EDEAQLRKWQWKVRNVKKE 575 (1030)
Q Consensus 499 ~~~~~l~~v~~aLN~Lqst~w~IN~~VL~vi~~~w~-~g~~i~~l~~~~~~plP~~p~~--~d~~~~~~wk~~~~~~~~~ 575 (1030)
....+++.+|++||+||+|||+||++||+|++.+|+ .|+.++++|+....+.|++|.+ .+++++++|++..+.+++.
T Consensus 307 ~~~~~l~~v~~aLN~LQst~wrIN~~vLdv~~~~~~~~~~~~~~iP~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (882)
T d1mswd_ 307 YEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPVEDIPAIEREELPMKPEDIDMNPEALTAWKRAAAAVYRK 386 (882)
T ss_dssp TTTCCCHHHHHHHHHHHTCCEEECHHHHHHHHHHTTCSSCSSTTCCCSSCCCCCCC-----------CCTTHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHhcCCeEeCHHHHHHHHHHHhcCCCcccccCcccccccCCcccccccCHHHHHHHHHHHHHHHHH
Confidence 566789999999999999999999999999999998 5566788888776666666543 4677899999999999999
Q ss_pred HHHhhhhhhhHHHHHHHHHhhcCCCceeeccccCCCCcccCCCCCCCCCCchhhhhhhhcccCcccCccchHHHHHHHHH
Q 036741 576 NRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLAN 655 (1030)
Q Consensus 576 ~~~~~s~R~~~~~~L~iA~~f~~~~~fYfP~nlDFRGR~Yp~~~~Ln~qGsDl~RsLL~FaegkpLg~~Gl~WLkIhlAN 655 (1030)
+++.+|+||+++++|++|++|+|+++||||||+|||||+||+ |+|||||+|+|||||+||+|+|||++|++|||||+||
T Consensus 387 ~~~~~s~r~~~~~~l~~A~~~~~~~~fy~P~~~DfRGR~Y~~-~~ln~qg~D~~rsLl~Fa~~~~l~~~g~~wL~i~~An 465 (882)
T d1mswd_ 387 DKARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAV-SMFNPQGNDMTKGLLTLAKGKPIGKEGYYWLKIHGAN 465 (882)
T ss_dssp HHHHHHHHHHHHHHHTTTSSSSSCSCBBCCEEEETTSCEEES-SSSCTTSCHHHHHHEEESSCEECHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHhCCCCceeeeeeeecccccccC-CCCCCCccchhhhhhhccCCCcccchhHHHHHHHHHh
Confidence 999999999999999999999998889999999999999997 5899999999999999999999999999999999999
Q ss_pred hhcCCCCCCCHHHHHHHHHhhHHHHHHhhcCCCCcchhhhcCCChHHHHHHHHHHHHHHhcCCCCcccccccccccCCCc
Q 036741 656 LYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCN 735 (1030)
Q Consensus 656 ~~g~G~DK~s~deRi~wv~~n~~~I~~sA~dPl~~~~wW~~Ad~PwQfLA~C~El~~a~~~~~P~~y~S~lPV~qDGSCN 735 (1030)
+| |+||+||+||++||++|++.|+++|+||+.+ .||.+||+||||||+|+||+++++++ +.|+|+||||||||||
T Consensus 466 ~~--g~dK~s~~~r~~w~~~~~~~i~~~~~dp~~~-~~w~~a~~p~qfla~c~e~~~~~~~~--~~~~s~lpv~~D~scn 540 (882)
T d1mswd_ 466 CA--GVDKVPFPERIKFIEENHENIMACAKSPLEN-TWWAEQDSPFCFLAFCFEYAGVQHHG--LSYNCSLPLAFDGSCS 540 (882)
T ss_dssp HT--TCCSSCHHHHHHHHHHTHHHHHHHHHCHHHH-CGGGGSSSHHHHHHHHHHHHHHHHHC--TTCEECCCEEEECSCH
T ss_pred cc--CcchhhHHHHHHHHHHhHHHHHhhhcCcchh-hhhhhCchhHHHHHHHHHHHHHHhcC--CcccccceeeeccCcc
Confidence 99 8999999999999999999999999999975 79999999999999999999999865 6799999999999999
Q ss_pred hhhHHHHhhCCcccccccccCCCCCcchhhhHHHHHHHHHHHHhhhcCCCCC-------------------chHHHHHHh
Q 036741 736 GLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVF-------------------PDALRAKLL 796 (1030)
Q Consensus 736 GLQHyAAL~rD~~Ga~~VNLip~d~P~DvYs~Va~~V~~~i~~da~~d~~~~-------------------~~~~~Ak~l 796 (1030)
||||||||+||..||++|||+|+|+|+|||+.||+.|.+.+++|+..+.+.. .....++++
T Consensus 541 G~Qh~aal~~d~~~a~~vNL~p~~~p~DvY~~va~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 620 (882)
T d1mswd_ 541 GIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWL 620 (882)
T ss_dssp HHHHHHHHHTCTTHHHHTTCSCCSSCCCHHHHHHHHHHHHHHHHHTTSCCCCCCCSSSSSSCCSSCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHhcCCCCCCCCccHHHHHHHHHHHHHHHhhhccccccccccccccccchhhhcccchHHHHHHHh
Confidence 9999999999999999999999999999999999999999999987654321 123456788
Q ss_pred hccCccccccccceeeecccchhhHHHHHHHHHhhcCCC----CchhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 036741 797 LSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAP----MEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGE 872 (1030)
Q Consensus 797 ~~~i~RKvVKqtVMT~vYGvT~~Gar~qI~~~L~~~g~~----~d~~~~~~~a~ylak~i~~ai~e~f~~A~~im~WL~~ 872 (1030)
..+|+||+|||+|||+|||||++|+++||.++|.+.+.. ....+.+.++.|||+++|++|+++|++|+.+|+||++
T Consensus 621 ~~~i~Rk~vK~~vMT~~YG~t~~g~~~qi~~~l~~~~~~~~~~~~~~~~~~~~~yla~~i~~~i~~~~~~a~~~m~wl~~ 700 (882)
T d1mswd_ 621 AYGVTRSVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAAVEAMNWLKS 700 (882)
T ss_dssp TTCCCHHHHHHHHHGGGGTCCHHHHHHHHHHHTHHHHHHTSCCCSCSSHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred hcccchhhhccceeeeecccchhhHHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 899999999999999999999999999999998654211 1112456789999999999999999999999999999
Q ss_pred HHHHHHc------------CCCcEEEEcCCCCeEEEeeccCcceEEEeeeEE-EEE-----ecCCCcCCHHhhhccCCCc
Q 036741 873 CAKIIAS------------ENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQI-LTL-----QRETEKVMVKRQRTAFPPN 934 (1030)
Q Consensus 873 ~A~~i~~------------~~~pV~WtTPlGlpVvQ~Y~k~~~~~I~t~lq~-~~l-----~~~~d~vd~rKq~~af~PN 934 (1030)
||++|++ .+.||.||||+||||+|+|++..+++|+|.++. ..+ ...++++|++||++|||||
T Consensus 701 ~a~~i~~~~~~~~~~~~~~~~~pv~W~TP~G~pV~Q~Y~k~~~~~v~t~l~~~~~~~~~~~~~~~~~~d~~Kq~~a~~PN 780 (882)
T d1mswd_ 701 AAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFLGQFRLQPTINTNKDSEIDAHKQESGIAPN 780 (882)
T ss_dssp HHHHHHSCEECTTTCCEEECCCCEEEECTTSCEEEECCBCCSSCCEECSSSCEECCCCSCSSCCSCCBCHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhHHhcCCCeEEEECCCCCEEEEEecCCCcEEEEEEeccceEEEeeeccCCCCCCChhHhccccCcH
Confidence 9999985 477999999999999999999999999998643 222 2345679999999999999
Q ss_pred chhhhhhHHHHHHHHHHHHc-CC-cEEEeeccccCCCCChhHHHHHHHHHHHHhcC-cchHHHHHHHHHHhCCCC---CC
Q 036741 935 FVHSLDGSHMMMTAVACRKA-GL-TFAGVHDSYWTHACDVDEMNRILREKFVELYE-MPIFENLLDSFQKSFPKL---VF 1008 (1030)
Q Consensus 935 FIHSLDAsHmmlta~~~~~~-gi-~fa~VHDSFwTha~dvd~m~~ilRe~FV~Lys-~~il~~l~e~f~~~~~~~---~~ 1008 (1030)
||||||||||||||++|.+. |+ +|++|||||||||||||.|+++||++||+||+ .|+|++|.++|..++++. ++
T Consensus 781 fIHSlDAshm~~t~~~~~~~~g~~~fa~VHDsf~tha~dv~~m~~~lRe~Fv~ly~~~~~l~~~~~~~~~~~~~~~~~~~ 860 (882)
T d1mswd_ 781 FVHSQDGSHLRKTVVWAHEKYGIESFALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQLDKM 860 (882)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCEECSSEEEECGGGHHHHHHHHHHHHHHHHHHCCHHHHHHHHHSSTTTCTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCEEEEeeCCCCCcccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHcchhhcccC
Confidence 99999999999999999764 87 99999999999999999999999999999995 599999999999999874 58
Q ss_pred CCCCCCCCCCcccccCCCCCCC
Q 036741 1009 PPLPERGDFDLREVLGSPYFFN 1030 (1030)
Q Consensus 1009 p~~P~~G~LDL~~Vl~S~YFF~ 1030 (1030)
|++|++|+|||++|++|+||||
T Consensus 861 p~~P~~G~lDl~~V~~S~YfFs 882 (882)
T d1mswd_ 861 PALPAKGNLNLRDILESDFAFA 882 (882)
T ss_dssp CCCCCCCSCCGGGGGTCSSCCC
T ss_pred CCCCCCCCcCHHHhcCCcCCCC
Confidence 9999999999999999999997
|
| >d1qtma2 e.8.1.1 (A:423-831) DNA polymerase I (Klenow fragment) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
| >d1kfsa2 e.8.1.1 (A:519-928) DNA polymerase I (Klenow fragment) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|