Citrus Sinensis ID: 036820

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-
Protein Sequence
MDLVMGSSSFKQPLLHFPSSSSSFYSQSSLLLCTNNARTKRRNRLSAMASMRPGDPKDNIFTRRKTILLVGISVLPLLNLRARALDGLAPRSGVLGALYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSKTLVNDENPRKVEDDNKVPVTAKKTTRRRKSNSQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccHHcccccHHHHHHHcHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccEEccccccccccccccccccccccccccEccccccccccccccHHHccccccccHHHHHHHHHHHEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mdlvmgsssfkqpllhfpsssssfysqssLLLCTNNARTKRRNRLSamasmrpgdpkdnifTRRKTILLVGISVLPLLNLRARAldglaprsgVLGALYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINssktlvndenprkveddnkvpvtakkttrrrksnsq
Flexible Loop (DISEMBL)
MDLVMGSSSFKQPLLHFPSSSSSFYSQSSLLLCTNNARTKRRNRlsamasmrpgdpkdnifTRRKTILLVGISVLPLLNLRARALDGLAPRSGVLGALYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQtsllkfgedkrtleEERKQKldrieglqdkiNLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARassllverddskqkLEAVQKEykelklssenetasnakrlreKKEELHQLKEKLELTLDEACENRATIakftqekdDLRKMLDNElgnvknlkyELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNvsheleataenrdsLRKELVNIYKKAeatandlkeQKEIVSSLNKELQAlekqtskdkearkSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSianesrenmeDAHNLVMRLGQERKSLDKRSKKLEEELAsakgeilrlrsqinssktlvndenprkveddnkvpvtakkttrrrksnsq
Low Complexity Region (SEG)
MDLVMGSSSFKqpllhfpsssssfysqsslllCTNNARTKRRNRLSAMASMRPGDPKDNIFTRRKTILLVGISVLPLLNLRARALDGLAPRSGVLGALYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAkrlrekkeelhqlkeklelTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYelqitqetlettRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSKTLVNDENPRKVEDDNKVPVTAKKTTRRRKSNSQ
Disordered region (IsUnstruct)
***********************************************************IFTRRKTILLVGISVLPLLNLRARALDGLAPRSGVLGALYALTQNE******TLEY******************************************************************RFIEELRIEIDSLQTSLL***********************************************************************************************************************************C***ATIAKF**************LGNVKNLKYELQI*************************************************************AGELFA*************************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
***************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
*********FKQPLLHFPSSSSSFYSQSSLLLCTNNARTKRRNRLSAMASMRPGDPKDNIFTRRKTILLVGISVLPLLNLRARALDGLAPRSGVLGALYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFE*****************KEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREK*************KETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALE****************LEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSKTLVNDENPRKVEDDNKVPV**************
Disordered Region (DISPRO)
******S*SFKQPLLHFPSSSSSFYSQSSLLLCTNN******NRLSA******GDPKDNIFTRRKTILLVGISVLPLLNLRARALDGLAPRSGVLGALYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSKTLVNDENPRKVEDDNKVPVTAK***********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDLVMGSSSFKQPLLHFPSSSSSFYSQSSLLLCTNNARTKRRNRLSAMASMRPGDPKDNIFTRRKTILLVGISVLPLLNLRARALDGLAPRSGVLGALYALTQNEKKATDATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxISGLGKExxxxxxxxxxxxxxxxxxxxxLLKFGEDxxxxxxxxxxxxxxxxxxxxxxxxxxxxLREKDDGxxxxxxxxxxxxxxxxxxxxxxxxxxxxARxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNxxxxxxxxxxxxxxxxxxxxxxxxxxxxRATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLGNSLDEAKRSGEVLAGExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHNLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxINSSKTLVNDENPRKVEDDNKVPVTAKKTTRRRKSNSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	651	2.2.26 [Sep-21-2011]
Q9M7J4	722	MAR-binding filament-like	N/A	no	0.987	0.890	0.486	1e-165
P93203	697	MAR-binding filament-like	N/A	no	0.946	0.883	0.463	1e-144
Q9LW85	726	MAR-binding filament-like	yes	no	0.992	0.889	0.429	1e-131
Q9WVQ0	1022	Polyamine-modulated facto	yes	no	0.325	0.207	0.282	0.0002
Q6P5D4	1140	Centrosomal protein of 13	no	no	0.325	0.185	0.239	0.0005

>sp|Q9M7J4|MFP1_TOBAC MAR-binding filament-like protein 1-1 OS=Nicotiana tabacum GN=MFP1-1 PE=2 SV=1

 Score =  583 bits (1504), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 349/718 (48%), Positives = 486/718 (67%), Gaps = 75/718 (10%)

Query: 5   MGSSSFKQPLLHFPSSSSSFYSQ---SSLLLCTNNARTKRRNRLSAMASMRPGDPKDNIF 61
           MGSS F Q  L     SSS  S    + LL    NA+ K + ++ AMA +   + K++ F
Sbjct: 1   MGSSCFPQSPLSHSLFSSSSLSSSQFTPLLFSPRNAQ-KCKKKMPAMACIHSENQKESEF 59

Query: 62  TRRKTILLVGISVLPLLNLRARALDGLA--------PR---------------------- 91
             R+TIL VG SVLPLL+LRA A +GL+        P+                      
Sbjct: 60  CSRRTILFVGFSVLPLLSLRANAFEGLSVDSQVKAQPQKEETEQTIQGNAENPFFSLLNG 119

Query: 92  -----SGVLGALYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRT 146
                SGVLG+LYAL +NEK  +DAT+E MK +LKEKEA  VS+EK F+S+L NE++ R 
Sbjct: 120 LGVFGSGVLGSLYALARNEKAVSDATIESMKNKLKEKEATFVSMEKKFQSELLNERDIRN 179

Query: 147 KQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKR 206
            QLK A EE+Q L+N+LNSA +T++ LG+ELQ EKR  EEL ++I+ LQ +L++  EDK+
Sbjct: 180 NQLKRAGEERQALVNQLNSAKSTVTNLGQELQKEKRIAEELIVQIEGLQNNLMQMKEDKK 239

Query: 207 TLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNE- 265
            L+EE K+KLD I+ LQ+KI LL+ E+++K+  +Q  +S L +KE+E+  L+S+Y++++ 
Sbjct: 240 KLQEELKEKLDLIQVLQEKITLLTTEIKDKEASLQSTTSKLAEKESEVDKLSSMYQESQD 299

Query: 266 --------------------------------LNARASSLLVERDDSKQKLEAVQKEYKE 293
                                           LN R +SLLVERD+SK++L+A+QKEY E
Sbjct: 300 QLMNLTSEIKELKVEVQKRERELELKRESEDNLNVRLNSLLVERDESKKELDAIQKEYSE 359

Query: 294 LKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDN 353
            K  SE + AS+AK L E+++ LHQL+E+L    DE  +N   IA  TQEK++LR+MLD 
Sbjct: 360 FKSISEKKVASDAKLLGEQEKRLHQLEEQLGTASDEVRKNNVLIADLTQEKENLRRMLDA 419

Query: 354 ELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHT 413
           EL N+  LK E+Q+TQETLE +R++ASD+ +QL+QS+  C+ LE E+S+++ E  E + +
Sbjct: 420 ELENISKLKLEVQVTQETLEKSRSDASDIAQQLQQSRHLCSKLEAEVSKLQMELEETRTS 479

Query: 414 LGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKK 473
           L  ++DE KR  E+LA EL   +E+LKK +EE+  +SHEL A  EN D+L+ ELV++YKK
Sbjct: 480 LRRNIDETKRGAELLAAELTTTRELLKKTNEEMHTMSHELAAVTENCDNLQTELVDVYKK 539

Query: 474 AEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALEL 533
           AE  A++LK++K IV +L KEL  LE Q +++KE+RK+LE +LE AT+SLDEMNRNA  L
Sbjct: 540 AERAADELKQEKNIVVTLEKELTFLEAQITREKESRKNLEEELERATESLDEMNRNAFAL 599

Query: 534 SKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRS 593
           +K LE ANS IS+LEDE+ VL KS++EQK I+ ESREN+EDAH+LVM+LG+ER+SL+KR+
Sbjct: 600 AKELELANSHISSLEDEREVLQKSVSEQKQISQESRENLEDAHSLVMKLGKERESLEKRA 659

Query: 594 KKLEEELASAKGEILRLRSQINSSKTLVNDENPRKVEDDNKVPVTAKKTTRRRKSNSQ 651
           KKLE+E+ASAKGEILRLR+Q+NS K  VN+E   KVE   K  VT K+ TRRRK+ +Q
Sbjct: 660 KKLEDEMASAKGEILRLRTQVNSVKAPVNNEE--KVEAGEKAAVTVKR-TRRRKTATQ 714

Binds DNA. Interacts with chromatin via matrix attachment regions (MARs). Likely to participate in nuclear architecture by connecting chromatin with the nuclear matrix and potentially with the nuclear envelope.
Nicotiana tabacum (taxid: 4097)

>sp|P93203|MFP1_SOLLC MAR-binding filament-like protein 1 OS=Solanum lycopersicum GN=MFP1 PE=1 SV=1

 Score =  512 bits (1318), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 318/686 (46%), Positives = 457/686 (66%), Gaps = 70/686 (10%)

Query: 5   MGSSSFKQPLLHFPSSSSSFYSQSSLLLCTNNARTKRRNRLSAMASMRPGDPKDNIFTRR 64
           M +S F  P     SSS      + LL C  N +  R+ R   MASM   + K++    R
Sbjct: 1   MATSCF--PPFSASSSSLCSSQFTPLLSCPRNTQICRKKR-PVMASMHSENQKESNVCNR 57

Query: 65  KTILLVGISVLPLLNLRARALDGLA------PR--------------------------- 91
           ++IL VG SVLPLLNLRARAL+GL+      P+                           
Sbjct: 58  RSILFVGFSVLPLLNLRARALEGLSTDSQAQPQKEETEQTIQGSAGNPFVSLLNGLGVVG 117

Query: 92  SGVLGALYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKS 151
           SGVLG+LYAL +NEK  +DAT+E MK +LK+KE A VS++K FES+L +E+E R K ++ 
Sbjct: 118 SGVLGSLYALARNEKAVSDATIESMKNKLKDKEDAFVSMKKQFESELLSEREDRNKLIRR 177

Query: 152 AKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEE 211
             EE+Q L+N+L SA TT+  LG+ELQNEK+  E+L+ EI  LQ  L+   EDK+ L+EE
Sbjct: 178 EGEERQALVNQLKSAKTTVISLGQELQNEKKLAEDLKFEIKGLQNDLMNTKEDKKKLQEE 237

Query: 212 RKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNE------ 265
            K+KLD I+ L++KI LL+ E+++K+  ++  +S L +KE+E+ +L+ +Y+Q++      
Sbjct: 238 LKEKLDLIQVLEEKITLLTTEIKDKEVSLRSNTSKLAEKESEVNSLSDMYQQSQDQLMNL 297

Query: 266 ---------------------------LNARASSLLVERDDSKQKLEAVQKEYKELKLSS 298
                                      LN + +SLL+ERD+SK++L A+QKEY E K +S
Sbjct: 298 TSEIKELKDEIQKRERELELKCVSEDNLNVQLNSLLLERDESKKELHAIQKEYSEFKSNS 357

Query: 299 ENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNV 358
           + + AS+A  L E+++ LHQL+E+L   L EA +N   IA  T+EK++LR+M+D EL NV
Sbjct: 358 DEKVASDAT-LGEQEKRLHQLEEQLGTALSEASKNEVLIADLTREKENLRRMVDAELDNV 416

Query: 359 KNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSL 418
             LK E+++TQE+LE +R+E SD+  QL+Q +D  + LE E+S+++ E  E + +L  ++
Sbjct: 417 NKLKQEIEVTQESLENSRSEVSDITVQLEQLRDLSSKLEREVSKLQMELEETRASLQRNI 476

Query: 419 DEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATA 478
           DE K S E+LA EL   KE+LKK +EE+  +S EL A +ENRDSL+ ELVN+YKK E T 
Sbjct: 477 DETKHSSELLAAELTTTKELLKKTNEEMHTMSDELVAVSENRDSLQTELVNVYKKREHTR 536

Query: 479 NDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLE 538
           N+LK++K IV +L +EL+ LE Q +++KE RKSLE +LE+AT+SLDE+NRN L L++ LE
Sbjct: 537 NELKQEKTIVRTLEEELKFLESQITREKELRKSLEDELEKATESLDEINRNVLALAEELE 596

Query: 539 KANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEE 598
            A S+ S+LEDE+ V  +S++EQK I+ E++EN+EDAH+LVM+LG+ER+SL+KR+KKLE+
Sbjct: 597 LATSRNSSLEDEREVHRQSVSEQKQISQEAQENLEDAHSLVMKLGKERESLEKRAKKLED 656

Query: 599 ELASAKGEILRLRSQINSSKTLVNDE 624
           E+A+AKGEILRLRSQINS K  V DE
Sbjct: 657 EMAAAKGEILRLRSQINSVKAPVEDE 682

Binds DNA. Interacts with chromatin via matrix attachment regions (MARs). Likely to participate in nuclear architecture by connecting chromatin with the nuclear matrix and potentially with the nuclear envelope.

Solanum lycopersicum (taxid: 4081)

>sp|Q9LW85|MFP1_ARATH MAR-binding filament-like protein 1 OS=Arabidopsis thaliana GN=MFP1 PE=1 SV=2

 Score =  468 bits (1204), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 313/728 (42%), Positives = 456/728 (62%), Gaps = 82/728 (11%)

Query: 1   MDLVMGSSSFKQPL-LH--------FPSSSSSFYSQSSLLLCTNNARTKRRNRLSAMASM 51
           M  ++G S F   + LH          SSSS   SQ  LL  +N A+ KRR    A  + 
Sbjct: 1   MGFLIGGSCFVPSVPLHSRFLSSPSSSSSSSPSSSQFGLLCSSNVAKFKRRRPTLASLNQ 60

Query: 52  RPGDPKDNIFTRRKTILLVGISVLPLLNLRARAL-----------------------DGL 88
             G   D    +R+  LLVGISVLP L LR+ AL                       +G 
Sbjct: 61  EDGYEYDVASAKRRAFLLVGISVLPFLQLRSPALADERGNEIKTSKVDLETEVAVVSEGT 120

Query: 89  APR-------------SGVLGALYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFE 135
           +P              +GVLGALYAL + + KA + T+E +K +LK++E A+V  EKDFE
Sbjct: 121 SPNPFLALLNGLGIFSAGVLGALYALARQDTKAAEETIESLKNQLKDRERALVLKEKDFE 180

Query: 136 SKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQ 195
           +KLQ+EQE+R K+++ AKEEQ  L+N+LNSA   ++ LG+EL +EK+  E+L+ +I+SL+
Sbjct: 181 AKLQHEQEERKKEVEKAKEEQLSLINQLNSAKDLVTELGRELSSEKKLCEKLKDQIESLE 240

Query: 196 TSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELK 255
            SL K GEDK  LE + ++KLD +EGLQD+INLLSLEL++ ++  Q+ ++SL +KE ELK
Sbjct: 241 NSLSKAGEDKEALETKLREKLDLVEGLQDRINLLSLELKDSEEKAQRFNASLAKKEAELK 300

Query: 256 NLNSVYKQN---------------------------------ELNARASSLLVERDDSKQ 282
            LNS+Y Q                                  ELN R ++L+ E++   Q
Sbjct: 301 ELNSIYTQTSRDLAEAKLEIKQQKEELIRTQSELDSKNSAIEELNTRITTLVAEKESYIQ 360

Query: 283 KLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQ 342
           KL+++ K+Y  LKL+SE + A++A+ +  K++E+ QL E L+  LD+  +++  +A  T+
Sbjct: 361 KLDSISKDYSALKLTSETQAAADAELISRKEQEIQQLNENLDRALDDVNKSKDKVADLTE 420

Query: 343 EKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISR 402
           + +D ++MLD EL  VKNL++EL+ T++TL+ +R+  SDLE  L +S+  C+ LE+E++ 
Sbjct: 421 KYEDSKRMLDIELTTVKNLRHELEGTKKTLQASRDRVSDLETMLDESRALCSKLESELAI 480

Query: 403 IRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDS 462
           +  E+ E K     +LD  K+  E+ A EL   K++ ++  +EL+ V+HEL+ ++    S
Sbjct: 481 VHEEWKEAKERYERNLDAEKQKNEISASELALEKDLRRRVKDELEGVTHELKESSVKNQS 540

Query: 463 LRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKS 522
           L+KELV IYKK E +  +L+E+K+ V SLNKE++ +EKQ   ++EARKSLETDLEEA KS
Sbjct: 541 LQKELVEIYKKVETSNKELEEEKKTVLSLNKEVKGMEKQILMEREARKSLETDLEEAVKS 600

Query: 523 LDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRL 582
           LDEMN+N   LS+ LEK N+  SNLEDEK VL +SL E K+ + E++EN+EDAH LVM L
Sbjct: 601 LDEMNKNTSILSRELEKVNTHASNLEDEKEVLQRSLGEAKNASKEAKENVEDAHILVMSL 660

Query: 583 GQERKSLDKRSKKLEEELASAKGEILRLRSQINSSKTLVNDENPRKVEDDNKVPVTAKKT 642
           G+ER+ L+K+ KKLEE+L SAKGEILR+RSQ +S K + + +N  K   DN   VT KK 
Sbjct: 661 GKEREVLEKKVKKLEEDLGSAKGEILRMRSQPDSVKAVNSTDNKEK--SDN--TVTVKKV 716

Query: 643 TRRRKSNS 650
            RRRKS++
Sbjct: 717 VRRRKSST 724

Binds DNA. Interacts with chromatin via matrix attachment regions (MARs). Likely to participate in nuclear architecture by connecting chromatin with the nuclear matrix and potentially with the nuclear envelope.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9WVQ0|PMFBP_MOUSE Polyamine-modulated factor 1-binding protein 1 OS=Mus musculus GN=Pmfbp1 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 117/244 (47%), Gaps = 32/244 (13%)

Query: 381 DLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRS-----GEVLAGELFAA 435
           +LEK L Q ++S  + E E+ +++    E    L  SL EA++S      E L  E+   
Sbjct: 426 ELEKNLMQVQNSLREKEAELEKLQCTTKE----LDTSLQEARQSTSKIDCEALRAEIQKL 481

Query: 436 KEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKEL 495
           K+ L++A E+L+     L  + E        L + ++K E      K+++E++  L  +L
Sbjct: 482 KDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQL 541

Query: 496 QALEKQTSKDKEARKSLETDLEEATKSLDEMNRNAL-ELSKNLEKANSQISNLEDEKAVL 554
             L+K++SK +E RK                NR  L ELS  L +   ++SN E EK++L
Sbjct: 542 HKLQKESSKIEEERKH---------------NRQRLQELSSELSEGQRRLSNAEKEKSLL 586

Query: 555 YKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQI 614
            K+L       +E  + +++  +      Q+++ L    +KLEEEL   KG +   R Q+
Sbjct: 587 QKTL-------DEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQL 639

Query: 615 NSSK 618
             SK
Sbjct: 640 KKSK 643

May play a role in sperm morphology especially the sperm tail and consequently affect fertility. May also be involved in the general organization of cellular cytoskeleton.

Mus musculus (taxid: 10090)

>sp|Q6P5D4|CP135_MOUSE Centrosomal protein of 135 kDa OS=Mus musculus GN=Cep135 PE=1 SV=1

 Score = 47.0 bits (110), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 113/221 (51%), Gaps = 9/221 (4%)

Query: 358 VKNLKYELQ----ITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHT 413
           ++N KYELQ    + +ET+E+  N++    ++L       +  +TE++ +R     V   
Sbjct: 620 LENEKYELQSKMLMMKETVESLENKSKLQAQKLSHVTGDSSHQKTEMTSLRI----VSEQ 675

Query: 414 LGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKK 473
           L  SLD+ +    +  GEL +A+E +K   ++L+N+SH +   +E   +++K +  + K+
Sbjct: 676 LQRSLDDCQHRLSIKRGELESAQEQIKMLEQKLENLSHRMTVQSEETHAMKKTIGVMDKE 735

Query: 474 AEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALEL 533
            +     + E+ E +++L + L + EK  ++ K      ET L +  ++L   +R    L
Sbjct: 736 KDFLQETVDEKTEKIANLQESLLSKEKVIAQLKVTVAEYETSLNQLQETLTTRDREINSL 795

Query: 534 SKNLEKANSQISNLEDEKAVLYKSLTE-QKSIANESRENME 573
            + L+ ++ ++ ++   + + +K     Q  +A  +REN E
Sbjct: 796 RRQLDASHKELDDVGKSREISFKENRRLQDDLATMARENQE 836

Centrosomal protein involved in centriole biogenesis. Acts as a scaffolding protein during early centriole biogenesis. Also required for centriole-centriole cohesion during interphase by acting as a platform protein for CEP250 at the centriole.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	651
147800073	719	hypothetical protein VITISV_043806 [Viti	0.990	0.897	0.539	0.0
225442667	715	PREDICTED: MAR-binding filament-like pro	0.984	0.896	0.541	0.0
297743294	712	unnamed protein product [Vitis vinifera]	0.970	0.887	0.539	0.0
224058829	680	predicted protein [Populus trichocarpa]	0.917	0.877	0.558	1e-180
14423763	722	RecName: Full=MAR-binding filament-like	0.987	0.890	0.486	1e-164
449448192	734	PREDICTED: MAR-binding filament-like pro	0.998	0.885	0.460	1e-152
255574564	654	ATP binding protein, putative [Ricinus c	0.878	0.874	0.543	1e-150
357471881	768	MAR-binding filament-like protein 1-1 [M	0.943	0.799	0.467	1e-145
356541422	731	PREDICTED: MAR-binding filament-like pro	0.907	0.808	0.481	1e-144
356544710	738	PREDICTED: MAR-binding filament-like pro	0.983	0.867	0.457	1e-144

>gi|147800073|emb|CAN70924.1| hypothetical protein VITISV_043806 [Vitis vinifera]

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/723 (53%), Positives = 503/723 (69%), Gaps = 78/723 (10%)

Query: 1   MDLVMGSSSFKQPLL---HFPSSSSSFYSQSSLLLCTNNARTKRRNRLSAMASMRPGDPK 57
           M  VMGSS F  P L   H PSSSS        LL   +A  +R++R+   +    GD  
Sbjct: 1   MGFVMGSSCFLHPPLRHRHRPSSSSQCA-----LLYMRDAEKQRKHRVPMASLSHEGDSN 55

Query: 58  DNIFTRRKTILLVGISVLPLLNLRARALDGLA------------------------PR-- 91
           D IF +R+ +L VGISVLP L+ RARAL+ LA                        P   
Sbjct: 56  DTIFCKRRAVLFVGISVLPFLSSRARALEDLANEDHDLNTPEKNKNAEQALQEDSPPNPF 115

Query: 92  -----------SGVLGALYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQN 140
                      SGVLG+LYAL Q EK A+  T+E +K +LKE+EAAIVSLEK+F  KL N
Sbjct: 116 LSLLNGLGIFASGVLGSLYALDQKEKAASQTTIESIKTKLKEREAAIVSLEKEFGLKLLN 175

Query: 141 EQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLK 200
           E+++R KQL  AKE+ Q LMN++ SAN  I+GLG+ELQ+E+R I+EL+ +ID+LQT L K
Sbjct: 176 EEKERAKQLGKAKEDLQSLMNQVQSANDIITGLGQELQSERRLIQELKAQIDNLQTDLTK 235

Query: 201 FGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSV 260
             EDK+ LEE+ K KL+ IE LQD+INLLSLE+++K+D V+ L+SSL QKE E  NL S 
Sbjct: 236 AREDKKALEEDLKLKLESIEVLQDRINLLSLEIKDKEDNVENLNSSLAQKELEFNNLISD 295

Query: 261 YKQ---------------------------------NELNARASSLLVERDDSKQKLEAV 287
           Y Q                                 ++LNA+ +SL+VE+DDS ++L A+
Sbjct: 296 YSQTKNXLVESDLEIKGLKDELLGTQEELESKNSLVDDLNAQVNSLIVEKDDSNRQLAAL 355

Query: 288 QKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDL 347
           QKE+ +L+LSSE + A +AK   EK+ ELHQL+EKL+  L+EA ++ ATIA  TQEK+DL
Sbjct: 356 QKEFNDLRLSSEKKAALDAKLXGEKENELHQLEEKLKNALNEARKSNATIADLTQEKEDL 415

Query: 348 RKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEF 407
            K+L  EL NVKNLK+ELQITQETL+ + NEASDLEKQLKQ +D C  LE E+  + AE 
Sbjct: 416 SKLLAIELSNVKNLKHELQITQETLKASTNEASDLEKQLKQLRDLCLKLEAEVCTVLAES 475

Query: 408 AEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKEL 467
           A+ K  L  SLDEAK+SGEVLA EL   KE+LKK  +ELQ+ SHEL + +ENRDSL+KEL
Sbjct: 476 AKAKEMLQRSLDEAKQSGEVLASELMKVKELLKKTKDELQHRSHELASVSENRDSLQKEL 535

Query: 468 VNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMN 527
           V++YKKAE+ A DLKE+K+ V +LNKELQALEKQT KDKE +KSL+TDLEEATKSLDEMN
Sbjct: 536 VDVYKKAESVAQDLKEEKKAVITLNKELQALEKQTLKDKEVQKSLKTDLEEATKSLDEMN 595

Query: 528 RNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERK 587
           +    LS++LE AN+++S+LED+KA+L+ +L EQK++  E+REN+EDAHNLVMRLG+ER+
Sbjct: 596 QKVFLLSRDLEFANTRVSSLEDDKAMLHNALAEQKNVTQEARENIEDAHNLVMRLGKERE 655

Query: 588 SLDKRSKKLEEELASAKGEILRLRSQINSSKTLVNDENPRKVEDDNKVPVTAKKTTRRRK 647
           SL+KRSKKLEEELA+AKGEILRLRS+INSSKT VN++  ++VE +    V  KK+ RRRK
Sbjct: 656 SLEKRSKKLEEELAAAKGEILRLRSEINSSKTHVNNKPHQEVEAEGNAAVRVKKSGRRRK 715

Query: 648 SNS 650
           S+S
Sbjct: 716 SSS 718

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442667|ref|XP_002284745.1| PREDICTED: MAR-binding filament-like protein 1-1-like [Vitis vinifera]

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/719 (54%), Positives = 502/719 (69%), Gaps = 78/719 (10%)

Query: 5   MGSSSFKQPLLHF---PSSSSSFYSQSSLLLCTNNARTKRRNRLSAMASMRPGDPKDNIF 61
           MGSS F  P LH    PSSSS        LL   +A  +R++R+   +    GD  D IF
Sbjct: 1   MGSSCFLHPPLHHRHRPSSSSQCA-----LLYMRDAEKQRKHRVPMASLSHEGDSNDTIF 55

Query: 62  TRRKTILLVGISVLPLLNLRARALDGLA------------------------PR------ 91
            +R+ IL VGISVLP L+ RARAL+ LA                        P       
Sbjct: 56  CKRRAILFVGISVLPFLSSRARALEDLANEDHDLNTPEKNKNAEQELQEDSPPNPFLSLL 115

Query: 92  -------SGVLGALYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQ 144
                  SGVLG+LYAL Q EK A+  T+E +K +LKE+EAAIVSLEK+F  KL NE+++
Sbjct: 116 NGLGIFASGVLGSLYALDQKEKAASQTTIESIKTKLKEREAAIVSLEKEFGLKLLNEEKE 175

Query: 145 RTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGED 204
           R KQL  AKE+ Q LMN++ SAN  I+GLG+ELQ+E+R I+EL+ +ID+LQT L K  ED
Sbjct: 176 RAKQLGKAKEDLQSLMNQVQSANDIITGLGQELQSERRLIQELKAQIDNLQTDLTKARED 235

Query: 205 KRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQ- 263
           K+ LEE+ K KL+ IE LQD+INLLSLE+++K+D V+ L+SSL QKE E  NL S + Q 
Sbjct: 236 KKALEEDLKLKLESIEVLQDRINLLSLEIKDKEDNVENLNSSLAQKELEFNNLISDHSQT 295

Query: 264 --------------------------------NELNARASSLLVERDDSKQKLEAVQKEY 291
                                           ++LNA+ +SL+VE+DDS ++L A+QKE+
Sbjct: 296 KNQLVESDLEIKGLKDELLGTQEELKSKNSLVDDLNAQVNSLIVEKDDSNRQLAALQKEF 355

Query: 292 KELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKML 351
            +L+LSSE + A +AK L EK+ ELHQL+EKL+  L+EA ++ ATIA  TQEK+DL K+L
Sbjct: 356 NDLRLSSEKKAAFDAKLLGEKENELHQLEEKLKNALNEARKSNATIADLTQEKEDLSKLL 415

Query: 352 DNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVK 411
             EL NVKNLK+ELQITQETL+ + NEASDLEKQLKQ +D C  LE E+  + AE A+ K
Sbjct: 416 AIELSNVKNLKHELQITQETLKASTNEASDLEKQLKQLRDLCLKLEAEVCTVLAESAKAK 475

Query: 412 HTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIY 471
             L  SLDEAK+SGEVLA EL   KE+LKK  +ELQ+ SHEL + +ENRDSL+KELV++Y
Sbjct: 476 EMLQRSLDEAKQSGEVLASELMKVKELLKKTKDELQHRSHELASVSENRDSLQKELVDVY 535

Query: 472 KKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNAL 531
           KKAE+ A DLKE+K+ V +LNKELQALEKQT KDKE +KSL+TDLEEATKSLDEMN+   
Sbjct: 536 KKAESVAQDLKEEKKAVITLNKELQALEKQTLKDKEVQKSLKTDLEEATKSLDEMNQKVF 595

Query: 532 ELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDK 591
            LS++LE AN+++S+LED+KA+L+ +L EQK++  E+REN+EDAHNLVMRLG+ER+SL+K
Sbjct: 596 LLSRDLEFANTRVSSLEDDKAMLHNALAEQKNVTQEARENIEDAHNLVMRLGKERESLEK 655

Query: 592 RSKKLEEELASAKGEILRLRSQINSSKTLVNDENPRKVEDDNKVPVTAKKTTRRRKSNS 650
           RSKKLEEELA+AKGEILRLRS+INSSKT VN++  ++VE +    V  KK+ RRRKS+S
Sbjct: 656 RSKKLEEELAAAKGEILRLRSEINSSKTHVNNKPHQEVEAEGNAAVRVKKSGRRRKSSS 714

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743294|emb|CBI36161.3| unnamed protein product [Vitis vinifera]

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/710 (53%), Positives = 494/710 (69%), Gaps = 78/710 (10%)

Query: 1   MDLVMGSSSFKQPLLHF---PSSSSSFYSQSSLLLCTNNARTKRRNRLSAMASMRPGDPK 57
           M  VMGSS F  P LH    PSSSS        LL   +A  +R++R+   +    GD  
Sbjct: 1   MGFVMGSSCFLHPPLHHRHRPSSSSQCA-----LLYMRDAEKQRKHRVPMASLSHEGDSN 55

Query: 58  DNIFTRRKTILLVGISVLPLLNLRARALDGLA------------------------PR-- 91
           D IF +R+ IL VGISVLP L+ RARAL+ LA                        P   
Sbjct: 56  DTIFCKRRAILFVGISVLPFLSSRARALEDLANEDHDLNTPEKNKNAEQELQEDSPPNPF 115

Query: 92  -----------SGVLGALYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQN 140
                      SGVLG+LYAL Q EK A+  T+E +K +LKE+EAAIVSLEK+F  KL N
Sbjct: 116 LSLLNGLGIFASGVLGSLYALDQKEKAASQTTIESIKTKLKEREAAIVSLEKEFGLKLLN 175

Query: 141 EQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLK 200
           E+++R KQL  AKE+ Q LMN++ SAN  I+GLG+ELQ+E+R I+EL+ +ID+LQT L K
Sbjct: 176 EEKERAKQLGKAKEDLQSLMNQVQSANDIITGLGQELQSERRLIQELKAQIDNLQTDLTK 235

Query: 201 FGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSV 260
             EDK+ LEE+ K KL+ IE LQD+INLLSLE+++K+D V+ L+SSL QKE E  NL S 
Sbjct: 236 AREDKKALEEDLKLKLESIEVLQDRINLLSLEIKDKEDNVENLNSSLAQKELEFNNLISD 295

Query: 261 YKQ---------------------------------NELNARASSLLVERDDSKQKLEAV 287
           + Q                                 ++LNA+ +SL+VE+DDS ++L A+
Sbjct: 296 HSQTKNQLVESDLEIKGLKDELLGTQEELKSKNSLVDDLNAQVNSLIVEKDDSNRQLAAL 355

Query: 288 QKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDL 347
           QKE+ +L+LSSE + A +AK L EK+ ELHQL+EKL+  L+EA ++ ATIA  TQEK+DL
Sbjct: 356 QKEFNDLRLSSEKKAAFDAKLLGEKENELHQLEEKLKNALNEARKSNATIADLTQEKEDL 415

Query: 348 RKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEF 407
            K+L  EL NVKNLK+ELQITQETL+ + NEASDLEKQLKQ +D C  LE E+  + AE 
Sbjct: 416 SKLLAIELSNVKNLKHELQITQETLKASTNEASDLEKQLKQLRDLCLKLEAEVCTVLAES 475

Query: 408 AEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKEL 467
           A+ K  L  SLDEAK+SGEVLA EL   KE+LKK  +ELQ+ SHEL + +ENRDSL+KEL
Sbjct: 476 AKAKEMLQRSLDEAKQSGEVLASELMKVKELLKKTKDELQHRSHELASVSENRDSLQKEL 535

Query: 468 VNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMN 527
           V++YKKAE+ A DLKE+K+ V +LNKELQALEKQT KDKE +KSL+TDLEEATKSLDEMN
Sbjct: 536 VDVYKKAESVAQDLKEEKKAVITLNKELQALEKQTLKDKEVQKSLKTDLEEATKSLDEMN 595

Query: 528 RNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERK 587
           +    LS++LE AN+++S+LED+KA+L+ +L EQK++  E+REN+EDAHNLVMRLG+ER+
Sbjct: 596 QKVFLLSRDLEFANTRVSSLEDDKAMLHNALAEQKNVTQEARENIEDAHNLVMRLGKERE 655

Query: 588 SLDKRSKKLEEELASAKGEILRLRSQINSSKTLVNDENPRKVEDDNKVPV 637
           SL+KRSKKLEEELA+AKGEILRLRS+INSSKT VN++  ++VE +    V
Sbjct: 656 SLEKRSKKLEEELAAAKGEILRLRSEINSSKTHVNNKPHQEVEAEGNAAV 705

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058829|ref|XP_002299637.1| predicted protein [Populus trichocarpa] gi|222846895|gb|EEE84442.1| predicted protein [Populus trichocarpa]

 Score =  636 bits (1641), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 374/670 (55%), Positives = 471/670 (70%), Gaps = 73/670 (10%)

Query: 23  SFYSQSSLLLCTNNARTKRRNRLSAMASMRPGDPKDNIFTRRKTILLVGISVLPLLNLRA 82
           SF+ +++     NN  T RR  +SA   M   DP D +F +++ IL +GISVLP L LRA
Sbjct: 14  SFHVKNN---SNNNEMTGRRRVVSA--CMGQEDPMDIVFRKKRAILFLGISVLPFLQLRA 68

Query: 83  RALDGL------APR-----------------------------SGVLGALYALTQNEKK 107
           RAL+GL      AP                              +GVLGALYAL Q EKK
Sbjct: 69  RALEGLVTTTLMAPEEDQKEELAIQRYTPPNPFLSLLNGLGIFGTGVLGALYALAQKEKK 128

Query: 108 ATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSAN 167
           ATD T+E M ++LKEKEA I SLEK+FESKL NEQE++ KQ K AKEEQQ L+++LNSAN
Sbjct: 129 ATDKTVESMISKLKEKEATIESLEKNFESKLLNEQEEQMKQRKKAKEEQQFLLSQLNSAN 188

Query: 168 TTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKIN 227
           + I+GLG+EL+NEKR I ELR++ D L+T+L K GEDK+ LE+  K+KL  IE LQDKI+
Sbjct: 189 SIIAGLGQELKNEKRIIGELRVQADGLETNLSKAGEDKKALEQLLKEKLSMIEALQDKIS 248

Query: 228 LLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQ------------------------ 263
           LLS E+++K+   Q LSSSL +KE ELKNLN  ++Q                        
Sbjct: 249 LLSSEIKDKEYNAQNLSSSLAEKELELKNLNYTHEQTNGELAKACSEIKGLKDELLKNKK 308

Query: 264 ---------NELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKE 314
                    +ELN++ SSL+VERD+S ++L  +Q+EY +LK SSE + A +A  LRE++ 
Sbjct: 309 ELEMRNSVVDELNSKISSLIVERDESSRQLNTIQEEYNDLKSSSEKKAALDATLLREREY 368

Query: 315 ELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLET 374
           ELH LKEKLE+ L+EA  N+A I   T E++DLR+MLD+E+ N KNLK EL  TQE LE 
Sbjct: 369 ELHVLKEKLEVALNEASGNQARIDDLTWERNDLRRMLDDEVSNAKNLKNELHNTQEALEK 428

Query: 375 TRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFA 434
            R EASDL +QL+ S++ C +L+ E+SRI AEFAEV  TL  S+++AK+SG++LA EL A
Sbjct: 429 LREEASDLSEQLELSQNQCTELQAEVSRILAEFAEVTETLQKSVEKAKQSGDLLASELTA 488

Query: 435 AKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKE 494
            KE L+K  EELQ +S +LE   ENRDSL+KELV+ YKKAE  AN+LK +K IVSSLNKE
Sbjct: 489 MKEQLRKTKEELQVMSQDLEMVTENRDSLQKELVDAYKKAEVAANELKAEKNIVSSLNKE 548

Query: 495 LQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVL 554
           LQ LEKQ  KDKE+RKSLETDLE+ATKSLDEMNRNAL LS  LE ANS+IS++EDEK VL
Sbjct: 549 LQNLEKQMLKDKESRKSLETDLEDATKSLDEMNRNALILSGELEMANSRISSVEDEKQVL 608

Query: 555 YKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQI 614
           YKSLTEQK+ A E++ENMEDAHN+V+RLG ER+ LD++ KKLE ELASAKGEILRLRS+I
Sbjct: 609 YKSLTEQKNAAKEAQENMEDAHNIVVRLGSEREGLDRKGKKLEGELASAKGEILRLRSKI 668

Query: 615 NSSKTLVNDE 624
           NSS T VND+
Sbjct: 669 NSSNTAVNDQ 678

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14423763|sp|Q9M7J4.1|MFP1_TOBAC RecName: Full=MAR-binding filament-like protein 1-1 gi|7108715|gb|AAF36519.1|AF131231_1 MAR-binding protein MFP1 homolog [Nicotiana tabacum]

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 349/718 (48%), Positives = 486/718 (67%), Gaps = 75/718 (10%)

Query: 5   MGSSSFKQPLLHFPSSSSSFYSQ---SSLLLCTNNARTKRRNRLSAMASMRPGDPKDNIF 61
           MGSS F Q  L     SSS  S    + LL    NA+ K + ++ AMA +   + K++ F
Sbjct: 1   MGSSCFPQSPLSHSLFSSSSLSSSQFTPLLFSPRNAQ-KCKKKMPAMACIHSENQKESEF 59

Query: 62  TRRKTILLVGISVLPLLNLRARALDGLA--------PR---------------------- 91
             R+TIL VG SVLPLL+LRA A +GL+        P+                      
Sbjct: 60  CSRRTILFVGFSVLPLLSLRANAFEGLSVDSQVKAQPQKEETEQTIQGNAENPFFSLLNG 119

Query: 92  -----SGVLGALYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRT 146
                SGVLG+LYAL +NEK  +DAT+E MK +LKEKEA  VS+EK F+S+L NE++ R 
Sbjct: 120 LGVFGSGVLGSLYALARNEKAVSDATIESMKNKLKEKEATFVSMEKKFQSELLNERDIRN 179

Query: 147 KQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKR 206
            QLK A EE+Q L+N+LNSA +T++ LG+ELQ EKR  EEL ++I+ LQ +L++  EDK+
Sbjct: 180 NQLKRAGEERQALVNQLNSAKSTVTNLGQELQKEKRIAEELIVQIEGLQNNLMQMKEDKK 239

Query: 207 TLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNE- 265
            L+EE K+KLD I+ LQ+KI LL+ E+++K+  +Q  +S L +KE+E+  L+S+Y++++ 
Sbjct: 240 KLQEELKEKLDLIQVLQEKITLLTTEIKDKEASLQSTTSKLAEKESEVDKLSSMYQESQD 299

Query: 266 --------------------------------LNARASSLLVERDDSKQKLEAVQKEYKE 293
                                           LN R +SLLVERD+SK++L+A+QKEY E
Sbjct: 300 QLMNLTSEIKELKVEVQKRERELELKRESEDNLNVRLNSLLVERDESKKELDAIQKEYSE 359

Query: 294 LKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDN 353
            K  SE + AS+AK L E+++ LHQL+E+L    DE  +N   IA  TQEK++LR+MLD 
Sbjct: 360 FKSISEKKVASDAKLLGEQEKRLHQLEEQLGTASDEVRKNNVLIADLTQEKENLRRMLDA 419

Query: 354 ELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHT 413
           EL N+  LK E+Q+TQETLE +R++ASD+ +QL+QS+  C+ LE E+S+++ E  E + +
Sbjct: 420 ELENISKLKLEVQVTQETLEKSRSDASDIAQQLQQSRHLCSKLEAEVSKLQMELEETRTS 479

Query: 414 LGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKK 473
           L  ++DE KR  E+LA EL   +E+LKK +EE+  +SHEL A  EN D+L+ ELV++YKK
Sbjct: 480 LRRNIDETKRGAELLAAELTTTRELLKKTNEEMHTMSHELAAVTENCDNLQTELVDVYKK 539

Query: 474 AEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALEL 533
           AE  A++LK++K IV +L KEL  LE Q +++KE+RK+LE +LE AT+SLDEMNRNA  L
Sbjct: 540 AERAADELKQEKNIVVTLEKELTFLEAQITREKESRKNLEEELERATESLDEMNRNAFAL 599

Query: 534 SKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRS 593
           +K LE ANS IS+LEDE+ VL KS++EQK I+ ESREN+EDAH+LVM+LG+ER+SL+KR+
Sbjct: 600 AKELELANSHISSLEDEREVLQKSVSEQKQISQESRENLEDAHSLVMKLGKERESLEKRA 659

Query: 594 KKLEEELASAKGEILRLRSQINSSKTLVNDENPRKVEDDNKVPVTAKKTTRRRKSNSQ 651
           KKLE+E+ASAKGEILRLR+Q+NS K  VN+E   KVE   K  VT K+ TRRRK+ +Q
Sbjct: 660 KKLEDEMASAKGEILRLRTQVNSVKAPVNNEE--KVEAGEKAAVTVKR-TRRRKTATQ 714

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448192|ref|XP_004141850.1| PREDICTED: MAR-binding filament-like protein 1-1-like [Cucumis sativus] gi|449522536|ref|XP_004168282.1| PREDICTED: MAR-binding filament-like protein 1-1-like [Cucumis sativus]

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 335/728 (46%), Positives = 469/728 (64%), Gaps = 78/728 (10%)

Query: 1   MDLVMGSSSFKQPLLH---FP--SSSSSFYSQSSLLLCTNNARTKRRNRLSAMASMRPGD 55
           M   MGS+ F Q  L+   FP  S  S   S  S  L   N   K+R+ + A A      
Sbjct: 2   MGFAMGSTCFLQSPLYVSRFPFSSVPSCSCSSQSNSLPLRNVEGKQRSGVPA-ALRSKSY 60

Query: 56  PKDNIFTRRKTILLVGISVLPLLNLRARALDGLAPR------------------------ 91
             D+   +R+ IL +GISV P+L  +A+ALDG A                          
Sbjct: 61  SNDDGLCKRRAILFLGISVFPILQFKAQALDGSATEKTDVKAQEGNQNIELAAQIEKPPN 120

Query: 92  -------------SGVLGALYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKL 138
                        SGVLG+LYA+ Q EK A +  +E +  +LKEKE++I+S+ + ++SKL
Sbjct: 121 PFVSILNVVGVFGSGVLGSLYAVAQKEKMAAELAIESISTKLKEKESSIISMRRSYDSKL 180

Query: 139 QNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSL 198
           Q+EQE+  KQL+ AKEEQ  L+N+LN+AN TI  LG+E++NEK  IEEL + I +LQ  L
Sbjct: 181 QSEQEEHAKQLRKAKEEQTSLVNQLNTANVTIGRLGQEIRNEKGKIEELNVCISNLQKDL 240

Query: 199 LKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLN 258
            K  EDK  LE + ++ L+ IE LQ+++NLL LEL++K+D +QK++SSL +KE ELKNL 
Sbjct: 241 SKTEEDKHILEAKLQESLESIELLQERVNLLGLELKDKEDYIQKINSSLAEKEVELKNLL 300

Query: 259 SVYKQ---------------------------------NELNARASSLLVERDDSKQKLE 285
           S Y Q                                 +ELNA  +SL++ RDD K+KL+
Sbjct: 301 SSYNQAKDELVAAHSEIRGLKDELQSNKEELEMRISMVDELNADVASLVLTRDDYKRKLD 360

Query: 286 AVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKD 345
             + EY  LK+SSE + + +AK L E+ +E+ +L+E L + + E   N+  I   TQE+D
Sbjct: 361 DAEDEYDRLKISSEKKASLDAKLLGERDQEIQELQENLRIAIKEVNGNQTRINDLTQERD 420

Query: 346 DLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRA 405
            L+K L+ E  N + LK EL++T+E L  +RN+ASDL  QL++SK  C +L++E+SR++A
Sbjct: 421 VLKKKLELESSNAQTLKDELEVTRENLSKSRNQASDLTNQLEESKSKCTELQSEVSRLQA 480

Query: 406 EFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRK 465
           E+ EV+++L +  +EAK++GE+LA EL   KE   K +EELQ  SHEL    E+R+ L+K
Sbjct: 481 EYDEVRNSLQSKFEEAKQNGEILASELSETKEQFMKTNEELQKASHELAIVIESRNGLQK 540

Query: 466 ELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDE 525
           EL +++++AE  +NDL+E++++V SLNKE+Q LEKQ  KDKEARKSLETDLEEA KSLDE
Sbjct: 541 ELDDVFQRAETISNDLEEERKVVFSLNKEIQTLEKQNLKDKEARKSLETDLEEAIKSLDE 600

Query: 526 MNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQE 585
           MNRNAL LSK LEK+NS ++NLEDEK VL +S+T+QK+   E++EN+EDAHNLVM+LG+E
Sbjct: 601 MNRNALLLSKELEKSNSHVANLEDEKEVLRQSITDQKNATIEAQENLEDAHNLVMKLGKE 660

Query: 586 RKSLDKRSKKLEEELASAKGEILRLRSQINSSKTLV-NDENPRKVEDDNKVPVT-AKKTT 643
           R S +K++KKLE +LASAKGEILRLRS++ SSK +V N++     E + KV VT AKKT 
Sbjct: 661 RDSFEKKAKKLEADLASAKGEILRLRSEMKSSKAIVNNNQQQANAEAEGKVKVTVAKKTA 720

Query: 644 RRRKSNSQ 651
           RRRK  +Q
Sbjct: 721 RRRKPTTQ 728

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574564|ref|XP_002528193.1| ATP binding protein, putative [Ricinus communis] gi|223532405|gb|EEF34200.1| ATP binding protein, putative [Ricinus communis]

 Score =  540 bits (1390), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 342/629 (54%), Positives = 447/629 (71%), Gaps = 57/629 (9%)

Query: 76  PLLNLRARALDGLAP-RSGVLGALYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDF 134
           P L+L    L+GL    +GVLGA YALT  EKKA + T+EYM  +LKE EA IVSLEK+F
Sbjct: 29  PFLSL----LNGLGIFGTGVLGAFYALTLKEKKAAETTMEYMTDKLKENEATIVSLEKNF 84

Query: 135 ESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSL 194
           E+KL ++QE+ +KQL+ AKEEQQ+L+N+LNSAN+TI+GLG+EL+NEKR IEEL   I  L
Sbjct: 85  EAKLLSKQEEFSKQLREAKEEQQVLVNQLNSANSTITGLGQELKNEKRIIEELNARIGGL 144

Query: 195 QTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETEL 254
             +L K  EDK+ LE E ++KL+ IE LQ+KINLLS+EL++K++ VQ LSS L +KE E+
Sbjct: 145 GANLSKAEEDKKALEGEMEEKLNSIEVLQNKINLLSIELKDKEENVQSLSSLLAEKELEV 204

Query: 255 KNLNSVYKQ---------------------------------NELNARASSLLVERDDSK 281
           KNLNS YK+                                 +ELN+  SSL+ E+D+S 
Sbjct: 205 KNLNSTYKETKDELAKAERDTKALKDELLKVIKELESKNLVVDELNSTVSSLMFEKDESN 264

Query: 282 QKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFT 341
           +KL AVQKEY +LK SSE + A +A  LRE+++EL +LKEKLEL  +E   ++A IA   
Sbjct: 265 KKLNAVQKEYNDLKSSSEKKAALDAVLLREREDELGRLKEKLELAQNEVRGSQAIIADLI 324

Query: 342 QEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEIS 401
           Q ++DLRK LD EL NVKNLK+ELQ +QE L   RNEAS L K+L+QS+  C  LE E+S
Sbjct: 325 QAREDLRKKLDTELNNVKNLKHELQNSQEALGKFRNEASHLAKELEQSRSKCTVLEAEVS 384

Query: 402 RIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRD 461
           RI AEFA+   T+   L+ AK+SGE L+GE+ A KE L+K+ E+LQ  S +L A    R+
Sbjct: 385 RIEAEFAKATETMQKGLENAKQSGEELSGEIMALKEQLRKSKEDLQIASLDLGALTIERN 444

Query: 462 SLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATK 521
           S ++ELV++YKK E TAN+L E+K++ SSL+KEL+ L+ Q  KDKEARKSLE DLEEATK
Sbjct: 445 SAQEELVDVYKKVEVTANELIEEKKVASSLSKELENLQNQVMKDKEARKSLERDLEEATK 504

Query: 522 SLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMR 581
           SLDEMNRNAL LS  LE AN++I++LED+K  LYKSLTEQK+ + E++ENMEDAHN+V++
Sbjct: 505 SLDEMNRNALILSGELEIANTRIASLEDDKEALYKSLTEQKNASKEAQENMEDAHNMVLK 564

Query: 582 LGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSKT-------------------LVN 622
           LG+ER+SL+K++KKLEEELASAKGEILRLRS+INSSKT                   L N
Sbjct: 565 LGKERESLEKKAKKLEEELASAKGEILRLRSKINSSKTVPNEQEHSQKGEAINSSTALPN 624

Query: 623 DENPRKVEDDNKVPVTAKKTTRRRKSNSQ 651
           ++  +K E + KV VTAK+  RRR++ SQ
Sbjct: 625 EQASQKGEAEEKVTVTAKRGGRRRRTGSQ 653

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357471881|ref|XP_003606225.1| MAR-binding filament-like protein 1-1 [Medicago truncatula] gi|355507280|gb|AES88422.1| MAR-binding filament-like protein 1-1 [Medicago truncatula]

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 325/695 (46%), Positives = 443/695 (63%), Gaps = 81/695 (11%)

Query: 4   VMGSSSFKQPLLHFPSSSSSFYSQSSLLLCTNNART---KRRNRLSAMASMRPGDPKDNI 60
            +G++S    LLH P      +  SS        RT   + R  +    S    DP    
Sbjct: 3   FVGAASSTSSLLHSPLLYPFLFPSSSSSSSCRLHRTTTKQLRPPVVVCCSRHQQDP---- 58

Query: 61  FTRRKTILLVGISVLPLL--NLRARALDGL--------------------APR------- 91
              ++T LL+G++VLP L  N    A++G+                    AP        
Sbjct: 59  ICNKRTFLLMGVAVLPFLKFNTADAAVEGILSSPKESEVKIPEDKKLGEAAPEMEKPSTS 118

Query: 92  ------------SGVLGALYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQ 139
                       SG+LGALYAL Q EK A  AT+E M  +LKEKE   VSL K++E KL 
Sbjct: 119 FVSLLNGIGIISSGLLGALYALAQKEKLAAVATIETMSNKLKEKEEQFVSLWKNYELKLS 178

Query: 140 NEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLL 199
           NEQE+R K L  AKEEQ+ L+ +LNSA +T++ LGKEL++EK  I EL+++ID L+  L 
Sbjct: 179 NEQEERAKLLGKAKEEQKALIEQLNSAKSTVTSLGKELKSEKSLIAELKLQIDRLEIDLT 238

Query: 200 KFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNS 259
           K   DK+ LE + K+K+D IE LQ +INLLS +L++K+  VQ L+SSL +KE EL+NLNS
Sbjct: 239 KADTDKKDLENKLKEKVDSIEILQKRINLLSEDLKDKEHVVQSLNSSLAEKELELRNLNS 298

Query: 260 VYKQN---------------------------------ELNARASSLLVERDDSKQKLEA 286
            Y Q                                  ELN+R SSL +E ++ + + + 
Sbjct: 299 TYDQTKDELSNAHLHVQGLKDEILKSQEELEGKDSLVMELNSRVSSLNLENNNLRSEYDV 358

Query: 287 VQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDD 346
           ++KE+ + KL+SE + A +AK L+EK++ELHQL +K EL L+E+ EN+  IA  T+E++ 
Sbjct: 359 LEKEFNDQKLTSEKKAALDAKVLKEKEDELHQLTDKFELALNESSENQVVIADLTKEREG 418

Query: 347 LRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAE 406
           L+++L+NE   V NLKYELQ+TQE LE +RN++++LEKQL +S + C DLE ++S++ +E
Sbjct: 419 LKELLENESKKVSNLKYELQVTQENLENSRNDSAELEKQLNKSNNLCKDLELQVSKLSSE 478

Query: 407 FAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKE 466
            AEVK  L   LD+ K   E L  EL   KE LKKA EELQ+ SHEL  T E RD L+KE
Sbjct: 479 LAEVKELLQRRLDDTKLEAEKLTTELITVKEHLKKAEEELQSTSHELTTTLETRDGLQKE 538

Query: 467 LVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEM 526
           L+ IYKKAE T+  LKE+K++ +SLN +LQAL++Q  KDKE+R+++E DLEEATKSLDEM
Sbjct: 539 LIEIYKKAEVTSEVLKEEKKLAASLNNDLQALKEQVLKDKESRRTIEMDLEEATKSLDEM 598

Query: 527 NRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQER 586
           NRN++ LS  LE+A S IS+LE+EK VL K LTEQ++ + E++EN+EDAHNL+ RLG+ER
Sbjct: 599 NRNSVILSSELEEAKSLISSLENEKEVLAKYLTEQRNASKEAQENIEDAHNLITRLGKER 658

Query: 587 KSLDKRSKKLEEELASAKGEILRLRSQINSSKTLV 621
           +SL+ R KKLEEELASAKGEILRLRSQI+SSK+ V
Sbjct: 659 ESLESRGKKLEEELASAKGEILRLRSQISSSKSKV 693

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541422|ref|XP_003539176.1| PREDICTED: MAR-binding filament-like protein 1-1-like [Glycine max]

 Score =  520 bits (1338), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 331/688 (48%), Positives = 446/688 (64%), Gaps = 97/688 (14%)

Query: 61  FTRRKTILLVGISVLPLLNL-RARALDGL-----------------------APR----- 91
              R+T+LL  I++LP   L RA AL+                         AP      
Sbjct: 44  LCNRRTVLLTSIALLPFRRLKRAPALESPPPPPPPTEETDVKTQEDNQEAEKAPEVDQPS 103

Query: 92  --------------SGVLGALYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESK 137
                         SGVLGALY L Q EK    AT+E M ++LKEKE  IVSL+K++E K
Sbjct: 104 NSFLLLLNGIGIFSSGVLGALYTLAQKEKSTAVATIETMSSKLKEKEELIVSLKKNYELK 163

Query: 138 LQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTS 197
           L N++E++ K L+ AKEEQ  L+N+LNSAN+TI+ LG+EL+NE+  IE+L+++ID L+  
Sbjct: 164 LLNKREEQAKLLEKAKEEQLALINQLNSANSTINRLGQELKNERSLIEDLKLQIDRLKAE 223

Query: 198 LLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNL 257
           L K   DK+ LE   K+K+D I  LQ++INLLS++L++K+D VQ L+SS  +KE ELK+L
Sbjct: 224 LSKTDTDKKDLENNLKEKIDSIGVLQERINLLSVDLKDKEDAVQNLNSSQAEKELELKSL 283

Query: 258 NSVYKQN---------------------------------ELNARASSLLVERDDSKQKL 284
            S Y+Q                                  ELN+R SSL +E ++ + K 
Sbjct: 284 KSTYEQTKDDLINVQLQIQGLKDELLKTQEELEAKDSLVIELNSRVSSLTIENNNFRSKC 343

Query: 285 EAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEK 344
           + ++KEY +LK S+  + A ++K LREK+EELHQLK++ EL L EA +++  IA  +QE+
Sbjct: 344 DVMEKEYNDLKFSAVKKAALDSKVLREKEEELHQLKDQFELALGEASKSQIVIADLSQER 403

Query: 345 DDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIR 404
           DDL++ LDNE   V +LK ELQ+T E L  +RNE+++LE  L  S   C +LE E+S++ 
Sbjct: 404 DDLKEALDNESSKVNHLKQELQVTLENLAKSRNESAELENLLTLSNKLCKELELEVSKLS 463

Query: 405 AEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLR 464
           +E  EV  +L  +LD+AK   E+LA EL  AKE LK+A  ELQ VS EL A  E  DSL+
Sbjct: 464 SELTEVNESLQRNLDDAKHEAEMLASELTTAKEHLKEAQAELQGVSKELTAALEKNDSLQ 523

Query: 465 KELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLD 524
           KELV +YKKAE+TA DLKEQK++V+SLNK+LQALE+Q SKDKE+RKSLE DLEEAT SLD
Sbjct: 524 KELVEVYKKAESTAEDLKEQKQLVASLNKDLQALEQQVSKDKESRKSLERDLEEATISLD 583

Query: 525 EMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQ 584
           EMNRNA+ LS  L++ANS +S+LE EK VL KSLT Q++   E+++N+EDAHNL+M+LG+
Sbjct: 584 EMNRNAVILSGELQRANSLVSSLEKEKDVLIKSLTNQRNACKEAQDNIEDAHNLIMKLGK 643

Query: 585 ERKSLDKRSKKLEEELASAKGEILRLRSQINSSKTLVNDE-----------NPRKV---- 629
           ER++L+K+ KK EEELASAKGEILRL+S+INSSK  VN+            NP KV    
Sbjct: 644 ERENLEKKGKKFEEELASAKGEILRLKSRINSSKVAVNNGPVQKDGGEKKVNPSKVAVNN 703

Query: 630 ------EDDNKVPVTAKKTTRRRKSNSQ 651
                 E +NKV V+A+KT RRRK+N Q
Sbjct: 704 EQAQKDEGENKVTVSARKTVRRRKANPQ 731

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544710|ref|XP_003540790.1| PREDICTED: MAR-binding filament-like protein 1-1-like [Glycine max]

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 341/746 (45%), Positives = 469/746 (62%), Gaps = 106/746 (14%)

Query: 4   VMGSSSF---KQPLLHFPSSSSSFYSQSSLLLCTNNARTKRRNRLSAMASMRPGDPKDNI 60
           +  SS+F     PL  FPSSSSS  S SS       +   R+ R S  +S      KD +
Sbjct: 1   MAASSTFCLLHSPLYQFPSSSSSSSSSSS-------SSGLRKLRASTTSSCLGQQDKDPV 53

Query: 61  FTRRKTILLVGISVLPLLNL-RARAL---------------------------------- 85
             +R TILL  I++LP   L RA AL                                  
Sbjct: 54  CNKR-TILLSSIALLPFRRLKRAPALESPPPPPTPTEETEVKTQEDNQEAEKASEVDQPS 112

Query: 86  -------DGLAP-RSGVLGALYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESK 137
                  +G+    SGVLGALY L Q EK    AT+E M ++LK+KE  IVSL+K++E K
Sbjct: 113 NSFLTLLNGIGIFSSGVLGALYTLAQKEKSTAVATIETMSSKLKDKEELIVSLKKNYELK 172

Query: 138 LQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTS 197
           L N+QE++ K ++ AKEEQ  L+N+LNSAN+TI  LG+EL++E+  IE+L+++I  L+T 
Sbjct: 173 LLNKQEEQAKLVEKAKEEQLALINQLNSANSTIKRLGQELKSERSLIEDLKLQIGQLKTE 232

Query: 198 LLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNL 257
           L K   DK+ LE   K+K+D I  LQ++INLLS++L+ K+D VQ L+S L +KE +LK+L
Sbjct: 233 LSKTDTDKKDLENNLKEKIDSIGVLQERINLLSVDLKGKEDVVQNLNSFLAEKELQLKSL 292

Query: 258 NSVYKQN---------------------------------ELNARASSLLVERDDSKQKL 284
           NS Y+Q                                  ELN+R SSL +E +D + K 
Sbjct: 293 NSTYEQTKDDLSNVQLQIQGLKDELLKSQEELEAKDSLVIELNSRVSSLTLENNDFRSKC 352

Query: 285 EAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEK 344
           + ++KEY  LKLS+E + A ++K LREK EELHQLK++ EL L EA +N+  I   +QE+
Sbjct: 353 DVIEKEYNVLKLSAEKKAALDSKVLREKDEELHQLKDQFELALGEASKNQTVIVDLSQER 412

Query: 345 DDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIR 404
           DDL++ L+NE   V +LK+ELQ+TQE L  +RNE ++LE  L +S     +LE ++S++ 
Sbjct: 413 DDLKEALENESSKVNHLKHELQVTQENLAKSRNEFAELENFLTESIKLRKELELKVSKLL 472

Query: 405 AEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLR 464
           +E  EVK +L  SL++ K   ++LA EL  AKE LK++  ELQ VS EL    E  DSL+
Sbjct: 473 SELTEVKESLQRSLEDGKHEAQMLASELTTAKEHLKESQAELQGVSKELTTALEKNDSLQ 532

Query: 465 KELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLD 524
           KEL+++YKKAE TA DLKEQK++V+SLNK+LQALE+Q SKDKE+RK LE DLEEATKSL+
Sbjct: 533 KELIDVYKKAETTAEDLKEQKQLVASLNKDLQALEQQVSKDKESRKPLERDLEEATKSLE 592

Query: 525 EMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQ 584
           EMNRNA+ LS  L++AN  +S+LE EK VL KSLT+Q++   E+++N+EDAHNL+M+LG+
Sbjct: 593 EMNRNAVILSGELQRANFLVSSLEKEKEVLTKSLTDQRNACKEAQDNIEDAHNLIMKLGK 652

Query: 585 ERKSLDKRSKKLEEELASAKGEILRLRSQINSSKTLVNDEN------------------- 625
           ER++L K+ KK EEELASAKGEILRL+S+INSS+  VN++                    
Sbjct: 653 ERENLGKKGKKFEEELASAKGEILRLKSRINSSEVAVNNDQVQKDGGENKVNSSEVAVNE 712

Query: 626 PRKVEDDNKVPVTAKKTTRRRKSNSQ 651
            +K E +NKV V+A+KT RRRK+N Q
Sbjct: 713 QQKDEGENKVTVSARKTVRRRKANPQ 738

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	651
TAIR|locus:2093462	726	MFP1 "MAR binding filament-lik	0.831	0.745	0.373	8.8e-96
UNIPROTKB|P93203	697	MFP1 "MAR-binding filament-lik	0.780	0.728	0.420	2.3e-94
DICTYBASE|DDB_G0286355	2116	mhcA "myosin heavy chain" [Dic	0.783	0.241	0.236	1.9e-21
WB|WBGene00012198	1256	W02B8.2 [Caenorhabditis elegan	0.778	0.403	0.221	9.1e-21
SGD|S000002216	1790	USO1 "Protein involved in the	0.837	0.304	0.238	1.1e-20
ZFIN|ZDB-GENE-030131-5870	1964	myh9a "myosin, heavy polypepti	0.784	0.260	0.214	2.1e-20
WB|WBGene00010306	1133	F59A2.6 [Caenorhabditis elegan	0.766	0.440	0.232	2.7e-20
UNIPROTKB|P35748	1972	MYH11 "Myosin-11" [Oryctolagus	0.784	0.259	0.229	3.5e-20
DICTYBASE|DDB_G0290503	1492	DDB_G0290503 [Dictyostelium di	0.775	0.338	0.212	5.2e-20
UNIPROTKB|P35749	1972	MYH11 "Myosin-11" [Homo sapien	0.784	0.259	0.227	5.8e-20

TAIR|locus:2093462 MFP1 "MAR binding filament-like protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 878 (314.1 bits), Expect = 8.8e-96, Sum P(2) = 8.8e-96
 Identities = 207/554 (37%), Positives = 322/554 (58%)

Query:   100 ALTQNEKKATDATLEYMKARLKEKEAAIVSL---EKDFESKLQNEQEQRTKQLKSAKEEQ 156
             A  Q+E++     +E  KA  KE++ ++++     KD  ++L  E     K  +  K++ 
Sbjct:   181 AKLQHEQEERKKEVE--KA--KEEQLSLINQLNSAKDLVTELGRELSSEKKLCEKLKDQI 236

Query:   157 QLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKL 216
             + L N L+ A      L  +L+ +   +E L+  I+ L   L    E  +       +K 
Sbjct:   237 ESLENSLSKAGEDKEALETKLREKLDLVEGLQDRINLLSLELKDSEEKAQRFNASLAKKE 296

Query:   217 DRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVE 276
               ++ L       S +L E    +++    L + ++EL + NS  +  ELN R ++L+ E
Sbjct:   297 AELKELNSIYTQTSRDLAEAKLEIKQQKEELIRTQSELDSKNSAIE--ELNTRITTLVAE 354

Query:   277 RDDSKQKLEAVQKEYKELKLSSENETASNAXXXXXXXXXXXXXXXXXXXTLDEACENRAT 336
             ++   QKL+++ K+Y  LKL+SE + A++A                    LD+  +++  
Sbjct:   355 KESYIQKLDSISKDYSALKLTSETQAAADAELISRKEQEIQQLNENLDRALDDVNKSKDK 414

Query:   337 IAKFTQEKDDLRKMLDNELGNVKNLKYXXXXXXXXXXXXRNEASDLEKQLKQSKDSCADL 396
             +A  T++ +D ++MLD EL  VKNL++            R+  SDLE  L +S+  C+ L
Sbjct:   415 VADLTEKYEDSKRMLDIELTTVKNLRHELEGTKKTLQASRDRVSDLETMLDESRALCSKL 474

Query:   397 ETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEAT 456
             E+E++ +  E+ E K     +LD  K+  E+ A EL   K++ ++  +EL+ V+HEL+ +
Sbjct:   475 ESELAIVHEEWKEAKERYERNLDAEKQKNEISASELALEKDLRRRVKDELEGVTHELKES 534

Query:   457 AENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDL 516
             +    SL+KELV IYKK E +  +L+E+K+ V SLNKE++ +EKQ   ++EARKSLETDL
Sbjct:   535 SVKNQSLQKELVEIYKKVETSNKELEEEKKTVLSLNKEVKGMEKQILMEREARKSLETDL 594

Query:   517 EEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAH 576
             EEA KSLDEMN+N   LS+ LEK N+  SNLEDEK VL +SL E K+ + E++EN+EDAH
Sbjct:   595 EEAVKSLDEMNKNTSILSRELEKVNTHASNLEDEKEVLQRSLGEAKNASKEAKENVEDAH 654

Query:   577 NLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSKTLVNDENPRKVEDDNKVP 636
              LVM LG+ER+ L+K+ KKLEE+L SAKGEILR+RSQ +S K + + +N  K   DN V 
Sbjct:   655 ILVMSLGKEREVLEKKVKKLEEDLGSAKGEILRMRSQPDSVKAVNSTDNKEK--SDNTV- 711

Query:   637 VTAKKTTRRRKSNS 650
              T KK  RRRKS++
Sbjct:   712 -TVKKVVRRRKSST 724

GO:0005634 "nucleus" evidence=ISM

GO:0003677 "DNA binding" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0042646 "plastid nucleoid" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0000272 "polysaccharide catabolic process" evidence=RCA

GO:0005982 "starch metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019760 "glucosinolate metabolic process" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

UNIPROTKB|P93203 MFP1 "MAR-binding filament-like protein 1" [Solanum lycopersicum (taxid:4081)]

 Score = 939 (335.6 bits), Expect = 2.3e-94, P = 2.3e-94
 Identities = 218/519 (42%), Positives = 320/519 (61%)

Query:   119 RLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQ 178
             +LK  +  ++SL ++    LQNE+    K  +  K E + L N L +       L +EL+
Sbjct:   188 QLKSAKTTVISLGQE----LQNEK----KLAEDLKFEIKGLQNDLMNTKEDKKKLQEELK 239

Query:   179 NEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDD 238
              +   I+ L  +I  L T +       R+   +  +K   +  L D       +L     
Sbjct:   240 EKLDLIQVLEEKITLLTTEIKDKEVSLRSNTSKLAEKESEVNSLSDMYQQSQDQLMNLTS 299

Query:   239 GVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKELKLSS 298
              +++L   +Q++E EL+ L  V + N LN + +SLL+ERD+SK++L A+QKEY E K +S
Sbjct:   300 EIKELKDEIQKRERELE-LKCVSEDN-LNVQLNSLLLERDESKKELHAIQKEYSEFKSNS 357

Query:   299 ENETASNAXXXXXXXXXXXXXXXXXXXTLDEACENRATIAKFTQEKDDLRKMLDNELGNV 358
             + + AS+A                    L EA +N   IA  T+EK++LR+M+D EL NV
Sbjct:   358 DEKVASDATLGEQEKRLHQLEEQLGTA-LSEASKNEVLIADLTREKENLRRMVDAELDNV 416

Query:   359 KNLKYXXXXXXXXXXXXRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSL 418
               LK             R+E SD+  QL+Q +D  + LE E+S+++ E  E + +L  ++
Sbjct:   417 NKLKQEIEVTQESLENSRSEVSDITVQLEQLRDLSSKLEREVSKLQMELEETRASLQRNI 476

Query:   419 DEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATA 478
             DE K S E+LA EL   KE+LKK +EE+  +S EL A +ENRDSL+ ELVN+YKK E T 
Sbjct:   477 DETKHSSELLAAELTTTKELLKKTNEEMHTMSDELVAVSENRDSLQTELVNVYKKREHTR 536

Query:   479 NDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLE 538
             N+LK++K IV +L +EL+ LE Q +++KE RKSLE +LE+AT+SLDE+NRN L L++ LE
Sbjct:   537 NELKQEKTIVRTLEEELKFLESQITREKELRKSLEDELEKATESLDEINRNVLALAEELE 596

Query:   539 KANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEE 598
              A S+ S+LEDE+ V  +S++EQK I+ E++EN+EDAH+LVM+LG+ER+SL+KR+KKLE+
Sbjct:   597 LATSRNSSLEDEREVHRQSVSEQKQISQEAQENLEDAHSLVMKLGKERESLEKRAKKLED 656

Query:   599 ELASAKGEILRLRSQINSSKTLVNDENPRKVEDDNKVPV 637
             E+A+AKGEILRLRSQINS K  V DE      +  KV V
Sbjct:   657 EMAAAKGEILRLRSQINSVKAPVEDEEKVVAGEKEKVNV 695

GO:0005515 "protein binding" evidence=IPI

DICTYBASE|DDB_G0286355 mhcA "myosin heavy chain" [Dictyostelium discoideum (taxid:44689)]

 Score = 289 (106.8 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 136/575 (23%), Positives = 263/575 (45%)

Query:   105 EKKATDATLEYMKARLKEKEAAIVSLE----------KDFESKLQNEQEQRT--KQLKSA 152
             +K+  +  +E M++ L EK+ A+ +L+          +D E +LQ EQ+ R   ++LK  
Sbjct:   892 QKRELEIRVEDMESELDEKKLALENLQNQKRSVEEKVRDLEEELQEEQKLRNTLEKLKKK 951

Query:   153 KEEQQLLMNKLNSANT-TISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEE 211
              EE+   M ++N   + TIS L K         +EL+ E++ L  S  +  +DK  LE+ 
Sbjct:   952 YEEELEEMKRVNDGQSDTISRLEK-------IKDELQKEVEELTESFSEESKDKGVLEKT 1004

Query:   212 RKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARAS 271
             R +       LQ +++ L++ L   D   +  S  L+QK+   + L  V  Q  L A  +
Sbjct:  1005 RVR-------LQSELDDLTVRL---DSETKDKSELLRQKKKLEEELKQV--QEALAAETA 1052

Query:   272 SLLVERDDSKQKLEAVQKEYKEL--KLSSENETASNAXXXXXXXXXXXXXXXXXXXTLDE 329
             + L +   +K+    +Q EY EL  K +SE    SN                     LDE
Sbjct:  1053 AKLAQEAANKK----LQGEYTELNEKFNSEVTARSNVEKSKKTLESQLVAVNNE---LDE 1105

Query:   330 ACENRATIAKFTQEKD----DLRKMLDNELGNVKNLKYXXXXXXXXXXXXRNEASDLEKQ 385
               +NR  + K  +  D    +++  L++  G  K+L              RN+ S+L+  
Sbjct:  1106 EKKNRDALEKKKKALDAMLEEMKDQLESTGGEKKSLYDLKVKQESDMEALRNQISELQST 1165

Query:   386 LKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEV--------LAGELFAAKE 437
             + + +   + LE E++R++ E  E +    +++++ K+  E+        LA E  AAK+
Sbjct:  1166 IAKLEKIKSTLEGEVARLQGEL-EAEQLAKSNVEKQKKKVELDLEDKSAQLAEET-AAKQ 1223

Query:   438 VLKKASEELQNVSHELEA--TAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKEL 495
              L K  ++L+    E++   +  N  ++  +  N  K  E + N+LK + E   +  K  
Sbjct:  1224 ALDKLKKKLEQELSEVQTQLSEANNKNVNSDSTN--KHLETSFNNLKLELE---AEQKAK 1278

Query:   496 QALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLY 555
             QALEK+    +   K +   LEE  K  +   +  ++L K + +   QI      K  + 
Sbjct:  1279 QALEKKRLGLESELKHVNEQLEEEKKQKESNEKRKVDLEKEVSELKDQIEEEVASKKAVT 1338

Query:   556 KSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRL-RSQI 614
             ++  +++S  +E +    D  +   +  ++ K+L  ++++L      A+G++ R  RS+ 
Sbjct:  1339 EAKNKKESELDEIKRQYADVVSSRDKSVEQLKTLQAKNEELRNTAEEAEGQLDRAERSKK 1398

Query:   615 NSSKTLVNDENPRKVEDDNKVPVTAKKTTRRRKSN 649
              +   L  +E  + +E++    V A+K  ++ +++
Sbjct:  1399 KAEFDL--EEAVKNLEEETAKKVKAEKAMKKAETD 1431

GO:0032009 "early phagosome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0071889 "14-3-3 protein binding" evidence=IPI

GO:0000910 "cytokinesis" evidence=IGI;IMP

GO:0033275 "actin-myosin filament sliding" evidence=IDA

GO:0030898 "actin-dependent ATPase activity" evidence=IDA

GO:0000146 "microfilament motor activity" evidence=IDA

GO:0051015 "actin filament binding" evidence=IEA;IDA

GO:0060328 "cytoplasmic actin-based contraction involved in forward cell motility" evidence=IMP

GO:0034461 "uropod retraction" evidence=IMP

GO:0031270 "pseudopodium retraction" evidence=IMP

GO:0030866 "cortical actin cytoskeleton organization" evidence=IDA

GO:0005938 "cell cortex" evidence=IEA;IDA

GO:0032060 "bleb assembly" evidence=IMP

GO:0006935 "chemotaxis" evidence=IMP

GO:0008104 "protein localization" evidence=IMP

GO:0030837 "negative regulation of actin filament polymerization" evidence=IMP

GO:0030038 "contractile actin filament bundle assembly" evidence=IMP

GO:0046847 "filopodium assembly" evidence=IMP

GO:0003774 "motor activity" evidence=IEA;IDA

GO:0001931 "uropod" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA;IDA

GO:0030554 "adenyl nucleotide binding" evidence=IDA

GO:0006928 "cellular component movement" evidence=IGI;IMP

GO:0005826 "actomyosin contractile ring" evidence=IDA

GO:0032154 "cleavage furrow" evidence=IDA

GO:0031143 "pseudopodium" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IDA

GO:0031154 "culmination involved in sorocarp development" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0045179 "apical cortex" evidence=IDA

GO:0016459 "myosin complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0031254 "trailing edge" evidence=IDA

GO:0042641 "actomyosin" evidence=IDA

GO:0032982 "myosin filament" evidence=IDA

GO:0031034 "myosin filament assembly" evidence=IDA

GO:0016460 "myosin II complex" evidence=IDA

GO:0044351 "macropinocytosis" evidence=RCA

WB|WBGene00012198 W02B8.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 280 (103.6 bits), Expect = 9.1e-21, P = 9.1e-21
 Identities = 122/550 (22%), Positives = 239/550 (43%)

Query:   103 QNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNK 162
             + EK+    T+   +  LKE E  I +L      KL++E   +T ++ S  EE +    K
Sbjct:   119 ETEKQKMQDTISGYQEDLKENEIRIENLNSRLH-KLEDELSAKTHEIFSIGEELKNKTMK 177

Query:   163 LNSAN----TTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEE---ERKQK 215
             LN  N    T ++ +  E +N +R +++ R E+       L+  +D+   ++   E KQ 
Sbjct:   178 LNEKNSQFQTKLAEISSENRNLERKVQKFREELIVKDQRSLEVHQDQENTQKVLKEVKQL 237

Query:   216 LDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLV 275
              DR++ L  K   +S  ++E+DD +Q  +  +++  +ELK L +   + EL+ +   + V
Sbjct:   238 SDRLDYLTPKRKDVS-RIKERDDFLQFSAKIIEETMSELK-LKNARLERELSEKEELVKV 295

Query:   276 ERDDSKQKLEAVQKEYKELKLSSENETASNAXXXXXXXXXXXXXXXXXXXTLDEACENRA 335
                 +K++L+ +QK   +    SE  T                          +  E R 
Sbjct:   296 ----TKEELQELQKTVTQAMGDSEQATK-------YLHAENMKLTRQKADIRCDLLEARR 344

Query:   336 TIAKFTQEKDDLRKMLDNELGNVKNLKYXXXXXXXXXXXXRNEASDLEKQLKQSKDSCAD 395
              +  F +++++L K  D  L +V+ +              +  A + E+Q+ + K   A 
Sbjct:   345 NLKGFDEKREELEKQRDEALEDVRRITELKKNVEIELRSLKLLAEEREEQIDELKSRVAG 404

Query:   396 LETEISRIRAEFAEVKHTLGNSLDEAKRSGE--VLAGELFAAKEVLKKASEELQNVSHE- 452
              E     +R +   VK+ L  + ++  + G   V+A +  +  + LK+ +E  +  + E 
Sbjct:   405 YEV----LRRDHEAVKNELAKAEEKLNKMGAHLVMADKQSSHFKTLKETAEGSRRRAIEQ 460

Query:   453 ----------LEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLN----KELQAL 498
                       LEA+ EN+  + +EL  +  +    A  ++  KE +   +    +EL  L
Sbjct:   461 CNEMVARIRGLEASLENQRKVEQELEMVKAENVRQAKKIEFMKEEIQETHLDYREELSKL 520

Query:   499 EKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSL 558
              K      EA    +++L  A K++ E+  +  +L + LE+     S + +E   L K +
Sbjct:   521 AKGGGSH-EADSQRDSELRSAKKTIQEVKADNKKLQQILEEVRQNQSKVLEENVKLRKGM 579

Query:   559 TEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSK 618
              E      E + N   +     RL  E K  +++  K+EEEL   + E+L     +N  +
Sbjct:   580 AEAIEKIEEFKRNWHSSREAGERLQLEAKENEEKVLKVEEELQEKRLEVLEKEELVNYLQ 639

Query:   619 TLVNDENPRK 628
             + +N +  ++
Sbjct:   640 SQINTKQTKQ 649

GO:0005083 "small GTPase regulator activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

SGD|S000002216 USO1 "Protein involved in the ER to Golgi transport step of secretion" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 281 (104.0 bits), Expect = 1.1e-20, P = 1.1e-20
 Identities = 141/590 (23%), Positives = 267/590 (45%)

Query:    77 LLNLRARALDGLAPRSGVLGALYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFES 136
             L +LRA  L+ L      L A   L + E++  +   +Y +  + +    I S +++ ES
Sbjct:  1140 LNSLRAN-LESLEKEHEDLAA--QLKKYEEQIANKERQYNE-EISQLNDEITSTQQENES 1195

Query:   137 --KLQNEQEQRTKQLKSAKEEQQ-LLMNKLNSANTTISGLGKELQ-NEKRFIEELRIEID 192
               K  +E E   K +KS  EEQ  L  +++++ N  I  L K+ + NE   +E ++  ++
Sbjct:  1196 IKKKNDELEGEVKAMKSTSEEQSNLKKSEIDALNLQIKELKKKNETNEASLLESIK-SVE 1254

Query:   193 SLQTSLLKFGEDKRTLEEERKQKL-DRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKE 251
             S +T  +K  +D+   +E+   +L D+++  +DK N   LEL+++ +   K+   L  K 
Sbjct:  1255 S-ETVKIKELQDECNFKEKEVSELEDKLKASEDK-NSKYLELQKESE---KIKEELDAKT 1309

Query:   252 TELK-------NLNSVYK--QNELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENET 302
             TELK       NL+   +  ++EL+    +   ER +++++LE ++ E +    + E E 
Sbjct:  1310 TELKIQLEKITNLSKAKEKSESELSRLKKTSSEERKNAEEQLEKLKNEIQIKNQAFEKER 1369

Query:   303 AS-NAXXXXXXXXXXXXXXXXXXXTLDEACENRATIAKFTQEKDDLRKM-LDN-ELGNVK 359
                N                     +    EN     +    + +L K+ L N EL   K
Sbjct:  1370 KLLNEGSSTITQEYSEKINTLEDELIRLQNENELKAKEIDNTRSELEKVSLSNDELLEEK 1429

Query:   360 NLKYXXXXXXXXXXXXRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLD 419
                             +   +D EK L   +D+  DLE+   ++RA   E K  +   L 
Sbjct:  1430 QNTIKSLQDEILSYKDKITRND-EKLLSIERDNKRDLESLKEQLRAA-QESKAKVEEGLK 1487

Query:   420 EAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATAN 479
             + +        EL  +KE++KK    +++   EL+++ E      ++L    K AE    
Sbjct:  1488 KLEEESSKEKAELEKSKEMMKKLESTIESNETELKSSMETIRKSDEKLEQSKKSAEEDIK 1547

Query:   480 DLKEQK-EIVSSLNKELQALEKQTSKDKEARKS---LETDLEEATKSLDEMNRNALELSK 535
             +L+ +K +++S +N+  + +E+  SK +   KS   LET  +E   + +++  NA E + 
Sbjct:  1548 NLQHEKSDLISRINESEKDIEELKSKLRIEAKSGSELETVKQELNNAQEKIRINAEENTV 1607

Query:   536 NLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRS-- 593
                K       L+D++A + KS  E+K +     + +E   +   +  Q+ +  ++R+  
Sbjct:  1608 LKSKLEDIERELKDKQAEI-KSNQEEKELLTSRLKELEQELDSTQQKAQKSEE-ERRAEV 1665

Query:   594 KKLEEELASAKGEILRLRSQINSSKTLVNDENPRKVEDDNKVPVTAKKTT 643
             +K + E +    + + L ++ N    LVN E   K ++D     T KKTT
Sbjct:  1666 RKFQVEKSQLDEKAMLLETKYND---LVNKEQAWKRDED-----TVKKTT 1707

GO:0015031 "protein transport" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA;IDA

GO:0048193 "Golgi vesicle transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISM

GO:0012507 "ER to Golgi transport vesicle membrane" evidence=IDA

GO:0048211 "Golgi vesicle docking" evidence=IDA

GO:0035493 "SNARE complex assembly" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IMP

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

ZFIN|ZDB-GENE-030131-5870 myh9a "myosin, heavy polypeptide 9a, non-muscle" [Danio rerio (taxid:7955)]

 Score = 279 (103.3 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 115/537 (21%), Positives = 228/537 (42%)

Query:   105 EKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLN 164
             + K + A+++  K  L E E   + +E    S+ +N+ E R K+ +S  +E Q+   +  
Sbjct:  1214 QSKRSKASVDKAKQAL-ESERNELQIELKSLSQSKNDSENRRKKAESQLQELQVKHTESE 1272

Query:   165 SANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQD 224
                  +     ++Q E   +E L+  +  +++  +K  +D   +E + K     +E    
Sbjct:  1273 RQKHELLDKVSKMQAE---LESLQGTVTKVESKSIKAAKDCSAVESQLKDAQALLEEETR 1329

Query:   225 KINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQ-NELNARASSLLVERDDSKQK 283
             +   +S  LR+ +D    L   L+++E   KN   V KQ +   A+ + +  + +   Q 
Sbjct:  1330 QKLAISTRLRQLEDEQNNLKEMLEEEEESKKN---VEKQLHTAQAQLAEMKKKIEQEAQS 1386

Query:   284 LEAVQKEYKELKLSSENETASNAXXXXXXXXXXXXXXXXXXXTLDEACENRATIAKFTQE 343
             LE+++   K+L+   E+                          LD+   ++  + +  QE
Sbjct:  1387 LESMEDGKKKLQREVES-VLQQLEERNASYDKLDKTKTRLQRELDDVLVDQGHLRQTVQE 1445

Query:   344 KDDLRKMLDNELGNVKNL--KYXXXXXXXXXXXXRNEASDLEKQLKQSKDSCADLETEIS 401
              +  +K  D  L   K++  KY              E   L   L +  ++  DL+ E+ 
Sbjct:  1446 LERKQKKFDQMLAEEKSISTKYAEERDRAEAEAREKETKSLT--LARELEAMTDLKNELE 1503

Query:   402 RIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRD 461
             R+  +       L +S D+A +S   L       ++ L++   +L+ +  EL+ T + + 
Sbjct:  1504 RVNKQLKTEMEDLVSSKDDAGKSVHELERAKRGMEQQLEEMKTQLEELEDELQLTEDAKL 1563

Query:   462 SLRKELVNIYKKAEATANDLKEQ-----KEIVSSLNK---ELQALEKQTSKDKEARKSLE 513
              L   +  +  + E       EQ     K++V  + +   EL+   KQ ++    RK LE
Sbjct:  1564 RLEVNMQALKAQFERDLQSRDEQGEEKRKQLVKQVREMEMELEDERKQRAQAVSVRKKLE 1623

Query:   514 TDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENME 573
              DL E    +D  N+   E  K L+K  +Q+     E   L  S  E  + A E+   ++
Sbjct:  1624 LDLSELAAQIDLANKARDEALKQLKKLQAQMKEQMREFEDLRLSRDESLNQAKENERKIK 1683

Query:   574 DAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSKTLVNDENPRKVE 630
                  +M+L ++  + D+  +++++E    + EI    SQ N+  +L +DE  R++E
Sbjct:  1684 SMEAEIMQLHEDLAAADRAKRQIQQERDELQDEI---NSQ-NAKNSLSSDER-RRLE 1735

GO:0016459 "myosin complex" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0051015 "actin filament binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

WB|WBGene00010306 F59A2.6 [Caenorhabditis elegans (taxid:6239)]

 Score = 275 (101.9 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 128/550 (23%), Positives = 236/550 (42%)

Query:   105 EKKATDAT--LEYMKARLKEKEAAIVSLEKDFES-KLQNEQEQRTKQLKSAKEEQQLL-- 159
             + K  D T   E ++  L+E +  + S ++ FE+ K Q  +EQ  K ++    EQ +L  
Sbjct:    75 QAKYDDVTQKAERIQGELEESKKVLESEKQAFENEKEQEREEQLAKAMEKLNSEQNILDE 134

Query:   160 -MNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDR 218
                KL  +   +      +Q     +EE   E  + +T L    +   + E   K+  D 
Sbjct:   135 VTKKLEQSEEEVLAARGAIQELTEKLEESEKETSTAKTELEAVSKKLDSSETSLKEFSDM 194

Query:   219 IEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERD 278
             IE +  KI L++ E ++KD+ V+ L   L++ E   KN++ V  Q +L   +++   E  
Sbjct:   195 IEAM--KIQLINCE-KQKDEAVELLKQKLEEVE---KNMSDVEVQKQLLLESTTS--EMK 246

Query:   279 DSKQKLEAVQKEYKELKLSSEN--ETASNAXXXXXXXXXXXXXXXXXXXTLDEACENRAT 336
                +  E V+K+ +E + S EN  + A N                       EA +    
Sbjct:   247 QHAEAAEIVKKQLEEAQSSIENLKKDAENERNLKTALESDESSAISEITKQMEAAKKELE 306

Query:   337 IAKFTQEKDDLRKMLDNELGNVKNLKYXXXXXXXXXXXXRNEASDLEKQLKQSKDSCADL 396
              ++  +EK +LR+ +D  L  V N                 E + + K  +  K +   L
Sbjct:   307 ASE--KEKSELREQMDR-LQKVHNAGQEDIQKLQKTWEL--EMAKIAKSTEDEKLAREQL 361

Query:   397 ETEISRIRAEFA---EVKHT----LGNSLDEAKRSGEVLAGELFAAKEVLKKASE----- 444
               E+   + +     E KHT       +LD+A++  +VL  +L  A+  L+ + E     
Sbjct:   362 AGELENAKEDLKVVEEEKHTGIQRAQGALDDAEKEVKVLKEQLERAQSALESSQELASSQ 421

Query:   445 ---ELQNVSHELEATAENRDSLRKELVN-IYKKAEATANDLKEQKEIVSSLNKELQALEK 500
                ++Q +  EL+  A+ R S   E  N + +   AT  +   + EI   L ++L+ L+K
Sbjct:   422 KADKIQELEKELQ-NAQKRSSEELETANEMVRSLTATLENSNSETEI---LKQKLETLDK 477

Query:   501 QTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTE 560
             +    ++  K+L  ++   T SL E  +   ++ +NL+    Q+   ++EK  L K   +
Sbjct:   478 ELQARQQTEKALTEEINVLTTSLAEKEQQTAQI-QNLQTQIYQMEVEKEEKVELVKVQLQ 536

Query:   561 QKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSKTL 620
             Q   A +S  + E+A      L  E + L+ + K +E+  A A   +L  +  + +    
Sbjct:   537 Q---AAQSSSSAEEA------LRAEIEQLEAKLKAVEQAKAEALNSLLAEKEHLQAQLHQ 587

Query:   621 VNDENPRKVE 630
             +  E   K+E
Sbjct:   588 LGVEKEEKLE 597

GO:0000042 "protein targeting to Golgi" evidence=IEA

UNIPROTKB|P35748 MYH11 "Myosin-11" [Oryctolagus cuniculus (taxid:9986)]

 Score = 277 (102.6 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 129/562 (22%), Positives = 247/562 (43%)

Query:    88 LAPRSGVLGALYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTK 147
             LA    VLG      +++KK  +  L+ ++++  + E A   L  D   KLQNE E  T 
Sbjct:  1236 LAGELRVLGQAKQEVEHKKKKLEVQLQELQSKCSDGERARAELN-DKVHKLQNEVESVTG 1294

Query:   148 QLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFI-EELRIEIDSLQTSLLKFGEDKR 206
              L  A E + + + K       ++ LG +LQ+ +  + EE R +++ + T L +  +++ 
Sbjct:  1295 MLSEA-EGKAIKLAK------EVASLGSQLQDTQELLQEETRQKLN-VSTKLRQLEDERN 1346

Query:   207 TLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKET-------ELKNLNS 259
             +L+E+  ++++  + L+  I+ L+++L +    +Q  +S+++  E        E+++L  
Sbjct:  1347 SLQEQLDEEMEAKQNLERHISTLNIQLSDSKKKLQDFASTVESLEEGKKRFQKEIESLTQ 1406

Query:   260 VYKQ------------NELNARASSLLVERDDSKQKLEAVQKEYKELK--LSSENETASN 305
              Y++            N L      L+V+ D+ +Q +  ++K+ K+    L+ E   +S 
Sbjct:  1407 QYEEKAAAYDKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQKKFDQLLAEEKNISSK 1466

Query:   306 AXXXXXXXXXXXXXXXXXXXTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYXX 365
                                 +L  A E  A  AK  +E +   KML  E+ ++ + K   
Sbjct:  1467 YADERDRAEAEAREKETKALSLARALEE-ALEAK--EELERTNKMLKAEMEDLVSSKDDV 1523

Query:   366 XXXXXXXXXXRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSG 425
                       +     LE Q+++ K    +LE E+     E A+++  L  ++   K   
Sbjct:  1524 GKNVHELEKSKRA---LETQMEEMKTQLEELEDELQA--TEDAKLR--LEVNMQALKVQF 1576

Query:   426 EVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQK 485
             E    +L A  E  ++   +LQ   HE E   E+    R       KK E    DL+ Q 
Sbjct:  1577 E---RDLQARDEQNEEKRRQLQRQLHEYETELEDERKQRALAAAAKKKLEGDLKDLELQA 1633

Query:   486 EIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQIS 545
             +  S++    +A+ KQ  K +   K  + +LE+A  S DE+   A E  K  +   + + 
Sbjct:  1634 D--SAIKGREEAI-KQLLKLQAQMKDFQRELEDARASRDEIFATAKENEKKAKSLEADLM 1690

Query:   546 NLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKG 605
              L+++ A   ++  +      E  E +  + +    L  E++ L+ R  +LEEEL   +G
Sbjct:  1691 QLQEDLAAAERARKQADLEKEELAEELASSLSGRNALQDEKRRLEARIAQLEEELEEEQG 1750

Query:   606 --EIL--RLRSQINSSKTLVND 623
               E +  R+R     ++ L N+
Sbjct:  1751 NMEAMSDRVRKATQQAEQLSNE 1772

GO:0006939 "smooth muscle contraction" evidence=IDA

GO:0008307 "structural constituent of muscle" evidence=ISS

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IDA

GO:0048251 "elastic fiber assembly" evidence=ISS

GO:0048739 "cardiac muscle fiber development" evidence=ISS

DICTYBASE|DDB_G0290503 DDB_G0290503 [Dictyostelium discoideum (taxid:44689)]

 Score = 274 (101.5 bits), Expect = 5.2e-20, P = 5.2e-20
 Identities = 115/541 (21%), Positives = 227/541 (41%)

Query:   107 KATDATLEYMKARLKEKEAAIVSL-------EKDFESKLQNEQEQRTKQLKSAKEEQQLL 159
             K+   +L+ ++++L EK+  I  L         + +SKL  +Q +    +++ +     L
Sbjct:   825 KSNQDSLDELQSKLNEKQNEINELIENNQSSSNELQSKLNEKQNEINLLIENNQSSSDEL 884

Query:   160 MNKLNSANTTISGLGKELQNEKRFIEEL----RIEIDSLQTSLLKFGEDKRTLEEERKQK 215
              +KLN  +  I+ L  +L  ++  I EL        D LQ+ L++  +  +  E + K  
Sbjct:   885 QSKLNEKHQEINELQSKLNEKQNKINELVENNESSSDELQSKLIQLSDQLQEKENQLKSF 944

Query:   216 LDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLV 275
                I    +K+N L  +L EK + + +++ + Q    EL++ N   KQNE+N      L+
Sbjct:   945 ESSIIERDEKLNQLQSKLNEKQNEIDQITENNQSSLDELQS-NLNEKQNEINQ-----LI 998

Query:   276 ERDDSKQKLEAVQKEYKELKLSSENETASNAXXXXXXXXXXXXXXXXXXXTLDEACENRA 335
             E + S   L+ +Q +  E KL+  NE  +                      L++  E + 
Sbjct:   999 ENNQSS--LDELQSKLNE-KLNEINEKDNKINELIQTNESLSKDQQSKFENLEQELEEKN 1055

Query:   336 T-IAKFTQEKDDLRKMLDNELGNVKNLKYXXXXXXXXXXXXRNEASDLEKQLKQSKDSCA 394
               I     +  D+      +   +  L+              N+  D+  QL + K+   
Sbjct:  1056 NKILDLNSQIIDVNHQFSEKENELNQLQLKLIEKDQEIENQNNKIIDINNQLNE-KEKEI 1114

Query:   395 DLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELE 454
             ++  +      E  ++       ++E K   + L  EL   K+ + + ++++  +  E++
Sbjct:  1115 NINNDNDNNNEENIQL-------IEELKEKLQDLENELNLEKDTVNEKNDDINELKEEIK 1167

Query:   455 ATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKEL-QALEKQTSKDKEARKSLE 513
               +E      +EL  +    + + N++ +QK++V SLN+ L  A  K   KD E     +
Sbjct:  1168 LISEKLSEKEQELNEMINDYDESLNEINDQKDLVKSLNERLTNAHLKINEKDNEIHSLSK 1227

Query:   514 TDLEEATKSLDEMNRNALELSKNLEKANSQI-SNLEDEKAVLYKSLTEQKSIANESRENM 572
                 E    L+ +  N L    NL    SQI S+LE +    YK  +   S+  + +   
Sbjct:  1228 EGFNEIQSQLNLIT-NQLSEKDNLLIEKSQIISDLELQLRESYKERSSSSSLHQQQQMIS 1286

Query:   573 EDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSKTLVNDENPRKVEDD 632
              D  N    L  E++ +    K+  ++L     ++  L  Q N +K   N+   +++E++
Sbjct:  1287 PDLSNSNDELIVEKEEIINELKEKNQQLEQ---QLQDLCQQFNKNKQ-ENELKCQQLEEE 1342

Query:   633 N 633
             N
Sbjct:  1343 N 1343

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|P35749 MYH11 "Myosin-11" [Homo sapiens (taxid:9606)]

 Score = 275 (101.9 bits), Expect = 5.8e-20, P = 5.8e-20
 Identities = 128/562 (22%), Positives = 247/562 (43%)

Query:    88 LAPRSGVLGALYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTK 147
             LA    VLG      +++KK  +A ++ ++++  + E A   L  D   KLQNE E  T 
Sbjct:  1236 LAGELRVLGQAKQEVEHKKKKLEAQVQELQSKCSDGERARAELN-DKVHKLQNEVESVTG 1294

Query:   148 QLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFI-EELRIEIDSLQTSLLKFGEDKR 206
              L  A E + + + K       ++ L  +LQ+ +  + EE R +++ + T L +  E++ 
Sbjct:  1295 MLNEA-EGKAIKLAK------DVASLSSQLQDTQELLQEETRQKLN-VSTKLRQLEEERN 1346

Query:   207 TLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKET-------ELKNLNS 259
             +L+++  ++++  + L+  I+ L+++L +    +Q  +S+++  E        E++NL  
Sbjct:  1347 SLQDQLDEEMEAKQNLERHISTLNIQLSDSKKKLQDFASTVEALEEGKKRFQKEIENLTQ 1406

Query:   260 VYKQ------------NELNARASSLLVERDDSKQKLEAVQKEYKELK--LSSENETASN 305
              Y++            N L      L+V+ D+ +Q +  ++K+ ++    L+ E   +S 
Sbjct:  1407 QYEEKAAAYDKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQRKFDQLLAEEKNISSK 1466

Query:   306 AXXXXXXXXXXXXXXXXXXXTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYXX 365
                                 +L  A E  A  AK  +E +   KML  E+ ++ + K   
Sbjct:  1467 YADERDRAEAEAREKETKALSLARALEE-ALEAK--EELERTNKMLKAEMEDLVSSKDDV 1523

Query:   366 XXXXXXXXXXRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSG 425
                       +     LE Q+++ K    +LE E+     E A+++  L  ++   K   
Sbjct:  1524 GKNVHELEKSKRA---LETQMEEMKTQLEELEDELQA--TEDAKLR--LEVNMQALKGQF 1576

Query:   426 EVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQK 485
             E    +L A  E  ++   +LQ   HE E   E+    R       KK E    DL+ Q 
Sbjct:  1577 E---RDLQARDEQNEEKRRQLQRQLHEYETELEDERKQRALAAAAKKKLEGDLKDLELQA 1633

Query:   486 EIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQIS 545
             +  S++    +A+ KQ  K +   K  + +LE+A  S DE+   A E  K  +   + + 
Sbjct:  1634 D--SAIKGREEAI-KQLRKLQAQMKDFQRELEDARASRDEIFATAKENEKKAKSLEADLM 1690

Query:   546 NLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKG 605
              L+++ A   ++  +      E  E +  + +    L  E++ L+ R  +LEEEL   +G
Sbjct:  1691 QLQEDLAAAERARKQADLEKEELAEELASSLSGRNALQDEKRRLEARIAQLEEELEEEQG 1750

Query:   606 --EIL--RLRSQINSSKTLVND 623
               E +  R+R     ++ L N+
Sbjct:  1751 NMEAMSDRVRKATQQAEQLSNE 1772

GO:0003779 "actin binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0032982 "myosin filament" evidence=IEA

GO:0001725 "stress fiber" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005859 "muscle myosin complex" evidence=IEA

GO:0030485 "smooth muscle contractile fiber" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0048251 "elastic fiber assembly" evidence=IMP

GO:0048739 "cardiac muscle fiber development" evidence=IMP

GO:0006939 "smooth muscle contraction" evidence=ISS

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=ISS

GO:0008307 "structural constituent of muscle" evidence=IMP

GO:0005829 "cytosol" evidence=TAS

GO:0006936 "muscle contraction" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LW85	MFP1_ARATH	No assigned EC number	0.4299	0.9923	0.8898	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034426001 SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (719 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	651
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-15
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-13
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-12
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-12
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-12
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-12
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-12
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-12
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-12
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-12
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-12
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-12
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-11
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-11
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-11
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-11
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	3e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-10
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-10
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-09
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-09
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-08
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	9e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-07
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	3e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-07
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	5e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-07
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	3e-06
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	3e-06
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	4e-06
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	5e-06
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	6e-06
COG1269	660	COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su	9e-06
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	9e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	1e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-05
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	2e-05
pfam13166	713	pfam13166, AAA_13, AAA domain	2e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-05
pfam13166	713	pfam13166, AAA_13, AAA domain	3e-05
pfam07888	546	pfam07888, CALCOCO1, Calcium binding and coiled-co	3e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-05
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	6e-05
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	7e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-04
PRK05771	646	PRK05771, PRK05771, V-type ATP synthase subunit I;	1e-04
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	2e-04
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	2e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-04
pfam07888	546	pfam07888, CALCOCO1, Calcium binding and coiled-co	3e-04
pfam13514	1118	pfam13514, AAA_27, AAA domain	3e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
pfam05483	787	pfam05483, SCP-1, Synaptonemal complex protein 1 (	0.002
TIGR00618	1042	TIGR00618, sbcc, exonuclease SbcC	0.002
PHA02562	562	PHA02562, 46, endonuclease subunit; Provisional	0.002
TIGR03185	650	TIGR03185, DNA_S_dndD, DNA sulfur modification pro	0.002
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	0.003
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	0.003
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
COG1511	780	COG1511, COG1511, Predicted membrane protein [Func	0.004

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 78.2 bits (193), Expect = 8e-15
 Identities = 74/358 (20%), Positives = 170/358 (47%), Gaps = 11/358 (3%)

Query: 208 LEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELN 267
            +E +++   ++E  ++ +  L   L E +  ++KL    ++ E   +       + EL 
Sbjct: 170 YKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQE------LKAELR 223

Query: 268 -ARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELT 326
               + LL +  + +++LE +++E   L+   E       + L E ++E+ +LK +LE  
Sbjct: 224 ELELALLLAKLKELRKELEELEEELSRLEEELEEL----QEELEEAEKEIEELKSELEEL 279

Query: 327 LDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQL 386
            +E  E +  + +  +E ++L   +      ++ L+ EL+  +E LE  + +   L+++L
Sbjct: 280 REELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEEL 339

Query: 387 KQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEEL 446
           ++ +    +LE  ++ +     E++  L   L+E +   E L  EL   +  L +   EL
Sbjct: 340 EERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNEL 399

Query: 447 QNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDK 506
           + +  E+E+  E  + L + L ++ ++ +    +L+E +  +  LN+EL+ LE+Q  + +
Sbjct: 400 EELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELR 459

Query: 507 EARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSI 564
           +  K LE +L E  + L  + +    L   L++  ++    +  +AVL    +    +
Sbjct: 460 DRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGV 517

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 72.4 bits (178), Expect = 5e-13
 Identities = 72/340 (21%), Positives = 150/340 (44%), Gaps = 16/340 (4%)

Query: 282  QKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFT 341
            ++L  ++ + ++L         +  + L +  EEL +  E+LE  L+E     A + +  
Sbjct: 674  EELAELEAQLEKL-EEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEEL 732

Query: 342  QEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEIS 401
            ++     + L+ EL  ++    ELQ   E LE       +   +LK+  +       E+ 
Sbjct: 733  EQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIE-------ELE 785

Query: 402  RIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRD 461
              R    E    L   L+EA+R  + L  EL + ++  ++  +E++ +  E+E   E  D
Sbjct: 786  EKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLD 845

Query: 462  SLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATK 521
             L +EL  + K+ E    +L+E +     L  EL+ LE++  + +E  + LE++L E  +
Sbjct: 846  ELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKE 905

Query: 522  SLDEMNRNALELSKNLEKANSQISNLEDE-----KAVLYKSLTEQKSIANESRENMEDAH 576
             ++++     EL   LE+   ++  LE+E     +  L   L  +     E  E +   +
Sbjct: 906  EIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVN 965

Query: 577  NLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINS 616
               +   +E + +++R ++L+ +    +    +L   I  
Sbjct: 966  LRAI---EEYEEVEERYEELKSQREDLEEAKEKLLEVIEE 1002

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 71.3 bits (175), Expect = 1e-12
 Identities = 77/319 (24%), Positives = 153/319 (47%), Gaps = 19/319 (5%)

Query: 105 EKKATDATLEYMKARLKEKEAAIVSLEKDFES-KLQNEQEQRTKQLKSAKEEQQL----- 158
            K+  +  LE  +  L+  E  +  LEK  E  + Q E+ +R ++LK+   E +L     
Sbjct: 173 RKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLA 232

Query: 159 -----------LMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRT 207
                      L  +L+     +  L +EL+  ++ IEEL+ E++ L+  L +  E+   
Sbjct: 233 KLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLE 292

Query: 208 LEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELN 267
           L+EE ++    I  L++++  L  EL E ++ +++L   ++  + EL+   ++ +  EL 
Sbjct: 293 LKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLE--ELE 350

Query: 268 ARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTL 327
              + L   +++ ++KL A+ +E +EL  +   E A     L E + EL +LK ++E   
Sbjct: 351 QLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLE 410

Query: 328 DEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLK 387
           +        +    +E  +L   L+     ++ L  EL+  +E LE  R+   +LE++L 
Sbjct: 411 ERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELA 470

Query: 388 QSKDSCADLETEISRIRAE 406
           + ++    LE E+S + A 
Sbjct: 471 ELQEELQRLEKELSSLEAR 489

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 70.9 bits (174), Expect = 1e-12
 Identities = 80/376 (21%), Positives = 167/376 (44%), Gaps = 22/376 (5%)

Query: 136  SKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQ 195
            S+ +     + ++LK  +EE   L  +L      +  L  EL++ +  +EELR +++ L+
Sbjct: 656  SRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELE 715

Query: 196  TSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELK 255
              L +   +   LEEE +Q   R+E L++++  L  EL E  + +++L   L+  E  L 
Sbjct: 716  RQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALA 775

Query: 256  NLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEE 315
             L    +          L  +R   +++LE +++E +E     E    +  + L   ++ 
Sbjct: 776  KLKEEIE---------ELEEKRQALQEELEELEEELEEA----ERRLDALERELESLEQR 822

Query: 316  LHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETT 375
              +L++++E   +E  E    + +  +E ++L K L+     ++ L+ E +  ++ L+  
Sbjct: 823  RERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKEL 882

Query: 376  RNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAA 435
              E  +LE++L++ +   A+L+ EI ++R    E++  L     E     E L  E    
Sbjct: 883  EEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYED- 941

Query: 436  KEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKEL 495
                     EL+     LE   E    +    +  Y++ E    +LK Q+E    L +  
Sbjct: 942  -----TLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQRE---DLEEAK 993

Query: 496  QALEKQTSKDKEARKS 511
            + L +   +  + ++ 
Sbjct: 994  EKLLEVIEELDKEKRE 1009

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 70.1 bits (172), Expect = 2e-12
 Identities = 74/331 (22%), Positives = 147/331 (44%), Gaps = 25/331 (7%)

Query: 122 EKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEK 181
           E+   I  LE+  E +L+ +  +  K L   ++E + L  +L         L KEL+   
Sbjct: 674 ERRREIEELEEKIE-ELEEKIAELEKALAELRKELEELEEEL-------EQLRKELEELS 725

Query: 182 RFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQ 241
           R I  LR ++  L+  + +  E    L +E  +    IE L++++     EL E +  ++
Sbjct: 726 RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIE 785

Query: 242 KLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENE 301
           +L + ++Q + ELK L      +EL A  + L  E  + +++LE           S E  
Sbjct: 786 ELEAQIEQLKEELKALRE--ALDELRAELTLLNEEAANLRERLE-----------SLERR 832

Query: 302 TASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNL 361
            A+  +RL + +E++ +L E +E    E  E    I +   E + L     +    +  L
Sbjct: 833 IAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALL 892

Query: 362 KYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGN----S 417
           + EL+   E L    ++ S+L ++L++ ++  A LE  +  +      ++  L      +
Sbjct: 893 RSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLT 952

Query: 418 LDEAKRSGEVLAGELFAAKEVLKKASEELQN 448
           L+EA+     +  +   A+  LK+   +++ 
Sbjct: 953 LEEAEALENKIEDDEEEARRRLKRLENKIKE 983

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 69.7 bits (171), Expect = 3e-12
 Identities = 81/344 (23%), Positives = 151/344 (43%), Gaps = 28/344 (8%)

Query: 289 KEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLR 348
           KE KE        T  N +RL +  EEL +  EKLE         +A  A+  QE     
Sbjct: 171 KERKEEAERKLERTEENLERLEDLLEELEKQLEKLE--------RQAEKAERYQELKAEL 222

Query: 349 KMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFA 408
           + L+  L     L  +L+  ++ LE    E S LE++L++ ++   + E EI  +++E  
Sbjct: 223 RELELAL-----LLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELE 277

Query: 409 EVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELV 468
           E++  L           E L  EL   KE +++   E+  +   LE      + L + L 
Sbjct: 278 ELREEL-----------EELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLE 326

Query: 469 NIYKKAEATANDLKEQKEIVSSLNKEL----QALEKQTSKDKEARKSLETDLEEATKSLD 524
            + +K EA   +L+E++ ++  L + L    +A E+   K     + LE   E   + L 
Sbjct: 327 ELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELA 386

Query: 525 EMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQ 584
           E+     E+   LE+   +I +LE+    L + L + K    E    +E+    +  L +
Sbjct: 387 ELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNE 446

Query: 585 ERKSLDKRSKKLEEELASAKGEILRLRSQINSSKTLVNDENPRK 628
           E + L+++ ++L + L   + E+  L+ ++   +  ++    R 
Sbjct: 447 ELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARL 490

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 70.1 bits (172), Expect = 3e-12
 Identities = 88/381 (23%), Positives = 161/381 (42%), Gaps = 29/381 (7%)

Query: 175 KELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELR 234
           KEL+ E R      +E+  L   L +  E+   L+EE K+  + +E L  ++  L  +L 
Sbjct: 216 KELKAELR-----ELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLE 270

Query: 235 EKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKEL 294
           E    V +L   +++ + EL  L +  + + L  +   L     + +++LE ++ + +EL
Sbjct: 271 ELRLEVSELEEEIEELQKELYALAN--EISRLEQQKQILRERLANLERQLEELEAQLEEL 328

Query: 295 KLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNE 354
           + S  +E A     L EK EEL   KE+LE    E  E  A + +     ++L + L+  
Sbjct: 329 E-SKLDELAEELAELEEKLEEL---KEELESLEAELEELEAELEELESRLEELEEQLETL 384

Query: 355 LGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTL 414
              V  L+ ++      +E        LE + ++ +    +L  ++    AE  E++  L
Sbjct: 385 RSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE--EAELKELQAEL 442

Query: 415 GNS---LDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIY 471
                 L+E +   E L   L   +E L++A + L     EL       DSL +   N+ 
Sbjct: 443 EELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLE 502

Query: 472 KKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNAL 531
             +E     LK Q      L+  L  L +  S D+    ++E  L    +++        
Sbjct: 503 GFSEGVKALLKNQSG----LSGILGVLSELISVDEGYEAAIEAALGGRLQAV-------- 550

Query: 532 ELSKNLEKANSQISNLEDEKA 552
            + +NL  A   I+ L+  + 
Sbjct: 551 -VVENLNAAKKAIAFLKQNEL 570

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 69.7 bits (171), Expect = 3e-12
 Identities = 89/397 (22%), Positives = 161/397 (40%), Gaps = 63/397 (15%)

Query: 230  SLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQK 289
               LRE+ +G+++  SSLQ +   ++N            R   L  E  D+ +K+  ++K
Sbjct: 676  LQRLRERLEGLKRELSSLQSELRRIEN------------RLDELSQELSDASRKIGEIEK 723

Query: 290  EYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRK 349
            E ++L    E E     +RL E +E+L  L++++E    E  E  A I +          
Sbjct: 724  EIEQL----EQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEE---------- 769

Query: 350  MLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAE 409
                          E  + +        EA     ++ + +   + LE E+SRI A   E
Sbjct: 770  -------------LEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLRE 816

Query: 410  VKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVN 469
            ++  L     E               KE L+K  +ELQ    +L+   E   S+ KE+ N
Sbjct: 817  IEQKLNRLTLE---------------KEYLEKEIQELQEQRIDLK---EQIKSIEKEIEN 858

Query: 470  IYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRN 529
            +  K E    +L+E +  +  L   L  L+K+  + +   + LE  +EE    +++  + 
Sbjct: 859  LNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKR 918

Query: 530  ALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIAN------ESRENMEDAHNLVMRLG 583
              EL   LE    ++S +ED K    +   E+ S+ +         E +     + M   
Sbjct: 919  LSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAI 978

Query: 584  QERKSLDKRSKKLEEELASAKGEILRLRSQINSSKTL 620
            QE + + KR  +L+E+ A  + E   +  +I   +  
Sbjct: 979  QEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 68.9 bits (169), Expect = 5e-12
 Identities = 74/325 (22%), Positives = 136/325 (41%), Gaps = 24/325 (7%)

Query: 301 ETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKN 360
           E     + L EK EEL +   +LE  L E    R  + +  +E + LRK L+     +  
Sbjct: 674 ERRREIEELEEKIEELEEKIAELEKALAEL---RKELEELEEELEQLRKELEELSRQISA 730

Query: 361 LKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDE 420
           L+ +L   +  +E      + L K+L + +    +LE  +     E AE +      ++E
Sbjct: 731 LRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE----IEE 786

Query: 421 AKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATAND 480
            +   E L  EL A +E L +   EL  ++ E     E  +SL + +    ++ E     
Sbjct: 787 LEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQ 846

Query: 481 LKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKA 540
           ++E  E + SL  E++ LE+   +       LE++LE        +      L   LE+ 
Sbjct: 847 IEELSEDIESLAAEIEELEELIEE-------LESELEALLNERASLEEALALLRSELEEL 899

Query: 541 NSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKS---------LDK 591
           + ++  LE +++ L + L E +    +    +E     +  L QER S          + 
Sbjct: 900 SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNL-QERLSEEYSLTLEEAEA 958

Query: 592 RSKKLEEELASAKGEILRLRSQINS 616
              K+E++   A+  + RL ++I  
Sbjct: 959 LENKIEDDEEEARRRLKRLENKIKE 983

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 68.6 bits (168), Expect = 6e-12
 Identities = 63/258 (24%), Positives = 116/258 (44%), Gaps = 11/258 (4%)

Query: 359 KNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSL 418
           K L+ EL   +  LE    E   L+ +L+  +D   +L  ++  +  +  E    L   L
Sbjct: 670 KELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEE----LKREL 725

Query: 419 DEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATA 478
              +   E L   L   +E L++  EEL+ +   LE   E  +SL + L  + ++ E   
Sbjct: 726 AALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELE 785

Query: 479 NDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLE 538
              +  +E +  L +EL+  E++    +   +SLE   E   + ++E+          +E
Sbjct: 786 EKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEE-------EIE 838

Query: 539 KANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEE 598
           +   ++  LE+E   L K L E K    E     E+  + +  L +E++ L++  ++LE 
Sbjct: 839 ELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELES 898

Query: 599 ELASAKGEILRLRSQINS 616
           ELA  K EI +LR ++  
Sbjct: 899 ELAELKEEIEKLRERLEE 916

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 68.6 bits (168), Expect = 7e-12
 Identities = 79/291 (27%), Positives = 142/291 (48%), Gaps = 12/291 (4%)

Query: 310 REKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQ 369
           R K+  L Q +E  EL  +E  E  A + K  +E   L+  L +    ++ L+ +L+  +
Sbjct: 657 RNKRSSLAQKRELKELE-EELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELE 715

Query: 370 ETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLA 429
             LE  + E + LE++L+Q +    +LE E+  +  E           L+E +   E L 
Sbjct: 716 RQLEELKRELAALEEELEQLQSRLEELEEELEELEEE-----------LEELQERLEELE 764

Query: 430 GELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVS 489
            EL + +E L K  EE++ +  + +A  E  + L +EL    ++ +A   +L+  ++   
Sbjct: 765 EELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRE 824

Query: 490 SLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLED 549
            L +E++ LE++  + +E    LE +LEE  K L+E+     EL    E+   ++  LE+
Sbjct: 825 RLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEE 884

Query: 550 EKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEEL 600
           EK  L + L E +S   E +E +E     +  L  + + L+    +LEEEL
Sbjct: 885 EKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEEL 935

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 68.5 bits (168), Expect = 8e-12
 Identities = 75/336 (22%), Positives = 154/336 (45%), Gaps = 19/336 (5%)

Query: 268 ARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTL 327
           A+ +S ++ER    ++LE   +E +E     E   A   K L E +EEL QL+++LE   
Sbjct: 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS 725

Query: 328 DEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLK 387
            +    R  +A+   E + L + +      +  L+ E++  +E LE    E ++ E +++
Sbjct: 726 RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIE 785

Query: 388 QSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQ 447
           + +     L+ E+  +R    E++                   EL    E      E L+
Sbjct: 786 ELEAQIEQLKEELKALREALDELR------------------AELTLLNEEAANLRERLE 827

Query: 448 NVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKE 507
           ++   + AT    + L +++  + +  E+ A +++E +E++  L  EL+AL  + +  +E
Sbjct: 828 SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEE 887

Query: 508 ARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANE 567
           A   L ++LEE ++ L E+     EL + LE+   +++ LE     L   +   +   +E
Sbjct: 888 ALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSE 947

Query: 568 SRE-NMEDAHNLVMRLGQERKSLDKRSKKLEEELAS 602
                +E+A  L  ++  + +   +R K+LE ++  
Sbjct: 948 EYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 68.2 bits (167), Expect = 1e-11
 Identities = 78/372 (20%), Positives = 155/372 (41%), Gaps = 29/372 (7%)

Query: 180  EKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDG 239
            +KR ++EL  E+  L+  L K  E+ ++L+ E +   D +E L+ ++  L  +L E    
Sbjct: 665  QKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRE 724

Query: 240  VQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKELKLSSE 299
            +  L   L+Q ++ L+ L       E        L E  +  ++LE   +  +E     +
Sbjct: 725  LAALEEELEQLQSRLEELE------EELEELEEELEELQERLEELEEELESLEEALAKLK 778

Query: 300  NETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVK 359
             E     ++ +  +EEL +L+E+LE            +    Q ++ L + ++     ++
Sbjct: 779  EEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIE 838

Query: 360  NLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLD 419
             L+ +L   +E LE    E  +L+++L++ +    +LE E+  +  E  E++  L     
Sbjct: 839  ELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELES 898

Query: 420  EAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATAN 479
            E                  L +  EE++ +   LE      + L  EL  + ++ E    
Sbjct: 899  E------------------LAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYE 940

Query: 480  DLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEK 539
            D  E +     L +E++ LE++             + EE  +  +E+     +L +  EK
Sbjct: 941  DTLETE-----LEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEK 995

Query: 540  ANSQISNLEDEK 551
                I  L+ EK
Sbjct: 996  LLEVIEELDKEK 1007

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 67.8 bits (166), Expect = 1e-11
 Identities = 51/248 (20%), Positives = 112/248 (45%), Gaps = 9/248 (3%)

Query: 376 RNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAA 435
           R E  +L+++LK++++   +L  E+  +  +  E++  +     E +   E L  EL+A 
Sbjct: 238 REELEELQEELKEAEEELEELTAELQELEEKLEELRLEVS----ELEEEIEELQKELYAL 293

Query: 436 KEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKEL 495
              + +  ++ Q +   L       + L  +L  +  K +  A +L E +E +  L +EL
Sbjct: 294 ANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEEL 353

Query: 496 QALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLY 555
           ++LE +  + +   + LE+ LEE  + L+ +     +L   +   N++I  LE     L 
Sbjct: 354 ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLE 413

Query: 556 KSLTEQKSIANESRENMEDA-----HNLVMRLGQERKSLDKRSKKLEEELASAKGEILRL 610
                 +    E  + +E+A        +  L +E + L +  ++LEE L   + E+   
Sbjct: 414 DRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEA 473

Query: 611 RSQINSSK 618
              +++++
Sbjct: 474 EQALDAAE 481

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 67.4 bits (165), Expect = 2e-11
 Identities = 104/616 (16%), Positives = 228/616 (37%), Gaps = 89/616 (14%)

Query: 82  ARALDGLAPRSGVLGALYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNE 141
           A  L  L  +   L       + E +  +A LE +++RL+E E  + +L     ++L+ +
Sbjct: 336 AEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV-AQLELQ 394

Query: 142 QEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEK-----RFIEELRIEIDSLQT 196
                 +++  +   + L ++       I  L K+L+  +       +EEL  E++ LQ 
Sbjct: 395 IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQE 454

Query: 197 SLLKFGEDKRTLEEERKQK------------------------LDRIEGLQDKINLLSLE 232
            L +  E    L EE ++                          + +EG  + +  L   
Sbjct: 455 ELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKN 514

Query: 233 LREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYK 292
                  +  LS  +   E     + +      L  R  +++VE  ++ +K  A  K+ +
Sbjct: 515 QSGLSGILGVLSELISVDEGYEAAIEAA-----LGGRLQAVVVENLNAAKKAIAFLKQNE 569

Query: 293 ELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLD 352
             +++     +     ++    E+ +  E       +            +    LRK L 
Sbjct: 570 LGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKD----------LVKFDPKLRKALS 619

Query: 353 NELGNV-------------KNLKYELQI--------------------TQETLETTRNEA 379
             LG V             K L+   +I                    T  ++   R E 
Sbjct: 620 YLLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREI 679

Query: 380 SDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVL 439
            +LE+++++ ++  A+LE  ++ +R E  E++      L++ ++  E L+ ++ A ++ L
Sbjct: 680 EELEEKIEELEEKIAELEKALAELRKELEELE----EELEQLRKELEELSRQISALRKDL 735

Query: 440 KKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALE 499
            +   E++ +   +   ++    L  E+  + ++ E    +L E +  +  L  +++ L+
Sbjct: 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795

Query: 500 KQTSKDKEARKSLETDLEE-------ATKSLDEMNRNALELSKNLEKANSQISNLEDEKA 552
           ++    +EA   L  +L           + L+ + R      + LE    QI  L ++  
Sbjct: 796 EELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIE 855

Query: 553 VLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRS 612
            L   + E + +  E    +E   N    L +    L    ++L EEL   + +   LR 
Sbjct: 856 SLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRR 915

Query: 613 QINSSKTLVNDENPRK 628
           ++   +  +     R 
Sbjct: 916 ELEELREKLAQLELRL 931

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 66.2 bits (162), Expect = 3e-11
 Identities = 55/318 (17%), Positives = 138/318 (43%), Gaps = 14/318 (4%)

Query: 310 REKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKN--LKYELQI 367
            E+ EE+ +  E+L+L +DE  +    + +  ++ +  + +L  E    +   L  E + 
Sbjct: 176 LEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLK-EKREYEGYELLKEKEA 234

Query: 368 TQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEV-----KHTLGNSLDEAK 422
            +   E    + + LE++L++  +  ++LE  +  I     E+            L   +
Sbjct: 235 LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKE 294

Query: 423 RSGEV------LAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEA 476
           + GE+      L   +   +  L+ A E L  +  E++      + L +E+    K+ + 
Sbjct: 295 KIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDK 354

Query: 477 TANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKN 536
              +  E KE +  L  EL+ ++K+ ++ ++  K     LE+  + ++E+ R    L + 
Sbjct: 355 LTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEE 414

Query: 537 LEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKL 596
           L++ + ++++L    A +   + E +    +    ++     + +L  +    ++    L
Sbjct: 415 LQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDL 474

Query: 597 EEELASAKGEILRLRSQI 614
           +EE    + E+ +L+ ++
Sbjct: 475 KEEYDRVEKELSKLQREL 492

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 66.2 bits (162), Expect = 3e-11
 Identities = 122/515 (23%), Positives = 228/515 (44%), Gaps = 66/515 (12%)

Query: 143 EQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFG 202
           E+  K+ +   EE    +N+++S    +    ++L+ E + +EEL+ EI+ L+  L    
Sbjct: 192 EELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLE 251

Query: 203 EDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYK 262
             KR LEE+ ++  +RIE L+ +I     EL EK     K    L++K  E   L+  Y 
Sbjct: 252 GSKRKLEEKIRELEERIEELKKEIE----ELEEK----VKELKELKEKAEEYIKLSEFY- 302

Query: 263 QNELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEK 322
             E       +       ++++  +++  KEL+               EK+E L +LK+K
Sbjct: 303 -EEYLDELREIEKRLSRLEEEINGIEERIKELE---------------EKEERLEELKKK 346

Query: 323 LELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDL 382
           L+       E    + +  +  ++ +   +         + + ++T  T E    E  +L
Sbjct: 347 LKELEKRLEE----LEERHELYEEAKAKKEEL------ERLKKRLTGLTPEKLEKELEEL 396

Query: 383 EKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFA--AKEVLK 440
           EK  ++ ++  + +   I  ++ E  E+K  +   L +AK    V   EL     KE+L+
Sbjct: 397 EKAKEEIEEEISKITARIGELKKEIKELKKAI-EELKKAKGKCPVCGRELTEEHRKELLE 455

Query: 441 KASEELQNVSHELEATAENRDSLRKELVNIYK---------KAEATANDLKEQKEIVSSL 491
           + + EL+ +  EL+   E    LRKEL  + K         K +  A  LKE +E +   
Sbjct: 456 EYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKY 515

Query: 492 NKE-LQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDE 550
           N E L+   ++  K KE    L+ +++   K L+++     EL K L +   ++  LE+E
Sbjct: 516 NLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLE----ELKKKLAELEKKLDELEEE 571

Query: 551 KAVLYKSLTEQ--KSIA--NESRENMEDAHNLVMRLGQERKSLDKRSKKLE--------- 597
            A L K L E   +S+    E  + +E  +N  + L    K L++  K+L+         
Sbjct: 572 LAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKA 631

Query: 598 -EELASAKGEILRLRSQINSSKTLVNDENPRKVED 631
            EELA  +  +  LR ++   +   ++E   ++ +
Sbjct: 632 FEELAETEKRLEELRKELEELEKKYSEEEYEELRE 666

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 64.0 bits (156), Expect = 2e-10
 Identities = 88/344 (25%), Positives = 157/344 (45%), Gaps = 23/344 (6%)

Query: 175 KELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELR 234
           ++L+  +  +E L   ++ L+  L K        E  ++ K   +  L+    LL  +L+
Sbjct: 179 RKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELK-AELRELELA--LLLAKLK 235

Query: 235 EKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKEL 294
           E    +++L   L + E EL+ L    +  E       L  E ++ +++LE +Q+E  EL
Sbjct: 236 ELRKELEELEEELSRLEEELEELQE--ELEEAEKEIEELKSELEELREELEELQEELLEL 293

Query: 295 KLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNE 354
           K   E E       LRE+ EEL    E+LE  L+E  E    + +  +E++ L + L+  
Sbjct: 294 KEEIE-ELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQL 352

Query: 355 LGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTL 414
           L  ++  K EL+     L        +LE+  +  ++  A+LE E++ IR E  E+K  +
Sbjct: 353 LAELEEAKEELEEKLSALL------EELEELFEALREELAELEAELAEIRNELEELKREI 406

Query: 415 GNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKA 474
            +  +  +R             E L+   EEL+ +  ELE      + L +EL  + ++ 
Sbjct: 407 ESLEERLER-----------LSERLEDLKEELKELEAELEELQTELEELNEELEELEEQL 455

Query: 475 EATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEE 518
           E   + LKE +  ++ L +ELQ LEK+ S  +     LE +   
Sbjct: 456 EELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRA 499

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 62.4 bits (152), Expect = 5e-10
 Identities = 69/358 (19%), Positives = 156/358 (43%), Gaps = 12/358 (3%)

Query: 150  KSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLE 209
            +S   E Q L  +L      +S L  EL+  +  ++EL  E+      + +  ++   LE
Sbjct: 670  RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE 729

Query: 210  EERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNAR 269
            +E ++  +R+E L++ ++ L  E+      +++L + +++ E +L  L     +  LN  
Sbjct: 730  QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKL-----EEALNDL 784

Query: 270  ASSLLVER-DDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLD 328
             + L   R  + + +L  +++E   ++     E      RL  +KE L +  ++L+    
Sbjct: 785  EARLSHSRIPEIQAELSKLEEEVSRIEARL-REIEQKLNRLTLEKEYLEKEIQELQEQRI 843

Query: 329  EACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQ 388
            +  E   +I    +E ++L    +     ++ L+  L+  +  L   + E  +LE QL++
Sbjct: 844  DLKEQIKSIE---KEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRE 900

Query: 389  SKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQN 448
             +    +LE +I + R   +E+K  L    +E     +    +    +E L  + E++Q 
Sbjct: 901  LERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEEL--SLEDVQA 958

Query: 449  VSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDK 506
                +E      + +    +  Y++     ++LKE++  +    K +    ++  K K
Sbjct: 959  ELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKK 1016

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 62.4 bits (152), Expect = 6e-10
 Identities = 108/558 (19%), Positives = 223/558 (39%), Gaps = 57/558 (10%)

Query: 102 TQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQ---LKSAKEEQQL 158
                    + LE  K  L+E+ A +    ++ E++L+  + +  +    L   +E+ + 
Sbjct: 289 ELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEE 348

Query: 159 LMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDR 218
           L  +L S    +  L  EL+  +  +EEL  ++++L++ + +      +L  E ++   R
Sbjct: 349 LKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEAR 408

Query: 219 IEGLQDKINLLSLELREKDDG-----VQKLSSSLQQKETELKNLNSVYKQNELNARASSL 273
           +E L+D+   L  E+ E         +++L + L++ E EL+ L    +   L      L
Sbjct: 409 LERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQE--ELERLEEALEEL 466

Query: 274 LVERDDSKQKLEAVQKEYKELK------------LSSENETASNAKRLREKKEELHQL-- 319
             E ++++Q L+A ++E  +L+            L   +E      + +     +  +  
Sbjct: 467 REELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLS 526

Query: 320 -----KEKLELTLDEACENRA---TIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQET 371
                 E  E  ++ A   R     +      K  +  +  NELG V  L  +     E 
Sbjct: 527 ELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEI 586

Query: 372 LETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAE------VKHTLGNSLDEAKRSG 425
               R       K ++       DL     ++R   +       V   L N+L+ AK+  
Sbjct: 587 QGNDREIL----KNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLR 642

Query: 426 E-----VLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATAND 480
                  L G+L     V+   S +          T  +    R+E+  + +K E     
Sbjct: 643 PGYRIVTLDGDLVRPGGVITGGSAK----------TNSSILERRREIEELEEKIEELEEK 692

Query: 481 LKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKA 540
           + E ++ ++ L KEL+ LE++  + ++  + L   +    K L  +     +L + + + 
Sbjct: 693 IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL 752

Query: 541 NSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEEL 600
           + +++ LE E   L + L E +    E+   +E+    + +L +E K+L +   +L  EL
Sbjct: 753 SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL 812

Query: 601 ASAKGEILRLRSQINSSK 618
                E   LR ++ S +
Sbjct: 813 TLLNEEAANLRERLESLE 830

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 62.4 bits (152), Expect = 6e-10
 Identities = 83/416 (19%), Positives = 172/416 (41%), Gaps = 63/416 (15%)

Query: 164  NSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQ 223
               N++I    +E++  +  IEEL  +I  L+ +L +  ++   LEEE +Q    +E L 
Sbjct: 666  AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS 725

Query: 224  DKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQK 283
             +I+ L  +L   +  V++L   + Q   EL  L +  +  EL  R      E  +++ +
Sbjct: 726  RQISALRKDLARLEAEVEQLEERIAQLSKELTELEA--EIEELEERLEEAEEELAEAEAE 783

Query: 284  LEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQE 343
            +E ++ + ++LK     E  +  + L E + EL  L E+                     
Sbjct: 784  IEELEAQIEQLK----EELKALREALDELRAELTLLNEEA-------------------- 819

Query: 344  KDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRI 403
              +LR+ L++    +   +  L+  +E +E    +   L  ++++ ++   +LE+E+   
Sbjct: 820  -ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESEL--- 875

Query: 404  RAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSL 463
                         +L   + S E     L   +  L++ SEEL+ +  +        + L
Sbjct: 876  ------------EALLNERASLEE---ALALLRSELEELSEELRELESKRSELRRELEEL 920

Query: 464  RKELVNIYKKAEATANDLKEQKEIVSSL-NKELQALEKQTSKDKEARKSLETDLEEATKS 522
            R++L  +  + E     +   +E +S   +  L+  E   +K ++  +     L+     
Sbjct: 921  REKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENK 980

Query: 523  LDEM---NRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDA 575
            + E+   N  A+E  + L++               Y  LT QK    E++E +E+A
Sbjct: 981  IKELGPVNLAAIEEYEELKER--------------YDFLTAQKEDLTEAKETLEEA 1022

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 61.3 bits (149), Expect = 1e-09
 Identities = 100/544 (18%), Positives = 208/544 (38%), Gaps = 22/544 (4%)

Query: 110 DATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTT 169
           +   E +K  +KE +A I  LE      L++ ++      +  KE ++L   +       
Sbjct: 170 EKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEE 229

Query: 170 ISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLL 229
           +    + L+     +EE +  ++ L+  LL+    +    + R+++L  +E L +++   
Sbjct: 230 LEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEK 289

Query: 230 SLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQK 289
              L E +  +++L   L+     L+ L  + ++        SL    +  ++KLE ++ 
Sbjct: 290 IERLEELEREIEELEEELEGLRALLEELEELLEK------LKSLEERLEKLEEKLEKLES 343

Query: 290 EYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRK 349
           E +EL           AK L E+ +EL +  E+LE  L++A E    + +  QE  +   
Sbjct: 344 ELEELAEEKNEL----AKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELA 399

Query: 350 MLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFA- 408
            L   L  ++    EL+   E LE    E  +  K+L++  +     E  I+ +      
Sbjct: 400 ELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEK 459

Query: 409 ------EVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDS 462
                 E+       L E          E  + ++   +  EE++ +  EL    E    
Sbjct: 460 CPVCGQELPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIE 519

Query: 463 LRKELVNIYKKAEATANDLKEQKE--IVSSLNKELQALEKQTSKDKEARKSLETDLEEAT 520
           L +    + ++ E     L+   E         +LQ L+++  + ++  + L+  LEE  
Sbjct: 520 LLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELR 579

Query: 521 KSLDEMN--RNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNL 578
                        E  K L+K   ++     +   L +SL E     NE  E  E+  + 
Sbjct: 580 LLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSL-ELSEAENELEEAEEELESE 638

Query: 579 VMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSKTLVNDENPRKVEDDNKVPVT 638
           + +L  + +  +     LEE     +     +R ++   +     E   +  +  +  + 
Sbjct: 639 LEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELE 698

Query: 639 AKKT 642
             + 
Sbjct: 699 QLRE 702

Length = 908

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 59.7 bits (145), Expect = 4e-09
 Identities = 62/314 (19%), Positives = 133/314 (42%), Gaps = 11/314 (3%)

Query: 105 EKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQ--RTKQLKSAKE--EQQLLM 160
           +K+     LE ++  ++  +  I    +  E +L+ E+E+  R + L   K   E   L+
Sbjct: 171 KKEKALEELEEVEENIERLDLIIDEKRQQLE-RLRREREKAERYQALLKEKREYEGYELL 229

Query: 161 NKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEE-RKQKLDRI 219
            +  +       + ++L + +  +E+L  EI  L+  L +  +    L ++ +    +  
Sbjct: 230 KEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQ 289

Query: 220 EGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDD 279
             +++KI  L  E+   +  + +    L+  E  L  L +    ++L A    L  E ++
Sbjct: 290 LRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEI--DKLLAEIEELEREIEE 347

Query: 280 SKQKLEAVQKEYKELK---LSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRAT 336
            +++ + + +EY ELK        E     K   E ++EL   +EKLE    E  E +  
Sbjct: 348 ERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRE 407

Query: 337 IAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADL 396
           + +  +E   L + L +    +  ++ ++   +E  E    E    E +L+Q     +  
Sbjct: 408 LDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKY 467

Query: 397 ETEISRIRAEFAEV 410
           E E+  ++ E+  V
Sbjct: 468 EQELYDLKEEYDRV 481

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 57.4 bits (139), Expect = 2e-08
 Identities = 70/356 (19%), Positives = 149/356 (41%), Gaps = 26/356 (7%)

Query: 176 ELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELRE 235
           EL+  +  IE L + ID  +  L +   ++   E  +    ++ E    +   L  E   
Sbjct: 178 ELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREY---EGYELLKEKEA 234

Query: 236 KDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAV----QKEY 291
            +   + +   L   E EL+ L    + +EL  R   +    ++  +K++ +    Q   
Sbjct: 235 LERQKEAIERQLASLEEELEKLTE--EISELEKRLEEIEQLLEELNKKIKDLGEEEQLRV 292

Query: 292 KELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKML 351
           KE     E E AS  + + EK+ EL   +E+L     E       I K   E ++L + +
Sbjct: 293 KEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAE-------IDKLLAEIEELEREI 345

Query: 352 DNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVK 411
           + E      L  E    +E LE  R E  +++K+  +++D   D   ++ +++ E  E+K
Sbjct: 346 EEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELK 405

Query: 412 HTLGNSLDEAKRSGEVLA----------GELFAAKEVLKKASEELQNVSHELEATAENRD 461
             L    +E +R  E LA           ++   +E  +  + E++    +LE  A +  
Sbjct: 406 RELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLS 465

Query: 462 SLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLE 517
              +EL ++ ++ +    +L + +  ++    + +A E++    +   + L+  ++
Sbjct: 466 KYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQ 521

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 57.0 bits (138), Expect = 3e-08
 Identities = 76/289 (26%), Positives = 133/289 (46%), Gaps = 16/289 (5%)

Query: 336 TIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNE-------ASDLEKQLKQ 388
            I++  + K + R+ +  E   +   K   + T+  LE TR          ++LE+QLK 
Sbjct: 145 KISEIIEAKPEERRAIFEEAAGISKYKERRKETERKLERTRENLDRLEDILNELERQLK- 203

Query: 389 SKDSCADLETEISRIRAEFAEVKHTL-GNSLDEAKRSGEVLAGELFAAKEVLKKASEELQ 447
           S +  A+       ++AE  E++  L    L+E +        EL   +E LK+A EEL+
Sbjct: 204 SLERQAEKAERYKELKAELRELELALLVLRLEELRE-------ELEELQEELKEAEEELE 256

Query: 448 NVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKE 507
            ++ EL+   E  + LR E+  + ++ E    +L      +S L ++ Q L ++ +  + 
Sbjct: 257 ELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLER 316

Query: 508 ARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANE 567
             + LE  LEE    LDE+     EL + LE+   ++ +LE E   L   L E +S   E
Sbjct: 317 QLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE 376

Query: 568 SRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINS 616
             E +E   + V +L  +  SL+   ++LE  L   +    RL+ +I  
Sbjct: 377 LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEE 425

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 55.5 bits (134), Expect = 7e-08
 Identities = 61/241 (25%), Positives = 116/241 (48%), Gaps = 11/241 (4%)

Query: 376 RNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAA 435
           + E  +LE++L + +     LE E+  ++ E   ++    + L+E +R  E L  +L   
Sbjct: 666 KRELKELEEELAELEAQLEKLEEELKSLKNELRSLE----DLLEELRRQLEELERQL--- 718

Query: 436 KEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKEL 495
            E LK+    L+    ELE      + L +EL  + ++ E     L+E +E + SL + L
Sbjct: 719 -EELKRELAALEE---ELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEAL 774

Query: 496 QALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLY 555
             L+++  + +E R++L+ +LEE  + L+E  R    L + LE    +   LE E   L 
Sbjct: 775 AKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELE 834

Query: 556 KSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQIN 615
           + + E +   +E  E +E+    +  L +E + L+   ++LE+EL   + E   L  ++ 
Sbjct: 835 EEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELR 894

Query: 616 S 616
            
Sbjct: 895 E 895

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 55.1 bits (133), Expect = 9e-08
 Identities = 122/572 (21%), Positives = 250/572 (43%), Gaps = 61/572 (10%)

Query: 103 QNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNK 162
           +   K  +  LE +   + E  + +  L ++ E     + E+  K+L+  KEE + L  +
Sbjct: 192 EELIKEKEKELEEVLREINEISSELPELREELE-----KLEKEVKELEELKEEIEELEKE 246

Query: 163 LNSANTTISGLGKELQNEKRFIEELRIEIDSLQ------TSLLKFGEDKRTLEEERKQKL 216
           L S   +   L ++++  +  IEEL+ EI+ L+        L +  E+   L E  ++ L
Sbjct: 247 LESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYL 306

Query: 217 DRIEGLQDKINLLSLELREKDDGVQKLSS------SLQQKETELKN-LNSVYKQNELNAR 269
           D +  ++ +++ L  E+   ++ +++L         L++K  EL+  L  + +++EL   
Sbjct: 307 DELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEE 366

Query: 270 ASSLLVERDDSKQKL-----EAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLE 324
           A +   E +  K++L     E ++KE +EL+ + E E      ++  +  EL +  ++L+
Sbjct: 367 AKAKKEELERLKKRLTGLTPEKLEKELEELEKAKE-EIEEEISKITARIGELKKEIKELK 425

Query: 325 LTLDE--ACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDL 382
             ++E    + +  +      ++  +++L+     +K ++ EL+  +E     R E  +L
Sbjct: 426 KAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELREL 485

Query: 383 EKQLKQSK---------DSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELF 433
           EK LK+           +   +LE ++ +   E  E K      L E          +L 
Sbjct: 486 EKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKE-------KLIKLK 538

Query: 434 AAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATA-NDLKEQKEIVSSLN 492
              + LKK  E+L+ +  +L    +  D L +EL  + K+ E      ++E +E +  L 
Sbjct: 539 GEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELE 598

Query: 493 K------ELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANS---- 542
                  EL+  EK+  ++++  K LE +L++A + L E  +   EL K LE+       
Sbjct: 599 PFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSE 658

Query: 543 ----QISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEE 598
               ++     E +     L  +     + RE ++     +    +ER+   K  +KLE+
Sbjct: 659 EEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEK 718

Query: 599 ELASAKGEILRLRSQINSSKTLVNDENPRKVE 630
               A   +  LR ++   K L+ +    KV 
Sbjct: 719 ----ALERVEELREKVKKYKALLKERALSKVG 746

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 55.1 bits (133), Expect = 1e-07
 Identities = 58/229 (25%), Positives = 101/229 (44%), Gaps = 13/229 (5%)

Query: 103 QNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLL--- 159
           + E +  +  LE  +  L E EA I  LE   E +L+ E +   + L   + E  LL   
Sbjct: 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIE-QLKEELKALREALDELRAELTLLNEE 818

Query: 160 ----MNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQK 215
                 +L S    I+   + L++ +  IEEL  +I+SL   + +  E    LE E +  
Sbjct: 819 AANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL 878

Query: 216 LDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLV 275
           L+    L++ + LL  EL E  + +++L S   +   EL+ L    K  +L  R   L V
Sbjct: 879 LNERASLEEALALLRSELEELSEELRELESKRSELRRELEELRE--KLAQLELRLEGLEV 936

Query: 276 ERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLE 324
             D+ +++L        E   + EN+   + +  R     L +L+ K++
Sbjct: 937 RIDNLQERLSEEYSLTLEEAEALENKIEDDEEEAR---RRLKRLENKIK 982

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 53.5 bits (129), Expect = 3e-07
 Identities = 91/468 (19%), Positives = 200/468 (42%), Gaps = 40/468 (8%)

Query: 132 KDFESKLQNEQEQRTKQLKSAKEEQQL--LMNKLNSANTTISGLGKELQNEKRFIEELRI 189
           +   S  +   +Q   Q++  KEE+ L   +N L S    +    +  + ++    E R 
Sbjct: 179 ERVLSDQRGSLDQLKAQIE-EKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRD 237

Query: 190 EIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQ 249
           E D +     +  E+  TLE E       IE L++ I   +   RE+++  +++    ++
Sbjct: 238 EADEVLEEHEERREELETLEAE-------IEDLRETI---AETEREREELAEEVRDLRER 287

Query: 250 KETELKNLNSVYKQNEL-NARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKR 308
            E   +  + +  +  L +A A ++   R++ + + E ++   +E +++++      A+ 
Sbjct: 288 LEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQ-AHNEEAES 346

Query: 309 LRE-----------KKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGN 357
           LRE            +EE  +L+ +LE   +   + R  I +  +E ++LR+   +   +
Sbjct: 347 LREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVD 406

Query: 358 VKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNS 417
           + N +  L+  +E  +  R   ++LE  L+ +++     E E      +  E    +  S
Sbjct: 407 LGNAEDFLEELREERDELREREAELEATLRTARERVE--EAEALLEAGKCPECGQPVEGS 464

Query: 418 -----LDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYK 472
                ++E +   E L  EL   +E +++  E L+    +L    +  + L +   ++ +
Sbjct: 465 PHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAE-DLVEAEDRIERLEERREDLEE 523

Query: 473 KAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALE 532
                   ++E++E    L +    LE +  + +EA    E + EEA + + E+N    E
Sbjct: 524 LIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAE 583

Query: 533 LSKNLEKAN------SQISNLEDEKAVLYKSLTEQKSIANESRENMED 574
           L + +E         + I++ EDE   L +       + +E RE + +
Sbjct: 584 LKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAE 631

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 52.8 bits (127), Expect = 5e-07
 Identities = 53/202 (26%), Positives = 97/202 (48%)

Query: 421 AKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATAND 480
           +   G        A K  LK+  EEL  +  +LE   E   SL+ EL ++    E     
Sbjct: 651 SITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQ 710

Query: 481 LKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKA 540
           L+E +  +  L +EL ALE++  + +   + LE +LEE  + L+E+     EL + LE  
Sbjct: 711 LEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESL 770

Query: 541 NSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEEL 600
              ++ L++E   L +     +    E  E +E+A   +  L +E +SL++R ++LE+E+
Sbjct: 771 EEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEI 830

Query: 601 ASAKGEILRLRSQINSSKTLVN 622
              + EI  L  +++  +  + 
Sbjct: 831 EELEEEIEELEEKLDELEEELE 852

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 52.8 bits (127), Expect = 5e-07
 Identities = 103/520 (19%), Positives = 218/520 (41%), Gaps = 26/520 (5%)

Query: 119 RLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQ 178
            L+E+ A +   ++  E       E  + +L++ K  ++ L  +L      +    + L+
Sbjct: 236 ALEERLAELEEEKERLEELKARLLEIESLELEALKIREEEL-RELERLLEELEEKIERLE 294

Query: 179 NEKRFIEELR---IEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELRE 235
             +R IEEL      + +L   L +  E  ++LEE  ++  +++E L+ ++  L+ E  E
Sbjct: 295 ELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNE 354

Query: 236 KDDGVQKLSSSLQQKETELKN--LNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKE 293
               +++    L+++  EL+     ++ +  +L      L  E  +    LE +Q+E +E
Sbjct: 355 LAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEE 414

Query: 294 LKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAK---FTQEKDDLRKM 350
           L+   E       + L E+ ++L +   +LE       E      K     QE  +  + 
Sbjct: 415 LEKELEELERE-LEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEK 473

Query: 351 LDNELGNVKNLKYELQITQETLETT-RNEASDLEKQLKQSKDSCADLETEISRIRAEFAE 409
              EL  ++  + E ++++E  E   R E  +LEK+L++ ++   +L      ++ E  E
Sbjct: 474 ELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEE 533

Query: 410 VKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKEL-- 467
               L N L+E +   E         K  L++  EEL+ +   L+   E  + LR     
Sbjct: 534 KLEKLENLLEELEELKE---------KLQLQQLKEELRQLEDRLQELKELLEELRLLRTR 584

Query: 468 VNIYKKAEATANDLKEQKEIVSSLNKELQALEK--QTSKDKEARKSLETDLEEATKSLDE 525
               ++      +LK++ + +     +L+ L +  + S+ +   +  E +LE   + L+ 
Sbjct: 585 KEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNL 644

Query: 526 MNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQE 585
                  L   LE+   ++  LE E     + +  ++ +  +  E  +    L     + 
Sbjct: 645 QAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREEL 704

Query: 586 RKSLDK--RSKKLEEELASAKGEILRLRSQINSSKTLVND 623
            + L K    ++L EEL S K E+  L+ ++   +  +  
Sbjct: 705 EELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALEL 744

Length = 908

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 52.4 bits (126), Expect = 7e-07
 Identities = 49/203 (24%), Positives = 98/203 (48%)

Query: 416 NSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAE 475
            S    KR  + L  EL   +  L+K  EEL+++ +EL +  +  + LR++L  + ++ E
Sbjct: 660 RSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLE 719

Query: 476 ATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSK 535
               +L   +E +  L   L+ LE++  + +E  + L+  LEE  + L+ +     +L +
Sbjct: 720 ELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKE 779

Query: 536 NLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKK 595
            +E+   +   L++E   L + L E +   +     +E       RL QE + L++  ++
Sbjct: 780 EIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEE 839

Query: 596 LEEELASAKGEILRLRSQINSSK 618
           LEE+L   + E+  L  ++   K
Sbjct: 840 LEEKLDELEEELEELEKELEELK 862

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 52.4 bits (126), Expect = 7e-07
 Identities = 54/265 (20%), Positives = 116/265 (43%), Gaps = 25/265 (9%)

Query: 381 DLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKR-----------SGEVLA 429
           + E++L++++++   LE  +  +  +  +    L    ++A+R              +L 
Sbjct: 176 EAERKLERTEENLERLEDLLEELEKQLEK----LERQAEKAERYQELKAELRELELALLL 231

Query: 430 GELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVS 489
            +L   ++ L++  EEL  +  ELE   E  +   KE+  +  + E    +L+E +E + 
Sbjct: 232 AKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELL 291

Query: 490 SLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLED 549
            L +E++ LE + S  +E  + LE +LEE  + L+E+      L + LE+  + +  LE 
Sbjct: 292 ELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQ 351

Query: 550 EKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILR 609
             A   +   E+      +     +            ++L +   +LE ELA  + E+  
Sbjct: 352 LLA-ELEEAKEELEEKLSALLEELEELF---------EALREELAELEAELAEIRNELEE 401

Query: 610 LRSQINSSKTLVNDENPRKVEDDNK 634
           L+ +I S +  +   + R  +   +
Sbjct: 402 LKREIESLEERLERLSERLEDLKEE 426

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 52.0 bits (125), Expect = 8e-07
 Identities = 65/305 (21%), Positives = 141/305 (46%), Gaps = 19/305 (6%)

Query: 332 ENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKD 391
           E  A ++K+ + K++  + L+    N++ L+  L+  ++ LE    +A   E+       
Sbjct: 162 EEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAER------- 214

Query: 392 SCADLETEISRIRAEFAEVKH-TLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVS 450
              +L+ E+  +       K   L   L+E +     L  EL   +E L++A +E++ + 
Sbjct: 215 -YQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELK 273

Query: 451 HELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARK 510
            ELE   E  + L++EL+ + ++ E    ++   +E +  L  EL+ LE++  + KE  +
Sbjct: 274 SELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIE 333

Query: 511 SLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRE 570
           +L+ +LEE    L+E+ +   EL +  E+   ++S L +E   L+++L          RE
Sbjct: 334 ALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEAL----------RE 383

Query: 571 NMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSKTLVNDENPRKVE 630
            + +    +  +  E + L +  + LEE L      +  L+ ++   +  + +      E
Sbjct: 384 ELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEE 443

Query: 631 DDNKV 635
            + ++
Sbjct: 444 LNEEL 448

Length = 1163

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 50.0 bits (120), Expect = 3e-06
 Identities = 89/423 (21%), Positives = 174/423 (41%), Gaps = 48/423 (11%)

Query: 109 TDATLEYMKARLKEKEAAIVSLEKDFE------SKLQNEQEQRTKQLKSAKEEQQLLMNK 162
            DA  E ++AR +E E     L    E           E E   +     +E  + L  +
Sbjct: 305 DDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREE 364

Query: 163 LNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGL 222
                + +    + +++ +  IEEL  EI+ L+        D    E+  ++  +  + L
Sbjct: 365 AAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDEL 424

Query: 223 QDKINLLSLELREKDDGVQKLSSSLQQK-----ETELKNLNSVYKQNELNARASSLLVER 277
           +++   L   LR   + V++  + L+          ++    V    E   R   L  E 
Sbjct: 425 REREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAEL 484

Query: 278 DDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLD--------- 328
           +D ++++E V++  +  +     E     +RL E++E+L +L  +   T++         
Sbjct: 485 EDLEEEVEEVEERLERAE--DLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEEL 542

Query: 329 ---------EACENRATIAKFTQEKDDLR---KMLDNELGNVKNLKYELQITQETLETTR 376
                    EA E R   A+  +E ++ R     L+++L  +K     L+  +  L    
Sbjct: 543 RERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIA 602

Query: 377 NEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAK 436
           +   ++E+ L++ +++ A+L  E     AE  E K  L    DEA+         +  A+
Sbjct: 603 DAEDEIER-LREKREALAELNDERRERLAEKRERKRELEAEFDEAR---------IEEAR 652

Query: 437 EVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQ 496
           E  ++A E L+ V  +L+   E RD L+ E+  +    E    +L+E +E   +L   ++
Sbjct: 653 EDKERAEEYLEQVEEKLDELREERDDLQAEIGAV----ENELEELEELRERREALENRVE 708

Query: 497 ALE 499
           ALE
Sbjct: 709 ALE 711

Length = 880

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 50.5 bits (121), Expect = 3e-06
 Identities = 92/506 (18%), Positives = 196/506 (38%), Gaps = 36/506 (7%)

Query: 132 KDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEI 191
              E +L  EQE+R +     +++ + L ++L         L +EL      +   R E+
Sbjct: 273 VADEERLAEEQEERQEAKNRLRQQLRTLEDQLK---EARDELNQELSAANAKLAADRSEL 329

Query: 192 DSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKE 251
           + L+     F ED     E+ +  LD++  ++ ++  +   L       Q     +Q+K 
Sbjct: 330 ELLEDQKGAF-EDADI--EQLQADLDQLPSIRSELEEVEARLDALTGKHQD----VQRKY 382

Query: 252 TELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLRE 311
             LK       + +L      L   R++  ++  A++++ + L+     +  +      E
Sbjct: 383 ERLKQKIKEQLERDLEKNNERLAAIREEKDRQKAAIEEDLQALESQLRQQLEAGKLEFNE 442

Query: 312 KKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQET 371
           ++ EL     +L+  LD A      + +     + L K    E    +    +LQ     
Sbjct: 443 EEYELELRLGRLKQRLDSATATPEELEQLEINDEALEKA-QEEQEQAEANVEQLQSELRQ 501

Query: 372 LETTRNEASDL----EKQLKQSKDSCADLETEIS--------RIRAEFAEVKHTLGNSLD 419
           L   R+EA +     E++L Q + +  +LE ++S         +R E    + ++G  + 
Sbjct: 502 LRKRRDEALEALQRAERRLLQLRQALDELELQLSPQAGSLLHFLRNEAPGWEESIGKVIS 561

Query: 420 EAKRSGEVLAGELF--AAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEAT 477
                   L  +L   +  + L   S +LQ +  ++   A N   LR+ L    +  ++ 
Sbjct: 562 PELLERTDLDPQLVEGSDSDTLYGVSLDLQRL--DVPDYAANETELRERLQQAEEALQSA 619

Query: 478 ANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNL 537
               K+ +E +   N EL+  ++  ++ + A K    DL+      +E      +L   +
Sbjct: 620 VAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQRLQ---NEQQSLKDKLELAI 676

Query: 538 E----KANSQISNLEDEKAVLYKSLTE-QKSIANESRENMEDAHNLVMRLGQERK-SLDK 591
                +A +Q+  L+ +   L +      +++ ++ RE   +       +  E    L +
Sbjct: 677 AERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDDFRELRTERLAKWQVVEGELDNQLAQ 736

Query: 592 RSKKLEEELASAKGEILRLRSQINSS 617
            S  +E     AK  +  L+ Q +  
Sbjct: 737 LSAAIEAARTQAKARLKELKKQYDRE 762

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 50.0 bits (120), Expect = 4e-06
 Identities = 69/345 (20%), Positives = 136/345 (39%), Gaps = 24/345 (6%)

Query: 297 SSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELG 356
           S   E     +R  E++E+  + +++ +  L+E  E R  +     E +DLR+ +     
Sbjct: 213 SELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETER 272

Query: 357 NVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGN 416
             + L  E++  +E LE    E  DL   L ++    AD E  +   R E  +    L +
Sbjct: 273 EREELAEEVRDLRERLEELEEERDDL---LAEAGLDDADAEA-VEARREELEDRDEELRD 328

Query: 417 SLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEA 476
            L+E + +               +  +EE +++  + +   E  + LR+E   +  + E 
Sbjct: 329 RLEECRVA--------------AQAHNEEAESLREDADDLEERAEELREEAAELESELEE 374

Query: 477 TANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKN 536
               +++++E +  L +E++ L ++         + E  LEE  +  DE+     EL   
Sbjct: 375 AREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEAT 434

Query: 537 LEKANSQISN----LEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKR 592
           L  A  ++      LE  K        E         E+ E    L   L    + +++ 
Sbjct: 435 LRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEV 494

Query: 593 SKKLE--EELASAKGEILRLRSQINSSKTLVNDENPRKVEDDNKV 635
            ++LE  E+L  A+  I RL  +    + L+ +      E   + 
Sbjct: 495 EERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERA 539

Length = 880

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 49.3 bits (118), Expect = 5e-06
 Identities = 88/465 (18%), Positives = 191/465 (41%), Gaps = 37/465 (7%)

Query: 105 EKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLN 164
           E++    TLE     L+E  A      ++   +++ +  +R ++L+  +++        +
Sbjct: 248 ERREELETLEAEIEDLRETIAETEREREELAEEVR-DLRERLEELEEERDDLLAEAGLDD 306

Query: 165 SANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQD 224
           +    +    +EL++     EELR  ++  + +     E+  +L E+     +R E L++
Sbjct: 307 ADAEAVEARREELEDRD---EELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELRE 363

Query: 225 KINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKL 284
           +   L  EL E  + V+     +++ E E++         EL  R     V+  +++  L
Sbjct: 364 EAAELESELEEAREAVEDRREEIEELEEEIE---------ELRERFGDAPVDLGNAEDFL 414

Query: 285 EAVQKEYKELKLSSENETASNAKRLREKKEELHQLKE-----------KLELTLDEACEN 333
           E +++E  EL+   E E  +  +  RE+ EE   L E           +    ++   E+
Sbjct: 415 EELREERDELR-EREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEED 473

Query: 334 RATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSC 393
           R  + +   E +DL + ++     ++  + +L   ++ +E       DLE+ + + +++ 
Sbjct: 474 RERVEELEAELEDLEEEVEEVEERLERAE-DLVEAEDRIERLEERREDLEELIAERRETI 532

Query: 394 ADLETEISRIRAEF------AEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQ 447
            +       +R         AE K       +E          EL +    LK+  E L+
Sbjct: 533 EEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE 592

Query: 448 NVSHELEATAENRD---SLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSK 504
            +   L A A+  D    LR++   + +  +     L E++E    L  E    E +  +
Sbjct: 593 RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFD--EARIEE 650

Query: 505 DKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLED 549
            +E ++  E  LE+  + LDE+     +L   +    +++  LE+
Sbjct: 651 AREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEE 695

Length = 880

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 48.9 bits (116), Expect = 6e-06
 Identities = 52/301 (17%), Positives = 108/301 (35%), Gaps = 16/301 (5%)

Query: 351 LDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEV 410
           LD+    ++ L+ EL   Q        E      +L++++     +  E++  R   A+ 
Sbjct: 76  LDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKA 135

Query: 411 KHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNI 470
           +  L     +A+     L   L   +  L+  ++ LQ    +L+A+A    S   +L   
Sbjct: 136 QQELARLTKQAQDLQTRL-KTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLR 194

Query: 471 YKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNA 530
             + E  A +L  +     +  +EL            A +     +++    + +  +  
Sbjct: 195 SAQIEQEAQNLATRANAAQARTEELARRA-------AAAQQTAQAIQQRDAQISQKAQQI 247

Query: 531 LELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLD 590
              ++ + +   Q+  LE  +A L + + + ++         + A       GQ      
Sbjct: 248 AARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQAAATQ--RGQVLAGAA 305

Query: 591 KRSKKLEEELASAKGEILRLRSQINSSKTLVNDENPRKVEDDNKVPVTAKKTTRRRKSNS 650
           +R  + + +         +L S  N    L    +PR+       PVT   T RRR +  
Sbjct: 306 QRVAQAQAQ----AQAQAQLLSSANRPAALRLRRSPRRGRRQ--RPVTRHTTRRRRPATR 359

Query: 651 Q 651
           Q
Sbjct: 360 Q 360

Length = 499

>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]

 Score = 48.5 bits (116), Expect = 9e-06
 Identities = 57/290 (19%), Positives = 100/290 (34%), Gaps = 31/290 (10%)

Query: 213 KQKLDR-IEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQ-NELNARA 270
           K +LD  +  L D   L+ LE  E+ +   K    L+  E    +L+S+  +  +     
Sbjct: 15  KSELDPVLAELHD-FGLVHLEDLEEGEKGLKELEKLKVAEVAQISLSSLLSEVLDYLRSV 73

Query: 271 SSLLVERDD---SKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTL 327
             L           +KLEA  K  +E+   +E  ++   +  R+ +E L +L E+LE   
Sbjct: 74  KGLEGRLFILPEEVEKLEAELKSLEEVIKPAEKFSSEVEELTRKLEERLSELDEELEDLE 133

Query: 328 DEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLK 387
           D           +          LD +L  ++ LK+ L                    L 
Sbjct: 134 DL--LEELEPLAY----------LDFDLSLLRGLKFLLVRLGLVRREKLEA-------LV 174

Query: 388 QSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEV----LKKAS 443
              +    L  E   + A    V       LD+  +    L  EL+   E      +  S
Sbjct: 175 GVIEDEVALYGE--NVEASVVIVVAHGAEDLDKVSKILNELGFELYEVPEFDGGPSELIS 232

Query: 444 EELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNK 493
           E  + ++   +     R  L      I ++  A    L+ +K +   L+K
Sbjct: 233 ELEEVIAEIQDELESLRSELEALAEKIAEELLAVREILEIEKALGDVLSK 282

Length = 660

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 48.2 bits (115), Expect = 9e-06
 Identities = 36/214 (16%), Positives = 78/214 (36%), Gaps = 7/214 (3%)

Query: 332 ENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKD 391
           + +  IA   ++  + +         +K+L+         + +   +  +    LK+ + 
Sbjct: 42  QIQKEIAALEKKIREQQDQRAKLEKQLKSLE-------TEIASLEAQLIETADDLKKLRK 94

Query: 392 SCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSH 451
             ADL   ++ +  +  E +  L   L   +RSG      L  + E  +++         
Sbjct: 95  QIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGA 154

Query: 452 ELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKS 511
              A AE  D+L+  L  +       A +  E   ++S    +   L +   + K+    
Sbjct: 155 LNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQ 214

Query: 512 LETDLEEATKSLDEMNRNALELSKNLEKANSQIS 545
           L ++L    K L+E+  N   L   +  A +  +
Sbjct: 215 LNSELSADQKKLEELRANESRLKNEIASAEAAAA 248

Length = 420

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 38/191 (19%), Positives = 90/191 (47%), Gaps = 14/191 (7%)

Query: 445 ELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSK 504
           EL+ +  EL       + L +EL ++  +  +  + L+E +  +  L ++L+ L+++ + 
Sbjct: 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAA 727

Query: 505 DKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSI 564
            +E  + L++ LEE  + L+E+     EL + LE+   ++ +LE+  A L + + E +  
Sbjct: 728 LEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEK 787

Query: 565 ANESRENMEDAHNLVMRLG--------------QERKSLDKRSKKLEEELASAKGEILRL 610
               +E +E+    +                  Q R+ L++  ++LEEE+   + ++  L
Sbjct: 788 RQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDEL 847

Query: 611 RSQINSSKTLV 621
             ++   +  +
Sbjct: 848 EEELEELEKEL 858

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 48.1 bits (115), Expect = 1e-05
 Identities = 84/395 (21%), Positives = 158/395 (40%), Gaps = 45/395 (11%)

Query: 231 LELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKE 290
           LE  E  + V +    L   E   KNL  V K+ +         ++R ++ ++L   +++
Sbjct: 141 LESDESREKVVRQILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEK 200

Query: 291 YKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKM 350
             E  L   NE +S    LRE+ E+L +  ++LE   +E  E              L K 
Sbjct: 201 ELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEE--------------LEKE 246

Query: 351 LDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEV 410
           L++  G+ + L+ +++  +E +E  + E  +LE+++K+ K    +   E  ++   + E 
Sbjct: 247 LESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEY 305

Query: 411 KHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNI 470
                    +  R  E     L      +++  +EL+     LE   +    L K L   
Sbjct: 306 L--------DELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRL-EE 356

Query: 471 YKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNA 530
            ++      + K +KE +  L K L  L                  E+  K L+E+ +  
Sbjct: 357 LEERHELYEEAKAKKEELERLKKRLTGLTP----------------EKLEKELEELEKAK 400

Query: 531 LELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANE----SRE-NMEDAHNLVMRLGQE 585
            E+ + + K  ++I  L+ E   L K++ E K    +     RE   E    L+     E
Sbjct: 401 EEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAE 460

Query: 586 RKSLDKRSKKLEEELASAKGEILRLRSQINSSKTL 620
            K ++K  K++EE+    + E+  L   +     L
Sbjct: 461 LKRIEKELKEIEEKERKLRKELRELEKVLKKESEL 495

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 49/206 (23%), Positives = 92/206 (44%), Gaps = 10/206 (4%)

Query: 430 GELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVS 489
           G LF+  E       ELQ +   LE       SL+ EL  I  + +  + +L +    + 
Sbjct: 665 GILFSRSE-----PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIG 719

Query: 490 SLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLED 549
            + KE++ LE++  K KE  + LE DL    + ++ +     EL   +E+    +  LE+
Sbjct: 720 EIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEE 779

Query: 550 EKAVLYKSLTEQ--KSIANESRENMEDAHNLVMRLGQERKSLDKRSKK---LEEELASAK 604
               L   L+      I  E  +  E+   +  RL +  + L++ + +   LE+E+   +
Sbjct: 780 ALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQ 839

Query: 605 GEILRLRSQINSSKTLVNDENPRKVE 630
            + + L+ QI S +  + + N +K E
Sbjct: 840 EQRIDLKEQIKSIEKEIENLNGKKEE 865

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 47.7 bits (113), Expect = 2e-05
 Identities = 73/536 (13%), Positives = 172/536 (32%), Gaps = 7/536 (1%)

Query: 113 LEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRT----KQLKSAKEEQQLLMNKLNSANT 168
            E  + +L+E+E  +++ E++       + E+R     ++LK +++E + L  +L     
Sbjct: 277 EEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKE 336

Query: 169 TISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINL 228
            I  L KEL+  +   E    E + L+    K  + +  L  ++K + +R+         
Sbjct: 337 EIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEE 396

Query: 229 LSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQ 288
                 E++   + L    +Q+E  LK       +       S    +   +++K E  +
Sbjct: 397 ELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEK 456

Query: 289 KEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLR 348
           +  K LK   E + + +  +  +  + L QL+  L     E    + + A+         
Sbjct: 457 QALKLLKDKLELKKSEDLLKETKLVKLLEQLELLLLRQKLEEASQKESKAREGLAVLLAL 516

Query: 349 KMLDNEL-GNVKNLKYELQITQETLETTRNEASDLEK--QLKQSKDSCADLETEISRIRA 405
                 L       +                 + + +   +    D    L   ++ +  
Sbjct: 517 IKDGVGLRIISAAGRGGDLGVAVANYKVAISVAVIVEVSAVADEVDERQKLVRALTELPL 576

Query: 406 EFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRK 465
                           K    +         ++ K   E  ++           +D+   
Sbjct: 577 PARTFVLLDPLLKLPLKSIAVLEIDPALNLAQLNKATLEADEDDKRAKVVEGILKDTELT 636

Query: 466 ELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDE 525
           +L+   K  E+        +E ++  ++   +L + T +    ++  E    E  K+   
Sbjct: 637 KLLESAKAKESGLRKGVSLEEGLAEKSELKASLSELTKELLAEQELQEKAESELAKNEIL 696

Query: 526 MNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQE 585
             +  ++  +   K   +   LE E+ +  K    Q  I  E +   +          + 
Sbjct: 697 RRQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKLLEQKIKEKEEEEEKS 756

Query: 586 RKSLDKRSKKLEEELASAKGEILRLRSQINSSKTLVNDENPRKVEDDNKVPVTAKK 641
           R   ++  ++  E     K                  +E  +  E++ +      K
Sbjct: 757 RLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELK 812

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 47.3 bits (113), Expect = 2e-05
 Identities = 41/183 (22%), Positives = 88/183 (48%), Gaps = 5/183 (2%)

Query: 444 EELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQ-T 502
           E+L+ +  + E+  E      + +++  K+      D++E K ++ +L + L+   ++  
Sbjct: 285 EQLEELIDKYESHIEKALEELESILDTEKENSEFKLDVEELKALLEALEEILEKNLQKLE 344

Query: 503 SKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQK 562
            K K+   S+E  LE  T  ++ +N     +++ + + N +I NL+ EK    K L    
Sbjct: 345 EKLKDPSTSIE--LESITDLIESINDIIDAINELIREHNEKIDNLKKEKNKAKKKL--WL 400

Query: 563 SIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSKTLVN 622
            +  E +E+++        L +   SL+K  K+LE E+ + + EI  L  Q+ + +   +
Sbjct: 401 HLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKELEKQLTNIEPTAD 460

Query: 623 DEN 625
           + N
Sbjct: 461 EIN 463

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 47.1 bits (112), Expect = 3e-05
 Identities = 100/420 (23%), Positives = 180/420 (42%), Gaps = 36/420 (8%)

Query: 117 KARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKE 176
              L E++  +  L ++   +L+   E+  K+L+ A E  + L   +      ++ L   
Sbjct: 345 LEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAA 404

Query: 177 LQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDR------IEGLQDKINLLS 230
           L+  +  +EEL  E++ L+  L +  E+ + LEE+  Q   +      + G  +K  +  
Sbjct: 405 LEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCG 464

Query: 231 LELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKE 290
            EL E+          L+  E EL+ L     + +  A     + E +   ++LE    E
Sbjct: 465 QELPEE-----HEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIE 519

Query: 291 YKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKM 350
             EL+ + + E     ++L    EEL +LKEKL+L   +  E    +    QE  +L + 
Sbjct: 520 LLELEEALKEELEEKLEKLENLLEELEELKEKLQL--QQLKEELRQLEDRLQELKELLEE 577

Query: 351 LDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSC------ADLETEISRIR 404
           L       + L+ EL+   + L+    E  +   QL++   S        +LE     + 
Sbjct: 578 LRLLRTRKEELE-ELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELE 636

Query: 405 AEF------AEVKHTLGNSLDEAKRSGEVLAGELF------AAKEVLKKASEELQNVSHE 452
           +E       AE++  L  +L+E +   E L  E+         +E L++  EEL+ +  E
Sbjct: 637 SELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEE 696

Query: 453 LEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSL 512
           LE   E  + L K+L     + E    +L+ +K  +  L KEL+ LEK     +E R+ L
Sbjct: 697 LEQLREELEELLKKL----GEIEQLIEELESRKAELEELKKELEKLEKALELLEELREKL 752

Length = 908

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 53/278 (19%), Positives = 112/278 (40%), Gaps = 11/278 (3%)

Query: 348 RKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEF 407
           +++LD   G  K  K    + +E ++  + +  +LE QL +  +   D+E  +  +  E 
Sbjct: 157 KEILDELFGLEKYEKLSELL-KEVIKEAKAKIEELEGQLSELLE---DIEDLLEALEEEL 212

Query: 408 AEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKEL 467
            E+K       ++ +        EL    E L++   EL+     LE        +    
Sbjct: 213 KELKKLEEIQEEQEEE-------ELEQEIEALEERLAELEEEKERLEELKARLLEIESLE 265

Query: 468 VNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMN 527
           +   K  E    +L+   E +    + L+ LE++  + +E  + L   LEE  + L+++ 
Sbjct: 266 LEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLK 325

Query: 528 RNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERK 587
                L K  EK     S LE+      +     +    E  E +E+    + +  +  K
Sbjct: 326 SLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLK 385

Query: 588 SLDKRSKKLEEELASAKGEILRLRSQINSSKTLVNDEN 625
            L++  ++L+EELA     +  ++ ++   +  + +  
Sbjct: 386 QLEEAIQELKEELAELSAALEEIQEELEELEKELEELE 423

Length = 908

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 46.9 bits (112), Expect = 3e-05
 Identities = 72/395 (18%), Positives = 139/395 (35%), Gaps = 63/395 (15%)

Query: 173 LGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLE 232
           LG+E    +  IEEL+ E+  L+  + +   +    EEE ++         DK       
Sbjct: 86  LGEENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKA---KNKFLDKA--WKKL 140

Query: 233 LREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDS-KQKLEAVQKEY 291
            ++ D  + +    L  K+   + L    K   LNA +   L E     K    + + E 
Sbjct: 141 AKKYDSNLSEALKGLNYKKNFKEKLLKELKSVILNASSLLSLEELKAKIKTLFSSNKPEL 200

Query: 292 KELKLSSENETASNAKRLREKK---------EELHQ-------LKEKLELTLDEA----C 331
             L LS  +        + EK           EL         +KE LE   +      C
Sbjct: 201 ALLTLSVIDFDEIEQAEILEKSIIGSSDVPISELINNLGNSDWVKEGLEYHEEGDTCPFC 260

Query: 332 ENRATIAKFTQE-KDDLRKMLDNELGNVKNLKYELQITQETLETTRNEA-------SDLE 383
           +        T+E K +L    D E    + L  +L+   +  E+   +A        D E
Sbjct: 261 QQ-----TITEERKAELEAHFDEE---YQELIEQLEELIDKYESHIEKALEELESILDTE 312

Query: 384 KQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEA--KRSGEVLAGELFAAKEVLKK 441
           K+  + K    +L+  +  +     +    L   L +       E +   + +  +++  
Sbjct: 313 KENSEFKLDVEELKALLEALEEILEKNLQKLEEKLKDPSTSIELESITDLIESINDIIDA 372

Query: 442 ASEELQN-------------------VSHELEATAENRDSLRKELVNIYKKAEATANDLK 482
            +E ++                      H +    E+ D+ +KE   + K   +   ++K
Sbjct: 373 INELIREHNEKIDNLKKEKNKAKKKLWLHLVAELKEDIDAYQKEKKGLEKAINSLEKEIK 432

Query: 483 EQKEIVSSLNKELQALEKQTSKDKEARKSLETDLE 517
           + +  + +L KE++ LEKQ +  +     +   L+
Sbjct: 433 QLEAEIKALEKEIKELEKQLTNIEPTADEINKLLK 467

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like

 Score = 46.9 bits (111), Expect = 3e-05
 Identities = 63/252 (25%), Positives = 110/252 (43%), Gaps = 36/252 (14%)

Query: 107 KATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSA 166
           +  +A LE MK  LK++   +    +D E+    E+     + +   E+ + L  +L S+
Sbjct: 247 QDIEAELERMKGELKQRLKKMTIQRRDEET----ERIDLQLENEQLHEDLRTLQERLESS 302

Query: 167 NTTISGLGKELQN----EKRFIEEL-RIEIDSLQTSL------LKFGEDKRTLEEERKQK 215
                 LG+EL +        I EL +  ++S Q SL      L   E +    +ER+  
Sbjct: 303 QQKAGLLGEELASLGSLRDHTIAELHQSRLESAQMSLQLSQLNLALKEGQSQWAQERETL 362

Query: 216 LDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLV 275
               E  +D+I  LS EL + ++ +Q+  S  ++ E EL                    +
Sbjct: 363 RQSAEADKDRIQKLSAELLKLEEWLQEERSQREKLEVELG-------------------I 403

Query: 276 ERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLD-EACENR 334
           E+D ++ +L   ++E  EL+ S+        ++L+E+K+EL      LEL LD EA E  
Sbjct: 404 EKDCNRVQLSENRRELSELR-SALRVLQKEKEQLQEEKQELLDYIRVLELRLDKEADEKW 462

Query: 335 ATIAKFTQEKDD 346
           A  A   ++   
Sbjct: 463 AEDAATCEDAKS 474

Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region. Length = 546

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 46.2 bits (110), Expect = 5e-05
 Identities = 43/196 (21%), Positives = 90/196 (45%), Gaps = 6/196 (3%)

Query: 100 ALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLL 159
           A  + E +  +  L  ++A + +  A I  LE++ E + +  +++ T++    KEE + L
Sbjct: 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEE-RKRRDKLTEEYAELKEELEDL 369

Query: 160 MNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRI 219
             +L   +   +    EL++ +  +E+L+ EI+ L+  L +  E+ + L EE       I
Sbjct: 370 RAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAI 429

Query: 220 EGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVY-----KQNELNARASSLL 274
            G++ KIN L  E  +K   ++K    L+Q   +L            + + +    S L 
Sbjct: 430 AGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQ 489

Query: 275 VERDDSKQKLEAVQKE 290
            E  +++ +  A ++ 
Sbjct: 490 RELAEAEAQARASEER 505

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 46.2 bits (110), Expect = 6e-05
 Identities = 77/417 (18%), Positives = 183/417 (43%), Gaps = 31/417 (7%)

Query: 205 KRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQN 264
           ++ LEE   Q  + +  L+ K      EL E+ + +QK  +  ++++++L+        +
Sbjct: 108 RKDLEEANLQHEEALATLRKKHQDAINELSEQIEQLQKQKAKAEKEKSQLQAEV-----D 162

Query: 265 ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSE------NETASNAKRLREKKEELHQ 318
           +L A+   +   + ++++K + ++ +  EL++  +      N+  S   RL+ +  +L +
Sbjct: 163 DLLAQLDQIAKAKLNAEKKAKQLESQLSELQVKLDELQRQLNDLTSQKSRLQSENSDLTR 222

Query: 319 LKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNE 378
             E+ E  +    + ++   +   + ++ ++ L+ E     NL+ +L+  +  L++ R  
Sbjct: 223 QLEEAEAQVSNLSKLKS---QLESQLEEAKRSLEEESRERANLQAQLRQLEHDLDSLRE- 278

Query: 379 ASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEV 438
                 QL++  ++ A+LE ++S+  AE  + +    +      R+ E+        +E+
Sbjct: 279 ------QLEEESEAKAELERQLSKANAEIQQWRSKFESEGAL--RAEEL--------EEL 322

Query: 439 LKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQAL 498
            KK ++++  +    EA     DSL K    +  + E    +L+      S L K+ +  
Sbjct: 323 KKKLNQKISELEEAAEAANAKCDSLEKTKSRLQSELEDLQIELERANAAASELEKKQKNF 382

Query: 499 EKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSL 558
           +K  ++ K     L+ +L+ A +    ++     L   LE+   Q+  L  E   L   +
Sbjct: 383 DKILAEWKRKVDELQAELDTAQREARNLSTELFRLKNELEELKDQVEALRRENKNLQDEI 442

Query: 559 TEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQIN 615
            +      E   N+ +      RL  E+  L    ++ E  L   + ++LR + +++
Sbjct: 443 HDLTDQLGEGGRNVHELEKARRRLEAEKDELQAALEEAEAALELEESKVLRAQVELS 499

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 45.8 bits (109), Expect = 7e-05
 Identities = 115/529 (21%), Positives = 214/529 (40%), Gaps = 65/529 (12%)

Query: 122 EKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEK 181
           + E   +  + D  +K +   E++ KQL+S   E Q+ +++L      ++     LQ+E 
Sbjct: 158 QAEVDDLLAQLDQIAKAKLNAEKKAKQLESQLSELQVKLDELQRQLNDLTSQKSRLQSEN 217

Query: 182 ----RFIEELRIEIDSLQTSLLKFG----EDKRTLEEERKQKLD---RIEGLQDKINLLS 230
               R +EE   ++ +L     +      E KR+LEEE +++ +   ++  L+  ++ L 
Sbjct: 218 SDLTRQLEEAEAQVSNLSKLKSQLESQLEEAKRSLEEESRERANLQAQLRQLEHDLDSLR 277

Query: 231 LELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKE 290
            +L E+ +   +L   L +   E++       +++  +  +    E ++ K+KL     E
Sbjct: 278 EQLEEESEAKAELERQLSKANAEIQQW-----RSKFESEGALRAEELEELKKKLNQKISE 332

Query: 291 YKELKLSSENETASNAKRLREKKEELHQLKEKLELTLD----EACENRATIAKFTQEKDD 346
            +E            A+    K + L + K +L+  L+    E     A  ++  +++ +
Sbjct: 333 LEE-----------AAEAANAKCDSLEKTKSRLQSELEDLQIELERANAAASELEKKQKN 381

Query: 347 LRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAE 406
             K+L      V  L+ EL   Q        E   L+ +L++ KD    L  E       
Sbjct: 382 FDKILAEWKRKVDELQAELDTAQREARNLSTELFRLKNELEELKDQVEALRRE----NKN 437

Query: 407 FAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKE 466
             +  H L + L E  R+      EL  A+  L+   +ELQ    E EA  E  +S    
Sbjct: 438 LQDEIHDLTDQLGEGGRN----VHELEKARRRLEAEKDELQAALEEAEAALELEESKVLR 493

Query: 467 LVN------------IYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLET 514
                          + +K E   N  K  +  + SL   L+A  K  ++    +K LE 
Sbjct: 494 AQVELSQIRSEIERRLAEKEEEFENTRKNHQRAIESLQATLEAEAKGKAEASRLKKKLEG 553

Query: 515 DLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMED 574
           D+ E   +LD  N+   E  KN++K   Q+  L+         + E++    ++RE +  
Sbjct: 554 DINELEIALDHANKANAEAQKNVKKYQQQVKELQ-------TQVEEEQRAREDAREQLAV 606

Query: 575 AHNLVMRLGQERK-------SLDKRSKKLEEELASAKGEILRLRSQINS 616
           A      L  E +         ++  K+ E ELA A   +  L +Q +S
Sbjct: 607 AERRATALEAELEELRSALEQAERARKQAETELAEASERVNELTAQNSS 655

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 44/193 (22%), Positives = 85/193 (44%), Gaps = 6/193 (3%)

Query: 103 QNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNK 162
           + + +A    LE  +  L+E E     L  + E   +  +E+ +  L+  +E  + L  +
Sbjct: 329 KEKIEALKEELEERETLLEELEQ----LLAELEEAKEELEEKLSALLEELEELFEALREE 384

Query: 163 LNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGL 222
           L      ++ +  EL+  KR IE L   ++ L   L    E+ + LE E ++    +E L
Sbjct: 385 LAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEEL 444

Query: 223 QDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQ 282
            +++  L  +L E  D +++L   L + + EL+ L    + + L AR   L  E+  S+ 
Sbjct: 445 NEELEELEEQLEELRDRLKELERELAELQEELQRLEK--ELSSLEARLDRLEAEQRASQG 502

Query: 283 KLEAVQKEYKELK 295
               ++     L 
Sbjct: 503 VRAVLEALESGLP 515

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 45/250 (18%), Positives = 102/250 (40%), Gaps = 6/250 (2%)

Query: 103 QNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNK 162
           + E +     +  ++ RL+E E  +  L K  +   + EQ +  +++   + E   L   
Sbjct: 250 EEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERS 309

Query: 163 LNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGL 222
           +      +    + L   +  I++L  EI+ L+  + +  + +  L EE  +  + +E L
Sbjct: 310 IAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDL 369

Query: 223 QDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQ 282
           + ++  +  E  E  D ++     L++ + E+  L    + + L      L  E  D   
Sbjct: 370 RAELEEVDKEFAETRDELKDYREKLEKLKREINELKR--ELDRLQEELQRLSEELADLNA 427

Query: 283 KLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQ 342
            +  ++ +  EL    E E    A  +++++ +L QL   L     E  + +    +  +
Sbjct: 428 AIAGIEAKINEL----EEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEK 483

Query: 343 EKDDLRKMLD 352
           E   L++ L 
Sbjct: 484 ELSKLQRELA 493

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 51/251 (20%), Positives = 100/251 (39%), Gaps = 16/251 (6%)

Query: 95   LGALYA-LTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAK 153
            L  L A L+ +      A L  ++  +   EA +  +E+        ++          +
Sbjct: 781  LNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKE--------YLE 832

Query: 154  EEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERK 213
            +E Q L  +       I  + KE++N     EEL  E++ L+ +L         L++ER 
Sbjct: 833  KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERD 892

Query: 214  QKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSL 273
            +   ++  L+ KI  L  ++ +K   + +L + L+  E EL  +     ++E        
Sbjct: 893  ELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELS 952

Query: 274  LVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACEN 333
            L +     Q++E   +  + + + +  E     KRL E       LKEK     +E    
Sbjct: 953  LEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDE-------LKEKRAKLEEERKAI 1005

Query: 334  RATIAKFTQEK 344
               I ++ ++K
Sbjct: 1006 LERIEEYEKKK 1016

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated

 Score = 44.9 bits (107), Expect = 1e-04
 Identities = 61/288 (21%), Positives = 108/288 (37%), Gaps = 53/288 (18%)

Query: 282 QKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFT 341
            +L  V  E  +LK    NE      RLR+ +  L +L E L+              K  
Sbjct: 26  HELGVVHIE--DLKEELSNE------RLRKLRSLLTKLSEALD--------------KLR 63

Query: 342 QEKDDLRKMLDNELGNVKNLKYE--LQITQETLETTRNEASDLEKQLKQSKDSCADLETE 399
                    L  E   V     E  ++  +E LE    E  +LE+++ +       LE E
Sbjct: 64  SYLP-KLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISE-------LENE 115

Query: 400 ISRIRAEFAEVKHTLGNSLDEAK-RSGEVLAGELFAA-KEVLKKASEELQNVSHELEATA 457
           I  +  E   ++      LD +     + ++  +    ++ L++   E    + E  +T 
Sbjct: 116 IKELEQEIERLEPWGNFDLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTD 175

Query: 458 ENRD--------SLRKELVNIYKKAEATANDLKEQK---EIVSSLNKELQALEKQTSKDK 506
           +            L  E+    KK      +L+E+    E++  + +EL+ +EK+     
Sbjct: 176 KGYVYVVVVVLKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKE----- 230

Query: 507 EARKSLETDLEEATKSLDEMNRNALE-LSKNLEKANSQISNLEDEKAV 553
             R+SL  +L+E  K   E      E L   LE+A +    L+ +K  
Sbjct: 231 --RESLLEELKELAKKYLEELLALYEYLEIELERAEALSKFLKTDKTF 276

Length = 646

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 104/582 (17%), Positives = 216/582 (37%), Gaps = 84/582 (14%)

Query: 102 TQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMN 161
              E  A +A L   ++ L+  E    + E     +LQ + +Q    L S + E + +  
Sbjct: 311 LNQELSAANAKLAADRSELELLEDQKGAFEDADIEQLQADLDQ----LPSIRSELEEVEA 366

Query: 162 KLNSANTTISGLGKELQNEKRFI-EELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIE 220
           +L++       + ++ +  K+ I E+L  +++     L    E+K   +   ++ L  +E
Sbjct: 367 RLDALTGKHQDVQRKYERLKQKIKEQLERDLEKNNERLAAIREEKDRQKAAIEEDLQALE 426

Query: 221 GLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDS 280
               +   L     E ++   +L   L + +  L +  +  ++ E        L +  + 
Sbjct: 427 SQLRQ--QLEAGKLEFNEEEYELELRLGRLKQRLDSATATPEELEQLEINDEALEKAQEE 484

Query: 281 KQKLEA--VQKEYKELKLSSENETASNA-----KRLREKKEELHQLKEKL--------EL 325
           +++ EA   Q + +  +L    + A  A     +RL + ++ L +L+ +L          
Sbjct: 485 QEQAEANVEQLQSELRQLRKRRDEALEALQRAERRLLQLRQALDELELQLSPQAGSLLHF 544

Query: 326 TLDEACENRATIAKFTQEKDDLRKMLDNELG-------------------------NVKN 360
             +EA     +I K    +   R  LD +L                          N   
Sbjct: 545 LRNEAPGWEESIGKVISPELLERTDLDPQLVEGSDSDTLYGVSLDLQRLDVPDYAANETE 604

Query: 361 LKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDE 420
           L+  LQ  +E L++   +    E+QL Q+     + +   +  R    + +  L   L  
Sbjct: 605 LRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQR-LQN 663

Query: 421 AKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATAND 480
            ++S      EL A  E  ++A  +L+ +  +L+   E + +  + L + ++  E     
Sbjct: 664 EQQS-LKDKLEL-AIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDDFR--ELRTER 719

Query: 481 LKEQKEIVSSLNKELQALEKQTSKDKEARKS----LETDLEEATKSLDEMNRNALELSKN 536
           L + + +   L+ +L  L       +   K+    L+   +    SLD       EL + 
Sbjct: 720 LAKWQVVEGELDNQLAQLSAAIEAARTQAKARLKELKKQYDRELASLDVDPNTVKELKRQ 779

Query: 537 LEKANSQISNLED-------------EKAVLYKSLTEQKSIANESRENME---------- 573
           +E+  + I  +               E  +   SL E++         +E          
Sbjct: 780 IEELETTIERIAVRRPEVREYRAFMQETWLHRDSLREERPNLAIQLRELESSAEELQQEL 839

Query: 574 -----DAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRL 610
                D      +L QERK+L+K+  +L+E L   + E+ +L
Sbjct: 840 TRLIKDTKLRRKKLEQERKALEKQLDQLDELLRGLRDEMRQL 881

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 51/269 (18%), Positives = 98/269 (36%), Gaps = 21/269 (7%)

Query: 365 LQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRS 424
                + L+  + E + LEK++++ +D  A LE ++  +  E A ++  L  + D+ K+ 
Sbjct: 33  AAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKL 92

Query: 425 GEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATAND---- 480
            + +A +L A    L+    E +    E  A    R         +    +A  +     
Sbjct: 93  RKQIA-DLNARLNALEVQEREQRRRLAEQLAAL-QRSGRNPPPALLVSPEDAQRSVRLAI 150

Query: 481 -----LKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSK 535
                   + E + +L   L+ L    ++    +  L T L E      ++ +   E  K
Sbjct: 151 YYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKK 210

Query: 536 NLEKANSQISNLEDEKAVLYK----------SLTEQKSIANESRENMEDAHNLVMRLGQE 585
            L + NS++S  + +   L            S     + A E+    E A         +
Sbjct: 211 TLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAARARAAEAK 270

Query: 586 RKSLDKRSKKLEEELASAKGEILRLRSQI 614
           R     +    E+ L S+ G    LR Q+
Sbjct: 271 RTGETYKPTAPEKMLISSTGGFGALRGQL 299

Length = 420

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 44.7 bits (105), Expect = 2e-04
 Identities = 103/576 (17%), Positives = 228/576 (39%), Gaps = 31/576 (5%)

Query: 103  QNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNK 162
            ++ ++A  A  E     +++ E A ++     ++ ++ E+ ++  +LK A+E+++    K
Sbjct: 1237 KDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAK 1296

Query: 163  LNSANTTISGLGKELQNE------KRFIEELRIEIDSLQTSL---LKFGEDKRTLEEERK 213
                        K+ +        K+  EE + + D+ +       K  E  +   E   
Sbjct: 1297 KAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAA 1356

Query: 214  QKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSL 273
             + +  E   +       E ++K D  +K +   ++ +   K      K+ +   +A++ 
Sbjct: 1357 DEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAA 1416

Query: 274  LVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACEN 333
              + D++K+K E  +K  +  K + E + A  AK+  E+ ++  + K+K E    +  + 
Sbjct: 1417 KKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEA--KKADE 1474

Query: 334  RATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSC 393
                A+  ++ D+ +K  +         K   +  ++  E  + E +    + K+++++ 
Sbjct: 1475 AKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAK 1534

Query: 394  ADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHEL 453
               E + +  + +  E+K        E K+  E            L+KA E  +     +
Sbjct: 1535 KADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARI 1594

Query: 454  EATAENRDSLRKELVNIYKKAE---ATANDLKEQKEIVSSLNKELQALEKQTSKDKEARK 510
            E   +  +  +K      KKAE     A +LK+ +E    + +  +   ++  K +E +K
Sbjct: 1595 EEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKK 1654

Query: 511  SLETDL---EEATKSLDEMNRNALELSKNLE---KANSQISNLEDEK---AVLYKSLTEQ 561
            + E +     E  K  +E  + A E  K  E   KA   +    +E      L K   E+
Sbjct: 1655 AEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEE 1714

Query: 562  KSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEE------LASAKGEILRLRSQIN 615
            K  A E ++  E+         +E +   K++++ +++      +A  K E  +   +I 
Sbjct: 1715 KKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIR 1774

Query: 616  SSKTLVNDENPRKVEDDNKVPVTAKKTTRRRKSNSQ 651
              K  V +E     E+D K  +   K  +    N  
Sbjct: 1775 KEKEAVIEEELD--EEDEKRRMEVDKKIKDIFDNFA 1808

Length = 2084

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 39/176 (22%), Positives = 83/176 (47%), Gaps = 1/176 (0%)

Query: 445 ELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQAL-EKQTS 503
           E + +  + EA      SL +EL  + ++       L+E ++++  LNK+++ L E++  
Sbjct: 231 EKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQL 290

Query: 504 KDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKS 563
           + KE    LE ++    +S+ E  R   +  + L K  ++I  L  E   L + + E++ 
Sbjct: 291 RVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERK 350

Query: 564 IANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSKT 619
             ++  E   +    +  L  E + +DK   +  +EL   + ++ +L+ +IN  K 
Sbjct: 351 RRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKR 406

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 64/289 (22%), Positives = 128/289 (44%), Gaps = 15/289 (5%)

Query: 138 LQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTS 197
           LQN+ E   ++     ++   L   ++   + I  L   L++     EEL  +    Q+S
Sbjct: 141 LQNQLEGCQRERNDLMKKFLALEGDVSDMRSRIEQLETALRHSTEKTEELEEQHKEAQSS 200

Query: 198 LLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKD---DGVQKLSSSLQQKETEL 254
                 ++  L  +R +   RI  L+  I  L+ + +E D   +G Q + + L++ + EL
Sbjct: 201 SESMSAERNALLAQRAENQQRILELEQDIQTLTQKKQENDRVLEGTQDIEAELERMKGEL 260

Query: 255 KNL--NSVYKQNELNARASSLLVERDDSKQKLEAVQK--EYKELKLSSENETASNAKRLR 310
           K        ++ +       L +E +   + L  +Q+  E  + K     E  ++   LR
Sbjct: 261 KQRLKKMTIQRRDEETERIDLQLENEQLHEDLRTLQERLESSQQKAGLLGEELASLGSLR 320

Query: 311 EKK-EELHQLK-EKLELTLDEACEN---RATIAKFTQEKDDLRKMLDNELGNVKNLKYEL 365
           +    ELHQ + E  +++L  +  N   +   +++ QE++ LR+  + +   ++ L  EL
Sbjct: 321 DHTIAELHQSRLESAQMSLQLSQLNLALKEGQSQWAQERETLRQSAEADKDRIQKLSAEL 380

Query: 366 QITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTL 414
              +E L+  R++   LE +L   KD       ++S  R E +E++  L
Sbjct: 381 LKLEEWLQEERSQREKLEVELGIEKDCN---RVQLSENRRELSELRSAL 426

Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region. Length = 546

>gnl|CDD|205692 pfam13514, AAA_27, AAA domain

 Score = 43.6 bits (103), Expect = 3e-04
 Identities = 54/365 (14%), Positives = 118/365 (32%), Gaps = 23/365 (6%)

Query: 265 ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNA--------KRLREKKEEL 316
               R   L  E +  +  L A+++ ++    ++                   RE+    
Sbjct: 565 AARRRLEQLEKELEVLELALAALREAWQAQWAAAGLPLTPAEMEDWLAERATAREQVRAY 624

Query: 317 HQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTR 376
            + + +L+  LD     RA +    +               +  L    +   E  E   
Sbjct: 625 FKARAELDALLDRRARLRAALRAALKAVAI-----VLPGEELAELLELARQLLEEAEKQA 679

Query: 377 NEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAK 436
              + L+++L+ ++ +  + E      ++     +    ++L EA   G         A 
Sbjct: 680 ARKASLDERLRDAERALEEAEERHDEAQSALEAWQEQWYDALLEAGLGGRASPAGALDAL 739

Query: 437 EVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATAN--DLKEQKEIVSSLNKE 494
           E+L+   E+LQ      +   +   ++ ++L    ++ EA A     +          + 
Sbjct: 740 ELLQNIKEKLQ----AADDLRQRIAAMERDLARFEEEVEALAEAVAPEMLGTPADETARA 795

Query: 495 LQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQIS--NLEDEKA 552
           L+   K+      A + L  ++EEA K + E      E    L           +E+  A
Sbjct: 796 LKQRLKRARDTAAAAEKLAEEIEEAEKEVSEAAAALDEAEARLTALLRAARCTTIEELLA 855

Query: 553 VLYKSLT--EQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRL 610
            + +S T  E +         +  A   +       ++      +L   L     +I  L
Sbjct: 856 AVERSDTYRELRKRIAALERTLVRAGGGLSLEALVAEAAALDPDELPARLEELARDIEEL 915

Query: 611 RSQIN 615
             ++N
Sbjct: 916 EEELN 920

This domain is found in a number of double-strand DNA break proteins. This domain contains a P-loop motif. Length = 1118

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 43.2 bits (101), Expect = 5e-04
 Identities = 102/550 (18%), Positives = 223/550 (40%), Gaps = 28/550 (5%)

Query: 102  TQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMN 161
             + +KKA +A  +  +A+  ++        K      + + E+  K  ++AK E +   +
Sbjct: 1298 AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAAD 1357

Query: 162  KLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEG 221
            +  +A        K+ +  K+  +  + + +  +    K  E K+  EE++K+  +  + 
Sbjct: 1358 EAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK----KADEAKKKAEEDKKKADELKKA 1413

Query: 222  LQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSK 281
               K    + E ++K +  +K +   ++K  E K  +   K+ E   +A     + +++K
Sbjct: 1414 AAAKKK--ADEAKKKAEEKKK-ADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK 1470

Query: 282  QKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFT 341
            +  EA +K  +  K     + A  AK+  ++ ++  + K+K +         +A  AK  
Sbjct: 1471 KADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKA 1530

Query: 342  QEK---DDLRKMLDNELGNVKNLKYELQITQET--LETTRNEASDLEKQLKQSKDSCADL 396
            +E    D+ +K  + +  +      EL+  +E    E  +    D    L++++++    
Sbjct: 1531 EEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAE 1590

Query: 397  ETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEAT 456
            E  I  +   + E K        +A+ + ++ A EL  A+E  KK  +  +  + E +  
Sbjct: 1591 EARIEEVMKLYEEEKKMKAEEAKKAEEA-KIKAEELKKAEEEKKKVEQLKKKEAEEKKKA 1649

Query: 457  AENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDL 516
             E + +  +  +   ++A+    D K+ +E   +   E +A E    + +EA+K+     
Sbjct: 1650 EELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKA----- 1704

Query: 517  EEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAH 576
            EE  K   E  + A EL K  E+   +    + E         E K  A E++++ E+  
Sbjct: 1705 EELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEA-------EEDKKKAEEAKKDEEEKK 1757

Query: 577  NLVMRLGQERKSLDKRSKKLE---EELASAKGEILRLRSQINSSKTLVNDENPRKVEDDN 633
             +     +E K  ++  K+ E   EE    + E  R+           N  N  +   + 
Sbjct: 1758 KIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEG 1817

Query: 634  KVPVTAKKTT 643
             + +   K  
Sbjct: 1818 NLVINDSKEM 1827

Length = 2084

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.7 bits (101), Expect = 7e-04
 Identities = 35/196 (17%), Positives = 76/196 (38%), Gaps = 17/196 (8%)

Query: 453 LEATAEN-------RDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKD 505
           LE T EN        + L ++L ++ ++AE  A   KE K  +  L   L  L       
Sbjct: 181 LERTRENLDRLEDILNELERQLKSLERQAEK-AERYKELKAELRELELALLVLRL----- 234

Query: 506 KEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIA 565
               + L  +LEE  + L E      EL+  L++   ++  L  E + L + + E +   
Sbjct: 235 ----EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL 290

Query: 566 NESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSKTLVNDEN 625
                 +         L +   +L+++ ++LE +L   + ++  L  ++   +  + +  
Sbjct: 291 YALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350

Query: 626 PRKVEDDNKVPVTAKK 641
                 + ++     +
Sbjct: 351 EELESLEAELEELEAE 366

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 48/238 (20%), Positives = 111/238 (46%), Gaps = 38/238 (15%)

Query: 103 QNEKKATDATLEYMKARLKEKEAAIVSLE----------KDFESKLQNEQEQRTK-QLKS 151
           + E +  +   E +K RL+E E  + SLE          K+ E++++  +E   K +   
Sbjct: 722 EKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEAL 781

Query: 152 AKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEE 211
              E +L  +++      +S L +E+   +  + E+  +++ L        ++ + L+E+
Sbjct: 782 NDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQ 841

Query: 212 RKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARAS 271
           R    ++I+ ++ +I  L+ +  E ++ +++L ++L+  E+ L +L              
Sbjct: 842 RIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKK------------ 889

Query: 272 SLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDE 329
               ERD+ + +L  ++++ +EL+   E           +K++ L +LK KLE   +E
Sbjct: 890 ----ERDELEAQLRELERKIEELEAQIE-----------KKRKRLSELKAKLEALEEE 932

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 53/223 (23%), Positives = 98/223 (43%), Gaps = 13/223 (5%)

Query: 434 AAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEI-VSSLN 492
            A E L++  E ++ +   ++   +  + LR+E     +KAE     LKE++E     L 
Sbjct: 174 KALEELEEVEENIERLDLIIDEKRQQLERLRRE----REKAERYQALLKEKREYEGYELL 229

Query: 493 KELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKA 552
           KE +ALE+Q    +    SLE +LE+ T+ + E+ +   E+ + LE+ N +I +L +E+ 
Sbjct: 230 KEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQ 289

Query: 553 VLYKSLTEQ--------KSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAK 604
           +  K    +        +    E    +EDA   + +L  E   L    ++LE E+   +
Sbjct: 290 LRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEER 349

Query: 605 GEILRLRSQINSSKTLVNDENPRKVEDDNKVPVTAKKTTRRRK 647
               +L  +    K  + D      E D +   T  +    R+
Sbjct: 350 KRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE 392

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 40/147 (27%), Positives = 71/147 (48%)

Query: 484 QKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQ 543
           QK  +  L +EL  LE Q  K +E  KSL+ +L      L+E+ R   EL + LE+   +
Sbjct: 665 QKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRE 724

Query: 544 ISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASA 603
           ++ LE+E   L   L E +    E  E +E+    +  L +E +SL++   KL+EE+   
Sbjct: 725 LAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEEL 784

Query: 604 KGEILRLRSQINSSKTLVNDENPRKVE 630
           + +   L+ ++   +  + +   R   
Sbjct: 785 EEKRQALQEELEELEEELEEAERRLDA 811

Length = 1163

>gnl|CDD|114219 pfam05483, SCP-1, Synaptonemal complex protein 1 (SCP-1)

 Score = 41.2 bits (96), Expect = 0.002
 Identities = 77/372 (20%), Positives = 163/372 (43%), Gaps = 22/372 (5%)

Query: 138 LQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTS 197
           L  E E     L+ +   Q+ L   L  A  TI  L +E + +   +EEL     +    
Sbjct: 294 LTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQ---MEELNKAKAAHSFV 350

Query: 198 LLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNL 257
           + +F     +LEE  + +  R+E  +D++ ++++EL++K   +++++     KE EL+ L
Sbjct: 351 VTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEEL 410

Query: 258 NSV--------YKQNELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRL 309
             +         ++ +    A  L  +  +    L+A +KE  +L++       S    L
Sbjct: 411 KKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYL 470

Query: 310 REKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQ 369
           +E ++    LK +LE    +  E  A   K   E  +L +          ++  EL+  Q
Sbjct: 471 KEVED----LKTELEKEKLKNIELTAHCDKLLLENKELTQ-------EASDMTLELKKHQ 519

Query: 370 ETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLA 429
           E +   + +   + KQ++  ++   +L  E+  +R EF +    +   LD+++ +   + 
Sbjct: 520 EDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIE 579

Query: 430 GELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVS 489
            E+   ++ +K    +  N+  ++E   +N + L +E   + KK  A    L   +  V+
Sbjct: 580 YEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVN 639

Query: 490 SLNKELQALEKQ 501
            L  EL + +++
Sbjct: 640 KLELELASAKQK 651

Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase. Length = 787

>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC

 Score = 41.1 bits (96), Expect = 0.002
 Identities = 72/516 (13%), Positives = 155/516 (30%), Gaps = 35/516 (6%)

Query: 113 LEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTK--QLKSAKEEQQLLMNKLNSANTTI 170
              M     E++  +    K     LQ  Q+      Q + A+EEQ      L      I
Sbjct: 210 TPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARI 269

Query: 171 SGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLS 230
               +EL+ ++  +EE +  I+             + + +  +Q       LQ K+   +
Sbjct: 270 ----EELRAQEAVLEETQERIN-RARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRA 324

Query: 231 LELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKE 290
            +L  K     K  SS++++   L+ L+S           ++ + E    +  L      
Sbjct: 325 -KLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHT 383

Query: 291 YKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKM 350
            ++ K +   +  S  K L   + E   +      T               Q++   R  
Sbjct: 384 LQQQKTTLTQKLQSLCKELDILQREQATI---DTRTSAFRDLQGQLAHAKKQQELQQRYA 440

Query: 351 LDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEV 410
                        + +  ++       ++    +Q  Q+K+     ET    +       
Sbjct: 441 ELCAAAITC--TAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLE 498

Query: 411 KHTLGNSLDEAKRSGEVLAGELF----------AAKEVLKKASEELQNVSHELEATAENR 460
                  L  +         ++             ++   +     ++V H+L +  + R
Sbjct: 499 LQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQR 558

Query: 461 DSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSL-------- 512
            SL++++  I +            KE + +L      L+  T K  EA   L        
Sbjct: 559 ASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALL 618

Query: 513 ---ETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESR 569
              + + +     L     +     K       Q++  ++       S+         SR
Sbjct: 619 RKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASR 678

Query: 570 ENMED-AHNLVMRLGQERKSLDKRSKKLEEELASAK 604
           +       +   +L   ++ L +    L E     +
Sbjct: 679 QLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIE 714

All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042

>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 56/266 (21%), Positives = 115/266 (43%), Gaps = 37/266 (13%)

Query: 160 MNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRI 219
           M+KLN          +EL  +   I+ L ++ID +Q    +     + +EE+RK+  + I
Sbjct: 168 MDKLNKDKI------RELNQQ---IQTLDMKIDHIQQ---QIKTYNKNIEEQRKKNGENI 215

Query: 220 EGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDD 279
              Q+K +    EL E+    + + + +++   EL NL       + +A  + L      
Sbjct: 216 ARKQNKYD----ELVEE---AKTIKAEIEELTDELLNLVM--DIEDPSAALNKLNTAAAK 266

Query: 280 SKQKLEAVQKEYKELKLSSENETASNA-----KRLREKKEELHQLKEKLELTLDEACENR 334
            K K+E  QK  K  +      T +        R+ + K++L +L+  LE  LD A +  
Sbjct: 267 IKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEK-LDTAIDEL 325

Query: 335 ATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCA 394
             I     E ++  K        +  LK ++   +++L T  ++A  ++  +++ +    
Sbjct: 326 EEIM---DEFNEQSK-------KLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFV 375

Query: 395 DLETEISRIRAEFAEVKHTLGNSLDE 420
           D   E+++++ E  ++  T    + E
Sbjct: 376 DNAEELAKLQDELDKIVKTKSELVKE 401

Length = 562

>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 63/304 (20%), Positives = 118/304 (38%), Gaps = 21/304 (6%)

Query: 346 DLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRA 405
           DL   L  +L NV       +   E   +  +E   LE +LK+  +   DL  EI+ +R 
Sbjct: 182 DLIDRLAGDLTNVLRR----RKKSELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRN 237

Query: 406 EFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLR- 464
           E  E + +L +   + +  G  L  E    +  LK+     +    +L   A +   L  
Sbjct: 238 ELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELAADPLPLLL 297

Query: 465 -KELVNIYKKA-----EATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEE 518
              L++  K       ++  N L  Q+E+     + L++L K  +   E  K +  +L E
Sbjct: 298 IPNLLDSTKAQLQKEEQSQQNQLT-QEELEERDKELLESLPKL-ALPAEHVKEIAAELAE 355

Query: 519 ATKSLDEMNRNALELS----KNLEKANSQISN-LEDEKAVLYKSLTEQKSIANESRENME 573
             K     +     LS      LE    Q+   L+D K+ L K L E +    E  + + 
Sbjct: 356 IDKPATTDSEIPHRLSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKIS 415

Query: 574 --DAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSKTLVNDENPRKVED 631
              +   + +L +E         + E E+     ++  L+  I + +  + DE  ++  +
Sbjct: 416 TIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL-DEKTKQKIN 474

Query: 632 DNKV 635
             ++
Sbjct: 475 AFEL 478

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria [DNA metabolism, Restriction/modification]. Length = 650

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 40/222 (18%), Positives = 88/222 (39%), Gaps = 22/222 (9%)

Query: 307 KRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQ 366
            +LR  + EL   + +      E    R+ + K  QE++ +R+ L          +  L 
Sbjct: 81  PQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELA-------AARQNLA 133

Query: 367 ITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGE 426
             Q+ L     +A DL+ +LK   +    LE +   ++A   +++ +             
Sbjct: 134 KAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQAS------------- 180

Query: 427 VLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKE 486
             A +L +    LK  S +++  +  L   A    +  +EL      A+ TA  ++++  
Sbjct: 181 --ATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDA 238

Query: 487 IVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNR 528
            +S   +++ A  +Q  + +   + LET      + + ++  
Sbjct: 239 QISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEA 280

Length = 499

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 35/185 (18%), Positives = 78/185 (42%), Gaps = 10/185 (5%)

Query: 439 LKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQAL 498
           LK    E+ ++  +L  TA++   LRK++ ++  +  A     +EQ+  ++   ++L AL
Sbjct: 68  LKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLA---EQLAAL 124

Query: 499 EKQTSKDKEARKSLETDLEEATKS---LDEMNRNALELSKNLEKANSQISNL----EDEK 551
           ++       A      D + + +       +N    E    L+    Q++ +      E+
Sbjct: 125 QRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQ 184

Query: 552 AVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLR 611
           A L   L+EQ++   +  + +E+    + +L  E  +  K+ ++L    +  K EI    
Sbjct: 185 AELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244

Query: 612 SQINS 616
           +    
Sbjct: 245 AAAAK 249

Length = 420

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.5 bits (94), Expect = 0.003
 Identities = 103/491 (20%), Positives = 187/491 (38%), Gaps = 31/491 (6%)

Query: 175  KELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERK-QKLDRIEGLQDKINLLSLEL 233
                 E +  E  + E         K  ED R  EE RK +   + E  +   +   +E+
Sbjct: 1097 FGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEI 1156

Query: 234  REKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKE 293
              K +  +K   +  +K  + K   +  K  E+  R +  L + +D+++   A  ++ +E
Sbjct: 1157 ARKAEDARKAEEA--RKAEDAKKAEAARKAEEV--RKAEELRKAEDARKAEAA--RKAEE 1210

Query: 294  LKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDN 353
             + + E   A +AK+    K+     K+  E    E   N   I KF + +         
Sbjct: 1211 ERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQA 1270

Query: 354  ELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHT 413
             +   +  K +     E     + +A + +K  ++ K   A  + E ++   E  +    
Sbjct: 1271 AIKAEEARKADELKKAE----EKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEE 1326

Query: 414  LGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKK 473
                 D AK+  E       AAK   + A++E +    + EA  + ++  +K+     KK
Sbjct: 1327 AKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK 1386

Query: 474  AEAT--ANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLET--DLEEATKSLDEMNRN 529
            AE    A++ K++ E       EL+       K  EA+K  E     +EA K  +E  + 
Sbjct: 1387 AEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEE-AKK 1445

Query: 530  ALELSKNLEKA----NSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLV--MRLG 583
            A E  K  E+A     ++    E +KA   K   E+   A+E+++  E+A       +  
Sbjct: 1446 ADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKA 1505

Query: 584  QERKSLDKRSKKLEE-----ELASA----KGEILRLRSQINSSKTLVNDENPRKVEDDNK 634
             E K     +KK EE     E   A    K +  +   +   +  L   E  +K E+  K
Sbjct: 1506 AEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKK 1565

Query: 635  VPVTAKKTTRR 645
                 K    +
Sbjct: 1566 AEEAKKAEEDK 1576

Length = 2084

>gnl|CDD|224428 COG1511, COG1511, Predicted membrane protein [Function unknown]

 Score = 40.2 bits (94), Expect = 0.004
 Identities = 48/352 (13%), Positives = 98/352 (27%), Gaps = 26/352 (7%)

Query: 242 KLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKELKLSSEN- 300
            +   + +K   +    +    ++L    S  L E          +      +K +++  
Sbjct: 128 TIDYKVNEKLNAVAPKITEKAADKLLNEISKELTETYTKVVAFPTIYDLGGGVKGAADGA 187

Query: 301 -ETASNAKRLREKKEELHQLKEKLELTLDEACENRATIA-KFTQEKDDLRKMLDNELGNV 358
            +            ++L  L   L  +     +    +    T   D L + LD+ LG +
Sbjct: 188 EKLKDGTDEASNGNKKLSDLLNTLNNSSATFSDGLNALTSGLTTLTDGLNQ-LDSGLGTL 246

Query: 359 KNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSL 418
                EL+   E L     E S    +L        DL   + ++    + +   L    
Sbjct: 247 AAGIGELKQGAEQLNEGIGEFSSGLSELNSGVQ---DLAAGVPQLNQGISALAAGLSLPD 303

Query: 419 DEAKRSGEVLAGELF---AAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAE 475
               +   +           K+    + E  Q     L++      SL          A 
Sbjct: 304 SLGDQFSSLQEALTQIAQGLKQKTSSSLEAAQGSLSSLQSMLALSKSLDLTAEGATVDAL 363

Query: 476 ATAN----------DLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDE 525
              +           L    E++S+    +        +           L+ A   +  
Sbjct: 364 GAPDGVQWLDESQKTLATLSELLSTGIDGVSEGLDALEQASAQLAKSLAKLKTAVAQIAA 423

Query: 526 MNRNALELSKNL-----EKANSQISN-LEDEKAVLYKSLTEQKSIANESREN 571
                L  +  +      K   ++ N L    A    +L +  S AN+S  +
Sbjct: 424 SIAQLLPGASEVLKTLKSKGLDKLLNQLNGALAKGSNALVQGLSDANDSFRS 475

Length = 780

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	651
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.47
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	99.46
PRK02224	880	chromosome segregation protein; Provisional	99.44
PRK02224	880	chromosome segregation protein; Provisional	99.41
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.38
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.33
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.31
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.26
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	99.24
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.22
PRK03918	880	chromosome segregation protein; Provisional	99.18
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.15
PRK03918	880	chromosome segregation protein; Provisional	99.11
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.9
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.88
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.85
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.83
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.78
PRK01156	895	chromosome segregation protein; Provisional	98.78
PRK01156	895	chromosome segregation protein; Provisional	98.77
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	98.72
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.42
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.41
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.34
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.29
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	98.19
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.18
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	98.17
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	98.13
PRK04778	569	septation ring formation regulator EzrA; Provision	98.11
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	98.0
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.98
KOG0933	1174	consensus Structural maintenance of chromosome pro	97.9
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.84
PRK04778	569	septation ring formation regulator EzrA; Provision	97.77
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.76
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	97.66
PRK11637	428	AmiB activator; Provisional	97.63
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	97.62
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.61
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.6
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.54
PHA02562	562	46 endonuclease subunit; Provisional	97.5
PRK11637	428	AmiB activator; Provisional	97.45
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	97.44
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	97.44
PHA02562	562	46 endonuclease subunit; Provisional	97.37
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	97.34
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.32
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.16
PRK04863	1486	mukB cell division protein MukB; Provisional	97.09
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	97.06
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.01
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	96.97
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	96.94
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	96.94
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.92
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	96.92
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	96.79
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	96.75
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.55
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	96.27
PRK09039	343	hypothetical protein; Validated	96.25
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.12
KOG0964	1200	consensus Structural maintenance of chromosome pro	96.09
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.05
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	95.81
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	95.71
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	95.62
KOG0963	629	consensus Transcription factor/CCAAT displacement	95.61
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	95.6
KOG0018	1141	consensus Structural maintenance of chromosome pro	95.56
PRK09039	343	hypothetical protein; Validated	95.5
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	95.44
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	95.21
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	95.18
PRK04863	1486	mukB cell division protein MukB; Provisional	95.03
KOG0996	1293	consensus Structural maintenance of chromosome pro	94.92
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	94.8
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	94.65
KOG0996	1293	consensus Structural maintenance of chromosome pro	94.63
COG5185	622	HEC1 Protein involved in chromosome segregation, i	94.62
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	94.51
KOG0963	629	consensus Transcription factor/CCAAT displacement	94.48
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	94.36
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	94.32
PF13514	1111	AAA_27: AAA domain	94.3
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	94.18
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	94.01
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	93.88
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	93.81
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	93.14
KOG4673	961	consensus Transcription factor TMF, TATA element m	92.87
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	92.59
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	92.46
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	92.34
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	92.28
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	92.21
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	92.11
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	91.67
KOG1103	561	consensus Predicted coiled-coil protein [Function	91.63
KOG4673	961	consensus Transcription factor TMF, TATA element m	91.44
PF14988	206	DUF4515: Domain of unknown function (DUF4515)	91.26
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	91.26
KOG0971	1243	consensus Microtubule-associated protein dynactin	91.15
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	91.04
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	90.87
COG4942	420	Membrane-bound metallopeptidase [Cell division and	90.33
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	90.29
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	90.14
PRK10929	1109	putative mechanosensitive channel protein; Provisi	90.05
KOG1003	205	consensus Actin filament-coating protein tropomyos	89.95
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	89.56
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	89.31
PRK10246	1047	exonuclease subunit SbcC; Provisional	89.2
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	88.96
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	88.82
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	88.71
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	88.62
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	88.13
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	88.02
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	87.9
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	87.79
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	87.7
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	86.96
PF10186	302	Atg14: UV radiation resistance protein and autopha	86.86
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	86.07
PF10368	204	YkyA: Putative cell-wall binding lipoprotein; Inte	85.9
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	84.97
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	84.22
KOG0964	1200	consensus Structural maintenance of chromosome pro	84.06
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	84.01
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	83.93
COG5185	622	HEC1 Protein involved in chromosome segregation, i	83.52
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	83.32
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	82.96
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	82.95
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	82.55
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	82.2
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	81.9
PRK10884	206	SH3 domain-containing protein; Provisional	81.85
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	81.26
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	80.87
PF10186	302	Atg14: UV radiation resistance protein and autopha	80.87
PRK10884	206	SH3 domain-containing protein; Provisional	80.83
COG4477	570	EzrA Negative regulator of septation ring formatio	80.7
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	80.53

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.47  E-value=2.3e-07  Score=104.91  Aligned_cols=126  Identities=21%  Similarity=0.286  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHHHhHHHhhhhhccccchhHHHHHHHhHHHHHhhhHHHh
Q 036820          490 SLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESR  569 (651)
Q Consensus       490 tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~~Le~ans~issle~eKevL~ksl~eqk~~t~EAq  569 (651)
                      .+..++..+..++..-....+.++..+++....+.++....-.+...++.....+..+.++...+...+..-...-.+++
T Consensus       814 ~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~  893 (1179)
T TIGR02168       814 LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLR  893 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444333334444455555555555555554455555555566666666666666666666555555666


Q ss_pred             hchHHHHHHHHHhhhhhhhhhHhhhhhHHHHhhcccchhhhhhccc
Q 036820          570 ENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQIN  615 (651)
Q Consensus       570 eN~eDA~nli~~Lg~ERE~~e~r~kkLEeELAsAKGEiLrLR~qi~  615 (651)
                      ..+.++..-+..+..+...+......++.+++.+..++=.++.++.
T Consensus       894 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~  939 (1179)
T TIGR02168       894 SELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRID  939 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666666666666666666666666555555444

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=99.46  E-value=6.8e-08  Score=118.19  Aligned_cols=256  Identities=21%  Similarity=0.315  Sum_probs=182.8

Q ss_pred             HHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 036820          337 IAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGN  416 (651)
Q Consensus       337 Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~  416 (651)
                      ...++..++++++-|+.|......|-+.+       ...+.++-.|-+++++...--..|..++++...+....+--+..
T Consensus      1296 ~~~~~~qle~~k~qle~e~r~k~~l~~~l-------~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~ 1368 (1930)
T KOG0161|consen 1296 KQALESQLEELKRQLEEETREKSALENAL-------RQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEE 1368 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666666666666666555554433       34455566677777777777777777777777777776665554


Q ss_pred             chHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH
Q 036820          417 SLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQ  496 (651)
Q Consensus       417 ~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~  496 (651)
                      .+..   ..+-+-.+--..-+-+...++.++.+..--++.-..+..|+-|+-|       ..-++-+=+.+++.|++.+.
T Consensus      1369 ~~~~---~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d-------~~~d~~~~~~~~~~le~k~k 1438 (1930)
T KOG0161|consen 1369 EVLQ---RLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELED-------LQLDLERSRAAVAALEKKQK 1438 (1930)
T ss_pred             HHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence            4332   1111111111222223333344444444444444455555555544       44556566778999999999


Q ss_pred             HHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHHHhHHHhhhhhccccchhHHHHHHHhHHHHHhhhHHHhhchHHHH
Q 036820          497 ALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAH  576 (651)
Q Consensus       497 al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~~Le~ans~issle~eKevL~ksl~eqk~~t~EAqeN~eDA~  576 (651)
                      ...+.+.-.+.-.-.|...+|.|...+-.-.+..+.|...|+.+.-.+..++.|..-|+.-+.+-+..-.++..|+..-+
T Consensus      1439 ~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~ele 1518 (1930)
T KOG0161|consen 1439 RFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELE 1518 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998888888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhhhhHhhhhhHHHHhhcccchhh
Q 036820          577 NLVMRLGQERKSLDKRSKKLEEELASAKGEILR  609 (651)
Q Consensus       577 nli~~Lg~ERE~~e~r~kkLEeELAsAKGEiLr  609 (651)
                      -...+++.|.+-+.....-+|.+|-.+..-++|
T Consensus      1519 k~~r~le~e~~elQ~aLeElE~~le~eE~~~lr 1551 (1930)
T KOG0161|consen 1519 KEKRRLEQEKEELQAALEELEAALEAEEDKKLR 1551 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence            999999999888888888888888777777766

>PRK02224 chromosome segregation protein; Provisional

Probab=99.44  E-value=3e-07  Score=104.05  Aligned_cols=117  Identities=20%  Similarity=0.285  Sum_probs=50.4

Q ss_pred             HHHHHHHHhhhhHHHHHhh-HHHHHHHHHHHHHHHHHHHHH---hHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHH
Q 036820          112 TLEYMKARLKEKEAAIVSL-EKDFESKLQNEQEQRTKQLKS---AKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEEL  187 (651)
Q Consensus       112 tiesm~~kL~e~Eaa~~~l-DedFEkRLKevQeeVkkLLKk---~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdl  187 (651)
                      .+..+..++.+-+..|... ..+....|...+.++..+-..   ....-..+-.++..++..+..+...+.    .++.+
T Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~l~el~~~i~~~~~~~~~l~~~l~~l~~~~~el~~~~~----~l~~l  256 (880)
T PRK02224        181 VLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERRE----ELETL  256 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence            4444444444444444442 244555555555555555522   233333444444444444433333322    22333


Q ss_pred             HHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhh
Q 036820          188 RIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLE  232 (651)
Q Consensus       188 k~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e  232 (651)
                      ...+..+...+...+..+..+..++.+.-+.+..++.++.-|..+
T Consensus       257 ~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~  301 (880)
T PRK02224        257 EAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAE  301 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444444333

>PRK02224 chromosome segregation protein; Provisional

Probab=99.41  E-value=5.5e-07  Score=101.97  Aligned_cols=170  Identities=19%  Similarity=0.233  Sum_probs=78.6

Q ss_pred             HHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 036820          115 YMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSL  194 (651)
Q Consensus       115 sm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql  194 (651)
                      .+..++.+...++..+...+...+..++..+...      ..+.+..+|..++..+..+...+.........+..++..+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~l~~~l~~~~~~l~el~~~i~~~~~~~~~l~~~l~~l  239 (880)
T PRK02224        166 EYRERASDARLGVERVLSDQRGSLDQLKAQIEEK------EEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEA  239 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555544555556666666665555544441      2345566666666666666666666666665555555555


Q ss_pred             HhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhh-----hhhhh
Q 036820          195 QTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQN-----ELNAR  269 (651)
Q Consensus       195 ~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt-----~Ln~~  269 (651)
                      ...+........    .+..=-+.+..++.+|.-+...+...+..|.++...+...+.++..|.......     .|+.+
T Consensus       240 ~~~~~el~~~~~----~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~  315 (880)
T PRK02224        240 DEVLEEHEERRE----ELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEAR  315 (880)
T ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence            444332222211    111111233334444444444444444444444444444444444443322221     33334


Q ss_pred             hhhhHhcccchHHHHHHHHHHHHHh
Q 036820          270 ASSLLVERDDSKQKLEAVQKEYKEL  294 (651)
Q Consensus       270 v~sL~~ek~~~~~k~~~l~key~~l  294 (651)
                      ...|-....+....++.+..+|..+
T Consensus       316 ~~~l~~k~~el~~~l~~~~~~l~~~  340 (880)
T PRK02224        316 REELEDRDEELRDRLEECRVAAQAH  340 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444443

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.38  E-value=1.3e-06  Score=98.83  Aligned_cols=74  Identities=26%  Similarity=0.365  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHHHhHHHhhhhhccccchhHHHHHHHhH
Q 036820          485 KEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSL  558 (651)
Q Consensus       485 kkiv~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~~Le~ans~issle~eKevL~ksl  558 (651)
                      ..-+..+..+++.+.+++..-.+....++.+++.+...+.++....-.|-.++......+..++.+..-+...+
T Consensus       823 ~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~  896 (1179)
T TIGR02168       823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSEL  896 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555544444444444444444444444443333333333333333333333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR00606 rad50 rad50

Probab=99.33  E-value=1.1e-06  Score=104.78  Aligned_cols=444  Identities=16%  Similarity=0.230  Sum_probs=245.4

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHH
Q 036820          174 GKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETE  253 (651)
Q Consensus       174 ~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e  253 (651)
                      .+.+.....-+.+++..+..+...+...+.....++.+|..+-..++...++|. -.-++.+-++.+..+...+.....+
T Consensus       576 ~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~-~~~~~~~~~~~L~~~~~~l~~~~~~  654 (1311)
T TIGR00606       576 EDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLF-DVCGSQDEESDLERLKEEIEKSSKQ  654 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHHHHHHHHH
Confidence            444555555666666666666666666666666666666666666666777666 1114444444555555555444433


Q ss_pred             hhhhH---hhhhhh------------------------------hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhch--
Q 036820          254 LKNLN---SVYKQN------------------------------ELNARASSLLVERDDSKQKLEAVQKEYKELKLSS--  298 (651)
Q Consensus       254 ~~nL~---~~y~qt------------------------------~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ss--  298 (651)
                      +..+.   -+|..-                              +|...+.++-.........++.+.+.|..|..-.  
T Consensus       655 ~~~~~~~~~~~~k~ie~a~~~~~~~C~LC~R~f~~eee~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~~~  734 (1311)
T TIGR00606       655 RAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPG  734 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCCChhHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            32222   333322                              3344444443345556666667777777766552  


Q ss_pred             -hhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHh------hhhhhhhHHHHHhhHH-
Q 036820          299 -ENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNE------LGNVKNLKYELQITQE-  370 (651)
Q Consensus       299 -E~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E------~~~~k~L~~~lq~Tqe-  370 (651)
                       +.--..-.+-+.+.+.++++++..+..+-++..+-...+..+..+++.+..|+...      ...+..++..|..... 
T Consensus       735 ~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~  814 (1311)
T TIGR00606       735 RQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAK  814 (1311)
T ss_pred             HHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             22111212234666777777777777777776666666666666666665443332      1111112211111111 


Q ss_pred             --------HHHhhhhhhhHHHHHHHHH-------HhhhhHHHHHHHHH-------HHHHHHHHHHHhcchHHHHhhhhhh
Q 036820          371 --------TLETTRNEASDLEKQLKQS-------KDSCADLETEISRI-------RAEFAEVKHTLGNSLDEAKRSGEVL  428 (651)
Q Consensus       371 --------~L~~sR~e~s~L~~~L~~~-------~~~~~~L~~qiskl-------~~E~~e~ke~l~~~l~eak~~~~~L  428 (651)
                              ++.....++..+..+++.+       .....++..+|..|       ..+-....+.++ .....+..-+.|
T Consensus       815 l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~-~r~~le~~L~el  893 (1311)
T TIGR00606       815 LQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQ-RRQQFEEQLVEL  893 (1311)
T ss_pred             hccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence                    1122233333333333333       33333444444444       222222233333 233334444455


Q ss_pred             hhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 036820          429 AGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEA  508 (651)
Q Consensus       429 s~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~Ea  508 (651)
                      ..++....+-++....++......+......++.+....=..+.++....+.+...-.-+..+|.+++....--  -++.
T Consensus       894 ~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~--~~~q  971 (1311)
T TIGR00606       894 STEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDG--KDDY  971 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHH
Confidence            66666666666666777777777777777777777777777777777777777777777777777776654322  1122


Q ss_pred             hHhHHHhHHHHhhhHHHhhhhHHHHhHHHhhhhhccccchhHHHHHHHhHHHH--HhhhHHHhhchH--HHHHH---HHH
Q 036820          509 RKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQ--KSIANESRENME--DAHNL---VMR  581 (651)
Q Consensus       509 Rk~Le~dLeeaT~SldEmn~~~~~LS~~Le~ans~issle~eKevL~ksl~eq--k~~t~EAqeN~e--DA~nl---i~~  581 (651)
                      =..++..|.....+++++..---.+..++......|..+..++.-+..-|.-=  ++.-.+-...+.  |.++.   +..
T Consensus       972 L~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~ 1051 (1311)
T TIGR00606       972 LKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQ 1051 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence            34566677777777777777777777777777777777777777776666544  333333333333  22222   234


Q ss_pred             hhhhhhhhhHhhhhhHHHHhhcccchhhhhhccccccCcc
Q 036820          582 LGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSKTLV  621 (651)
Q Consensus       582 Lg~ERE~~e~r~kkLEeELAsAKGEiLrLR~qi~ss~s~~  621 (651)
                      +..|+..+..+.-.|--.-|.+-|++-+|..||..-...-
T Consensus      1052 ~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606      1052 MKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555566667799999998888766554

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00606 rad50 rad50

Probab=99.31  E-value=1.9e-06  Score=102.90  Aligned_cols=181  Identities=18%  Similarity=0.246  Sum_probs=129.8

Q ss_pred             hhhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhh--hhhHhHHHH
Q 036820          239 GVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAK--RLREKKEEL  316 (651)
Q Consensus       239 ~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~--lL~eke~~l  316 (651)
                      .+..+-..+..-+..|..+..-+....++.++.....+..+.+.+++.|..+...+...++.+|-.|..  =+..|...|
T Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~  551 (1311)
T TIGR00606       472 RILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQI  551 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555556666666666668999999999999999999999999999999999999999975  457778888


Q ss_pred             HHHHHHHHHHHhHhhh--chhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhh
Q 036820          317 HQLKEKLELTLDEACE--NRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCA  394 (651)
Q Consensus       317 ~qLeekl~~Al~e~~k--~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~  394 (651)
                      +.+....+..+...-+  +..  ..|.+.++..+.-++.==..+..+..+++..+-.+...|.+...+..+|+.....+.
T Consensus       552 ~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~  629 (1311)
T TIGR00606       552 RKIKSRHSDELTSLLGYFPNK--KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLF  629 (1311)
T ss_pred             HHHHHHHHHHHHHhcCCCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8777776666665432  111  556777777777777666777778888888888888888888888888886665554


Q ss_pred             H------HHHHHHHHHHHHHHHH----------HHHhcchHHH
Q 036820          395 D------LETEISRIRAEFAEVK----------HTLGNSLDEA  421 (651)
Q Consensus       395 ~------L~~qiskl~~E~~e~k----------e~l~~~l~ea  421 (651)
                      +      .+.-+..+..++..+.          ..+..-|+.|
T Consensus       630 ~~~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~a  672 (1311)
T TIGR00606       630 DVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQL  672 (1311)
T ss_pred             cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2      3334555555555555          5555556655

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.26  E-value=1.3e-05  Score=91.65  Aligned_cols=32  Identities=22%  Similarity=0.266  Sum_probs=15.9

Q ss_pred             hhhhhhhhhHhcccchHHHHHHHHHHHHHhhh
Q 036820          265 ELNARASSLLVERDDSKQKLEAVQKEYKELKL  296 (651)
Q Consensus       265 ~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~  296 (651)
                      .++.++..+..+..+...++..+..+|..++.
T Consensus       466 ~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~  497 (1164)
T TIGR02169       466 KYEQELYDLKEEYDRVEKELSKLQRELAEAEA  497 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444445555555555555555555443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=99.24  E-value=9e-06  Score=100.28  Aligned_cols=436  Identities=24%  Similarity=0.312  Sum_probs=281.7

Q ss_pred             HhHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHH-------------HHhHHHhHHHHHHHHHHHHhHHHH
Q 036820          107 KATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQL-------------KSAKEEQQLLMNKLNSANTTISGL  173 (651)
Q Consensus       107 ka~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLL-------------Kk~kEeeQSLlDQLnSLnsTLtSL  173 (651)
                      ..+...+..|+.+.++.|.....+...=..-..+++.+.....             ..+...=.-+.+++.........+
T Consensus       848 ~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~l  927 (1930)
T KOG0161|consen  848 QKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAEL  927 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456667777777777777766665544333333333322221             112333344556666666666677


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHH
Q 036820          174 GKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETE  253 (651)
Q Consensus       174 ~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e  253 (651)
                      ....+.+..-+++++..++.....+.+++..+..++.+++.==+.|..+.+.|+-|+.+-+..|+.++.+.+-|...|..
T Consensus       928 e~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek 1007 (1930)
T KOG0161|consen  928 ERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEK 1007 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77888888999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhHhh---hhhh--hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhch----hhhhhhhhhhhhHhHHHHHHHHHHHH
Q 036820          254 LKNLNSV---YKQN--ELNARASSLLVERDDSKQKLEAVQKEYKELKLSS----ENETASNAKRLREKKEELHQLKEKLE  324 (651)
Q Consensus       254 ~~nL~~~---y~qt--~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ss----E~~aa~da~lL~eke~~l~qLeekl~  324 (651)
                      .+.|+-.   |.++  ++...+..=...+.+.++....+.-+-.++.-+-    ..+.-.+.. |..++.+++++..+++
T Consensus      1008 ~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~-l~kke~El~~l~~k~e 1086 (1930)
T KOG0161|consen 1008 AKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQ-LKKKESELSQLQSKLE 1086 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence            8877654   3333  4443333323333333333333332222222211    123333333 4778888898888888


Q ss_pred             HHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHH---------------
Q 036820          325 LTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQS---------------  389 (651)
Q Consensus       325 ~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~---------------  389 (651)
                      .=-.+..+-+-.|-+|...+.++...|+.|=..+.++.-.       ..+...++.+|.++|++.               
T Consensus      1087 ~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~-------r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e 1159 (1930)
T KOG0161|consen 1087 DEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQ-------RRDLSEELEELKEELEEQGGTTAAQLELNKKRE 1159 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            8777777777777777777777777777766655555433       334444444444444444               


Q ss_pred             ---HhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHH
Q 036820          390 ---KDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKE  466 (651)
Q Consensus       390 ---~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kE  466 (651)
                         ..+..+|+.+.+.......+++......+.+    ...-.+.+-..|-.|.|-+..|+.-..+|..-++.+++...+
T Consensus      1160 ~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~e----l~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~ 1235 (1930)
T KOG0161|consen 1160 AEVQKLRRDLEEETLDHEAQIEELRKKHADSLAE----LQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKD 1235 (1930)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence               2233333333333333333333333222222    222345666777788888899999999999999999988888


Q ss_pred             HHHHHHHhHhhHHHHHHHHHH------------------HHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhh
Q 036820          467 LVNIYKKAEATANDLKEQKEI------------------VSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNR  528 (651)
Q Consensus       467 L~d~YKK~E~t~~eL~~ekki------------------v~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~  528 (651)
                      +-..-|++|....||...=.-                  +.-|++.|+..+.++..-......+...|++...=++++.|
T Consensus      1236 ~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r 1315 (1930)
T KOG0161|consen 1236 LEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETR 1315 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888889989776666432111                  22345555555555566666777888999999999999999


Q ss_pred             hHHHHhHHHhhhhhccccchhHHHHHHHhHHHH
Q 036820          529 NALELSKNLEKANSQISNLEDEKAVLYKSLTEQ  561 (651)
Q Consensus       529 ~~~~LS~~Le~ans~issle~eKevL~ksl~eq  561 (651)
                      .-..|+..+-.       ++.|+..|.+.+.+.
T Consensus      1316 ~k~~l~~~l~~-------l~~e~~~l~e~leee 1341 (1930)
T KOG0161|consen 1316 EKSALENALRQ-------LEHELDLLREQLEEE 1341 (1930)
T ss_pred             HHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence            88888776544       444455544444443

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.22  E-value=5e-06  Score=98.34  Aligned_cols=186  Identities=28%  Similarity=0.374  Sum_probs=141.5

Q ss_pred             chHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH
Q 036820          417 SLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQ  496 (651)
Q Consensus       417 ~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~  496 (651)
                      .+++....-..+..++..+.+.+.+-+++++..........+.++.++.++-++=..+.....++.....-...|..+++
T Consensus       752 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~  831 (1163)
T COG1196         752 ELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIE  831 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444455555666666666666666666666666666777777777777766666666777777777788888999


Q ss_pred             HHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHHHhHHHhhhhhccccchhHHHHHHHhHHHHHhhhHHHhhchHHHH
Q 036820          497 ALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAH  576 (651)
Q Consensus       497 al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~~Le~ans~issle~eKevL~ksl~eqk~~t~EAqeN~eDA~  576 (651)
                      .+..++..=.+....|...+++.+..+.++......+-.+...++..+..++++++.+.+-+.+....-.+....++++.
T Consensus       832 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  911 (1163)
T COG1196         832 ELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLR  911 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998888888888899999999999999999888888999999999999999999999999998888888888888888


Q ss_pred             HHHHHhhhhhhhhhHhhhhhHHHHhh
Q 036820          577 NLVMRLGQERKSLDKRSKKLEEELAS  602 (651)
Q Consensus       577 nli~~Lg~ERE~~e~r~kkLEeELAs  602 (651)
                      .-+..|...-..++-....+++++-.
T Consensus       912 ~~~~~l~~~~~~~~~~~~~~~~~~~~  937 (1163)
T COG1196         912 ERLEELEAKLERLEVELPELEEELEE  937 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            88877766665666555555555443

>PRK03918 chromosome segregation protein; Provisional

Probab=99.18  E-value=2.9e-05  Score=87.80  Aligned_cols=33  Identities=12%  Similarity=0.049  Sum_probs=18.0

Q ss_pred             chhhHHHHHhhhhhhhHhHHHHHHHHHHHhhhh
Q 036820           91 RSGVLGALYALTQNEKKATDATLEYMKARLKEK  123 (651)
Q Consensus        91 ~sGvlg~Ly~l~q~ekka~~~tiesm~~kL~e~  123 (651)
                      +.+.+-.+|.-+..-.+.+..+|..++..+.+.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l  188 (880)
T PRK03918        156 GLDDYENAYKNLGEVIKEIKRRIERLEKFIKRT  188 (880)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444455555555556666666666655443

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.15  E-value=4.5e-05  Score=87.35  Aligned_cols=122  Identities=20%  Similarity=0.323  Sum_probs=52.1

Q ss_pred             hHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhH
Q 036820          431 ELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARK  510 (651)
Q Consensus       431 El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk  510 (651)
                      ++..+++-+.+.+.++.....++.........++.++-..-+.++....++..=..-+..+..+++.+..++..-.+...
T Consensus       799 ~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  878 (1164)
T TIGR02169       799 ELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALR  878 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444443333333333332222222233344444444444444444444


Q ss_pred             hHHHhHHHHhhhHHHhhhhHHHHhHHHhhhhhccccchhHHH
Q 036820          511 SLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKA  552 (651)
Q Consensus       511 ~Le~dLeeaT~SldEmn~~~~~LS~~Le~ans~issle~eKe  552 (651)
                      .++..+++....++++....-.+.++++.....+..++...+
T Consensus       879 ~l~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~  920 (1164)
T TIGR02169       879 DLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLS  920 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444444444444443333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK03918 chromosome segregation protein; Provisional

Probab=99.11  E-value=5.6e-05  Score=85.60  Aligned_cols=71  Identities=25%  Similarity=0.318  Sum_probs=31.6

Q ss_pred             HhHHHhhhhhccccchhHHHHHHHhHHHHH-----hhhHHHhhchHHHHHHHHHhhhhhhhhhHhhhhhHHHHhhc
Q 036820          533 LSKNLEKANSQISNLEDEKAVLYKSLTEQK-----SIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASA  603 (651)
Q Consensus       533 LS~~Le~ans~issle~eKevL~ksl~eqk-----~~t~EAqeN~eDA~nli~~Lg~ERE~~e~r~kkLEeELAsA  603 (651)
                      +-.+|+..+..|+.++.+.+-|...+.+-.     ..-...++.++.+..=+..+..+.+.++.+...|++++...
T Consensus       624 ~~~~l~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~  699 (880)
T PRK03918        624 LEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKL  699 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444333332     22233333444444444444555555555555555544444

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.90  E-value=0.00036  Score=85.94  Aligned_cols=460  Identities=22%  Similarity=0.304  Sum_probs=212.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHH----
Q 036820          134 FESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLE----  209 (651)
Q Consensus       134 FEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae----  209 (651)
                      |+.+|.+.+.+..-...-.-.....|..+++++...++.+...+.++.....=+..++..+..+|.....-++.++    
T Consensus       634 ~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~  713 (1822)
T KOG4674|consen  634 KEKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNK  713 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666666666555444333444555555555555555555555554444444444444444444443333333222    


Q ss_pred             -----------------HHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhh--hhhhhhhh
Q 036820          210 -----------------EERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYK--QNELNARA  270 (651)
Q Consensus       210 -----------------~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~--qt~Ln~~v  270 (651)
                                       .+|.-==.-+.+|..-|+-|.+|-.---..-.+|...+..-..++..|+.+.+  ||-.|..-
T Consensus       714 ~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e  793 (1822)
T KOG4674|consen  714 NLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELE  793 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             11111111122222222222222221111122333344444445555554333  44666666


Q ss_pred             hhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHH
Q 036820          271 SSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKM  350 (651)
Q Consensus       271 ~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~m  350 (651)
                      .+....++..+.+|..|.-+...||..           |.++...+|.|...++.-|.++.   -.|.++..+++.+.+-
T Consensus       794 ~s~~~~k~~~e~~i~eL~~el~~lk~k-----------lq~~~~~~r~l~~~~~~~l~~~~---~~i~~~~~~~~~~~~~  859 (1822)
T KOG4674|consen  794 ESEMATKDKCESRIKELERELQKLKKK-----------LQEKSSDLRELTNSLEKQLENAQ---NLVDELESELKSLLTS  859 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhhhhHHHHHH---HHHHHHHHHHHHHHHH
Confidence            677777777888888888888777754           56777777777777776665553   2344444444444433


Q ss_pred             HHHhhhhhhhhH-------HHHHhhHHHHHhhh---------hhhhHHHHHHHHHHhhhhHH---HHHHHHHHHHH----
Q 036820          351 LDNELGNVKNLK-------YELQITQETLETTR---------NEASDLEKQLKQSKDSCADL---ETEISRIRAEF----  407 (651)
Q Consensus       351 Ld~E~~~~k~L~-------~~lq~Tqe~L~~sR---------~e~s~L~~~L~~~~~~~~~L---~~qiskl~~E~----  407 (651)
                      |++=-.++..|.       -.|+++..-....-         --...|...+.++.++-..|   ..+|+.+++.+    
T Consensus       860 l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~e  939 (1822)
T KOG4674|consen  860 LDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLE  939 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333222222222       22222221111111         11122333344442222222   22333333333    


Q ss_pred             ---HHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHH
Q 036820          408 ---AEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQ  484 (651)
Q Consensus       408 ---~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~e  484 (651)
                         ..|+..|..-..+...--+-+..+++++.+=+-.-+.++...+.++....+   +..++++|.-+.+.+..+|++.=
T Consensus       940 qsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k---~~e~~~~~~~~e~~sl~ne~~~~ 1016 (1822)
T KOG4674|consen  940 QSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTK---GKEDKLLDLSREISSLQNELKSL 1016 (1822)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---chhhhHHHHHHHhHHHHHHHHHH
Confidence               333333333334444555566777777775544444444444444433221   23344555555555555555554


Q ss_pred             HHHHHHHHHHHHHHHHHhhh------------------hHHHhHhHHHhHHHHhhhHHHhhhhHHHHhHHHh--------
Q 036820          485 KEIVSSLNKELQALEKQTSK------------------DKEARKSLETDLEEATKSLDEMNRNALELSKNLE--------  538 (651)
Q Consensus       485 kkiv~tLn~eL~al~~Q~~~------------------d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~~Le--------  538 (651)
                      .++...-|+-+.-+..++..                  -.+.+..|..==++.    ..||.-..-|-...+        
T Consensus      1017 ~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~----~~~~~e~~~Lk~~~~~~~~~l~e 1092 (1822)
T KOG4674|consen 1017 LKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEF----AKCNDELLKLKKSRESRHALLSE 1092 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhHHHHHhHHhh
Confidence            44444444444433333322                  222222222211222    223333333333333        


Q ss_pred             -----------------hhhhccccchhHHHHHHHhHHHHHhhhHH-----HhhchHHHHHHHHHhhhhhhhhhHhhhhh
Q 036820          539 -----------------KANSQISNLEDEKAVLYKSLTEQKSIANE-----SRENMEDAHNLVMRLGQERKSLDKRSKKL  596 (651)
Q Consensus       539 -----------------~ans~issle~eKevL~ksl~eqk~~t~E-----AqeN~eDA~nli~~Lg~ERE~~e~r~kkL  596 (651)
                                       ..+.+|..|+..--.|+--+.+=-....+     ..+-.+|-+|+|..|-+||+-++.     
T Consensus      1093 ~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Ekei~~t----- 1167 (1822)
T KOG4674|consen 1093 QERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEKEIAET----- 1167 (1822)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHhHHHHHhh-----
Confidence                             33333333333333333222211111110     001145559999999999998765     


Q ss_pred             HHHHhhcccchhhhhhccccccCcc
Q 036820          597 EEELASAKGEILRLRSQINSSKTLV  621 (651)
Q Consensus       597 EeELAsAKGEiLrLR~qi~ss~s~~  621 (651)
                        ++-.++-|.+|||+|+.++...+
T Consensus      1168 --k~~~lk~e~~~L~qq~~~~~k~i 1190 (1822)
T KOG4674|consen 1168 --KLDTLKRENARLKQQVASLNRTI 1190 (1822)
T ss_pred             --hHHHHHHHHHHHHHHHHHHHHHH
Confidence              56788999999999998865444

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.88  E-value=0.00066  Score=80.91  Aligned_cols=194  Identities=30%  Similarity=0.435  Sum_probs=104.0

Q ss_pred             cchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 036820          416 NSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKEL  495 (651)
Q Consensus       416 ~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL  495 (651)
                      +.+.+.+.--..+..+++....-++..+..++....++....+..+.+++++-.+.-.+......+       ..|+.++
T Consensus       709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~l~~~~  781 (1163)
T COG1196         709 RQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEAL-------AKLKEEI  781 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence            334444444455555555556666666666666666666666666666655554444333333222       3444444


Q ss_pred             HHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhh--------------hhHHHHhHHHhhhhhccccchhHHHHHHHhHHHH
Q 036820          496 QALEKQTSKDKEARKSLETDLEEATKSLDEMN--------------RNALELSKNLEKANSQISNLEDEKAVLYKSLTEQ  561 (651)
Q Consensus       496 ~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn--------------~~~~~LS~~Le~ans~issle~eKevL~ksl~eq  561 (651)
                      +.+......-.+.+..++..+..+-.=++.+.              .-.-.+-.+...+...+..++.+-..+...+.+.
T Consensus       782 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~  861 (1163)
T COG1196         782 EELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEEL  861 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            44443333333444444443333321111111              1111112223333334444444444555555555


Q ss_pred             HhhhHHHhhchHHHHHHHHHhhhhhhhhhHhhhhhHHHHhhcccchhhhhhcccc
Q 036820          562 KSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINS  616 (651)
Q Consensus       562 k~~t~EAqeN~eDA~nli~~Lg~ERE~~e~r~kkLEeELAsAKGEiLrLR~qi~s  616 (651)
                      +..-.+++..+.+...-+..+-.+++.++.....++.++...+=+|-+++..++.
T Consensus       862 ~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  916 (1163)
T COG1196         862 KEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEE  916 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666667777777777777788888888888888888888888777777765

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.85  E-value=0.00089  Score=82.71  Aligned_cols=435  Identities=18%  Similarity=0.227  Sum_probs=254.3

Q ss_pred             hhhhHhHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHh-------HHHhHHHHHHHHHHHHhHHHHHH
Q 036820          103 QNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSA-------KEEQQLLMNKLNSANTTISGLGK  175 (651)
Q Consensus       103 q~ekka~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk~-------kEeeQSLlDQLnSLnsTLtSL~k  175 (651)
                      -.|+.-++.++..|.+-..+.|.........|+.++...+..+..|-+++       .+....+.-+|..+.++|..+..
T Consensus       772 ~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~  851 (1822)
T KOG4674|consen  772 SAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELES  851 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            35667778888889999999999999999999999998888887776332       33333334444444444444444


Q ss_pred             HHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHH------------HHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhh
Q 036820          176 ELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEE------------RKQKLDRIEGLQDKINLLSLELREKDDGVQKL  243 (651)
Q Consensus       176 eLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~e------------LeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l  243 (651)
                      .+.++...+......|..+.+.+...+.-+......            ..-..+.+....++|+-|-..+++-..+|+++
T Consensus       852 ~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~y  931 (1822)
T KOG4674|consen  852 ELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREY  931 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444333333322221            11223344455555655666666666666666


Q ss_pred             hhhhhhhHHHhhhhHhhhhhh--hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHH
Q 036820          244 SSSLQQKETELKNLNSVYKQN--ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKE  321 (651)
Q Consensus       244 ~SsLa~KE~e~~nL~~~y~qt--~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLee  321 (651)
                      -.-...-|.-+...++.|+++  ++=.++..+..+....+.+|++|.++..+|..-.+.-       ...+++++-.+-.
T Consensus       932 qe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~-------~k~~e~~~~~~~~ 1004 (1822)
T KOG4674|consen  932 QEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELS-------TKGKEDKLLDLSR 1004 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------ccchhhhHHHHHH
Confidence            666566666666677777777  6667788888889999999999999998887433221       1234555555666


Q ss_pred             HHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHH-------HhhHHHHHhhhhhhhHHHHHHHHHHhhhh
Q 036820          322 KLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYEL-------QITQETLETTRNEASDLEKQLKQSKDSCA  394 (651)
Q Consensus       322 kl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~l-------q~Tqe~L~~sR~e~s~L~~~L~~~~~~~~  394 (651)
                      +++.+.++...-..+|-+-+.-..+++.=|+-+...+.......       .-+-.+|.+.|.++++.-.++...+....
T Consensus      1005 e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~ 1084 (1822)
T KOG4674|consen 1005 EISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRE 1084 (1822)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            66666666666666666666666666666666655544443322       23456677888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHh--hhH---HHHHHHHhhhhhhHHHHH
Q 036820          395 DLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQN--VSH---ELEATAENRDSLRKELVN  469 (651)
Q Consensus       395 ~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~--~S~---eL~~~~e~rd~L~kEL~d  469 (651)
                      .+....+.+-.-|.|-+..|..-+...+.-...|-...-..-+.+...-.-..+  .|.   .+--...----|.+|..=
T Consensus      1085 ~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Ekei 1164 (1822)
T KOG4674|consen 1085 SRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEKEI 1164 (1822)
T ss_pred             HHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHhHHHH
Confidence            888888888888888888888877777666655555444443333322221110  000   000011111123444444


Q ss_pred             HHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-HHhHhHH--HhHHHHhhhHHHhh---hhHHHHhHHHhhhhhc
Q 036820          470 IYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDK-EARKSLE--TDLEEATKSLDEMN---RNALELSKNLEKANSQ  543 (651)
Q Consensus       470 ~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~-EaRk~Le--~dLeeaT~SldEmn---~~~~~LS~~Le~ans~  543 (651)
                      +=-|++.+-.|...=+.-|+++|+.++-|.--+.... ..+.+..  ...++-++-..+||   .+-.+|=++++.-..+
T Consensus      1165 ~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k 1244 (1822)
T KOG4674|consen 1165 AETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEK 1244 (1822)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            4456666666666666667777777666654333222 1222222  22344555555666   5555555544444444


Q ss_pred             c
Q 036820          544 I  544 (651)
Q Consensus       544 i  544 (651)
                      |
T Consensus      1245 ~ 1245 (1822)
T KOG4674|consen 1245 I 1245 (1822)
T ss_pred             H
Confidence            3

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.83  E-value=0.00041  Score=76.58  Aligned_cols=364  Identities=25%  Similarity=0.328  Sum_probs=230.1

Q ss_pred             HHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhh
Q 036820          153 KEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLE  232 (651)
Q Consensus       153 kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e  232 (651)
                      +++=.-+-.+|......=..+.++|...+.+|++++.+++.+...-..+..+.+.+.-.+++              +.+.
T Consensus        40 qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e--------------~e~~  105 (522)
T PF05701_consen   40 QEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKE--------------LEQG  105 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH--------------Hhhh
Confidence            33344455667777777778888899999999999999998888877777776665544432              1122


Q ss_pred             hhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHh
Q 036820          233 LREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREK  312 (651)
Q Consensus       233 ~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~ek  312 (651)
                      +-+....+         ...++.+-..-|         ...+.+-+...++|..+.++|..+-              .+|
T Consensus       106 ~~~~~~~~---------~k~ele~~~~q~---------~~~~~eL~~~k~EL~~lr~e~~~~~--------------~~k  153 (522)
T PF05701_consen  106 IAEEASVA---------WKAELESAREQY---------ASAVAELDSVKQELEKLRQELASAL--------------DAK  153 (522)
T ss_pred             hcccchHH---------HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHH
Confidence            22211111         112222333333         3344455567778888999987642              234


Q ss_pred             HHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHh-hhhhhhhH----------HHHHhhHHHHHhhhhhhhH
Q 036820          313 KEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNE-LGNVKNLK----------YELQITQETLETTRNEASD  381 (651)
Q Consensus       313 e~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E-~~~~k~L~----------~~lq~Tqe~L~~sR~e~s~  381 (651)
                      +.-+.+-    ..|...+..+...+.+|+.|+..++.-|+-- +..+..-+          .....-+..|.....++..
T Consensus       154 ~~A~~~a----eea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~  229 (522)
T PF05701_consen  154 NAALKQA----EEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEE  229 (522)
T ss_pred             HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444433    3355556667777888888888888877752 22222221          2234445557777777777


Q ss_pred             HHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHHHhcchH---HHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHH
Q 036820          382 LEKQLKQSKDSCADLE---TEISRIRAEFAEVKHTLGNSLD---EAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEA  455 (651)
Q Consensus       382 L~~~L~~~~~~~~~L~---~qiskl~~E~~e~ke~l~~~l~---eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~  455 (651)
                      |..++...+.+..+|.   ..|..|+.|+....+   .+++   +++.....+...|.+++.=|..++..|+.+-.++..
T Consensus       230 L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~---~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~  306 (522)
T PF05701_consen  230 LKEELEAAKDLESKLAEASAELESLQAELEAAKE---SKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASS  306 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777666   677777777777776   3333   366667777777899999999999999999999999


Q ss_pred             HHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHHHhH
Q 036820          456 TAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSK  535 (651)
Q Consensus       456 ~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~  535 (651)
                      ..-.-++|+.||-.+=.-+..+.+....=.-.|..|+-+|..+...+-.-...-.       ++-.-.++|+..--.++.
T Consensus       307 L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~-------~~k~~~~~l~~~Lqql~~  379 (522)
T PF05701_consen  307 LRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEE-------KAKEAMSELPKALQQLSS  379 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhc-------chhhhHHHHHHHHHHHHH
Confidence            9889999999998777777777776666666778888888877666533222222       222233444444445555


Q ss_pred             HHhhhhhccccchhHHHHHHHhHHHHHhhhHHHhhchHHHH
Q 036820          536 NLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAH  576 (651)
Q Consensus       536 ~Le~ans~issle~eKevL~ksl~eqk~~t~EAqeN~eDA~  576 (651)
                      +.+.|+........|-..+..-+..-|-....++.-+.-|+
T Consensus       380 Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~  420 (522)
T PF05701_consen  380 EAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAAL  420 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666555555555555555555555555555555555444

Several sequences in this family are described as being myosin heavy chain-like.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.78  E-value=0.00039  Score=80.46  Aligned_cols=131  Identities=22%  Similarity=0.335  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhh
Q 036820          183 FIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYK  262 (651)
Q Consensus       183 tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~  262 (651)
                      ..--.+.+++++...|.....-+..++.+|+..-+.-...+..|..|-.++..|+.+..-|-+..-....+|..=+.+++
T Consensus       281 ~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~  360 (775)
T PF10174_consen  281 HSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLE  360 (775)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            33334555666666666666666677777776666666667777777777777777666666655555555555555554


Q ss_pred             hh------------hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHH
Q 036820          263 QN------------ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLE  324 (651)
Q Consensus       263 qt------------~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~  324 (651)
                      +-            -+...|.-|.-.-+-...+|+.|++.|-.|-           +.|.+|+.++..+.+.|.
T Consensus       361 kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Le-----------e~l~ekd~ql~~~k~Rl~  423 (775)
T PF10174_consen  361 KKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLE-----------EQLREKDRQLDEEKERLS  423 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHh
Confidence            43            2333344455555555667777777765442           456788888888888877

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PRK01156 chromosome segregation protein; Provisional

Probab=98.78  E-value=0.001  Score=76.54  Aligned_cols=75  Identities=24%  Similarity=0.357  Sum_probs=35.1

Q ss_pred             HHHhhhHHHhhhhHHHHhHHHhhhhhccccchhHHHHHHHh---HHHHHhhhHHHhhchHHHHHHHHHhhhhhhhhhH
Q 036820          517 EEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKS---LTEQKSIANESRENMEDAHNLVMRLGQERKSLDK  591 (651)
Q Consensus       517 eeaT~SldEmn~~~~~LS~~Le~ans~issle~eKevL~ks---l~eqk~~t~EAqeN~eDA~nli~~Lg~ERE~~e~  591 (651)
                      ...-..+.+++...--+.++++..+..+..++.+.+.+..-   +.+....-..+.+.++.-...+..|..-|.-|+.
T Consensus       670 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~l~~~~~~~~~l~~~r~~l~k  747 (895)
T PRK01156        670 KEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKKIKKAIGDLKRLREAFDK  747 (895)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            33344444555555555555555555555555555555443   3333333333333333333344445555555554

>PRK01156 chromosome segregation protein; Provisional

Probab=98.77  E-value=0.0011  Score=76.36  Aligned_cols=27  Identities=4%  Similarity=0.106  Sum_probs=11.4

Q ss_pred             hhhhHHHHHhhHHHHHhhhhhhhHHHH
Q 036820          358 VKNLKYELQITQETLETTRNEASDLEK  384 (651)
Q Consensus       358 ~k~L~~~lq~Tqe~L~~sR~e~s~L~~  384 (651)
                      .+.|...+......+...-.+...+..
T Consensus       365 ~~~l~~~l~~~~~~~~~~~~~~~~l~~  391 (895)
T PRK01156        365 YNSYLKSIESLKKKIEEYSKNIERMSA  391 (895)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            334444444444444444444444433

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=98.72  E-value=2e-09  Score=123.56  Aligned_cols=487  Identities=21%  Similarity=0.293  Sum_probs=0.0

Q ss_pred             hHHHHHhhHHHHHHHHHHHHHHHHHHHHH---hHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHH
Q 036820          123 KEAAIVSLEKDFESKLQNEQEQRTKQLKS---AKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLL  199 (651)
Q Consensus       123 ~Eaa~~~lDedFEkRLKevQeeVkkLLKk---~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLs  199 (651)
                      .|++|..|.+.|-+-+-+...++..+-+.   +--..+.|-..++++...|..+.+.-.+....+-.+..++..+...+.
T Consensus       118 ~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~kle  197 (859)
T PF01576_consen  118 HEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLE  197 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Confidence            45666666666666666666555555411   122233444444444444444444444333333333333333333333


Q ss_pred             hhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhh---------------
Q 036820          200 KFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQN---------------  264 (651)
Q Consensus       200 qAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt---------------  264 (651)
                      .++..+..+.       ....-|+..++=|+..+.+.+..+..++..-+.-+.++..+..-++.-               
T Consensus       198 e~er~~~el~-------~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le  270 (859)
T PF01576_consen  198 ESERQRNELT-------EQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLE  270 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHH
Confidence            2222222111       112233333444444444444444444433333333333333333222               


Q ss_pred             ----hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhH----hHHHHHHHHHHHHHHHhHhhhchhH
Q 036820          265 ----ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLRE----KKEELHQLKEKLELTLDEACENRAT  336 (651)
Q Consensus       265 ----~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~e----ke~~l~qLeekl~~Al~e~~k~~~~  336 (651)
                          .|+..+..-...+.++...|..+.-+..+++.-.|.-+....+-|-+    -...|..+.+.+..+-.....-.-.
T Consensus       271 ~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~  350 (859)
T PF01576_consen  271 HELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKT  350 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                23333333334455555566666667777777777666664444332    2456677777777777776666666


Q ss_pred             HHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 036820          337 IAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGN  416 (651)
Q Consensus       337 Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~  416 (651)
                      ..-|+.|++|+.--|+..-..+..|-.-.......|...+..+..+..+++.+..-|..+.++|-+|..++.+.++.   
T Consensus       351 k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~---  427 (859)
T PF01576_consen  351 KKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQ---  427 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHH---
Confidence            77799999999988888888887777777777778888899999999999999999999999999999998776654   


Q ss_pred             chHHHHhhhhhhhhhHHhHHHHH----------HHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHH--
Q 036820          417 SLDEAKRSGEVLAGELFAAKEVL----------KKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQ--  484 (651)
Q Consensus       417 ~l~eak~~~~~Ls~El~s~ke~l----------~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~e--  484 (651)
                       ++..+...+.|.+||.-+...+          .|++-.|+.--.+|....+.-.+--...-+.+..++...+.++.+  
T Consensus       428 -~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~e  506 (859)
T PF01576_consen  428 -LEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIE  506 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -HHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             4567777788888887665543          344444444444444444333333333445566666666655554  


Q ss_pred             HHH----------HHHHHHHHHHHHHHhhh-------hHHHhHhHHHhHHHHhhhHHHhhhhHHHHhHHHhhhhhccccc
Q 036820          485 KEI----------VSSLNKELQALEKQTSK-------DKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNL  547 (651)
Q Consensus       485 kki----------v~tLn~eL~al~~Q~~~-------d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~~Le~ans~issl  547 (651)
                      |.|          =..+.+.+..|+.++-.       ---.+|-|+.|+.+....||.-|++.--+.+.+......|..+
T Consensus       507 r~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdl  586 (859)
T PF01576_consen  507 RELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDL  586 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence            222          12344455555554422       2345688999999999999999999999999998888888876


Q ss_pred             hhHHHHHHHhHHHHHhhhHHHhhchHHHHHHHHHhhhhhhhhhHhhhhhHHHHhhcccchhhhhhccccccCc
Q 036820          548 EDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSKTL  620 (651)
Q Consensus       548 e~eKevL~ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ERE~~e~r~kkLEeELAsAKGEiLrLR~qi~ss~s~  620 (651)
                      ..+-+--..+..+.......+...+-..++=+..+...++..+.--|.+|-|+.-+.++|=-|-++.++.-..
T Consensus       587 q~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~  659 (859)
T PF01576_consen  587 QRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTSQNSSLSEE  659 (859)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence            6555555555555555555555666666777778888888888888999999999998888887776665443

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.42  E-value=0.0065  Score=67.36  Aligned_cols=347  Identities=20%  Similarity=0.284  Sum_probs=173.3

Q ss_pred             HHHHHHHHHHHHHHHHH---hHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhh---------
Q 036820          135 ESKLQNEQEQRTKQLKS---AKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFG---------  202 (651)
Q Consensus       135 EkRLKevQeeVkkLLKk---~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAE---------  202 (651)
                      +..|..+|+++.++-+.   .-......++-|..++.++..+...|+........+....+-...++...+         
T Consensus        33 e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~  112 (522)
T PF05701_consen   33 ETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASV  112 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchH
Confidence            34556666666665533   334455677788899999999999999877665555555554444444442         


Q ss_pred             ---hhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhh--------hhhhh--
Q 036820          203 ---EDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQN--------ELNAR--  269 (651)
Q Consensus       203 ---edkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt--------~Ln~~--  269 (651)
                         ..++.++.....-+..++.-.+-+.-+.+|+          .+.+..|-.-++.--..-.-.        +|+..  
T Consensus       113 ~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~----------~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~  182 (522)
T PF05701_consen  113 AWKAELESAREQYASAVAELDSVKQELEKLRQEL----------ASALDAKNAALKQAEEAVSAAEENEEKVEELSKEII  182 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               2233333333333333333333333333332          222222222222111111111        22222  


Q ss_pred             -----hhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhH---hhhchhHHHhhh
Q 036820          270 -----ASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDE---ACENRATIAKFT  341 (651)
Q Consensus       270 -----v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e---~~k~~~~Ia~L~  341 (651)
                           +.+.-.+..++.++.-.+.-++......-      -. -|.+.+..+.+|...++.+=+-   ......-|..|.
T Consensus       183 ~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~------~~-~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq  255 (522)
T PF05701_consen  183 ALKESLESAKLAHIEAEEERIEIAAEREQDAEEW------EK-ELEEAEEELEELKEELEAAKDLESKLAEASAELESLQ  255 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 22222333333333333332222222111      11 1456666666776666433221   112334555666


Q ss_pred             hhHHHHHH-HHHHh---hhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcc
Q 036820          342 QEKDDLRK-MLDNE---LGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNS  417 (651)
Q Consensus       342 ~e~~~~r~-mLd~E---~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~  417 (651)
                      .|+...+. -++.+   -.....++..|.+...-|...+..+-+...++..++....-|..++-+...+++.+++    +
T Consensus       256 ~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke----~  331 (522)
T PF05701_consen  256 AELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKE----R  331 (522)
T ss_pred             HHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence            66555554 11111   1222333334555555555555555555555555566666666666666666666555    3


Q ss_pred             hHHHHhhhhhhhhhHHhHHHHH-------HHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHH
Q 036820          418 LDEAKRSGEVLAGELFAAKEVL-------KKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSS  490 (651)
Q Consensus       418 l~eak~~~~~Ls~El~s~ke~l-------~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~t  490 (651)
                      ...+......|-.||..++--|       .++.+.+..+...|-.++..-+..+++.-.+--.+.....+...=|-.+.|
T Consensus       332 e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t  411 (522)
T PF05701_consen  332 EKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKT  411 (522)
T ss_pred             HHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555444444       444555555556665555555666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHh
Q 036820          491 LNKELQALEKQT  502 (651)
Q Consensus       491 Ln~eL~al~~Q~  502 (651)
                      .+..|++..+-+
T Consensus       412 ~E~rL~aa~ke~  423 (522)
T PF05701_consen  412 AEERLEAALKEA  423 (522)
T ss_pred             HHHHHHHHHHHH
Confidence            666666655444

Several sequences in this family are described as being myosin heavy chain-like.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.41  E-value=0.0013  Score=73.68  Aligned_cols=172  Identities=23%  Similarity=0.307  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHH--HHH
Q 036820          395 DLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVN--IYK  472 (651)
Q Consensus       395 ~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d--~YK  472 (651)
                      .+..++..+..++.-+    +..+...++.+..|+.||.++.-+..+|.-+|+..--+.+.+.-.-.....+|-.  +++
T Consensus       280 ~~~~e~e~LkeqLr~~----qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~  355 (546)
T PF07888_consen  280 QLQQENEALKEQLRSA----QEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQW  355 (546)
T ss_pred             hHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444333    4455667889999999999999999999999999988777776545555555544  344


Q ss_pred             HhHhhHH--HHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHHHhH---HHhhhhhccccc
Q 036820          473 KAEATAN--DLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSK---NLEKANSQISNL  547 (651)
Q Consensus       473 K~E~t~~--eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~---~Le~ans~issl  547 (651)
                      --|.++-  .-...|.=+..|+.|++-+++-+..+.-.|..|+.+|....      ..|-+-||.   +|..-++.+--+
T Consensus       356 ~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~------D~n~vqlsE~~rel~Elks~lrv~  429 (546)
T PF07888_consen  356 AQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEK------DCNRVQLSENRRELQELKSSLRVA  429 (546)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHHHHHHHHHH
Confidence            4444442  22444556888999999999988888889999999996432      333344443   344444433333


Q ss_pred             hhHHHHHHHhHHHHHhhhHHHhhchHHHHHHHHHhhhhh
Q 036820          548 EDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQER  586 (651)
Q Consensus       548 e~eKevL~ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ER  586 (651)
                      ..|||          +-..|.|+=|++.+-|=.|||+-=
T Consensus       430 qkEKE----------ql~~EkQeL~~yi~~Le~r~~~~~  458 (546)
T PF07888_consen  430 QKEKE----------QLQEEKQELLEYIERLEQRLDKVA  458 (546)
T ss_pred             HHHHH----------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44444          345689999999999999999863

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.34  E-value=0.014  Score=68.01  Aligned_cols=479  Identities=22%  Similarity=0.299  Sum_probs=219.2

Q ss_pred             hhHHHHHhhhhhhhHhHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHH---HhHHHhHHHH------HHH
Q 036820           93 GVLGALYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLK---SAKEEQQLLM------NKL  163 (651)
Q Consensus        93 Gvlg~Ly~l~q~ekka~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLK---k~kEeeQSLl------DQL  163 (651)
                      .++-+=|-..+-|-..++.||..+..+| .                  .|.++..|..   ..+++...+.      +++
T Consensus        56 ~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r------------------~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~  116 (775)
T PF10174_consen   56 SRLKEQLRVTQEENQKAQEEIQALQEEL-R------------------AQRELNRLQQELEKAQYEFESLQELDKAQEQF  116 (775)
T ss_pred             HhHHHHHHHHHhhHHHHHHHHHHHHHHH-H------------------HhhHHHHHHHHhhhcccccchhhhhhhHHHHH
Confidence            4444555555666666667776666666 2                  3333333331   1222222222      233


Q ss_pred             HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhh
Q 036820          164 NSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKL  243 (651)
Q Consensus       164 nSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l  243 (651)
                      ..+..--..+..++...+.+++.+...++.++..+..+.+.++.+...|..|=-.-+.--+- +.....+-+.+..+..|
T Consensus       117 ~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~-~~~~~~~~~~e~~~~~l  195 (775)
T PF10174_consen  117 ERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEED-NEALRRIREAEARIMRL  195 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhh-hHHHHHHHHHHHHHHHH
Confidence            33333333334444444455555555555555555555555555444443221110000000 12233688899999999


Q ss_pred             hhhhhhhHHHhhh----hHhhhhhhhhhh---hhhhhHhcccchHHH----HHHHHHHHHHhhhchhhhhhhhhhhhhHh
Q 036820          244 SSSLQQKETELKN----LNSVYKQNELNA---RASSLLVERDDSKQK----LEAVQKEYKELKLSSENETASNAKRLREK  312 (651)
Q Consensus       244 ~SsLa~KE~e~~n----L~~~y~qt~Ln~---~v~sL~~ek~~~~~k----~~~l~key~~lk~ssE~~aa~da~lL~ek  312 (651)
                      -+-|..++.++.-    |+.-|....=++   .+++++-.|+....-    |..++-+..-|+..-+.=.       .++
T Consensus       196 e~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~-------~~r  268 (775)
T PF10174_consen  196 ESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSE-------ADR  268 (775)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-------cch
Confidence            9999999999954    444443332122   245555555432222    2223444444443222111       123


Q ss_pred             HHHHHHHHHHHHHHHhHhhhchhHHHhhhh-------hHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhh-------hh
Q 036820          313 KEELHQLKEKLELTLDEACENRATIAKFTQ-------EKDDLRKMLDNELGNVKNLKYELQITQETLETTR-------NE  378 (651)
Q Consensus       313 e~~l~qLeekl~~Al~e~~k~~~~Ia~L~~-------e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR-------~e  378 (651)
                      +...++|+..-+.++--  |++  |..+..       |+.++.+-|++=-.....++.-|.+.++.|....       .+
T Consensus       269 ~~~~k~le~~~s~~~~m--K~k--~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsd  344 (775)
T PF10174_consen  269 DRLDKQLEVYKSHSLAM--KSK--MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSD  344 (775)
T ss_pred             HHHHHHHHHHHhhHHHH--HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44445554443333321  111  222222       2222222222222222233444444444444333       33


Q ss_pred             hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH---HhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHH
Q 036820          379 ASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHT---LGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEA  455 (651)
Q Consensus       379 ~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~---l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~  455 (651)
                      |..|...|++....+.+...+|.+++.|.+-++--   |...++-.+.--.+|=+.+-.+-+.|+.-...|...-.-|.+
T Consensus       345 ve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~  424 (775)
T PF10174_consen  345 VEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSS  424 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44444445555555555544444444443332211   122233333333344444444444443222222211111110


Q ss_pred             --HHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHH
Q 036820          456 --TAENRDSLRKELVNIYKKAEATANDLKEQKEIVS-SLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALE  532 (651)
Q Consensus       456 --~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~-tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~  532 (651)
                        -+..-|.+...|=.+-.-.+.....|.+.|.-.. ....+++.+.+++..=+..-.+|+.+|.+.+-+|+.--.-+..
T Consensus       425 ~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~  504 (775)
T PF10174_consen  425 QADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASK  504 (775)
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHH
Confidence              0000011222222222222333333322221111 2334556666666666666778999999999999998888888


Q ss_pred             HhHHHhhhhhccccchhHHH-------HHHHhHHH-------------HHhhhHHHhhchHHHHHHHHH-------hhhh
Q 036820          533 LSKNLEKANSQISNLEDEKA-------VLYKSLTE-------------QKSIANESRENMEDAHNLVMR-------LGQE  585 (651)
Q Consensus       533 LS~~Le~ans~issle~eKe-------vL~ksl~e-------------qk~~t~EAqeN~eDA~nli~~-------Lg~E  585 (651)
                      |+...+...|+|.+++-+-+       =|...|.-             =.+-+....+..+.|++=|-|       +-+|
T Consensus       505 l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~E  584 (775)
T PF10174_consen  505 LASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENE  584 (775)
T ss_pred             HhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888777654321       11111111             000112233444555554444       4468


Q ss_pred             hhhhhHhhhhhHHHHhh
Q 036820          586 RKSLDKRSKKLEEELAS  602 (651)
Q Consensus       586 RE~~e~r~kkLEeELAs  602 (651)
                      +.+.+++.+-|+.+|.-
T Consensus       585 K~~ke~ki~~LekeLek  601 (775)
T PF10174_consen  585 KNDKEKKIGELEKELEK  601 (775)
T ss_pred             HHhHHHHHHHHHHHHHH
Confidence            88888888888888643

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.29  E-value=0.0027  Score=64.25  Aligned_cols=289  Identities=19%  Similarity=0.288  Sum_probs=148.4

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHH--------HHHHHHHhHHHHHHHHHHHHHHHHhH
Q 036820          126 AIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTIS--------GLGKELQNEKRFIEELRIEIDSLQTS  197 (651)
Q Consensus       126 a~~~lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLt--------SL~keLqnek~tVEdlk~eIeql~ss  197 (651)
                      .|..|+.-|...+-.|.        .+-..+..|-.+++.+.....        ....++...+..|.++.....++...
T Consensus         5 eL~~LNdRla~YIekVr--------~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e   76 (312)
T PF00038_consen    5 ELQSLNDRLASYIEKVR--------FLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELE   76 (312)
T ss_dssp             HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH--------HHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhh
Confidence            46666666665554443        234455666666666666621        13356667778888888888888888


Q ss_pred             HHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcc
Q 036820          198 LLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVER  277 (651)
Q Consensus       198 LsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek  277 (651)
                      +..+...++.++.++.+.......++.-|+-|..++.+---..-.|...+.....++.-+...|.+.             
T Consensus        77 ~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeE-------------  143 (312)
T PF00038_consen   77 IDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEE-------------  143 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhh-------------
Confidence            8888888888888888887777777777776664444333333333333333333333333333331             


Q ss_pred             cchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhh
Q 036820          278 DDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGN  357 (651)
Q Consensus       278 ~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~  357 (651)
                            +.+|..+.. -..+.+.+...               .-.|..||.+.+.....+++-+++  ++......-+..
T Consensus       144 ------i~~L~~~~~-~~~~~e~~~~~---------------~~dL~~~L~eiR~~ye~~~~~~~~--e~e~~y~~k~~~  199 (312)
T PF00038_consen  144 ------IEELREQIQ-SSVTVEVDQFR---------------SSDLSAALREIRAQYEEIAQKNRE--ELEEWYQSKLEE  199 (312)
T ss_dssp             ------HHTTSTT--------------------------------HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred             ------hhhhhhccc-cccceeecccc---------------cccchhhhhhHHHHHHHHHhhhhh--hhhhhccccccc
Confidence                  111111111 00111111111               111566666666555555544431  222222222222


Q ss_pred             h----hhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHH
Q 036820          358 V----KNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELF  433 (651)
Q Consensus       358 ~----k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~  433 (651)
                      +    ..-...+..+.+-+...|..+..|..+|+..+..+..|+.+|..+...+..-.+.++.              .+.
T Consensus       200 l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~--------------~i~  265 (312)
T PF00038_consen  200 LRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQA--------------EIA  265 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHH
T ss_pred             ccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHH--------------hhh
Confidence            1    1122333444444455555555555555555555555555555555444444433332              344


Q ss_pred             hHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHh
Q 036820          434 AAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKA  474 (651)
Q Consensus       434 s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~  474 (651)
                      ....-+.+.+.+++....+....+...=+|..|+ .+|.|+
T Consensus       266 ~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EI-atYR~L  305 (312)
T PF00038_consen  266 ELEEELAELREEMARQLREYQELLDVKLALDAEI-ATYRKL  305 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHH
Confidence            5555566667777777777777777788888885 678775

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.19  E-value=0.011  Score=66.76  Aligned_cols=345  Identities=17%  Similarity=0.195  Sum_probs=227.5

Q ss_pred             HhHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHH---HhHHHHHHHHHhHHHH
Q 036820          107 KATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSAN---TTISGLGKELQNEKRF  183 (651)
Q Consensus       107 ka~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLn---sTLtSL~keLqnek~t  183 (651)
                      --.+.||.+-..=++.-+. .+.++++|..+|...-.-+....-..+.....|.+|++++.   ..+.++++.-...++=
T Consensus       196 ~f~dy~~~~Y~~fl~g~d~-~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D  274 (581)
T KOG0995|consen  196 LFFDYTIRSYTSFLKGEDN-SSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDD  274 (581)
T ss_pred             HHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhH
Confidence            3446688888887777776 89999999999988777666666556667778888888765   3566677777777777


Q ss_pred             HHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhh
Q 036820          184 IEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQ  263 (651)
Q Consensus       184 VEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~q  263 (651)
                      +.....-..+..+.-..+...+..+..++++|-+.|+-||..+.=|--.|......+....--=++.+..-++|+.|-.+
T Consensus       275 ~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~  354 (581)
T KOG0995|consen  275 VNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSE  354 (581)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777788888888899999999999999998888887777777666666655556666666666665444


Q ss_pred             h-hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhc--------h---------hhhhh------------hhhhhhhHhH
Q 036820          264 N-ELNARASSLLVERDDSKQKLEAVQKEYKELKLS--------S---------ENETA------------SNAKRLREKK  313 (651)
Q Consensus       264 t-~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~s--------s---------E~~aa------------~da~lL~eke  313 (651)
                      - .|-..   +-..+.++..-..+|++.+.++...        .         ..+|+            +--+|+.+..
T Consensus       355 ~d~l~k~---vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~  431 (581)
T KOG0995|consen  355 LDRLSKE---VWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEIS  431 (581)
T ss_pred             HHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHH
Confidence            3 11111   1112223333344444444433221        1         11111            1236788999


Q ss_pred             HHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhh-hhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHh-
Q 036820          314 EELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVK-NLKYELQITQETLETTRNEASDLEKQLKQSKD-  391 (651)
Q Consensus       314 ~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k-~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~-  391 (651)
                      .++|+-+.++..--...+.-..+|+++++.+..+.    -|+..+. ......+.+++-..+.|.|.-.|+++|...+- 
T Consensus       432 ~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~----~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~  507 (581)
T KOG0995|consen  432 EELHEAENELETLQEHFSNKASTIEEKIQILGEIE----LELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLV  507 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998888888888888999888876653    3443333 33344577889999999999999999876543 


Q ss_pred             ---hhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHH
Q 036820          392 ---SCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELV  468 (651)
Q Consensus       392 ---~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~  468 (651)
                         .-.+.+..|-.+.-|+.++..+..+....--.--..+-+.+...+..++..=|++.+             .+++|+-
T Consensus       508 ~~~~m~~a~~~v~s~e~el~~~~~~~~eer~ki~~ql~~~i~~i~~~k~~iqs~le~~k~-------------~~~~~~~  574 (581)
T KOG0995|consen  508 LNTSMKEAEELVKSIELELDRMVATGEEERQKIAKQLFAVIDQISDFKVSIQSSLENLKA-------------DLHKECE  574 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHH
Confidence               334445556666666666666666555544222223334555555555444444332             5666666


Q ss_pred             HHHH
Q 036820          469 NIYK  472 (651)
Q Consensus       469 d~YK  472 (651)
                      ++||
T Consensus       575 ei~~  578 (581)
T KOG0995|consen  575 EIEK  578 (581)
T ss_pred             HHHh
Confidence            6665

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.18  E-value=0.0018  Score=72.62  Aligned_cols=309  Identities=20%  Similarity=0.299  Sum_probs=225.9

Q ss_pred             HHHHHHHHHHHHHHHHH------HH-h----HHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhh
Q 036820          133 DFESKLQNEQEQRTKQL------KS-A----KEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKF  201 (651)
Q Consensus       133 dFEkRLKevQeeVkkLL------Kk-~----kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqA  201 (651)
                      .|-+|....+++=..|.      +. +    +..-.-+-.=+..+++.|.+..........-+..+..++..++..+.++
T Consensus        53 ~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~  132 (546)
T KOG0977|consen   53 VYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKA  132 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            46666666666655544      11 2    3334455556777888888888888888888888888888899999998


Q ss_pred             hhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhh-----hhhhhhhhhHhc
Q 036820          202 GEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQN-----ELNARASSLLVE  276 (651)
Q Consensus       202 Eedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt-----~Ln~~v~sL~~e  276 (651)
                      ...-..++.++.+-+..+.-++-+++++.-.++.-|+.+..|-...+.-..+++.+..--++-     +++.++++|.-+
T Consensus       133 ~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Llee  212 (546)
T KOG0977|consen  133 EKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEE  212 (546)
T ss_pred             HHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            888889999999999999999999999999999999999999888888888877777644443     777778877644


Q ss_pred             ccch----HHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHH
Q 036820          277 RDDS----KQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLD  352 (651)
Q Consensus       277 k~~~----~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd  352 (651)
                      -+-.    +..|.+..           .++..|..     .+-=+..+.+|..|+.|-+-....|.--|  ++++.....
T Consensus       213 l~f~~~~h~~eI~e~~-----------~~~~rd~t-----~~~r~~F~~eL~~Ai~eiRaqye~~~~~n--R~diE~~Y~  274 (546)
T KOG0977|consen  213 LAFLKRIHKQEIEEER-----------RKARRDTT-----ADNREYFKNELALAIREIRAQYEAISRQN--RKDIESWYK  274 (546)
T ss_pred             HHHHHhccHHHHHHHH-----------HHHhhccc-----ccchHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHH
Confidence            3222    23333332           23455554     11223456678888888887777665544  456666677


Q ss_pred             Hhhhhhhh--h--HHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhh
Q 036820          353 NELGNVKN--L--KYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVL  428 (651)
Q Consensus       353 ~E~~~~k~--L--~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~L  428 (651)
                      +.+.+++.  -  ....-...|-|...|+.++.|...|-++-..|..|+.+|-.|..++.+=+......|++=..     
T Consensus       275 ~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~-----  349 (546)
T KOG0977|consen  275 RKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDA-----  349 (546)
T ss_pred             HHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHH-----
Confidence            77766662  1  11222234667778899999999999999999999999999999988877777766654322     


Q ss_pred             hhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHh
Q 036820          429 AGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKA  474 (651)
Q Consensus       429 s~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~  474 (651)
                               -+.+..++++..+.||......--+|..|+ .+|.|+
T Consensus       350 ---------~i~~mReec~~l~~Elq~LlD~ki~Ld~EI-~~YRkL  385 (546)
T KOG0977|consen  350 ---------EIAKMREECQQLSVELQKLLDTKISLDAEI-AAYRKL  385 (546)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHhhchHhHHHhHH-HHHHHH
Confidence                     245667899999999999999999999997 578876

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.17  E-value=0.032  Score=65.18  Aligned_cols=129  Identities=15%  Similarity=0.268  Sum_probs=61.8

Q ss_pred             HHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhh
Q 036820          161 NKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGV  240 (651)
Q Consensus       161 DQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i  240 (651)
                      +++.+..+.+..+...+.....-.+.+...+..+.....+....++.....+..+   ++.|+.++.-.-..+......+
T Consensus       315 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~---~~~l~~~~~~~le~~~~~~~~~  391 (908)
T COG0419         315 EELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEER---LEELEKELEKALERLKQLEEAI  391 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHH
Confidence            3333333333333333333333334444444444333333333333444444444   3334444443334445566677


Q ss_pred             hhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHHHHHHHHHh
Q 036820          241 QKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKEL  294 (651)
Q Consensus       241 ~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l~key~~l  294 (651)
                      +.+...+......+.++...|....-  .+..+..+.+...+.+..+...+..+
T Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~e~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~  443 (908)
T COG0419         392 QELKEELAELSAALEEIQEELEELEK--ELEELERELEELEEEIKKLEEQINQL  443 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777776665522  33444444444444444444444443

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=98.13  E-value=0.0078  Score=68.50  Aligned_cols=273  Identities=23%  Similarity=0.274  Sum_probs=167.3

Q ss_pred             hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhH
Q 036820          265 ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEK  344 (651)
Q Consensus       265 ~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~  344 (651)
                      .|+..+..|-.+.+....++.+..++..           ..+.|..+++..|..|++.+..--.+...-.-+.+.+..++
T Consensus        84 ~Lq~E~~~L~kElE~L~~qlqaqv~~ne-----------~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk  152 (617)
T PF15070_consen   84 QLQAEAEHLRKELESLEEQLQAQVENNE-----------QLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDK  152 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence            4666677776666666666665554444           33667889999999999988876555544445677788887


Q ss_pred             HHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhh
Q 036820          345 DDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRS  424 (651)
Q Consensus       345 ~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~  424 (651)
                      .+..+.    |.--+.||+-|.-.|+..-..-|+--+|...|.--...+..|...+..++.++..+++.+..+=.++.+.
T Consensus       153 ~t~SRA----lsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~L  228 (617)
T PF15070_consen  153 ATASRA----LSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSL  228 (617)
T ss_pred             hHHHHH----HHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            777765    5566799999999999999999999999999999999999999999999999999999888775555443


Q ss_pred             hhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHh-----------hhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 036820          425 GEVLAGELFAAKEVLKKASEELQNVSHELEATAEN-----------RDSLRKELVNIYKKAEATANDLKEQKEIVSSLNK  493 (651)
Q Consensus       425 ~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~-----------rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~  493 (651)
                      ..-=    .....+|+-..    +..++|++-.|+           -|.||-+-...---+|....||.+=+.-...++.
T Consensus       229 q~q~----dq~~~~Lqqy~----a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~q  300 (617)
T PF15070_consen  229 QEQR----DQYLGHLQQYV----AAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQ  300 (617)
T ss_pred             HHHH----HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3310    11111222211    112223222221           1222222222222334555555554444444444


Q ss_pred             HHHHHHHHhh---hhHHHhHhHHHhHHHHhhhH-HHhhhhHHHHhHHH-------hhhhhccccchhHHHHHHHhHHHHH
Q 036820          494 ELQALEKQTS---KDKEARKSLETDLEEATKSL-DEMNRNALELSKNL-------EKANSQISNLEDEKAVLYKSLTEQK  562 (651)
Q Consensus       494 eL~al~~Q~~---~d~EaRk~Le~dLeeaT~Sl-dEmn~~~~~LS~~L-------e~ans~issle~eKevL~ksl~eqk  562 (651)
                      +-+-|..|+.   ...+      -|=-+ ..+. .|+.+........+       ++-|+-+.+++.|++-|...|.+|+
T Consensus       301 qNqqL~~qls~~~~~~e------g~~~~-~~~~~ee~~~~~~~ipEd~es~E~m~~f~~~a~~~~eeEr~~L~~qL~eqk  373 (617)
T PF15070_consen  301 QNQQLQAQLSLMALPGE------GDGLE-SESEEEEAPQPMPSIPEDLESREAMVEFFNSALAQAEEERARLRRQLEEQK  373 (617)
T ss_pred             hhHHHHHHHHhhcCCCC------Ccccc-cccccccccCcCcccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            4444444432   1211      11000 0011 12334444454444       3457778899999999999999998


Q ss_pred             hhhHH
Q 036820          563 SIANE  567 (651)
Q Consensus       563 ~~t~E  567 (651)
                      .-+..
T Consensus       374 ~~~q~  378 (617)
T PF15070_consen  374 VQCQH  378 (617)
T ss_pred             HHHHH
Confidence            76543

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=98.11  E-value=0.016  Score=64.74  Aligned_cols=327  Identities=20%  Similarity=0.303  Sum_probs=216.0

Q ss_pred             hhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHH
Q 036820          270 ASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRK  349 (651)
Q Consensus       270 v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~  349 (651)
                      |..|.. ..++..+...+.++|.++-.                 ..+..+++.|-.|-..+.+-+-.  .-...+.+++.
T Consensus        53 vk~l~l-~Ges~~~f~~w~~~~~~i~~-----------------~~~~~ie~~l~~ae~~~~~~~f~--~a~~~~~~~~~  112 (569)
T PRK04778         53 VKKLNL-TGQSEEKFEEWRQKWDEIVT-----------------NSLPDIEEQLFEAEELNDKFRFR--KAKHEINEIES  112 (569)
T ss_pred             HhcCCC-CcccHHHHHHHHHHHHHHHH-----------------hhhhhHHHHHHHHHHHHhcccHH--HHHHHHHHHHH
Confidence            444433 67888999999999998763                 23455566666666665555443  33456666666


Q ss_pred             HHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhh-----------hhHHHHHHHHHHHHHHHHHHHHhc-c
Q 036820          350 MLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDS-----------CADLETEISRIRAEFAEVKHTLGN-S  417 (651)
Q Consensus       350 mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~-----------~~~L~~qiskl~~E~~e~ke~l~~-~  417 (651)
                      +|+.==..++.+.+.|+.--+.=++.|.++-.|.+...+++..           ...|+.++..+..+|....+.-.. .
T Consensus       113 ~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd  192 (569)
T PRK04778        113 LLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGD  192 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            7766666777777777777777777888888887777777653           457899999999999888765543 3


Q ss_pred             hHHHHhhhhhhhhhHHhHHHHHHHh-------HHHHHhhhHHHHH----------------HHHhhhhhhHHHHHHHHHh
Q 036820          418 LDEAKRSGEVLAGELFAAKEVLKKA-------SEELQNVSHELEA----------------TAENRDSLRKELVNIYKKA  474 (651)
Q Consensus       418 l~eak~~~~~Ls~El~s~ke~l~k~-------~eeL~~~S~eL~~----------------~~e~rd~L~kEL~d~YKK~  474 (651)
                      -.+|..+-..+-.++..+..++.+.       +.++-.--.+|..                +...-+.+++.+.++...+
T Consensus       193 ~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l  272 (569)
T PRK04778        193 YVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALL  272 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence            4556666666666665555544433       2222111122211                1222223333333333333


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHHHhHHHhhhhhc----------c
Q 036820          475 EATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQ----------I  544 (651)
Q Consensus       475 E~t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~~Le~ans~----------i  544 (651)
                      ...  +|..-...+..++..+..|-.++.++-.||+..+......+..|+.+.++.--|..+++..+..          +
T Consensus       273 ~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~  350 (569)
T PRK04778        273 EEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESV  350 (569)
T ss_pred             Hhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHH
Confidence            332  5666777889999999999999999999999999999999999999999999999999988776          4


Q ss_pred             ccchhHHHHHH-------HhHHHHHhhhHHHhhchHHHHHHHHHhhhhhhhhhHhhhhhHHHHhhcccchhhhhhccccc
Q 036820          545 SNLEDEKAVLY-------KSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINSS  617 (651)
Q Consensus       545 ssle~eKevL~-------ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ERE~~e~r~kkLEeELAsAKGEiLrLR~qi~ss  617 (651)
                      ..++.+-+-+.       ..+.++...-.+.++.+++-..=+..+-.++..+......|..+-..|+-.+-++|..++..
T Consensus       351 ~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~i  430 (569)
T PRK04778        351 RQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEI  430 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555554444       44444555555566666666666666666666666666666666666666666666666554


Q ss_pred             c
Q 036820          618 K  618 (651)
Q Consensus       618 ~  618 (651)
                      +
T Consensus       431 k  431 (569)
T PRK04778        431 K  431 (569)
T ss_pred             H
Confidence            4

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=98.00  E-value=1.2e-06  Score=101.15  Aligned_cols=337  Identities=19%  Similarity=0.327  Sum_probs=0.0

Q ss_pred             hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhh---hHhHHHHHHHHHHHHHHHhHhhhchhHHHhhh
Q 036820          265 ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRL---REKKEELHQLKEKLELTLDEACENRATIAKFT  341 (651)
Q Consensus       265 ~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL---~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~  341 (651)
                      +|+..|.++...+.++++++-.+..++++++.-.+.-...=.++-   ..-..++..|.-+|+.+=+-.+.=.-....|.
T Consensus       163 dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~  242 (859)
T PF01576_consen  163 DLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLE  242 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778888888888888888888888888887655443221111111   11122233333333222222222233566788


Q ss_pred             hhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHH-
Q 036820          342 QEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDE-  420 (651)
Q Consensus       342 ~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~e-  420 (651)
                      +.++++++.|+.|.....+|.+.++..+.       ++..|.+++++-...-..|+.++++++.|+..++..+..-+.. 
T Consensus       243 ~qLeelk~~leeEtr~k~~L~~~l~~le~-------e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~  315 (859)
T PF01576_consen  243 SQLEELKRQLEEETRAKQALEKQLRQLEH-------ELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQR  315 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhhHHHHHhHhhhhhhhHHHHHHHHH-------HHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhh
Confidence            99999999999999888888877766654       5556666777777777888899999999988888776653222 


Q ss_pred             ---HHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Q 036820          421 ---AKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQA  497 (651)
Q Consensus       421 ---ak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~a  497 (651)
                         .+..=+.|...|..+.+.+.       ..-......--.+.-|+-|+-|       ..-+|-..+..+..|.+--..
T Consensus       316 ~EelEeaKKkL~~~L~el~e~le-------~~~~~~~~LeK~k~rL~~EleD-------l~~eLe~~~~~~~~LeKKqr~  381 (859)
T PF01576_consen  316 TEELEEAKKKLERKLQELQEQLE-------EANAKVSSLEKTKKRLQGELED-------LTSELEKAQAAAAELEKKQRK  381 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHh
Confidence               22222233333333222221       1111122222223334444443       455666777888888888888


Q ss_pred             HHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHHHhHHHhhhhhccccchhHHHHHHHhHHHHHhhhHHHhhchHHHHH
Q 036820          498 LEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHN  577 (651)
Q Consensus       498 l~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~~Le~ans~issle~eKevL~ksl~eqk~~t~EAqeN~eDA~n  577 (651)
                      +.+++.--+.-=..+...++.+.+-...+..-.+.|-..|+.....+..++.++..|..-|.+=.....++-.|+-+-..
T Consensus       382 fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek  461 (859)
T PF01576_consen  382 FDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEK  461 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHH
Confidence            88877766666666778888889889999999999999999999999999999999998888877777888888888888


Q ss_pred             HHHHhhhhhhhhhHhhhhhHHHHhhcccchhhhhhccccccCccC
Q 036820          578 LVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSKTLVN  622 (651)
Q Consensus       578 li~~Lg~ERE~~e~r~kkLEeELAsAKGEiLrLR~qi~ss~s~~n  622 (651)
                      .+.+|-.|++.+......+|..|-.+-+-++||=..++..+..-+
T Consensus       462 ~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~e  506 (859)
T PF01576_consen  462 AKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIE  506 (859)
T ss_dssp             ---------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888999999998899998888888877763

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.98  E-value=0.052  Score=61.33  Aligned_cols=92  Identities=35%  Similarity=0.443  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHH
Q 036820          317 HQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADL  396 (651)
Q Consensus       317 ~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L  396 (651)
                      .||.-+|..|.-.-...+   +..-+|+.++..-....=..|-+|+.+++-..+.|...|.|-..|..+|.+-++.+.  
T Consensus       335 aql~~qLad~~l~lke~~---~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~--  409 (546)
T PF07888_consen  335 AQLKLQLADASLELKEGR---SQWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNR--  409 (546)
T ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH--
Confidence            344444444433332222   455566666664343343456788889999999999999998899999988777663  


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 036820          397 ETEISRIRAEFAEVKHTL  414 (651)
Q Consensus       397 ~~qiskl~~E~~e~ke~l  414 (651)
                       -|||...-|+.|.+.+|
T Consensus       410 -vqlsE~~rel~Elks~l  426 (546)
T PF07888_consen  410 -VQLSENRRELQELKSSL  426 (546)
T ss_pred             -HHHHHHHHHHHHHHHHH
Confidence             37777777777655544

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.90  E-value=0.12  Score=61.89  Aligned_cols=433  Identities=22%  Similarity=0.324  Sum_probs=270.6

Q ss_pred             hhHHHHHhhhhhhhHh---HHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHH-------------HHh-HHH
Q 036820           93 GVLGALYALTQNEKKA---TDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQL-------------KSA-KEE  155 (651)
Q Consensus        93 Gvlg~Ly~l~q~ekka---~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLL-------------Kk~-kEe  155 (651)
                      ++|-..-++-+.|++-   +..-|+.-+.+|+++++++---...|++ +++...+..+++             -+. .++
T Consensus       315 t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~-~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~  393 (1174)
T KOG0933|consen  315 TSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEK-LKEAFQEDSKLLEKAEELVESLTAGLSSNEDE  393 (1174)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHhcccccCccc
Confidence            4444444444445443   4456677788999999999887777763 333333333333             112 234


Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhH--------------HHhhhhhHHHHHHHHHH---hhhh
Q 036820          156 QQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTS--------------LLKFGEDKRTLEEERKQ---KLDR  218 (651)
Q Consensus       156 eQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ss--------------LsqAEedkd~Ae~eLee---Kl~~  218 (651)
                      +.+|-+||.+.+.++..........+--.+-++.++......              +.+-.+.++.++..|+.   +.+.
T Consensus       394 e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~  473 (1174)
T KOG0933|consen  394 EKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQ  473 (1174)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch
Confidence            788999999999999888877776666666655555444333              33334444444444443   5566


Q ss_pred             HHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhh-------------------hHhhhhhh---------------
Q 036820          219 IEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKN-------------------LNSVYKQN---------------  264 (651)
Q Consensus       219 i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~n-------------------L~~~y~qt---------------  264 (651)
                      ++.|+.+-+-|...+-+-.+.+..|+++|+--+--|+.                   ++.....|               
T Consensus       474 ~e~l~q~~~~l~~~~~~lk~~~~~l~a~~~~~~f~Y~dP~~nfdrs~V~G~Va~Li~vkd~~~~tAle~~aGgrLynvVv  553 (1174)
T KOG0933|consen  474 EEALKQRRAKLHEDIGRLKDELDRLLARLANYEFTYQDPEPNFDRSKVKGLVAKLIKVKDRSYATALETTAGGRLYNVVV  553 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCccchHHHHHHHHHHHheeCcchHHHHHHHHhcCcceeEEe
Confidence            77777777777777777777888888887666555551                   11111122               


Q ss_pred             --------------------------------------------------------------------------------
Q 036820          265 --------------------------------------------------------------------------------  264 (651)
Q Consensus       265 --------------------------------------------------------------------------------  264 (651)
                                                                                                      
T Consensus       554 ~te~tgkqLLq~g~l~rRvTiIPLnKI~s~~~s~~v~~~ak~v~~~~v~~al~Li~yd~~l~~amefvFG~tlVc~~~d~  633 (1174)
T KOG0933|consen  554 DTEDTGKQLLQRGNLRRRVTIIPLNKIQSFVLSPNVLQAAKNVGNDNVELALSLIGYDDELKKAMEFVFGSTLVCDSLDV  633 (1174)
T ss_pred             echHHHHHHhhcccccceeEEEechhhhhccCCHhHHHHHHHhcCchHHHHHHHhcCCHHHHHHHHHHhCceEEecCHHH
Confidence                                                                                            


Q ss_pred             -------------------------------------hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhh
Q 036820          265 -------------------------------------ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAK  307 (651)
Q Consensus       265 -------------------------------------~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~  307 (651)
                                                           ++=.+++-|+    ++..+|.+++++|.++-.        -..
T Consensus       634 AKkVaf~~~i~~rsVTl~GDV~dP~GtlTGGs~~~~a~~L~~l~~l~----~~~~~~~~~q~el~~le~--------eL~  701 (1174)
T KOG0933|consen  634 AKKVAFDPKIRTRSVTLEGDVYDPSGTLTGGSRSKGADLLRQLQKLK----QAQKELRAIQKELEALER--------ELK  701 (1174)
T ss_pred             HHHhhcccccccceeeecCceeCCCCcccCCCCCCcccHHHHHHHHH----HHHHHHHHHHHHHHHHHH--------HHH
Confidence                                                 1112233332    244555566666655431        222


Q ss_pred             hhhHhHHHHHHHHHHHHHHHhHhhhchhHHH--hhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHH
Q 036820          308 RLREKKEELHQLKEKLELTLDEACENRATIA--KFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQ  385 (651)
Q Consensus       308 lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia--~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~  385 (651)
                      .|--.-...+.|+.+|...+-+..-....+.  ..-+-.+++..|+    +.|..+...|..++.++.++-.+++.|+..
T Consensus       702 ~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~----e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~  777 (1174)
T KOG0933|consen  702 SLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELL----EEVEESEQQIKEKERALKKCEDKISTLEKK  777 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444566666676666555432222211  2222334444443    346677888999999999999999999998


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHh---cchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhh
Q 036820          386 LKQSKDSCADLETEISRIRAEFAEVKHTLG---NSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDS  462 (651)
Q Consensus       386 L~~~~~~~~~L~~qiskl~~E~~e~ke~l~---~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~  462 (651)
                      ......-   =+..+-.++.|+..+++.+.   +.++..+..-+.|-.|...+..-++..+-.|+..-.++.+....-+.
T Consensus       778 ~~d~~~~---re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~  854 (1174)
T KOG0933|consen  778 MKDAKAN---RERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGN  854 (1174)
T ss_pred             HhHhhhh---hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8876543   34556666667777766654   44566667777788888888777888888888888888888888899


Q ss_pred             hhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHh-------hhhHHHhHhHHHhHHHHhhhHHHhhhhHHHHhH
Q 036820          463 LRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQT-------SKDKEARKSLETDLEEATKSLDEMNRNALELSK  535 (651)
Q Consensus       463 L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~-------~~d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~  535 (651)
                      |.-.+.++|+-......+|..+++-..-.+.++..+..-.       ..-+--|+-|+-++.       -|-+++-..++
T Consensus       855 l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~-------~~~~e~~~~~k  927 (1174)
T KOG0933|consen  855 LEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVT-------KLESEKANARK  927 (1174)
T ss_pred             HHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHH-------HhhhhHHHHHH
Confidence            9999999999999999999999999999998885443222       111223455554443       34444555555


Q ss_pred             HHhhhhhccccchhHHH
Q 036820          536 NLEKANSQISNLEDEKA  552 (651)
Q Consensus       536 ~Le~ans~issle~eKe  552 (651)
                      +++..--.+.=|.+||.
T Consensus       928 ~v~~l~~k~~wi~~ek~  944 (1174)
T KOG0933|consen  928 EVEKLLKKHEWIGDEKR  944 (1174)
T ss_pred             HHHHHHHhccchhHHHH
Confidence            55555555555555543

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.84  E-value=0.12  Score=60.02  Aligned_cols=410  Identities=20%  Similarity=0.221  Sum_probs=215.9

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhh--------------hhh
Q 036820          173 LGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELRE--------------KDD  238 (651)
Q Consensus       173 L~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~--------------Ke~  238 (651)
                      -...+.+-..++++....+...-..+.......+.+-+++.-=...++++-.++...+++..-              .|.
T Consensus       144 ~~t~~~~l~~~iee~~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~NE~l~~~~~~~~e~  223 (698)
T KOG0978|consen  144 NSTELEELRDEIEELRELASTRMEELEKLQLYSDEILRQLDRFRVELRSLKEKVRSETFELRCLQYNEELQRKTMESDEA  223 (698)
T ss_pred             chhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhcccccchhhhh
Confidence            345566666666666665665556666666666666666655555567777777777777441              111


Q ss_pred             ----hhhhhhhhhhhhHHHhhhhHhhhhhh--------hhhhhhhhhHhcccchHHHHHHHHHHHHHhhh-chhhhhhhh
Q 036820          239 ----GVQKLSSSLQQKETELKNLNSVYKQN--------ELNARASSLLVERDDSKQKLEAVQKEYKELKL-SSENETASN  305 (651)
Q Consensus       239 ----~i~~l~SsLa~KE~e~~nL~~~y~qt--------~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~-ssE~~aa~d  305 (651)
                          .+-.+...++..-.+|.+|.-.+.+.        ++|..+..|++--.+....+-....+|.+-.. .+..|+.  
T Consensus       224 ~~~~~~~~lee~~~~~~~e~~~l~~~~e~~~~~~~~~~~in~e~~~L~Ssl~e~~~~l~~~~~~~k~t~~~~~~lr~~--  301 (698)
T KOG0978|consen  224 INSKKVIKLEEKLAQCVKEYEMLRKEFENNKSQNDLFSSINREMRHLISSLQEHEKLLKEYERELKDTESDNLKLRKQ--  301 (698)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHHhHHHhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH--
Confidence                12334455666667777777766665        56666665555433333333332222222100 0011111  


Q ss_pred             hhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHH-HHHHHhhhhhhhhHHHHHhhHHHHHhhhh--hhhHH
Q 036820          306 AKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLR-KMLDNELGNVKNLKYELQITQETLETTRN--EASDL  382 (651)
Q Consensus       306 a~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r-~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~--e~s~L  382 (651)
                                ..-+.+.+..-..+-....+.|+++..+..++. ...+...+.++.+...+-   ...+.+++  ++...
T Consensus       302 ----------~~s~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~e~~k~~di~~~  368 (698)
T KOG0978|consen  302 ----------HSSAADSLESKSRDLESLLDKIQDLISQEAELSKKLRSKLLESAKKLKILLR---EKDRESQKERDILVA  368 (698)
T ss_pred             ----------HHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHhhhhHhHHHH
Confidence                      111112222222233333444445444444444 233333333333332222   12222222  11111


Q ss_pred             HHHHHH-----HHhhhhHHHHHHH----HHHHHHHHHHHHHhc------------chHHHHhhhhhhhhhHHhHHHHHHH
Q 036820          383 EKQLKQ-----SKDSCADLETEIS----RIRAEFAEVKHTLGN------------SLDEAKRSGEVLAGELFAAKEVLKK  441 (651)
Q Consensus       383 ~~~L~~-----~~~~~~~L~~qis----kl~~E~~e~ke~l~~------------~l~eak~~~~~Ls~El~s~ke~l~k  441 (651)
                      ..++-.     .-.++.-+.-++-    +...|.....+.+-.            ..+.++.    =.+++...++.|++
T Consensus       369 k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r----~~~~~~~~~e~Lqk  444 (698)
T KOG0978|consen  369 KSELLKTNELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAER----QIRQVEELSEELQK  444 (698)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH----hHHHHHHHHHHHHH
Confidence            111111     1111222222222    111222211111111            1111111    11345555666666


Q ss_pred             hHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHh-------hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHhHHH
Q 036820          442 ASEELQNVSHELEATAENRDSLRKELVNIYKKAEA-------TANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLET  514 (651)
Q Consensus       442 ~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~-------t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~Le~  514 (651)
                      ..+.....+.++.++--+.++.|.....-|--++.       .-.+...=.+++-+|-.+...|.+|+...+-+-..++.
T Consensus       445 ~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~  524 (698)
T KOG0978|consen  445 KEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLEL  524 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666665555444432221       12344445577888999999999999988877666655


Q ss_pred             hHHHHhhhHHHhhhhHHHHhHHHhhhhhccccchhHHHHHHHhHHHHHhhhHHH--------------hhchHHHHHHHH
Q 036820          515 DLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANES--------------RENMEDAHNLVM  580 (651)
Q Consensus       515 dLeeaT~SldEmn~~~~~LS~~Le~ans~issle~eKevL~ksl~eqk~~t~EA--------------qeN~eDA~nli~  580 (651)
                      +.-.              |=..+-.-.+..+++.+|...+..++...++-.+++              +.-|+|.+-.+.
T Consensus       525 ~i~~--------------leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~  590 (698)
T KOG0978|consen  525 KIGK--------------LEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYA  590 (698)
T ss_pred             HHHH--------------HHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4321              223344455667788888888888888888777665              445777778888


Q ss_pred             HhhhhhhhhhHhhhhhHHHHhhcccchhhhhhccc
Q 036820          581 RLGQERKSLDKRSKKLEEELASAKGEILRLRSQIN  615 (651)
Q Consensus       581 ~Lg~ERE~~e~r~kkLEeELAsAKGEiLrLR~qi~  615 (651)
                      -++-|.+-|-...++||||+...+|..=|+++-.+
T Consensus       591 e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~  625 (698)
T KOG0978|consen  591 ELELELEIEKFKRKRLEEELERLKRKLERLKKEES  625 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            88999999999999999999999999999988776

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.77  E-value=0.12  Score=57.93  Aligned_cols=187  Identities=20%  Similarity=0.320  Sum_probs=128.2

Q ss_pred             hHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhh-----chhHHHhhhhhHHHHHHHHHHh
Q 036820          280 SKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACE-----NRATIAKFTQEKDDLRKMLDNE  354 (651)
Q Consensus       280 ~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k-----~~~~Ia~L~~e~~~~r~mLd~E  354 (651)
                      +-.++++|..=|.+++..     -.+.+= ..-+.+++++.+++..++.....     =...+.++...++++-..|..|
T Consensus       228 ~P~ql~el~~gy~~m~~~-----gy~~~~-~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE  301 (569)
T PRK04778        228 LPDQLQELKAGYRELVEE-----GYHLDH-LDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILERE  301 (569)
T ss_pred             hhHHHHHHHHHHHHHHHc-----CCCCCC-CChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556666666666666531     111111 13578899999999987765443     3567788999999999999999


Q ss_pred             hhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhh----------hhHHHHHHHHHHHHHHHHHHHHhcchHHHHhh
Q 036820          355 LGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDS----------CADLETEISRIRAEFAEVKHTLGNSLDEAKRS  424 (651)
Q Consensus       355 ~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~----------~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~  424 (651)
                      +.+.+............|...+...-.|..+++.++..          -..++.++..+...+....+.+..+       
T Consensus       302 ~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~-------  374 (569)
T PRK04778        302 VKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQ-------  374 (569)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------
Confidence            99999999999999999999999999999999999887          4455555555555554443332222       


Q ss_pred             hhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHH
Q 036820          425 GEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKE  483 (651)
Q Consensus       425 ~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~  483 (651)
                          ......+++.+....+.+...-.+-....+.-.+|.++-.++=++++.-...|..
T Consensus       375 ----~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~  429 (569)
T PRK04778        375 ----EIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHE  429 (569)
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                2224455666666666666666666666666667777777666666655555443

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.76  E-value=2e-05  Score=89.17  Aligned_cols=142  Identities=20%  Similarity=0.263  Sum_probs=0.0

Q ss_pred             hhhhhhHhHHHHHHHHHHHHHH---HhHhhhchhHHHhhhhhHHHHHHHHHH---hhhhhhhhHHHHHhhHHHHHhhhhh
Q 036820          305 NAKRLREKKEELHQLKEKLELT---LDEACENRATIAKFTQEKDDLRKMLDN---ELGNVKNLKYELQITQETLETTRNE  378 (651)
Q Consensus       305 da~lL~eke~~l~qLeekl~~A---l~e~~k~~~~Ia~L~~e~~~~r~mLd~---E~~~~k~L~~~lq~Tqe~L~~sR~e  378 (651)
                      +.+||.|.   .+.|+-+|..+   -.+...=++-+..|-.++.....++.+   ++.....+...|-..+-.-....++
T Consensus       282 n~elLeEe---~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek  358 (722)
T PF05557_consen  282 NVELLEEE---KRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEK  358 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            35555443   34444444432   223333344455556666666665555   3333333433333333333333445


Q ss_pred             hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc---chHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhh
Q 036820          379 ASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGN---SLDEAKRSGEVLAGELFAAKEVLKKASEELQNV  449 (651)
Q Consensus       379 ~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~---~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~  449 (651)
                      ...+.-++.+....|..|+.++..+..++.+.+..+..   .+...++---.+..|...+|.+|+---.|...+
T Consensus       359 ~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~  432 (722)
T PF05557_consen  359 LGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTM  432 (722)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            55555566666666666666666666666665554322   222333344455667777777776655554443

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=97.66  E-value=0.082  Score=55.90  Aligned_cols=206  Identities=20%  Similarity=0.322  Sum_probs=136.4

Q ss_pred             hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhc---hhHHHhhh
Q 036820          265 ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACEN---RATIAKFT  341 (651)
Q Consensus       265 ~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~---~~~Ia~L~  341 (651)
                      .+|.+|+.|-..+++...+++.|.++|..++-.+.... .----+...+..+.+|+-++.+.-=.-..-   --.|++|.
T Consensus        66 eineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~-~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~  144 (294)
T COG1340          66 EINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFN-LGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELR  144 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999998877552 222334667788889988887753333332   33478888


Q ss_pred             hhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHH
Q 036820          342 QEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEA  421 (651)
Q Consensus       342 ~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~ea  421 (651)
                      +++++-+.+++ .-..++.|..++..-.....+.++++-.|+.+.++.-.--..+-..+-.+..+..++.+-+......+
T Consensus       145 k~le~~~k~~e-~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~  223 (294)
T COG1340         145 KELEDAKKALE-ENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKI  223 (294)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88888888775 34456667777777777777888888888888777666666666666666666666666555444443


Q ss_pred             HhhhhhhhhhHHhHHHHHHHhHHHHHhhh--HHHHHHHHhhhhhhHHHHHHHHHhHh
Q 036820          422 KRSGEVLAGELFAAKEVLKKASEELQNVS--HELEATAENRDSLRKELVNIYKKAEA  476 (651)
Q Consensus       422 k~~~~~Ls~El~s~ke~l~k~~eeL~~~S--~eL~~~~e~rd~L~kEL~d~YKK~E~  476 (651)
                      ...    ..|+..++.=++.....+...=  .--+...+.++.++.-..++|.||.-
T Consensus       224 ~e~----~ee~~~~~~elre~~k~ik~l~~~~~~~~~~~~~ee~kera~ei~EKfk~  276 (294)
T COG1340         224 DEL----HEEFRNLQNELRELEKKIKALRAKEKAAKRREKREELKERAEEIYEKFKR  276 (294)
T ss_pred             HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            333    3333333333332222222111  11134566777888888888888863

>PRK11637 AmiB activator; Provisional

Probab=97.63  E-value=0.03  Score=60.09  Aligned_cols=15  Identities=20%  Similarity=0.302  Sum_probs=6.6

Q ss_pred             hhhhhhHhHHHHHHH
Q 036820          305 NAKRLREKKEELHQL  319 (651)
Q Consensus       305 da~lL~eke~~l~qL  319 (651)
                      |..++.+-.+..++|
T Consensus       168 d~~~l~~l~~~~~~L  182 (428)
T PRK11637        168 RQETIAELKQTREEL  182 (428)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555544444333333

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=97.62  E-value=0.26  Score=57.84  Aligned_cols=120  Identities=26%  Similarity=0.353  Sum_probs=64.7

Q ss_pred             hhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHH
Q 036820          269 RASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLR  348 (651)
Q Consensus       269 ~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r  348 (651)
                      .+.++.........++..+..++.+|.......+....+...+.+..+.+++..+..++.........|..+..++..+.
T Consensus       323 ~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~  402 (908)
T COG0419         323 KLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELS  402 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444455555666666666666666666666666666666666666666666555555555555555555555555


Q ss_pred             HHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHH
Q 036820          349 KMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQ  388 (651)
Q Consensus       349 ~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~  388 (651)
                      ..++.=...+..+...+...+..|..-+...-.+...+..
T Consensus       403 ~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~  442 (908)
T COG0419         403 AALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQ  442 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5554444444444444444444444444444444444333

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.61  E-value=0.02  Score=57.30  Aligned_cols=213  Identities=18%  Similarity=0.270  Sum_probs=111.8

Q ss_pred             HHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhh
Q 036820          188 RIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELN  267 (651)
Q Consensus       188 k~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln  267 (651)
                      ...++.+...+..+...++.+...+..--..+..|+.||.+|-.++..-+.++......|...+.........+      
T Consensus         7 ~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~------   80 (237)
T PF00261_consen    7 KDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERAR------   80 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHH------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            33444444444444444444444444444556667777777777777777766666666666555544332222      


Q ss_pred             hhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHH
Q 036820          268 ARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDL  347 (651)
Q Consensus       268 ~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~  347 (651)
                         ..|-.--.....+|+.|..+..+.+...+.-   |.++ .+-...|+.++..|..|-.-+..-...|.+|..++...
T Consensus        81 ---k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~---e~k~-~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~  153 (237)
T PF00261_consen   81 ---KVLENREQSDEERIEELEQQLKEAKRRAEEA---ERKY-EEVERKLKVLEQELERAEERAEAAESKIKELEEELKSV  153 (237)
T ss_dssp             ---HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---HHHH-HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHH
Confidence               1222222233444444444444444433321   1111 34445566666666666666666666666666666655


Q ss_pred             HHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 036820          348 RKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHT  413 (651)
Q Consensus       348 r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~  413 (651)
                      ..-|..==.......+-...-++.+......+...+...+.+-+.|..|+.+|..|.+++...+.-
T Consensus       154 ~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~  219 (237)
T PF00261_consen  154 GNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEK  219 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            554443222233334444445555555555555566666666666666666666666666655543

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.60  E-value=0.35  Score=58.73  Aligned_cols=70  Identities=19%  Similarity=0.320  Sum_probs=31.8

Q ss_pred             HHHHHHHHhHHHhhhhhHHHHHHHHHHh----hhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhh
Q 036820          188 RIEIDSLQTSLLKFGEDKRTLEEERKQK----LDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNL  257 (651)
Q Consensus       188 k~eIeql~ssLsqAEedkd~Ae~eLeeK----l~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL  257 (651)
                      +..++.+...+...+..++.++.+-..=    +..+....++.-.+..++..+...+.-|.+.-..-+..|..+
T Consensus       312 ~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~  385 (1201)
T PF12128_consen  312 NKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKL  385 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444433221    222233333334445555555555555555555555555443

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.54  E-value=0.041  Score=55.14  Aligned_cols=25  Identities=44%  Similarity=0.464  Sum_probs=10.7

Q ss_pred             hhhhHHhHHHHHHHhHHHHHhhhHH
Q 036820          428 LAGELFAAKEVLKKASEELQNVSHE  452 (651)
Q Consensus       428 Ls~El~s~ke~l~k~~eeL~~~S~e  452 (651)
                      |-++|...|+-.+.++.+|+.|-++
T Consensus       209 le~eL~~~k~~~~~~~~eld~~l~e  233 (237)
T PF00261_consen  209 LEDELEKEKEKYKKVQEELDQTLNE  233 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.50  E-value=0.03  Score=60.71  Aligned_cols=179  Identities=16%  Similarity=0.251  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-----HHhcch
Q 036820          344 KDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKH-----TLGNSL  418 (651)
Q Consensus       344 ~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke-----~l~~~l  418 (651)
                      .+++++.++.-+...+.+..++...++.+.+.++++.++.+.|+.+...-.+++.++..+..+.+-.+.     +..+.+
T Consensus       215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~  294 (562)
T PHA02562        215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQI  294 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcC
Confidence            556666666777777888888888899999999999999999988888888888888887777665531     011222


Q ss_pred             HHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhH---HHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 036820          419 DEAKRSGEVLAGELFAAKEVLKKASEELQNVSH---ELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKEL  495 (651)
Q Consensus       419 ~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~---eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL  495 (651)
                      +..       -+.++.+.+.+..-+.++.....   ++.......+.+++.+-+...++......+..-+.-...|..++
T Consensus       295 ~~~-------~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei  367 (562)
T PHA02562        295 SEG-------PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAI  367 (562)
T ss_pred             CCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            221       23344444443333333333333   33355555666666666666666666666555445555666777


Q ss_pred             HHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhh
Q 036820          496 QALEKQTSKDKEARKSLETDLEEATKSLDEMNRN  529 (651)
Q Consensus       496 ~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~  529 (651)
                      +.|+.......+--+.|+.+|+++..-..++.+.
T Consensus       368 ~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke  401 (562)
T PHA02562        368 EELQAEFVDNAEELAKLQDELDKIVKTKSELVKE  401 (562)
T ss_pred             HHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777665444444445555555555444444433

>PRK11637 AmiB activator; Provisional

Probab=97.45  E-value=0.042  Score=59.00  Aligned_cols=33  Identities=33%  Similarity=0.440  Sum_probs=14.8

Q ss_pred             HHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhh
Q 036820          345 DDLRKMLDNELGNVKNLKYELQITQETLETTRN  377 (651)
Q Consensus       345 ~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~  377 (651)
                      .+.++-|+.+......+..+++..+..|...+.
T Consensus       183 ~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~  215 (428)
T PRK11637        183 AAQKAELEEKQSQQKTLLYEQQAQQQKLEQARN  215 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444333

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=97.44  E-value=0.33  Score=54.59  Aligned_cols=270  Identities=22%  Similarity=0.342  Sum_probs=163.1

Q ss_pred             HHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhh-------hHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhH
Q 036820          186 ELRIEIDSLQTSLLKFGEDKRTLEEERKQKLD-------RIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLN  258 (651)
Q Consensus       186 dlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~-------~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~  258 (651)
                      .++..+..++..+..++.+++.+...|.+=++       .|+.|.++..-+...+-+.-.   .+..++..-|..+.++-
T Consensus        98 ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~---~~G~a~~~Le~~L~~ie  174 (560)
T PF06160_consen   98 KAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSF---SYGPAIEELEKQLENIE  174 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhchhHHHHHHHHHHHH
Confidence            34445555555555555555555555554443       455555555555555544322   34455556666666666


Q ss_pred             hhhhhh------------------------hhhh---hhhhhHhc-ccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhh
Q 036820          259 SVYKQN------------------------ELNA---RASSLLVE-RDDSKQKLEAVQKEYKELKLSSENETASNAKRLR  310 (651)
Q Consensus       259 ~~y~qt------------------------~Ln~---~v~sL~~e-k~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~  310 (651)
                      ..|++-                        .|..   +|-.|+.. ++..-.+|++|..-|..++..-     ...+= .
T Consensus       175 ~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~g-----y~l~~-~  248 (560)
T PF06160_consen  175 EEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEG-----YYLEH-L  248 (560)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-----CCCCC-C
Confidence            666654                        2222   24455555 6778888888888888876532     11111 2


Q ss_pred             HhHHHHHHHHHHHHHHHhHhh-----hchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHH
Q 036820          311 EKKEELHQLKEKLELTLDEAC-----ENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQ  385 (651)
Q Consensus       311 eke~~l~qLeekl~~Al~e~~-----k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~  385 (651)
                      .-+.+++++++++..++..-.     .=...+.++..+.+.+-.+|..|+.+.+.....+....+.|...++....|..+
T Consensus       249 ~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e  328 (560)
T PF06160_consen  249 DIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEE  328 (560)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            346778888888887776543     334567788889999999999999999999999999999999999999999999


Q ss_pred             HHHHHhh----------hhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHH
Q 036820          386 LKQSKDS----------CADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEA  455 (651)
Q Consensus       386 L~~~~~~----------~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~  455 (651)
                      ++.++.+          -..+..+|..+...+....+.+    .+-..+--.+..++....+.|.       ....+...
T Consensus       329 ~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i----~~~~~~yS~i~~~l~~~~~~l~-------~ie~~q~~  397 (560)
T PF06160_consen  329 LERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERI----EEQQVPYSEIQEELEEIEEQLE-------EIEEEQEE  397 (560)
T ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCCcCHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence            9888754          2344555555555554444433    3334444344444444444433       33333344


Q ss_pred             HHHhhhhhhHHHHHHHHHhH
Q 036820          456 TAENRDSLRKELVNIYKKAE  475 (651)
Q Consensus       456 ~~e~rd~L~kEL~d~YKK~E  475 (651)
                      ..+.-++|.++=.+|=+++.
T Consensus       398 ~~~~l~~L~~dE~~Ar~~l~  417 (560)
T PF06160_consen  398 INESLQSLRKDEKEAREKLQ  417 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444433333

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=97.44  E-value=0.35  Score=54.83  Aligned_cols=290  Identities=17%  Similarity=0.235  Sum_probs=142.3

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhh
Q 036820          157 QLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREK  236 (651)
Q Consensus       157 QSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~K  236 (651)
                      ..+..++..+...+..+..+.......+..+..+++.+...+...+..+...-+.+.+.   .+.|..++..+..+++..
T Consensus       205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~---r~~Le~ei~~le~e~~e~  281 (650)
T TIGR03185       205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEE---REQLERQLKEIEAARKAN  281 (650)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH---HHHHHHHHHHHHHHHHHH
Confidence            44556666666666666666666666666666666666666665555444444433332   344555666666666666


Q ss_pred             hhhhhhhhhhh-----hhh---------HHHhhhhHhhhhhhhhhhhhhhhHhcc---cchHHHHHHHHHHHHH-hhh-c
Q 036820          237 DDGVQKLSSSL-----QQK---------ETELKNLNSVYKQNELNARASSLLVER---DDSKQKLEAVQKEYKE-LKL-S  297 (651)
Q Consensus       237 e~~i~~l~SsL-----a~K---------E~e~~nL~~~y~qt~Ln~~v~sL~~ek---~~~~~k~~~l~key~~-lk~-s  297 (651)
                      +..+.++-+..     +.+         +.+...-..-+.+..|+.+..-|+..-   ..-...+..|...... ..+ .
T Consensus       282 ~~~l~~l~~~~~p~~l~~~ll~~~~~q~~~e~~~~~~~~~~~~l~~~~~~i~~~~~~l~~~~~~~~~l~~~l~~~~~~~~  361 (650)
T TIGR03185       282 RAQLRELAADPLPLLLIPNLLDSTKAQLQKEEQSQQNQLTQEELEERDKELLESLPKLALPAEHVKEIAAELAEIDKPAT  361 (650)
T ss_pred             HHHHHHHhcccCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhccccc
Confidence            66665544221     111         111110011111124444433333211   1111223333332221 110 1


Q ss_pred             hhhhhhhhhhhhhHhHHHHHHHHH---HHH-HHHhHhhhchhHHHhhhhhHHHHHHHHHH--hhhhhhhhHHHHHhhHHH
Q 036820          298 SENETASNAKRLREKKEELHQLKE---KLE-LTLDEACENRATIAKFTQEKDDLRKMLDN--ELGNVKNLKYELQITQET  371 (651)
Q Consensus       298 sE~~aa~da~lL~eke~~l~qLee---kl~-~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~--E~~~~k~L~~~lq~Tqe~  371 (651)
                      .+..--+|+     -..++.++..   .+. ...+...+-...|..+..+++.+.+.|..  .-+.++.+...+...+..
T Consensus       362 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~  436 (650)
T TIGR03185       362 TDSEIPHRL-----SGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNE  436 (650)
T ss_pred             ccccccccC-----CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence            111111222     2232333332   222 34456666777788888888888888853  224666666666666666


Q ss_pred             HHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhH
Q 036820          372 LETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSH  451 (651)
Q Consensus       372 L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~  451 (651)
                      +.....+...+..++...+.....++.++.+++...... ..+.+.++-++.+           +++|.+-+..      
T Consensus       437 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----------~~~l~~~~~~------  498 (650)
T TIGR03185       437 LFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQKINA-FELERAITIADKA-----------KKTLKEFREK------  498 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHH-----------HHHHHHHHHH------
Confidence            666666666666666665555555555555544433332 2223333333333           3333322222      


Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHhH
Q 036820          452 ELEATAENRDSLRKELVNIYKKAE  475 (651)
Q Consensus       452 eL~~~~e~rd~L~kEL~d~YKK~E  475 (651)
                         ..-..+..|.+++.++|+++=
T Consensus       499 ---l~~~~~~~le~~~~~~f~~l~  519 (650)
T TIGR03185       499 ---LLERKLQQLEEEITKSFKKLM  519 (650)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHh
Confidence               223456677777777777763

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.37  E-value=0.33  Score=52.87  Aligned_cols=19  Identities=5%  Similarity=0.062  Sum_probs=11.5

Q ss_pred             CchhhHHHHHhhhhhhhHh
Q 036820           90 PRSGVLGALYALTQNEKKA  108 (651)
Q Consensus        90 p~sGvlg~Ly~l~q~ekka  108 (651)
                      |+.|-+..+|.+...++..
T Consensus       136 l~q~~f~~f~~~~~~er~~  154 (562)
T PHA02562        136 LGTAGYVPFMQLSAPARRK  154 (562)
T ss_pred             eccCchhhHhcCChHhHHH
Confidence            4566666666666666543

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=97.34  E-value=0.6  Score=55.33  Aligned_cols=338  Identities=20%  Similarity=0.257  Sum_probs=172.1

Q ss_pred             HHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhh------------hhhhhhhhhHhcccchHHHHHH
Q 036820          219 IEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQN------------ELNARASSLLVERDDSKQKLEA  286 (651)
Q Consensus       219 i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt------------~Ln~~v~sL~~ek~~~~~k~~~  286 (651)
                      --++..-+|||-.+++.++-.|+.|--++..-|.+.+.|+.+-.--            ++|+++--|.   ++.--+-++
T Consensus        87 triyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le---~eLsAk~~e  163 (1265)
T KOG0976|consen   87 TRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLE---DELSAKAHD  163 (1265)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHHhhhhHH
Confidence            3456667788888888888888888888888888887777654321            4444433322   333344555


Q ss_pred             HHHHHHHhhhchhhhhhhhhh---hhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHH
Q 036820          287 VQKEYKELKLSSENETASNAK---RLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKY  363 (651)
Q Consensus       287 l~key~~lk~ssE~~aa~da~---lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~  363 (651)
                      |+--+.+|+-+-+.=.....+   +|.+--.+-++|++++..-=.+...|..+.-++++.-...+.+|..+    ..|. 
T Consensus       164 If~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev----~QLs-  238 (1265)
T KOG0976|consen  164 IFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEV----MQLS-  238 (1265)
T ss_pred             HHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH----HHHH-
Confidence            555555555444333322222   12333333344444444433333444444444444444444444322    1222 


Q ss_pred             HHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhH
Q 036820          364 ELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKAS  443 (651)
Q Consensus       364 ~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~  443 (651)
                         +-.++|+..|..++.|.++-.-...++..++..                  .-+-|....+|.+|+-.--++++-.|
T Consensus       239 ---s~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~------------------m~qlk~kns~L~~ElSqkeelVk~~q  297 (1265)
T KOG0976|consen  239 ---SQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEK------------------MRQLKAKNSVLGDELSQKEELVKELQ  297 (1265)
T ss_pred             ---HhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence               223355555555555555554444444433322                  22345556678888888888888888


Q ss_pred             HHHHhhh----HHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHH
Q 036820          444 EELQNVS----HELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEA  519 (651)
Q Consensus       444 eeL~~~S----~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~Le~dLeea  519 (651)
                      ++|+..-    .-+....+++.-|--|-...-.-.=.-..+|++.|.-+-.+..-++.|+|+--           ++..-
T Consensus       298 eeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd-----------~al~d  366 (1265)
T KOG0976|consen  298 EELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRD-----------MALMD  366 (1265)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-----------HHHHh
Confidence            8887532    22223333333332222111111112346777777777788888888887632           22233


Q ss_pred             hhhHHHhhhhHHHH-----------hHHHhhhhhccccchhHHHHHHHhHHHHHhhhHHHhhchHHHHHHHHHhhhhhhh
Q 036820          520 TKSLDEMNRNALEL-----------SKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKS  588 (651)
Q Consensus       520 T~SldEmn~~~~~L-----------S~~Le~ans~issle~eKevL~ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ERE~  588 (651)
                      .+|+-|.-+|.-.+           -...+...+||-.++.    +.+--.--||-       +-.|..=.-.+|++|--
T Consensus       367 vr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~----~~~dhe~~kne-------L~~a~ekld~mgthl~m  435 (1265)
T KOG0976|consen  367 VRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQ----GKKDHEAAKNE-------LQEALEKLDLMGTHLSM  435 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh----ccchhHHHHHH-------HHHHHHHHHHHhHHHHH
Confidence            34444444433222           1222333444444321    11111122222       33344445567888887


Q ss_pred             hhHhhhhhHHHHhhcccch
Q 036820          589 LDKRSKKLEEELASAKGEI  607 (651)
Q Consensus       589 ~e~r~kkLEeELAsAKGEi  607 (651)
                      ++...-.+--=-.+|+|-+
T Consensus       436 ad~Q~s~fk~Lke~aegsr  454 (1265)
T KOG0976|consen  436 ADYQLSNFKVLKEHAEGSR  454 (1265)
T ss_pred             HHHHHhhHHHHHHhhhhhH
Confidence            7777666655555666643

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.32  E-value=0.24  Score=50.40  Aligned_cols=240  Identities=19%  Similarity=0.302  Sum_probs=106.7

Q ss_pred             HHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhh
Q 036820          161 NKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGV  240 (651)
Q Consensus       161 DQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i  240 (651)
                      .+|+.+...-..+.-++.+...-+++++.+.+........++..+..++..+.+---....|+.+|--|..++.-.... 
T Consensus        61 ~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~-  139 (312)
T PF00038_consen   61 RQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQN-  139 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhh-
Confidence            3344444444444455556666666666666666666666666677777776666555555666665555555433211 


Q ss_pred             hhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHH
Q 036820          241 QKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLK  320 (651)
Q Consensus       241 ~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLe  320 (651)
                               -+.++..|..... +.....+..  .-..+....|..|..+|...-.  ..+.-.+           ....
T Consensus       140 ---------heeEi~~L~~~~~-~~~~~e~~~--~~~~dL~~~L~eiR~~ye~~~~--~~~~e~e-----------~~y~  194 (312)
T PF00038_consen  140 ---------HEEEIEELREQIQ-SSVTVEVDQ--FRSSDLSAALREIRAQYEEIAQ--KNREELE-----------EWYQ  194 (312)
T ss_dssp             ---------HHHHHHTTSTT-------------------HHHHHHHHHHHHHHHHH--HHHHHHH-----------HHHH
T ss_pred             ---------hhhhhhhhhhccc-cccceeecc--cccccchhhhhhHHHHHHHHHh--hhhhhhh-----------hhcc
Confidence                     1122222222111 111111111  2233455666667777754321  1121111           1111


Q ss_pred             HHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHH----hhhhHH
Q 036820          321 EKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSK----DSCADL  396 (651)
Q Consensus       321 ekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~----~~~~~L  396 (651)
                      .++...-..+..+...+..+..|..              .++..++..+.-|...++....|+.++.+..    .-..++
T Consensus       195 ~k~~~l~~~~~~~~~~~~~~~~E~~--------------~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~  260 (312)
T PF00038_consen  195 SKLEELRQQSEKSSEELESAKEELK--------------ELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEY  260 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccchhHhHHH--------------HHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHH
Confidence            2222222222222222223333322              2333333334444444444444444444332    223345


Q ss_pred             HHHHHHHHHHHHHHHHHHhcchHHHHhh---hhhhhhhHHhHHHHHH
Q 036820          397 ETEISRIRAEFAEVKHTLGNSLDEAKRS---GEVLAGELFAAKEVLK  440 (651)
Q Consensus       397 ~~qiskl~~E~~e~ke~l~~~l~eak~~---~~~Ls~El~s~ke~l~  440 (651)
                      ...|..+..|+.+++..++..+.+-...   =-.|--|+++-+-+|.
T Consensus       261 ~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~LLE  307 (312)
T PF00038_consen  261 QAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRKLLE  307 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence            5566666666666666666655444332   2356677777777664

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.16  E-value=0.98  Score=54.14  Aligned_cols=323  Identities=19%  Similarity=0.260  Sum_probs=175.2

Q ss_pred             HHHHHHHHHhhhhHHHHHhhHH-HHHHHHHHHHHH-HHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 036820          111 ATLEYMKARLKEKEAAIVSLEK-DFESKLQNEQEQ-RTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELR  188 (651)
Q Consensus       111 ~tiesm~~kL~e~Eaa~~~lDe-dFEkRLKevQee-VkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk  188 (651)
                      .|=..+.+++++-..-+..++. --|++.+-.+=+ ++.++.+.++...-+|.|..++.+.|..-+++...+.++-+..+
T Consensus       224 kte~eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k  303 (1243)
T KOG0971|consen  224 KTEEELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYK  303 (1243)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555444444332 123333333323 44445778999999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhh------hhhhhhhhHHHhhhhHhhhh
Q 036820          189 IEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQK------LSSSLQQKETELKNLNSVYK  262 (651)
Q Consensus       189 ~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~------l~SsLa~KE~e~~nL~~~y~  262 (651)
                      .......+++.-+-=||+.|+..-+-==..++.|++||.-|+.++.=-...+++      .-|+-..|..|.+|-..--.
T Consensus       304 ~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKda  383 (1243)
T KOG0971|consen  304 EEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDA  383 (1243)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHH
Confidence            999999999998888888887665544455667777777666665432222222      12334455555544322110


Q ss_pred             hh---hhhhhhhhhHhcccchHHHHHHHHHH-------HHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhh
Q 036820          263 QN---ELNARASSLLVERDDSKQKLEAVQKE-------YKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACE  332 (651)
Q Consensus       263 qt---~Ln~~v~sL~~ek~~~~~k~~~l~ke-------y~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k  332 (651)
                      --   |||+.          .+...--++|+       .++|+..-|.=    +.-+.+-+..|--|.||.+.||.. -.
T Consensus       384 lVrLRDlsA~----------ek~d~qK~~kelE~k~sE~~eL~r~kE~L----sr~~d~aEs~iadlkEQVDAAlGA-E~  448 (1243)
T KOG0971|consen  384 LVRLRDLSAS----------EKQDHQKLQKELEKKNSELEELRRQKERL----SRELDQAESTIADLKEQVDAALGA-EE  448 (1243)
T ss_pred             HHHHHhcchH----------HHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhcH-HH
Confidence            00   33322          00111111111       11222111110    000122233344555555555542 11


Q ss_pred             chhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 036820          333 NRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKH  412 (651)
Q Consensus       333 ~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke  412 (651)
                      =-.-.+|.|=++++--+.|+.+|...--|                  -++-+||-++   |+.|++.+-+=.+-.+-.+.
T Consensus       449 MV~qLtdknlnlEekVklLeetv~dlEal------------------ee~~EQL~Es---n~ele~DLreEld~~~g~~k  507 (1243)
T KOG0971|consen  449 MVEQLTDKNLNLEEKVKLLEETVGDLEAL------------------EEMNEQLQES---NRELELDLREELDMAKGARK  507 (1243)
T ss_pred             HHHHHHhhccCHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHH---HHHHHHHHHHHHHHHhhHHH
Confidence            12234445555555444444444332222                  1233333333   34444443333333334445


Q ss_pred             HHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHh---hhhhhHHHHH
Q 036820          413 TLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAEN---RDSLRKELVN  469 (651)
Q Consensus       413 ~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~---rd~L~kEL~d  469 (651)
                      -|++.++.|--..--..-=+...||++.+-|+.|+-..++-.+..+.   .++++.|-.|
T Consensus       508 el~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Sseees~q~~s~~~et~d  567 (1243)
T KOG0971|consen  508 ELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSEEESQQPPSVDPETFD  567 (1243)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCchhhhH
Confidence            55555555555555566678888999999999998888776555443   4566666665

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.09  E-value=1.5  Score=55.06  Aligned_cols=205  Identities=9%  Similarity=0.120  Sum_probs=132.5

Q ss_pred             CchhhHHHHHhhhhhhhHhHHHHHHHHHHHhhhhHHHHH-------hhH---HHHHHHHHHHHHHHHHHHHH--hHHHhH
Q 036820           90 PRSGVLGALYALTQNEKKATDATLEYMKARLKEKEAAIV-------SLE---KDFESKLQNEQEQRTKQLKS--AKEEQQ  157 (651)
Q Consensus        90 p~sGvlg~Ly~l~q~ekka~~~tiesm~~kL~e~Eaa~~-------~lD---edFEkRLKevQeeVkkLLKk--~kEeeQ  157 (651)
                      |+.|.++|=|.-..+|.-.+-.-+.-...++++-+.-+.       -++   .+-+.++...+.+..+..+.  ....-.
T Consensus       265 ~~~~~~aad~~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~l  344 (1486)
T PRK04863        265 ESTNYVAADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTAL  344 (1486)
T ss_pred             hhhhhhHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            488999999987777766544444333333222222221       111   22333333333333333321  111112


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhh
Q 036820          158 LLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKD  237 (651)
Q Consensus       158 SLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke  237 (651)
                      .+...+.....++..+...+......++.+..++......+..++..++.++.++.+.-..++.+|.++.-+.+.+...+
T Consensus       345 r~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le  424 (1486)
T PRK04863        345 RQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALE  424 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23456667777888888888888888888888888888888888888889988998888899999999999988886544


Q ss_pred             hhhhhhhh--hhhhhHHHhhhhHhhhhhh--hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhc
Q 036820          238 DGVQKLSS--SLQQKETELKNLNSVYKQN--ELNARASSLLVERDDSKQKLEAVQKEYKELKLS  297 (651)
Q Consensus       238 ~~i~~l~S--sLa~KE~e~~nL~~~y~qt--~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~s  297 (651)
                       .++.+..  .|+-.+  +++...-|.++  ++..++..+-...+.++..++.+.+.|+.+-..
T Consensus       425 -~~~~~~~~~~~SdEe--Le~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~  485 (1486)
T PRK04863        425 -RAKQLCGLPDLTADN--AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKI  485 (1486)
T ss_pred             -HHHHHhCCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             5666663  666555  44555555555  666667777777777777777777777776543

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=97.06  E-value=1.4  Score=54.16  Aligned_cols=48  Identities=23%  Similarity=0.240  Sum_probs=23.8

Q ss_pred             HHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHH
Q 036820          336 TIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLE  383 (651)
Q Consensus       336 ~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~  383 (651)
                      .-+.+..+.+..+++-..=.+.+..++..+.+.++++..---+.-++.
T Consensus       603 ~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~  650 (1317)
T KOG0612|consen  603 ENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVE  650 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHH
Confidence            334455555555555555455555555555555555444443433333

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.01  E-value=0.00032  Score=79.56  Aligned_cols=103  Identities=16%  Similarity=0.277  Sum_probs=0.0

Q ss_pred             hHhHHHHHHHHHHHHHHHhHhhhchhHHHhhh--hhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHH
Q 036820          310 REKKEELHQLKEKLELTLDEACENRATIAKFT--QEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLK  387 (651)
Q Consensus       310 ~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~--~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~  387 (651)
                      .+.+..+.+|+..+...-+++.-.+..-..++  .+++..-+-+-.|+...+....-++..+|-.....+.+..+    +
T Consensus       226 ~e~e~~i~~Le~el~~~~~~~~i~k~l~~ql~~i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~----E  301 (722)
T PF05557_consen  226 AEAEQKIKELEAELKDQESDAEINKELKEQLAHIRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLERL----E  301 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----H
Confidence            34555666666665544333211111111110  12222223334566555555555666666666555555443    3


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 036820          388 QSKDSCADLETEISRIRAEFAEVKHTLGN  416 (651)
Q Consensus       388 ~~~~~~~~L~~qiskl~~E~~e~ke~l~~  416 (651)
                      .++.-...|+.++.+|.+|+....-.++.
T Consensus       302 ~~~~el~~lq~e~~~Le~el~sW~sl~~~  330 (722)
T PF05557_consen  302 ELEEELAELQLENEKLEDELNSWESLLQD  330 (722)
T ss_dssp             -----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44455567777888888888776665554

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=96.97  E-value=0.47  Score=57.32  Aligned_cols=219  Identities=22%  Similarity=0.373  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHH------------HHhhhhHHHHHHHHHHHHHHHHH
Q 036820          344 KDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQ------------SKDSCADLETEISRIRAEFAEVK  411 (651)
Q Consensus       344 ~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~------------~~~~~~~L~~qiskl~~E~~e~k  411 (651)
                      ++..++.++.=.+.+++++-.+.--++-+...+ .++++.+.|.+            ..+-|..++-.|.+.+....+++
T Consensus       223 ~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~-~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~  301 (1074)
T KOG0250|consen  223 LDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLE-QLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQ  301 (1074)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555566555666666666666555555443 34444444433            33445555556666555544433


Q ss_pred             HHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHH
Q 036820          412 HTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSL  491 (651)
Q Consensus       412 e~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tL  491 (651)
                          .++++...--..+-+=++++...+....++-.++.-++...-+.-|.+..|..|+=-+.-..              
T Consensus       302 ----~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~--------------  363 (1074)
T KOG0250|consen  302 ----EKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREI--------------  363 (1074)
T ss_pred             ----HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence                33444333333344445555555555555555555555555444444444433332111111              


Q ss_pred             HHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHHHhHHH-hhhhhccccchhHHHHHHHhHHHHHhhhHHHhh
Q 036820          492 NKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNL-EKANSQISNLEDEKAVLYKSLTEQKSIANESRE  570 (651)
Q Consensus       492 n~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~~L-e~ans~issle~eKevL~ksl~eqk~~t~EAqe  570 (651)
                                           +.+..+..+..|.+++-.--+=+++ ...++..+-++++-++|.+              
T Consensus       364 ---------------------~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~--------------  408 (1074)
T KOG0250|consen  364 ---------------------ENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKK--------------  408 (1074)
T ss_pred             ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--------------
Confidence                                 1122222222222222222222222 3445555566666666654              


Q ss_pred             chHHHHHHHHHhhhhhhhhhHhhhhhHHHHhhcccchhhhhhcccc
Q 036820          571 NMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINS  616 (651)
Q Consensus       571 N~eDA~nli~~Lg~ERE~~e~r~kkLEeELAsAKGEiLrLR~qi~s  616 (651)
                      -+|+.++.+.+|+.|++-+-...+.-++|+-.-+|+|+-||++|.-
T Consensus       409 evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~  454 (1074)
T KOG0250|consen  409 EVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIEN  454 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            3567778999999999999999999999999999999999998864

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=96.94  E-value=1.1  Score=51.00  Aligned_cols=126  Identities=25%  Similarity=0.241  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhh--hHHHhHhHHHhHHHHhhhHHHhhhhHHHHhHHHhhhhhccccchhHHHHHHHh
Q 036820          480 DLKEQKEIVSSLNKELQALEKQTSK--DKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKS  557 (651)
Q Consensus       480 eL~~ekkiv~tLn~eL~al~~Q~~~--d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~~Le~ans~issle~eKevL~ks  557 (651)
                      ....=++-...+..||..+.+++..  +.+.-..+...++++.+-+++.+..-=.+-.+++..+..|..++.+..=+.+.
T Consensus       392 ~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  471 (650)
T TIGR03185       392 AKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQ  471 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344455666777777777765  45777888888999888888888888888888888888887777665444333


Q ss_pred             HHHHHhhhHHHhhchHHHHHHHHHhhhhhhhhhHh-hhhhHHHHhhcccchhh
Q 036820          558 LTEQKSIANESRENMEDAHNLVMRLGQERKSLDKR-SKKLEEELASAKGEILR  609 (651)
Q Consensus       558 l~eqk~~t~EAqeN~eDA~nli~~Lg~ERE~~e~r-~kkLEeELAsAKGEiLr  609 (651)
                          ......++.-+.-|+.+...|+.-++.+..+ ...||.++-..=..|+|
T Consensus       472 ----~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~f~~l~~  520 (650)
T TIGR03185       472 ----KINAFELERAITIADKAKKTLKEFREKLLERKLQQLEEEITKSFKKLMR  520 (650)
T ss_pred             ----HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                3333444555677888888888888777665 55677776554444433

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=96.94  E-value=1  Score=50.74  Aligned_cols=325  Identities=21%  Similarity=0.313  Sum_probs=221.1

Q ss_pred             cchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhh
Q 036820          278 DDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGN  357 (651)
Q Consensus       278 ~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~  357 (651)
                      +++.++...+.+.|.++-..                 .+..+++.|-.|-..+.+-+-  ..-.+.+..+..+|+.=-..
T Consensus        56 Gqt~~~fe~w~~~w~~i~~~-----------------~~~~ie~~L~~ae~~~~~~rf--~ka~~~i~~~~~~l~~~e~~  116 (560)
T PF06160_consen   56 GQTEEKFEEWRQKWDEIVTK-----------------QLPEIEEQLFEAEEYADKYRF--KKAKQAIKEIEEQLDEIEED  116 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-----------------hhHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHH
Confidence            55566777777777766432                 233344444444444333322  22233344444444444444


Q ss_pred             hhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHh-----------hhhHHHHHHHHHHHHHHHHHHHHhc-chHHHHhhh
Q 036820          358 VKNLKYELQITQETLETTRNEASDLEKQLKQSKD-----------SCADLETEISRIRAEFAEVKHTLGN-SLDEAKRSG  425 (651)
Q Consensus       358 ~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~-----------~~~~L~~qiskl~~E~~e~ke~l~~-~l~eak~~~  425 (651)
                      ++.+.++|...-+.=++.|.++-.|.+...+++.           ....|+.++..+...|.+..+.... .-.+|..+-
T Consensus       117 i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil  196 (560)
T PF06160_consen  117 IKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREIL  196 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            4455555555555555555555555555555543           4567899999999999998887766 667777777


Q ss_pred             hhhhhhHHhHHHHHHH-------hHHHHHhhhHHHHHHHH---------hhhhhhHHHHHHHHHhHhhHHHH-----HHH
Q 036820          426 EVLAGELFAAKEVLKK-------ASEELQNVSHELEATAE---------NRDSLRKELVNIYKKAEATANDL-----KEQ  484 (651)
Q Consensus       426 ~~Ls~El~s~ke~l~k-------~~eeL~~~S~eL~~~~e---------~rd~L~kEL~d~YKK~E~t~~eL-----~~e  484 (651)
                      ..+..++..+++++.+       .+.++-.--.+|...-.         .+.++-+++-++-++++.+.+-|     .+=
T Consensus       197 ~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~  276 (560)
T PF06160_consen  197 EKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEV  276 (560)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            7777777776665554       44444333333333221         13345555555555555555543     344


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHHHhHHHhhhh-----------------hccccc
Q 036820          485 KEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKAN-----------------SQISNL  547 (651)
Q Consensus       485 kkiv~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~~Le~an-----------------s~issl  547 (651)
                      +..+..+..+++.|-..+.++-+||+..+..+..-..-++.+.++.-.|..+++..+                 .++..|
T Consensus       277 ~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l  356 (560)
T PF06160_consen  277 EEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKEL  356 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence            667888899999999999999999999999999999999999999999888887654                 356677


Q ss_pred             hhHHHHHHHhHHHHHhhhHHHhhchHHHHHHHHHhhhhhhhhhHhhhhhHHHHhhcccchhhhhhccccccCcc
Q 036820          548 EDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSKTLV  621 (651)
Q Consensus       548 e~eKevL~ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ERE~~e~r~kkLEeELAsAKGEiLrLR~qi~ss~s~~  621 (651)
                      +..-..+...+.++...-.+.++.+++...-+..+..+=..|-.....|..+-..|+-.+.+++..+...+-.+
T Consensus       357 ~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~l  430 (560)
T PF06160_consen  357 EKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRL  430 (560)
T ss_pred             HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777788888888888888899999999999999999999999999999888888888888777776665544

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.92  E-value=0.058  Score=51.12  Aligned_cols=131  Identities=21%  Similarity=0.341  Sum_probs=100.4

Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhh---hHHhhhhhhhhhhhh
Q 036820          156 QQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLD---RIEGLQDKINLLSLE  232 (651)
Q Consensus       156 eQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~---~i~~Lq~kinLLs~e  232 (651)
                      -....++...+...+..+-.+......-|..+...+..+...|..++..+..+...+.+.=.   ..+.|+.||.+|-.+
T Consensus         9 ~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEee   88 (143)
T PF12718_consen    9 ADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEE   88 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHH
Confidence            34556777777777777777777777777777777777777777777777777777766543   356899999999999


Q ss_pred             hhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHHHHHHHHHhh
Q 036820          233 LREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKELK  295 (651)
Q Consensus       233 ~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk  295 (651)
                      +...+..+...+-.|.+-.....         .+=-+|..|-.+++..+.|++.+.+.|.+.|
T Consensus        89 le~ae~~L~e~~ekl~e~d~~ae---------~~eRkv~~le~~~~~~E~k~eel~~k~~~~k  142 (143)
T PF12718_consen   89 LEEAEKKLKETTEKLREADVKAE---------HFERKVKALEQERDQWEEKYEELEEKYKEAK  142 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhH---------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence            99999999888777654333222         2345699999999999999999999999875

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=96.92  E-value=0.42  Score=57.67  Aligned_cols=87  Identities=20%  Similarity=0.336  Sum_probs=61.6

Q ss_pred             HHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhh-----hhhhhhhhhHhcccchHHH
Q 036820          209 EEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQN-----ELNARASSLLVERDDSKQK  283 (651)
Q Consensus       209 e~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt-----~Ln~~v~sL~~ek~~~~~k  283 (651)
                      ..+|..-.+.|-..|+|+.-|...++.+...+......|+++|+.+..+..--+-.     ++-..|..+-.+.++.+.+
T Consensus       280 ~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~  359 (1074)
T KOG0250|consen  280 ERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEE  359 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777888899999999999999999999999999999999888876544333     3444455555555555555


Q ss_pred             HHHHHHHHHHhh
Q 036820          284 LEAVQKEYKELK  295 (651)
Q Consensus       284 ~~~l~key~~lk  295 (651)
                      +..++-.|..+|
T Consensus       360 ~~~~~n~i~~~k  371 (1074)
T KOG0250|consen  360 IREIENSIRKLK  371 (1074)
T ss_pred             HHHHHHHHHHHH
Confidence            555555544443

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=96.79  E-value=0.04  Score=59.36  Aligned_cols=139  Identities=23%  Similarity=0.308  Sum_probs=86.9

Q ss_pred             CchhhHHHHHhhhhhhhH---hHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHH
Q 036820           90 PRSGVLGALYALTQNEKK---ATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSA  166 (651)
Q Consensus        90 p~sGvlg~Ly~l~q~ekk---a~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSL  166 (651)
                      |--.-+|-+|++..+|+.   |+.--+..-..|+-|+-..+--..+..+                   +.|.=++||..-
T Consensus        47 ~~iss~gwff~i~~re~qlk~aa~~llq~kirk~~e~~eglr~i~es~~-------------------e~q~e~~qL~~q  107 (401)
T PF06785_consen   47 SIISSLGWFFAIGRREKQLKTAAGQLLQTKIRKITEKDEGLRKIRESVE-------------------ERQQESEQLQSQ  107 (401)
T ss_pred             HHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH-------------------HHHHHHHHHHHh
Confidence            444568999999998864   4444444444555555544433333333                   233333444333


Q ss_pred             HHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhh
Q 036820          167 NTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSS  246 (651)
Q Consensus       167 nsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~Ss  246 (651)
                      +.                 .+.++.-++++-+++++.+++.+++-+..-=+.=.-||-+++-+.++.+.||+..+.||--
T Consensus       108 nq-----------------kL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrE  170 (401)
T PF06785_consen  108 NQ-----------------KLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRE  170 (401)
T ss_pred             HH-----------------HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHH
Confidence            33                 3333333344444444444444444444433444556667778999999999999999999


Q ss_pred             hhhhHHHhhhhHhhhhhh
Q 036820          247 LQQKETELKNLNSVYKQN  264 (651)
Q Consensus       247 La~KE~e~~nL~~~y~qt  264 (651)
                      |++--.--+-|+.-|+-|
T Consensus       171 LaE~layqq~L~~eyQat  188 (401)
T PF06785_consen  171 LAEALAYQQELNDEYQAT  188 (401)
T ss_pred             HHHHHHHHHHHHHHhhcc
Confidence            999988889999999988

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=96.75  E-value=2.4  Score=52.16  Aligned_cols=109  Identities=22%  Similarity=0.283  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHH---HHHHHHHhHhhHH
Q 036820          403 IRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKE---LVNIYKKAEATAN  479 (651)
Q Consensus       403 l~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kE---L~d~YKK~E~t~~  479 (651)
                      ...+..++...+.+.+..-+.--+.+.-++..+++ +++.+.+...-+-.=  ..  ...+..+   +.+-|+...+...
T Consensus       617 ~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e-l~r~~~e~~~~~ek~--~~--e~~~e~~lk~~q~~~eq~~~E~~  691 (1317)
T KOG0612|consen  617 QRTEISEIIAELKEEISSLEETLKAGKKELLKVEE-LKRENQERISDSEKE--AL--EIKLERKLKMLQNELEQENAEHH  691 (1317)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHHHH--HH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555565556666677778888888 777777655433321  11  1112222   2222222211111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhh
Q 036820          480 DLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATK  521 (651)
Q Consensus       480 eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~  521 (651)
                      .+    ++..- ..+.+.+++-+.-++.||--++.++-+.|.
T Consensus       692 ~~----~L~~~-e~~~~e~~~~lseek~ar~k~e~~~~~i~~  728 (1317)
T KOG0612|consen  692 RL----RLQDK-EAQMKEIESKLSEEKSAREKAENLLLEIEA  728 (1317)
T ss_pred             HH----HHhhH-HHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence            11    11111 445566666677778888777766555443

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.55  E-value=0.43  Score=49.31  Aligned_cols=171  Identities=23%  Similarity=0.311  Sum_probs=120.4

Q ss_pred             HHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhh
Q 036820          351 LDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAG  430 (651)
Q Consensus       351 Ld~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~  430 (651)
                      ||.+...+   .+..-.-+++|.+.+++...+...+.....--.+++.||+.++.++.++.+.+.+-  +-+..+--=..
T Consensus        15 lD~e~~rl---~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~--e~kl~~v~~~~   89 (239)
T COG1579          15 LDLEKDRL---EPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRA--EEKLSAVKDER   89 (239)
T ss_pred             HHHHHHHH---HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccccHH
Confidence            45554443   34444667788888888888888888888888888888888888888877765331  22222222334


Q ss_pred             hHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhH
Q 036820          431 ELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARK  510 (651)
Q Consensus       431 El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk  510 (651)
                      |+..+.-=+...++......++|+-+.+....|++++.+.-.++..+-+.+.+.+.   ++.-++..+.++..--..-|-
T Consensus        90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~---~~e~e~~~i~e~~~~~~~~~~  166 (239)
T COG1579          90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEA---RLEEEVAEIREEGQELSSKRE  166 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            44444444556666777777788888888888888888888888888888877765   455677778887777778888


Q ss_pred             hHHHhHHHHhhhHHHhhhh
Q 036820          511 SLETDLEEATKSLDEMNRN  529 (651)
Q Consensus       511 ~Le~dLeeaT~SldEmn~~  529 (651)
                      .|..+|+..+=+.=|+.++
T Consensus       167 ~L~~~l~~ell~~yeri~~  185 (239)
T COG1579         167 ELKEKLDPELLSEYERIRK  185 (239)
T ss_pred             HHHHhcCHHHHHHHHHHHh
Confidence            8888888887777777654

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=96.27  E-value=3.9  Score=48.96  Aligned_cols=45  Identities=20%  Similarity=0.237  Sum_probs=32.4

Q ss_pred             cchhHHHHHHHhHHHHHhhhHHHhhchHHHHHHHHHhhhhhhhhhHhh
Q 036820          546 NLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRS  593 (651)
Q Consensus       546 sle~eKevL~ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ERE~~e~r~  593 (651)
                      -.+.|-+||.-.+.-|++.+.+-.|.+-.-|-   -+-.||+.+-.|.
T Consensus       480 KVeqe~emlKaen~rqakkiefmkEeiQethl---dyR~els~lA~r~  524 (1265)
T KOG0976|consen  480 KVEQEYEMLKAENERQAKKIEFMKEEIQETHL---DYRSELSELAHRK  524 (1265)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhcc
Confidence            46778889999999999988888777766663   3445666555543

>PRK09039 hypothetical protein; Validated

Probab=96.25  E-value=0.24  Score=52.71  Aligned_cols=141  Identities=20%  Similarity=0.279  Sum_probs=98.3

Q ss_pred             hhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhh--hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhh
Q 036820          228 LLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQN--ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASN  305 (651)
Q Consensus       228 LLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt--~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~d  305 (651)
                      .|+++|.+.+..+..|++-++.    +-.+-++..++  +|..+|..|-.....++..-..++..|...           
T Consensus        43 fLs~~i~~~~~eL~~L~~qIa~----L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~-----------  107 (343)
T PRK09039         43 FLSREISGKDSALDRLNSQIAE----LADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAEL-----------  107 (343)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------
Confidence            4677777777777777777665    33333333333  666777777776667777777777777732           


Q ss_pred             hhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHH
Q 036820          306 AKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQ  385 (651)
Q Consensus       306 a~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~  385 (651)
                      ..-..+-+..+.+|...|......++..+.-|.-|+++.+.+|+-       .-.|...|...++...+.+....+|...
T Consensus       108 ~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q-------la~le~~L~~ae~~~~~~~~~i~~L~~~  180 (343)
T PRK09039        108 AGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQ-------LAALEAALDASEKRDRESQAKIADLGRR  180 (343)
T ss_pred             hhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            122345567788889999999999999999999999999999988       3445666666666666666666666666


Q ss_pred             HHHHH
Q 036820          386 LKQSK  390 (651)
Q Consensus       386 L~~~~  390 (651)
                      |+.+.
T Consensus       181 L~~a~  185 (343)
T PRK09039        181 LNVAL  185 (343)
T ss_pred             HHHHH
Confidence            65554

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=96.12  E-value=3.8  Score=47.40  Aligned_cols=268  Identities=18%  Similarity=0.262  Sum_probs=143.5

Q ss_pred             HHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhH---------HH
Q 036820          137 KLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDK---------RT  207 (651)
Q Consensus       137 RLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedk---------d~  207 (651)
                      =|+.++.+++..+...+++...+-+++..+...|..+..+....-..|.++...+..+++.+...-..-         ..
T Consensus         5 ~l~qlq~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~   84 (617)
T PF15070_consen    5 SLKQLQAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQ   84 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHH
Confidence            367788888888888888888899999999999999998888888888888888888887665221100         01


Q ss_pred             HHH---HHHHhhhhHHh-hhh---hhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhh-hhhhhhhhhHhcccc
Q 036820          208 LEE---ERKQKLDRIEG-LQD---KINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQN-ELNARASSLLVERDD  279 (651)
Q Consensus       208 Ae~---eLeeKl~~i~~-Lq~---kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt-~Ln~~v~sL~~ek~~  279 (651)
                      ++.   .|+..++.+.. |+.   .-.-||.-+..++.++.+|--.|-..+.+.....++..+- +=...++.-+.-+-+
T Consensus        85 Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~e  164 (617)
T PF15070_consen   85 LQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRE  164 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHH
Confidence            111   12222222211 111   0122333334444444444333333222221111111100 223346677777888


Q ss_pred             hHHHHHHHHHHHHHhhhch-hhhhhhhhhhhh--HhHHHHHHHHHHHHHHHhH-hhhchhHHHh----------hh----
Q 036820          280 SKQKLEAVQKEYKELKLSS-ENETASNAKRLR--EKKEELHQLKEKLELTLDE-ACENRATIAK----------FT----  341 (651)
Q Consensus       280 ~~~k~~~l~key~~lk~ss-E~~aa~da~lL~--eke~~l~qLeekl~~Al~e-~~k~~~~Ia~----------L~----  341 (651)
                      .+++|.+++.-|..|--.. |..-+.+++.-.  +-...|++|+++|..--.- ..|+...|.=          |.    
T Consensus       165 LK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a  244 (617)
T PF15070_consen  165 LKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVA  244 (617)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            8889999888777664221 224555554322  2233444444444332110 0222222211          11    


Q ss_pred             --hhHHHHHHHHHHhhhh----hhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHH
Q 036820          342 --QEKDDLRKMLDNELGN----VKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIR  404 (651)
Q Consensus       342 --~e~~~~r~mLd~E~~~----~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~  404 (651)
                        +-+..-+..|-.++--    +..|.|+-.-..-+++-.+.|.....+.|..+..-|+.|.+++|-+.
T Consensus       245 ~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~  313 (617)
T PF15070_consen  245 AYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLSLMA  313 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhc
Confidence              1112223333333322    22333332222356677888888888889999999999999998643

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.09  E-value=5.2  Score=48.70  Aligned_cols=302  Identities=22%  Similarity=0.248  Sum_probs=152.3

Q ss_pred             HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhh-hh
Q 036820          164 NSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGV-QK  242 (651)
Q Consensus       164 nSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i-~~  242 (651)
                      ++....++.+...+|.+.+-+.........+...+..+.+.+.+.+..+.-|-..++.+.-.+.-+....+..|..+ .+
T Consensus       695 ~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~se  774 (1200)
T KOG0964|consen  695 EDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESELGSE  774 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhHH
Confidence            33444445555555555555555555555555555555555555555555555544444433333333333322111 12


Q ss_pred             hhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHH
Q 036820          243 LSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEK  322 (651)
Q Consensus       243 l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeek  322 (651)
                      |.|-|+.               +--.+|.+|+-+-+....|+.+|..+-.++-.   .+++..+.|-..-....++|   
T Consensus       775 l~sqLt~---------------ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~---rk~~le~~l~~kL~~r~~~l---  833 (1200)
T KOG0964|consen  775 LFSQLTP---------------EELERLSKLNKEINKLSVKLRALREERIDIET---RKTALEANLNTKLYKRVNEL---  833 (1200)
T ss_pred             HHhhcCH---------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhHH---
Confidence            2222222               33356888888888888888888877665322   23333333322222222222   


Q ss_pred             HHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHH
Q 036820          323 LELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISR  402 (651)
Q Consensus       323 l~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qisk  402 (651)
                                 ..-|++++                ...+.+++..++--|...-.++-..-.+|..+.+.-.+..++|..
T Consensus       834 -----------~~ei~~~~----------------d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~  886 (1200)
T KOG0964|consen  834 -----------EQEIGDLN----------------DSSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKE  886 (1200)
T ss_pred             -----------HHHhhhcc----------------cccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence                       22222222                233455555555555555555555566666666667777777777


Q ss_pred             HHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHH----hhhhhhHHHHHHHHHhHhhH
Q 036820          403 IRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAE----NRDSLRKELVNIYKKAEATA  478 (651)
Q Consensus       403 l~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e----~rd~L~kEL~d~YKK~E~t~  478 (651)
                      +..++..++.. ++-.... .--..--..++.-+.+|-+-++|+.--..+|...-+    +-.+..  .-...||+..-.
T Consensus       887 ~~~~lE~~~~l-ek~~~~~-~~~dKe~Ek~~~rk~~Ll~KreE~~ekIr~lG~Lp~daf~ky~~~~--~~el~kkL~~~n  962 (1200)
T KOG0964|consen  887 IKKELEKAKNL-EKEKKDN-INFDKELEKLVRRKHMLLKKREECCEKIRELGVLPEDAFEKYQDKK--SKELMKKLHRCN  962 (1200)
T ss_pred             HHHHHHHHHHH-HHHHhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHhccCC--HHHHHHHHHHHH
Confidence            77766655432 1111111 000011234566777888878877766666654322    111111  112345555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHH
Q 036820          479 NDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLD  524 (651)
Q Consensus       479 ~eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~Sld  524 (651)
                      .+|+.=..+    ||  .|| .|...=.|-|.+|..-.+|--+|-|
T Consensus       963 eelk~ys~V----NK--kAl-dQf~nfseQre~L~~R~eELd~s~~ 1001 (1200)
T KOG0964|consen  963 EELKGYSNV----NK--KAL-DQFVNFSEQRESLKKRQEELDRSKD 1001 (1200)
T ss_pred             HHHhhcchh----hH--HHH-HHHHHHHHHHHHHHHHHHHhccchh
Confidence            555443333    32  233 4666778888888877776555544

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.05  E-value=4.5  Score=47.69  Aligned_cols=270  Identities=23%  Similarity=0.297  Sum_probs=158.3

Q ss_pred             HHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhh
Q 036820          176 ELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELK  255 (651)
Q Consensus       176 eLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~  255 (651)
                      ++-..+--+..+..+++-+.+.+..+..+++.++.+|+|-|+++..=.+-=+-|.-|+..                  |-
T Consensus       122 efE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~------------------~~  183 (717)
T PF09730_consen  122 EFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELDQ------------------HL  183 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hc
Confidence            344455556667777888889999999999999999999999998766655555555432                  12


Q ss_pred             hhHhhhhhhhhhhhhh---------------------------------------------------------hhHhccc
Q 036820          256 NLNSVYKQNELNARAS---------------------------------------------------------SLLVERD  278 (651)
Q Consensus       256 nL~~~y~qt~Ln~~v~---------------------------------------------------------sL~~ek~  278 (651)
                      |.+++|.-.+|+-.+.                                                         -|.+|-+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lv~DLfSEl~  263 (717)
T PF09730_consen  184 NIESISYLSNLAISLDGLKFSEDPRAATEPNNDDEEENGGLNGGPGLAKGNGDNRMSTPRKSESFSPAPSLVSDLFSELN  263 (717)
T ss_pred             CccccccccchhhcccccccccccccccCCCCchhhhcchhhccchhcccccccccCCCCCCCCCCCCCcccchhhhhcc
Confidence            3333332222222221                                                         2222211


Q ss_pred             chHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHH---HHHHHHHHHhHhhhchhHHHhhhhhHHHHHHH-----
Q 036820          279 DSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQ---LKEKLELTLDEACENRATIAKFTQEKDDLRKM-----  350 (651)
Q Consensus       279 ~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~q---Leekl~~Al~e~~k~~~~Ia~L~~e~~~~r~m-----  350 (651)
                           +++|+|==..|.-..           +||-..++.   +.-+|..+-++.+.-+..|..|+..+++++.+     
T Consensus       264 -----~~EiqKL~qQL~qve-----------~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke  327 (717)
T PF09730_consen  264 -----LSEIQKLKQQLLQVE-----------REKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKE  327 (717)
T ss_pred             -----hHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchh
Confidence                 222322222222111           222223332   33467777788888889999999888888873     


Q ss_pred             ----HHHhhhhhhhh---HHH-----HHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcch
Q 036820          351 ----LDNELGNVKNL---KYE-----LQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSL  418 (651)
Q Consensus       351 ----Ld~E~~~~k~L---~~~-----lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l  418 (651)
                          .|.+-....+=   -|+     +.+-+--+...-+++.+|..+|+.++.-+..++.....-..-|..--+.|.+++
T Consensus       328 ~~~~~d~~~~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl  407 (717)
T PF09730_consen  328 QQSAEDSEKERDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKL  407 (717)
T ss_pred             hhhhhhcccccccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                22222111110   011     233455566677788888888888877777777766655555555555555555


Q ss_pred             HHHHh-------hhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhh------------hHHHHHHHHHhHhhHH
Q 036820          419 DEAKR-------SGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSL------------RKELVNIYKKAEATAN  479 (651)
Q Consensus       419 ~eak~-------~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L------------~kEL~d~YKK~E~t~~  479 (651)
                      .-.+.       ....|=+||-.+..+...++..|-.+-.+|+++++.-..|            ++=++|.|++.-.+..
T Consensus       408 ~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~cNgeTPnRVmLD~yr~~r~~~~  487 (717)
T PF09730_consen  408 MSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCMCNGETPNRVMLDYYRQGRQTRR  487 (717)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCccHHHHHHHhhhhhhc
Confidence            55554       4455667777777776666666666666666665544333            3446788888766553

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=95.81  E-value=7.1  Score=47.95  Aligned_cols=110  Identities=26%  Similarity=0.387  Sum_probs=64.4

Q ss_pred             hhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHH-H
Q 036820          359 KNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAK-E  437 (651)
Q Consensus       359 k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~k-e  437 (651)
                      ..|+..++..+..|....++...++++|...+..-..+..+++..+.+..-.+..+++-..+..    .+-.++...+ +
T Consensus       603 e~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~  678 (1201)
T PF12128_consen  603 EELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNERE----QLKQEIEEAKEE  678 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence            3677778888888888888888888888887777777777777777776666555444333332    2222222222 2


Q ss_pred             HHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHH
Q 036820          438 VLKKASEELQNVSHELEATAENRDSLRKELVNIYK  472 (651)
Q Consensus       438 ~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YK  472 (651)
                      -..+.+..+.....++.........+..++-+.++
T Consensus       679 ~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~  713 (1201)
T PF12128_consen  679 RKEQIEEQLNELEEELKQLKQELEELLEELKEQLK  713 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22334444444445555555444444444444443

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=95.71  E-value=2.4  Score=42.44  Aligned_cols=132  Identities=23%  Similarity=0.335  Sum_probs=106.8

Q ss_pred             HHHHHHHhhhhHHHHHhhHHHHHHH-HHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHH
Q 036820          113 LEYMKARLKEKEAAIVSLEKDFESK-LQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEI  191 (651)
Q Consensus       113 iesm~~kL~e~Eaa~~~lDedFEkR-LKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eI  191 (651)
                      |-...+.+.+...-+.-+.  .|.+ |+.+|....+-+.+|-+.+.-|=..|..-++.|..+...|++.++...++...+
T Consensus        14 i~~L~n~l~elq~~l~~l~--~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~kl   91 (194)
T PF15619_consen   14 IKELQNELAELQRKLQELR--KENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKL   91 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555444333332  2333 567777777778888888999999999999999999999999999999999999


Q ss_pred             HHHHhHHHhhhhhHHHHHHHHH-HhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhh
Q 036820          192 DSLQTSLLKFGEDKRTLEEERK-QKLDRIEGLQDKINLLSLELREKDDGVQKLSSS  246 (651)
Q Consensus       192 eql~ssLsqAEedkd~Ae~eLe-eKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~Ss  246 (651)
                      ...+..+-.+.+.+..+..-.. -.|...+-|+.++.-+...+.+++..|+.|.-.
T Consensus        92 k~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~  147 (194)
T PF15619_consen   92 KDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQ  147 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988877666 368889999999999999999999999998653

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=95.62  E-value=0.65  Score=50.36  Aligned_cols=49  Identities=12%  Similarity=0.135  Sum_probs=43.4

Q ss_pred             hHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhh
Q 036820          310 REKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNV  358 (651)
Q Consensus       310 ~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~  358 (651)
                      ..-..+|.+|+.++......-..++..+.++..+++.++.-+..|+..+
T Consensus       250 ~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~~  298 (498)
T TIGR03007       250 SELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAK  298 (498)
T ss_pred             CchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhcccc
Confidence            3446779999999999999999999999999999999999999998653

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=95.61  E-value=6.2  Score=45.87  Aligned_cols=282  Identities=22%  Similarity=0.230  Sum_probs=166.2

Q ss_pred             hHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHH--HHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 036820          335 ATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLE--KQLKQSKDSCADLETEISRIRAEFAEVKH  412 (651)
Q Consensus       335 ~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~--~~L~~~~~~~~~L~~qiskl~~E~~e~ke  412 (651)
                      +.+.=..--++.+.+-||.++..+.+--+..+....-|...++++-+..  .-+..++.+..-...+|--|+.-...+-.
T Consensus         8 ~~~~Wk~~dle~LQreLd~~~~~l~~~Q~~S~~srk~L~e~trefkk~~pe~k~k~~~~llK~yQ~EiD~LtkRsk~aE~   87 (629)
T KOG0963|consen    8 VTQYWKRFDLERLQRELDAEATEIAQRQDESEISRKRLAEETREFKKNTPEDKLKMVNPLLKSYQSEIDNLTKRSKFAEA   87 (629)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            3344444556778888888887766666555555555555555554443  23455666666666777666654443332


Q ss_pred             HHhc---chHHHH-------------hhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHh
Q 036820          413 TLGN---SLDEAK-------------RSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEA  476 (651)
Q Consensus       413 ~l~~---~l~eak-------------~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~  476 (651)
                      ++-+   +|-+|=             -..+-.+.|.--.++-|.+-..++...=++=+.|.-..+.+.|...-.--..+.
T Consensus        88 afl~vye~L~eaPDP~pll~sa~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~  167 (629)
T KOG0963|consen   88 AFLDVYEKLIEAPDPVPLLASAAELLNKQQKASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIEN  167 (629)
T ss_pred             HHHHHHHHHhhCCCCchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            2211   111100             000003444555555555555555555444455555555555543333223332


Q ss_pred             hHHH----HHHH-HHHHHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhH------------HHHhHHHhh
Q 036820          477 TAND----LKEQ-KEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNA------------LELSKNLEK  539 (651)
Q Consensus       477 t~~e----L~~e-kkiv~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~------------~~LS~~Le~  539 (651)
                      .+++    +-++ ...-+-|-.+.+++.+|+..-..-=.+|+.+++..-..+-+ +++.            -.+-.+|+.
T Consensus       168 ~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~-~~s~~dee~~~k~aev~lim~eLe~  246 (629)
T KOG0963|consen  168 AANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFD-LKSKYDEEVAAKAAEVSLIMTELED  246 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            2222    2211 12333444555556666555555555666666554444433 2222            244568999


Q ss_pred             hhhccccchhHHHHHHHhHHHHHhhhHHHh-------------------hchHHHHHHHHHhhhhhhhhhHhhhhhHHHH
Q 036820          540 ANSQISNLEDEKAVLYKSLTEQKSIANESR-------------------ENMEDAHNLVMRLGQERKSLDKRSKKLEEEL  600 (651)
Q Consensus       540 ans~issle~eKevL~ksl~eqk~~t~EAq-------------------eN~eDA~nli~~Lg~ERE~~e~r~kkLEeEL  600 (651)
                      ||++|-.+|.|.+.|...+..+...+.-++                   .=..|-|++=..+..|||+.---...||-++
T Consensus       247 aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l  326 (629)
T KOG0963|consen  247 AQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKEL  326 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988776665551                   1234566677778889999999999999999


Q ss_pred             hhcccchhhhhhccccc
Q 036820          601 ASAKGEILRLRSQINSS  617 (651)
Q Consensus       601 AsAKGEiLrLR~qi~ss  617 (651)
                      -+..|+|=-|+.+.++-
T Consensus       327 ~~~~~~leel~~kL~~~  343 (629)
T KOG0963|consen  327 KAKISELEELKEKLNSR  343 (629)
T ss_pred             HHHHHHHHHHHHHHhhh
Confidence            99999999999988764

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.60  E-value=6.7  Score=46.17  Aligned_cols=224  Identities=20%  Similarity=0.239  Sum_probs=135.6

Q ss_pred             HHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhh
Q 036820          165 SANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLS  244 (651)
Q Consensus       165 SLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~  244 (651)
                      +.+.+.+-+...+....+-..+++..+.++++++....+-.+..+..++..=..|.-++..++.-..++++.-..+++.-
T Consensus       134 ~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~  213 (716)
T KOG4593|consen  134 QCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQ  213 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555666666667777777788888888888888888888888888888888888888888888888888888888877


Q ss_pred             hhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHHHHHHHHHh----hhchhhhhhhhhhhh-------hHhH
Q 036820          245 SSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKEL----KLSSENETASNAKRL-------REKK  313 (651)
Q Consensus       245 SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l~key~~l----k~ssE~~aa~da~lL-------~eke  313 (651)
                      -+|.+--...+-......|+..+..+..++..-.+--+.+..+.+.|.++    +.++|.++..  ++|       ..|=
T Consensus       214 ~~l~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv--~~LqeE~e~Lqskl  291 (716)
T KOG4593|consen  214 ASLEERADHEQQNAELEQQLSLSEELEAINKNMKDQLQELEELERALSQLREELATLRENRETV--GLLQEELEGLQSKL  291 (716)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHH
Confidence            77777666666666666677666666666665555555666666666544    4444544432  222       2222


Q ss_pred             HHHHHHHHHHHHHHhHhhhchhHHHhhhh------------hHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhH
Q 036820          314 EELHQLKEKLELTLDEACENRATIAKFTQ------------EKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASD  381 (651)
Q Consensus       314 ~~l~qLeekl~~Al~e~~k~~~~Ia~L~~------------e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~  381 (651)
                      .++|-|..++   ++--=.|-.+...|+.            -.+++-.-+.+|..++++|..-.    -++.-.++=+..
T Consensus       292 ~~~~~l~~~~---~~LELeN~~l~tkL~rwE~~~~~~~~~~~~~~~~~~~~~e~s~~~~l~~~~----~t~~s~~~~~~r  364 (716)
T KOG4593|consen  292 GRLEKLQSTL---LGLELENEDLLTKLQRWERADQEMGSLRTPEDLMEKLVNEQSRNANLKNKN----STVTSPARGLER  364 (716)
T ss_pred             HHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhhhcccc----ccccCcccchHH
Confidence            2233332222   2222223333333332            12334444555666665555433    234445555566


Q ss_pred             HHHHHHHHHhhhhHHH
Q 036820          382 LEKQLKQSKDSCADLE  397 (651)
Q Consensus       382 L~~~L~~~~~~~~~L~  397 (651)
                      ....|.+..+.|..+.
T Consensus       365 ~~q~lke~~k~~~~it  380 (716)
T KOG4593|consen  365 ARQLLKEELKQVAGIT  380 (716)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            6666666666555443

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.56  E-value=4.1  Score=49.78  Aligned_cols=294  Identities=21%  Similarity=0.273  Sum_probs=184.0

Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhh
Q 036820          156 QQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELRE  235 (651)
Q Consensus       156 eQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~  235 (651)
                      |.-=+|+|-..+.+|.....++++-+..+..-..+|..++..+.-+..+....+..|......+...++-|+-.--+|. 
T Consensus       650 dek~~~~L~~~k~rl~eel~ei~~~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~-  728 (1141)
T KOG0018|consen  650 DEKEVDQLKEKKERLLEELKEIQKRRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEIS-  728 (1141)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHH-
Confidence            3445788888888888888877776666666666777777666666555555555444444333333332221111111 


Q ss_pred             hhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHHHHH-HHHHhhhchhhhhhhhhhhhhHhHH
Q 036820          236 KDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQK-EYKELKLSSENETASNAKRLREKKE  314 (651)
Q Consensus       236 Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l~k-ey~~lk~ssE~~aa~da~lL~eke~  314 (651)
                                                   ++-.+++..-...++..++.+.++- =|.++-..-=      .. ++  +.
T Consensus       729 -----------------------------~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~ig------v~-ir--~Y  770 (1141)
T KOG0018|consen  729 -----------------------------EIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIG------VR-IR--EY  770 (1141)
T ss_pred             -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC------ee-ee--hH
Confidence                                         2222333344444455555554432 2444322100      00 11  11


Q ss_pred             HHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhh
Q 036820          315 ELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCA  394 (651)
Q Consensus       315 ~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~  394 (651)
                      +=+++              +..+|+=..|+++-..-|.+.+.-.++     +-|+..++..+..|+++..+++....--.
T Consensus       771 ee~~~--------------~~~~a~k~~ef~~q~~~l~~~l~fe~~-----~d~~~~ve~~~~~v~~~~~~~~~~~~~e~  831 (1141)
T KOG0018|consen  771 EEREL--------------QQEFAKKRLEFENQKAKLENQLDFEKQ-----KDTQRRVERWERSVEDLEKEIEGLKKDEE  831 (1141)
T ss_pred             HHHHH--------------HHHHHHHHHHHHHHHHHHhhhhhheec-----ccHHHHHHHHHHHHHHHHHhHHhhHHHHH
Confidence            11222              344666677888888888888888877     77899999999999999999988766433


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHh
Q 036820          395 DLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKA  474 (651)
Q Consensus       395 ~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~  474 (651)
                      -....|.    |..++..   ++    ++..+-.-+|+-.++.+++....++.....++.++...++-+.-|-.++..+.
T Consensus       832 ~~~k~i~----e~~~~e~---k~----k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~~c  900 (1141)
T KOG0018|consen  832 AAEKIIA----EIEELEK---KN----KSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHNLLSKC  900 (1141)
T ss_pred             HHHHHHh----hHHHHHH---HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence            3333333    3333333   11    77888888999999999999999999999999999999999999999988875


Q ss_pred             Hh----------hHHHHHHHHHH-HHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHHH
Q 036820          475 EA----------TANDLKEQKEI-VSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALEL  533 (651)
Q Consensus       475 E~----------t~~eL~~ekki-v~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~L  533 (651)
                      .-          +-++.+.==.| -..|-+++.               |+.+|+|-+.-|+.|--|+-.|
T Consensus       901 kl~~I~vPl~~gs~~d~~~~ieidy~~L~~~y~---------------L~~kl~e~~~~l~~~~Pn~kA~  955 (1141)
T KOG0018|consen  901 KLEDIEVPLSSGSMDDIVIGIEIDYSGLPREYK---------------LQQKLEEKQSVLNRIAPNLKAL  955 (1141)
T ss_pred             hhccccccccCCCccccceecccccccccHHHH---------------HHHHHHHHHHHHHHhCcchHHH
Confidence            42          22232220011 123445544               8999999998888886665443

>PRK09039 hypothetical protein; Validated

Probab=95.50  E-value=1.1  Score=47.89  Aligned_cols=50  Identities=18%  Similarity=0.314  Sum_probs=43.4

Q ss_pred             hhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 036820          359 KNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFA  408 (651)
Q Consensus       359 k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~  408 (651)
                      -=|++++..-++.|.....++++|++.|.--+..+.+|+..|..++..+.
T Consensus        42 ~fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~   91 (343)
T PRK09039         42 FFLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLS   91 (343)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            34678888888889999999999999999999999999999999888877

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=95.44  E-value=9.2  Score=46.79  Aligned_cols=320  Identities=18%  Similarity=0.172  Sum_probs=182.4

Q ss_pred             hhhhHhHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHH-------HHHHHHHhHHHHHH
Q 036820          103 QNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMN-------KLNSANTTISGLGK  175 (651)
Q Consensus       103 q~ekka~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk~kEeeQSLlD-------QLnSLnsTLtSL~k  175 (651)
                      .+.-.++.++-+-|+..|.--+|--.-  -.||..+...+.+++++-- -.+.++.-..       +|...+..|...|.
T Consensus       270 kedN~vLleekeMLeeQLq~lrarse~--~tleseiiqlkqkl~dm~~-erdtdr~kteeL~eEnstLq~q~eqL~~~~e  346 (1195)
T KOG4643|consen  270 KEDNRVLLEEKEMLEEQLQKLRARSEG--ATLESEIIQLKQKLDDMRS-ERDTDRHKTEELHEENSTLQVQKEQLDGQME  346 (1195)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHhcccc--CChHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            344567777888888887666554322  5678888888888777761 0111222222       33444567777888


Q ss_pred             HHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhh
Q 036820          176 ELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELK  255 (651)
Q Consensus       176 eLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~  255 (651)
                      .+++....-+..+.-.......++..+-.+-.++.  .+++..++-+|..             .+.++-|.-.+++.+.+
T Consensus       347 llq~~se~~E~en~Sl~~e~eqLts~ralkllLEn--rrlt~tleelqss-------------s~Ee~~SK~leleke~K  411 (1195)
T KOG4643|consen  347 LLQIFSENEELENESLQVENEQLTSDRALKLLLEN--RRLTGTLEELQSS-------------SYEELISKHLELEKEHK  411 (1195)
T ss_pred             HhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHh--HHHHHHHHHHhhh-------------hHHHHHHHHHHHHHHhH
Confidence            88887666677777777777777763333333322  3556666665543             34555566666666666


Q ss_pred             hhHhhhhhh------------hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHH
Q 036820          256 NLNSVYKQN------------ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKL  323 (651)
Q Consensus       256 nL~~~y~qt------------~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl  323 (651)
                      ||..-+.+-            +|-..-.-|.+|++.+.+.++..++-|..-            .++.+-.+++.-+-+|+
T Consensus       412 nLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq------------~~e~e~~~q~ls~~~Q~  479 (1195)
T KOG4643|consen  412 NLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQ------------SLENEELDQLLSLQDQL  479 (1195)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------------HHHhHHHHHHHHHHHHH
Confidence            665544432            111112234445554444444444444332            33444444444444444


Q ss_pred             HHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHH
Q 036820          324 ELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRI  403 (651)
Q Consensus       324 ~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl  403 (651)
                      ..-..+.   +.-|-.|+.-+.+-..|+.+=..-...|+..++--...++.--+..-.|+..+--...-|..|.-||+.|
T Consensus       480 ~~et~el---~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~L  556 (1195)
T KOG4643|consen  480 EAETEEL---LNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSL  556 (1195)
T ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            4333332   2236677777777777776666666777777777777777776777777776666666677777777665


Q ss_pred             HHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHh
Q 036820          404 RAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKA  474 (651)
Q Consensus       404 ~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~  474 (651)
                      --= ..-...|..++.+               +|   --..++..+.+-|.+..-.++.|.+|..|-|+--
T Consensus       557 k~t-~qn~~~LEq~~n~---------------lE---~~~~elkk~idaL~alrrhke~LE~e~mnQql~~  608 (1195)
T KOG4643|consen  557 KTT-SQNGALLEQNNND---------------LE---LIHNELKKYIDALNALRRHKEKLEEEIMNQQLFE  608 (1195)
T ss_pred             HHH-hHHHHHHHHhhhH---------------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            321 1111112211111               12   1234566667777777778888888888877643

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=95.21  E-value=8.9  Score=45.26  Aligned_cols=369  Identities=21%  Similarity=0.313  Sum_probs=184.0

Q ss_pred             HHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHH
Q 036820          207 TLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEA  286 (651)
Q Consensus       207 ~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~  286 (651)
                      .++.-|.-....++-+.|.++.|.-++..|-..+.+..-.-.-||.++.-|..+....      +.|+-++..++.=..+
T Consensus       360 ~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e~------qkll~ekk~~eki~E~  433 (786)
T PF05483_consen  360 NLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMTKQKNNKEVELEELKKILAEK------QKLLDEKKQFEKIAEE  433 (786)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence            3344444444444555555555555555555555555555555555555555443322      1233333333222222


Q ss_pred             HHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhh-hhhhhhHHHH
Q 036820          287 VQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNEL-GNVKNLKYEL  365 (651)
Q Consensus       287 l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~-~~~k~L~~~l  365 (651)
                      ++---.+|           ..+|.-++.++|.|+.+|.++.---...-.-+.+|..+++.- ++=..|+ .+.+.|.-+-
T Consensus       434 lq~~eqel-----------~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~E-kLKN~ELt~~~nkLslEk  501 (786)
T PF05483_consen  434 LQGTEQEL-----------TGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQE-KLKNTELTVNCNKLSLEK  501 (786)
T ss_pred             HHHHHHHH-----------HHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            22111111           246788999999999999988765444444455555554432 2333344 3333333221


Q ss_pred             HhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHH
Q 036820          366 QITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEE  445 (651)
Q Consensus       366 q~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~ee  445 (651)
                      ..-+---.+---++.++.+.++.++..--.                  +...|+.-+.....|-.||-++++-+++..+|
T Consensus       502 k~laQE~~~~~~elKk~qedi~~~k~qee~------------------~~kqie~Lee~~~~Lrneles~~eel~~k~~E  563 (786)
T PF05483_consen  502 KQLAQETSDMALELKKQQEDINNSKKQEEK------------------MLKQIENLEETNTQLRNELESVKEELKQKGEE  563 (786)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111111111112222333333333322222                  23333333333444556777777777777776


Q ss_pred             HHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhh---HHHHHH---H-HHHHHHHHHHHHHHHHHhhhhHHHh-------Hh
Q 036820          446 LQNVSHELEATAENRDSLRKELVNIYKKAEAT---ANDLKE---Q-KEIVSSLNKELQALEKQTSKDKEAR-------KS  511 (651)
Q Consensus       446 L~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t---~~eL~~---e-kkiv~tLn~eL~al~~Q~~~d~EaR-------k~  511 (651)
                      +......   .-++..+..-|...--|.+-..   -+-|..   . .+..--|-.+-.+|.||+.++.---       ..
T Consensus       564 v~~kl~k---sEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~  640 (786)
T PF05483_consen  564 VKCKLDK---SEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNK  640 (786)
T ss_pred             HHHHhhh---HHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6554332   2233333333333222222111   111111   0 1122235556667777777665433       34


Q ss_pred             HHHhHHHHhhhHHHhhhhHHHHhHHHhhhhhccccchhHHH----HHHHhHHHHHhhhHHHhhchHHHHHHH--------
Q 036820          512 LETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKA----VLYKSLTEQKSIANESRENMEDAHNLV--------  579 (651)
Q Consensus       512 Le~dLeeaT~SldEmn~~~~~LS~~Le~ans~issle~eKe----vL~ksl~eqk~~t~EAqeN~eDA~nli--------  579 (651)
                      |+-+++-+-+-.+||..+   +=++|+.-..--+.|..|-+    +-..|+--|+.+---.|--|.|---|+        
T Consensus       641 L~~E~e~~kk~~eE~~~~---~~keie~K~~~e~~L~~EveK~k~~a~EAvK~q~EtdlrCQhKIAeMVALMEKHK~qYD  717 (786)
T PF05483_consen  641 LQEELENLKKKHEEETDK---YQKEIESKSISEEELLGEVEKAKLTADEAVKLQEETDLRCQHKIAEMVALMEKHKHQYD  717 (786)
T ss_pred             HHHHHHHHHhHHHHHHHH---HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            667777777777787664   55677765555555555543    334455555555555555555544333        


Q ss_pred             -----------HHhhhhhhhhhHhhhhhHHHHhhcccchhhhhhcccccc
Q 036820          580 -----------MRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSK  618 (651)
Q Consensus       580 -----------~~Lg~ERE~~e~r~kkLEeELAsAKGEiLrLR~qi~ss~  618 (651)
                                 ++--+|-|.+- --+-||-||.+-|.||.-|+-|.-.-.
T Consensus       718 kiVEEkDaEL~~~k~KE~E~~s-~k~sLE~ELs~lk~el~slK~QLk~e~  766 (786)
T PF05483_consen  718 KIVEEKDAELGLYKKKEQEQSS-HKASLELELSNLKNELSSLKKQLKTER  766 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence                       33345555554 234689999999999999998875543

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=95.18  E-value=1.5  Score=45.36  Aligned_cols=158  Identities=21%  Similarity=0.346  Sum_probs=116.9

Q ss_pred             hhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHH
Q 036820          269 RASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLR  348 (651)
Q Consensus       269 ~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r  348 (651)
                      .++.|..+++...-++..+++.|...++  |.-++.|.  +..++.++.-++.+       .+....-|.+++..+++++
T Consensus        11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~--e~e~~~~~--~~~~~~e~e~le~q-------v~~~e~ei~~~r~r~~~~e   79 (239)
T COG1579          11 AIQKLDLEKDRLEPRIKEIRKALKKAKA--ELEALNKA--LEALEIELEDLENQ-------VSQLESEIQEIRERIKRAE   79 (239)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHH--HHHHHHHH--HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence            4677778888888888888888876654  33333332  23444444444443       4555666777777777777


Q ss_pred             HHHHHhh--hhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhh
Q 036820          349 KMLDNEL--GNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGE  426 (651)
Q Consensus       349 ~mLd~E~--~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~  426 (651)
                      ..+++--  ...+.|-++++..++.....+.++.+|-+.+......-..|...+.++...|.+.+..+...+..+...+.
T Consensus        80 ~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~  159 (239)
T COG1579          80 EKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQ  159 (239)
T ss_pred             HHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7774322  23467888999999999999999999999999999999999999999999999999999998888888888


Q ss_pred             hhhhhHHhHHH
Q 036820          427 VLAGELFAAKE  437 (651)
Q Consensus       427 ~Ls~El~s~ke  437 (651)
                      .+.++-+.+++
T Consensus       160 ~~~~~~~~L~~  170 (239)
T COG1579         160 ELSSKREELKE  170 (239)
T ss_pred             HHHHHHHHHHH
Confidence            77776655543

>PRK04863 mukB cell division protein MukB; Provisional

Probab=95.03  E-value=15  Score=46.77  Aligned_cols=105  Identities=11%  Similarity=0.175  Sum_probs=52.1

Q ss_pred             HHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhh
Q 036820          153 KEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLE  232 (651)
Q Consensus       153 kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e  232 (651)
                      ..++-.+++.....+.........|...+.........+..+..++...+...+.++.-+...-+ +..++.++..+..+
T Consensus       278 ~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee-~lr~q~ei~~l~~~  356 (1486)
T PRK04863        278 ANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQT-ALRQQEKIERYQAD  356 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            33455555555555555555555555555555555555555555555555544444444333322 22345555555555


Q ss_pred             hhhhhhhhhhhhhhhhhhHHHhhhhH
Q 036820          233 LREKDDGVQKLSSSLQQKETELKNLN  258 (651)
Q Consensus       233 ~~~Ke~~i~~l~SsLa~KE~e~~nL~  258 (651)
                      +++....+++....+.+.+.++..+.
T Consensus       357 LeELee~Lee~eeeLeeleeeleele  382 (1486)
T PRK04863        357 LEELEERLEEQNEVVEEADEQQEENE  382 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555544444443

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.92  E-value=14  Score=45.94  Aligned_cols=58  Identities=17%  Similarity=0.290  Sum_probs=33.4

Q ss_pred             ccccchhHHHHH----HHhHHHHHhhhHHHhhchHHHHHHHHHhhhhhhhhhH-hhhhhHHHH
Q 036820          543 QISNLEDEKAVL----YKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDK-RSKKLEEEL  600 (651)
Q Consensus       543 ~issle~eKevL----~ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ERE~~e~-r~kkLEeEL  600 (651)
                      .|+-||...+-|    -.++.|=...-.+...-..++.+...++-.=|+.++- |.+.|.|=+
T Consensus      1079 ~i~~lE~~~~~l~~vd~~~i~eY~~k~~~y~~rv~~l~~~t~kr~~~re~l~~Lrk~RldEFm 1141 (1293)
T KOG0996|consen 1079 KIALLEKRVEELREVDLGVIAEYAKKVELYLKRVAELEKFTQKRDEHREKLEELRKRRLDEFM 1141 (1293)
T ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444    3455566666666777777777777777666666643 334444433

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.80  E-value=9.9  Score=45.68  Aligned_cols=308  Identities=21%  Similarity=0.240  Sum_probs=161.5

Q ss_pred             hhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhh
Q 036820          299 ENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNE  378 (651)
Q Consensus       299 E~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e  378 (651)
                      =.+-+.|-+.    -+..++||.-+..|++-...-..    -|+.-+..-+-+|+=+...|.+.-+++-+-+.|..   .
T Consensus       611 ~~k~~lD~~f----~kL~kele~~i~k~ls~~~eee~----~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ---~  679 (970)
T KOG0946|consen  611 NTKLALDFEF----KKLFKELEGLIAKLLSSKTEEEE----QTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQ---M  679 (970)
T ss_pred             CchhhhhHHH----HHHHHHHHHHHHHHhcCCCccch----hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---H
Confidence            4455666544    45677888888888765433221    12222233334444444455555444444444433   4


Q ss_pred             hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh------cchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHH
Q 036820          379 ASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLG------NSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHE  452 (651)
Q Consensus       379 ~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~------~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~e  452 (651)
                      ...|+.+-.+...--++...+.|.+.+++.-.|-.|.      +.+-+.-.+.+..-.||.++..--++..-+.+-...+
T Consensus       680 ~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~  759 (970)
T KOG0946|consen  680 EKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKE  759 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555666666666666665555554      1222222334444556666666555555555555555


Q ss_pred             HHHHHHhhhhhhHHHHHHHHHhHhhH------HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHh
Q 036820          453 LEATAENRDSLRKELVNIYKKAEATA------NDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEM  526 (651)
Q Consensus       453 L~~~~e~rd~L~kEL~d~YKK~E~t~------~eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEm  526 (651)
                      |..--.-+.+.++.-.++--+--+.+      ...+++.+=.++...-++.+..++...++.-..+-.-...+-.++++|
T Consensus       760 L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m  839 (970)
T KOG0946|consen  760 LNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESM  839 (970)
T ss_pred             HHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHh
Confidence            53333333444443332221111111      122222222566667778888888888888888888889999999999


Q ss_pred             hhhHHHHhHHHhhhhhccccchhHHHHH---HHhHHHHHhhhHHHhhchHHHHHHHHHhh-hhhhhhhHhh-------hh
Q 036820          527 NRNALELSKNLEKANSQISNLEDEKAVL---YKSLTEQKSIANESRENMEDAHNLVMRLG-QERKSLDKRS-------KK  595 (651)
Q Consensus       527 n~~~~~LS~~Le~ans~issle~eKevL---~ksl~eqk~~t~EAqeN~eDA~nli~~Lg-~ERE~~e~r~-------kk  595 (651)
                      -.---++|+++..+.-+.|++..+-.-+   -+.++|-..+ -+||.   |+-+|+.-+- .+-++++-+.       +.
T Consensus       840 ~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~s-l~~qa---dse~l~ka~~~~k~~nl~lki~s~kqeqee  915 (970)
T KOG0946|consen  840 GSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISS-LEAQA---DSETLSKALKTVKSENLSLKIVSNKQEQEE  915 (970)
T ss_pred             hccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhh-HHHhh---cchHHHHHHHHhhcccchhcccchhhhHHH
Confidence            8887888888887777666666443222   2333332222 22332   2333333221 1112221111       11


Q ss_pred             hHHHHhhcccchhhhhhccccccCcc
Q 036820          596 LEEELASAKGEILRLRSQINSSKTLV  621 (651)
Q Consensus       596 LEeELAsAKGEiLrLR~qi~ss~s~~  621 (651)
                      |==++|.-+--|.-||.-+.--+.++
T Consensus       916 ~~v~~~~~~~~i~alk~~l~dL~q~~  941 (970)
T KOG0946|consen  916 LLVLLADQKEKIQALKEALEDLNQPV  941 (970)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHhCCCh
Confidence            22245666666777777777666666

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=94.65  E-value=2.4  Score=40.44  Aligned_cols=95  Identities=29%  Similarity=0.344  Sum_probs=78.3

Q ss_pred             HhHHHhHHHHhhhHHHhhhhHHHHh---HHHhhhhhccccchhHHHHHHHhHHHHHhhhHHHhhchHHHHHHHHHhhhhh
Q 036820          510 KSLETDLEEATKSLDEMNRNALELS---KNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQER  586 (651)
Q Consensus       510 k~Le~dLeeaT~SldEmn~~~~~LS---~~Le~ans~issle~eKevL~ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ER  586 (651)
                      ..||.|||.+...|.+.+...-.-.   ...+..+.||..||+|-+-..+.|.+-...-.+|-...+..-.-|..|..+|
T Consensus        45 ~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~  124 (143)
T PF12718_consen   45 QQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQER  124 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhH
Confidence            3466666666666666655544333   3466899999999999999999999999999999999999999999999999


Q ss_pred             hhhhHhhhhhHHHHhhcc
Q 036820          587 KSLDKRSKKLEEELASAK  604 (651)
Q Consensus       587 E~~e~r~kkLEeELAsAK  604 (651)
                      ..+|.|.--|+.-+..||
T Consensus       125 ~~~E~k~eel~~k~~~~k  142 (143)
T PF12718_consen  125 DQWEEKYEELEEKYKEAK  142 (143)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            999999999988887765

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.63  E-value=16  Score=45.38  Aligned_cols=168  Identities=18%  Similarity=0.228  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHH
Q 036820          132 KDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEE  211 (651)
Q Consensus       132 edFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~e  211 (651)
                      +........-|.++.+|.......+..|-+.+.++...-..+..+...+...+...-.++.++++.+..++...+.+...
T Consensus       436 e~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~  515 (1293)
T KOG0996|consen  436 EKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSR  515 (1293)
T ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555566666666655555666677777777777777777777777777777777777777777777777766666


Q ss_pred             HHHhhhhHHhhhhhhhhhhhhh-------hhhhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHH
Q 036820          212 RKQKLDRIEGLQDKINLLSLEL-------REKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKL  284 (651)
Q Consensus       212 LeeKl~~i~~Lq~kinLLs~e~-------~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~  284 (651)
                      -..-+..++-|+.++--.+..+       .+....+..+.-.+.+++.++..+...  +..+++.++.+...-.++..-+
T Consensus       516 ~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e--~~~~~~~~~~~rqrveE~ks~~  593 (1293)
T KOG0996|consen  516 HETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKE--ERNLKSQLNKLRQRVEEAKSSL  593 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666665544443       344444444444555566555555443  2245555555555555555555


Q ss_pred             HHHHHHHHHhhhchhhh
Q 036820          285 EAVQKEYKELKLSSENE  301 (651)
Q Consensus       285 ~~l~key~~lk~ssE~~  301 (651)
                      +.-...-..|++-...+
T Consensus       594 ~~~~s~~kVl~al~r~k  610 (1293)
T KOG0996|consen  594 SSSRSRNKVLDALMRLK  610 (1293)
T ss_pred             HhhhhhhHHHHHHHHHH
Confidence            54444444444444333

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=94.62  E-value=11  Score=43.21  Aligned_cols=250  Identities=19%  Similarity=0.216  Sum_probs=156.9

Q ss_pred             HHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhh-hhh
Q 036820          189 IEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQN-ELN  267 (651)
Q Consensus       189 ~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt-~Ln  267 (651)
                      +...+.+..-..|=+.+..+..++.+|=+.|+.||.++.-|.-++..+..++..+----+++|.=.++|+.|-.|. .|-
T Consensus       316 ~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~  395 (622)
T COG5185         316 NYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLT  395 (622)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            3344455556667788889999999999999999999999999999999999998888899999999999987776 232


Q ss_pred             hhhhhhHhcccchHHHHHHHHHHHHHhhhchhh---------hhhhhhhhhh------H------------------hHH
Q 036820          268 ARASSLLVERDDSKQKLEAVQKEYKELKLSSEN---------ETASNAKRLR------E------------------KKE  314 (651)
Q Consensus       268 ~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~---------~aa~da~lL~------e------------------ke~  314 (651)
                      .-|-+   -+-++..-++.+.|-+-++++.-..         .+.-|+.|-.      .                  +-+
T Consensus       396 k~V~~---~~leaq~~~~slek~~~~~~sl~~~i~~~~~~i~~~~nd~~l~iN~E~~~~~~sg~~~~I~~~i~eln~~i~  472 (622)
T COG5185         396 KSVKS---RKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQ  472 (622)
T ss_pred             HHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhhcCCCCceeeccccCCccccCchHhHHHHHHHHhHHHH
Confidence            22221   2223444455555555554433221         1112222211      1                  111


Q ss_pred             HHHHHHHHHHHHHhHhhhc-hhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHH-HhhHHHHHhhhhhhhHHHHHHHHHHh-
Q 036820          315 ELHQLKEKLELTLDEACEN-RATIAKFTQEKDDLRKMLDNELGNVKNLKYEL-QITQETLETTRNEASDLEKQLKQSKD-  391 (651)
Q Consensus       315 ~l~qLeekl~~Al~e~~k~-~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~l-q~Tqe~L~~sR~e~s~L~~~L~~~~~-  391 (651)
                      ..-.-+++=+..|.+..++ ..+|++||++++.    +..++.-+.++=.+. +..++-+.++|.|.-+|+.+|++++- 
T Consensus       473 ~~~~~e~nksi~Lee~i~~~~~~i~El~~~l~~----~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~lnL~  548 (622)
T COG5185         473 ERIKTEENKSITLEEDIKNLKHDINELTQILEK----LELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLNLL  548 (622)
T ss_pred             HHHHHHhccceeHHHHhhhHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            1112233334445555554 4578888888765    456666666655544 44566788999999999999998764 


Q ss_pred             ---hhhHHHHHHHHHHHHHHHHHHHHhcchHHH-HhhhhhhhhhHHhHHHHHHHhHHHH
Q 036820          392 ---SCADLETEISRIRAEFAEVKHTLGNSLDEA-KRSGEVLAGELFAAKEVLKKASEEL  446 (651)
Q Consensus       392 ---~~~~L~~qiskl~~E~~e~ke~l~~~l~ea-k~~~~~Ls~El~s~ke~l~k~~eeL  446 (651)
                         +-.+++.-|....-++.+.+..+-++-.+- |+|.- .-++....|=.++-+=|+|
T Consensus       549 s~ts~l~~eq~vqs~~i~ld~~~~~~n~~r~~i~k~V~~-v~~~~~~fk~~IQssledl  606 (622)
T COG5185         549 SKTSILDAEQLVQSTEIKLDELKVDLNRKRYKIHKQVIH-VIDITSKFKINIQSSLEDL  606 (622)
T ss_pred             ccchHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhHHhhHHHH
Confidence               345677777777777777777766654443 23332 2345555555554444443

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=94.51  E-value=18  Score=45.28  Aligned_cols=57  Identities=18%  Similarity=0.230  Sum_probs=37.5

Q ss_pred             HhHHHHHhhhHHHhhchHHHHHHHHHhhhhhhhhhHhhhhhHHHHhhcccchhhhhhcccc
Q 036820          556 KSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINS  616 (651)
Q Consensus       556 ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ERE~~e~r~kkLEeELAsAKGEiLrLR~qi~s  616 (651)
                      +-.+|.++...+|++-+.|-++|    ..+-++-+++.--.+-|||--.+++=+++.-|+-
T Consensus      1693 ~L~~eA~~Ll~~a~~kl~~l~dL----e~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~~ 1749 (1758)
T KOG0994|consen 1693 QLRTEAEKLLGQANEKLDRLKDL----ELEYLRNEQALEDKAAELAGLEKRVESVLDHINE 1749 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            33455555566666666554443    4445666677777788888888888888877763

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=94.48  E-value=13  Score=43.48  Aligned_cols=119  Identities=21%  Similarity=0.346  Sum_probs=74.1

Q ss_pred             hHhhhhhh--hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhch
Q 036820          257 LNSVYKQN--ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENR  334 (651)
Q Consensus       257 L~~~y~qt--~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~  334 (651)
                      +-+.|++-  -.+..|+-++.+-..+...|-.++.+...|.-.- +.|.++..+  .|-+.++++...|-.      |+ 
T Consensus       222 ~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql-~~~N~~~~~--~~~~~i~~~~~~L~~------kd-  291 (629)
T KOG0963|consen  222 LKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQL-AKANSSKKL--AKIDDIDALGSVLNQ------KD-  291 (629)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhhhhhh--ccCCchHHHHHHHhH------HH-
Confidence            33444443  5566788888888899999999988888775432 223333333  144667777666654      33 


Q ss_pred             hHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHH
Q 036820          335 ATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQ  388 (651)
Q Consensus       335 ~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~  388 (651)
                      .+|+.|+.+++.+++-+..|.++++   ..|+.-+.-+...+.+.-.+.++|+.
T Consensus       292 ~~i~~L~~di~~~~~S~~~e~e~~~---~qI~~le~~l~~~~~~leel~~kL~~  342 (629)
T KOG0963|consen  292 SEIAQLSNDIERLEASLVEEREKHK---AQISALEKELKAKISELEELKEKLNS  342 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4678888888888887777766554   34444455555555555555555543

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=94.36  E-value=5.7  Score=42.44  Aligned_cols=53  Identities=15%  Similarity=0.212  Sum_probs=45.9

Q ss_pred             hhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhh
Q 036820          305 NAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGN  357 (651)
Q Consensus       305 da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~  357 (651)
                      +...+..-..+|.+++.++.........+|-.|..+..+++.+++.|+.|+..
T Consensus       252 ~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~  304 (444)
T TIGR03017       252 ANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKK  304 (444)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556777889999999999988888999999999999999999999988754

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=94.32  E-value=3.9  Score=47.03  Aligned_cols=194  Identities=14%  Similarity=0.146  Sum_probs=106.3

Q ss_pred             hhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhh--hhhhhhhhhhHhcccchHHHHHHHHHHHHH
Q 036820          216 LDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQ--NELNARASSLLVERDDSKQKLEAVQKEYKE  293 (651)
Q Consensus       216 l~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~q--t~Ln~~v~sL~~ek~~~~~k~~~l~key~~  293 (651)
                      ...++-|+++|.-+.+++...|..++.+-..=.-.  .-++ ..++++  ++||.++...-.+...++.+++.+...-..
T Consensus       193 ~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~--~~~~-~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~  269 (754)
T TIGR01005       193 TAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLL--MGNN-ATLATQQLAELNTELSRARANRAAAEGTADSVKKALQN  269 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc--ccCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33456666666666666666666665543211000  0010 011111  255555555555555555555555444332


Q ss_pred             hhhchhhhhh-----hhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhh-hhhHHHHHh
Q 036820          294 LKLSSENETA-----SNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNV-KNLKYELQI  367 (651)
Q Consensus       294 lk~ssE~~aa-----~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~-k~L~~~lq~  367 (651)
                      -+....--..     .+..++.+-..++-+++.++......-..++-.|.++..+++++++-+..|+..+ ..+..+++.
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~  349 (754)
T TIGR01005       270 GGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADA  349 (754)
T ss_pred             CCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111000000     0114556666677777777777777788899999999999999999999998875 445555555


Q ss_pred             hHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 036820          368 TQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGN  416 (651)
Q Consensus       368 Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~  416 (651)
                      .+......+..+.++..++....    ..+.+...|+-|..-.++.|..
T Consensus       350 a~~~~~~L~~~l~~~~~~~~~~~----~~~~e~~~L~Re~~~~~~~Y~~  394 (754)
T TIGR01005       350 AQARESQLVSDVNQLKAASAQAG----EQQVDLDALQRDAAAKRQLYES  394 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCc----HhHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555544443322    2355555666666555554443

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF13514 AAA_27: AAA domain

Probab=94.30  E-value=17  Score=44.24  Aligned_cols=144  Identities=22%  Similarity=0.291  Sum_probs=95.4

Q ss_pred             HHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHH--------HhhhhhHHHHHHHHHHhhhhHHhhhhh
Q 036820          154 EEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSL--------LKFGEDKRTLEEERKQKLDRIEGLQDK  225 (651)
Q Consensus       154 EeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssL--------sqAEedkd~Ae~eLeeKl~~i~~Lq~k  225 (651)
                      .....+..++..+...+......+..+..-++.....-..+...+        ..+...++.+ ..+.+.+..+..++.+
T Consensus       673 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~l-~~l~~~~~~~~~~~~r  751 (1111)
T PF13514_consen  673 ARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALAELGLPADASPEEALEALELL-EELREALAEIRELRRR  751 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            344555566666666666666666666666666555555333222        2222233333 3688888899999999


Q ss_pred             hhhhhhhhhhhhhhhhhhhhhhhh------hHHHhhhhHhhhhhh--------hhhhhhhhhHhcccchHHHHHHHHHHH
Q 036820          226 INLLSLELREKDDGVQKLSSSLQQ------KETELKNLNSVYKQN--------ELNARASSLLVERDDSKQKLEAVQKEY  291 (651)
Q Consensus       226 inLLs~e~~~Ke~~i~~l~SsLa~------KE~e~~nL~~~y~qt--------~Ln~~v~sL~~ek~~~~~k~~~l~key  291 (651)
                      |.-+..++..-+..+..|-..+..      -...+..|...+.+.        .+..++..+-.+......++..+..++
T Consensus       752 i~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l  831 (1111)
T PF13514_consen  752 IEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERERLQEQLEELEEELEQAEEELEELEAEL  831 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998888777654      134566666666555        566667777777777888888888888


Q ss_pred             HHhhhch
Q 036820          292 KELKLSS  298 (651)
Q Consensus       292 ~~lk~ss  298 (651)
                      ..|-...
T Consensus       832 ~~L~~~a  838 (1111)
T PF13514_consen  832 AELLEQA  838 (1111)
T ss_pred             HHHHHhc
Confidence            7775533

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=94.18  E-value=7.4  Score=39.60  Aligned_cols=214  Identities=18%  Similarity=0.284  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhh
Q 036820          313 KEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDS  392 (651)
Q Consensus       313 e~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~  392 (651)
                      ...++.+..+|..-.+..+..+..|..+..++.++-.=+++=...+......-+..........+.+.+|......+...
T Consensus        23 ~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~  102 (264)
T PF06008_consen   23 LSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDN  102 (264)
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444443333332222223333333333344444444555555555555555


Q ss_pred             hhHHHHHHHHHHH------------HHHHHHHHHh----cchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHH
Q 036820          393 CADLETEISRIRA------------EFAEVKHTLG----NSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEAT  456 (651)
Q Consensus       393 ~~~L~~qiskl~~------------E~~e~ke~l~----~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~  456 (651)
                      -+++..++..+-.            .+.+++..|.    |.+..-++.+   -.|+..+..+|.+.+..++.--.+....
T Consensus       103 i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~A---e~El~~A~~LL~~v~~~~~~~~~~~~~l  179 (264)
T PF06008_consen  103 IQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRDFTPQRQNA---EDELKEAEDLLSRVQKWFQKPQQENESL  179 (264)
T ss_pred             HHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhccchhHHHHH---HHHHHHHHHHHHHHHHHHhhHHHhhHHH
Confidence            5555444433322            3333333322    1222222222   3577777788888777775444444433


Q ss_pred             ----HHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhh
Q 036820          457 ----AENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRN  529 (651)
Q Consensus       457 ----~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~  529 (651)
                          ...-....-.|-|++.-+..+.+-..+=-.++.--..-|+.+.++...-++-+......|.+|...|++.|.-
T Consensus       180 ~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~a~~~L~~a~~l  256 (264)
T PF06008_consen  180 AEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETLKEAEDLLDQANDL  256 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                2333444567888888888887777766666666667788889999999999999999999999999887753

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=94.01  E-value=11  Score=43.77  Aligned_cols=176  Identities=22%  Similarity=0.337  Sum_probs=118.4

Q ss_pred             HHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHH----HHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHh
Q 036820          436 KEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATAN----DLKEQKEIVSSLNKELQALEKQTSKDKEARKS  511 (651)
Q Consensus       436 ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~----eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~  511 (651)
                      -+-+.|-+.-++..++-+......-+.....|++-|..++....    +..+.-.-+..+-.+.+.++..+....|..+.
T Consensus       393 e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~q  472 (594)
T PF05667_consen  393 EENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQ  472 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456777777888888888888888889999999999887544    33444456778888999999999999999999


Q ss_pred             HHHhHHHHhhhHHHhhhhHHH-----HhHHHhhhhhccccchhHHHHHHHh---HHHHHhh---------hHHHhhchHH
Q 036820          512 LETDLEEATKSLDEMNRNALE-----LSKNLEKANSQISNLEDEKAVLYKS---LTEQKSI---------ANESRENMED  574 (651)
Q Consensus       512 Le~dLeeaT~SldEmn~~~~~-----LS~~Le~ans~issle~eKevL~ks---l~eqk~~---------t~EAqeN~eD  574 (651)
                      |..+++...+.   +||++..     +-+...+-+.-|..+-.+-..|++-   ++.+-..         -++|+.+ +-
T Consensus       473 L~~e~e~~~k~---~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAKkD-e~  548 (594)
T PF05667_consen  473 LVKELEKLPKD---VNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDAKKD-EA  548 (594)
T ss_pred             HHHHHHhCCCC---CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcC-HH
Confidence            99999999988   8888752     3333333334444444444344332   2222222         2344433 45


Q ss_pred             HHHHHHHhhhhhhhhhHhhhhhHHHHhhcccchhhhhhcccc
Q 036820          575 AHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINS  616 (651)
Q Consensus       575 A~nli~~Lg~ERE~~e~r~kkLEeELAsAKGEiLrLR~qi~s  616 (651)
                      ++...+-|-.=++.|+.=....| +-++..-||-.|=.||..
T Consensus       549 ~rkaYK~La~lh~~c~~Li~~v~-~tG~~~rEirdLe~qI~~  589 (594)
T PF05667_consen  549 ARKAYKLLASLHENCSQLIETVE-ETGTISREIRDLEEQIDT  589 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHH
Confidence            66777777777777777666664 456666677777777654

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=93.88  E-value=18  Score=42.90  Aligned_cols=171  Identities=19%  Similarity=0.237  Sum_probs=128.4

Q ss_pred             hhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH---HHHHhcchHHHHhhhhhhhhhH
Q 036820          356 GNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEV---KHTLGNSLDEAKRSGEVLAGEL  432 (651)
Q Consensus       356 ~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~---ke~l~~~l~eak~~~~~Ls~El  432 (651)
                      .+.+-|..+++++-.+.++.-....+|-.||.+.-+-|-.|-.+--+.+.+.+..   +..|...+-..+.....+-..+
T Consensus       447 ~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i  526 (698)
T KOG0978|consen  447 KNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKI  526 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455778888999999999999999999999999999999988877776666554   4455666777788888888888


Q ss_pred             HhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHhH
Q 036820          433 FAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSL  512 (651)
Q Consensus       433 ~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~L  512 (651)
                      ....|.++..+......+.++..-+..-..+++..+|+=+.++-..-++-.=-+.+.-+-..+.++.--+..++.-|+-|
T Consensus       527 ~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rl  606 (698)
T KOG0978|consen  527 GKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRL  606 (698)
T ss_pred             HHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88899999999988889999988888888888888888887776665555444455555555555555555666666666


Q ss_pred             HHhHHHHhhhHHHh
Q 036820          513 ETDLEEATKSLDEM  526 (651)
Q Consensus       513 e~dLeeaT~SldEm  526 (651)
                      |.+++..-+=|..+
T Consensus       607 eEE~e~L~~kle~~  620 (698)
T KOG0978|consen  607 EEELERLKRKLERL  620 (698)
T ss_pred             HHHHHHHHHHHHHh
Confidence            66666544444333

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=93.81  E-value=11  Score=40.49  Aligned_cols=82  Identities=20%  Similarity=0.278  Sum_probs=43.6

Q ss_pred             hhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 036820          334 RATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHT  413 (651)
Q Consensus       334 ~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~  413 (651)
                      +.-|+.|+.|+..-..=...==+.|-+|--.+--.|..++..-.|--+|...|..++.....|..++..|++-..|+-..
T Consensus       212 n~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~m  291 (306)
T PF04849_consen  212 NQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAM  291 (306)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666665543333333334444555555555555555555555666666666666655555555555555555444


Q ss_pred             Hh
Q 036820          414 LG  415 (651)
Q Consensus       414 l~  415 (651)
                      |.
T Consensus       292 L~  293 (306)
T PF04849_consen  292 LH  293 (306)
T ss_pred             HH
Confidence            43

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=93.14  E-value=9.5  Score=40.57  Aligned_cols=100  Identities=24%  Similarity=0.332  Sum_probs=75.4

Q ss_pred             HhHHHhHHHHhhhHHHhhhhHHHHhHHHhhhhhccccchhHHHHHHHhHHHHHhhhHHHhhchHHHHHHHHHhhhhhhhh
Q 036820          510 KSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSL  589 (651)
Q Consensus       510 k~Le~dLeeaT~SldEmn~~~~~LS~~Le~ans~issle~eKevL~ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ERE~~  589 (651)
                      +++...|++|...|++.+..--..-.+|...+.++..|+.+-+-..+--..-.......+..++-|..||..||.|+...
T Consensus       217 ~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW  296 (344)
T PF12777_consen  217 EPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERW  296 (344)
T ss_dssp             CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhH
Confidence            35667777777777777776666667777777777777776654443333333444556678999999999999999999


Q ss_pred             hHhhhhhHHHHhhcccchhh
Q 036820          590 DKRSKKLEEELASAKGEILR  609 (651)
Q Consensus       590 e~r~kkLEeELAsAKGEiLr  609 (651)
                      ......|++.+..--|.+|=
T Consensus       297 ~~~~~~l~~~~~~l~GD~ll  316 (344)
T PF12777_consen  297 SEQIEELEEQLKNLVGDSLL  316 (344)
T ss_dssp             HCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccHHHHHH
Confidence            99999999999988887763

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=92.87  E-value=26  Score=41.83  Aligned_cols=124  Identities=22%  Similarity=0.253  Sum_probs=90.5

Q ss_pred             HhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHH--HHHHHhHHHHHHHHHHHHHHHHh
Q 036820          119 RLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGL--GKELQNEKRFIEELRIEIDSLQT  196 (651)
Q Consensus       119 kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL--~keLqnek~tVEdlk~eIeql~s  196 (651)
                      +-|.++.+++++..+|-.|+...+..|--+.+    ++.+|--+..+++.-+..-  ..+|..-++.|..+..+=+++--
T Consensus       392 ~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~k----ERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK  467 (961)
T KOG4673|consen  392 KRKSNESEVSSLREEYHQRVATLEKKVQALTK----ERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSK  467 (961)
T ss_pred             HHHhhcccccchHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHH
Confidence            45678889999999999999998888766653    4555555555555444322  14677777888888888888877


Q ss_pred             HHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHH
Q 036820          197 SLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETE  253 (651)
Q Consensus       197 sLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e  253 (651)
                      ..-.-..+|..++.+.++-=..+.-+-++|.+|+.|.       +.|-+.|.-||.-
T Consensus       468 ~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~-------~~lk~il~~Kee~  517 (961)
T KOG4673|consen  468 KQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEE-------NKLKSILRDKEET  517 (961)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHH-------HHHHHHhhhHHHH
Confidence            7777788999999988887777777778888887765       3466777777653

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=92.59  E-value=13  Score=37.79  Aligned_cols=44  Identities=16%  Similarity=0.310  Sum_probs=24.0

Q ss_pred             HHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhh
Q 036820          336 TIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEA  379 (651)
Q Consensus       336 ~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~  379 (651)
                      .+++.+-.+.|++..|+.=...++.--+....-+.+|++.-..+
T Consensus       186 ~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~  229 (264)
T PF06008_consen  186 DLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKK  229 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666666666666666655555554455444444444433333

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=92.46  E-value=14  Score=37.71  Aligned_cols=152  Identities=23%  Similarity=0.314  Sum_probs=109.9

Q ss_pred             hHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHH
Q 036820          108 ATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEEL  187 (651)
Q Consensus       108 a~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdl  187 (651)
                      .+..++..|..=..+-|.+|.-|-.+.+..-...+..+.+++    .+...+..-|+++......+-.++.+.+..++..
T Consensus        34 e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~----~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~  109 (207)
T PF05010_consen   34 ELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLL----KERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGY  109 (207)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHH----hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            455666777777777788887777777666444455555544    4566777888888888888888888777776655


Q ss_pred             -------HHHHHHHHhHHHhhhhhHHHHHHHHHHhhhh----HHhh----hhhhhhhhhhhhhhhhhhhhhhhhhhhhHH
Q 036820          188 -------RIEIDSLQTSLLKFGEDKRTLEEERKQKLDR----IEGL----QDKINLLSLELREKDDGVQKLSSSLQQKET  252 (651)
Q Consensus       188 -------k~eIeql~ssLsqAEedkd~Ae~eLeeKl~~----i~~L----q~kinLLs~e~~~Ke~~i~~l~SsLa~KE~  252 (651)
                             +..+.....+|...+.-.+.+..--++||+.    |+-+    +.-+--|.-.|+--+-.+++|..+|..|..
T Consensus       110 k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~k  189 (207)
T PF05010_consen  110 KKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTK  189 (207)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   5667777777777777777777777777764    3322    333455777777788888899999999998


Q ss_pred             HhhhhHhhhhh
Q 036820          253 ELKNLNSVYKQ  263 (651)
Q Consensus       253 e~~nL~~~y~q  263 (651)
                      |...|-.|++.
T Consensus       190 En~ELtkICDe  200 (207)
T PF05010_consen  190 ENEELTKICDE  200 (207)
T ss_pred             HHHHHHHHHHH
Confidence            88888888763

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=92.34  E-value=26  Score=40.53  Aligned_cols=70  Identities=21%  Similarity=0.216  Sum_probs=39.6

Q ss_pred             HHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhh
Q 036820          165 SANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELR  234 (651)
Q Consensus       165 SLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~  234 (651)
                      ..-..+..+.-++.-++..+..+..+...++..+......+..++..|....-.--.+|.+++-|-.+|.
T Consensus       145 ~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~  214 (546)
T KOG0977|consen  145 DYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELA  214 (546)
T ss_pred             HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            3344444555555555555555666666666666666666666666666555544555555555555444

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.28  E-value=28  Score=40.74  Aligned_cols=228  Identities=22%  Similarity=0.264  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhh--------hhhhHHHHH
Q 036820          314 EELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTR--------NEASDLEKQ  385 (651)
Q Consensus       314 ~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR--------~e~s~L~~~  385 (651)
                      .++..|.++|..+-.+..+.-.-=-.|-.|+.+++.-++.==.-..+.+++|..|++||..+|        +....=+--
T Consensus        15 ~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesL   94 (772)
T KOG0999|consen   15 QEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESL   94 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHH


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHh----------HHHHHHHhHHHHHhhhHHHHH
Q 036820          386 LKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFA----------AKEVLKKASEELQNVSHELEA  455 (651)
Q Consensus       386 L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s----------~ke~l~k~~eeL~~~S~eL~~  455 (651)
                      |+++-.--..+-.+|-++++|+...++.|++.-.+-++...+-+++..+          +|+-|+..+.-=.-+-.+-..
T Consensus        95 LqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSE  174 (772)
T KOG0999|consen   95 LQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSE  174 (772)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHHHhH
Q 036820          456 TAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSK  535 (651)
Q Consensus       456 ~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~  535 (651)
                      .-|.+=+||| .|-..+---+--.-|+-|   +.-|..|.+-|-.|+--+---+.--+..|+||..-|.-=-.--..|-+
T Consensus       175 LEEENIsLQK-qVs~LR~sQVEyEglkhe---ikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkk  250 (772)
T KOG0999|consen  175 LEEENISLQK-QVSNLRQSQVEYEGLKHE---IKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNALKK  250 (772)
T ss_pred             HHHhcchHHH-HHHHHhhhhhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH


Q ss_pred             HHhhhhhccc
Q 036820          536 NLEKANSQIS  545 (651)
Q Consensus       536 ~Le~ans~is  545 (651)
                      +|+-.-+..+
T Consensus       251 EL~q~~n~e~  260 (772)
T KOG0999|consen  251 ELSQYRNAED  260 (772)
T ss_pred             HHHHhcchhh

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=92.21  E-value=0.041  Score=62.92  Aligned_cols=23  Identities=17%  Similarity=0.120  Sum_probs=0.0

Q ss_pred             hHhHHHHHHHHHHHhhhhHHHHH
Q 036820          106 KKATDATLEYMKARLKEKEAAIV  128 (651)
Q Consensus       106 kka~~~tiesm~~kL~e~Eaa~~  128 (651)
                      ...+.+-++.+...+-+.|++..
T Consensus       241 ~~~l~~ql~~L~~el~~~e~~~~  263 (713)
T PF05622_consen  241 LADLRAQLRRLREELERLEEQRD  263 (713)
T ss_dssp             -----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666666666666665543

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=92.11  E-value=32  Score=41.01  Aligned_cols=168  Identities=21%  Similarity=0.288  Sum_probs=103.9

Q ss_pred             CchhhHHHHHhhhhhhhHh---HHHHHHHHHHHhhhhHHHHHhhHHHH-----HH-----HHHHHHHHHHHHHHHhHHHh
Q 036820           90 PRSGVLGALYALTQNEKKA---TDATLEYMKARLKEKEAAIVSLEKDF-----ES-----KLQNEQEQRTKQLKSAKEEQ  156 (651)
Q Consensus        90 p~sGvlg~Ly~l~q~ekka---~~~tiesm~~kL~e~Eaa~~~lDedF-----Ek-----RLKevQeeVkkLLKk~kEee  156 (651)
                      |.|-+..-||-=+-+=|.-   .++-+--=+.||-|+-..|...+++.     +.     +|.+.-.+..+|++.    .
T Consensus        75 ~ms~LySKL~~EaEKIk~WKv~vesd~~qKErkLqenrk~IEaqrKaIqELQf~NE~lSlKLee~i~en~dL~k~----n  150 (786)
T PF05483_consen   75 PMSRLYSKLYKEAEKIKKWKVQVESDLKQKERKLQENRKIIEAQRKAIQELQFENEKLSLKLEEEIQENKDLRKE----N  150 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhHHHHHHh----h
Confidence            5666777777666554443   33444555677888888887776652     22     122222223333321    1


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHH-----------hhhhhHHHHHHHHHHhhhhHHhhhhh
Q 036820          157 QLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLL-----------KFGEDKRTLEEERKQKLDRIEGLQDK  225 (651)
Q Consensus       157 QSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLs-----------qAEedkd~Ae~eLeeKl~~i~~Lq~k  225 (651)
                      .+.=..-|-++.|-.-.-..++....--++|..-...+-++|.           +|+++-..+.-+|+|.+.-|+.|+++
T Consensus       151 naTR~lCNlLKeT~~rsaEK~~~yE~EREET~qly~~l~~niekMi~aFEeLR~qAEn~r~EM~fKlKE~~~k~~~leee  230 (786)
T PF05483_consen  151 NATRHLCNLLKETCQRSAEKMKKYEYEREETRQLYMDLNENIEKMIAAFEELRVQAENDRQEMHFKLKEDYEKFEDLEEE  230 (786)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            1122223333344433333333333334445444444444443           45555556667899999999999998


Q ss_pred             hhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhh
Q 036820          226 INLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQN  264 (651)
Q Consensus       226 inLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt  264 (651)
                      .   -.++++||+.|--|-..+..||.+++.|..-+..|
T Consensus       231 y---~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es  266 (786)
T PF05483_consen  231 Y---KKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQES  266 (786)
T ss_pred             H---HHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Confidence            5   57999999999999999999999999999888777

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=91.67  E-value=15  Score=38.91  Aligned_cols=54  Identities=26%  Similarity=0.469  Sum_probs=25.7

Q ss_pred             hhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 036820          358 VKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVK  411 (651)
Q Consensus       358 ~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~k  411 (651)
                      +..++.+|......+...|.++.++..++..++.-...+..+++.+.++.+++.
T Consensus       211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~  264 (325)
T PF08317_consen  211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE  264 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444444444444444443

>KOG1103 consensus Predicted coiled-coil protein [Function unknown]

Probab=91.63  E-value=8.3  Score=42.73  Aligned_cols=76  Identities=16%  Similarity=0.293  Sum_probs=64.2

Q ss_pred             hhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhH
Q 036820          376 RNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSH  451 (651)
Q Consensus       376 R~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~  451 (651)
                      ...++++.+++---|.---+-++||.|+..||..-++-|.-+++-.+.--+.|-.|..++|++++--..++|..+-
T Consensus       219 ksr~~k~eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~p  294 (561)
T KOG1103|consen  219 KSRTKKGEEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRP  294 (561)
T ss_pred             ccccCCChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc
Confidence            3346677777766666666788999999999999999999999999999999999999999999988877776553

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=91.44  E-value=38  Score=40.56  Aligned_cols=291  Identities=27%  Similarity=0.335  Sum_probs=168.2

Q ss_pred             HHhhhhHhhhhhh--hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHH---HHHHHH
Q 036820          252 TELKNLNSVYKQN--ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLK---EKLELT  326 (651)
Q Consensus       252 ~e~~nL~~~y~qt--~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLe---ekl~~A  326 (651)
                      .++-.|..-|.|-  .|--+|+.++-++|-++.++..|.++..         ++....+|.|||..|++|-   |||+.-
T Consensus       398 s~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela---------~~l~~DeLaEkdE~I~~lm~EGEkLSK~  468 (961)
T KOG4673|consen  398 SEVSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELA---------AALLKDELAEKDEIINQLMAEGEKLSKK  468 (961)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HhhhhHHHHHHHHHHHHHHHHHHHhHHH
Confidence            3445566678887  8999999999999999999998888754         4445567899999999985   344421


Q ss_pred             H------------------hHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHh-hHHHHHhhhhhhhHHHHHHH
Q 036820          327 L------------------DEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQI-TQETLETTRNEASDLEKQLK  387 (651)
Q Consensus       327 l------------------~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~-Tqe~L~~sR~e~s~L~~~L~  387 (651)
                      .                  .-.-|+...|-.|..|.+-++..|++-        .+..- -+|+..+--.++-.-.+.+-
T Consensus       469 ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~K--------ee~Ek~~~E~I~k~~ae~~rq~~~~~  540 (961)
T KOG4673|consen  469 QLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDK--------EETEKLLQETIEKHQAELTRQKDYYS  540 (961)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhH--------HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            1                  112344445555555555555555442        11111 13455555555555666666


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHh--cch--HHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhh
Q 036820          388 QSKDSCADLETEISRIRAEFAEVKHTLG--NSL--DEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSL  463 (651)
Q Consensus       388 ~~~~~~~~L~~qiskl~~E~~e~ke~l~--~~l--~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L  463 (651)
                      .++....+|+.+.--+++-|.+++--|+  +.+  |+|..--..|+--+--++.-|+++.--+       +   -.-|-+
T Consensus       541 ~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~a-------a---rrEd~~  610 (961)
T KOG4673|consen  541 NSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQA-------A---RREDMF  610 (961)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H---HHHHHH
Confidence            6777777778888888888888877552  333  3666666677776667777776654322       1   112223


Q ss_pred             hH---HHHHHHHHhHhhHHHHHHHHH-HHHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHH--------
Q 036820          464 RK---ELVNIYKKAEATANDLKEQKE-IVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNAL--------  531 (651)
Q Consensus       464 ~k---EL~d~YKK~E~t~~eL~~ekk-iv~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~--------  531 (651)
                      .-   +|---|.-+|.-.++|..+-- +-.-|=|.+++|..-...-.-|---+|.-|.+-.---.-.-|..+        
T Consensus       611 R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v~~eqgekq  690 (961)
T KOG4673|consen  611 RGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWEREERSLNERLSDSQTLLRINVLEEQGEKQ  690 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHH
Confidence            33   344456666777777776632 223466667776655554444433333333221100000001111        


Q ss_pred             -HHhHHH--hhhhhccccchhHHHHHHHhHHHHHhhhHHHh
Q 036820          532 -ELSKNL--EKANSQISNLEDEKAVLYKSLTEQKSIANESR  569 (651)
Q Consensus       532 -~LS~~L--e~ans~issle~eKevL~ksl~eqk~~t~EAq  569 (651)
                       .|+...  -+..+..|=|+.|---|+++|.+.+|...+-+
T Consensus       691 ElL~~~~~l~s~~~q~sllraE~~~l~~~le~e~nr~~~~~  731 (961)
T KOG4673|consen  691 ELLSLNFSLPSSPIQLSLLRAEQGQLSKSLEKERNRAAENR  731 (961)
T ss_pred             HHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence             111111  12233445578888899999998888766543

>PF14988 DUF4515: Domain of unknown function (DUF4515)

Probab=91.26  E-value=18  Score=36.56  Aligned_cols=177  Identities=26%  Similarity=0.314  Sum_probs=113.8

Q ss_pred             HHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHH---HHH
Q 036820          111 ATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFI---EEL  187 (651)
Q Consensus       111 ~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tV---Edl  187 (651)
                      ..|++|+.+-.+++..|..|++.|...+..++.+...++-.+...-..|=++|..-...+..+.++|+..+.+.   +.-
T Consensus         4 ~~l~yL~~~~~e~~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~q   83 (206)
T PF14988_consen    4 EFLEYLKKKDEEKEKKIEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQ   83 (206)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            46899999999999999999999999999999999999966777777888888888888888888777766554   445


Q ss_pred             HHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhH--HhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHH--hhhhHhhhhh
Q 036820          188 RIEIDSLQTSLLKFGEDKRTLEEERKQKLDRI--EGLQDKINLLSLELREKDDGVQKLSSSLQQKETE--LKNLNSVYKQ  263 (651)
Q Consensus       188 k~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i--~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e--~~nL~~~y~q  263 (651)
                      ..+|..++..+..+       +.+-.+++..+  ..|++|.-| -.++.+  -.|..+. .-+.+|..  .+-|-..- -
T Consensus        84 e~eI~~Le~e~~~~-------~~e~~~~l~~~~~qfl~EK~~L-Eke~~e--~~i~~l~-e~a~~el~~k~~ale~~A-~  151 (206)
T PF14988_consen   84 EREIQTLEEELEKM-------RAEHAEKLQEAESQFLQEKARL-EKEASE--LKILQLG-ERAHKELKKKAQALELAA-K  151 (206)
T ss_pred             HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH-HHHHHH--hhHHHhH-HHhhHHHHHHHHHHHHHH-H
Confidence            55555565555544       44444444333  346777654 111111  1111111 00111100  00000000 0


Q ss_pred             hhhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchh
Q 036820          264 NELNARASSLLVERDDSKQKLEAVQKEYKELKLSSE  299 (651)
Q Consensus       264 t~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE  299 (651)
                      -.+..-..+++.++-...+.|.-+.++|..|.....
T Consensus       152 ~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~  187 (206)
T PF14988_consen  152 KSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKS  187 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            034455677888888888999999999988876543

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.26  E-value=42  Score=40.75  Aligned_cols=101  Identities=24%  Similarity=0.280  Sum_probs=58.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHH
Q 036820          130 LEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLE  209 (651)
Q Consensus       130 lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae  209 (651)
                      +|=.|-+.-+..+.-+.+++....+    +-.+=..+..+++++....+.-++.+-...-+++.++..........+.+.
T Consensus       616 lD~~f~kL~kele~~i~k~ls~~~e----ee~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~  691 (970)
T KOG0946|consen  616 LDFEFKKLFKELEGLIAKLLSSKTE----EEEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELE  691 (970)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCc----cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555522111    111223345566666666666666666666666666666666666666666


Q ss_pred             HHHHHhhhhHHhhhhhhhhhhhhhh
Q 036820          210 EERKQKLDRIEGLQDKINLLSLELR  234 (651)
Q Consensus       210 ~eLeeKl~~i~~Lq~kinLLs~e~~  234 (651)
                      .+++.+...+.-|.+-+++|..++.
T Consensus       692 ~~vq~~~s~hsql~~q~~~Lk~qLg  716 (970)
T KOG0946|consen  692 EEVQDFISEHSQLKDQLDLLKNQLG  716 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6666677777777777777776665

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=91.15  E-value=46  Score=40.98  Aligned_cols=247  Identities=19%  Similarity=0.273  Sum_probs=129.9

Q ss_pred             HHHHHHHHHHHHHHHHHH-------HHhHHHhHHHHHHHHHHHHhHH--HHHHHHHhHHHHHHHHHHHHHHHHhHHHhhh
Q 036820          132 KDFESKLQNEQEQRTKQL-------KSAKEEQQLLMNKLNSANTTIS--GLGKELQNEKRFIEELRIEIDSLQTSLLKFG  202 (651)
Q Consensus       132 edFEkRLKevQeeVkkLL-------Kk~kEeeQSLlDQLnSLnsTLt--SL~keLqnek~tVEdlk~eIeql~ssLsqAE  202 (651)
                      ++|-.++-..|....+.+       +.+++....+..-|.++.++|.  .+.+++..+  ..+.+-.+++.+..++...+
T Consensus       268 qEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEE--RaesLQ~eve~lkEr~dele  345 (1243)
T KOG0971|consen  268 QEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEE--RAESLQQEVEALKERVDELE  345 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence            478888888888877777       2245555566666777777654  566666544  46778888999999999999


Q ss_pred             hhHHHHHHHHHHhhhhHHhh----hhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhccc
Q 036820          203 EDKRTLEEERKQKLDRIEGL----QDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERD  278 (651)
Q Consensus       203 edkd~Ae~eLeeKl~~i~~L----q~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~  278 (651)
                      .|.+.++.+.++|=....+.    =..|.--+..+||-=.++|.||++   --.+.+.++.-..  -.|+.++-|..-+.
T Consensus       346 tdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~---ek~d~qK~~kelE--~k~sE~~eL~r~kE  420 (1243)
T KOG0971|consen  346 TDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSAS---EKQDHQKLQKELE--KKNSELEELRRQKE  420 (1243)
T ss_pred             HHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchH---HHHHHHHHHHHHH--HHhhHHHHHHHHHH
Confidence            99999999999983332111    012333344455555566666654   2223333322111  22333333333333


Q ss_pred             chHHHHHHHHHHHHHhhhchhhhhhhhhh--------hhhHhHHHHHHHHHHHHH--HHhHhh-----hchhHHHhhhhh
Q 036820          279 DSKQKLEAVQKEYKELKLSSENETASNAK--------RLREKKEELHQLKEKLEL--TLDEAC-----ENRATIAKFTQE  343 (651)
Q Consensus       279 ~~~~k~~~l~key~~lk~ssE~~aa~da~--------lL~eke~~l~qLeekl~~--Al~e~~-----k~~~~Ia~L~~e  343 (651)
                      ...++++...-...|||---  -||.-|+        .=.+-++.+.+|+|-...  |+.+..     -|+...-||..|
T Consensus       421 ~Lsr~~d~aEs~iadlkEQV--DAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreE  498 (1243)
T KOG0971|consen  421 RLSRELDQAESTIADLKEQV--DAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREE  498 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333110  0111111        112234444444443321  222221     133344444444


Q ss_pred             HHHH--------------HHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHH
Q 036820          344 KDDL--------------RKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLK  387 (651)
Q Consensus       344 ~~~~--------------r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~  387 (651)
                      +|-+              -.-+-+=-.++++.++.++..++.|.+-+++.+-.++++.
T Consensus       499 ld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Sseees~  556 (1243)
T KOG0971|consen  499 LDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSEEESQ  556 (1243)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhc
Confidence            4433              2222223345666777777777777777777766666554

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=91.04  E-value=13  Score=34.55  Aligned_cols=127  Identities=24%  Similarity=0.331  Sum_probs=82.8

Q ss_pred             hhhhHhHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHH
Q 036820          103 QNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKR  182 (651)
Q Consensus       103 q~ekka~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~  182 (651)
                      ..++..+++.+..+.....+-++.+..+..+-+.--..+++...+--+-..- -...+..|..++..+..+...+...+.
T Consensus         2 ~~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~-Ha~~~~~L~~lr~e~~~~~~~~~~l~~   80 (132)
T PF07926_consen    2 ESELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVK-HAEDIKELQQLREELQELQQEINELKA   80 (132)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4577888888888888888888888888877776655555555553322211 223367777777777777777777777


Q ss_pred             HHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhh
Q 036820          183 FIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLEL  233 (651)
Q Consensus       183 tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~  233 (651)
                      .++.++......+.+   |+.-+..++.++.+--..|+.|..-=+||-..|
T Consensus        81 ~~~~a~~~l~~~e~s---w~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql  128 (132)
T PF07926_consen   81 EAESAKAELEESEAS---WEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL  128 (132)
T ss_pred             HHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777666666655554   666666666666666666666655555554433

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=90.87  E-value=24  Score=37.33  Aligned_cols=83  Identities=22%  Similarity=0.325  Sum_probs=55.5

Q ss_pred             hchhHHHhhhhhHHHHHHHHHHhhhhhhhh-----------------HHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhh
Q 036820          332 ENRATIAKFTQEKDDLRKMLDNELGNVKNL-----------------KYELQITQETLETTRNEASDLEKQLKQSKDSCA  394 (651)
Q Consensus       332 k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L-----------------~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~  394 (651)
                      .|..++.+...-=++.|..+++.+.+||..                 .....+.++.+....++...|...+..+...-.
T Consensus       101 ~nPpLf~EY~~a~~d~r~~m~~q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~  180 (325)
T PF08317_consen  101 SNPPLFREYYTADPDMRLLMDNQFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLP  180 (325)
T ss_pred             cCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345577777666678888888888888753                 334455666666666777777777777666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 036820          395 DLETEISRIRAEFAEVKHTL  414 (651)
Q Consensus       395 ~L~~qiskl~~E~~e~ke~l  414 (651)
                      +|...-..|..|+...++..
T Consensus       181 ~l~~~~~~L~~e~~~Lk~~~  200 (325)
T PF08317_consen  181 KLRERKAELEEELENLKQLV  200 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666555543

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=90.33  E-value=36  Score=38.34  Aligned_cols=65  Identities=23%  Similarity=0.293  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHH---hHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHh
Q 036820          136 SKLQNEQEQRTKQLKS---AKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLK  200 (651)
Q Consensus       136 kRLKevQeeVkkLLKk---~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsq  200 (651)
                      ++|.+.+.++..+-+.   .++..+.|..+|.+++..+..+...+..........+..|..+..++..
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~  105 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNA  105 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence            7888888888877744   3566667777777777777777666666666665555555555555543

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=90.29  E-value=0.22  Score=57.16  Aligned_cols=55  Identities=18%  Similarity=0.363  Sum_probs=0.0

Q ss_pred             HHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHH
Q 036820          336 TIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSK  390 (651)
Q Consensus       336 ~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~  390 (651)
                      -|-.+.++..++...++.+-..+..|..++...++.+.....+...|..+.+..+
T Consensus       364 qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~  418 (713)
T PF05622_consen  364 QLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLR  418 (713)
T ss_dssp             -------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555555555555555555544444444444444333

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=90.14  E-value=22  Score=35.66  Aligned_cols=160  Identities=23%  Similarity=0.334  Sum_probs=91.2

Q ss_pred             HHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhh
Q 036820          351 LDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAG  430 (651)
Q Consensus       351 Ld~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~  430 (651)
                      ..|=+.-+++||.++..-.......+..++++..+-.       .|..-+.+++.|..+.+.-|.. .+.-+       .
T Consensus        22 T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~-------~L~epL~~a~~e~~eL~k~L~~-y~kdK-------~   86 (201)
T PF13851_consen   22 TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENK-------RLSEPLKKAEEEVEELRKQLKN-YEKDK-------Q   86 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHH-HHHHH-------H
Confidence            3445666777777766655555555555555554444       4444444444444444444332 11112       1


Q ss_pred             hHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHH---------HHHHHHHHHHHHHHHHHH
Q 036820          431 ELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKE---------QKEIVSSLNKELQALEKQ  501 (651)
Q Consensus       431 El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~---------ekkiv~tLn~eL~al~~Q  501 (651)
                      -|..+|..++..+.+|.....+-.........+..|-=+.|.+++.+..|..+         ||+ +..|...|+.-+.|
T Consensus        87 ~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkK-l~~l~~~lE~keaq  165 (201)
T PF13851_consen   87 SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKK-LQALSEQLEKKEAQ  165 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            35667777777777777777777777777778888888889999998888755         343 34566666666666


Q ss_pred             hhhhHHHhHhHHHhHHHHhhhHHHh
Q 036820          502 TSKDKEARKSLETDLEEATKSLDEM  526 (651)
Q Consensus       502 ~~~d~EaRk~Le~dLeeaT~SldEm  526 (651)
                      +.---.+=..=-++++.++..++++
T Consensus       166 L~evl~~~nldp~~~~~v~~~l~~~  190 (201)
T PF13851_consen  166 LNEVLAAANLDPAALSQVSKKLEDV  190 (201)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            5532222222223344444444443

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=90.05  E-value=60  Score=40.53  Aligned_cols=56  Identities=7%  Similarity=0.080  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhh
Q 036820          318 QLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTR  376 (651)
Q Consensus       318 qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR  376 (651)
                      +...+|+..|......   +..+.++....+..+|+=-.+..++++.++.-+.++-=+|
T Consensus       265 ~~N~~Ls~~L~~~t~~---~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S~~Lg~  320 (1109)
T PRK10929        265 KINRELSQALNQQAQR---MDLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNALGE  320 (1109)
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence            3455666666665553   4455667777777777777777777777776665554443

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=89.95  E-value=26  Score=36.13  Aligned_cols=163  Identities=21%  Similarity=0.308  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhH---HHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHH
Q 036820          134 FESKLQNEQEQRTKQLKSAK---EEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEE  210 (651)
Q Consensus       134 FEkRLKevQeeVkkLLKk~k---EeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~  210 (651)
                      .+.||...+.+....-+..-   -.-..|-++.......+..+...|.-++-+.+++..+-+.---.+.-.+++...++.
T Consensus        23 aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~ee  102 (205)
T KOG1003|consen   23 AQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEE  102 (205)
T ss_pred             HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            34566666665555554321   123566778888888899999999999999999998888888888888888888888


Q ss_pred             HHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhhhh-----hhhhHhcccchHHHHH
Q 036820          211 ERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNAR-----ASSLLVERDDSKQKLE  285 (651)
Q Consensus       211 eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~-----v~sL~~ek~~~~~k~~  285 (651)
                      ..+--...+.-|.+-+..+.+.++.-+..-+.++-.+-.-+.+++-|..-..+++.+..     |+.|--+.|+.+.++.
T Consensus       103 raE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~  182 (205)
T KOG1003|consen  103 RAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLE  182 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhH
Confidence            88777777777888888888888777777777777777777777777777777765554     9999999999999999


Q ss_pred             HHHHHHHHhhh
Q 036820          286 AVQKEYKELKL  296 (651)
Q Consensus       286 ~l~key~~lk~  296 (651)
                      ...-.|.+++.
T Consensus       183 ~~k~ky~~~~~  193 (205)
T KOG1003|consen  183 EAKEKYEEAKK  193 (205)
T ss_pred             HHHHHHHHHHH
Confidence            99999987653

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=89.56  E-value=48  Score=38.69  Aligned_cols=278  Identities=21%  Similarity=0.231  Sum_probs=146.6

Q ss_pred             hHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhh
Q 036820          152 AKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSL  231 (651)
Q Consensus       152 ~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~  231 (651)
                      +...-..+...+..++.+..++...++    .++.....++-++........|...++.=+..-.+.-..+..+++-|..
T Consensus       226 l~~~~~~i~~~ie~l~~~n~~l~e~i~----e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~  301 (581)
T KOG0995|consen  226 LEKYFTSIANEIEDLKKTNRELEEMIN----EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKS  301 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            333333444444444444444444444    2333333444444444445555556666666666666777888888999


Q ss_pred             hhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhh-hhhhhhHhcccchHHHHHHH-------HHHHHHhhhchhhhhh
Q 036820          232 ELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELN-ARASSLLVERDDSKQKLEAV-------QKEYKELKLSSENETA  303 (651)
Q Consensus       232 e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln-~~v~sL~~ek~~~~~k~~~l-------~key~~lk~ssE~~aa  303 (651)
                      |+..||..++.+.+    ...++++-  +=.| .++ +.|...+.|++...+.|+.|       +|+--++++--+..  
T Consensus       302 Eie~kEeE~e~lq~----~~d~Lk~~--Ie~Q-~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~--  372 (581)
T KOG0995|consen  302 EIEEKEEEIEKLQK----ENDELKKQ--IELQ-GISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDF--  372 (581)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHH--HHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--
Confidence            99999988876543    33344332  1122 111 12444444554444444444       44444333211111  


Q ss_pred             hhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHH--H-HHHhhhhhhhhHHHHHhhHHHHHhhhhhhh
Q 036820          304 SNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRK--M-LDNELGNVKNLKYELQITQETLETTRNEAS  380 (651)
Q Consensus       304 ~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~--m-Ld~E~~~~k~L~~~lq~Tqe~L~~sR~e~s  380 (651)
                      .+  =+--+=-.+|+|=-+|..-...-++|        -++.-.+.  | +|-=-.-..-|+..+-.+++.+..--++..
T Consensus       373 f~--~le~~~~~~~~l~~~i~l~~~~~~~n--------~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~  442 (581)
T KOG0995|consen  373 FK--ELEKKFIDLNSLIRRIKLGIAENSKN--------LERNPERAATNGVDLKSYVKPLLKELLDEISEELHEAENELE  442 (581)
T ss_pred             HH--HHHHHHHHHHHHHHHHHHHHHHHhcc--------CCcCCccCccccccchhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11  01111122333333333331112222        11111110  0 010011123455666677777777777777


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHH
Q 036820          381 DLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHE  452 (651)
Q Consensus       381 ~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~e  452 (651)
                      .|.+-..+.+..-..+...+..+..|+..+-..+..+..+++.....-..|+-++-+.|...+..+.+.-.+
T Consensus       443 tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m~~  514 (581)
T KOG0995|consen  443 TLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSMKE  514 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777777777777777777777777777888888888888877777777666665554433

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=89.31  E-value=62  Score=39.63  Aligned_cols=69  Identities=23%  Similarity=0.356  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhH---HHHHhhh
Q 036820          381 DLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKAS---EELQNVS  450 (651)
Q Consensus       381 ~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~---eeL~~~S  450 (651)
                      -|+....++|..|..++.++.-++.++++.+-..+.+.++.++.-..++ .+-..+..+.|++   ++++.+-
T Consensus       348 ~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~ela-ql~a~r~q~eka~~~~ee~e~~~  419 (980)
T KOG0980|consen  348 QLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELA-QLLASRTQLEKAQVLVEEAENKA  419 (980)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHH
Confidence            4455667889999999999999999999999999999999886555443 3445677888888   6665543

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=89.20  E-value=63  Score=39.56  Aligned_cols=31  Identities=19%  Similarity=0.363  Sum_probs=24.4

Q ss_pred             chhhHHHHHhhhhhhhHhHHHHHHHHHHHhh
Q 036820           91 RSGVLGALYALTQNEKKATDATLEYMKARLK  121 (651)
Q Consensus        91 ~sGvlg~Ly~l~q~ekka~~~tiesm~~kL~  121 (651)
                      |.++++.++-......+.....+..++.+|.
T Consensus       178 g~~~y~~~~~~l~er~k~~~~~l~~l~~~l~  208 (1047)
T PRK10246        178 GTEIYGQISAMVFEQHKSARTELEKLQAQAS  208 (1047)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            7888888887777777778888888887774

>smart00787 Spc7 Spc7 kinetochore protein

Probab=88.96  E-value=17  Score=38.82  Aligned_cols=166  Identities=20%  Similarity=0.268  Sum_probs=104.0

Q ss_pred             chhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 036820          333 NRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKH  412 (651)
Q Consensus       333 ~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke  412 (651)
                      |..++-+-...=++.|.++++.+.+||.-....  ....-=+-|.                     +.      +.-.++
T Consensus        97 nPpLF~EY~~a~~d~r~lm~~Qf~lvK~~aRl~--ak~~WYeWR~---------------------kl------legLk~  147 (312)
T smart00787       97 NPPLFKEYFSASPDVKLLMDKQFQLVKTFARLE--AKKMWYEWRM---------------------KL------LEGLKE  147 (312)
T ss_pred             CcHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH---------------------HH------HHHHHH
Confidence            444555555556788888888888887643321  1111111121                     11      234455


Q ss_pred             HHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhh----hHHHHHHHHHhHhhHHHHHHHHHHH
Q 036820          413 TLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSL----RKELVNIYKKAEATANDLKEQKEIV  488 (651)
Q Consensus       413 ~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L----~kEL~d~YKK~E~t~~eL~~ekkiv  488 (651)
                      +|..+++.-+.--+.|...+..+.+++-...+..+...+++.......+.+    +.||-.+..++-..-.++..-++-+
T Consensus       148 ~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l  227 (312)
T smart00787      148 GLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKL  227 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666666666666666665555555555444444443    4577777777777777887778888


Q ss_pred             HHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhh
Q 036820          489 SSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMN  527 (651)
Q Consensus       489 ~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn  527 (651)
                      .-++.+|+.+...+..-.+-...++..+.+|.+-+++-.
T Consensus       228 ~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r  266 (312)
T smart00787      228 EELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCR  266 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            888888888887777777777777777777777655443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=88.82  E-value=28  Score=34.97  Aligned_cols=79  Identities=24%  Similarity=0.350  Sum_probs=57.3

Q ss_pred             HHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhh----hhhhhHHhHHHHHHHhHH
Q 036820          369 QETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGE----VLAGELFAAKEVLKKASE  444 (651)
Q Consensus       369 qe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~----~Ls~El~s~ke~l~k~~e  444 (651)
                      ...|...+..+..+.++|...+--+..|+..+.++..|..+....+...|.+..+.+.    .|-.-|..+.+.|.+...
T Consensus        85 K~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~kea  164 (201)
T PF13851_consen   85 KQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEA  164 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666666777788888888888888888899999999998888888888887664    355555555555555555


Q ss_pred             HHH
Q 036820          445 ELQ  447 (651)
Q Consensus       445 eL~  447 (651)
                      +|.
T Consensus       165 qL~  167 (201)
T PF13851_consen  165 QLN  167 (201)
T ss_pred             HHH
Confidence            544

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=88.71  E-value=79  Score=40.08  Aligned_cols=140  Identities=21%  Similarity=0.273  Sum_probs=70.1

Q ss_pred             HhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHH-------HHHHHHHHHHHhHHHhhhhhHHHHHHHHHHh---hhhHH
Q 036820          151 SAKEEQQLLMNKLNSANTTISGLGKELQNEKRFI-------EELRIEIDSLQTSLLKFGEDKRTLEEERKQK---LDRIE  220 (651)
Q Consensus       151 k~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tV-------Edlk~eIeql~ssLsqAEedkd~Ae~eLeeK---l~~i~  220 (651)
                      ++++.+..|...+.++..++.-+.+-..++.+..       +.++.-..+...++..++++|..+..=|..+   .++|+
T Consensus      1416 ~A~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~ 1495 (1758)
T KOG0994|consen 1416 MAGDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIE 1495 (1758)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence            3456666666666666666555555444444443       4444444444444444444555444444433   45666


Q ss_pred             hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhhhh-hhhhhhhHhcccchHHHHHHHHHHHH
Q 036820          221 GLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNEL-NARASSLLVERDDSKQKLEAVQKEYK  292 (651)
Q Consensus       221 ~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~L-n~~v~sL~~ek~~~~~k~~~l~key~  292 (651)
                      .+-++|  |-.+|.---+.|+.|.-.+.+-=.-+.|.--|..+|-= -.++.-|..+-..++++-+.+++.-.
T Consensus      1496 ~vA~~v--L~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae 1566 (1758)
T KOG0994|consen 1496 EVAEEV--LALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAE 1566 (1758)
T ss_pred             HHHHHH--HhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            555554  22333333344444444444444445566667777721 13455555555555555544444433

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=88.62  E-value=59  Score=38.55  Aligned_cols=217  Identities=23%  Similarity=0.334  Sum_probs=111.2

Q ss_pred             hhhHHHHHhhHHHHHhhhhhhhHHH-------HHHHHHHhhhhHHHHHHHHHHHHHHHHH---HHHhcchHHHHhhhhhh
Q 036820          359 KNLKYELQITQETLETTRNEASDLE-------KQLKQSKDSCADLETEISRIRAEFAEVK---HTLGNSLDEAKRSGEVL  428 (651)
Q Consensus       359 k~L~~~lq~Tqe~L~~sR~e~s~L~-------~~L~~~~~~~~~L~~qiskl~~E~~e~k---e~l~~~l~eak~~~~~L  428 (651)
                      ++||-+||.-...=.+.|+.++-|.       .+|.+.+.-|..|+..+..|..--..-|   +.|.++|.+...--..+
T Consensus       428 kkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~l  507 (697)
T PF09726_consen  428 KKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASL  507 (697)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666655555555555554433       3466666666666666666555444444   34445554443333333


Q ss_pred             hhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 036820          429 AGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEA  508 (651)
Q Consensus       429 s~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~Ea  508 (651)
                      =..|...|---++..+   ....-++...-.|.    |-           .|--++|  ...|+.|+..|...+..-.|.
T Consensus       508 EkQL~eErk~r~~ee~---~aar~~~~~~~~r~----e~-----------~e~~r~r--~~~lE~E~~~lr~elk~kee~  567 (697)
T PF09726_consen  508 EKQLQEERKARKEEEE---KAARALAQAQATRQ----EC-----------AESCRQR--RRQLESELKKLRRELKQKEEQ  567 (697)
T ss_pred             HHHHHHHHHHHhHHHH---hhhhccccchhccc----hh-----------HHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence            3333333322222111   11111110000000    11           1111222  256667777776666666666


Q ss_pred             hHhHHHhHHHHhhhHHHhhhhHHHHhHHHhhhhhccccchhHHHHHHHhHHHHHhhhH-------HHhhchHHHHHHHHH
Q 036820          509 RKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIAN-------ESRENMEDAHNLVMR  581 (651)
Q Consensus       509 Rk~Le~dLeeaT~SldEmn~~~~~LS~~Le~ans~issle~eKevL~ksl~eqk~~t~-------EAqeN~eDA~nli~~  581 (651)
                      -..||.++.+.-+=-.|.+       ++.|..-+-.+.+.|.-..|-++|.....+-.       +|+..+|.|+..|+.
T Consensus       568 ~~~~e~~~~~lr~~~~e~~-------~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~  640 (697)
T PF09726_consen  568 IRELESELQELRKYEKESE-------KDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRK  640 (697)
T ss_pred             HHHHHHHHHHHHHHHhhhh-------hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6667776643332112322       23445555667788888888888887776543       678888888887765


Q ss_pred             hhhhhhhhhHhhhhhHHHHhhccc
Q 036820          582 LGQERKSLDKRSKKLEEELASAKG  605 (651)
Q Consensus       582 Lg~ERE~~e~r~kkLEeELAsAKG  605 (651)
                        +|+|-.|.+. |+.+=||--=+
T Consensus       641 --~d~ei~~lk~-ki~~~~av~p~  661 (697)
T PF09726_consen  641 --KDKEIEELKA-KIAQLLAVMPS  661 (697)
T ss_pred             --HHHHHHHHHH-HHHHHHhcCCc
Confidence              5666555554 34555554433

; GO: 0016021 integral to membrane

>smart00787 Spc7 Spc7 kinetochore protein

Probab=88.13  E-value=29  Score=37.24  Aligned_cols=192  Identities=19%  Similarity=0.223  Sum_probs=108.3

Q ss_pred             hhhhhheeeccccchhccchhhhcCC---------------------CCchhhHHHHHhhhhhhhHhHHHHHHHHHHHhh
Q 036820           63 RRKTILLVGISVLPLLNLRARALDGL---------------------APRSGVLGALYALTQNEKKATDATLEYMKARLK  121 (651)
Q Consensus        63 ~rr~iL~vgisVLP~L~lr~~A~~~~---------------------~p~sGvlg~Ly~l~q~ekka~~~tiesm~~kL~  121 (651)
                      .--.++-.|..=+|+|-+-..+-.-+                     .|.  +|==.|..+...|...+..+--+++   
T Consensus        50 sl~~~v~A~~~~iP~LElY~~sC~EL~~~I~egr~~~~~~E~et~~~nPp--LF~EY~~a~~d~r~lm~~Qf~lvK~---  124 (312)
T smart00787       50 SLDQYVVAGYCTVPLLELYQFSCKELKKYISEGRDLFKEIEEETLINNPP--LFKEYFSASPDVKLLMDKQFQLVKT---  124 (312)
T ss_pred             CHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH--HHHHHHcCCHHHHHHHHHHHHHHHH---
Confidence            34455666777889988754322111                     143  5555555555555555544443332   


Q ss_pred             hhHHHHHhhHHHHHHHHHHHHHHHHHHHHH---hHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 036820          122 EKEAAIVSLEKDFESKLQNEQEQRTKQLKS---AKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSL  198 (651)
Q Consensus       122 e~Eaa~~~lDedFEkRLKevQeeVkkLLKk---~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssL  198 (651)
                        =|=..+...=|+=|.+-.+--...|...   .+.+...|+.+++-++.-+-.+.........-+..+........+- 
T Consensus       125 --~aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~-  201 (312)
T smart00787      125 --FARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDC-  201 (312)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhC-
Confidence              2233344455666666655555555522   3556666777766666666666666665555555554444443220 


Q ss_pred             HhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhh
Q 036820          199 LKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQN  264 (651)
Q Consensus       199 sqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt  264 (651)
                        --+..+.++.+|.+-...|.....++.-+..++..+...|...+...++-..+++.+..+.++.
T Consensus       202 --d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~  265 (312)
T smart00787      202 --DPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQC  265 (312)
T ss_pred             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence              0124445556666666666666666666666666666666666666666666666666666554

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.02  E-value=40  Score=35.87  Aligned_cols=50  Identities=18%  Similarity=0.236  Sum_probs=27.2

Q ss_pred             hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHH
Q 036820          265 ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKE  314 (651)
Q Consensus       265 ~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~  314 (651)
                      .+|.+.++|..-..+.+.+++.|.++-++++.--=.=++.-++...++..
T Consensus       166 ~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~  215 (265)
T COG3883         166 ALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAA  215 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            56666666666666666666666666655554433333333344344433

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=87.90  E-value=1.5  Score=42.88  Aligned_cols=113  Identities=19%  Similarity=0.320  Sum_probs=37.3

Q ss_pred             HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhh
Q 036820          160 MNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDG  239 (651)
Q Consensus       160 lDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~  239 (651)
                      .....++...+..+..+|......-.+       +..+|..+...+...+.++.++-..|..|+..+.-|...+++.++.
T Consensus        66 ~~~~~~le~~~~~l~~ELael~r~~~e-------l~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~  138 (194)
T PF08614_consen   66 SAQISSLEQKLAKLQEELAELYRSKGE-------LAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEE  138 (194)
T ss_dssp             -------------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccc-------ccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555544444333       3344444444444555566666556666555555555555555555


Q ss_pred             hhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHHHHHHHHHhh
Q 036820          240 VQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKELK  295 (651)
Q Consensus       240 i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk  295 (651)
                      |++.+..+.                .||..+.+|..+.+-.++++..+++|+.+|=
T Consensus       139 l~ek~k~~e----------------~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv  178 (194)
T PF08614_consen  139 LKEKNKANE----------------ILQDELQALQLQLNMLEEKLRKLEEENRELV  178 (194)
T ss_dssp             HHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            544443332                2344445555555666777777777777663

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=87.79  E-value=47  Score=36.38  Aligned_cols=33  Identities=12%  Similarity=0.145  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 036820          158 LLMNKLNSANTTISGLGKELQNEKRFIEELRIE  190 (651)
Q Consensus       158 SLlDQLnSLnsTLtSL~keLqnek~tVEdlk~e  190 (651)
                      .+.+++..++..+.....++...+.....+..+
T Consensus       201 ~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~  233 (498)
T TIGR03007       201 DYYSEISEAQEELEAARLELNEAIAQRDALKRQ  233 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666666666655555555555555443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=87.70  E-value=72  Score=38.43  Aligned_cols=301  Identities=21%  Similarity=0.287  Sum_probs=0.0

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhh
Q 036820          170 ISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQ  249 (651)
Q Consensus       170 LtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~  249 (651)
                      +...++.+..+..++++....++........-......                                       ...
T Consensus       446 ~v~~q~~~s~i~~ILedI~~al~~~~~~~~~~~~~~~~---------------------------------------~~~  486 (769)
T PF05911_consen  446 LVLEQKEVSKISEILEDIEIALDSINNSSNCDDDSEEY---------------------------------------ESM  486 (769)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhccccccccccchh---------------------------------------hhh


Q ss_pred             hHHHhhhhHhhhhhh-hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHh
Q 036820          250 KETELKNLNSVYKQN-ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLD  328 (651)
Q Consensus       250 KE~e~~nL~~~y~qt-~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~  328 (651)
                      .-..+++.++.+..+ +||.-|..+                  .||...=+.-+-.=-.||..+.+.-. .=+.++.+|+
T Consensus       487 ~~sL~e~~~s~~~~s~eL~~avskI------------------sEfv~~LekeVh~C~DLLsgkadLE~-fieE~s~tLd  547 (769)
T PF05911_consen  487 EASLVEESKSMIEISQELNVAVSKI------------------SEFVLVLEKEVHVCQDLLSGKADLER-FIEEFSLTLD  547 (769)
T ss_pred             hhhHHHHHHHHHhhcccHHHHHHhH------------------HHHHHHHHHHHHHHHHHhcchhHHHH-HHHHHHHHHH


Q ss_pred             HhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 036820          329 EACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFA  408 (651)
Q Consensus       329 e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~  408 (651)
                      .+--+..-+.|...+.+.++..++..-..-..+....       ..-......+.++|+.+..--.+|+..+.+.++.+.
T Consensus       548 wIls~~~SLqDv~s~~sEIK~~f~~~ss~e~E~~~~d-------ea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE  620 (769)
T PF05911_consen  548 WILSNCFSLQDVSSMRSEIKKNFDGDSSSEAEINSED-------EADTSEKKELEEELEKLESEKEELEMELASCQDQLE  620 (769)
T ss_pred             HHHHccchHHHHHHHHHHHHHhhhhcccccccccchH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHH
Q 036820          409 EVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIV  488 (651)
Q Consensus       409 e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv  488 (651)
                      ..+-.|    .+++..-..|-.+|.++++-=.....+|+++--...+.--..-.++.|+-.+.-|+.+--.||..||.--
T Consensus       621 ~~~~qL----~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~  696 (769)
T PF05911_consen  621 SLKNQL----KESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALS  696 (769)
T ss_pred             HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc


Q ss_pred             HHHHHHHHHHHHHhhhhHHHhHhH-----------HHhHHHHhhhHHHhhhhHHHHhHHHhh
Q 036820          489 SSLNKELQALEKQTSKDKEARKSL-----------ETDLEEATKSLDEMNRNALELSKNLEK  539 (651)
Q Consensus       489 ~tLn~eL~al~~Q~~~d~EaRk~L-----------e~dLeeaT~SldEmn~~~~~LS~~Le~  539 (651)
                      .-+--.-..|+.|+...+--....           +.+|--|..=|-|-=+--+.|++.|..
T Consensus       697 ~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAECQeTI~sLGkQLks  758 (769)
T PF05911_consen  697 EELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAECQETIASLGKQLKS  758 (769)
T ss_pred             hhhhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh

The function of this family is unknown.

>TIGR00634 recN DNA repair protein RecN

Probab=86.96  E-value=60  Score=36.77  Aligned_cols=68  Identities=13%  Similarity=0.220  Sum_probs=38.2

Q ss_pred             HHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHH
Q 036820          319 LKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSK  390 (651)
Q Consensus       319 Leekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~  390 (651)
                      +++.|..--.-.+|-..-+.++...++.++.    |+....+....++..+..+...+.++.++..+|...|
T Consensus       306 le~RL~~l~~LkrKyg~s~e~l~~~~~~l~~----eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R  373 (563)
T TIGR00634       306 IEERLAQIKRLKRKYGASVEEVLEYAEKIKE----ELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIR  373 (563)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344333333444444556666655555443    4444555566666666666666666666666666663

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=86.86  E-value=22  Score=35.48  Aligned_cols=87  Identities=26%  Similarity=0.339  Sum_probs=53.3

Q ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHHHHh-HHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhh
Q 036820          169 TISGLGKELQNEKRFIEELRIEIDSLQT-SLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSL  247 (651)
Q Consensus       169 TLtSL~keLqnek~tVEdlk~eIeql~s-sLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsL  247 (651)
                      +|......++..+...+.+..+|+.+-. ........+..+..++.++-+.+..|.++|..+..++.++...+.++...|
T Consensus        21 ~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l  100 (302)
T PF10186_consen   21 RLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESL  100 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444322 000033345566667777777777888888888888888888888888888


Q ss_pred             hhhHHHhh
Q 036820          248 QQKETELK  255 (651)
Q Consensus       248 a~KE~e~~  255 (651)
                      ..+...+.
T Consensus       101 ~~~~~~l~  108 (302)
T PF10186_consen  101 EQRRSRLS  108 (302)
T ss_pred             HHHHHHHH
Confidence            77777666

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=86.07  E-value=20  Score=34.22  Aligned_cols=87  Identities=13%  Similarity=0.336  Sum_probs=73.8

Q ss_pred             hHhHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHH
Q 036820          106 KKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIE  185 (651)
Q Consensus       106 kka~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVE  185 (651)
                      |+.+...+.++...|..-=+++..-...+-.||..+-..++++.    +..+.+-+.+..++..+..++..+.++...|.
T Consensus        38 rr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~----ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~  113 (126)
T PF07889_consen   38 RRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQK----EISKQIKDEVTEVREDVSQIGDDVDSVQQMVE  113 (126)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            56777888899999999999999999999999999988888776    35566777888999999999999999999998


Q ss_pred             HHHHHHHHHHh
Q 036820          186 ELRIEIDSLQT  196 (651)
Q Consensus       186 dlk~eIeql~s  196 (651)
                      .+..+|..++.
T Consensus       114 ~Le~ki~~ie~  124 (126)
T PF07889_consen  114 GLEGKIDEIEE  124 (126)
T ss_pred             HHHHHHHHHhc
Confidence            88888877654

The region featured in this family is approximately 100 amino acids long.

>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain

Probab=85.90  E-value=23  Score=35.65  Aligned_cols=172  Identities=17%  Similarity=0.252  Sum_probs=77.4

Q ss_pred             chhhHHHHHhhhhhhhHhHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHh----HHHhHHHHHHHHHH
Q 036820           91 RSGVLGALYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSA----KEEQQLLMNKLNSA  166 (651)
Q Consensus        91 ~sGvlg~Ly~l~q~ekka~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk~----kEeeQSLlDQLnSL  166 (651)
                      ++|+|+|-  ...+.....-.+++.+-    ..|..|..-    -+.|...+....+|-...    ++....+.+..+.+
T Consensus         4 ~~~lLagC--~~~~~~e~~~~~le~a~----~~Ek~~~~~----~k~L~~lE~~~q~lY~~ii~~~~~d~~~v~~~~~~a   73 (204)
T PF10368_consen    4 SALLLAGC--TGKKPEEQLYDQLEKAV----KQEKPFKEQ----QKKLNELEKKEQELYEQIIQLGKDDNDEVKKLSDEA   73 (204)
T ss_dssp             ----------HHHHHHHHHHHHHHHHH----HTTHHHHHH----HHHHHHHHHHHHTTTTGG---G-SSHHHHHHHHHHH
T ss_pred             HHHHHHhc--CCCChHHHHHHHHHHHH----HHHHHHHHH----HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence            46778887  44555555555555432    223333221    122223333333333221    23334444445555


Q ss_pred             HHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhh
Q 036820          167 NTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSS  246 (651)
Q Consensus       167 nsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~Ss  246 (651)
                      -..+..-++.|..++..++....+...+...+.+.++..-                              -+.+..|...
T Consensus        74 ~~nv~~R~k~l~~Ek~ai~~a~~e~~~~~~~i~ki~d~~~------------------------------k~qa~~l~~~  123 (204)
T PF10368_consen   74 LKNVDEREKELKKEKEAIEKAKEEFKKAKKYIDKIEDEKL------------------------------KKQAKELNEA  123 (204)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTT----------HHH------------------------------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH------------------------------HHHHHHHHHH
Confidence            5555555555555555555555555555554443333211                              1124455555


Q ss_pred             hhhhHHHhhhhHhhhhhh-------------------hhhhh---hhhhHhcccchHHHHHHHHHHHHHhhhchhhhh
Q 036820          247 LQQKETELKNLNSVYKQN-------------------ELNAR---ASSLLVERDDSKQKLEAVQKEYKELKLSSENET  302 (651)
Q Consensus       247 La~KE~e~~nL~~~y~qt-------------------~Ln~~---v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~a  302 (651)
                      +-.+-..|..|...|...                   +|..+   |+..|..-....++.+...++|++.|...-..|
T Consensus       124 ~~~ry~~~~~l~~~Y~~~l~~ekely~~L~~~d~~~~~l~~ki~~iN~~y~~~~~~~~~fn~~t~~yN~~K~~~y~~a  201 (204)
T PF10368_consen  124 MKKRYKSYDKLYKAYKKALELEKELYEMLKDKDTTQKQLDEKIKAINQSYKEVNKQKEKFNEYTKKYNEEKQDFYKKA  201 (204)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            666666666666666554                   44444   455555566667788889999999887665544

They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=84.97  E-value=34  Score=32.79  Aligned_cols=28  Identities=29%  Similarity=0.413  Sum_probs=13.5

Q ss_pred             HHHHhhhHHHHHHHHhhhhhhHHHHHHH
Q 036820          444 EELQNVSHELEATAENRDSLRKELVNIY  471 (651)
Q Consensus       444 eeL~~~S~eL~~~~e~rd~L~kEL~d~Y  471 (651)
                      +.++..-..+.+.-+....+.+|+.|..
T Consensus       123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~  150 (191)
T PF04156_consen  123 ELLKSVEERLDSLDESIKELEKEIRELQ  150 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444445555555555555

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=84.22  E-value=31  Score=33.10  Aligned_cols=13  Identities=23%  Similarity=0.555  Sum_probs=4.8

Q ss_pred             HHhhhhhHHHHHH
Q 036820          337 IAKFTQEKDDLRK  349 (651)
Q Consensus       337 Ia~L~~e~~~~r~  349 (651)
                      ++.+.+|++++..
T Consensus        90 l~~l~~el~~l~~  102 (191)
T PF04156_consen   90 LQQLQEELDQLQE  102 (191)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=84.06  E-value=1.2e+02  Score=37.77  Aligned_cols=251  Identities=22%  Similarity=0.299  Sum_probs=154.1

Q ss_pred             HHHHHHHHhHhhhchhHHHhhhhhHHHHHHH------HHHhhhhh-----------hhhHHHHHhhHHHHHhhhhhhhHH
Q 036820          320 KEKLELTLDEACENRATIAKFTQEKDDLRKM------LDNELGNV-----------KNLKYELQITQETLETTRNEASDL  382 (651)
Q Consensus       320 eekl~~Al~e~~k~~~~Ia~L~~e~~~~r~m------Ld~E~~~~-----------k~L~~~lq~Tqe~L~~sR~e~s~L  382 (651)
                      +-++..|+.-+-++-++.-||.+-.-..|.-      |+..-...           ++=+-++   ...+..+|.+.++|
T Consensus       607 ~p~fdka~k~Vfgktivcrdl~qa~~~ak~~~ln~ITl~GDqvskkG~lTgGy~D~krsrLe~---~k~~~~~~~~~~~l  683 (1200)
T KOG0964|consen  607 EPQFDKALKHVFGKTIVCRDLEQALRLAKKHELNCITLSGDQVSKKGVLTGGYEDQKRSRLEL---LKNVNESRSELKEL  683 (1200)
T ss_pred             chhhHHHHHHHhCceEEeccHHHHHHHHHhcCCCeEEeccceecccCCccccchhhhhhHHHH---HhhhHHHHHHHHHH
Confidence            5688999999999999999998887766642      22221111           1222222   34566778888888


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhh
Q 036820          383 EKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDS  462 (651)
Q Consensus       383 ~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~  462 (651)
                      .+.|+++++..-+...+|..+.....    .+.+.+...++.-+.|..|+.+++.--...++.++.-..+|..+--.++-
T Consensus       684 ~~~L~~~r~~i~~~~~~i~q~~~~~q----k~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~  759 (1200)
T KOG0964|consen  684 QESLDEVRNEIEDIDQKIDQLNNNMQ----KVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHK  759 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            88888888877777777777766543    34566677777778888888888888888888888887777766555554


Q ss_pred             hhHHHHHHHHHhHhh----HHHHHHHHHHHHHHHHHHHHHHHHhhhh------HHHhHh-HHHh--------HHHHhhhH
Q 036820          463 LRKELVNIYKKAEAT----ANDLKEQKEIVSSLNKELQALEKQTSKD------KEARKS-LETD--------LEEATKSL  523 (651)
Q Consensus       463 L~kEL~d~YKK~E~t----~~eL~~ekkiv~tLn~eL~al~~Q~~~d------~EaRk~-Le~d--------LeeaT~Sl  523 (651)
                      +.--.  -|.+.|-.    .+.=.+|+.-+..||.|+.+|-.+.-.-      -+.||+ |++.        .+++-.-+
T Consensus       760 ~~~~~--~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~kL~~r~~~l~~ei  837 (1200)
T KOG0964|consen  760 LESQS--NYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANLNTKLYKRVNELEQEI  837 (1200)
T ss_pred             HHHHH--HhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHh
Confidence            43211  12222222    2223578888999999999988877633      344432 2222        23344444


Q ss_pred             HHhhhhHHHH-----hHHHhhhhhccccchhHHHHHHHhHHHHHhhhHHHhhchHHHHHHH
Q 036820          524 DEMNRNALEL-----SKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLV  579 (651)
Q Consensus       524 dEmn~~~~~L-----S~~Le~ans~issle~eKevL~ksl~eqk~~t~EAqeN~eDA~nli  579 (651)
                      +..|++..-.     -.+|+..+.++-+.--|-.-|..+.+.-+....+-+.++|-|.||=
T Consensus       838 ~~~~d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~le  898 (1200)
T KOG0964|consen  838 GDLNDSSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKNLE  898 (1200)
T ss_pred             hhcccccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555544221     1234444444444444444555555566666666677777776653

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=84.01  E-value=0.79  Score=49.35  Aligned_cols=123  Identities=17%  Similarity=0.307  Sum_probs=16.4

Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhh
Q 036820          156 QQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELRE  235 (651)
Q Consensus       156 eQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~  235 (651)
                      =.++.++|..+...+.++..-+......+.++...+..+...+.+....+..+...+..--..|+.|-.-|+-|+..+.+
T Consensus        30 Ls~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~  109 (326)
T PF04582_consen   30 LSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSD  109 (326)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhh
Confidence            34444455555554444444444444444444444444444444444444444444444334444444444444444444


Q ss_pred             hhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHHH
Q 036820          236 KDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAV  287 (651)
Q Consensus       236 Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l  287 (651)
                      -+..|-.|.+..+.-+.++-||         ++-|+++=..-.+.+.++++|
T Consensus       110 h~ssIS~Lqs~v~~lsTdvsNL---------ksdVSt~aL~ItdLe~RV~~L  152 (326)
T PF04582_consen  110 HSSSISDLQSSVSALSTDVSNL---------KSDVSTQALNITDLESRVKAL  152 (326)
T ss_dssp             --------HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHhhhhhhhhhhhh---------hhhhhhhcchHhhHHHHHHHH
Confidence            4444444555555445554444         444444444444444444444

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=83.93  E-value=37  Score=31.63  Aligned_cols=108  Identities=19%  Similarity=0.279  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHH-------HHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHH
Q 036820          315 ELHQLKEKLELTLDEACENRATIAKFTQEKDDLRK-------MLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLK  387 (651)
Q Consensus       315 ~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~-------mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~  387 (651)
                      +++.|+..+..+......-...|..+..+++....       ..+.||..+...-.       .|...|.++..+..++.
T Consensus         4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~-------~L~~lr~e~~~~~~~~~   76 (132)
T PF07926_consen    4 ELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIK-------ELQQLREELQELQQEIN   76 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444333333322       23445544444333       34444555555555555


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhh
Q 036820          388 QSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLA  429 (651)
Q Consensus       388 ~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls  429 (651)
                      +.+.........+......|.+-+..|...|.+++.-.+-|.
T Consensus        77 ~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~  118 (132)
T PF07926_consen   77 ELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLN  118 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555556666677788888888888877777665544

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=83.52  E-value=94  Score=36.03  Aligned_cols=280  Identities=15%  Similarity=0.174  Sum_probs=149.0

Q ss_pred             HHhhhhhhhHhHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHH---HHhHHHhHHHHHHHHHHHHhHHHHH
Q 036820           98 LYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQL---KSAKEEQQLLMNKLNSANTTISGLG  174 (651)
Q Consensus        98 Ly~l~q~ekka~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLL---Kk~kEeeQSLlDQLnSLnsTLtSL~  174 (651)
                      +|..--++..++++|-+-+..+.++-+. |+.-.+..+.|-+..+.+-.++-   ...++.-+...+.|..+..-+..-.
T Consensus       265 ~~~~i~~~i~~lk~~n~~l~e~i~ea~k-~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kE  343 (622)
T COG5185         265 FVHIINTDIANLKTQNDNLYEKIQEAMK-ISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKE  343 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            3444446778888888888888887653 55566666666677777766665   1123334444444455555555555


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHh
Q 036820          175 KELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETEL  254 (651)
Q Consensus       175 keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~  254 (651)
                      .+++..+.-+..+..++..-+.+..+.+.-.. -+.+|.-.|+.|.+   ++.-|...+++-+-.+|..--||-.+=-+|
T Consensus       344 eei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~-Ere~L~reL~~i~~---~~~~L~k~V~~~~leaq~~~~slek~~~~~  419 (622)
T COG5185         344 EEIKALQSNIDELHKQLRKQGISTEQFELMNQ-EREKLTRELDKINI---QSDKLTKSVKSRKLEAQGIFKSLEKTLRQY  419 (622)
T ss_pred             HHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHH-HHHHHHHHHHHhcc---hHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            55555555555566665555555554443321 23344445555544   333345555555555555555554444444


Q ss_pred             hhhHhhhhhh---------------------------------------------------------------hhhhhhh
Q 036820          255 KNLNSVYKQN---------------------------------------------------------------ELNARAS  271 (651)
Q Consensus       255 ~nL~~~y~qt---------------------------------------------------------------~Ln~~v~  271 (651)
                      +.|..  .-|                                                               ++|.-++
T Consensus       420 ~sl~~--~i~~~~~~i~~~~nd~~l~iN~E~~~~~~sg~~~~I~~~i~eln~~i~~~~~~e~nksi~Lee~i~~~~~~i~  497 (622)
T COG5185         420 DSLIQ--NITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIKNLKHDIN  497 (622)
T ss_pred             HHHHH--HhcccHHHHhhcCCCCceeeccccCCccccCchHhHHHHHHHHhHHHHHHHHHHhccceeHHHHhhhHHhHHH
Confidence            44321  111                                                               3333344


Q ss_pred             hhHhcccchHHHHHHHHHHHHHhhhch-hhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHh--------hhchhHHHhhhh
Q 036820          272 SLLVERDDSKQKLEAVQKEYKELKLSS-ENETASNAKRLREKKEELHQLKEKLELTLDEA--------CENRATIAKFTQ  342 (651)
Q Consensus       272 sL~~ek~~~~~k~~~l~key~~lk~ss-E~~aa~da~lL~eke~~l~qLeekl~~Al~e~--------~k~~~~Ia~L~~  342 (651)
                      .|......++-+|...-+.|..+|-.+ +.+.|.|++. ---+.+|++|.=--.+-+.++        -+=..+-.++|.
T Consensus       498 El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~-eklE~el~~lnL~s~ts~l~~eq~vqs~~i~ld~~~~~~n~  576 (622)
T COG5185         498 ELTQILEKLELELSEANSKFELSKEENERELVAQRIEI-EKLEKELNDLNLLSKTSILDAEQLVQSTEIKLDELKVDLNR  576 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHhhhhccchHhhHHHHHHHHHhhHHHHHHHHHH
Confidence            555555556666667777777777544 3456666664 334555555532111111111        111223445666


Q ss_pred             hHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHh
Q 036820          343 EKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKD  391 (651)
Q Consensus       343 e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~  391 (651)
                      ++..+-+|+-.=+...-+.+--+|+   .|+++|++.   -+.+++.++
T Consensus       577 ~r~~i~k~V~~v~~~~~~fk~~IQs---sledl~~~l---~k~~~~l~~  619 (622)
T COG5185         577 KRYKIHKQVIHVIDITSKFKINIQS---SLEDLENEL---GKVIEELRN  619 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHh---hHHHHHHHH---HHHHHHHHh
Confidence            6666666666666666666665554   355555543   334444443

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=83.32  E-value=62  Score=33.80  Aligned_cols=55  Identities=11%  Similarity=0.196  Sum_probs=26.4

Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHH
Q 036820          156 QQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEE  210 (651)
Q Consensus       156 eQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~  210 (651)
                      .+.+-.+++....++..+..++...+..+..+..++..++..+..++...+....
T Consensus       132 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~  186 (423)
T TIGR01843       132 QSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRK  186 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444455555555555555555555555555555555544444444333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=82.96  E-value=79  Score=34.73  Aligned_cols=28  Identities=11%  Similarity=0.073  Sum_probs=11.8

Q ss_pred             hhhhhHHhHHHHHHHhHHHHHhhhHHHH
Q 036820          427 VLAGELFAAKEVLKKASEELQNVSHELE  454 (651)
Q Consensus       427 ~Ls~El~s~ke~l~k~~eeL~~~S~eL~  454 (651)
                      .+..++..+...+...+.+++.....+.
T Consensus       169 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~  196 (457)
T TIGR01000       169 AAEKTKAQLDQQISKTDQKLQDYQALKN  196 (457)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444433333

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=82.95  E-value=1.4e+02  Score=37.75  Aligned_cols=118  Identities=14%  Similarity=0.200  Sum_probs=68.7

Q ss_pred             hhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHH
Q 036820          272 SLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKML  351 (651)
Q Consensus       272 sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mL  351 (651)
                      .+..+-+++...+..+.-.|..|..+-..        +..-...+..++..+..+-.+...=..-|+.+..+++.+...+
T Consensus       848 ~~~~aL~~y~~~l~~l~~~~~~L~~A~~~--------~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l  919 (1353)
T TIGR02680       848 AVGLALKRFGDHLHTLEVAVRELRHAATR--------AAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESV  919 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555567777777777777777644332        2334445555556666666665555666777777777777777


Q ss_pred             HHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHH
Q 036820          352 DNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEI  400 (651)
Q Consensus       352 d~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qi  400 (651)
                      ...   +..+...|+.....|...+.+.-.+..++...+..-..+..++
T Consensus       920 ~~~---~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~  965 (1353)
T TIGR02680       920 GAM---VDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKR  965 (1353)
T ss_pred             HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            644   3345555555555555555555555555544444444444433

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=82.55  E-value=77  Score=34.31  Aligned_cols=197  Identities=21%  Similarity=0.267  Sum_probs=84.3

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHH-H--hHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhh
Q 036820          126 AIVSLEKDFESKLQNEQEQRTKQLK-S--AKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFG  202 (651)
Q Consensus       126 a~~~lDedFEkRLKevQeeVkkLLK-k--~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAE  202 (651)
                      +|..+...|+.+..+....+..+-. +  +...=..+-..=+.+|..|..+....+..+.--..++.++.+++..-.   
T Consensus         3 ~~~~~~~E~e~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~---   79 (294)
T COG1340           3 AMLDKLDELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRD---   79 (294)
T ss_pred             hHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            3444555555555543333333331 0  111222233333334444444444444444444444444444444433   


Q ss_pred             hhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhh-hhhhhhhhhHhcccchH
Q 036820          203 EDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQN-ELNARASSLLVERDDSK  281 (651)
Q Consensus       203 edkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt-~Ln~~v~sL~~ek~~~~  281 (651)
                          .+-..+.+.+..+..+-.++|..+.           .--++-.++.+++.|-.++ || .|+-..      -...-
T Consensus        80 ----ein~kl~eL~~~~~~l~e~~~~~~~-----------~~~~~~~ler~i~~Le~~~-~T~~L~~e~------E~~lv  137 (294)
T COG1340          80 ----EINAKLQELRKEYRELKEKRNEFNL-----------GGRSIKSLEREIERLEKKQ-QTSVLTPEE------ERELV  137 (294)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHhhhhhc-----------cCCCHHHHHHHHHHHHHHH-HhcCCChHH------HHHHH
Confidence                3444444455555555566553321           0112334455555554443 33 222211      12445


Q ss_pred             HHHHHHHHHHHHhhhchhhhhhhh---hhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHH
Q 036820          282 QKLEAVQKEYKELKLSSENETASN---AKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLR  348 (651)
Q Consensus       282 ~k~~~l~key~~lk~ssE~~aa~d---a~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r  348 (651)
                      ++|..|.|+|.+-+..-+-.+...   ++.. ..-+...-+-+++..--+++.+-+..+..+-++.|.+|
T Consensus       138 q~I~~L~k~le~~~k~~e~~~~~~el~aei~-~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~R  206 (294)
T COG1340         138 QKIKELRKELEDAKKALEENEKLKELKAEID-ELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELR  206 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667777777777665444333322   2221 11122233333444444444444444544444444444

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=82.20  E-value=5  Score=39.34  Aligned_cols=97  Identities=33%  Similarity=0.418  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHh
Q 036820          136 SKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQK  215 (651)
Q Consensus       136 kRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeK  215 (651)
                      .++...+++...+.+.    ...+..+|..++..+..+...+..-...+.++...+..+...+.       ....+|++|
T Consensus        74 ~~~~~l~~ELael~r~----~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~-------~l~~~l~ek  142 (194)
T PF08614_consen   74 QKLAKLQEELAELYRS----KGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIK-------DLEEELKEK  142 (194)
T ss_dssp             --------------------------------------------HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred             cccccccccccccccc----cccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence            3444555556666552    33477788888888888888888888888888777777777766       778888888


Q ss_pred             hhhHHhhhhhhhhhhhhhhhhhhhhhhh
Q 036820          216 LDRIEGLQDKINLLSLELREKDDGVQKL  243 (651)
Q Consensus       216 l~~i~~Lq~kinLLs~e~~~Ke~~i~~l  243 (651)
                      =..+++|+|=+--|..+++--|+.++.|
T Consensus       143 ~k~~e~l~DE~~~L~l~~~~~e~k~~~l  170 (194)
T PF08614_consen  143 NKANEILQDELQALQLQLNMLEEKLRKL  170 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999998888888887777766655

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.90  E-value=77  Score=33.84  Aligned_cols=85  Identities=14%  Similarity=0.148  Sum_probs=41.9

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhh----hhhhhhhhhhhhhhhhhhhhhhh
Q 036820          170 ISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGL----QDKINLLSLELREKDDGVQKLSS  245 (651)
Q Consensus       170 LtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~L----q~kinLLs~e~~~Ke~~i~~l~S  245 (651)
                      ++.+..++..+...|+-=+..+++....=.    .+...+..+.++++.+..|    +...+-|..+...+...+-.+-.
T Consensus       129 fsD~IsRvtAi~~iv~aDk~ile~qk~dk~----~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa  204 (265)
T COG3883         129 FSDLISRVTAISVIVDADKKILEQQKEDKK----SLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAA  204 (265)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555566666555555554444443322    3334444455555444443    44445555555555555555555


Q ss_pred             hhhhhHHHhhhhH
Q 036820          246 SLQQKETELKNLN  258 (651)
Q Consensus       246 sLa~KE~e~~nL~  258 (651)
                      ..+.-..|...|-
T Consensus       205 ~~a~~~~e~a~l~  217 (265)
T COG3883         205 KEASALGEKAALE  217 (265)
T ss_pred             HHHHhHHHHHHHH
Confidence            5555444444444

>PRK10884 SH3 domain-containing protein; Provisional

Probab=81.85  E-value=13  Score=37.67  Aligned_cols=27  Identities=19%  Similarity=0.299  Sum_probs=17.5

Q ss_pred             HhHhhhchhHHHhhhhhHHHHHHHHHH
Q 036820          327 LDEACENRATIAKFTQEKDDLRKMLDN  353 (651)
Q Consensus       327 l~e~~k~~~~Ia~L~~e~~~~r~mLd~  353 (651)
                      |++...-+..+..|.+++..++..|++
T Consensus        85 Ls~~p~~~~rlp~le~el~~l~~~l~~  111 (206)
T PRK10884         85 LSTTPSLRTRVPDLENQVKTLTDKLNN  111 (206)
T ss_pred             hcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            444455566777777777777766655

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=81.26  E-value=25  Score=42.28  Aligned_cols=153  Identities=22%  Similarity=0.318  Sum_probs=107.6

Q ss_pred             HHHhHHHHHHHHHhHHHHH-----HHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhh
Q 036820          166 ANTTISGLGKELQNEKRFI-----EELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGV  240 (651)
Q Consensus       166 LnsTLtSL~keLqnek~tV-----Edlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i  240 (651)
                      ++++|..+.+.|+.-..+-     .+++-++--+++-       ...++.+|+|-+..++.||.|-.-|..-+..--+.-
T Consensus       399 LrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSl-------N~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~En  471 (861)
T PF15254_consen  399 LRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSL-------NMSLQNQLQESLKSQELLQSKNEELLKVIENQKEEN  471 (861)
T ss_pred             HHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHH-------HHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHH
Confidence            3455555555554432222     4455555555554       448999999999999999999998888887776667


Q ss_pred             hhhhhhhhhhHHHhhhhHhhhhhh--hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHH
Q 036820          241 QKLSSSLQQKETELKNLNSVYKQN--ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQ  318 (651)
Q Consensus       241 ~~l~SsLa~KE~e~~nL~~~y~qt--~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~q  318 (651)
                      +.+..-+-+|+.++.+....|+--  .+.-.|...++.-..+.=||.+-.||-..|..+           |+.+|.++..
T Consensus       472 k~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~it-----------lrQrDaEi~R  540 (861)
T PF15254_consen  472 KRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGIT-----------LRQRDAEIER  540 (861)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhH-----------HHHHHHHHHH
Confidence            778888889999998888888754  555557777777788888888888888777654           4667777776


Q ss_pred             HHHH-------HHHHHhHhhhchhH
Q 036820          319 LKEK-------LELTLDEACENRAT  336 (651)
Q Consensus       319 Leek-------l~~Al~e~~k~~~~  336 (651)
                      |.|-       ...-|+|-+.|.+.
T Consensus       541 L~eLtR~LQ~Sma~lL~dls~D~ar  565 (861)
T PF15254_consen  541 LRELTRTLQNSMAKLLSDLSVDSAR  565 (861)
T ss_pred             HHHHHHHHHHHHHHHhhhccccccc
Confidence            6652       23345555555544

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=80.87  E-value=1.3  Score=47.72  Aligned_cols=93  Identities=18%  Similarity=0.283  Sum_probs=0.7

Q ss_pred             HHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhh
Q 036820          167 NTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSS  246 (651)
Q Consensus       167 nsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~Ss  246 (651)
                      ...|+.++++|...+..++.+...+..+-+.+.+...+++.+...+.+--..|..|...|.-|...|.+-+..|-.++..
T Consensus        27 ~GDLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~  106 (326)
T PF04582_consen   27 PGDLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSST  106 (326)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhh
Confidence            34566666666666666666666666666666666666666666666655555555555555555555555555555555


Q ss_pred             hhhhHHHhhhhHh
Q 036820          247 LQQKETELKNLNS  259 (651)
Q Consensus       247 La~KE~e~~nL~~  259 (651)
                      ++.-+..+-+|++
T Consensus       107 ls~h~ssIS~Lqs  119 (326)
T PF04582_consen  107 LSDHSSSISDLQS  119 (326)
T ss_dssp             -----------HH
T ss_pred             hhhhhhhHHHHHH
Confidence            5554444444433

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=80.87  E-value=64  Score=32.26  Aligned_cols=42  Identities=24%  Similarity=0.360  Sum_probs=24.1

Q ss_pred             hhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHH
Q 036820          429 AGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKK  473 (651)
Q Consensus       429 s~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK  473 (651)
                      ...+.....-+...+..+..+...+   ...|..+-.+|..+|-=
T Consensus       118 ~~~~~~~~~~~~~~~~~l~~l~~~l---~~~r~~l~~~l~~ifpI  159 (302)
T PF10186_consen  118 QEQLEELQNELEERKQRLSQLQSQL---ARRRRQLIQELSEIFPI  159 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCc
Confidence            3344444445555555555544443   33677788888888853

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PRK10884 SH3 domain-containing protein; Provisional

Probab=80.83  E-value=15  Score=37.31  Aligned_cols=45  Identities=11%  Similarity=0.161  Sum_probs=21.5

Q ss_pred             HhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHH
Q 036820          168 TTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEER  212 (651)
Q Consensus       168 sTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eL  212 (651)
                      ....++.+.+..-+..+.+++.+..++...+..+....+.++.++
T Consensus       118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~  162 (206)
T PRK10884        118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQL  162 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444555555555555555554444444444433

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=80.70  E-value=1.2e+02  Score=35.41  Aligned_cols=131  Identities=17%  Similarity=0.329  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHHHhHHHhhhh-----------------hccccchhHHH
Q 036820          490 SLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKAN-----------------SQISNLEDEKA  552 (651)
Q Consensus       490 tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~~Le~an-----------------s~issle~eKe  552 (651)
                      -++.+++.|=.++-.+=+||+..+.-+..-+.-|+-|+++--.|-.+.+..+                 .++.+|+.--.
T Consensus       285 ~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~  364 (570)
T COG4477         285 LIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLD  364 (570)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHH
Confidence            3455666677777778888887776666666666655555555555544433                 24445555555


Q ss_pred             HHHHhHHHHHhhhHHHhhchHHHHHHHHHhhhhhhhhhHhhhhhHHHHhhcccchhhhhhccccccCc
Q 036820          553 VLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSKTL  620 (651)
Q Consensus       553 vL~ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ERE~~e~r~kkLEeELAsAKGEiLrLR~qi~ss~s~  620 (651)
                      .+-.-+..|..+--+.|.|+++-.+-+.-..++-+++--...-|+.+=..|+-...|++++|...+--
T Consensus       365 ~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~  432 (570)
T COG4477         365 EILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRY  432 (570)
T ss_pred             HHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55556667777888999999999999999999999999999999999999999999999998776543

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=80.53  E-value=1  Score=46.56  Aligned_cols=106  Identities=28%  Similarity=0.346  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHh---hhhHHHHhH------------HHhhhhhccccchhHHHHH
Q 036820          490 SLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEM---NRNALELSK------------NLEKANSQISNLEDEKAVL  554 (651)
Q Consensus       490 tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEm---n~~~~~LS~------------~Le~ans~issle~eKevL  554 (651)
                      .|.+++..++.++..-++.=..||.||..+..+.+..   |.++-..+.            .+--+.|-++.        
T Consensus         3 ~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~--------   74 (248)
T PF08172_consen    3 ELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGG--------   74 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCC--------
Confidence            4556666666666666666666777777766554443   222222221            11111112222        


Q ss_pred             HHhHHHHHhhhHHHhhchHHHHHHHHHhhhhhhhhhHhhhhhHHHHhhcccchhhhhhccccccCcc
Q 036820          555 YKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSKTLV  621 (651)
Q Consensus       555 ~ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ERE~~e~r~kkLEeELAsAKGEiLrLR~qi~ss~s~~  621 (651)
                                        .+...|+--+-..|.-|-.|...||+|+...+.+|--||++|.+.++-+
T Consensus        75 ------------------~~~~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN  123 (248)
T PF08172_consen   75 ------------------GGDSSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADN  123 (248)
T ss_pred             ------------------CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                              5677889999999999999999999999999999999999999988876

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	651
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-22
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-17
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	9e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-18
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-04
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	1e-04
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-04
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	3e-04
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	3e-04
2xs1_A	704	Programmed cell death 6-interacting protein; prote	4e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score =  100 bits (250), Expect = 6e-22
 Identities = 52/318 (16%), Positives = 124/318 (38%), Gaps = 18/318 (5%)

Query: 306  AKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYEL 365
             + ++ K EEL + KE+ +    E  E      +  +EK+ L++ L  E       +   
Sbjct: 856  EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMR 915

Query: 366  QITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSG 425
                   +       ++E ++++ ++    L+ E  +++ +  +++      L+E + + 
Sbjct: 916  VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLE----EQLEEEEAAR 971

Query: 426  EVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQK 485
            + L       +     A  +++ +  ++    +  + L KE   + ++      +L E++
Sbjct: 972  QKL-------QLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEE 1024

Query: 486  EIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQIS 545
            E   +L K     E   S        LE  L++  KS  E+ +   +L       + QI+
Sbjct: 1025 EKAKNLTKLKNKHESMIS-------ELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIA 1077

Query: 546  NLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKG 605
             L+ + A L   L +++     +   +ED  +      ++ + L+     L+E+L S K 
Sbjct: 1078 ELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKA 1137

Query: 606  EILRLRSQINSSKTLVND 623
               +   Q       +  
Sbjct: 1138 ARNKAEKQKRDLSEELEA 1155

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 84.5 bits (209), Expect = 5e-17
 Identities = 60/376 (15%), Positives = 137/376 (36%), Gaps = 47/376 (12%)

Query: 176  ELQNEKRFIEELR---IEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLE 232
             L    R  EE++    E+   +    K   + + LE++  Q  +    LQ+K+   +  
Sbjct: 848  PLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETEL 907

Query: 233  LREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYK 292
              E ++   +L++  Q+ E  L  + +  +  E   R+  L  E+   +Q++  ++++ +
Sbjct: 908  YAEAEEMRVRLAAKKQELEEILHEMEA--RIEEEEERSQQLQAEKKKMQQQMLDLEEQLE 965

Query: 293  ELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLD 352
            E +              ++ + E      K++   D+         K T+E+  L +   
Sbjct: 966  EEE-----------AARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEE--- 1011

Query: 353  NELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISR---IRAEFAE 409
                        +      L     +A +L K   + +   ++LE  + +    R E  +
Sbjct: 1012 -----------RVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEK 1060

Query: 410  VKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVN 469
            +K  L     +       L  ++   K  L K  EELQ     LE     +++  K++  
Sbjct: 1061 IKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKI-- 1118

Query: 470  IYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRN 529
                        +E +  +S L ++L++ +   +K ++ ++ L  +LE     L++    
Sbjct: 1119 ------------RELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDT 1166

Query: 530  ALELSKNLEKANSQIS 545
                 +          
Sbjct: 1167 TATQQELRGSDYKDDD 1182

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 76.0 bits (187), Expect = 2e-14
 Identities = 44/244 (18%), Positives = 104/244 (42%), Gaps = 7/244 (2%)

Query: 103  QNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNK 162
            Q EKK     +  ++ +L+E+EAA   L+ + +     + ++    +   +++   L  +
Sbjct: 947  QAEKKKMQQQMLDLEEQLEEEEAARQKLQLE-KVTADGKIKKMEDDILIMEDQNNKLTKE 1005

Query: 163  LNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGL 222
                   +S L   L  E+   + L    +  ++ + +     +  E+ R++       L
Sbjct: 1006 RKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKL 1065

Query: 223  QDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQ 282
            + + + L  ++ E    + +L + L +KE EL+   +  +  +  ++ ++ L +  + + 
Sbjct: 1066 EGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALA--RLEDETSQKNNALKKIRELES 1123

Query: 283  KLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQ 342
             +  +Q++ +  K           K+ R+  EEL  LK +LE TLD     +       +
Sbjct: 1124 HISDLQEDLESEK----AARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYK 1179

Query: 343  EKDD 346
            + DD
Sbjct: 1180 DDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 74.1 bits (182), Expect = 9e-14
 Identities = 61/263 (23%), Positives = 101/263 (38%), Gaps = 24/263 (9%)

Query: 378  EASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKE 437
            + +  E++++   +     +    +  AE  E++       +E     E L  E     E
Sbjct: 851  KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAE 910

Query: 438  V------LKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKE----- 486
                   L    +EL+ + HE+EA  E  +   ++L    KK +    DL+EQ E     
Sbjct: 911  AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA 970

Query: 487  -------------IVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALEL 533
                          +  +  ++  +E Q +K  + RK LE  + + T +L E    A  L
Sbjct: 971  RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNL 1030

Query: 534  SKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRS 593
            +K   K  S IS LE       KS  E + I  +      D H  +  L  +   L  + 
Sbjct: 1031 TKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQL 1090

Query: 594  KKLEEELASAKGEILRLRSQINS 616
             K EEEL +A   +    SQ N+
Sbjct: 1091 AKKEEELQAALARLEDETSQKNN 1113

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 55.2 bits (133), Expect = 5e-08
 Identities = 34/213 (15%), Positives = 81/213 (38%), Gaps = 31/213 (14%)

Query: 103  QNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNK 162
              E+K  +  +  +   L E+E    +L      KL+N+ E    +L+   ++++    +
Sbjct: 1003 TKERKLLEERVSDLTTNLAEEEEKAKNLT-----KLKNKHESMISELEVRLKKEEKSRQE 1057

Query: 163  LNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGL 222
            L           ++L+ E     +L  +I  LQ  + +        EEE +  L R+E  
Sbjct: 1058 LEKIK-------RKLEGESS---DLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDE 1107

Query: 223  QDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQ 282
              + N    ++RE +  +  L   L+ ++                        ++ D  +
Sbjct: 1108 TSQKNNALKKIRELESHISDLQEDLESEKAARNKAEK----------------QKRDLSE 1151

Query: 283  KLEAVQKEYKELKLSSENETASNAKRLREKKEE 315
            +LEA++ E ++   ++  +        ++  ++
Sbjct: 1152 ELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 89.5 bits (221), Expect = 1e-18
 Identities = 84/552 (15%), Positives = 173/552 (31%), Gaps = 123/552 (22%)

Query: 120 LKEKEAAIV------SLEKDFE---SKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTI 170
           L  K+  +V       L  +++   S ++ EQ Q +   +   E++    ++L + N   
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR----DRLYNDNQVF 126

Query: 171 SGLGKELQNEKRFIEELRIE-IDSLQTSLLK--------------FGEDKRTLEEERKQK 215
           +         K  +   R++    L+ +LL+               G  K  +  +    
Sbjct: 127 A---------KYNVS--RLQPYLKLRQALLELRPAKNVLIDGVLGSG--KTWVALDVCLS 173

Query: 216 LDRIEGLQDKINLLSLELREKDDGV----QKLSSSLQQKETELKNLNSVYKQ--NELNAR 269
                 +  KI  L+L+     + V    QKL   +    T   + +S  K   + + A 
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 270 ASSLLVER---------DD--SKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQ 318
              LL  +          +  + +   A     K L  +   +              L  
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL-- 291

Query: 319 LKEKLELTLDEACENRATIAKFTQEK-DDL-RKMLDNELGNVKNLKYELQITQETLETTR 376
             +   +TL    E ++ + K+   +  DL R++L      +  +   ++    T +  +
Sbjct: 292 --DHHSMTLTPD-EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348

Query: 377 NEASDLEKQLKQSKDSCADLETEISRIR----AEFAE-VK---HTLGNSL--DEAKRSGE 426
           +   + +K     + S   LE    R      + F          L   +  D  K    
Sbjct: 349 H--VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS-LIWFDVIKSDVM 405

Query: 427 VLAGELFAAKEVLKKASEELQNVSH----ELEATAENRDSLRKELVNIYKKAEATAND-- 480
           V+  +L     +++K  +E          EL+   EN  +L + +V+ Y   +   +D  
Sbjct: 406 VVVNKL-HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464

Query: 481 ----------------LK--EQKEIVSSLNKE------LQALEKQTSKDKEARKSLETDL 516
                           LK  E  E ++           L+   +  S    A  S+   L
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524

Query: 517 EEA-------TKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESR 569
           ++          +  +  R    +   L K    +   +    +       + ++  E  
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL-------RIALMAEDE 577

Query: 570 ENMEDAHNLVMR 581
              E+AH  V R
Sbjct: 578 AIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.6 bits (151), Expect = 3e-10
 Identities = 42/283 (14%), Positives = 89/283 (31%), Gaps = 50/283 (17%)

Query: 396 LETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKAS-EELQNVSHELE 454
           ++ E    + ++ ++        D    + +    +    K +L K   + +      + 
Sbjct: 7   MDFETGEHQYQYKDILSVF---EDAFVDNFDCKDVQDMP-KSILSKEEIDHIIMSKDAVS 62

Query: 455 ATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLET 514
            T     +L  +   + +K           K ++S +  E +     T    E R  L  
Sbjct: 63  GTLRLFWTLLSKQEEMVQKFVEEVLR-INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121

Query: 515 DLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAV-LY------KS-LT------- 559
           D +   K     N + L+    L +A   +  L   K V +       K+ +        
Sbjct: 122 DNQVFAK----YNVSRLQPYLKLRQA---LLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174

Query: 560 --EQK--------SIANESREN--MEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEI 607
             + K        ++ N +     +E    L+ ++     S    S  ++  + S + E+
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 608 LRLRSQINSSKTL-VNDE--NPRKVED-DN--KVPVTAKKTTR 644
            RL         L V     N +     +   K+ +    TTR
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL----TTR 273

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 64.7 bits (158), Expect = 6e-11
 Identities = 37/282 (13%), Positives = 96/282 (34%), Gaps = 40/282 (14%)

Query: 287  VQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDD 346
            V+K Y+ ++ ++     +  +    + +    L+E   + + +          + +    
Sbjct: 831  VRKRYQCMRDATI-ALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKA 889

Query: 347  LRKMLDNELGNVKNLKYE-LQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRA 405
            +  +       +   + + L+I   ++E  +     LE ++ Q +    +   E   +  
Sbjct: 890  IVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLE 949

Query: 406  EFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRK 465
            +                     L        E L+   E L+    E +       SL++
Sbjct: 950  KMNN------------------LEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQE 991

Query: 466  ELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSL-- 523
            E+               + ++ +     E + +E+   K K   + L ++L+E    L  
Sbjct: 992  EI--------------AKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKT 1037

Query: 524  --DEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKS 563
              +E+NR   + +K + +   +   L +E   L   L +++ 
Sbjct: 1038 EKEELNRRIHDQAKEITETMEK--KLVEETKQLELDLNDERL 1077

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 64.0 bits (156), Expect = 1e-10
 Identities = 31/200 (15%), Positives = 70/200 (35%), Gaps = 23/200 (11%)

Query: 439  LKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKE----IVSSLNKE 494
              KA   LQ     + A        ++EL  + K    +    K+        +  L ++
Sbjct: 886  TLKAIVYLQCCYRRMMA--------KRELKKL-KIEARSVERYKKLHIGLENKIMQLQRK 936

Query: 495  LQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVL 554
            +    K+     E   +LE      T+ L           +  + A +++ +L++E A L
Sbjct: 937  IDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKL 996

Query: 555  YKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQI 614
                  +K +     E       +     + +   ++   +L+E+    K E   L  +I
Sbjct: 997  ------RKELHQTQTEKKT----IEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRI 1046

Query: 615  NSSKTLVNDENPRKVEDDNK 634
            +     + +   +K+ ++ K
Sbjct: 1047 HDQAKEITETMEKKLVEETK 1066

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 42/257 (16%), Positives = 86/257 (33%), Gaps = 22/257 (8%)

Query: 364  ELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKR 423
             ++     L+          K     ++  + +  +  R          TL   +     
Sbjct: 837  CMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCC 896

Query: 424  SGEVLA-GELFAAK------EVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEA 476
               ++A  EL   K      E  KK    L+N   +L+   + ++   K L+      E 
Sbjct: 897  YRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEI 956

Query: 477  TANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKN 536
            T +   E+   + S  + L+  E++         SL+ ++ +  K L +       + + 
Sbjct: 957  TYSTETEK---LRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEW 1013

Query: 537  LEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKL 596
             +K   +   L  E   L +  T  K+   E    + D         Q ++  +   KKL
Sbjct: 1014 ADKYKHETEQLVSE---LKEQNTLLKTEKEELNRRIHD---------QAKEITETMEKKL 1061

Query: 597  EEELASAKGEILRLRSQ 613
             EE    + ++   R +
Sbjct: 1062 VEETKQLELDLNDERLR 1078

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 60.9 bits (148), Expect = 9e-10
 Identities = 51/261 (19%), Positives = 95/261 (36%), Gaps = 21/261 (8%)

Query: 231  LELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAV--Q 288
              +R+    +Q L         + + +   +K   +       L      +     V  Q
Sbjct: 836  QCMRDATIALQALLRGYL-VRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQ 894

Query: 289  KEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLR 348
              Y+ +    E +      R  E+ ++L      LE            I +  ++ D+  
Sbjct: 895  CCYRRMMAKRELKKLKIEARSVERYKKL---HIGLE----------NKIMQLQRKIDEQN 941

Query: 349  KMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFA 408
            K   + L  + NL+       E L +        E++ K + +    L+ EI+++R E  
Sbjct: 942  KEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELH 1001

Query: 409  EV---KHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRK 465
            +    K T+    D+ K   E L  EL     +LK   EEL    H+     E  +++ K
Sbjct: 1002 QTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQA--KEITETMEK 1059

Query: 466  ELVNIYKKAEATANDLKEQKE 486
            +LV   K+ E   ND + + +
Sbjct: 1060 KLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 59.4 bits (144), Expect = 3e-09
 Identities = 30/191 (15%), Positives = 73/191 (38%), Gaps = 3/191 (1%)

Query: 101  LTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLM 160
              Q   +   A  E  K +++ +    V   K     L+N+  Q  +++    +E + L+
Sbjct: 892  YLQCCYRRMMAKRELKKLKIEARS---VERYKKLHIGLENKIMQLQRKIDEQNKEYKSLL 948

Query: 161  NKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIE 220
             K+N+   T S   ++L+++   +     E  +    +L   E+   L +E  Q     +
Sbjct: 949  EKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKK 1008

Query: 221  GLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDS 280
             +++  +    E  +    +++ ++ L+ ++ EL        +         L+ E    
Sbjct: 1009 TIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQL 1068

Query: 281  KQKLEAVQKEY 291
            +  L   +  Y
Sbjct: 1069 ELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 59.0 bits (143), Expect = 4e-09
 Identities = 44/268 (16%), Positives = 84/268 (31%), Gaps = 23/268 (8%)

Query: 162  KLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEG 221
            +   A   I    +     KR+ + +R    +LQ  L  +    +     R+ K   I+ 
Sbjct: 814  RRTRAAIIIQKFQRMYVVRKRY-QCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQK 872

Query: 222  LQDKINLLSLELREKDDGVQKLSSSLQ-QKETELKNLNSVYKQNELNARASSLLVER-DD 279
                        R     V       +   + ELK L    +  E   +    L  +   
Sbjct: 873  HVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQ 932

Query: 280  SKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAK 339
             ++K++   KEYK L      +  +       + E+L    E+L ++ +EA      +  
Sbjct: 933  LQRKIDEQNKEYKSL----LEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLS 988

Query: 340  FTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDS------- 392
              +E   LRK L       K ++      +   E   +E  +    LK  K+        
Sbjct: 989  LQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHD 1048

Query: 393  ---------CADLETEISRIRAEFAEVK 411
                        L  E  ++  +  + +
Sbjct: 1049 QAKEITETMEKKLVEETKQLELDLNDER 1076

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 28/193 (14%), Positives = 71/193 (36%), Gaps = 14/193 (7%)

Query: 437  EVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQ 496
            + ++ A+  LQ +        + +  LR+    I +K              + ++   LQ
Sbjct: 836  QCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAI-VYLQ 894

Query: 497  ALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYK 556
               ++    +E +K     L+   +S++   +  + L   + +   +I     E     K
Sbjct: 895  CCYRRMMAKRELKK-----LKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEY----K 945

Query: 557  SLTEQKSIANESREN----MEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRS 612
            SL E+ +    +       +      +    +E K+   R   L+EE+A  + E+ + ++
Sbjct: 946  SLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQT 1005

Query: 613  QINSSKTLVNDEN 625
            +  + +   +   
Sbjct: 1006 EKKTIEEWADKYK 1018

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 38/218 (17%), Positives = 81/218 (37%), Gaps = 9/218 (4%)

Query: 121 KEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNE 180
           K+ +   + LE     + + +Q++   +L+  +EE +     L  A   I  L ++L+  
Sbjct: 316 KQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQL 375

Query: 181 KRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGV 240
           +   EEL    + LQ  + +  E K     ER++  D I   Q++++ +  E+  KD   
Sbjct: 376 QAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSET 435

Query: 241 QKLSSSLQQKETELKNLNS---------VYKQNELNARASSLLVERDDSKQKLEAVQKEY 291
           ++L   ++    +     +          +   E            D   +         
Sbjct: 436 RRLQEEVEDARRKQDEAAAALLAATTPQHHHVAERADTDPDHDNASDAGSESGGGDLARG 495

Query: 292 KELKLSSENETASNAKRLREKKEELHQLKEKLELTLDE 329
            +  +    +  + A+R      +L  LK+ L  + DE
Sbjct: 496 PDDLVDPVADRRTLAERNERLHNQLKALKQDLARSCDE 533

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 39/296 (13%), Positives = 86/296 (29%), Gaps = 41/296 (13%)

Query: 208  LEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYK-QNEL 266
            +EE R+Q+L                 R     + +  +  Q         +S+   Q+ +
Sbjct: 754  IEEAREQRLGSE------QTKSDYLKRAN--ELVQWINDKQASLESRDFGDSIESVQSFM 805

Query: 267  NARASSLLVERDDSKQKLEAVQKEYKELKLSSE-NETASNAKRLREKKEELHQLKEKLEL 325
            NA       E+    Q++  ++  Y  L+      +             E+      LE 
Sbjct: 806  NAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEK 865

Query: 326  TLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQ 385
               E  E      K  ++   L +  +  L  ++N      +   + E T +  + ++ +
Sbjct: 866  AEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNE-TGDSITAVQAK 924

Query: 386  LKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEE 445
            LK  +    + ++   +  ++                               +L + +E 
Sbjct: 925  LKNLEAFDGECQSLEGQSNSD----------------------------LLSILAQLTEL 956

Query: 446  LQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQ 501
              N   EL    +   + +   V     AE   N L  + E +  +          
Sbjct: 957  NYNGVPELTERKDTFFAQQWTGVK--SSAETYKNTLLAELERLQKIEDLHHHHHHH 1010

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 27/219 (12%), Positives = 74/219 (33%), Gaps = 22/219 (10%)

Query: 333  NRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDS 392
            N  T   +    + +  +++ +   ++  +  L I  + L  T  +  DL+  L      
Sbjct: 1890 NYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSL------ 1943

Query: 393  CADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHE 452
             A    E+     +  +    +      A+   +             K+ + +      +
Sbjct: 1944 -AQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYAD 2002

Query: 453  LEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSL 512
            LE  AE    LR+E+  +   A        E    +++L K +   +++           
Sbjct: 2003 LEK-AEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEE----------- 2050

Query: 513  ETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEK 551
                    +  +++   + ++   ++++ + + NL  E+
Sbjct: 2051 ---YATLIRETEQIKTESSKVKNKVDRSIALLDNLNSER 2086

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 33/202 (16%), Positives = 78/202 (38%), Gaps = 13/202 (6%)

Query: 195  QTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREK----DDGVQKLSSSLQQK 250
            + ++       R      +  LD I  +   IN    +L E+    + G++KL  +  Q 
Sbjct: 1877 EANIRLLKRQGRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQV 1936

Query: 251  ETELKNLNSVYKQ-NELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRL 309
            +    +L    ++ +  N +A+  L +    +Q  E  QK+ +EL++  +      A + 
Sbjct: 1937 KDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQK 1996

Query: 310  REKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQ 369
             +   +L + +    L        R  + +     ++L+   D  +  +  L+  +   +
Sbjct: 1997 VKAYADLEKAEPTGPL--------REEVEQLENAANELKLKQDEIVATITALEKSIATYK 2048

Query: 370  ETLETTRNEASDLEKQLKQSKD 391
            E   T   E   ++ +  + K+
Sbjct: 2049 EEYATLIRETEQIKTESSKVKN 2070

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704

 Score = 42.6 bits (99), Expect = 4e-04
 Identities = 40/320 (12%), Positives = 88/320 (27%), Gaps = 14/320 (4%)

Query: 203 EDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYK 262
                + E        +  L     +  +        +   S S+ ++         + +
Sbjct: 386 RSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKE 445

Query: 263 QNELNARASSLLVER----DDSKQKLEAVQKEYKEL--KLSSENETASNAKRLREKKEEL 316
             EL  R   +L E     D+ +     ++ ++KE   +  S              +  L
Sbjct: 446 LPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVL 505

Query: 317 HQLKEKLELTLDEACENRATIAKFTQEKDDLRKML----DNELGNVKNLKYELQITQETL 372
            +  +      +    +R TI    + + +L   +      +      +   L+     L
Sbjct: 506 DKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNL 565

Query: 373 ETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAE---VKHTLGNSLDEAKRSGEVLA 429
           +  + E   LE  LK                     E       L           +   
Sbjct: 566 DEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESL 625

Query: 430 GELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVS 489
            +     + ++ + +E   +          R+ + K L   Y        +LKE  +  +
Sbjct: 626 KKQEGLLKNIQVSHQEFSKMKQSNNEANL-REEVLKNLATAYDNFVELVANLKEGTKFYN 684

Query: 490 SLNKELQALEKQTSKDKEAR 509
            L + L   + + S    AR
Sbjct: 685 ELTEILVRFQNKCSDIVFAR 704

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	651
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.64
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.48
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.86
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.67
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.37
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	95.24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	94.71
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	94.55
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	93.13
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	92.89
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	92.81
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	92.52
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	92.12
2no2_A	107	HIP-I, huntingtin-interacting protein 1; clathrin	91.22
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	90.63
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	90.43
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	89.19
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	89.01
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	87.9
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	87.56
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	86.5
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	86.2
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	85.16
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	84.83
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	84.74
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	81.68
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	81.56

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.64  E-value=4.6e-08  Score=113.30  Aligned_cols=97  Identities=16%  Similarity=0.201  Sum_probs=35.5

Q ss_pred             hHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHh
Q 036820          312 KKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKD  391 (651)
Q Consensus       312 ke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~  391 (651)
                      .+.++.+++++|...-.....-...+..|..++..++.-|..+......+...+...+..+.....++.++..++++...
T Consensus       862 L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~ee  941 (1184)
T 1i84_S          862 KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEE  941 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444433333323333334444444444444444444444444444444444444444555555555555555


Q ss_pred             hhhHHHHHHHHHHHHHH
Q 036820          392 SCADLETEISRIRAEFA  408 (651)
Q Consensus       392 ~~~~L~~qiskl~~E~~  408 (651)
                      ....++.++.++..+..
T Consensus       942 ~l~el~~e~~~le~el~  958 (1184)
T 1i84_S          942 RSQQLQAEKKKMQQQML  958 (1184)
T ss_dssp             C----------------
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            55555544444444444

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.48  E-value=4.3e-07  Score=105.31  Aligned_cols=11  Identities=18%  Similarity=0.304  Sum_probs=7.1

Q ss_pred             ceeccCCCCCC
Q 036820           47 AMASMRPGDPK   57 (651)
Q Consensus        47 ~~a~~~~~~~~   57 (651)
                      .+-|+.|-+.+
T Consensus       680 fvRCIkPN~~k  690 (1184)
T 1i84_S          680 FVRCIIPNHEK  690 (1184)
T ss_dssp             ECCEECCCSSC
T ss_pred             ceeeeCCCCcC
Confidence            34677777655

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.86  E-value=0.05  Score=69.96  Aligned_cols=80  Identities=10%  Similarity=0.317  Sum_probs=51.7

Q ss_pred             hHHHHhhhHHHhhhhHHHHhHHHhhhhhccccchhHHHHHHHhHHHHHhhhHHHhhchHHHHHHHHHhhhhhhhhhHhhh
Q 036820          515 DLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSK  594 (651)
Q Consensus       515 dLeeaT~SldEmn~~~~~LS~~Le~ans~issle~eKevL~ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ERE~~e~r~k  594 (651)
                      .|.++..-|++++...-.|-.+++.+......|++|-              ..++.-++-|..||..||.|++.-...++
T Consensus      2029 ~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~--------------~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~ 2094 (3245)
T 3vkg_A         2029 KQDEIVATITALEKSIATYKEEYATLIRETEQIKTES--------------SKVKNKVDRSIALLDNLNSERGRWEQQSE 2094 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhhhhccccHHHHHH
Confidence            3444444455555554455555554444333333322              24566788899999999999999999999


Q ss_pred             hhHHHHhhcccchh
Q 036820          595 KLEEELASAKGEIL  608 (651)
Q Consensus       595 kLEeELAsAKGEiL  608 (651)
                      .|+.++..-=|.+|
T Consensus      2095 ~l~~~~~~L~GD~L 2108 (3245)
T 3vkg_A         2095 NFNTQMSTVVGDVV 2108 (3245)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHH
Confidence            99988877767654

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.67  E-value=0.14  Score=50.33  Aligned_cols=132  Identities=17%  Similarity=0.263  Sum_probs=93.6

Q ss_pred             HHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhh
Q 036820          351 LDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAG  430 (651)
Q Consensus       351 Ld~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~  430 (651)
                      +|.++..+.+....+   ...+.+...++..+...+...+.--.+++.+|.++..++..++..+.+.=.           
T Consensus        16 lD~~i~~l~~~~~~l---p~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~-----------   81 (256)
T 3na7_A           16 LDKEIDSLEPLIREK---RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQK-----------   81 (256)
T ss_dssp             HHHHHHHTHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred             HHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence            455555554444444   566777777778888888888888888888888888888777766543221           


Q ss_pred             hHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 036820          431 ELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQ  501 (651)
Q Consensus       431 El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q  501 (651)
                      -|.++     ++..|++..++++.........|.++++++..++|....++..-...+..+..+|..+...
T Consensus        82 ~l~~v-----~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~  147 (256)
T 3na7_A           82 KMSEI-----KSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESL  147 (256)
T ss_dssp             HHHHC-----SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11222     2678889999999999999999999999999999888777776666666666666554443

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.37  E-value=0.37  Score=47.32  Aligned_cols=153  Identities=8%  Similarity=0.088  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHH--hhhhHHhhhhhhhhhhhhhh
Q 036820          157 QLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQ--KLDRIEGLQDKINLLSLELR  234 (651)
Q Consensus       157 QSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLee--Kl~~i~~Lq~kinLLs~e~~  234 (651)
                      ..|-..|..+...+..+...+..++.-+.++..++.+++..+......++..+..|..  .-..++.|+..|..+..++.
T Consensus        28 ~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~  107 (256)
T 3na7_A           28 REKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSN  107 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHH
Confidence            3345667777777777777777777777777777777777777777777777766643  12345566666666666666


Q ss_pred             hhhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHHHHHHHHHhhhch-hhhhhhhhhhhhHhH
Q 036820          235 EKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKELKLSS-ENETASNAKRLREKK  313 (651)
Q Consensus       235 ~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ss-E~~aa~da~lL~eke  313 (651)
                      +-|+.|.++.-.+..++.++..+...+...     -..|...+.+....+.++.++...+..-. +..+..|..||..-+
T Consensus       108 ~lE~eile~~e~ie~~~~~l~~~~~~l~~~-----~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~~~lL~~Ye  182 (256)
T 3na7_A          108 QANREIENLQNEIKRKSEKQEDLKKEMLEL-----EKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPKIYSFYE  182 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            666666666666666666655554443322     22222333334444444444444443322 333445666665544


Q ss_pred             H
Q 036820          314 E  314 (651)
Q Consensus       314 ~  314 (651)
                      .
T Consensus       183 r  183 (256)
T 3na7_A          183 R  183 (256)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.22  E-value=0.39  Score=62.05  Aligned_cols=210  Identities=12%  Similarity=0.137  Sum_probs=141.2

Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhh
Q 036820          156 QQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELRE  235 (651)
Q Consensus       156 eQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~  235 (651)
                      -.++++.++.-..-+..-++++....+-.+.+=.++..+...|..........+.+|.+|=...+.+=.+|.-=+++...
T Consensus      1894 P~syLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~ 1973 (3245)
T 3vkg_A         1894 PRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEI 1973 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677888777777777777777777777777777777777777766666677777777766666665566555555555


Q ss_pred             hhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHH
Q 036820          236 KDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEE  315 (651)
Q Consensus       236 Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~  315 (651)
                      +...++.....++.++.+.+                   ..++++++.|++.+=-                   .-|.++
T Consensus      1974 ~k~~v~~~~~~~~~~~~ei~-------------------~~k~~~e~dL~~A~Pa-------------------~Pkr~~ 2015 (3245)
T 3vkg_A         1974 KQKDARELQVQLDVRNKEIA-------------------VQKVKAYADLEKAEPT-------------------GPLREE 2015 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHCC--------------------------CHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHhhcCCC-------------------ChHHHH
Confidence            54444444333333333222                   2233333333322111                   667889


Q ss_pred             HHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhH
Q 036820          316 LHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCAD  395 (651)
Q Consensus       316 l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~  395 (651)
                      |.+++++|..|-..-.+-+..|+++..+++.+++-++.=+.....|+.+++.++..|..+..=++.|+-|-..=...-..
T Consensus      2016 l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~ 2095 (3245)
T 3vkg_A         2016 VEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSEN 2095 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHH
Confidence            99999999999988888899999999999999999888888888888888888888877777777777666655555555


Q ss_pred             HHHHHHHH
Q 036820          396 LETEISRI  403 (651)
Q Consensus       396 L~~qiskl  403 (651)
                      |..++..|
T Consensus      2096 l~~~~~~L 2103 (3245)
T 3vkg_A         2096 FNTQMSTV 2103 (3245)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            55555544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=95.24  E-value=0.42  Score=50.44  Aligned_cols=108  Identities=13%  Similarity=0.187  Sum_probs=65.4

Q ss_pred             hhhhhHhHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHH----------HHHHHHHHHhHHHhHHHHHHHHHHHHhHH
Q 036820          102 TQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQ----------EQRTKQLKSAKEEQQLLMNKLNSANTTIS  171 (651)
Q Consensus       102 ~q~ekka~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQ----------eeVkkLLKk~kEeeQSLlDQLnSLnsTLt  171 (651)
                      -+.|.......|..++.++...++++..+.+.++.+....+          ..+.+..+...+..+.+...++.....+.
T Consensus       454 l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (597)
T 3oja_B          454 LEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEAD  533 (597)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence            34466667788888899999999999999999888877766          55555555555555555555555555555


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHH
Q 036820          172 GLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLE  209 (651)
Q Consensus       172 SL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae  209 (651)
                      .....+++.++-++.+...++..+..+.........+.
T Consensus       534 ~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~  571 (597)
T 3oja_B          534 AKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKR  571 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            55555554444444444444444444443333333333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.71  E-value=0.48  Score=49.99  Aligned_cols=116  Identities=18%  Similarity=0.194  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhH
Q 036820          396 LETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAE  475 (651)
Q Consensus       396 L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E  475 (651)
                      .+..+.....++.+-++.++...++.....+.+..++..+++..++-..+++..-.+...-.+..+.+++|....=++.+
T Consensus       475 ~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~  554 (597)
T 3oja_B          475 QEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLD  554 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHh
Confidence            34444445555555555555444444444455666666666666666666666555555555666666677776666666


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHh
Q 036820          476 ATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKS  511 (651)
Q Consensus       476 ~t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~  511 (651)
                      ...+.+.+-++=+..+..+++.|++.+..-..+|+.
T Consensus       555 ~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~~~~~  590 (597)
T 3oja_B          555 NKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRRV  590 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTC--------
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence            666666666666777778888888888877777765

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=94.55  E-value=1.1  Score=40.26  Aligned_cols=112  Identities=22%  Similarity=0.310  Sum_probs=64.1

Q ss_pred             hhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhH
Q 036820          302 TASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASD  381 (651)
Q Consensus       302 aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~  381 (651)
                      ++...+-+..++.++.+|+++|...-..-..=..-...|.+++.++...|..|-.+....-+........-...-..+.+
T Consensus         8 ~~~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~e   87 (129)
T 2fxo_A            8 SAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKE   87 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566788999999999997665555444556677777777777777666555433322222222222222234455


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 036820          382 LEKQLKQSKDSCADLETEISRIRAEFAEVKHT  413 (651)
Q Consensus       382 L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~  413 (651)
                      +...|++-...|..|...-.+++.+..+.+..
T Consensus        88 l~~rleeeee~~~~L~~~kkkle~e~~~Lk~~  119 (129)
T 2fxo_A           88 MNKRLEDEEEMNAELTAKKRKLEDECSELKRD  119 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555555554443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=93.13  E-value=1.5  Score=51.46  Aligned_cols=67  Identities=15%  Similarity=0.195  Sum_probs=29.3

Q ss_pred             HHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 036820          348 RKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTL  414 (651)
Q Consensus       348 r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l  414 (651)
                      ...+..|+..+++=-++++..+..+....+++..|.+++++.+...+.+..+...+......+++.|
T Consensus       955 ~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L 1021 (1080)
T 2dfs_A          955 EITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHET 1021 (1080)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444433333333344444444455555555555544444444444444433333333333

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=92.89  E-value=5  Score=36.08  Aligned_cols=107  Identities=17%  Similarity=0.255  Sum_probs=84.6

Q ss_pred             HHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHh
Q 036820          369 QETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQN  448 (651)
Q Consensus       369 qe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~  448 (651)
                      .+-+...-.++.+|.+.|........+|+.+..++..|-+.....|+.-        ..+..+..-..+-|.+.+.+|+.
T Consensus        12 e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E--------~~~l~e~EE~~~~L~~~k~eLe~   83 (129)
T 2fxo_A           12 EKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAE--------QDNLADAEERCDQLIKNKIQLEA   83 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhHHHHHHHHHHHHHHHHH
Confidence            4556666677777888888888888888888888888888888777631        22334556667778888889999


Q ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHH
Q 036820          449 VSHELEATAENRDSLRKELVNIYKKAEATANDLKE  483 (651)
Q Consensus       449 ~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~  483 (651)
                      --+++.+-.+.-..-+.+|....||++....+|+.
T Consensus        84 ~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~  118 (129)
T 2fxo_A           84 KVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKR  118 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998888888899999999999888877765

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=92.81  E-value=6.6  Score=37.14  Aligned_cols=108  Identities=26%  Similarity=0.357  Sum_probs=68.4

Q ss_pred             hHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHH--------------HHHHHHHHHHHHHHHH---HhcchHHHHh
Q 036820          361 LKYELQITQETLETTRNEASDLEKQLKQSKDSCADLE--------------TEISRIRAEFAEVKHT---LGNSLDEAKR  423 (651)
Q Consensus       361 L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~--------------~qiskl~~E~~e~ke~---l~~~l~eak~  423 (651)
                      +-..|.-+++-+..+-..+..|+++|..+-+.++.|+              .+|-.|+.-+.++-..   -.|++..-+.
T Consensus        26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk  105 (155)
T 2efr_A           26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK  105 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5556666666666666666666666666555555443              3333344333333221   1133333333


Q ss_pred             hhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHH
Q 036820          424 SGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELV  468 (651)
Q Consensus       424 ~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~  468 (651)
                      .-.-|=++|...|+-.+..+++|+.|-++|.+.....+.|+.|+-
T Consensus       106 ~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~  150 (155)
T 2efr_A          106 SIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVA  150 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            344566788888999999999999999999998888888887754

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=92.52  E-value=6.4  Score=38.34  Aligned_cols=120  Identities=17%  Similarity=0.161  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHH
Q 036820          133 DFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEER  212 (651)
Q Consensus       133 dFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eL  212 (651)
                      .|-.++.+++.+...-..++++-++-|=..|..+.++...+...+.....-++..+.+.....+.   +...+-.++.++
T Consensus        21 ~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e---~~~~~~~Lq~el   97 (189)
T 2v71_A           21 KYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ---SYKQVSVLEDDL   97 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence            35556666667766766778888888989999999999999988888888888888777666554   344566777777


Q ss_pred             HHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhh
Q 036820          213 KQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELK  255 (651)
Q Consensus       213 eeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~  255 (651)
                      ..--...+.|+.+|-=|-+..+|-|-..|..++||.--|.-|+
T Consensus        98 ~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln  140 (189)
T 2v71_A           98 SQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLN  140 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHH
Confidence            7777888999999999999999999999999999877665443

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=92.12  E-value=0.67  Score=51.18  Aligned_cols=111  Identities=14%  Similarity=0.220  Sum_probs=84.8

Q ss_pred             hhhhHhcc-cchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHH
Q 036820          270 ASSLLVER-DDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLR  348 (651)
Q Consensus       270 v~sL~~ek-~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r  348 (651)
                      ++.|+... -++...|+.|..+|.++.     +...|+.-+      ..++-+.|...+..+..|..++-+++.||+.-.
T Consensus        51 LQglLdkqErDltkrINELKnqLEdls-----KnsKdseqy------~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrI  119 (562)
T 3ghg_A           51 MKGLIDEVNQDFTNRINKLKNSLFEYQ-----KNNKDSHSL------TTNIMEILRGDFSSANNRDNTYNRVSEDLRSRI  119 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTHHH-----HHHHHHHHH------HHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             hhhhHHhhcCcHHHHHHHHHHHHHHHH-----hhchhHHHH------HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence            56665544 367889999999999992     333444433      456666676677777778888888888888888


Q ss_pred             HHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhh
Q 036820          349 KMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCA  394 (651)
Q Consensus       349 ~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~  394 (651)
                      .-|..+|.+..   ..|++.|..|++-|.+..+|+...+--.+.|+
T Consensus       120 qyLKekVdnQl---snIrvLQsnLedq~~kIQRLEvDIdiqirsCK  162 (562)
T 3ghg_A          120 EVLKRKVIEKV---QHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCR  162 (562)
T ss_dssp             HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            88888887766   55678888999999999999999888888885

>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}

Probab=91.22  E-value=3.1  Score=37.00  Aligned_cols=89  Identities=19%  Similarity=0.217  Sum_probs=68.5

Q ss_pred             hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHH
Q 036820          378 EASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATA  457 (651)
Q Consensus       378 e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~  457 (651)
                      .-++..++|.-++..+.+++..+..|..++.+++..-..+..+.-.+-+.|=.||+.-++=|...++.++.+...=...+
T Consensus         9 K~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~   88 (107)
T 2no2_A            9 KNAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWA   88 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35788999999999999999999999999999997777777777777777778888877766667766666666544444


Q ss_pred             HhhhhhhHH
Q 036820          458 ENRDSLRKE  466 (651)
Q Consensus       458 e~rd~L~kE  466 (651)
                      ...+.+++|
T Consensus        89 ~~~~~l~~E   97 (107)
T 2no2_A           89 AEFAELEKE   97 (107)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444444

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=90.63  E-value=5.4  Score=47.01  Aligned_cols=9  Identities=33%  Similarity=0.623  Sum_probs=5.4

Q ss_pred             eccCCCCCC
Q 036820           49 ASMRPGDPK   57 (651)
Q Consensus        49 a~~~~~~~~   57 (651)
                      =|+-|-+.+
T Consensus       660 RCIkPN~~k  668 (1080)
T 2dfs_A          660 RCIKPNDFK  668 (1080)
T ss_dssp             EEECCCSSC
T ss_pred             EEecCCCCC
Confidence            466666644

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=90.43  E-value=13  Score=35.76  Aligned_cols=117  Identities=11%  Similarity=0.188  Sum_probs=64.6

Q ss_pred             chhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 036820          333 NRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKH  412 (651)
Q Consensus       333 ~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke  412 (651)
                      ....|..|.+.++++...|-.|.+++-.||-..--..-++...=.-+.+|...+..+...+..|+.++..|+..+..-+.
T Consensus         4 ~neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~   83 (168)
T 3o0z_A            4 ANEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERR   83 (168)
T ss_dssp             ------CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677889999999999999999999988875433333333333344555555555555666666666666666665554


Q ss_pred             HHhcchH---HHHhhhhhhhhhHHhHHHHHHHhHHHHHhh
Q 036820          413 TLGNSLD---EAKRSGEVLAGELFAAKEVLKKASEELQNV  449 (651)
Q Consensus       413 ~l~~~l~---eak~~~~~Ls~El~s~ke~l~k~~eeL~~~  449 (651)
                      ..+..-+   +...--..|-.||..+|+-+.++..+....
T Consensus        84 ~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L  123 (168)
T 3o0z_A           84 DRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEA  123 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4333221   222233344445555555555444444433

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=89.19  E-value=1.8  Score=36.18  Aligned_cols=70  Identities=20%  Similarity=0.254  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHH
Q 036820          183 FIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKET  252 (651)
Q Consensus       183 tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~  252 (651)
                      =+..++...+.+..++..++.....++......-+.|..|+-||.+|-.++..-++.+...+..|...+.
T Consensus         7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek   76 (81)
T 1ic2_A            7 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADK   76 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555555555555556666666666778889999999999998888888888888776654

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=89.01  E-value=2.6  Score=46.62  Aligned_cols=45  Identities=16%  Similarity=0.259  Sum_probs=19.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHH
Q 036820          130 LEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLG  174 (651)
Q Consensus       130 lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~  174 (651)
                      -+.||-++|-++..+++++-+..++.++-.....+.++.++....
T Consensus        58 qErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~  102 (562)
T 3ghg_A           58 VNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN  102 (562)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH
T ss_pred             hcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh
Confidence            344444444444444444443344444444444444444444333

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=87.90  E-value=4.1  Score=35.48  Aligned_cols=74  Identities=20%  Similarity=0.199  Sum_probs=52.0

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHH
Q 036820          179 NEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKET  252 (651)
Q Consensus       179 nek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~  252 (651)
                      .|+.-+..++...+.+...+..++..+..++.....+=+.|..||-||.+|-.++..-+..+...+..|-..+.
T Consensus         6 aIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek   79 (101)
T 3u1c_A            6 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEE   79 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555666666666666666667777777777788889999999988888877777777666655544

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=87.56  E-value=4.5  Score=34.99  Aligned_cols=73  Identities=22%  Similarity=0.280  Sum_probs=54.1

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhH
Q 036820          179 NEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKE  251 (651)
Q Consensus       179 nek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE  251 (651)
                      .|+.-+..++...+.+...+..++..+..++......-+.|..|+.||..|..++..-++.+...+..|-..+
T Consensus         6 ~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~e   78 (101)
T 3u59_A            6 AIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAE   78 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555666666666666666677777777777788888999999999999998888888887765554

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=86.50  E-value=15  Score=31.94  Aligned_cols=12  Identities=25%  Similarity=0.598  Sum_probs=6.9

Q ss_pred             hHHhhhhhhhhh
Q 036820          218 RIEGLQDKINLL  229 (651)
Q Consensus       218 ~i~~Lq~kinLL  229 (651)
                      .+..|+-||-||
T Consensus        87 ev~~L~Rriqll   98 (101)
T 3u1c_A           87 EVASLNRRIQLV   98 (101)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            455566666655

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=85.16  E-value=26  Score=33.14  Aligned_cols=100  Identities=18%  Similarity=0.202  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHHH---HHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHH
Q 036820          135 ESKLQNEQEQRTKQL---KSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEE  211 (651)
Q Consensus       135 EkRLKevQeeVkkLL---Kk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~e  211 (651)
                      +..|+.+..-++.|-   .+..+-...+-+++..+...+...-.+-.-+...|..+...|+++...+..+..-...+..+
T Consensus        48 EeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~e  127 (155)
T 2efr_A           48 EEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEE  127 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444   22344456778888888888888888888888888888888888888888888888888888


Q ss_pred             HHHhhhhHHhhhhhhhhhhhhhh
Q 036820          212 RKQKLDRIEGLQDKINLLSLELR  234 (651)
Q Consensus       212 LeeKl~~i~~Lq~kinLLs~e~~  234 (651)
                      |..-|..|..++.+.--|.-+|+
T Consensus       128 Ld~tl~el~~~~~~~~~~~~~~~  150 (155)
T 2efr_A          128 MKQLEDKVEELLSKNYHLENEVA  150 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccchHHHHHHHH
Confidence            88888888887777666665554

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=84.74  E-value=19  Score=31.14  Aligned_cols=73  Identities=12%  Similarity=0.204  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHh-------hhhHHhhhhhhhhhh
Q 036820          158 LLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQK-------LDRIEGLQDKINLLS  230 (651)
Q Consensus       158 SLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeK-------l~~i~~Lq~kinLLs  230 (651)
                      ..+|+...+...+.............+..+..++..+...+..++.....+...|++.       =..+..|+-||-||-
T Consensus        20 ~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE   99 (101)
T 3u59_A           20 NAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE   99 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3344444444444444444444444444444444444444444444444333333322       124666777776663

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=81.68  E-value=27  Score=31.22  Aligned_cols=45  Identities=18%  Similarity=0.307  Sum_probs=23.0

Q ss_pred             HHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 036820          363 YELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEF  407 (651)
Q Consensus       363 ~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~  407 (651)
                      +.++.++.-+...|..+..|.-+|+..+..|..|+..|......+
T Consensus        29 ~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~   73 (129)
T 3tnu_B           29 DDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRG   73 (129)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            345555555566666666666666666666666655554444433

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=81.56  E-value=4.7  Score=37.16  Aligned_cols=58  Identities=26%  Similarity=0.350  Sum_probs=42.8

Q ss_pred             hhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHH
Q 036820          342 QEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETE  399 (651)
Q Consensus       342 ~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~q  399 (651)
                      .+.+.++..++.--..+..|||+|-.++..++..+.+..+|.++++....-..+|+++
T Consensus        75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~  132 (138)
T 3hnw_A           75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETE  132 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555566665667778999999999999998888888888877766666555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	651
d1eq1a_	166	Apolipophorin-III {Manduca sexta [TaxId: 7130]}	84.84

>d1eq1a_ a.63.1.1 (A:) Apolipophorin-III {Manduca sexta [TaxId: 7130]}

class: All alpha proteins
fold: Apolipophorin-III
superfamily: Apolipophorin-III
family: Apolipophorin-III
domain: Apolipophorin-III
species: Manduca sexta [TaxId: 7130]

Probab=84.84  E-value=1.1  Score=40.47  Aligned_cols=87  Identities=15%  Similarity=0.109  Sum_probs=66.5

Q ss_pred             HHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhh----hhHHhhhhhhhhh
Q 036820          154 EEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKL----DRIEGLQDKINLL  229 (651)
Q Consensus       154 EeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl----~~i~~Lq~kinLL  229 (651)
                      +..+.|++.+.+++.|+.++|+.+.++++++...+...+.++..+.+++..+..+.+-+.|.-    +.|..-...|.++
T Consensus         7 ~~~~~~~~~a~e~~~t~~eq~~~~~n~knt~~~~~a~ke~a~~v~e~~~~~~~~l~~~~~Ea~~~a~dav~qa~~nle~~   86 (166)
T d1eq1a_           7 NAFEEMEKHAKEFQKTFSEQFNSLVNSKNTQDFNKALKDGSDSVLQQLSAFSSSLQGAISDANGKAKEALEQARQNVEKT   86 (166)
T ss_dssp             CCSTHHHHHHHHHHHHHHHHHHHHTSSCCSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSTHHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345679999999999999999999999999999999999998888887777777766665543    3444455666666


Q ss_pred             hhhhhhhhhhh
Q 036820          230 SLELREKDDGV  240 (651)
Q Consensus       230 s~e~~~Ke~~i  240 (651)
                      -.++.+--+.|
T Consensus        87 Aeelrk~~e~i   97 (166)
T d1eq1a_          87 AEELRKAHPDV   97 (166)
T ss_dssp             HHGGGGCSHHH
T ss_pred             HHHHHHhhHHH
Confidence            66665544444