Citrus Sinensis ID: 036782

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160------
Protein Sequence
MGGNSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQMQQEPMMPTPQIDPDDKSFLLQNNLPHQYLNFTSSSNNVIHDSLKRESIFGHDMVS
Secondary Structure (PSIPRED)
cccccccHHHHHHHcccccccccccccccccHHHHHHHHHHHccccHHHHHHccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHcccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHcccccEEccccccccHHHHHHHHHHHcHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHcccccccc
Coil and Loop (DISEMBL)
mggnspcascKLLRRRCAkdcifapyfppddphkfAIVHKVFGASNVSKMLQelpvhqradAVSSLVYEanarvrdpvygcVGAISFLQNQVSQLQMQLAVAEAEILCIQmqqepmmptpqidpddksfllqnnlphqylnftsssnnvihdslkresifghdmvs
Flexible Loop (DISEMBL)
MGGNSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQMQQEPMMPTPQIDPDDKSFLLQNNLPHQYLNFTSSSNNVIHDSLkresifghdmvs
Low Complexity Region (SEG)
MGGNSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIqmqqepmmptpqIDPDDKSFLLQNNLPHQYLNFTSSSNNVIHDSLKRESIFGHDMVS
Disordered region (IsUnstruct)
*******ASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQM******************LLQNNLPHQYLNF************************
Disordered Region (DISOPRED)
****SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEI************************************************************
Disordered Region (DISEMBL)
MGGNSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQMQQEPMMPTPQIDPDDKSFLLQNNLPHQYLNFTSSSNNVIHDSLKRESIFGHDMVS
Disordered Region (DISPRO)
***NSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQMQQEPMMPTPQI*PDDKSFLLQNNLPHQYLNFTSSSN*******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGGNSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAxxxxxxxxxxxxxxxxxxxxxILCIQMQQEPMMPTPQIDPDDKSFLLQNNLPHQYLNFTSSSNNVIHDSLKRESIFGHDMVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	166	2.2.26 [Sep-21-2011]
Q8LBW3	193	LOB domain-containing pro	yes	no	0.777	0.668	0.842	2e-60
Q9SHE9	172	LOB domain-containing pro	no	no	0.704	0.680	0.709	4e-41
Q9SK08	232	LOB domain-containing pro	no	no	0.680	0.487	0.637	3e-40
Q9LQR0	190	LOB domain-containing pro	no	no	0.680	0.594	0.646	4e-40
Q9FML4	186	Protein LATERAL ORGAN BOU	no	no	0.620	0.553	0.708	3e-39
Q9SA51	165	LOB domain-containing pro	no	no	0.638	0.642	0.682	3e-38
Q32SG3	260	LOB domain-containing pro	N/A	no	0.975	0.623	0.490	5e-38
Q8L8Q3	159	LOB domain-containing pro	no	no	0.626	0.654	0.653	3e-37
Q9AT61	268	LOB domain-containing pro	no	no	0.704	0.436	0.598	5e-37
Q9FKZ3	313	LOB domain-containing pro	no	no	0.686	0.364	0.6	1e-35

>sp|Q8LBW3|LBD12_ARATH LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2

 Score =  231 bits (588), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 112/133 (84%), Positives = 122/133 (91%), Gaps = 4/133 (3%)

Query: 3   GNSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADA 62
           G+SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADA
Sbjct: 5   GSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADA 64

Query: 63  VSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQMQQEPMMPTP-- 120
           V+SLV+EANARVRDPVYGCVGAIS+LQNQVSQLQMQLAVA+AEILCIQMQ EP + +   
Sbjct: 65  VNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQSHHQ 124

Query: 121 --QIDPDDKSFLL 131
             ++D D K+ LL
Sbjct: 125 VLELDQDHKALLL 137

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHE9|LBD4_ARATH LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1

 Score =  167 bits (422), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 83/117 (70%), Positives = 101/117 (86%)

Query: 2   GGNSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRAD 61
           G  SPCA+CKLLRRRCA+DC+F+PYFP D+P KFA VH+VFGASNV+KMLQELP+HQR D
Sbjct: 9   GAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGD 68

Query: 62  AVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQMQQEPMMP 118
           AVSS+VYEANARVRDPVYGCVGAIS LQ Q+  LQ QLA+A+AE++ ++++Q    P
Sbjct: 69  AVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTNFP 125

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK08|LBD11_ARATH LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2

 Score =  164 bits (414), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 72/113 (63%), Positives = 89/113 (78%)

Query: 5   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVS 64
           SPCA+CK+LRRRCA  C+ APYFPP DP KF I H+VFGASN+ K LQELP  QR DAV+
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 65  SLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQMQQEPMM 117
           S+VYEA AR+RDPVYGC GAI  LQ QVS+LQ QLA  + E++ +Q+Q+  ++
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLL 166

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQR0|LBD1_ARATH LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1

 Score =  163 bits (413), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 73/113 (64%), Positives = 90/113 (79%)

Query: 5   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVS 64
           SPCA+CK+LRRRCA+ C+ APYFPP DP KF I H+VFGASN+ K LQELP  QR DAV+
Sbjct: 32  SPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 91

Query: 65  SLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQMQQEPMM 117
           S+VYEA AR+RDPVYGC GAI  LQ QVS+LQ QLA A+ E++ +Q Q+  ++
Sbjct: 92  SMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSNLL 144

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FML4|LOB_ARATH Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1

 Score =  160 bits (405), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 73/103 (70%), Positives = 86/103 (83%)

Query: 4   NSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 63
           NSPCA+CK LRR+C   CIFAPYFPP++PHKFA VHK+FGASNV+K+L EL  HQR DAV
Sbjct: 9   NSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAV 68

Query: 64  SSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEI 106
           +SL YEA ARVRDPVYGCVGAIS+LQ QV +LQ +L  A A++
Sbjct: 69  NSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADL 111

Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SA51|LBD3_ARATH LOB domain-containing protein 3 OS=Arabidopsis thaliana GN=LBD3 PE=2 SV=1

 Score =  157 bits (397), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 73/107 (68%), Positives = 89/107 (83%), Gaps = 1/107 (0%)

Query: 5   SPCASCKLLRRRCAKD-CIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 63
           SPCA CKLLRR+C KD C+FAPYFP  +P+KFAIVHK+FGASNV+KMLQEL  + R+DAV
Sbjct: 13  SPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDAV 72

Query: 64  SSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQ 110
            S+VYEANAR++DPVYGCVG IS L  Q+  LQ QLA A+AE++ I+
Sbjct: 73  DSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIR 119

Arabidopsis thaliana (taxid: 3702)

>sp|Q32SG3|LBD6_MAIZE LOB domain-containing protein 6 OS=Zea mays GN=LBD6 PE=1 SV=1

 Score =  156 bits (395), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 80/163 (49%), Positives = 103/163 (63%), Gaps = 1/163 (0%)

Query: 2   GGNSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRAD 61
           G  SPCA+CK LRR+C  DC+FAPYFPPD+P KF  VH+VFGASNV+K+L EL   QR D
Sbjct: 29  GTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQRED 88

Query: 62  AVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQMQQEPMMPTPQ 121
           AV+SL YEA+ R+RDPVYGCVG IS LQ+ + QLQ  LA A+ E+   Q        T  
Sbjct: 89  AVNSLAYEADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKYQAAAAASASTAP 148

Query: 122 IDPDDKSFLLQNNLPHQYLNFTSSSNNVIHDSLKRE-SIFGHD 163
             P   +  + N +P+   NF +  ++    SL    S+FG +
Sbjct: 149 TGPQAMAEFIGNAMPNGAHNFINIGHSAALGSLGGSASVFGQE 191

Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes.

Zea mays (taxid: 4577)

>sp|Q8L8Q3|LBD25_ARATH LOB domain-containing protein 25 OS=Arabidopsis thaliana GN=LBD25 PE=2 SV=3

 Score =  154 bits (388), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 85/104 (81%)

Query: 4   NSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 63
           NSPCA+CK LRR+C  DC+FAPYFPP++P KFA VH++FGASNVSK+L E+  HQR DAV
Sbjct: 37  NSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDAV 96

Query: 64  SSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEIL 107
           +SL YEA AR++DPVYGCVGAIS LQ QV +LQ +L    A+++
Sbjct: 97  NSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLM 140

Arabidopsis thaliana (taxid: 3702)

>sp|Q9AT61|LBD13_ARATH LOB domain-containing protein 13 OS=Arabidopsis thaliana GN=LBD13 PE=2 SV=2

 Score =  153 bits (386), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 70/117 (59%), Positives = 88/117 (75%)

Query: 5   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVS 64
           +PCA+CKLLRRRCA++C F+PYF P +PHKFA VHKVFGASNVSKML E+   QR DA +
Sbjct: 51  TPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRGDAAN 110

Query: 65  SLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQMQQEPMMPTPQ 121
           SLVYEAN R+RDP+YGC+GAIS LQ+ +  LQ +L     EIL  + Q+   + + Q
Sbjct: 111 SLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEILRHKYQEATTITSLQ 167

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKZ3|LBD36_ARATH LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1

 Score =  149 bits (375), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 69/115 (60%), Positives = 88/115 (76%), Gaps = 1/115 (0%)

Query: 4   NSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 63
           +SPCA+CK LRR+C ++C+FAPYFPPD P KFA VHKVFGASNV+K+L EL  +QR DAV
Sbjct: 5   SSPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDAV 64

Query: 64  SSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQMQQEPMMP 118
           +SL YEA AR+RDPVYGCVG IS LQ+++ Q+   L  A+ E L   +  + M+P
Sbjct: 65  NSLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKE-LATYVGPQAMLP 118

Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
224098730	164	predicted protein [Populus trichocarpa]	0.987	1.0	0.891	3e-80
224112441	164	predicted protein [Populus trichocarpa]	0.981	0.993	0.886	2e-77
255559521	173	LOB domain-containing protein, putative	0.987	0.947	0.857	2e-75
356568049	165	PREDICTED: LOB domain-containing protein	0.987	0.993	0.838	9e-75
357492803	167	LOB domain-containing protein [Medicago	0.993	0.988	0.815	8e-74
359486478	212	PREDICTED: LOB domain-containing protein	0.987	0.773	0.815	4e-71
147862164	171	hypothetical protein VITISV_019140 [Viti	0.987	0.959	0.815	4e-71
224055395	163	predicted protein [Populus trichocarpa]	0.945	0.963	0.812	2e-69
147826932	163	hypothetical protein VITISV_026576 [Viti	0.945	0.963	0.830	4e-69
359478637	163	PREDICTED: LOB domain-containing protein	0.945	0.963	0.830	6e-69

>gi|224098730|ref|XP_002311246.1| predicted protein [Populus trichocarpa] gi|222851066|gb|EEE88613.1| predicted protein [Populus trichocarpa]

 Score =  302 bits (774), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 148/166 (89%), Positives = 158/166 (95%), Gaps = 2/166 (1%)

Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFP DDPHKFAIVHKVFGASNVSKMLQELPVHQRA
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 60

Query: 61  DAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQMQQEPMMPTP 120
           DAVSSLVYEANARVRDPVYGCVGAIS+LQNQVSQLQMQLAVA+AEILCIQMQ EP+MPTP
Sbjct: 61  DAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQHEPVMPTP 120

Query: 121 QIDPDDKSFLLQNNLPHQYLNFTSSSNNVIHDSLKRESIFGHDMVS 166
           Q+DP+DKSFLLQN+LP QYLNF SSSN + +DSLKRE+IF  DM+S
Sbjct: 121 QMDPEDKSFLLQNSLP-QYLNFGSSSNVIQYDSLKRETIF-EDMIS 164

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112441|ref|XP_002316191.1| predicted protein [Populus trichocarpa] gi|222865231|gb|EEF02362.1| predicted protein [Populus trichocarpa]

 Score =  293 bits (750), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 148/167 (88%), Positives = 156/167 (93%), Gaps = 4/167 (2%)

Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 60
           MGGNSPCASCKLLRRRCAKDCIF+PYFP DDPHKFAIVHKVFGASNVSKMLQELPVHQRA
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFSPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 60

Query: 61  DAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQMQQEPMMPTP 120
           DAVSSLVYEANARVRDPVYGCVGAIS+LQNQVSQLQMQLAVA+AEILCIQMQ EP+MPT 
Sbjct: 61  DAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQHEPVMPTS 120

Query: 121 QIDP-DDKSFLLQNNLPHQYLNFTSSSNNVIHDSLKRESIFGHDMVS 166
           Q+ P DDKSFLLQN+L  QYLN+ SSS N IHDSLKRESIFG DM+S
Sbjct: 121 QMGPDDDKSFLLQNSLS-QYLNYGSSS-NAIHDSLKRESIFG-DMIS 164

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559521|ref|XP_002520780.1| LOB domain-containing protein, putative [Ricinus communis] gi|223539911|gb|EEF41489.1| LOB domain-containing protein, putative [Ricinus communis]

 Score =  286 bits (732), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 150/175 (85%), Positives = 157/175 (89%), Gaps = 11/175 (6%)

Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFP DDPHKFAIVHKVFGASNVSKMLQELP+HQRA
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPIHQRA 60

Query: 61  DAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQMQQEP--MMP 118
           DAVSSLVYEANARVRDPVYGCVGAIS+LQNQVSQLQMQLAVA+AEILCIQMQ EP  +MP
Sbjct: 61  DAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPAVVMP 120

Query: 119 TPQI----DPDDKSFLL-QNNLP--HQYLNFTSSSNNVIHDSLKRESIFGHDMVS 166
           TPQI    D D KSFL  QN LP  HQYLNF SSS +VIHDSLKRESIFG D++S
Sbjct: 121 TPQIEHNDDDDAKSFLYQQNTLPHHHQYLNFASSS-SVIHDSLKRESIFG-DIIS 173

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568049|ref|XP_003552226.1| PREDICTED: LOB domain-containing protein 12-like [Glycine max]

 Score =  284 bits (726), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 140/167 (83%), Positives = 151/167 (90%), Gaps = 3/167 (1%)

Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 60
           M GNSPCASCKLLRRRC KDCIFAPYFP +DP KFA+VHKVFGASNVSKMLQELP HQR 
Sbjct: 1   MAGNSPCASCKLLRRRCTKDCIFAPYFPSNDPQKFALVHKVFGASNVSKMLQELPAHQRG 60

Query: 61  DAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQMQQEPMMPTP 120
           DAVSSLVYEA+ARVRDPVYGCVGAIS LQNQVS+LQMQLAVA+AEILCIQMQQEP+MP P
Sbjct: 61  DAVSSLVYEAHARVRDPVYGCVGAISHLQNQVSELQMQLAVAQAEILCIQMQQEPLMPNP 120

Query: 121 QI-DPDDKSFLLQNNLPHQYLNFTSSSNNVIHDSLKRESIFGHDMVS 166
           ++ DPD KS+LLQN LP QYLN+ SSS NVI+DS  RESIFGHDMVS
Sbjct: 121 EMEDPDQKSYLLQNELP-QYLNYASSS-NVIYDSFSRESIFGHDMVS 165

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357492803|ref|XP_003616690.1| LOB domain-containing protein [Medicago truncatula] gi|355518025|gb|AES99648.1| LOB domain-containing protein [Medicago truncatula]

 Score =  281 bits (718), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 137/168 (81%), Positives = 153/168 (91%), Gaps = 3/168 (1%)

Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 60
           MGGNSPCASCKLLRRRC KDC FAPYFP  +P KFAIVHKVFGASNVSKMLQELPVHQRA
Sbjct: 1   MGGNSPCASCKLLRRRCTKDCTFAPYFPSHEPQKFAIVHKVFGASNVSKMLQELPVHQRA 60

Query: 61  DAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQMQQEPMMPTP 120
           DAV+SLVYEANARVRDPVYGCVGAIS+LQNQVS+LQMQLAVA+AEILCIQMQ E ++PTP
Sbjct: 61  DAVNSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQNEQVIPTP 120

Query: 121 QIDPDDKSFLLQNNLPHQYLNF-TSSSNNVIHDSLKRE-SIFGHDMVS 166
           QI+ D KS+ +Q+ L  QYLN+ +SSSNNVIHDSLKRE +++GHDMVS
Sbjct: 121 QINQDQKSYYIQDELT-QYLNYGSSSSNNVIHDSLKRENNMYGHDMVS 167

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486478|ref|XP_002273648.2| PREDICTED: LOB domain-containing protein 12-like [Vitis vinifera]

 Score =  272 bits (695), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 141/173 (81%), Positives = 150/173 (86%), Gaps = 9/173 (5%)

Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFP DDPHKF+IVHKVFGASNVSKMLQELPVHQRA
Sbjct: 42  MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFSIVHKVFGASNVSKMLQELPVHQRA 101

Query: 61  DAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQMQQEPM-MPT 119
           DAVSSLVYEANARVRDPVYGCVGAIS+LQ QVSQLQMQLAVA+AEI CIQMQQE + +P 
Sbjct: 102 DAVSSLVYEANARVRDPVYGCVGAISYLQTQVSQLQMQLAVAQAEIFCIQMQQEQVEIPA 161

Query: 120 PQ-----IDPDD-KSFLLQNNLPHQYLNFTSSSNNVIHDSLKRESIFGHDMVS 166
                   D DD KSF L + LP +YLNF SSS +VIHDSLKRES+F HDMVS
Sbjct: 162 AHQTAAAGDGDDGKSFFLHDALP-EYLNFASSS-SVIHDSLKRESLFSHDMVS 212

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147862164|emb|CAN82602.1| hypothetical protein VITISV_019140 [Vitis vinifera]

 Score =  271 bits (694), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 141/173 (81%), Positives = 149/173 (86%), Gaps = 9/173 (5%)

Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFP DDPHKF IVHKVFGASNVSKMLQELPVHQRA
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFXIVHKVFGASNVSKMLQELPVHQRA 60

Query: 61  DAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQMQQEPM-MPT 119
           DAVSSLVYEANARVRDPVYGCVGAIS+LQ QVSQLQMQLAVA+AEI CIQMQQE + +P 
Sbjct: 61  DAVSSLVYEANARVRDPVYGCVGAISYLQTQVSQLQMQLAVAQAEIFCIQMQQEQVEIPA 120

Query: 120 PQ-----IDPDD-KSFLLQNNLPHQYLNFTSSSNNVIHDSLKRESIFGHDMVS 166
                   D DD KSF L + LP +YLNF SSS +VIHDSLKRES+F HDMVS
Sbjct: 121 AHQTXAAGDGDDGKSFFLHDALP-EYLNFASSS-SVIHDSLKRESLFSHDMVS 171

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055395|ref|XP_002298499.1| predicted protein [Populus trichocarpa] gi|222845757|gb|EEE83304.1| predicted protein [Populus trichocarpa]

 Score =  266 bits (681), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 134/165 (81%), Positives = 146/165 (88%), Gaps = 8/165 (4%)

Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 60
           M G+SPCASCKLLRRRCAKDCIFAPYFP DDPHKFAIVHK+FGASNVSKMLQE+P+HQRA
Sbjct: 1   MAGSSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKIFGASNVSKMLQEIPIHQRA 60

Query: 61  DAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQMQQEPMMPTP 120
           DAV SLVYEANARVRDPVYGCVGAIS+LQNQVSQLQMQLAVA+AEILCIQMQQEP +PT 
Sbjct: 61  DAVGSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQEPNLPT- 119

Query: 121 QIDPDDKSFLLQ-----NNLPHQYLNFTSSSNNVIHDSLKRESIF 160
           Q+D DDKS LL      N++P QY NF SSS NVI D LKRES++
Sbjct: 120 QLDQDDKSLLLASCNNFNSIP-QYFNFASSS-NVIQDPLKRESLW 162

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147826932|emb|CAN68873.1| hypothetical protein VITISV_026576 [Vitis vinifera]

 Score =  265 bits (678), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 137/165 (83%), Positives = 146/165 (88%), Gaps = 8/165 (4%)

Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 60
           MGG+SPCASCKLLRRRCAKDCIFAPYFP DDPHKFAIVHKVFGASNVSKMLQELPVHQR 
Sbjct: 1   MGGSSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVHQRV 60

Query: 61  DAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQMQQ-EPMMPT 119
           DAVSSLVYEANARVRDPVYGCVGAIS+LQNQVSQLQMQLAVA+ EILCIQMQQ EP +PT
Sbjct: 61  DAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQTEILCIQMQQEEPALPT 120

Query: 120 PQIDPDDKSFLLQ----NNLPHQYLNFTSSSNNVIHDSLKRESIF 160
            Q+D D+KS LL     NNL H YL+F SSS NVI D LKRES++
Sbjct: 121 -QMDQDEKSLLLSNNSFNNLQH-YLSFASSS-NVIQDPLKRESLW 162

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478637|ref|XP_002278121.2| PREDICTED: LOB domain-containing protein 12-like [Vitis vinifera] gi|297745838|emb|CBI15894.3| unnamed protein product [Vitis vinifera]

 Score =  265 bits (676), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 137/165 (83%), Positives = 146/165 (88%), Gaps = 8/165 (4%)

Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 60
           MGG+SPCASCKLLRRRCAKDCIFAPYFP DDPHKFAIVHKVFGASNVSKMLQELPVHQR 
Sbjct: 1   MGGSSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVHQRI 60

Query: 61  DAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQMQQ-EPMMPT 119
           DAVSSLVYEANARVRDPVYGCVGAIS+LQNQVSQLQMQLAVA+ EILCIQMQQ EP +PT
Sbjct: 61  DAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQTEILCIQMQQEEPALPT 120

Query: 120 PQIDPDDKSFLLQ----NNLPHQYLNFTSSSNNVIHDSLKRESIF 160
            Q+D D+KS LL     NNL H YL+F SSS NVI D LKRES++
Sbjct: 121 -QMDQDEKSLLLSNNSFNNLQH-YLSFASSS-NVIQDPLKRESLW 162

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
TAIR|locus:2060842	193	ASL5 [Arabidopsis thaliana (ta	0.873	0.751	0.746	4.3e-54
TAIR|locus:2197500	172	LBD4 "LOB domain-containing pr	0.765	0.738	0.661	1.9e-42
TAIR|locus:2161982	186	LOB "LATERAL ORGAN BOUNDARIES"	0.620	0.553	0.708	2.4e-37
TAIR|locus:2061828	224	LBD15 "LOB domain-containing p	0.620	0.459	0.708	1.7e-36
TAIR|locus:2032931	165	ASL9 "ASYMMETRIC LEAVES 2-like	0.632	0.636	0.688	2.1e-36
UNIPROTKB|Q32SG3	260	LBD6 "LOB domain-containing pr	0.975	0.623	0.478	3.5e-36
TAIR|locus:2026611	190	LBD1 "LOB domain-containing pr	0.620	0.542	0.689	4.4e-36
TAIR|locus:2056578	232	LBD11 "LOB domain-containing p	0.620	0.443	0.679	1.9e-35
TAIR|locus:2089184	159	LBD25 "LOB domain-containing p	0.626	0.654	0.653	1.9e-35
TAIR|locus:2034163	199	AS2 "ASYMMETRIC LEAVES 2" [Ara	0.620	0.517	0.669	3.1e-35

TAIR|locus:2060842 ASL5 [Arabidopsis thaliana (taxid:3702)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 112/150 (74%), Positives = 123/150 (82%)

Query:     3 GNSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADA 62
             G+SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADA
Sbjct:     5 GSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADA 64

Query:    63 VSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIXX----XXXXXXX 118
             V+SLV+EANARVRDPVYGCVGAIS+LQNQVSQLQMQLAVA+AEILCI             
Sbjct:    65 VNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQSHHQ 124

Query:   119 XXXIDPDDKSFLLQNNLPHQYLNFTSSSNN 148
                +D D K+ LL NN  +   N  +++NN
Sbjct:   125 VLELDQDHKALLLNNNNINN-CNTNNNNNN 153

GO:0005634 "nucleus" evidence=ISM

GO:0003677 "DNA binding" evidence=TAS

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0010016 "shoot system morphogenesis" evidence=IMP

TAIR|locus:2197500 LBD4 "LOB domain-containing protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 84/127 (66%), Positives = 100/127 (78%)

Query:     2 GGNSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRAD 61
             G  SPCA+CKLLRRRCA+DC+F+PYFP D+P KFA VH+VFGASNV+KMLQELP+HQR D
Sbjct:     9 GAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGD 68

Query:    62 AVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIXXXXXXXXXXXX 121
             AVSS+VYEANARVRDPVYGCVGAIS LQ Q+  LQ QLA+A+AE++ +            
Sbjct:    69 AVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTNFPGHG 128

Query:   122 IDPDDKS 128
             + PD  S
Sbjct:   129 LCPDSPS 135

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2161982 LOB "LATERAL ORGAN BOUNDARIES" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 73/103 (70%), Positives = 86/103 (83%)

Query:     4 NSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 63
             NSPCA+CK LRR+C   CIFAPYFPP++PHKFA VHK+FGASNV+K+L EL  HQR DAV
Sbjct:     9 NSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAV 68

Query:    64 SSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEI 106
             +SL YEA ARVRDPVYGCVGAIS+LQ QV +LQ +L  A A++
Sbjct:    69 NSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADL 111

GO:0005634 "nucleus" evidence=ISM

GO:0010199 "organ boundary specification between lateral organs and the meristem" evidence=IMP

TAIR|locus:2061828 LBD15 "LOB domain-containing protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 73/103 (70%), Positives = 85/103 (82%)

Query:     5 SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVS 64
             +PCA+CKLLRRRCA++C F+PYF P +PHKFA VHKVFGASNVSKML E+P  QRADA +
Sbjct:    44 TPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAAN 103

Query:    65 SLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEIL 107
             SLVYEAN R+RDPVYGC+GAIS LQ QV  LQ +L    +EIL
Sbjct:   104 SLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEIL 146

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2032931 ASL9 "ASYMMETRIC LEAVES 2-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 73/106 (68%), Positives = 88/106 (83%)

Query:     5 SPCASCKLLRRRCAKD-CIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 63
             SPCA CKLLRR+C KD C+FAPYFP  +P+KFAIVHK+FGASNV+KMLQEL  + R+DAV
Sbjct:    13 SPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDAV 72

Query:    64 SSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCI 109
              S+VYEANAR++DPVYGCVG IS L  Q+  LQ QLA A+AE++ I
Sbjct:    73 DSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHI 118

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

UNIPROTKB|Q32SG3 LBD6 "LOB domain-containing protein 6" [Zea mays (taxid:4577)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 78/163 (47%), Positives = 101/163 (61%)

Query:     2 GGNSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRAD 61
             G  SPCA+CK LRR+C  DC+FAPYFPPD+P KF  VH+VFGASNV+K+L EL   QR D
Sbjct:    29 GTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQRED 88

Query:    62 AVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIXXXXXXXXXXXX 121
             AV+SL YEA+ R+RDPVYGCVG IS LQ+ + QLQ  LA A+ E+               
Sbjct:    89 AVNSLAYEADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKYQAAAAASASTAP 148

Query:   122 IDPDDKSFLLQNNLPHQYLNFTSSSNNVIHDSLKRE-SIFGHD 163
               P   +  + N +P+   NF +  ++    SL    S+FG +
Sbjct:   149 TGPQAMAEFIGNAMPNGAHNFINIGHSAALGSLGGSASVFGQE 191

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2026611 LBD1 "LOB domain-containing protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 71/103 (68%), Positives = 84/103 (81%)

Query:     5 SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVS 64
             SPCA+CK+LRRRCA+ C+ APYFPP DP KF I H+VFGASN+ K LQELP  QR DAV+
Sbjct:    32 SPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 91

Query:    65 SLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEIL 107
             S+VYEA AR+RDPVYGC GAI  LQ QVS+LQ QLA A+ E++
Sbjct:    92 SMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMV 134

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2056578 LBD11 "LOB domain-containing protein 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 70/103 (67%), Positives = 82/103 (79%)

Query:     5 SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVS 64
             SPCA+CK+LRRRCA  C+ APYFPP DP KF I H+VFGASN+ K LQELP  QR DAV+
Sbjct:    54 SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query:    65 SLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEIL 107
             S+VYEA AR+RDPVYGC GAI  LQ QVS+LQ QLA  + E++
Sbjct:   114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELV 156

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2089184 LBD25 "LOB domain-containing protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 68/104 (65%), Positives = 85/104 (81%)

Query:     4 NSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 63
             NSPCA+CK LRR+C  DC+FAPYFPP++P KFA VH++FGASNVSK+L E+  HQR DAV
Sbjct:    37 NSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDAV 96

Query:    64 SSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEIL 107
             +SL YEA AR++DPVYGCVGAIS LQ QV +LQ +L    A+++
Sbjct:    97 NSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLM 140

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2034163 AS2 "ASYMMETRIC LEAVES 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 69/103 (66%), Positives = 85/103 (82%)

Query:     4 NSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 63
             NSPCA+CK LRR+C  +C+FAPYFPPD P KFA VHKVFGASNV+K+L EL   QR DAV
Sbjct:     7 NSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQREDAV 66

Query:    64 SSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEI 106
             +SL YEA+ R+RDPVYGCVG IS LQ+Q+ QLQ+ L+ A++E+
Sbjct:    67 NSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSEL 109

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009799 "specification of symmetry" evidence=IMP

GO:0009954 "proximal/distal pattern formation" evidence=IGI

GO:0048441 "petal development" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0005654 "nucleoplasm" evidence=IDA

GO:0009943 "adaxial/abaxial axis specification" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LBW3	LBD12_ARATH	No assigned EC number	0.8421	0.7771	0.6683	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_VIII0894 hypothetical protein (164 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	166
pfam03195	101	pfam03195, DUF260, Protein of unknown function DUF	3e-58

>gnl|CDD|190559 pfam03195, DUF260, Protein of unknown function DUF260

 Score =  176 bits (448), Expect = 3e-58
 Identities = 62/101 (61%), Positives = 80/101 (79%)

Query: 6   PCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSS 65
           PCA+CK LRR+C  DC+ APYFP + P +FA VHK+FGASNV+K+L+ LP  QR DA+ S
Sbjct: 1   PCAACKHLRRKCPPDCVLAPYFPAEQPARFANVHKLFGASNVTKLLKALPPEQRDDAMRS 60

Query: 66  LVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEI 106
           L+YEA+AR RDPVYGCVG I  LQ Q+ QLQ +LA+ +A++
Sbjct: 61  LLYEADARARDPVYGCVGVIWSLQQQLEQLQAELALVKAQL 101

Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	166
PF03195	101	DUF260: Protein of unknown function DUF260; InterP	100.0
COG3416	233	Uncharacterized protein conserved in bacteria [Fun	81.78

>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function

Probab=100.00  E-value=1.3e-51  Score=309.85  Aligned_cols=101  Identities=69%  Similarity=1.186  Sum_probs=99.5

Q ss_pred             CChhhhhhhcCCCCCCccCCCCCCCChhhHHHHHHhhchhhHHHHHhcCCCcchhHHHHHHHHHhhhcccCCCCcchHHH
Q 036782            6 PCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAI   85 (166)
Q Consensus         6 ~CAACK~lRRrC~~~C~~APyFPa~~~~~F~~vhkvFG~snv~kmL~~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I   85 (166)
                      +|||||||||||+++|+||||||++++++|++||||||++||+|||+++|+++|+++|+||+|||++|.+||||||+|+|
T Consensus         1 ~CaaCk~lRr~C~~~C~laPyFP~~~~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~i   80 (101)
T PF03195_consen    1 PCAACKHLRRRCSPDCVLAPYFPADQPQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGII   80 (101)
T ss_pred             CChHHHHHhCCCCCCCcCCCCCChhHHHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 036782           86 SFLQNQVSQLQMQLAVAEAEI  106 (166)
Q Consensus        86 ~~Lq~qi~~lq~eL~~~q~el  106 (166)
                      +.|++||.++++||+.++++|
T Consensus        81 ~~L~~ql~~~~~el~~~~~~l  101 (101)
T PF03195_consen   81 SQLQQQLQQLQAELALVRAQL  101 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHccC
Confidence            999999999999999999875

The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].

>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.78  E-value=5.5  Score=34.64  Aligned_cols=64  Identities=19%  Similarity=0.225  Sum_probs=55.9

Q ss_pred             HHHHhcCCCcchhHHHHHHHHHhhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036782           48 SKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQM  111 (166)
Q Consensus        48 ~kmL~~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~~~~~  111 (166)
                      ..-|+......|+..+..||-||-++.-|--|=-+-.|..+++-|..++.+|+.++.+|+.++.
T Consensus        13 f~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~   76 (233)
T COG3416          13 FHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQA   76 (233)
T ss_pred             HHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3345666677899999999999999999999999999999999999999999999998887765

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	166
4dzn_A	33	Coiled-coil peptide CC-PIL; de novo protein; HET:	82.98

>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B

Probab=82.98  E-value=2  Score=25.87  Aligned_cols=28  Identities=25%  Similarity=0.492  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036782           83 GAISFLQNQVSQLQMQLAVAEAEILCIQ  110 (166)
Q Consensus        83 G~I~~Lq~qi~~lq~eL~~~q~el~~~~  110 (166)
                      |.|..|+++|..|+.|++..+-||+.+.
T Consensus         2 geiaalkqeiaalkkeiaalkfeiaalk   29 (33)
T 4dzn_A            2 GEIAALKQEIAALKKEIAALKFEIAALK   29 (33)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788999999999999999999988654

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00