Citrus Sinensis ID: 036857

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Protein Sequence
MMLHMINNNRPSYWNSNKFEHPATSNTIATDFDMNKALVDDYWGPYTGKSSLIAAMADLDLKEFQSNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTFRHYLFEKIEERLAKIQATPAEVPGELMK
Secondary Structure (PSIPRED)
cEEEEEEccccccccccccccccccccccccccccHHHHcccccccccHHHHHHHHccccHHHHHccccEEEEEEcccccccccccccHHHHHHHcccccccccccccEEEEEEcccccccccccccccccccEEEEccccHHHHHHHHHHHHHHcccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccccEEcccccccHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHccHcEEcccccEEEEEEEcccEEEcccccEEEEHHHHHHHcccHccccccEEEEEEcccHHcccHHHcccccccEEEEEccccccccHHHHHHHHHHHccccHHHHHHHHHc
Coil and Loop (DISEMBL)
mmlhminnnrpsywnsnkfehpatsntiatdfdmnkalvddywgpytgksSLIAAMADLDLKEFQSNSRSILVIEDAVTSFESNAYNSVALSALLKFVDglwsssgdgrilvmttdykdhidpvplrpscmdmhfhlsshTFRHYLFEKIEERLAKIqatpaevpgelmk
Flexible Loop (DISEMBL)
MMLHMINNNRPSYWNSNKFEHPATSNTIATDFDMNKALVDDYWGPYTGKSSLIAAMADLDLKEFQSNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTFRHYLFEKIEERLAKIqatpaevpgelmk
Low Complexity Region (SEG)
MMLHMINNNRPSYWNSNKFEHPATSNTIATDFDMNKALVDDYWGPYTGKSSLIAAMADLDLKEFQSNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTFRHYLFEKIEERLAKIQATPAEVPGELMK
Disordered region (IsUnstruct)
*************************NTIATDFDMNKALVDDYWGPYTGKSSLIAAMADLDLKEFQSNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTFRHYLFEKIEERLAK**************
Disordered Region (DISOPRED)
MMLHM**NNRPSYWNSNKFEHPATSNTIATDFDMNKALVDDYWGPYTGKSSLIAAMADLDLKEFQSNSRSILVIEDAVTSFESNAYN*VA**ALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTFRHYLFEKIEERLAKIQATPAEVPGELMK
Disordered Region (DISEMBL)
MMLHMINNNRPSYWNSNKFEHPATSNTIATDFDMNKALVDDYWGPYTGKSSLIAAMADLDLKEFQSNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTFRHYLFEKIEERLAKIQATPAEVPGELMK
Disordered Region (DISPRO)
MMLHMINNNRPSYWNSNKFEHPATSNTIATDFDMNKALVDDYWGPYTGKSSLIAAMADLDLKEFQSNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTFRHYLFEKIEERLAKIQATPAEVPGELMK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMLHMINNNRPSYWNSNKFEHPATSNTIATDFDMNKALVDDYWGPYTGKSSLIAAMADLDLKEFQSNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTFRHYLFEKIEERLAKIQATPAEVPGELMK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	170	2.2.26 [Sep-21-2011]
Q54HY8	421	Probable mitochondrial ch	no	no	0.747	0.301	0.284	0.0001
Q9P6Q3	449	Probable mitochondrial ch	yes	no	0.576	0.218	0.283	0.0001
Q9CZP5	418	Mitochondrial chaperone B	yes	no	0.588	0.239	0.279	0.0003
Q5E9H5	419	Mitochondrial chaperone B	yes	no	0.717	0.291	0.262	0.0004
Q9Y276	419	Mitochondrial chaperone B	yes	no	0.588	0.238	0.271	0.0008

>sp|Q54HY8|BCS1A_DICDI Probable mitochondrial chaperone BCS1-A OS=Dictyostelium discoideum GN=bcs1la PE=3 SV=1

 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 49/176 (27%)

Query: 42  YWGPYTGKSSLIAAMA---------------DLDLKEFQ-----SNSRSILVIEDAVTSF 81
           Y  P  GKSSLI A+A               D+D K+       +  +SIL+IED   +F
Sbjct: 227 YGEPGNGKSSLINAIAGELNLDICIVSLSSKDIDDKQINHLLNNAPPKSILLIEDIDAAF 286

Query: 82  ESNAYN------------SVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPS 129
           +S+  N            S+  S LL  +DG+  +S +GRIL MTT+  + +D   +R  
Sbjct: 287 KSHRDNVDSNNNNSNNNNSLTYSGLLNALDGV--ASQEGRILFMTTNKIELLDSALIREG 344

Query: 130 CMDMHFHLSSHT-------FRHY--------LFEKIEERLAKIQATPAEVPGELMK 170
            +D+   +S+ T       F H+        L  +  E L   Q + +++ G L+K
Sbjct: 345 RIDLKIKVSNATKSQAAQLFTHFYNLPTDNQLAIRFSENLHDHQLSMSQIQGFLLK 400

Chaperone necessary for the assembly of mitochondrial respiratory chain complex III.
Dictyostelium discoideum (taxid: 44689)

>sp|Q9P6Q3|BCS1_SCHPO Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1

 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 29/127 (22%)

Query: 42  YWGPYTGKSSLIAAMA-DLD-----------------LKEFQSN--SRSILVIEDAVTSF 81
           Y  P +GK+S + A+A +LD                 L    SN   ++++++ED  ++F
Sbjct: 248 YGPPGSGKTSFLYALAGELDYDICVLNLAEKGLTDDRLNHLLSNVPPKAVVLLEDVDSAF 307

Query: 82  ESNA-------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMH 134
           +          + +V  S LL  +DG+ SS  D RI+ MTT++ + +DP  +RP  +D+ 
Sbjct: 308 QGRERSGEVGFHANVTFSGLLNALDGVTSS--DERIIFMTTNHPEKLDPALVRPGRVDVK 365

Query: 135 FHLSSHT 141
            +L + T
Sbjct: 366 AYLGNAT 372

Chaperone necessary for the assembly of mitochondrial respiratory chain complex III.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9CZP5|BCS1_MOUSE Mitochondrial chaperone BCS1 OS=Mus musculus GN=Bcs1l PE=1 SV=1

 Score = 45.1 bits (105), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 29/129 (22%)

Query: 68  SRSILVIEDAVTSFES-----------NAYNSVALSALLKFVDGLWSSSGDGRILVMTTD 116
            +S++++ED   +F S                +  S LL  +DG+  +S + RI+ MTT+
Sbjct: 275 QQSLVLLEDVDAAFLSRDLAVENPIKYQGLGRLTFSGLLNALDGV--ASTEARIVFMTTN 332

Query: 117 YKDHIDPVPLRPSCMDM--------HFHLSSHTFRHY------LFEKIEERLAKI--QAT 160
           Y D +DP  +RP  +D+        H+ L+    R Y      L E   E + K   + +
Sbjct: 333 YIDRLDPALIRPGRVDLKEYVGYCSHWQLTQMFQRFYPGQAPSLAENFAEHVLKATSEIS 392

Query: 161 PAEVPGELM 169
           PA+V G  M
Sbjct: 393 PAQVQGYFM 401

Chaperone necessary for the assembly of mitochondrial respiratory chain complex III. Plays an important role in the maintenance of mitochondrial tubular networks, respiratory chain assembly and formation of the LETM1 complex.

Mus musculus (taxid: 10090)

>sp|Q5E9H5|BCS1_BOVIN Mitochondrial chaperone BCS1 OS=Bos taurus GN=BCS1L PE=2 SV=1

 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 72/179 (40%), Gaps = 57/179 (31%)

Query: 42  YWGPYTGKSSLIAAMADLDLKEFQ------------------------SNSRSILVIEDA 77
           Y  P  GKSS I A+A     E Q                        +  +S++++ED 
Sbjct: 229 YGPPGCGKSSFITALAG----ELQHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDV 284

Query: 78  VTSFES-----------NAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPL 126
             +F S                +  S LL  +DG+  +S + RI+ MTT++ D +DP  +
Sbjct: 285 DAAFLSRDLAAENPIKYQGLGRLTFSGLLNALDGV--ASTEARIVFMTTNHIDRLDPALI 342

Query: 127 RPSCMDM--------HFHLSSHTFRHY------LFEKIEERL--AKIQATPAEVPGELM 169
           RP  +DM         + L+    R Y      L E   +R+  A  Q +PA+V G  M
Sbjct: 343 RPGRVDMKEYVGHCSRWQLTQMFQRFYPGQATSLAENFADRVLQATTQISPAQVQGYFM 401

Chaperone necessary for the assembly of mitochondrial respiratory chain complex III. Plays an important role in the maintenance of mitochondrial tubular networks, respiratory chain assembly and formation of the LETM1 complex.

Bos taurus (taxid: 9913)

>sp|Q9Y276|BCS1_HUMAN Mitochondrial chaperone BCS1 OS=Homo sapiens GN=BCS1L PE=1 SV=1

 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 29/129 (22%)

Query: 68  SRSILVIEDAVTSFES-----------NAYNSVALSALLKFVDGLWSSSGDGRILVMTTD 116
            +S++++ED   +F S                +  S LL  +DG+  +S + RI+ MTT+
Sbjct: 275 QQSLVLLEDVDAAFLSRDLAVENPVKYQGLGRLTFSGLLNALDGV--ASTEARIVFMTTN 332

Query: 117 YKDHIDPVPLRPSCMDM--------HFHLSSHTFRHY------LFEKIEERLAKI--QAT 160
           + D +DP  +RP  +D+        H+ L+    R Y      L E   E + +   Q +
Sbjct: 333 HVDRLDPALIRPGRVDLKEYVGYCSHWQLTQMFQRFYPGQAPSLAENFAEHVLRATNQIS 392

Query: 161 PAEVPGELM 169
           PA+V G  M
Sbjct: 393 PAQVQGYFM 401

Chaperone necessary for the assembly of mitochondrial respiratory chain complex III. Plays an important role in the maintenance of mitochondrial tubular networks, respiratory chain assembly and formation of the LETM1 complex.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
224066152	446	predicted protein [Populus trichocarpa]	0.988	0.376	0.471	3e-41
255538722	435	ATP binding protein, putative [Ricinus c	1.0	0.390	0.449	4e-39
449460285	461	PREDICTED: probable mitochondrial chaper	1.0	0.368	0.429	7e-35
297738388	479	unnamed protein product [Vitis vinifera]	0.923	0.327	0.390	4e-28
449520950	468	PREDICTED: mitochondrial chaperone BCS1-	0.970	0.352	0.380	4e-28
297738387	471	unnamed protein product [Vitis vinifera]	0.923	0.333	0.390	4e-28
147865124	476	hypothetical protein VITISV_036161 [Viti	0.923	0.329	0.390	4e-28
359473572	543	PREDICTED: peroxisomal biogenesis factor	0.923	0.289	0.390	6e-28
255547776	503	ATP binding protein, putative [Ricinus c	0.923	0.312	0.399	1e-27
30693380	451	cytochrome BC1 synthesis-like protein [A	0.923	0.348	0.382	3e-27

>gi|224066152|ref|XP_002302018.1| predicted protein [Populus trichocarpa] gi|222843744|gb|EEE81291.1| predicted protein [Populus trichocarpa]

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 106/225 (47%), Positives = 126/225 (56%), Gaps = 57/225 (25%)

Query: 3   LHMINNNRPSYWNSNKFEHPATSNTIATDFDMNKALVDDY----------------WG-- 44
           LH I+ N P YW S KF+HPAT +TIA D +M + L++D                 W   
Sbjct: 195 LHTIDYNGPDYWGSIKFDHPATFDTIAMDPEMKRELIEDLDRFVESREFYRRVGKAWKRG 254

Query: 45  ------PYTGKSSLIAAMA--------DLDLKEFQSNS-----------RSILVIEDAVT 79
                 P TGKSSL+AAMA        DLDLKE Q NS           RS+LVIED   
Sbjct: 255 YLFHGPPGTGKSSLVAAMANYLRFDVYDLDLKEVQCNSDLRRLLIGTGNRSMLVIEDIDR 314

Query: 80  SFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSS 139
           SFES   + V LS LL F+DGLWSSSGD RILV TT++KD +DP  LRP  MD+H H+S 
Sbjct: 315 SFESVEDDEVTLSGLLNFIDGLWSSSGDERILVFTTNHKDQLDPALLRPGRMDVHLHMSY 374

Query: 140 HTF--------------RHYLFEKIEERLAKIQATPAEVPGELMK 170
            TF               H LF +I+E + K+QATPAEV GELMK
Sbjct: 375 CTFNGFKTLALNYLRLQEHPLFGEIKELIEKVQATPAEVAGELMK 419

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538722|ref|XP_002510426.1| ATP binding protein, putative [Ricinus communis] gi|223551127|gb|EEF52613.1| ATP binding protein, putative [Ricinus communis]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 102/227 (44%), Positives = 123/227 (54%), Gaps = 57/227 (25%)

Query: 1   MMLHMINNNRPSYWNSNKFEHPATSNTIATDFDMNKALVDD------------------- 41
           + LH I+ N   YW S  F+HPA  +TIA D +M + L+ D                   
Sbjct: 185 LKLHTIDYNGTDYWGSINFDHPANFDTIAMDPEMKEGLIKDLDQFTARKEFYKRVGKAWK 244

Query: 42  -----YWGPYTGKSSLIAAMA--------DLDLKEFQSNS-----------RSILVIEDA 77
                Y  P TGKSSL+AAMA        DLDLKE Q NS           +SILV+ED 
Sbjct: 245 RGYLFYGPPGTGKSSLVAAMANYLKFDVYDLDLKEVQCNSDLRRLLIGIGNQSILVVEDI 304

Query: 78  VTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHL 137
             SFES   + V LS LL F+DGLWSS GD RI+V TT++KD + PV LRP  MDMH HL
Sbjct: 305 DRSFESVEDDKVTLSGLLNFIDGLWSSCGDERIVVFTTNHKDQLVPVLLRPGRMDMHLHL 364

Query: 138 SSHTFR--------------HYLFEKIEERLAKIQATPAEVPGELMK 170
           S  TF               H+LF++IE+ L K Q+TPAEV GELMK
Sbjct: 365 SYCTFNGFKTLASNYLHIKDHHLFDEIEQLLEKAQSTPAEVAGELMK 411

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460285|ref|XP_004147876.1| PREDICTED: probable mitochondrial chaperone BCS1-B-like [Cucumis sativus] gi|449511627|ref|XP_004164010.1| PREDICTED: probable mitochondrial chaperone BCS1-B-like [Cucumis sativus]

 Score =  151 bits (382), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 103/240 (42%), Positives = 122/240 (50%), Gaps = 70/240 (29%)

Query: 1   MMLHMINNNRPSYWNSNKFEHPATSNTIATDFDMNKALVDD------------------- 41
           M LH I+ N   YW S    HPAT +TIA + +  KAL+DD                   
Sbjct: 188 MKLHTIDYNGTHYWGSIDLNHPATFDTIAMNPETKKALIDDLNTFIERKEYYRRVGRAWK 247

Query: 42  -----YWGPYTGKSSLIAAMA--------DLDLKEFQSNS-----------RSILVIEDA 77
                Y  P TGKSSLIAAMA        D+DLKE Q NS           RSILVIED 
Sbjct: 248 RGYLLYGPPGTGKSSLIAAMANYLKFDIYDMDLKEVQYNSDLRRLLIGTGNRSILVIEDI 307

Query: 78  VTSFE-----SNAYNS--------VALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPV 124
             S E     S++ N         + LS LL F+DGLWSS GD RI+V TT++ D +DP 
Sbjct: 308 DCSIELQDRSSDSKNQTKSTEDEKITLSGLLNFIDGLWSSCGDERIVVFTTNHMDRLDPA 367

Query: 125 PLRPSCMDMHFHLSSHTF--------------RHYLFEKIEERLAKIQATPAEVPGELMK 170
            LRP  MDMH H+S   F               H LFEKI+E L K++ATPAE+ GELMK
Sbjct: 368 LLRPGRMDMHLHMSYCDFGGFKILAYNYLLIQEHPLFEKIKEFLNKVEATPAELAGELMK 427

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738388|emb|CBI27589.3| unnamed protein product [Vitis vinifera]

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/223 (39%), Positives = 109/223 (48%), Gaps = 66/223 (29%)

Query: 14  WNSNKFEHPATSNTIATDFDMNKALVDD------------------------YWGPYTGK 49
           W S   +HP+T  T+A D  + + L+ D                        Y  P TGK
Sbjct: 184 WGSINLDHPSTFETLAMDLKLKEDLIKDLDRFVRRRKFYKRVGKAWKRGYLLYGPPGTGK 243

Query: 50  SSLIAAMA--------DLDLKEFQSNS-----------RSILVIEDAVTSFE-----SNA 85
           +SLIAAMA        DL+L   Q NS           RSILVIED   S E     +  
Sbjct: 244 TSLIAAMANYLKFDVYDLELTSLQRNSQLRKLLVSTKNRSILVIEDIDCSTELQDRQAGR 303

Query: 86  YNS----VALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHT 141
           YN     + LS LL F+DGLWSS GD RI+V TT++KD IDP  LRP  MDMH H+S  T
Sbjct: 304 YNQPTTQLTLSGLLNFIDGLWSSCGDERIIVFTTNHKDRIDPALLRPGRMDMHIHMSYCT 363

Query: 142 ---FR-----------HYLFEKIEERLAKIQATPAEVPGELMK 170
              F+           H LF +IE  + +++ TPAE+  ELMK
Sbjct: 364 PYGFKTLASNYLGVSNHRLFTEIERLITEVEVTPAEIAEELMK 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520950|ref|XP_004167495.1| PREDICTED: mitochondrial chaperone BCS1-like [Cucumis sativus]

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/234 (38%), Positives = 115/234 (49%), Gaps = 69/234 (29%)

Query: 6   INNNRPSYWNSNKFEHPATSNTIATDFDMNKALVDD------------------------ 41
           +   R   W S +FEHPAT +T+A D D+ K ++DD                        
Sbjct: 194 LGGKRQGKWGSVRFEHPATFDTLALDPDLKKMIIDDLDRFVKRKEFYRKVGKAWKRGYLL 253

Query: 42  YWGPYTGKSSLIAAMA--------DLDLKEFQSN-----------SRSILVIEDAVTS-- 80
           Y  P TGKSSLIAAMA        DLDL +  SN           +RSILVIED   S  
Sbjct: 254 YGPPGTGKSSLIAAMANYLKFDIYDLDLSDVYSNQSLRNSLLSTTNRSILVIEDIDCSVN 313

Query: 81  -----FESN---AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMD 132
                FE       + + LS +L F+DGLWSS GD RI++ TT++K+ +DP  LRP  MD
Sbjct: 314 LQNRKFEEKFEPPKSRLTLSGMLNFIDGLWSSCGDERIIIFTTNHKEQLDPALLRPGRMD 373

Query: 133 MHFHL---SSHTFR-------------HYLFEKIEERLAKIQATPAEVPGELMK 170
           +H HL   SS  F+             H L+E+I+  +  I  TPAE+  ELMK
Sbjct: 374 VHIHLGYCSSKMFKVLATNYLGAEVTGHRLYEEIKGLIDCINVTPAEIAEELMK 427

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738387|emb|CBI27588.3| unnamed protein product [Vitis vinifera]

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/223 (39%), Positives = 109/223 (48%), Gaps = 66/223 (29%)

Query: 14  WNSNKFEHPATSNTIATDFDMNKALVDD------------------------YWGPYTGK 49
           W S   +HP+T  T+A D  + + L+ D                        Y  P TGK
Sbjct: 184 WGSINLDHPSTFETLAMDLKLKEDLIKDLDRFVRRRKFYKRVGKAWKRGYLLYGPPGTGK 243

Query: 50  SSLIAAMA--------DLDLKEFQSNS-----------RSILVIEDAVTSFE-----SNA 85
           +SLIAAMA        DL+L   Q NS           RSILVIED   S E     +  
Sbjct: 244 TSLIAAMANYLKFDVYDLELTSLQRNSQLRKLLVSTKNRSILVIEDIDCSTELQDRQAGR 303

Query: 86  YNS----VALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHT 141
           YN     + LS LL F+DGLWSS GD RI+V TT++KD IDP  LRP  MDMH H+S  T
Sbjct: 304 YNQPTTQLTLSGLLNFIDGLWSSCGDERIIVFTTNHKDRIDPALLRPGRMDMHIHMSYCT 363

Query: 142 ---FR-----------HYLFEKIEERLAKIQATPAEVPGELMK 170
              F+           H LF +IE  + +++ TPAE+  ELMK
Sbjct: 364 PYGFKTLASNYLGVSNHRLFTEIERLITEVEVTPAEIAEELMK 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865124|emb|CAN79835.1| hypothetical protein VITISV_036161 [Vitis vinifera]

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/223 (39%), Positives = 109/223 (48%), Gaps = 66/223 (29%)

Query: 14  WNSNKFEHPATSNTIATDFDMNKALVDD------------------------YWGPYTGK 49
           W S   +HP+T  T+A D  + + L+ D                        Y  P TGK
Sbjct: 180 WGSINLDHPSTFETLAMDLKLKEDLIKDLDRFVRRRKFYKRVGKAWKRGYLLYGPPGTGK 239

Query: 50  SSLIAAMA--------DLDLKEFQSNS-----------RSILVIEDAVTSFE-----SNA 85
           +SLIAAMA        DL+L   Q NS           RSILVIED   S E     +  
Sbjct: 240 TSLIAAMANYLKFDVYDLELTSLQRNSQLRKLLVSTKNRSILVIEDIDCSTELQDRQAGR 299

Query: 86  YNS----VALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHT 141
           YN     + LS LL F+DGLWSS GD RI+V TT++KD IDP  LRP  MDMH H+S  T
Sbjct: 300 YNQPTTQLTLSGLLNFIDGLWSSCGDERIIVFTTNHKDRIDPALLRPGRMDMHIHMSYCT 359

Query: 142 ---FR-----------HYLFEKIEERLAKIQATPAEVPGELMK 170
              F+           H LF +IE  + +++ TPAE+  ELMK
Sbjct: 360 PYGFKTLASNYLGVSNHRLFTEIERLITEVEVTPAEIAEELMK 402

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473572|ref|XP_002265232.2| PREDICTED: peroxisomal biogenesis factor 6-like [Vitis vinifera]

 Score =  129 bits (323), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 87/223 (39%), Positives = 109/223 (48%), Gaps = 66/223 (29%)

Query: 14  WNSNKFEHPATSNTIATDFDMNKALVDD------------------------YWGPYTGK 49
           W S   +HP+T  T+A D  + + L+ D                        Y  P TGK
Sbjct: 256 WGSINLDHPSTFETLAMDLKLKEDLIKDLDRFVRRRKFYKRVGKAWKRGYLLYGPPGTGK 315

Query: 50  SSLIAAMA--------DLDLKEFQSNS-----------RSILVIEDAVTSFE-----SNA 85
           +SLIAAMA        DL+L   Q NS           RSILVIED   S E     +  
Sbjct: 316 TSLIAAMANYLKFDVYDLELTSLQRNSQLRKLLVSTKNRSILVIEDIDCSTELQDRQAGR 375

Query: 86  YNS----VALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHT 141
           YN     + LS LL F+DGLWSS GD RI+V TT++KD IDP  LRP  MDMH H+S  T
Sbjct: 376 YNQPTTQLTLSGLLNFIDGLWSSCGDERIIVFTTNHKDRIDPALLRPGRMDMHIHMSYCT 435

Query: 142 ---FR-----------HYLFEKIEERLAKIQATPAEVPGELMK 170
              F+           H LF +IE  + +++ TPAE+  ELMK
Sbjct: 436 PYGFKTLASNYLGVSNHRLFTEIERLITEVEVTPAEIAEELMK 478

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547776|ref|XP_002514945.1| ATP binding protein, putative [Ricinus communis] gi|223545996|gb|EEF47499.1| ATP binding protein, putative [Ricinus communis]

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/223 (39%), Positives = 113/223 (50%), Gaps = 66/223 (29%)

Query: 14  WNSNKFEHPATSNTIATDFDMNKALVDD------------------------YWGPYTGK 49
           W S   +HP+T +TIA D  + + ++DD                        Y  P TGK
Sbjct: 209 WGSINLDHPSTFDTIAMDPRLKQEVMDDLDRFVIRREFYRRVGRPWKRGYLLYGPPGTGK 268

Query: 50  SSLIAAMA--------DLDLKEFQSNS-----------RSILVIEDAVTSF--------E 82
           SSLIAAMA        DL+L    SNS           RSILVIED   S         E
Sbjct: 269 SSLIAAMANYLKFNIYDLELTSISSNSELRRLLTSTGNRSILVIEDIDCSIKLQDRQNGE 328

Query: 83  SNAYNS-VALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHT 141
           +N  +S + LS LL F+DGLWSS GD +I+V TT+YKD +DP  LRP  MDMH H+S  T
Sbjct: 329 NNPGDSQLTLSGLLNFIDGLWSSCGDEKIIVFTTNYKDKLDPALLRPGRMDMHIHMSYCT 388

Query: 142 ---FR-----------HYLFEKIEERLAKIQATPAEVPGELMK 170
              F+           H LF +IE+ + +++ TPAEV  ELMK
Sbjct: 389 TSGFKILAFNYLKIKTHCLFTEIEKLIEEVEVTPAEVAEELMK 431

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30693380|ref|NP_190663.2| cytochrome BC1 synthesis-like protein [Arabidopsis thaliana] gi|109946623|gb|ABG48490.1| At3g50940 [Arabidopsis thaliana] gi|332645208|gb|AEE78729.1| cytochrome BC1 synthesis-like protein [Arabidopsis thaliana]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 112/225 (49%), Gaps = 68/225 (30%)

Query: 14  WNSNKFEHPATSNTIATDFDMNKALVDD------------------------YWGPYTGK 49
           W S   +HP+T  T+A D ++ K LV+D                        Y  P TGK
Sbjct: 201 WTSVTLDHPSTFRTLALDPEVKKNLVEDLDRFVQRKGFYGRVGKAWKRGYLLYGPPGTGK 260

Query: 50  SSLIAAMA--------DLDLKEFQSNS-----------RSILVIEDAVTSFESN------ 84
           SSLIAA+A        DLDL    +N+           RSILV+ED   S E        
Sbjct: 261 SSLIAAIANHLNFDIYDLDLTSLNNNAELRRLLMSTANRSILVVEDIDCSIELKDRSTDQ 320

Query: 85  -----AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSS 139
                 + +V LS LL FVDGLWSS G+ RI+V TT+Y++ +DP  LRP  MDMH H+S 
Sbjct: 321 ENNDPLHKTVTLSGLLNFVDGLWSSCGNERIIVFTTNYREKLDPALLRPGRMDMHIHMSY 380

Query: 140 HT---FR-----------HYLFEKIEERLAKIQATPAEVPGELMK 170
            T   F+           H LFE+IEE + +I+ TPAEV  +LM+
Sbjct: 381 CTPAAFKVLASNYLEIQDHILFEQIEEFIREIEVTPAEVAEQLMR 425

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
TAIR|locus:2175986	505	AT5G17760 [Arabidopsis thalian	0.552	0.186	0.427	4.1e-27
TAIR|locus:2078007	451	AT3G50940 [Arabidopsis thalian	0.605	0.228	0.453	5.1e-27
TAIR|locus:2077997	576	BCS1 "cytochrome BC1 synthesis	0.523	0.154	0.466	3.9e-25
TAIR|locus:2037186	475	AT1G43910 [Arabidopsis thalian	0.476	0.170	0.410	4.5e-25
TAIR|locus:1005716649	495	AT2G18193 [Arabidopsis thalian	0.617	0.212	0.409	3.9e-22
TAIR|locus:505006520	506	AT4G25835 [Arabidopsis thalian	0.329	0.110	0.517	8.9e-21
TAIR|locus:2175956	533	AT5G17740 [Arabidopsis thalian	0.335	0.106	0.456	1.4e-20
TAIR|locus:2174502	520	AT5G57480 [Arabidopsis thalian	0.329	0.107	0.482	4.1e-20
TAIR|locus:2175976	392	AT5G17750 [Arabidopsis thalian	0.335	0.145	0.508	6.9e-20
TAIR|locus:2128916	519	AT4G30250 [Arabidopsis thalian	0.3	0.098	0.470	7.9e-20

TAIR|locus:2175986 AT5G17760 [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 4.1e-27, Sum P(4) = 4.1e-27
 Identities = 47/110 (42%), Positives = 63/110 (57%)

Query:    52 LIAAMADLDLKEF--QSNSRSILVIED---AV---TSFES-----NAYNS---VALSALL 95
             L + M D DL+     + +RSILVIED   AV      E      N   S   + LS LL
Sbjct:   286 LASVMRDSDLRRLLLATRNRSILVIEDIDCAVDLPNRIEQPVEGKNRGESQGPLTLSGLL 345

Query:    96 KFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTFRHY 145
              F+DGLWSS GD RI++ TT++KD +DP  LRP  MDMH ++   +F+ +
Sbjct:   346 NFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDMHIYMGHCSFQGF 395

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2078007 AT3G50940 [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 5.1e-27, Sum P(3) = 5.1e-27
 Identities = 58/128 (45%), Positives = 77/128 (60%)

Query:    68 SRSILVIEDAVTSFE---------SN--AYNSVALSALLKFVDGLWSSSGDGRILVMTTD 116
             +RSILV+ED   S E         +N   + +V LS LL FVDGLWSS G+ RI+V TT+
Sbjct:   298 NRSILVVEDIDCSIELKDRSTDQENNDPLHKTVTLSGLLNFVDGLWSSCGNERIIVFTTN 357

Query:   117 YKDHIDPVPLRPSCMDMHFHLSSHT---FR-----------HYLFEKIEERLAKIQATPA 162
             Y++ +DP  LRP  MDMH H+S  T   F+           H LFE+IEE + +I+ TPA
Sbjct:   358 YREKLDPALLRPGRMDMHIHMSYCTPAAFKVLASNYLEIQDHILFEQIEEFIREIEVTPA 417

Query:   163 EVPGELMK 170
             EV  +LM+
Sbjct:   418 EVAEQLMR 425

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

TAIR|locus:2077997 BCS1 "cytochrome BC1 synthesis" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 3.9e-25, Sum P(3) = 3.9e-25
 Identities = 48/103 (46%), Positives = 60/103 (58%)

Query:    82 ESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLS--- 138
             E   Y  V LS LL F+DGLWSS GD RI++ TT+YK+ +D   LRP  MDMH H+S   
Sbjct:   381 EDPRYKKVTLSGLLNFIDGLWSSCGDERIIIFTTNYKEKLDAALLRPGRMDMHIHMSYCT 440

Query:   139 SHTFR-----------HYLFEKIEERLAKIQATPAEVPGELMK 170
               TF+           H LF KIEE +   + TPAEV  +LM+
Sbjct:   441 PSTFKALALNYLEIKEHRLFSKIEEGIEATEVTPAEVAEQLMR 483

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2037186 AT1G43910 [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 4.5e-25, Sum P(4) = 4.5e-25
 Identities = 39/95 (41%), Positives = 60/95 (63%)

Query:    89 VALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHT---FR-- 143
             ++LS LL FVDGLWSS G+ +I++ TT++K+ +DP  LRP  MD+H  + + T   F+  
Sbjct:   336 ISLSGLLNFVDGLWSSCGEEKIIIFTTNHKEKLDPALLRPGRMDVHILMDNCTPFVFKKL 395

Query:   144 ---------HYLFEKIEERLAKIQATPAEVPGELM 169
                      H LF+ IE+ + ++ +TPAEV  +LM
Sbjct:   396 VALYLKTDEHVLFDPIEKLILEVSSTPAEVTQQLM 430

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:1005716649 AT2G18193 [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.9e-22, Sum P(3) = 3.9e-22
 Identities = 54/132 (40%), Positives = 72/132 (54%)

Query:    66 SNSRSILVIEDAVTSFE---SNAYNS--------VALSALLKFVDGLWSSSGDGRILVMT 114
             + +RSILVIED   + E     A N         V LS +L F+DGLWSS GD RI+V T
Sbjct:   292 TTNRSILVIEDIDCNAEVRDREAENQEDEQIKGKVTLSGILNFIDGLWSSFGDERIIVFT 351

Query:   115 TDYKDHIDPVPLRPSCMDMHFHLSSHT---FR-------------HYLFEKIEERLAKIQ 158
             T++K+ +DP  LRP  MD+H ++S  T   FR             H L E+IE  +   +
Sbjct:   352 TNHKERLDPALLRPGRMDVHINMSYCTGLGFRTLVSNYLGLDGLNHPLCEEIEALVDSTE 411

Query:   159 ATPAEVPGELMK 170
              TPAE+  ELM+
Sbjct:   412 VTPAELAEELMQ 423

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:505006520 AT4G25835 [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 8.9e-21, Sum P(4) = 8.9e-21
 Identities = 29/56 (51%), Positives = 36/56 (64%)

Query:    87 NSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142
             N++ LS LL F DGLWS  G  RI V TT++ + +DP  LR   MDMH H+S  TF
Sbjct:   334 NTITLSGLLNFTDGLWSCCGSERIFVFTTNHIEKLDPALLRSGRMDMHIHMSYCTF 389

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

TAIR|locus:2175956 AT5G17740 [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 1.4e-20, Sum P(4) = 1.4e-20
 Identities = 26/57 (45%), Positives = 39/57 (68%)

Query:    89 VALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTFRHY 145
             + LS LL  +DGLWSS G+ RI++ TT+ K+ +DP  LRP  MDMH ++   +F+ +
Sbjct:   334 LTLSGLLNCIDGLWSSCGNERIIIFTTNNKEKLDPALLRPGRMDMHIYMGHCSFQGF 390

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

TAIR|locus:2174502 AT5G57480 [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 4.1e-20, Sum P(4) = 4.1e-20
 Identities = 27/56 (48%), Positives = 35/56 (62%)

Query:    87 NSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142
             N++ LS LL F DGLWS  G  RI V TT++ + +DP  LR   MDMH ++S   F
Sbjct:   343 NTITLSGLLNFTDGLWSCCGSERIFVFTTNHIEKLDPALLRSGRMDMHIYMSFCNF 398

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2175976 AT5G17750 [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 6.9e-20, Sum P(3) = 6.9e-20
 Identities = 29/57 (50%), Positives = 39/57 (68%)

Query:    89 VALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTFRHY 145
             + LS LL  +DGLWSS GD RI++ TT+ K+ +DP  LRP CMDMH +L   +F  +
Sbjct:   306 LTLSGLLNCIDGLWSSCGDERIVIFTTNNKEVLDPALLRPGCMDMHIYLGHCSFEGF 362

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

TAIR|locus:2128916 AT4G30250 [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 7.9e-20, Sum P(4) = 7.9e-20
 Identities = 24/51 (47%), Positives = 32/51 (62%)

Query:    87 NSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHL 137
             +SV LS LL F DGLWS  G  +I V TT++ + +D   +R   MDMH H+
Sbjct:   341 SSVTLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDSALMRSGRMDMHVHM 391

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00020302 hypothetical protein (446 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	170
pfam00004	131	pfam00004, AAA, ATPase family associated with vari	4e-06

>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA)

 Score = 43.7 bits (104), Expect = 4e-06
 Identities = 24/126 (19%), Positives = 46/126 (36%), Gaps = 34/126 (26%)

Query: 45  PYTGKSSLIAAMA-------------DLD--------------LKEFQSNSRSILVIE-- 75
           P TGK++L  A+A             +L                +  +  +  ++ I+  
Sbjct: 7   PGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCVIFIDEI 66

Query: 76  DAVT---SFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMD 132
           DA+        ++ +   ++ LL  +DG  +SS    I++  T+  D +DP  L     D
Sbjct: 67  DALAGSRGSGGDSESRRVVNQLLTELDGF-TSSLSKVIVIAATNRPDKLDP-ALLRGRFD 124

Query: 133 MHFHLS 138
                 
Sbjct: 125 RIIEFP 130

AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	170
KOG0743	457	consensus AAA+-type ATPase [Posttranslational modi	100.0
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	100.0
KOG0736	953	consensus Peroxisome assembly factor 2 containing	99.97
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	99.97
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	99.97
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	99.96
KOG0726	440	consensus 26S proteasome regulatory complex, ATPas	99.96
KOG0727	408	consensus 26S proteasome regulatory complex, ATPas	99.96
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	99.95
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	99.94
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	99.94
KOG0728	404	consensus 26S proteasome regulatory complex, ATPas	99.94
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	99.94
KOG0652	424	consensus 26S proteasome regulatory complex, ATPas	99.94
KOG0729	435	consensus 26S proteasome regulatory complex, ATPas	99.93
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	99.92
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	99.92
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	99.92
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.92
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	99.91
CHL00195	489	ycf46 Ycf46; Provisional	99.91
KOG0651	388	consensus 26S proteasome regulatory complex, ATPas	99.91
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	99.91
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	99.91
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	99.9
PRK03992	389	proteasome-activating nucleotidase; Provisional	99.89
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	99.89
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	99.89
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	99.89
CHL00176	638	ftsH cell division protein; Validated	99.88
CHL00206	2281	ycf2 Ycf2; Provisional	99.87
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	99.86
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	99.85
KOG0737	386	consensus AAA+-type ATPase [Posttranslational modi	99.85
KOG0732	1080	consensus AAA+-type ATPase containing the bromodom	99.84
KOG0740	428	consensus AAA+-type ATPase [Posttranslational modi	99.8
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.79
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	99.77
PF00004	132	AAA: ATPase family associated with various cellula	99.76
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	99.68
KOG0742	630	consensus AAA+-type ATPase [Posttranslational modi	99.63
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	99.6
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	99.52
CHL00181	287	cbbX CbbX; Provisional	99.48
COG2607	287	Predicted ATPase (AAA+ superfamily) [General funct	99.48
PHA02544	316	44 clamp loader, small subunit; Provisional	99.46
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	99.44
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	99.44
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	99.42
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	99.4
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	99.39
PLN03025	319	replication factor C subunit; Provisional	99.38
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	99.35
PRK04195	482	replication factor C large subunit; Provisional	99.34
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	99.33
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.32
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	99.28
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	99.27
PRK13342	413	recombination factor protein RarA; Reviewed	99.26
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	99.26
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	99.25
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.25
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	99.24
COG2256	436	MGS1 ATPase related to the helicase subunit of the	99.24
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	99.23
PF07726	131	AAA_3: ATPase family associated with various cellu	99.22
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	99.21
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	99.21
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.21
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	99.21
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	99.2
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	99.2
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	99.2
PRK12402	337	replication factor C small subunit 2; Reviewed	99.19
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	99.19
PRK10865	857	protein disaggregation chaperone; Provisional	99.19
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	99.19
COG0714	329	MoxR-like ATPases [General function prediction onl	99.18
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	99.17
PRK06893	229	DNA replication initiation factor; Validated	99.17
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	99.16
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	99.16
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	99.15
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	99.14
PRK00440	319	rfc replication factor C small subunit; Reviewed	99.13
PRK13407	334	bchI magnesium chelatase subunit I; Provisional	99.13
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	99.12
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	99.11
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	99.1
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	99.1
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	99.09
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	99.09
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	99.09
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	99.09
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	99.09
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	99.09
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	99.08
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	99.08
PRK07940	394	DNA polymerase III subunit delta'; Validated	99.07
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	99.06
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	99.06
PRK13341	725	recombination factor protein RarA/unknown domain f	99.06
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	99.04
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	99.04
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	99.03
CHL00095	821	clpC Clp protease ATP binding subunit	99.03
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	99.03
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	99.03
PRK08903	227	DnaA regulatory inactivator Hda; Validated	99.01
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	99.01
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	99.01
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	99.0
KOG2028	554	consensus ATPase related to the helicase subunit o	98.99
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	98.99
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	98.99
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	98.97
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	98.97
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	98.95
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	98.95
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	98.95
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	98.94
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	98.92
PRK08727	233	hypothetical protein; Validated	98.9
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	98.89
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	98.88
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	98.87
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	98.86
PRK08084	235	DNA replication initiation factor; Provisional	98.84
smart00350	509	MCM minichromosome maintenance proteins.	98.83
PRK00149	450	dnaA chromosomal replication initiation protein; R	98.82
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	98.81
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	98.81
PHA02244	383	ATPase-like protein	98.81
PRK09112	351	DNA polymerase III subunit delta'; Validated	98.8
smart00382	148	AAA ATPases associated with a variety of cellular	98.8
PRK07471	365	DNA polymerase III subunit delta'; Validated	98.79
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	98.79
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	98.78
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	98.75
TIGR02442	633	Cob-chelat-sub cobaltochelatase subunit. A number	98.74
PRK13531	498	regulatory ATPase RavA; Provisional	98.73
PRK12422	445	chromosomal replication initiation protein; Provis	98.72
PRK05564	313	DNA polymerase III subunit delta'; Validated	98.71
PRK14086	617	dnaA chromosomal replication initiation protein; P	98.7
PRK00411	394	cdc6 cell division control protein 6; Reviewed	98.7
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	98.67
PRK06620	214	hypothetical protein; Validated	98.66
CHL00095	821	clpC Clp protease ATP binding subunit	98.66
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	98.64
PRK09862	506	putative ATP-dependent protease; Provisional	98.64
COG1239	423	ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis	98.62
TIGR02031	589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	98.58
PRK14088	440	dnaA chromosomal replication initiation protein; P	98.57
KOG0736	953	consensus Peroxisome assembly factor 2 containing	98.56
PRK05642	234	DNA replication initiation factor; Validated	98.54
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	98.52
PRK10865	857	protein disaggregation chaperone; Provisional	98.51
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	98.51
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	98.5
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	98.5
PRK08058	329	DNA polymerase III subunit delta'; Validated	98.45
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	98.43
PRK12377	248	putative replication protein; Provisional	98.42
COG0606	490	Predicted ATPase with chaperone activity [Posttran	98.39
PRK07952	244	DNA replication protein DnaC; Validated	98.38
PRK09087	226	hypothetical protein; Validated	98.36
PTZ00112	1164	origin recognition complex 1 protein; Provisional	98.36
PRK08116	268	hypothetical protein; Validated	98.36
PRK05707	328	DNA polymerase III subunit delta'; Validated	98.34
PRK06526	254	transposase; Provisional	98.32
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	98.32
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	98.3
PRK08181	269	transposase; Validated	98.3
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	98.28
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	98.26
PRK06921	266	hypothetical protein; Provisional	98.23
PTZ00111	915	DNA replication licensing factor MCM4; Provisional	98.23
PRK07399	314	DNA polymerase III subunit delta'; Validated	98.21
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	98.2
KOG0990	360	consensus Replication factor C, subunit RFC5 [Repl	98.2
KOG1969	877	consensus DNA replication checkpoint protein CHL12	98.2
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	98.18
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	98.17
PRK13406	584	bchD magnesium chelatase subunit D; Provisional	98.16
PRK08939	306	primosomal protein DnaI; Reviewed	98.16
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	98.16
PRK14087	450	dnaA chromosomal replication initiation protein; P	98.16
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	98.14
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	98.13
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	98.13
PRK06964	342	DNA polymerase III subunit delta'; Validated	98.12
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	98.11
PRK06835	329	DNA replication protein DnaC; Validated	98.11
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	98.09
PRK09183	259	transposase/IS protein; Provisional	98.09
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	98.07
PF00493	331	MCM: MCM2/3/5 family This family extends the MCM d	98.05
PRK11608	326	pspF phage shock protein operon transcriptional ac	98.04
PRK11388	638	DNA-binding transcriptional regulator DhaR; Provis	98.02
KOG0478	804	consensus DNA replication licensing factor, MCM4 c	98.01
TIGR02974	329	phageshock_pspF psp operon transcriptional activat	98.0
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	97.98
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	97.98
PRK04132	846	replication factor C small subunit; Provisional	97.95
PRK13765	637	ATP-dependent protease Lon; Provisional	97.94
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.94
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.89
COG1484	254	DnaC DNA replication protein [DNA replication, rec	97.89
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	97.87
PRK06090	319	DNA polymerase III subunit delta'; Validated	97.86
PRK08769	319	DNA polymerase III subunit delta'; Validated	97.86
PF05707	193	Zot: Zonular occludens toxin (Zot); InterPro: IPR0	97.84
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	97.81
PRK06871	325	DNA polymerase III subunit delta'; Validated	97.8
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	97.78
COG3829	560	RocR Transcriptional regulator containing PAS, AAA	97.78
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.78
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	97.77
KOG0480	764	consensus DNA replication licensing factor, MCM6 c	97.74
PF03969	362	AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654	97.72
PRK08699	325	DNA polymerase III subunit delta'; Validated	97.72
COG1241	682	MCM2 Predicted ATPase involved in replication cont	97.71
PRK07993	334	DNA polymerase III subunit delta'; Validated	97.69
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.69
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	97.69
PRK11361	457	acetoacetate metabolism regulatory protein AtoC; P	97.61
KOG0745	564	consensus Putative ATP-dependent Clp-type protease	97.6
KOG1051	898	consensus Chaperone HSP104 and related ATP-depende	97.57
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	97.56
TIGR02329	526	propionate_PrpR propionate catabolism operon regul	97.55
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.55
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	97.52
PF05729	166	NACHT: NACHT domain	97.52
KOG2170	344	consensus ATPase of the AAA+ superfamily [General	97.47
KOG1514	767	consensus Origin recognition complex, subunit 1, a	97.47
PRK08118	167	topology modulation protein; Reviewed	97.44
TIGR02915	445	PEP_resp_reg putative PEP-CTERM system response re	97.41
PRK10923	469	glnG nitrogen regulation protein NR(I); Provisiona	97.41
PRK05022	509	anaerobic nitric oxide reductase transcription reg	97.4
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	97.38
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	97.38
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	97.36
PF13173	128	AAA_14: AAA domain	97.33
COG0593	408	DnaA ATPase involved in DNA replication initiation	97.31
PRK15115	444	response regulator GlrR; Provisional	97.31
PRK15424	538	propionate catabolism operon regulatory protein Pr	97.3
PRK07261	171	topology modulation protein; Provisional	97.3
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	97.28
KOG1942	456	consensus DNA helicase, TBP-interacting protein [R	97.26
TIGR01818	463	ntrC nitrogen regulation protein NR(I). This model	97.24
PF12774	231	AAA_6: Hydrolytic ATP binding site of dynein motor	97.22
COG2204	464	AtoC Response regulator containing CheY-like recei	97.21
PF05272	198	VirE: Virulence-associated protein E; InterPro: IP	97.21
KOG0482	721	consensus DNA replication licensing factor, MCM7 c	97.21
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	97.18
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	97.16
KOG0477	854	consensus DNA replication licensing factor, MCM2 c	97.13
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.13
COG1221	403	PspF Transcriptional regulators containing an AAA-	97.07
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	97.05
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.01
PRK10365	441	transcriptional regulatory protein ZraR; Provision	96.95
KOG2035	351	consensus Replication factor C, subunit RFC3 [Cell	96.94
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	96.88
COG3604	550	FhlA Transcriptional regulator containing GAF, AAA	96.88
PRK05917	290	DNA polymerase III subunit delta'; Validated	96.83
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	96.82
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	96.81
PRK07276	290	DNA polymerase III subunit delta'; Validated	96.81
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	96.8
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.79
PRK05818	261	DNA polymerase III subunit delta'; Validated	96.77
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	96.73
TIGR02237	209	recomb_radB DNA repair and recombination protein R	96.69
KOG0479	818	consensus DNA replication licensing factor, MCM3 c	96.68
PRK13695	174	putative NTPase; Provisional	96.63
COG1485	367	Predicted ATPase [General function prediction only	96.62
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	96.61
PRK06067	234	flagellar accessory protein FlaH; Validated	96.57
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	96.57
cd01128	249	rho_factor Transcription termination factor rho is	96.57
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	96.53
KOG1968	871	consensus Replication factor C, subunit RFC1 (larg	96.52
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	96.51
cd01394	218	radB RadB. The archaeal protein radB shares simila	96.51
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	96.5
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	96.48
PRK08533	230	flagellar accessory protein FlaH; Reviewed	96.48
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	96.47
KOG0481	729	consensus DNA replication licensing factor, MCM5 c	96.42
cd03216	163	ABC_Carb_Monos_I This family represents the domain	96.41
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	96.4
PHA02774	613	E1; Provisional	96.39
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	96.38
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	96.38
KOG2383	467	consensus Predicted ATPase [General function predi	96.37
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	96.36
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.35
PRK07132	299	DNA polymerase III subunit delta'; Validated	96.34
PHA00729	226	NTP-binding motif containing protein	96.33
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	96.3
PF02562	205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	96.29
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	96.23
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	96.17
KOG1805	1100	consensus DNA replication helicase [Replication, r	96.16
cd00983	325	recA RecA is a bacterial enzyme which has roles in	96.14
COG4619	223	ABC-type uncharacterized transport system, ATPase	96.12
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	96.11
PRK03839	180	putative kinase; Provisional	96.11
PRK06217	183	hypothetical protein; Validated	96.09
PRK15455	644	PrkA family serine protein kinase; Provisional	96.09
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.09
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	96.08
cd03246	173	ABCC_Protease_Secretion This family represents the	96.02
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	96.0
COG3854	308	SpoIIIAA ncharacterized protein conserved in bacte	96.0
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	96.0
PRK08233	182	hypothetical protein; Provisional	95.98
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	95.98
COG4178	604	ABC-type uncharacterized transport system, permeas	95.94
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	95.92
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	95.92
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	95.91
PRK06762	166	hypothetical protein; Provisional	95.9
PRK13947	171	shikimate kinase; Provisional	95.9
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	95.89
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	95.88
PRK00131	175	aroK shikimate kinase; Reviewed	95.88
PF13245	76	AAA_19: Part of AAA domain	95.87
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	95.86
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	95.85
PRK11823	446	DNA repair protein RadA; Provisional	95.85
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	95.84
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	95.83
COG5271	4600	MDN1 AAA ATPase containing von Willebrand factor t	95.83
PRK09376	416	rho transcription termination factor Rho; Provisio	95.81
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	95.81
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	95.8
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	95.8
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	95.77
PRK14532	188	adenylate kinase; Provisional	95.76
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	95.76
PRK09354	349	recA recombinase A; Provisional	95.76
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	95.76
PF14516	331	AAA_35: AAA-like domain	95.75
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	95.74
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	95.73
COG1855	604	ATPase (PilT family) [General function prediction	95.71
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	95.71
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	95.7
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	95.66
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	95.66
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	95.65
PRK00625	173	shikimate kinase; Provisional	95.65
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	95.65
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	95.64
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	95.63
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	95.62
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	95.62
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	95.62
PRK11545	163	gntK gluconate kinase 1; Provisional	95.59
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	95.56
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	95.55
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	95.52
PF13479	213	AAA_24: AAA domain	95.52
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	95.51
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	95.47
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	95.47
PRK12608	380	transcription termination factor Rho; Provisional	95.46
COG3283	511	TyrR Transcriptional regulator of aromatic amino a	95.45
PRK13889	988	conjugal transfer relaxase TraA; Provisional	95.44
PRK04040	188	adenylate kinase; Provisional	95.41
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	95.41
PRK06851	367	hypothetical protein; Provisional	95.39
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	95.38
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	95.38
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	95.37
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	95.37
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	95.35
TIGR02688	449	conserved hypothetical protein TIGR02688. Members	95.35
PHA00012	361	I assembly protein	95.33
PRK13949	169	shikimate kinase; Provisional	95.3
TIGR02768	744	TraA_Ti Ti-type conjugative transfer relaxase TraA	95.25
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	95.24
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	95.22
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	95.19
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	95.18
PRK00889	175	adenylylsulfate kinase; Provisional	95.16
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	95.15
PRK14530	215	adenylate kinase; Provisional	95.14
PRK05541	176	adenylylsulfate kinase; Provisional	95.14
PRK13826	1102	Dtr system oriT relaxase; Provisional	95.11
PRK04841	903	transcriptional regulator MalT; Provisional	95.1
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	95.09
PHA02530	300	pseT polynucleotide kinase; Provisional	95.09
PRK02496	184	adk adenylate kinase; Provisional	95.08
PRK09519	790	recA DNA recombination protein RecA; Reviewed	95.07
PRK13946	184	shikimate kinase; Provisional	95.05
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	95.04
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	95.04
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	95.03
PRK06547	172	hypothetical protein; Provisional	95.03
PRK14531	183	adenylate kinase; Provisional	95.03
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	95.02
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	95.01
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	95.01
PF08423	256	Rad51: Rad51; InterPro: IPR013632 This domain is f	94.97
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	94.94
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	94.94
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	94.91
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	94.91
PRK05480	209	uridine/cytidine kinase; Provisional	94.91
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	94.89
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	94.88
KOG2680	454	consensus DNA helicase TIP49, TBP-interacting prot	94.87
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	94.87
PRK04182	180	cytidylate kinase; Provisional	94.87
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	94.86
KOG2227	529	consensus Pre-initiation complex, subunit CDC6, AA	94.85
TIGR02533	486	type_II_gspE general secretory pathway protein E.	94.84
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	94.84
PRK03731	171	aroL shikimate kinase II; Reviewed	94.81
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	94.77
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	94.77
PRK06696	223	uridine kinase; Validated	94.76
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	94.76
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	94.72
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	94.7
PHA02624	647	large T antigen; Provisional	94.68
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	94.65
PRK12339	197	2-phosphoglycerate kinase; Provisional	94.62
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	94.59
PRK13975	196	thymidylate kinase; Provisional	94.57
TIGR00235	207	udk uridine kinase. Model contains a number of lon	94.52
PRK10536	262	hypothetical protein; Provisional	94.5
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	94.49
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	94.49
PRK13948	182	shikimate kinase; Provisional	94.48
PRK14527	191	adenylate kinase; Provisional	94.47
PLN02200	234	adenylate kinase family protein	94.47
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	94.44
COG4988	559	CydD ABC-type transport system involved in cytochr	94.44
COG2884	223	FtsE Predicted ATPase involved in cell division [C	94.44
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	94.4
PTZ00088	229	adenylate kinase 1; Provisional	94.39
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	94.38
PRK14528	186	adenylate kinase; Provisional	94.36
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	94.36
TIGR01613	304	primase_Cterm phage/plasmid primase, P4 family, C-	94.35
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	94.33
TIGR00376	637	DNA helicase, putative. The gene product may repre	94.33
cd00561	159	CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B	94.33
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	94.29
PRK08099	399	bifunctional DNA-binding transcriptional repressor	94.26
PTZ00301	210	uridine kinase; Provisional	94.25
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	94.24
PRK07667	193	uridine kinase; Provisional	94.23
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	94.21
PRK09302	509	circadian clock protein KaiC; Reviewed	94.15
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	94.14
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	94.12
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	94.11
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	94.11
PRK00279	215	adk adenylate kinase; Reviewed	94.1
PF02702	211	KdpD: Osmosensitive K+ channel His kinase sensor d	94.09
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	94.03
PRK14526	211	adenylate kinase; Provisional	94.0
PRK09825	176	idnK D-gluconate kinase; Provisional	93.99
COG1127	263	Ttg2A ABC-type transport system involved in resist	93.92
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	93.87
PRK03846	198	adenylylsulfate kinase; Provisional	93.86
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	93.85
PRK05057	172	aroK shikimate kinase I; Reviewed	93.85
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	93.84
PRK12338	319	hypothetical protein; Provisional	93.83
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	93.79
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	93.76
COG4525	259	TauB ABC-type taurine transport system, ATPase com	93.75
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	93.75
PRK13536	340	nodulation factor exporter subunit NodI; Provision	93.72
cd03115	173	SRP The signal recognition particle (SRP) mediates	93.68
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	93.64
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	93.62
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	93.62
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	93.56
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	93.54
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	93.54
PRK00300	205	gmk guanylate kinase; Provisional	93.52
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	93.51
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	93.49
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	93.47
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	93.45
PF01443	234	Viral_helicase1: Viral (Superfamily 1) RNA helicas	93.42
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	93.41
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	93.41
TIGR02538	564	type_IV_pilB type IV-A pilus assembly ATPase PilB.	93.37
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	93.37
PRK15453	290	phosphoribulokinase; Provisional	93.33
PF09848	352	DUF2075: Uncharacterized conserved protein (DUF207	93.3
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	93.29

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.7e-42  Score=298.82  Aligned_cols=169  Identities=49%  Similarity=0.770  Sum_probs=153.1

Q ss_pred             eeeecCCC------CCCCcccCCCCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHH
Q 036857            2 MLHMINNN------RPSYWNSNKFEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSS   51 (170)
Q Consensus         2 ~~~~~~~~------~~~~w~~~~~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~   51 (170)
                      +||++++.      .++.|+++++.||++|+++++++++|++|..++                       || ||||||+
T Consensus       171 kl~t~~~~~~~~~~~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS  250 (457)
T KOG0743|consen  171 KLYTNSGKTVIYTAKGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSS  250 (457)
T ss_pred             HHhhcCCCcccccccCCcceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHH
Confidence            57777752      578999999999999999999999999999999                       59 9999999


Q ss_pred             HHHHHH--------ccccccccccC-----------ceeEeeechhhhcc--CC----------ccchHHHHHHHHHhhc
Q 036857           52 LIAAMA--------DLDLKEFQSNS-----------RSILVIEDAVTSFE--SN----------AYNSVALSALLKFVDG  100 (170)
Q Consensus        52 la~aiA--------~~~l~~v~~~~-----------p~il~iDEiD~~~~--~~----------~~~~~~~~~ll~~lDg  100 (170)
                      ++.|+|        +++|..+..++           .+||+|+|||+-+.  .+          ..+..++|.|||++||
T Consensus       251 ~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDG  330 (457)
T KOG0743|consen  251 FIAAMANYLNYDIYDLELTEVKLDSDLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDG  330 (457)
T ss_pred             HHHHHHhhcCCceEEeeeccccCcHHHHHHHHhCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhcc
Confidence            999999        67788887776           89999999999986  11          1244789999999999


Q ss_pred             hhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc---------------chHHHHHHHHHhhcCCCCHHHHH
Q 036857          101 LWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF---------------RHYLFEKIEERLAKIQATPAEVP  165 (170)
Q Consensus       101 ~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~---------------~~~l~~~~~~~~~~~~~s~a~i~  165 (170)
                      +|++|++++++|+|||++|.|||||+||||+|+||+|+++++               .|.++++++.++.+..+|||+++
T Consensus       331 lwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~~tPA~V~  410 (457)
T KOG0743|consen  331 LWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETEVTPAQVA  410 (457)
T ss_pred             ccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCccCHHHHH
Confidence            999999999999999999999999999999999999999999               37899999999899999999999


Q ss_pred             HhhhC
Q 036857          166 GELMK  170 (170)
Q Consensus       166 ~~l~~  170 (170)
                      +.|++
T Consensus       411 e~lm~  415 (457)
T KOG0743|consen  411 EELMK  415 (457)
T ss_pred             HHHhh
Confidence            99975

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.7e-35  Score=248.75  Aligned_cols=150  Identities=20%  Similarity=0.212  Sum_probs=121.5

Q ss_pred             CCCCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---ccccccc-----
Q 036857           17 NKFEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDLKEF-----   64 (170)
Q Consensus        17 ~~~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l~~v-----   64 (170)
                      +.-.+..++++|.+.+++.+++.+.+                       || ||||||++|||+|   +..+-.+     
T Consensus       142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl  221 (406)
T COG1222         142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL  221 (406)
T ss_pred             eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence            34556668999999999999998877                       89 9999999999999   2222111     


Q ss_pred             -------------------cccCceeEeeechhhhccC--------CccchHHHHHHHHHhhchhccCCCCeEEEEeCCC
Q 036857           65 -------------------QSNSRSILVIEDAVTSFES--------NAYNSVALSALLKFVDGLWSSSGDGRILVMTTDY  117 (170)
Q Consensus        65 -------------------~~~~p~il~iDEiD~~~~~--------~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~  117 (170)
                                         ..++||||||||||+++..        ..+-++++-+||++|||+..  .+++-||||||+
T Consensus       222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~--~~nvKVI~ATNR  299 (406)
T COG1222         222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP--RGNVKVIMATNR  299 (406)
T ss_pred             HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC--CCCeEEEEecCC
Confidence                               2233999999999999982        23557899999999999987  589999999999


Q ss_pred             CCCCCCCCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhhcC-CCCHHHHHHhh
Q 036857          118 KDHIDPVPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAKI-QATPAEVPGEL  168 (170)
Q Consensus       118 ~~~lD~AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~~-~~s~a~i~~~l  168 (170)
                      ++.|||||+||||||++|+||+|+.  +.+++..            ++.++... .+|+|+|.+++
T Consensus       300 ~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaic  365 (406)
T COG1222         300 PDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAIC  365 (406)
T ss_pred             ccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHH
Confidence            9999999999999999999999999  5555542            44444433 69999998865

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=6e-32  Score=245.99  Aligned_cols=151  Identities=21%  Similarity=0.256  Sum_probs=123.2

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH-----------------
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA-----------------   57 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA-----------------   57 (170)
                      +..+...|++|++-+++|..+...+                      || ||||||.+|||+|                 
T Consensus       664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLN  743 (953)
T KOG0736|consen  664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLN  743 (953)
T ss_pred             CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHH
Confidence            4578889999999999999999888                      89 9999999999999                 


Q ss_pred             ------ccccccccccC----ceeEeeechhhhccCCc-------cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCC
Q 036857           58 ------DLDLKEFQSNS----RSILVIEDAVTSFESNA-------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDH  120 (170)
Q Consensus        58 ------~~~l~~v~~~~----p~il~iDEiD~~~~~~~-------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~  120 (170)
                            +-++.+|+..+    ||||||||+|+++++++       ...|.+|+||.+|||+......+++||+|||+|+.
T Consensus       744 MYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDL  823 (953)
T KOG0736|consen  744 MYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDL  823 (953)
T ss_pred             HHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccc
Confidence                  23444555544    99999999999999543       34689999999999998655789999999999999


Q ss_pred             CCCCCCCCCccceEEEcCCCCcchH---HHHH------------HHHHhhcC--CCCHHHHHHhh
Q 036857          121 IDPVPLRPSCMDMHFHLSSHTFRHY---LFEK------------IEERLAKI--QATPAEVPGEL  168 (170)
Q Consensus       121 lD~AllRpgR~d~~i~~~~p~~~~~---l~~~------------~~~~~~~~--~~s~a~i~~~l  168 (170)
                      |||||+||||||..++++.++..+.   ++++            +.+++.++  ++|+|++.+++
T Consensus       824 LDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLC  888 (953)
T KOG0736|consen  824 LDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLC  888 (953)
T ss_pred             cChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHH
Confidence            9999999999999999999988222   2222            33344433  48888887654

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1e-31  Score=241.39  Aligned_cols=149  Identities=21%  Similarity=0.261  Sum_probs=122.6

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---ccccccc------
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDLKEF------   64 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l~~v------   64 (170)
                      -..++.+|+++++.+++|+++...+                       || ||||||++|||+|   ..++-.|      
T Consensus       426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~  505 (693)
T KOG0730|consen  426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELF  505 (693)
T ss_pred             ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHH
Confidence            3457789999999999999998777                       79 9999999999999   3444333      


Q ss_pred             --------------cccC----ceeEeeechhhhccCC-----ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCC
Q 036857           65 --------------QSNS----RSILVIEDAVTSFESN-----AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHI  121 (170)
Q Consensus        65 --------------~~~~----p~il~iDEiD~~~~~~-----~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~l  121 (170)
                                    +..+    ||||||||||++...+     +.+.+++++||++|||+..  ..+|+||+|||+|+.|
T Consensus       506 sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~--~k~V~ViAATNRpd~I  583 (693)
T KOG0730|consen  506 SKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEA--LKNVLVIAATNRPDMI  583 (693)
T ss_pred             HHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccc--cCcEEEEeccCChhhc
Confidence                          2222    9999999999999855     3457899999999999987  4799999999999999


Q ss_pred             CCCCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhhc-CCCCHHHHHHhh
Q 036857          122 DPVPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAK-IQATPAEVPGEL  168 (170)
Q Consensus       122 D~AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~-~~~s~a~i~~~l  168 (170)
                      |+|++||||||..|++++||.  +.++++.            +.+++.. ..+|+|||.+++
T Consensus       584 D~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lC  645 (693)
T KOG0730|consen  584 DPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVC  645 (693)
T ss_pred             CHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHH
Confidence            999999999999999999999  5555543            4444443 359999998764

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=8.2e-31  Score=234.32  Aligned_cols=146  Identities=21%  Similarity=0.245  Sum_probs=117.2

Q ss_pred             CCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---cccccccccc------
Q 036857           21 HPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDLKEFQSN------   67 (170)
Q Consensus        21 ~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l~~v~~~------   67 (170)
                      +-.+|++|....++|.+|.-.+                       || ||||||++|||+|   ++++..|+.-      
T Consensus       506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkY  585 (802)
T KOG0733|consen  506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKY  585 (802)
T ss_pred             CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHH
Confidence            3457999999999998887666                       79 9999999999999   5555544431      


Q ss_pred             ------------------CceeEeeechhhhccCC-----ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCC
Q 036857           68 ------------------SRSILVIEDAVTSFESN-----AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPV  124 (170)
Q Consensus        68 ------------------~p~il~iDEiD~~~~~~-----~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~A  124 (170)
                                        +||||||||+|++++.+     +.+.+.+++||.+|||+..  ..+|+||+|||+|+.||||
T Consensus       586 VGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~--R~gV~viaATNRPDiIDpA  663 (802)
T KOG0733|consen  586 VGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEE--RRGVYVIAATNRPDIIDPA  663 (802)
T ss_pred             hhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccccc--ccceEEEeecCCCcccchh
Confidence                              29999999999999833     3557899999999999977  4799999999999999999


Q ss_pred             CCCCCccceEEEcCCCCc--chHHHHH--------------HHHHhh---cCCCCHHHHHHhh
Q 036857          125 PLRPSCMDMHFHLSSHTF--RHYLFEK--------------IEERLA---KIQATPAEVPGEL  168 (170)
Q Consensus       125 llRpgR~d~~i~~~~p~~--~~~l~~~--------------~~~~~~---~~~~s~a~i~~~l  168 (170)
                      ++||||||..+++++|+.  +..++..              +.+++.   -..+|+|++..+.
T Consensus       664 iLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLv  726 (802)
T KOG0733|consen  664 ILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALV  726 (802)
T ss_pred             hcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHH
Confidence            999999999999999999  3333332              233332   2368999987653

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=6.6e-30  Score=226.05  Aligned_cols=145  Identities=19%  Similarity=0.248  Sum_probs=115.4

Q ss_pred             CCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---cccccc------------
Q 036857           22 PATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---DLDLKE------------   63 (170)
Q Consensus        22 p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~~~l~~------------   63 (170)
                      +.+|++|-+.++.|++|.+.+                      -| ||||||+||||+|   ++++..            
T Consensus       300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VG  379 (752)
T KOG0734|consen  300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVG  379 (752)
T ss_pred             ccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhc
Confidence            456999999999999998877                      29 9999999999999   222211            


Q ss_pred             --------c----cccCceeEeeechhhhccCCc-----cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCC
Q 036857           64 --------F----QSNSRSILVIEDAVTSFESNA-----YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPL  126 (170)
Q Consensus        64 --------v----~~~~p~il~iDEiD~~~~~~~-----~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~All  126 (170)
                              +    +..+||||||||||++.+.+.     ..+.++++||.+|||+..  +++++||+|||+|+.||+||+
T Consensus       380 vGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~q--NeGiIvigATNfpe~LD~AL~  457 (752)
T KOG0734|consen  380 VGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQ--NEGIIVIGATNFPEALDKALT  457 (752)
T ss_pred             ccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCc--CCceEEEeccCChhhhhHHhc
Confidence                    1    112399999999999998332     456789999999999986  689999999999999999999


Q ss_pred             CCCccceEEEcCCCCc--chHHHHH------------HHHHhhcC-CCCHHHHHHhh
Q 036857          127 RPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAKI-QATPAEVPGEL  168 (170)
Q Consensus       127 RpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~~-~~s~a~i~~~l  168 (170)
                      ||||||++|.++.||.  +.+++..            ...+.+.. .|++||++++.
T Consensus       458 RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlV  514 (752)
T KOG0734|consen  458 RPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLV  514 (752)
T ss_pred             CCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHH
Confidence            9999999999999999  5555543            11122222 58888887653

>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.5e-29  Score=211.46  Aligned_cols=151  Identities=21%  Similarity=0.266  Sum_probs=120.0

Q ss_pred             cCCCCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---cc--------c
Q 036857           16 SNKFEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DL--------D   60 (170)
Q Consensus        16 ~~~~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~--------~   60 (170)
                      +++..+-.++.++.+.+.+-+++.+.+                       || ||||||.||+|+|   ..        +
T Consensus       175 K~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGse  254 (440)
T KOG0726|consen  175 KVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSE  254 (440)
T ss_pred             ecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHH
Confidence            456667778999999988888887777                       79 9999999999999   11        1


Q ss_pred             ---------------cccc-cccCceeEeeechhhhccC--------CccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857           61 ---------------LKEF-QSNSRSILVIEDAVTSFES--------NAYNSVALSALLKFVDGLWSSSGDGRILVMTTD  116 (170)
Q Consensus        61 ---------------l~~v-~~~~p~il~iDEiD~~~~~--------~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN  116 (170)
                                     +..+ ..++|+|+|+||||++...        ..+.++++-+|||++||+.+  ..++-||+|||
T Consensus       255 LiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds--rgDvKvimATn  332 (440)
T KOG0726|consen  255 LIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS--RGDVKVIMATN  332 (440)
T ss_pred             HHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccc--cCCeEEEEecc
Confidence                           1111 1234999999999999871        23557888899999999987  58999999999


Q ss_pred             CCCCCCCCCCCCCccceEEEcCCCCc--chHHH----------HH--HHHHh-hcCCCCHHHHHHhh
Q 036857          117 YKDHIDPVPLRPSCMDMHFHLSSHTF--RHYLF----------EK--IEERL-AKIQATPAEVPGEL  168 (170)
Q Consensus       117 ~~~~lD~AllRpgR~d~~i~~~~p~~--~~~l~----------~~--~~~~~-~~~~~s~a~i~~~l  168 (170)
                      +++.|||||+||||+|++|+|+.||.  ..++|          ++  ++.++ .+.++|+|+|.+++
T Consensus       333 rie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAic  399 (440)
T KOG0726|consen  333 RIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAIC  399 (440)
T ss_pred             cccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHH
Confidence            99999999999999999999999999  22232          11  44444 45679999998875

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=3.1e-29  Score=206.53  Aligned_cols=147  Identities=22%  Similarity=0.284  Sum_probs=115.1

Q ss_pred             CCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---cccc-----------
Q 036857           20 EHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDL-----------   61 (170)
Q Consensus        20 ~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l-----------   61 (170)
                      ++-.++.++.+.+-+|+++.+.+                       || |||||||+|+|+|   ...+           
T Consensus       149 kpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqk  228 (408)
T KOG0727|consen  149 KPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK  228 (408)
T ss_pred             CCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHH
Confidence            33447999999999999998877                       79 9999999999999   1111           


Q ss_pred             -------------ccccccCceeEeeechhhhccC--------CccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCC
Q 036857           62 -------------KEFQSNSRSILVIEDAVTSFES--------NAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDH  120 (170)
Q Consensus        62 -------------~~v~~~~p~il~iDEiD~~~~~--------~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~  120 (170)
                                   .-...++|+||||||+|+++..        ..+-++.+-+||++|||+..  ..++-||++||+.+.
T Consensus       229 ylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq--~~nvkvimatnradt  306 (408)
T KOG0727|consen  229 YLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQ--TTNVKVIMATNRADT  306 (408)
T ss_pred             HhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCc--ccceEEEEecCcccc
Confidence                         1123355999999999999871        23456788899999999987  579999999999999


Q ss_pred             CCCCCCCCCccceEEEcCCCCcchH--HHHH------------HHHHhh-cCCCCHHHHHHhh
Q 036857          121 IDPVPLRPSCMDMHFHLSSHTFRHY--LFEK------------IEERLA-KIQATPAEVPGEL  168 (170)
Q Consensus       121 lD~AllRpgR~d~~i~~~~p~~~~~--l~~~------------~~~~~~-~~~~s~a~i~~~l  168 (170)
                      ||||++||||+|++|+|++||.+++  .|..            ++..+. ...+|+|+|.+++
T Consensus       307 ldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aic  369 (408)
T KOG0727|consen  307 LDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAIC  369 (408)
T ss_pred             cCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHH
Confidence            9999999999999999999999332  2222            333332 3458888887654

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.3e-27  Score=213.81  Aligned_cols=133  Identities=22%  Similarity=0.250  Sum_probs=107.9

Q ss_pred             CCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---cccccc------------
Q 036857           22 PATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---DLDLKE------------   63 (170)
Q Consensus        22 p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~~~l~~------------   63 (170)
                      ..+|.++.+......+|...+                      || ||||||++|+|||   ++++..            
T Consensus       186 nv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSG  265 (802)
T KOG0733|consen  186 NVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSG  265 (802)
T ss_pred             CcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCc
Confidence            346999999888888777666                      69 9999999999999   232222            


Q ss_pred             --------ccc----cCceeEeeechhhhccCC-----ccchHHHHHHHHHhhchhccC--CCCeEEEEeCCCCCCCCCC
Q 036857           64 --------FQS----NSRSILVIEDAVTSFESN-----AYNSVALSALLKFVDGLWSSS--GDGRILVMTTDYKDHIDPV  124 (170)
Q Consensus        64 --------v~~----~~p~il~iDEiD~~~~~~-----~~~~~~~~~ll~~lDg~~~~~--~~~~~vi~tTN~~~~lD~A  124 (170)
                              ++.    ++|||+||||||++.+.+     +..++.+++||+.||++....  +..|+||+|||+|+.||||
T Consensus       266 ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpa  345 (802)
T KOG0733|consen  266 ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPA  345 (802)
T ss_pred             ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHH
Confidence                    222    229999999999999844     455788999999999996531  3679999999999999999


Q ss_pred             CCCCCccceEEEcCCCCc--chHHHHHHHHHh
Q 036857          125 PLRPSCMDMHFHLSSHTF--RHYLFEKIEERL  154 (170)
Q Consensus       125 llRpgR~d~~i~~~~p~~--~~~l~~~~~~~~  154 (170)
                      |.|+||||..|.++.|+.  +.+++..+++.+
T Consensus       346 LRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~l  377 (802)
T KOG0733|consen  346 LRRAGRFDREICLGVPSETAREEILRIICRGL  377 (802)
T ss_pred             HhccccccceeeecCCchHHHHHHHHHHHhhC
Confidence            999999999999999999  777777665544

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.1e-27  Score=217.15  Aligned_cols=153  Identities=22%  Similarity=0.266  Sum_probs=120.8

Q ss_pred             cccCCCCCCC--CcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---cc-----
Q 036857           14 WNSNKFEHPA--TSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DL-----   59 (170)
Q Consensus        14 w~~~~~~~p~--~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~-----   59 (170)
                      .+.+.+..+.  .|+++.+..++|+.+.+.+                       || ||||||.+|.|+|   .+     
T Consensus       653 LR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisv  732 (952)
T KOG0735|consen  653 LRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISV  732 (952)
T ss_pred             hhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEe
Confidence            3444444444  5899999999998887766                       79 9999999999999   22     


Q ss_pred             ---------------ccccccccC----ceeEeeechhhhccCCc-----cchHHHHHHHHHhhchhccCCCCeEEEEeC
Q 036857           60 ---------------DLKEFQSNS----RSILVIEDAVTSFESNA-----YNSVALSALLKFVDGLWSSSGDGRILVMTT  115 (170)
Q Consensus        60 ---------------~l~~v~~~~----p~il~iDEiD~~~~~~~-----~~~~~~~~ll~~lDg~~~~~~~~~~vi~tT  115 (170)
                                     ++..++..+    |||+||||+|++++.++     ...++++++|.+|||...  -.+|.|+++|
T Consensus       733 KGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Eg--l~GV~i~aaT  810 (952)
T KOG0735|consen  733 KGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEG--LDGVYILAAT  810 (952)
T ss_pred             cCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccc--cceEEEEEec
Confidence                           233333332    99999999999999443     457899999999999976  5799999999


Q ss_pred             CCCCCCCCCCCCCCccceEEEcCCCCc--chHHHHHHH------------HHhh-cCCCCHHHHHHhh
Q 036857          116 DYKDHIDPVPLRPSCMDMHFHLSSHTF--RHYLFEKIE------------ERLA-KIQATPAEVPGEL  168 (170)
Q Consensus       116 N~~~~lD~AllRpgR~d~~i~~~~p~~--~~~l~~~~~------------~~~~-~~~~s~a~i~~~l  168 (170)
                      .+|+.|||||+||||+|..++.+.|++  +.++++.+.            -+.. ...+|+|+++.+|
T Consensus       811 sRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll  878 (952)
T KOG0735|consen  811 SRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLL  878 (952)
T ss_pred             CCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHH
Confidence            999999999999999999999999999  444444322            2222 3369999999887

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=2.9e-27  Score=217.06  Aligned_cols=146  Identities=21%  Similarity=0.273  Sum_probs=116.5

Q ss_pred             CCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---ccccccccc--------
Q 036857           21 HPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---DLDLKEFQS--------   66 (170)
Q Consensus        21 ~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~~~l~~v~~--------   66 (170)
                      ...+|++|++.++.|++|.+.+                      .| ||||||+||||+|   .+++..+..        
T Consensus       306 t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~  385 (774)
T KOG0731|consen  306 TGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFV  385 (774)
T ss_pred             CCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhc
Confidence            3468999999999999999888                      39 9999999999999   333322221        


Q ss_pred             ----------------cCceeEeeechhhhccCC---------ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCC
Q 036857           67 ----------------NSRSILVIEDAVTSFESN---------AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHI  121 (170)
Q Consensus        67 ----------------~~p~il~iDEiD~~~~~~---------~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~l  121 (170)
                                      ++|||+|+||||.+...+         ++...+++++|.+|||...  ..+|+++++||+++.|
T Consensus       386 g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~--~~~vi~~a~tnr~d~l  463 (774)
T KOG0731|consen  386 GVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET--SKGVIVLAATNRPDIL  463 (774)
T ss_pred             ccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC--CCcEEEEeccCCcccc
Confidence                            239999999999998744         2335689999999999986  4789999999999999


Q ss_pred             CCCCCCCCccceEEEcCCCCc--chHHHHH-------------HHHHhh-cCCCCHHHHHHhh
Q 036857          122 DPVPLRPSCMDMHFHLSSHTF--RHYLFEK-------------IEERLA-KIQATPAEVPGEL  168 (170)
Q Consensus       122 D~AllRpgR~d~~i~~~~p~~--~~~l~~~-------------~~~~~~-~~~~s~a~i~~~l  168 (170)
                      |+|++||||||++|+++.|+.  +..+++.             +.++.. ...+++|+|+.++
T Consensus       464 d~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~  526 (774)
T KOG0731|consen  464 DPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLC  526 (774)
T ss_pred             CHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhh
Confidence            999999999999999999999  4444432             223222 3368999988754

>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=6.4e-28  Score=198.54  Aligned_cols=119  Identities=24%  Similarity=0.344  Sum_probs=96.0

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCccc-CCCcHHHHHHHHH---ccccccccc------------------------cCc
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDYWG-PYTGKSSLIAAMA---DLDLKEFQS------------------------NSR   69 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~~G-PGtGKT~la~aiA---~~~l~~v~~------------------------~~p   69 (170)
                      +..||..|+.+.+.+...- ++   || ||||||.+|||+|   ++-+..+..                        .+|
T Consensus       166 PvKHPELF~aLGIaQPKGv-lL---ygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmarehap  241 (404)
T KOG0728|consen  166 PVKHPELFEALGIAQPKGV-LL---YGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAP  241 (404)
T ss_pred             cccCHHHHHhcCCCCCcce-EE---ecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence            5677777777766554333 22   79 9999999999999   333322222                        229


Q ss_pred             eeEeeechhhhccC--------CccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCC
Q 036857           70 SILVIEDAVTSFES--------NAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHT  141 (170)
Q Consensus        70 ~il~iDEiD~~~~~--------~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~  141 (170)
                      +|||+||||++.+.        .++-++++-++||++||+..  .+++-||++||+++.+|||++||||+|++|+||.|+
T Consensus       242 siifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea--tknikvimatnridild~allrpgridrkiefp~p~  319 (404)
T KOG0728|consen  242 SIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA--TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPN  319 (404)
T ss_pred             ceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc--ccceEEEEeccccccccHhhcCCCcccccccCCCCC
Confidence            99999999999982        23457889999999999987  589999999999999999999999999999999999


Q ss_pred             c
Q 036857          142 F  142 (170)
Q Consensus       142 ~  142 (170)
                      .
T Consensus       320 e  320 (404)
T KOG0728|consen  320 E  320 (404)
T ss_pred             H
Confidence            9

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=3.3e-27  Score=202.71  Aligned_cols=145  Identities=19%  Similarity=0.200  Sum_probs=114.2

Q ss_pred             CCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---ccccccccc-----cC-
Q 036857           21 HPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---DLDLKEFQS-----NS-   68 (170)
Q Consensus        21 ~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~~~l~~v~~-----~~-   68 (170)
                      +...|++|.+..+.|+.|.+.+                      +| ||||||+||||+|   ..-+.+|.+     ++ 
T Consensus       207 p~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwR  286 (491)
T KOG0738|consen  207 PNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWR  286 (491)
T ss_pred             CCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhc
Confidence            4457999999999999888877                      39 9999999999999   222222222     11 


Q ss_pred             ------------------ceeEeeechhhhccC------CccchHHHHHHHHHhhchhccCCCC---eEEEEeCCCCCCC
Q 036857           69 ------------------RSILVIEDAVTSFES------NAYNSVALSALLKFVDGLWSSSGDG---RILVMTTDYKDHI  121 (170)
Q Consensus        69 ------------------p~il~iDEiD~~~~~------~~~~~~~~~~ll~~lDg~~~~~~~~---~~vi~tTN~~~~l  121 (170)
                                        |++|||||||++++.      ++.+++..++||.+|||+... .++   |+|+++||.|+.|
T Consensus       287 GeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t-~e~~k~VmVLAATN~PWdi  365 (491)
T KOG0738|consen  287 GESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGT-LENSKVVMVLAATNFPWDI  365 (491)
T ss_pred             cchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccc-cccceeEEEEeccCCCcch
Confidence                              999999999999983      456788999999999999875 445   8999999999999


Q ss_pred             CCCCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhhcC-CCCHHHHHHhh
Q 036857          122 DPVPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAKI-QATPAEVPGEL  168 (170)
Q Consensus       122 D~AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~~-~~s~a~i~~~l  168 (170)
                      |.||+|  ||+.+|++++|+.  +..+++.            +..+..+. .+|+++|..++
T Consensus       366 DEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvC  425 (491)
T KOG0738|consen  366 DEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVC  425 (491)
T ss_pred             HHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHH
Confidence            999999  9999999999999  4445442            23333333 58888887654

>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=5.7e-27  Score=193.88  Aligned_cols=148  Identities=20%  Similarity=0.222  Sum_probs=113.2

Q ss_pred             CCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH-----------cccccc
Q 036857           19 FEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA-----------DLDLKE   63 (170)
Q Consensus        19 ~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA-----------~~~l~~   63 (170)
                      -++-.++.++.+.+.+-++|++.+                       || ||||||++|||-|           +-.+..
T Consensus       164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ  243 (424)
T KOG0652|consen  164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ  243 (424)
T ss_pred             cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence            344456888888888888887766                       79 9999999999999           111111


Q ss_pred             ----------------ccccCceeEeeechhhhccC--------CccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC
Q 036857           64 ----------------FQSNSRSILVIEDAVTSFES--------NAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD  119 (170)
Q Consensus        64 ----------------v~~~~p~il~iDEiD~~~~~--------~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~  119 (170)
                                      .+.++|+||||||+|.+...        ..+-++++-+|||++||+.+  .+.+-||++||+.+
T Consensus       244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss--~~~vKviAATNRvD  321 (424)
T KOG0652|consen  244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSS--DDRVKVIAATNRVD  321 (424)
T ss_pred             hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCC--ccceEEEeeccccc
Confidence                            12233999999999999872        23457889999999999976  68899999999999


Q ss_pred             CCCCCCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhhcC-CCCHHHHHHhh
Q 036857          120 HIDPVPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAKI-QATPAEVPGEL  168 (170)
Q Consensus       120 ~lD~AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~~-~~s~a~i~~~l  168 (170)
                      .||||++|.||+|++|+||.|+.  +..+++.            ++++.+.. +|++|+..+.+
T Consensus       322 iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVc  385 (424)
T KOG0652|consen  322 ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVC  385 (424)
T ss_pred             ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeee
Confidence            99999999999999999999999  3333331            44444433 47777765543

>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.6e-25  Score=185.76  Aligned_cols=123  Identities=19%  Similarity=0.235  Sum_probs=99.1

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---cccccc-------
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDLKE-------   63 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l~~-------   63 (170)
                      +-.+-.++.++.+..++-+++.+.+                       || ||||||..|||+|   +.-+..       
T Consensus       169 eekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselv  248 (435)
T KOG0729|consen  169 EEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELV  248 (435)
T ss_pred             ecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHH
Confidence            3445557788888877777776655                       79 9999999999999   111111       


Q ss_pred             -----------------ccccCceeEeeechhhhcc--------CCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCC
Q 036857           64 -----------------FQSNSRSILVIEDAVTSFE--------SNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYK  118 (170)
Q Consensus        64 -----------------v~~~~p~il~iDEiD~~~~--------~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~  118 (170)
                                       ...+..|||||||||.+.+        ...+-++++-++++++||+..  ..++-|+++||+|
T Consensus       249 qkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdp--rgnikvlmatnrp  326 (435)
T KOG0729|consen  249 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDP--RGNIKVLMATNRP  326 (435)
T ss_pred             HHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCC--CCCeEEEeecCCC
Confidence                             1112299999999999987        223557889999999999987  4789999999999


Q ss_pred             CCCCCCCCCCCccceEEEcCCCCc
Q 036857          119 DHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       119 ~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      +.|||||+||||+|++++|++||-
T Consensus       327 dtldpallrpgrldrkvef~lpdl  350 (435)
T KOG0729|consen  327 DTLDPALLRPGRLDRKVEFGLPDL  350 (435)
T ss_pred             CCcCHhhcCCcccccceeccCCcc
Confidence            999999999999999999999998

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=2.1e-25  Score=201.28  Aligned_cols=147  Identities=22%  Similarity=0.288  Sum_probs=114.8

Q ss_pred             CCCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---ccccccccc-------
Q 036857           20 EHPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---DLDLKEFQS-------   66 (170)
Q Consensus        20 ~~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~~~l~~v~~-------   66 (170)
                      ....+|+++++.++.|+++.+.+                      .| ||||||++|||+|   ++++..+..       
T Consensus       144 ~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf  223 (596)
T COG0465         144 QVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF  223 (596)
T ss_pred             ccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence            34568999999999999998877                      39 9999999999999   333322222       


Q ss_pred             -----------------cCceeEeeechhhhccCCc--------cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCC
Q 036857           67 -----------------NSRSILVIEDAVTSFESNA--------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHI  121 (170)
Q Consensus        67 -----------------~~p~il~iDEiD~~~~~~~--------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~l  121 (170)
                                       ++|||+||||||++..+++        +...+++++|.+|||...  +++++++++||+++-+
T Consensus       224 VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~--~~gviviaaTNRpdVl  301 (596)
T COG0465         224 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG--NEGVIVIAATNRPDVL  301 (596)
T ss_pred             cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC--CCceEEEecCCCcccc
Confidence                             2299999999999987442        224589999999999975  5799999999999999


Q ss_pred             CCCCCCCCccceEEEcCCCCc--chHHHH------------HHHHHhhcC-CCCHHHHHHhh
Q 036857          122 DPVPLRPSCMDMHFHLSSHTF--RHYLFE------------KIEERLAKI-QATPAEVPGEL  168 (170)
Q Consensus       122 D~AllRpgR~d~~i~~~~p~~--~~~l~~------------~~~~~~~~~-~~s~a~i~~~l  168 (170)
                      ||||+||||||+.|.++.||.  ++.+..            .+..+.... .+++|++..++
T Consensus       302 D~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~  363 (596)
T COG0465         302 DPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLL  363 (596)
T ss_pred             hHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhH
Confidence            999999999999999999997  433333            133333333 47888777665

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=99.92  E-value=4.4e-25  Score=192.56  Aligned_cols=149  Identities=21%  Similarity=0.285  Sum_probs=113.7

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---ccccccc------
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDLKEF------   64 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l~~v------   64 (170)
                      .-.+..+|++|++.+.+|+++...+                       || ||||||++|+++|   ...+..+      
T Consensus       137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~  216 (398)
T PTZ00454        137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV  216 (398)
T ss_pred             cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence            3455668999999999999887765                       69 9999999999999   1111111      


Q ss_pred             ------------------cccCceeEeeechhhhccCC--------ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCC
Q 036857           65 ------------------QSNSRSILVIEDAVTSFESN--------AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYK  118 (170)
Q Consensus        65 ------------------~~~~p~il~iDEiD~~~~~~--------~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~  118 (170)
                                        ....|+||||||+|.++..+        ...++.+.++++.+|++..  ..++++|+|||++
T Consensus       217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~--~~~v~VI~aTN~~  294 (398)
T PTZ00454        217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ--TTNVKVIMATNRA  294 (398)
T ss_pred             HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC--CCCEEEEEecCCc
Confidence                              11239999999999998632        1234678889999999865  4689999999999


Q ss_pred             CCCCCCCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhh-cCCCCHHHHHHhh
Q 036857          119 DHIDPVPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLA-KIQATPAEVPGEL  168 (170)
Q Consensus       119 ~~lD~AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~-~~~~s~a~i~~~l  168 (170)
                      +.||||++||||||.+|+|++|+.  +..++..            +..++. ...+|+++|..++
T Consensus       295 d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~  359 (398)
T PTZ00454        295 DTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAIC  359 (398)
T ss_pred             hhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHH
Confidence            999999999999999999999999  4445443            222332 2368999988764

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=99.92  E-value=2.2e-25  Score=183.98  Aligned_cols=148  Identities=17%  Similarity=0.231  Sum_probs=113.1

Q ss_pred             CCCCCCcccccCChhhHHHh---hcCc----------------cc-CCCcHHHHHHHHH---ccccccccccC-------
Q 036857           19 FEHPATSNTIATDFDMNKAL---VDDY----------------WG-PYTGKSSLIAAMA---DLDLKEFQSNS-------   68 (170)
Q Consensus        19 ~~~p~~~~~v~~~~~~k~~l---~~~~----------------~G-PGtGKT~la~aiA---~~~l~~v~~~~-------   68 (170)
                      .....+|++|+++++.|++-   +..+                || ||||||++|||+|   ...+..++...       
T Consensus       114 ~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVG  193 (368)
T COG1223         114 IISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVG  193 (368)
T ss_pred             hhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhh
Confidence            34556899999999998763   3333                69 9999999999999   33433333321       


Q ss_pred             -----------------ceeEeeechhhhccCC------ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCC
Q 036857           69 -----------------RSILVIEDAVTSFESN------AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVP  125 (170)
Q Consensus        69 -----------------p~il~iDEiD~~~~~~------~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~Al  125 (170)
                                       |||+||||+|+++-++      +.-+..+++||..|||+.+  +.+++.|++||+++.||||+
T Consensus       194 dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~e--neGVvtIaaTN~p~~LD~ai  271 (368)
T COG1223         194 DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKE--NEGVVTIAATNRPELLDPAI  271 (368)
T ss_pred             hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCccc--CCceEEEeecCChhhcCHHH
Confidence                             9999999999998743      4456789999999999996  78999999999999999999


Q ss_pred             CCCCccceEEEcCCCCc--chHHHHH------------HHHHhh-cCCCCHHHHHHhhhC
Q 036857          126 LRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLA-KIQATPAEVPGELMK  170 (170)
Q Consensus       126 lRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~-~~~~s~a~i~~~l~~  170 (170)
                      ..  ||...|+|.+|+.  +.++++.            ++.+.. ...+|+.+|.+-.+|
T Consensus       272 Rs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK  329 (368)
T COG1223         272 RS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLK  329 (368)
T ss_pred             Hh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHH
Confidence            85  9999999999999  3333332            223333 235888888776553

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.92  E-value=9.9e-25  Score=202.51  Aligned_cols=146  Identities=20%  Similarity=0.268  Sum_probs=112.8

Q ss_pred             CCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---cccccccc--------
Q 036857           21 HPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDLKEFQ--------   65 (170)
Q Consensus        21 ~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l~~v~--------   65 (170)
                      +..+|+++++.+.+|++|...+                       || ||||||++|+++|   ..++..+.        
T Consensus       448 ~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~  527 (733)
T TIGR01243       448 PNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKW  527 (733)
T ss_pred             cccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcc
Confidence            3457999999999998876643                       69 9999999999999   22222211        


Q ss_pred             ----------------ccCceeEeeechhhhccCCc------cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCC
Q 036857           66 ----------------SNSRSILVIEDAVTSFESNA------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDP  123 (170)
Q Consensus        66 ----------------~~~p~il~iDEiD~~~~~~~------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~  123 (170)
                                      ...||||||||+|++++.++      ...+.+++||..|||+..  ..+++||+|||+++.||+
T Consensus       528 vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~--~~~v~vI~aTn~~~~ld~  605 (733)
T TIGR01243       528 VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQE--LSNVVVIAATNRPDILDP  605 (733)
T ss_pred             cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccC--CCCEEEEEeCCChhhCCH
Confidence                            11299999999999987432      235788999999999876  578999999999999999


Q ss_pred             CCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhhcC-CCCHHHHHHhh
Q 036857          124 VPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAKI-QATPAEVPGEL  168 (170)
Q Consensus       124 AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~~-~~s~a~i~~~l  168 (170)
                      |++||||||.+|++++|+.  +..++..            +..++... .+|+++|..++
T Consensus       606 allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~  665 (733)
T TIGR01243       606 ALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVC  665 (733)
T ss_pred             hhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHH
Confidence            9999999999999999999  4444421            33333333 58999987654

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=1.4e-24  Score=193.08  Aligned_cols=145  Identities=23%  Similarity=0.335  Sum_probs=111.7

Q ss_pred             CCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---ccccc-----ccccc--
Q 036857           22 PATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDLK-----EFQSN--   67 (170)
Q Consensus        22 p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l~-----~v~~~--   67 (170)
                      ..+|+++++....|+.+...+                       || ||||||++|+|+|   +..+.     .+.+.  
T Consensus       238 ~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~v  317 (494)
T COG0464         238 DVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWV  317 (494)
T ss_pred             CcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcccc
Confidence            447888888888888877666                       69 9999999999999   22221     22121  


Q ss_pred             -----------------CceeEeeechhhhccCCccc-----hHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCC
Q 036857           68 -----------------SRSILVIEDAVTSFESNAYN-----SVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVP  125 (170)
Q Consensus        68 -----------------~p~il~iDEiD~~~~~~~~~-----~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~Al  125 (170)
                                       +||||||||+|++++.++.+     .+.++++|.+|||+..  ..+|+||+|||+++.+|+|+
T Consensus       318 Gesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~--~~~v~vi~aTN~p~~ld~a~  395 (494)
T COG0464         318 GESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEK--AEGVLVIAATNRPDDLDPAL  395 (494)
T ss_pred             chHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCc--cCceEEEecCCCccccCHhh
Confidence                             19999999999999854432     4899999999999987  57899999999999999999


Q ss_pred             CCCCccceEEEcCCCCc--chHHHH--------------HHHHHhh-cCCCCHHHHHHhh
Q 036857          126 LRPSCMDMHFHLSSHTF--RHYLFE--------------KIEERLA-KIQATPAEVPGEL  168 (170)
Q Consensus       126 lRpgR~d~~i~~~~p~~--~~~l~~--------------~~~~~~~-~~~~s~a~i~~~l  168 (170)
                      +||||||.+|+++.||.  +..++.              .++.+.. ...+++++|..++
T Consensus       396 lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~  455 (494)
T COG0464         396 LRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALV  455 (494)
T ss_pred             cccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHH
Confidence            99999999999999999  222222              1222322 2348888887765

>CHL00195 ycf46 Ycf46; Provisional

Probab=99.91  E-value=1.9e-24  Score=192.72  Aligned_cols=143  Identities=21%  Similarity=0.218  Sum_probs=106.1

Q ss_pred             CCCcccccCChhhHHHhhcCc--------------------cc-CCCcHHHHHHHHH---cccc-----ccccc------
Q 036857           22 PATSNTIATDFDMNKALVDDY--------------------WG-PYTGKSSLIAAMA---DLDL-----KEFQS------   66 (170)
Q Consensus        22 p~~~~~v~~~~~~k~~l~~~~--------------------~G-PGtGKT~la~aiA---~~~l-----~~v~~------   66 (170)
                      ..+|++|++.+.+|+.+....                    || ||||||++|+++|   +..+     ..+..      
T Consensus       224 ~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGes  303 (489)
T CHL00195        224 NEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGES  303 (489)
T ss_pred             CCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChH
Confidence            447999999999997765411                    79 9999999999999   2222     22111      


Q ss_pred             -------------cCceeEeeechhhhccCC------ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCC
Q 036857           67 -------------NSRSILVIEDAVTSFESN------AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLR  127 (170)
Q Consensus        67 -------------~~p~il~iDEiD~~~~~~------~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllR  127 (170)
                                   .+||||||||+|.++...      +...+.++++++.|+..    ..+++||+|||+++.||+|++|
T Consensus       304 e~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~----~~~V~vIaTTN~~~~Ld~allR  379 (489)
T CHL00195        304 ESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK----KSPVFVVATANNIDLLPLEILR  379 (489)
T ss_pred             HHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC----CCceEEEEecCChhhCCHHHhC
Confidence                         129999999999998621      23345677777777753    4689999999999999999999


Q ss_pred             CCccceEEEcCCCCc--chHHHHH--------------HHHHhhc-CCCCHHHHHHhh
Q 036857          128 PSCMDMHFHLSSHTF--RHYLFEK--------------IEERLAK-IQATPAEVPGEL  168 (170)
Q Consensus       128 pgR~d~~i~~~~p~~--~~~l~~~--------------~~~~~~~-~~~s~a~i~~~l  168 (170)
                      |||||.+|+++.|+.  +..++..              +..++.. ..+|+|||...+
T Consensus       380 ~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv  437 (489)
T CHL00195        380 KGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSI  437 (489)
T ss_pred             CCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHH
Confidence            999999999999998  4444432              2223322 368999988754

>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=9.8e-25  Score=183.25  Aligned_cols=122  Identities=24%  Similarity=0.308  Sum_probs=100.1

Q ss_pred             CCCCC--CcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---ccccccccccC-
Q 036857           19 FEHPA--TSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDLKEFQSNS-   68 (170)
Q Consensus        19 ~~~p~--~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l~~v~~~~-   68 (170)
                      ...|+  +|+.+.+.-++-.++.+.+                       || ||||||++|+++|   +.++-.+...+ 
T Consensus       123 ~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~l  202 (388)
T KOG0651|consen  123 HEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSAL  202 (388)
T ss_pred             hcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhh
Confidence            34455  7888888777776666555                       89 9999999999999   44433322221 


Q ss_pred             -----------------------ceeEeeechhhhcc--------CCccchHHHHHHHHHhhchhccCCCCeEEEEeCCC
Q 036857           69 -----------------------RSILVIEDAVTSFE--------SNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDY  117 (170)
Q Consensus        69 -----------------------p~il~iDEiD~~~~--------~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~  117 (170)
                                             |||||+||||++.+        ++...++++-+|+++|||...  ...|-+|+|||+
T Consensus       203 v~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~--l~rVk~ImatNr  280 (388)
T KOG0651|consen  203 VDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDT--LHRVKTIMATNR  280 (388)
T ss_pred             hhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchh--cccccEEEecCC
Confidence                                   99999999999998        234557788889999999987  578999999999


Q ss_pred             CCCCCCCCCCCCccceEEEcCCCCc
Q 036857          118 KDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       118 ~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      ++.|||||+||||+|++++.|+|+.
T Consensus       281 pdtLdpaLlRpGRldrk~~iPlpne  305 (388)
T KOG0651|consen  281 PDTLDPALLRPGRLDRKVEIPLPNE  305 (388)
T ss_pred             ccccchhhcCCccccceeccCCcch
Confidence            9999999999999999999999998

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=99.91  E-value=3e-24  Score=191.51  Aligned_cols=147  Identities=22%  Similarity=0.292  Sum_probs=110.8

Q ss_pred             CCCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---ccccccc---------
Q 036857           20 EHPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---DLDLKEF---------   64 (170)
Q Consensus        20 ~~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~~~l~~v---------   64 (170)
                      .+..+|+++++.+++|+++...+                      || ||||||++|+++|   ...+..+         
T Consensus        49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~  128 (495)
T TIGR01241        49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF  128 (495)
T ss_pred             CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHH
Confidence            44568999999999998776433                      69 9999999999999   2222111         


Q ss_pred             ---------------cccCceeEeeechhhhccCCc--------cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCC
Q 036857           65 ---------------QSNSRSILVIEDAVTSFESNA--------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHI  121 (170)
Q Consensus        65 ---------------~~~~p~il~iDEiD~~~~~~~--------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~l  121 (170)
                                     ...+||||||||+|.++..+.        .....+++||+.||++..  ..+++||+|||+++.|
T Consensus       129 ~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~--~~~v~vI~aTn~~~~l  206 (495)
T TIGR01241       129 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT--NTGVIVIAATNRPDVL  206 (495)
T ss_pred             hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC--CCCeEEEEecCChhhc
Confidence                           112399999999999986332        234678899999999865  4689999999999999


Q ss_pred             CCCCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhhcC-CCCHHHHHHhh
Q 036857          122 DPVPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAKI-QATPAEVPGEL  168 (170)
Q Consensus       122 D~AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~~-~~s~a~i~~~l  168 (170)
                      |+|++||||||.+|++++|+.  +.+++..            +..+.... .+|+++|..++
T Consensus       207 d~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~  268 (495)
T TIGR01241       207 DPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLL  268 (495)
T ss_pred             CHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHH
Confidence            999999999999999999998  3333332            22222222 47888877654

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>TIGR03689 pup_AAA proteasome ATPase

Probab=99.91  E-value=1.9e-24  Score=193.23  Aligned_cols=122  Identities=22%  Similarity=0.316  Sum_probs=98.6

Q ss_pred             CCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH-ccc------------c
Q 036857           19 FEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA-DLD------------L   61 (170)
Q Consensus        19 ~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA-~~~------------l   61 (170)
                      ..++.+|+++++.+.+++++...+                       || ||||||++|+++| .+.            +
T Consensus       175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f  254 (512)
T TIGR03689       175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF  254 (512)
T ss_pred             cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence            345678999999999888877654                       69 9999999999999 221            1


Q ss_pred             cccc--------------------c--------cCceeEeeechhhhccCCc------cchHHHHHHHHHhhchhccCCC
Q 036857           62 KEFQ--------------------S--------NSRSILVIEDAVTSFESNA------YNSVALSALLKFVDGLWSSSGD  107 (170)
Q Consensus        62 ~~v~--------------------~--------~~p~il~iDEiD~~~~~~~------~~~~~~~~ll~~lDg~~~~~~~  107 (170)
                      ..+.                    .        ..||||||||+|+++..++      ...+.+++||+.|||+..  ..
T Consensus       255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~--~~  332 (512)
T TIGR03689       255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES--LD  332 (512)
T ss_pred             EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc--CC
Confidence            0110                    0        1289999999999987432      224567899999999975  46


Q ss_pred             CeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          108 GRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       108 ~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      +++||+|||+++.||||++||||||.+|+|++|+.
T Consensus       333 ~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~  367 (512)
T TIGR03689       333 NVIVIGASNREDMIDPAILRPGRLDVKIRIERPDA  367 (512)
T ss_pred             ceEEEeccCChhhCCHhhcCccccceEEEeCCCCH
Confidence            89999999999999999999999999999999999

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=99.90  E-value=7.2e-24  Score=186.77  Aligned_cols=150  Identities=21%  Similarity=0.243  Sum_probs=112.9

Q ss_pred             CCCCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---cccccccc----
Q 036857           17 NKFEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDLKEFQ----   65 (170)
Q Consensus        17 ~~~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l~~v~----   65 (170)
                      +...++.+|+++.+.+.+++++...+                       || ||||||++|+++|   ...+..+.    
T Consensus       174 ~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL  253 (438)
T PTZ00361        174 VDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSEL  253 (438)
T ss_pred             cccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchh
Confidence            45566679999999999988876654                       69 9999999999999   11111110    


Q ss_pred             --------------------ccCceeEeeechhhhccCCc--------cchHHHHHHHHHhhchhccCCCCeEEEEeCCC
Q 036857           66 --------------------SNSRSILVIEDAVTSFESNA--------YNSVALSALLKFVDGLWSSSGDGRILVMTTDY  117 (170)
Q Consensus        66 --------------------~~~p~il~iDEiD~~~~~~~--------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~  117 (170)
                                          ...||||||||+|.++..+.        ..++.+.++++.+|++..  ..++.||+|||+
T Consensus       254 ~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~--~~~V~VI~ATNr  331 (438)
T PTZ00361        254 IQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS--RGDVKVIMATNR  331 (438)
T ss_pred             hhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc--cCCeEEEEecCC
Confidence                                12299999999999986321        224567889999999865  468999999999


Q ss_pred             CCCCCCCCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhh-cCCCCHHHHHHhh
Q 036857          118 KDHIDPVPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLA-KIQATPAEVPGEL  168 (170)
Q Consensus       118 ~~~lD~AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~-~~~~s~a~i~~~l  168 (170)
                      ++.+|+|++||||||++|+|+.|+.  +..++..            +..++. ...+|+|+|..++
T Consensus       332 ~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~  397 (438)
T PTZ00361        332 IESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAIC  397 (438)
T ss_pred             hHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHH
Confidence            9999999999999999999999998  3344432            233332 3358888887764

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=99.89  E-value=2.7e-23  Score=180.70  Aligned_cols=147  Identities=21%  Similarity=0.233  Sum_probs=109.3

Q ss_pred             CCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---ccccccc--------
Q 036857           20 EHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDLKEF--------   64 (170)
Q Consensus        20 ~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l~~v--------   64 (170)
                      .+..+|+++++.+.+++++...+                       || ||||||++|+++|   ...+..+        
T Consensus       125 ~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~  204 (389)
T PRK03992        125 SPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK  204 (389)
T ss_pred             CCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh
Confidence            34557999999999998887644                       69 9999999999999   1111111        


Q ss_pred             ----------------cccCceeEeeechhhhccCCc--------cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCC
Q 036857           65 ----------------QSNSRSILVIEDAVTSFESNA--------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDH  120 (170)
Q Consensus        65 ----------------~~~~p~il~iDEiD~~~~~~~--------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~  120 (170)
                                      ....|+||||||+|.++..+.        ..++.+.++++.+|+...  ..+++||+|||+++.
T Consensus       205 ~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~--~~~v~VI~aTn~~~~  282 (389)
T PRK03992        205 FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP--RGNVKIIAATNRIDI  282 (389)
T ss_pred             hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC--CCCEEEEEecCChhh
Confidence                            012289999999999986321        234567788888998865  468999999999999


Q ss_pred             CCCCCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhh-cCCCCHHHHHHhh
Q 036857          121 IDPVPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLA-KIQATPAEVPGEL  168 (170)
Q Consensus       121 lD~AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~-~~~~s~a~i~~~l  168 (170)
                      +|+|++||||||.+|+++.|+.  +..++..            +..++. ...+++++|..++
T Consensus       283 ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~  345 (389)
T PRK03992        283 LDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAIC  345 (389)
T ss_pred             CCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHH
Confidence            9999999999999999999999  3333332            222222 2357888887764

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=4.9e-24  Score=188.80  Aligned_cols=144  Identities=18%  Similarity=0.272  Sum_probs=110.9

Q ss_pred             CCcccccCChhhHHHhhcC-c-----cc-CCCcHHHHHHHHH------------------------ccccccccccC---
Q 036857           23 ATSNTIATDFDMNKALVDD-Y-----WG-PYTGKSSLIAAMA------------------------DLDLKEFQSNS---   68 (170)
Q Consensus        23 ~~~~~v~~~~~~k~~l~~~-~-----~G-PGtGKT~la~aiA------------------------~~~l~~v~~~~---   68 (170)
                      +.|.+-+.+|++-+++--. +     || ||||||.+||.|.                        +-++..++.++   
T Consensus       236 RAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE  315 (744)
T KOG0741|consen  236 RAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEE  315 (744)
T ss_pred             HHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHH
Confidence            3477777888877776321 1     89 9999999999999                        22334444433   


Q ss_pred             ---------ceeEeeechhhhccCCc-------cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccc
Q 036857           69 ---------RSILVIEDAVTSFESNA-------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMD  132 (170)
Q Consensus        69 ---------p~il~iDEiD~~~~~~~-------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d  132 (170)
                               -.||+|||||++|.+++       ....++++||..|||+..  -++++||..||+.+.||.||+|||||+
T Consensus       316 ~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeq--LNNILVIGMTNR~DlIDEALLRPGRlE  393 (744)
T KOG0741|consen  316 QRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQ--LNNILVIGMTNRKDLIDEALLRPGRLE  393 (744)
T ss_pred             HHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHh--hhcEEEEeccCchhhHHHHhcCCCceE
Confidence                     67999999999998443       345789999999999987  589999999999999999999999999


Q ss_pred             eEEEcCCCCc--c-------------hHHHH---HHHHHhh-cCCCCHHHHHHhh
Q 036857          133 MHFHLSSHTF--R-------------HYLFE---KIEERLA-KIQATPAEVPGEL  168 (170)
Q Consensus       133 ~~i~~~~p~~--~-------------~~l~~---~~~~~~~-~~~~s~a~i~~~l  168 (170)
                      .++++++||+  +             +..+.   +++++.. ..++|+|||..+.
T Consensus       394 VqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglV  448 (744)
T KOG0741|consen  394 VQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLV  448 (744)
T ss_pred             EEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHH
Confidence            9999999999  1             11111   2555554 3479999998764

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=99.89  E-value=3.2e-23  Score=178.47  Aligned_cols=119  Identities=16%  Similarity=0.185  Sum_probs=84.2

Q ss_pred             cc-CCCcHHHHHHHHH-ccc----------------------cccccc---------cCceeEeeechhhhccCCcc---
Q 036857           43 WG-PYTGKSSLIAAMA-DLD----------------------LKEFQS---------NSRSILVIEDAVTSFESNAY---   86 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~----------------------l~~v~~---------~~p~il~iDEiD~~~~~~~~---   86 (170)
                      || ||||||++|+++| +++                      +..++.         .+||||||||||++++.++.   
T Consensus       154 ~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~  233 (413)
T PLN00020        154 WGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQY  233 (413)
T ss_pred             eCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCc
Confidence            89 9999999999999 111                      111111         12999999999999985432   


Q ss_pred             ---chHHHHHHHHHhhch--------h--ccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc--chHHHHHHH
Q 036857           87 ---NSVALSALLKFVDGL--------W--SSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF--RHYLFEKIE  151 (170)
Q Consensus        87 ---~~~~~~~ll~~lDg~--------~--~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~--~~~l~~~~~  151 (170)
                         .+....+|++.+|+.        +  ......++||+|||+++.|||||+||||||..+.  .|+.  +.++   ++
T Consensus       234 tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i~--lPd~e~R~eI---L~  308 (413)
T PLN00020        234 TVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV---VH  308 (413)
T ss_pred             chHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCceeC--CCCHHHHHHH---HH
Confidence               223347889998863        2  1124679999999999999999999999999764  6776  3333   33


Q ss_pred             HHhhcCCCCHHHHHH
Q 036857          152 ERLAKIQATPAEVPG  166 (170)
Q Consensus       152 ~~~~~~~~s~a~i~~  166 (170)
                      ..+.+.+++..++..
T Consensus       309 ~~~r~~~l~~~dv~~  323 (413)
T PLN00020        309 GIFRDDGVSREDVVK  323 (413)
T ss_pred             HHhccCCCCHHHHHH
Confidence            444455666665554

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=1.8e-23  Score=175.38  Aligned_cols=120  Identities=21%  Similarity=0.219  Sum_probs=100.8

Q ss_pred             CCCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH-cc--ccccccc-------
Q 036857           20 EHPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA-DL--DLKEFQS-------   66 (170)
Q Consensus        20 ~~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA-~~--~l~~v~~-------   66 (170)
                      .++..|++|++.++.|+.|.+.+                      || ||||||.||+|+| +.  .+.+|.+       
T Consensus       127 KPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKW  206 (439)
T KOG0739|consen  127 KPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW  206 (439)
T ss_pred             CCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHH
Confidence            45568999999999999998887                      69 9999999999999 22  2222211       


Q ss_pred             -----------------cCceeEeeechhhhccCC-----ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCC
Q 036857           67 -----------------NSRSILVIEDAVTSFESN-----AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPV  124 (170)
Q Consensus        67 -----------------~~p~il~iDEiD~~~~~~-----~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~A  124 (170)
                                       +.|+||||||||++++.+     +.+++...+||.+|.|+-.. .++++|+++||-|+.||.|
T Consensus       207 mGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d-~~gvLVLgATNiPw~LDsA  285 (439)
T KOG0739|consen  207 MGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGND-NDGVLVLGATNIPWVLDSA  285 (439)
T ss_pred             hccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccC-CCceEEEecCCCchhHHHH
Confidence                             119999999999999833     34567888999999999764 5689999999999999999


Q ss_pred             CCCCCccceEEEcCCCCc
Q 036857          125 PLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       125 llRpgR~d~~i~~~~p~~  142 (170)
                      ++|  ||+.+|++|+|+.
T Consensus       286 IRR--RFekRIYIPLPe~  301 (439)
T KOG0739|consen  286 IRR--RFEKRIYIPLPEA  301 (439)
T ss_pred             HHH--HhhcceeccCCcH
Confidence            999  9999999999998

>CHL00176 ftsH cell division protein; Validated

Probab=99.88  E-value=1.3e-22  Score=185.70  Aligned_cols=146  Identities=23%  Similarity=0.265  Sum_probs=110.5

Q ss_pred             CCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---ccccccc----------
Q 036857           21 HPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---DLDLKEF----------   64 (170)
Q Consensus        21 ~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~~~l~~v----------   64 (170)
                      ...+|+++++.++.|+++...+                      || ||||||++|+++|   +..+..+          
T Consensus       178 ~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~  257 (638)
T CHL00176        178 TGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFV  257 (638)
T ss_pred             CCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhh
Confidence            3468999999999998876654                      69 9999999999999   2211111          


Q ss_pred             --------------cccCceeEeeechhhhccCC--------ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCC
Q 036857           65 --------------QSNSRSILVIEDAVTSFESN--------AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHID  122 (170)
Q Consensus        65 --------------~~~~p~il~iDEiD~~~~~~--------~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD  122 (170)
                                    ...+||||||||+|.++..+        ......++++|+.||+...  ..+++||+|||+++.+|
T Consensus       258 g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~--~~~ViVIaaTN~~~~LD  335 (638)
T CHL00176        258 GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG--NKGVIVIAATNRVDILD  335 (638)
T ss_pred             hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC--CCCeeEEEecCchHhhh
Confidence                          11239999999999997532        2334678899999999865  56899999999999999


Q ss_pred             CCCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhhcC-CCCHHHHHHhh
Q 036857          123 PVPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAKI-QATPAEVPGEL  168 (170)
Q Consensus       123 ~AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~~-~~s~a~i~~~l  168 (170)
                      +|++||||||.+|+++.|+.  +..++..            +..+.... .+++++|..++
T Consensus       336 ~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lv  396 (638)
T CHL00176        336 AALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLL  396 (638)
T ss_pred             hhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHH
Confidence            99999999999999999998  3333322            22233332 47888887654

>CHL00206 ycf2 Ycf2; Provisional

Probab=99.87  E-value=1.5e-22  Score=197.87  Aligned_cols=99  Identities=11%  Similarity=0.130  Sum_probs=76.2

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhc-cCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc--chH
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWS-SSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF--RHY  145 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~-~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~--~~~  145 (170)
                      ||||||||||+++... ....++++|++.|||... ....+++||||||+|+.|||||+||||||++|+++.|+.  +.+
T Consensus      1733 PCIIFIDEIDaL~~~d-s~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~k 1811 (2281)
T CHL00206       1733 PCIIWIPNIHDLNVNE-SNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRK 1811 (2281)
T ss_pred             CeEEEEEchhhcCCCc-cceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHH
Confidence            9999999999998752 223458999999998742 124689999999999999999999999999999999987  333


Q ss_pred             HHHH---------------HHHHhhc-CCCCHHHHHHhh
Q 036857          146 LFEK---------------IEERLAK-IQATPAEVPGEL  168 (170)
Q Consensus       146 l~~~---------------~~~~~~~-~~~s~a~i~~~l  168 (170)
                      .+..               +..++.. .++|+||++.++
T Consensus      1812 iL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLv 1850 (2281)
T CHL00206       1812 HFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALT 1850 (2281)
T ss_pred             HHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHH
Confidence            2221               2333333 368999988764

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=99.86  E-value=1e-21  Score=180.27  Aligned_cols=145  Identities=19%  Similarity=0.237  Sum_probs=107.9

Q ss_pred             CCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---cccccccc----------
Q 036857           22 PATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---DLDLKEFQ----------   65 (170)
Q Consensus        22 p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~~~l~~v~----------   65 (170)
                      ...|+++.+....++++...+                      +| ||||||++|+++|   ...+..+.          
T Consensus       148 ~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g  227 (644)
T PRK10733        148 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVG  227 (644)
T ss_pred             hCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhc
Confidence            346888888877776654433                      69 9999999999999   22211111          


Q ss_pred             --------------ccCceeEeeechhhhccCCc--------cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCC
Q 036857           66 --------------SNSRSILVIEDAVTSFESNA--------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDP  123 (170)
Q Consensus        66 --------------~~~p~il~iDEiD~~~~~~~--------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~  123 (170)
                                    ...||||||||+|.++..++        .....++++|..|||...  ..++++|+|||+++.||+
T Consensus       228 ~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~--~~~vivIaaTN~p~~lD~  305 (644)
T PRK10733        228 VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRPDVLDP  305 (644)
T ss_pred             ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC--CCCeeEEEecCChhhcCH
Confidence                          11299999999999986332        234578999999999975  578999999999999999


Q ss_pred             CCCCCCccceEEEcCCCCc--chHHHHHH------------HHHhhc-CCCCHHHHHHhh
Q 036857          124 VPLRPSCMDMHFHLSSHTF--RHYLFEKI------------EERLAK-IQATPAEVPGEL  168 (170)
Q Consensus       124 AllRpgR~d~~i~~~~p~~--~~~l~~~~------------~~~~~~-~~~s~a~i~~~l  168 (170)
                      |++||||||++|++++|+.  +..++...            ..+... ..+|+|+|..++
T Consensus       306 Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~  365 (644)
T PRK10733        306 ALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLV  365 (644)
T ss_pred             HHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHH
Confidence            9999999999999999998  44444322            122222 358888888765

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=99.85  E-value=3e-21  Score=166.09  Aligned_cols=149  Identities=20%  Similarity=0.236  Sum_probs=108.9

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---ccccccc------
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDLKEF------   64 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l~~v------   64 (170)
                      ...+..+++++.+.+.+++++...+                       || ||||||++|+++|   ...+..+      
T Consensus       114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~  193 (364)
T TIGR01242       114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV  193 (364)
T ss_pred             ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence            3455668999999999998886644                       79 9999999999999   1111111      


Q ss_pred             ------------------cccCceeEeeechhhhccCC--------ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCC
Q 036857           65 ------------------QSNSRSILVIEDAVTSFESN--------AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYK  118 (170)
Q Consensus        65 ------------------~~~~p~il~iDEiD~~~~~~--------~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~  118 (170)
                                        ....|+||||||+|.++..+        ...++.+.++++.+|+...  ..++.+|+|||++
T Consensus       194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~--~~~v~vI~ttn~~  271 (364)
T TIGR01242       194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP--RGNVKVIAATNRP  271 (364)
T ss_pred             HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEecCCh
Confidence                              11128999999999997632        1234567788888998754  4689999999999


Q ss_pred             CCCCCCCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhhc-CCCCHHHHHHhh
Q 036857          119 DHIDPVPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAK-IQATPAEVPGEL  168 (170)
Q Consensus       119 ~~lD~AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~-~~~s~a~i~~~l  168 (170)
                      +.+|+|++||||||..|+++.|+.  +..++..            +..+... ..+++++|..++
T Consensus       272 ~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~  336 (364)
T TIGR01242       272 DILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAIC  336 (364)
T ss_pred             hhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHH
Confidence            999999999999999999999998  3333332            2222222 247777777654

Many proteins may score above the trusted cutoff because an internal

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=2e-21  Score=166.02  Aligned_cols=144  Identities=18%  Similarity=0.262  Sum_probs=111.8

Q ss_pred             CCcccccCChhhHHHhhcCc------------------------cc-CCCcHHHHHHHHH--------ccccccccccC-
Q 036857           23 ATSNTIATDFDMNKALVDDY------------------------WG-PYTGKSSLIAAMA--------DLDLKEFQSNS-   68 (170)
Q Consensus        23 ~~~~~v~~~~~~k~~l~~~~------------------------~G-PGtGKT~la~aiA--------~~~l~~v~~~~-   68 (170)
                      .+|+++.+.+.+++++.+.+                        || ||||||++|+|+|        .+.++.+.+++ 
T Consensus        89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWf  168 (386)
T KOG0737|consen   89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWF  168 (386)
T ss_pred             eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhH
Confidence            46999999999999888777                        69 9999999999999        33444433332 


Q ss_pred             ------------------ceeEeeechhhhccCCc-----cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCC
Q 036857           69 ------------------RSILVIEDAVTSFESNA-----YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVP  125 (170)
Q Consensus        69 ------------------p~il~iDEiD~~~~~~~-----~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~Al  125 (170)
                                        ||||||||+|+++..++     .....-++|...=||+.+.....++|++|||+|..+|.|+
T Consensus       169 gE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAi  248 (386)
T KOG0737|consen  169 GEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAI  248 (386)
T ss_pred             HHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHH
Confidence                              99999999999998443     2234566677778999886445699999999999999999


Q ss_pred             CCCCccceEEEcCCCCc--chHHHHH------------HHHHhhcC-CCCHHHHHHhh
Q 036857          126 LRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAKI-QATPAEVPGEL  168 (170)
Q Consensus       126 lRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~~-~~s~a~i~~~l  168 (170)
                      +|  |+-..++++.|+.  +.+++..            +.++.... .+|+.+|.+++
T Consensus       249 iR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC  304 (386)
T KOG0737|consen  249 IR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELC  304 (386)
T ss_pred             HH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHH
Confidence            99  9999999999999  4444432            44444434 58888887654

>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=2.6e-21  Score=182.23  Aligned_cols=127  Identities=21%  Similarity=0.266  Sum_probs=102.7

Q ss_pred             cccCCCCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH--------cccc
Q 036857           14 WNSNKFEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA--------DLDL   61 (170)
Q Consensus        14 w~~~~~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA--------~~~l   61 (170)
                      -.+.+......|++|++..+...++.+.+                       +| ||||||++|||+|        .+.+
T Consensus       253 ~dp~~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisf  332 (1080)
T KOG0732|consen  253 SDPLSVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISF  332 (1080)
T ss_pred             cCchhhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccch
Confidence            34556667778999998888888877666                       49 9999999999999        1111


Q ss_pred             ---------c-cc--------------cccCceeEeeechhhhccCC-----ccchHHHHHHHHHhhchhccCCCCeEEE
Q 036857           62 ---------K-EF--------------QSNSRSILVIEDAVTSFESN-----AYNSVALSALLKFVDGLWSSSGDGRILV  112 (170)
Q Consensus        62 ---------~-~v--------------~~~~p~il~iDEiD~~~~~~-----~~~~~~~~~ll~~lDg~~~~~~~~~~vi  112 (170)
                               + +|              +...|+|+|+||||-+++-+     ......++.||..|||+.+  ...|+||
T Consensus       333 fmrkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGlds--RgqVvvi  410 (1080)
T KOG0732|consen  333 FMRKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDS--RGQVVVI  410 (1080)
T ss_pred             hhhcCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCC--CCceEEE
Confidence                     1 11              11119999999999988833     2334678999999999987  4799999


Q ss_pred             EeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          113 MTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       113 ~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      +|||+++.+|||++||||||+.++|++|+.
T Consensus       411 gATnRpda~dpaLRRPgrfdref~f~lp~~  440 (1080)
T KOG0732|consen  411 GATNRPDAIDPALRRPGRFDREFYFPLPDV  440 (1080)
T ss_pred             cccCCccccchhhcCCcccceeEeeeCCch
Confidence            999999999999999999999999999988

>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=1.3e-19  Score=158.33  Aligned_cols=120  Identities=19%  Similarity=0.235  Sum_probs=99.9

Q ss_pred             CCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---c-----cccccccccC-
Q 036857           21 HPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---D-----LDLKEFQSNS-   68 (170)
Q Consensus        21 ~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~-----~~l~~v~~~~-   68 (170)
                      .+..|+++.+....|+.+.+.+                      || ||||||++++|||   .     +.-+++..++ 
T Consensus       148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~  227 (428)
T KOG0740|consen  148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYV  227 (428)
T ss_pred             CcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhcc
Confidence            3467888888888888877766                      69 9999999999999   1     1111122211 


Q ss_pred             ------------------ceeEeeechhhhccC-----CccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCC
Q 036857           69 ------------------RSILVIEDAVTSFES-----NAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVP  125 (170)
Q Consensus        69 ------------------p~il~iDEiD~~~~~-----~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~Al  125 (170)
                                        |+|+|+||+|+++..     +..+.+...++|.+.|+......+.++||+|||+|+.+|.|+
T Consensus       228 Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~  307 (428)
T KOG0740|consen  228 GESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAA  307 (428)
T ss_pred             ChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHH
Confidence                              999999999999983     345568899999999999988777899999999999999999


Q ss_pred             CCCCccceEEEcCCCCc
Q 036857          126 LRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       126 lRpgR~d~~i~~~~p~~  142 (170)
                      +|  ||-..+++++|+.
T Consensus       308 ~R--rf~kr~yiplPd~  322 (428)
T KOG0740|consen  308 RR--RFVKRLYIPLPDY  322 (428)
T ss_pred             HH--HhhceeeecCCCH
Confidence            99  9999999999999

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.79  E-value=2.6e-19  Score=166.43  Aligned_cols=120  Identities=23%  Similarity=0.278  Sum_probs=96.9

Q ss_pred             CCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---ccccccc---------
Q 036857           21 HPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDLKEF---------   64 (170)
Q Consensus        21 ~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l~~v---------   64 (170)
                      +..+|+++++...+++++.+.+                       || ||||||++|+++|   ...+..+         
T Consensus       173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~  252 (733)
T TIGR01243       173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY  252 (733)
T ss_pred             CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence            4468999999999988876543                       69 9999999999999   1111111         


Q ss_pred             -----------c----ccCceeEeeechhhhccCCc-----cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCC
Q 036857           65 -----------Q----SNSRSILVIEDAVTSFESNA-----YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPV  124 (170)
Q Consensus        65 -----------~----~~~p~il~iDEiD~~~~~~~-----~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~A  124 (170)
                                 +    .+.|+||||||+|.++..++     ...+.+++|++.||++..  ...+++|+|||+++.+|+|
T Consensus       253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~--~~~vivI~atn~~~~ld~a  330 (733)
T TIGR01243       253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKG--RGRVIVIGATNRPDALDPA  330 (733)
T ss_pred             ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcccc--CCCEEEEeecCChhhcCHH
Confidence                       1    11289999999999987432     235678899999999965  4678999999999999999


Q ss_pred             CCCCCccceEEEcCCCCc
Q 036857          125 PLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       125 llRpgR~d~~i~~~~p~~  142 (170)
                      +.|+||||..++++.|+.
T Consensus       331 l~r~gRfd~~i~i~~P~~  348 (733)
T TIGR01243       331 LRRPGRFDREIVIRVPDK  348 (733)
T ss_pred             HhCchhccEEEEeCCcCH
Confidence            999999999999999998

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=6.7e-19  Score=159.11  Aligned_cols=97  Identities=27%  Similarity=0.376  Sum_probs=81.2

Q ss_pred             cc-CCCcHHHHHHHHH---c-----cc---------------ccccc----ccC-ceeEeeechhhhccCCc----cchH
Q 036857           43 WG-PYTGKSSLIAAMA---D-----LD---------------LKEFQ----SNS-RSILVIEDAVTSFESNA----YNSV   89 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA---~-----~~---------------l~~v~----~~~-p~il~iDEiD~~~~~~~----~~~~   89 (170)
                      || ||||||++++++|   .     ++               +..++    ..+ |+++|+||+|++++.+.    ..++
T Consensus       224 ~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~R  303 (693)
T KOG0730|consen  224 YGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESR  303 (693)
T ss_pred             cCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHH
Confidence            79 9999999999999   1     11               11111    122 99999999999998332    3678


Q ss_pred             HHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857           90 ALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus        90 ~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      ..++++..|||+..  ..+++|++|||+++.||+|+.| ||||..++++.|+.
T Consensus       304 v~sqlltL~dg~~~--~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~  353 (693)
T KOG0730|consen  304 VVSQLLTLLDGLKP--DAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGS  353 (693)
T ss_pred             HHHHHHHHHhhCcC--cCcEEEEEecCCccccChhhhc-CCCcceeeecCCCc
Confidence            99999999999975  4799999999999999999999 99999999999997

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=99.76  E-value=7.5e-19  Score=128.23  Aligned_cols=95  Identities=31%  Similarity=0.466  Sum_probs=74.9

Q ss_pred             cc-CCCcHHHHHHHHH--------cccccccc-------------------ccC-ceeEeeechhhhccCC-----ccch
Q 036857           43 WG-PYTGKSSLIAAMA--------DLDLKEFQ-------------------SNS-RSILVIEDAVTSFESN-----AYNS   88 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA--------~~~l~~v~-------------------~~~-p~il~iDEiD~~~~~~-----~~~~   88 (170)
                      +| ||||||++|+++|        .++...+.                   ... |+||||||+|.++...     ....
T Consensus         4 ~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~~~~   83 (132)
T PF00004_consen    4 HGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSSFEQ   83 (132)
T ss_dssp             ESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSHHHH
T ss_pred             ECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccccccccccc
Confidence            69 9999999999999        11111111                   122 7999999999999743     2345


Q ss_pred             HHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCC
Q 036857           89 VALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSS  139 (170)
Q Consensus        89 ~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~  139 (170)
                      ..++.+++.++..... +.++++|+|||.++.+|++++| +||+.+|++++
T Consensus        84 ~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~  132 (132)
T PF00004_consen   84 RLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL  132 (132)
T ss_dssp             HHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred             cccceeeecccccccc-cccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence            6788899999998753 3579999999999999999999 99999999874

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=2.1e-17  Score=139.98  Aligned_cols=115  Identities=22%  Similarity=0.269  Sum_probs=95.7

Q ss_pred             CcccccCChhhHHHhhcCc------------------------cc-CCCcHHHHHHHHH-----------------cccc
Q 036857           24 TSNTIATDFDMNKALVDDY------------------------WG-PYTGKSSLIAAMA-----------------DLDL   61 (170)
Q Consensus        24 ~~~~v~~~~~~k~~l~~~~------------------------~G-PGtGKT~la~aiA-----------------~~~l   61 (170)
                      .|++++-.-++|+++...+                        +| ||||||+++||+|                 +++-
T Consensus       140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins  219 (423)
T KOG0744|consen  140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS  219 (423)
T ss_pred             hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence            4888999999999998876                        49 9999999999999                 2333


Q ss_pred             ccccccC------------------------ceeEeeechhhhcc---------CCccchHHHHHHHHHhhchhccCCCC
Q 036857           62 KEFQSNS------------------------RSILVIEDAVTSFE---------SNAYNSVALSALLKFVDGLWSSSGDG  108 (170)
Q Consensus        62 ~~v~~~~------------------------p~il~iDEiD~~~~---------~~~~~~~~~~~ll~~lDg~~~~~~~~  108 (170)
                      ..+++++                        -..++|||+++++.         +.+..-|+++++|.+||.+...  .+
T Consensus       220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~--~N  297 (423)
T KOG0744|consen  220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRY--PN  297 (423)
T ss_pred             hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccC--CC
Confidence            3333332                        34677899999987         2234568999999999999873  79


Q ss_pred             eEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          109 RILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       109 ~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      +++++|+|-.+.||.|+.  +|-|.+.++++|+.
T Consensus       298 vliL~TSNl~~siD~AfV--DRADi~~yVG~Pt~  329 (423)
T KOG0744|consen  298 VLILATSNLTDSIDVAFV--DRADIVFYVGPPTA  329 (423)
T ss_pred             EEEEeccchHHHHHHHhh--hHhhheeecCCccH
Confidence            999999999999999999  59999999999999

>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=5.6e-16  Score=134.88  Aligned_cols=117  Identities=21%  Similarity=0.238  Sum_probs=87.3

Q ss_pred             CCCCCcccccCChhhHHHhhcCc------------------cc-CCCcHHHHHHHHH---ccccccccccC---------
Q 036857           20 EHPATSNTIATDFDMNKALVDDY------------------WG-PYTGKSSLIAAMA---DLDLKEFQSNS---------   68 (170)
Q Consensus        20 ~~p~~~~~v~~~~~~k~~l~~~~------------------~G-PGtGKT~la~aiA---~~~l~~v~~~~---------   68 (170)
                      ....+|+.|+++|.++.+|....                  || ||||||++||-||   +++...+....         
T Consensus       349 ~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaV  428 (630)
T KOG0742|consen  349 RGKDPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAV  428 (630)
T ss_pred             cCCCCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHH
Confidence            34456999999999999887655                  79 9999999999999   44433322211         


Q ss_pred             ---------------ceeEeeechhhhccCCc--c----chHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCC
Q 036857           69 ---------------RSILVIEDAVTSFESNA--Y----NSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLR  127 (170)
Q Consensus        69 ---------------p~il~iDEiD~~~~~~~--~----~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllR  127 (170)
                                     .-+|||||.|.++-.+.  .    .+..++.||=- -|-.   ..+++++.+||+|+++|.|+- 
T Consensus       429 TkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfR-TGdq---SrdivLvlAtNrpgdlDsAV~-  503 (630)
T KOG0742|consen  429 TKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR-TGDQ---SRDIVLVLATNRPGDLDSAVN-  503 (630)
T ss_pred             HHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHH-hccc---ccceEEEeccCCccchhHHHH-
Confidence                           77999999999987332  2    22333333311 1222   357899999999999999998 


Q ss_pred             CCccceEEEcCCCCc
Q 036857          128 PSCMDMHFHLSSHTF  142 (170)
Q Consensus       128 pgR~d~~i~~~~p~~  142 (170)
                       +|||..|+|++|..
T Consensus       504 -DRide~veFpLPGe  517 (630)
T KOG0742|consen  504 -DRIDEVVEFPLPGE  517 (630)
T ss_pred             -hhhhheeecCCCCh
Confidence             69999999999998

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=99.60  E-value=5.9e-15  Score=121.16  Aligned_cols=148  Identities=22%  Similarity=0.316  Sum_probs=112.7

Q ss_pred             CCCcccCCCCCCCCcccccCChhhHHHhhcCc--------------cc-CCCcHHHHHHHHH------cccccccccc--
Q 036857           11 PSYWNSNKFEHPATSNTIATDFDMNKALVDDY--------------WG-PYTGKSSLIAAMA------DLDLKEFQSN--   67 (170)
Q Consensus        11 ~~~w~~~~~~~p~~~~~v~~~~~~k~~l~~~~--------------~G-PGtGKT~la~aiA------~~~l~~v~~~--   67 (170)
                      .+.+.+|...++..++++++.+.+|+.|...+              || +|||||+++||+.      ++.+..|..+  
T Consensus        12 ~~~l~~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L   91 (249)
T PF05673_consen   12 SGYLEPIKHPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL   91 (249)
T ss_pred             CCcEEecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence            57788999999999999999999999998887              89 9999999999999      2322222221  


Q ss_pred             --------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCC-CC----
Q 036857           68 --------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPL-RP----  128 (170)
Q Consensus        68 --------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~All-Rp----  128 (170)
                                    .+-|||+||+  .|.   ........|...|||..+..++++++.+|+|+.+.++.-+. |.    
T Consensus        92 ~~l~~l~~~l~~~~~kFIlf~DDL--sFe---~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~  166 (249)
T PF05673_consen   92 GDLPELLDLLRDRPYKFILFCDDL--SFE---EGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQD  166 (249)
T ss_pred             ccHHHHHHHHhcCCCCEEEEecCC--CCC---CCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCc
Confidence                          1889999987  344   33445688888999998888999999999999988876553 22    


Q ss_pred             ----------------CccceEEEcCCCCcchHHHHHHHHHhh--cCCCCHHHH
Q 036857          129 ----------------SCMDMHFHLSSHTFRHYLFEKIEERLA--KIQATPAEV  164 (170)
Q Consensus       129 ----------------gR~d~~i~~~~p~~~~~l~~~~~~~~~--~~~~s~a~i  164 (170)
                                      .||...|.|..|++.+.+ +.+...+.  +..++++++
T Consensus       167 ~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL-~IV~~~~~~~g~~~~~e~l  219 (249)
T PF05673_consen  167 DEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYL-AIVRHYAERYGLELDEEEL  219 (249)
T ss_pred             cccCcchHHHHHHhHHHhCCcEEEecCCCHHHHH-HHHHHHHHHcCCCCCHHHH
Confidence                            489999999999996554 33444443  334555444

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=99.52  E-value=6.5e-14  Score=115.49  Aligned_cols=112  Identities=14%  Similarity=0.251  Sum_probs=77.1

Q ss_pred             cccccCChhhHHHhhcCc-------------------------cc-CCCcHHHHHHHHH----cccc------cc-----
Q 036857           25 SNTIATDFDMNKALVDDY-------------------------WG-PYTGKSSLIAAMA----DLDL------KE-----   63 (170)
Q Consensus        25 ~~~v~~~~~~k~~l~~~~-------------------------~G-PGtGKT~la~aiA----~~~l------~~-----   63 (170)
                      ++++++.+.+|+++...+                         || ||||||++|+++|    ..+.      ..     
T Consensus         5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~   84 (261)
T TIGR02881         5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD   84 (261)
T ss_pred             HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence            567788888887775433                         69 9999999999998    1111      00     


Q ss_pred             ---------------cc-ccCceeEeeechhhhccCCc--cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC-----C
Q 036857           64 ---------------FQ-SNSRSILVIEDAVTSFESNA--YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD-----H  120 (170)
Q Consensus        64 ---------------v~-~~~p~il~iDEiD~~~~~~~--~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~-----~  120 (170)
                                     +. ...++||||||+|.+....+  .....+..++..|+..    ..++++|++++..+     .
T Consensus        85 l~~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~----~~~~~vila~~~~~~~~~~~  160 (261)
T TIGR02881        85 LVGEYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDN----RNEFVLILAGYSDEMDYFLS  160 (261)
T ss_pred             hhhhhccchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhcc----CCCEEEEecCCcchhHHHHh
Confidence                           00 01178999999999874221  2344567777777764    34566666654333     4


Q ss_pred             CCCCCCCCCccceEEEcCCCCc
Q 036857          121 IDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       121 lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      ++|++.+  ||+.+|+|+.++.
T Consensus       161 ~~p~L~s--Rf~~~i~f~~~~~  180 (261)
T TIGR02881       161 LNPGLRS--RFPISIDFPDYTV  180 (261)
T ss_pred             cChHHHh--ccceEEEECCCCH
Confidence            7899987  9999999988776

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>CHL00181 cbbX CbbX; Provisional

Probab=99.48  E-value=1.4e-13  Score=115.56  Aligned_cols=112  Identities=19%  Similarity=0.259  Sum_probs=79.5

Q ss_pred             cccccCChhhHHHhhcCc-------------------------cc-CCCcHHHHHHHHH----ccc------ccccc---
Q 036857           25 SNTIATDFDMNKALVDDY-------------------------WG-PYTGKSSLIAAMA----DLD------LKEFQ---   65 (170)
Q Consensus        25 ~~~v~~~~~~k~~l~~~~-------------------------~G-PGtGKT~la~aiA----~~~------l~~v~---   65 (170)
                      ++++++.+++|+++.+.+                         +| ||||||++|+++|    ..+      +..+.   
T Consensus        22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~  101 (287)
T CHL00181         22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD  101 (287)
T ss_pred             HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence            347889988988775543                         59 9999999999998    111      11000   


Q ss_pred             ------------------ccCceeEeeechhhhccCC---ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC-----
Q 036857           66 ------------------SNSRSILVIEDAVTSFESN---AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD-----  119 (170)
Q Consensus        66 ------------------~~~p~il~iDEiD~~~~~~---~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~-----  119 (170)
                                        ...++||||||+|.+...+   .........|+..|+..    ..+++||+|++...     
T Consensus       102 l~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~----~~~~~vI~ag~~~~~~~~~  177 (287)
T CHL00181        102 LVGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQ----RDDLVVIFAGYKDRMDKFY  177 (287)
T ss_pred             HHHHHhccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHHHHHHH
Confidence                              0117899999999986522   23456677788888754    34677778776322     


Q ss_pred             CCCCCCCCCCccceEEEcCCCCc
Q 036857          120 HIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       120 ~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      .++|++.|  ||+.+|+|+.++.
T Consensus       178 ~~np~L~s--R~~~~i~F~~~t~  198 (287)
T CHL00181        178 ESNPGLSS--RIANHVDFPDYTP  198 (287)
T ss_pred             hcCHHHHH--hCCceEEcCCcCH
Confidence            44699998  9999999999987

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=99.48  E-value=2.7e-13  Score=111.12  Aligned_cols=131  Identities=23%  Similarity=0.266  Sum_probs=106.1

Q ss_pred             CCCcccCCCCCCCCcccccCChhhHHHhhcCc--------------cc-CCCcHHHHHHHHH------ccccccccccC-
Q 036857           11 PSYWNSNKFEHPATSNTIATDFDMNKALVDDY--------------WG-PYTGKSSLIAAMA------DLDLKEFQSNS-   68 (170)
Q Consensus        11 ~~~w~~~~~~~p~~~~~v~~~~~~k~~l~~~~--------------~G-PGtGKT~la~aiA------~~~l~~v~~~~-   68 (170)
                      .+++++++..++..+.++++.+.+|+.++...              || .|||||+++||+-      .+.+.+|.-.. 
T Consensus        45 ~~~L~pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl  124 (287)
T COG2607          45 IGYLEPVPDPDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL  124 (287)
T ss_pred             cCcccCCCCCCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH
Confidence            57888999999999999999999999998887              89 9999999999998      33344433221 


Q ss_pred             ---------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCC-------
Q 036857           69 ---------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPL-------  126 (170)
Q Consensus        69 ---------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~All-------  126 (170)
                                     +-|||+||+  .|.   ........|-..|||-.+..+.+|++.+|+|+.+.|+.-+.       
T Consensus       125 ~~Lp~l~~~Lr~~~~kFIlFcDDL--SFe---~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~  199 (287)
T COG2607         125 ATLPDLVELLRARPEKFILFCDDL--SFE---EGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTG  199 (287)
T ss_pred             hhHHHHHHHHhcCCceEEEEecCC--CCC---CCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCCCccc
Confidence                           889999998  444   33455777888999999888999999999999998874331       


Q ss_pred             -------------CCCccceEEEcCCCCcchHH
Q 036857          127 -------------RPSCMDMHFHLSSHTFRHYL  146 (170)
Q Consensus       127 -------------RpgR~d~~i~~~~p~~~~~l  146 (170)
                                   =+.||...+.|..|++.+++
T Consensus       200 eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL  232 (287)
T COG2607         200 EIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYL  232 (287)
T ss_pred             ccChhHHHHHhhchhhhcceeecccCCCHHHHH
Confidence                         24699999999999996554

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=99.46  E-value=3.9e-13  Score=112.82  Aligned_cols=118  Identities=13%  Similarity=0.109  Sum_probs=86.7

Q ss_pred             CcccCCCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-c-------ccccc---------
Q 036857           13 YWNSNKFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-D-------LDLKE---------   63 (170)
Q Consensus        13 ~w~~~~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~-------~~l~~---------   63 (170)
                      ...++....|.+|+++++++.+++.+...+           || ||+|||++|++++ .       ++...         
T Consensus         8 ~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~~~~~~i~~~   87 (316)
T PHA02544          8 EFMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSDCRIDFVRNR   87 (316)
T ss_pred             CCcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCcccHHHHHHH
Confidence            555667899999999999999999887655           69 9999999999999 1       11110         


Q ss_pred             cc--------ccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEE
Q 036857           64 FQ--------SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHF  135 (170)
Q Consensus        64 v~--------~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i  135 (170)
                      +.        ...+.+|+|||+|.+..     ......+...++..    +.++.+|+|||.+..+++++.+  |+. .+
T Consensus        88 l~~~~~~~~~~~~~~vliiDe~d~l~~-----~~~~~~L~~~le~~----~~~~~~Ilt~n~~~~l~~~l~s--R~~-~i  155 (316)
T PHA02544         88 LTRFASTVSLTGGGKVIIIDEFDRLGL-----ADAQRHLRSFMEAY----SKNCSFIITANNKNGIIEPLRS--RCR-VI  155 (316)
T ss_pred             HHHHHHhhcccCCCeEEEEECcccccC-----HHHHHHHHHHHHhc----CCCceEEEEcCChhhchHHHHh--hce-EE
Confidence            10        01278999999997722     11233444445553    3577889999999999999986  774 68


Q ss_pred             EcCCCCc
Q 036857          136 HLSSHTF  142 (170)
Q Consensus       136 ~~~~p~~  142 (170)
                      .|+.|+.
T Consensus       156 ~~~~p~~  162 (316)
T PHA02544        156 DFGVPTK  162 (316)
T ss_pred             EeCCCCH
Confidence            8888887

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=99.44  E-value=7.1e-13  Score=107.86  Aligned_cols=117  Identities=15%  Similarity=0.122  Sum_probs=75.8

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc---------------cc-CCCcHHHHHHHHH---cccccccccc-----------
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY---------------WG-PYTGKSSLIAAMA---DLDLKEFQSN-----------   67 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~---------------~G-PGtGKT~la~aiA---~~~l~~v~~~-----------   67 (170)
                      ....|.+|++.+++++++..+.-.+               || ||||||++|+.||   +.++..+...           
T Consensus        16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~i   95 (233)
T PF05496_consen   16 ERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAI   95 (233)
T ss_dssp             HHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHH
T ss_pred             HhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHH
Confidence            4678999999999999998764322               89 9999999999999   3333222211           


Q ss_pred             -----CceeEeeechhhhccCCccchHHHHHHHHHhhchh-----ccCC---------CCeEEEEeCCCCCCCCCCCCCC
Q 036857           68 -----SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLW-----SSSG---------DGRILVMTTDYKDHIDPVPLRP  128 (170)
Q Consensus        68 -----~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~-----~~~~---------~~~~vi~tTN~~~~lD~AllRp  128 (170)
                           ...|||+|||+.+      +......|+..|+...     ...+         ....+|.||++...|.+.|+  
T Consensus        96 l~~l~~~~ILFIDEIHRl------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLr--  167 (233)
T PF05496_consen   96 LTNLKEGDILFIDEIHRL------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLR--  167 (233)
T ss_dssp             HHT--TT-EEEECTCCC--------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCC--
T ss_pred             HHhcCCCcEEEEechhhc------cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHH--
Confidence                 1889999999877      3344555666665321     1111         13578999999999999998  


Q ss_pred             CccceEEEcCCCCc
Q 036857          129 SCMDMHFHLSSHTF  142 (170)
Q Consensus       129 gR~d~~i~~~~p~~  142 (170)
                      .||.+..++.+-+.
T Consensus       168 dRFgi~~~l~~Y~~  181 (233)
T PF05496_consen  168 DRFGIVLRLEFYSE  181 (233)
T ss_dssp             TTSSEEEE----TH
T ss_pred             hhcceecchhcCCH
Confidence            59999888887666

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=99.44  E-value=6.5e-13  Score=112.84  Aligned_cols=116  Identities=13%  Similarity=0.103  Sum_probs=81.5

Q ss_pred             CCCCCCcccccCChhhHHHhhcCc---------------cc-CCCcHHHHHHHHH---ccccccccc-------------
Q 036857           19 FEHPATSNTIATDFDMNKALVDDY---------------WG-PYTGKSSLIAAMA---DLDLKEFQS-------------   66 (170)
Q Consensus        19 ~~~p~~~~~v~~~~~~k~~l~~~~---------------~G-PGtGKT~la~aiA---~~~l~~v~~-------------   66 (170)
                      ...|.+|+++++.+..++.+...+               || ||||||++|+++|   ...+..+..             
T Consensus        18 ~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l~~~l   97 (328)
T PRK00080         18 SLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDLAAIL   97 (328)
T ss_pred             hcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHHHHHH
Confidence            567889999999999998774332               79 9999999999999   222211111             


Q ss_pred             ---cCceeEeeechhhhccCCccchHHHHHHHHHhhchh-----cc---------CCCCeEEEEeCCCCCCCCCCCCCCC
Q 036857           67 ---NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLW-----SS---------SGDGRILVMTTDYKDHIDPVPLRPS  129 (170)
Q Consensus        67 ---~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~-----~~---------~~~~~~vi~tTN~~~~lD~AllRpg  129 (170)
                         ..++||||||+|.+...      ....+.+.|+...     ..         ...+..+|+|||++..+++++..  
T Consensus        98 ~~l~~~~vl~IDEi~~l~~~------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s--  169 (328)
T PRK00080         98 TNLEEGDVLFIDEIHRLSPV------VEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD--  169 (328)
T ss_pred             HhcccCCEEEEecHhhcchH------HHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH--
Confidence               12789999999988431      1122333333211     00         01246789999999999999875  


Q ss_pred             ccceEEEcCCCCc
Q 036857          130 CMDMHFHLSSHTF  142 (170)
Q Consensus       130 R~d~~i~~~~p~~  142 (170)
                      ||...++++.|+.
T Consensus       170 Rf~~~~~l~~~~~  182 (328)
T PRK00080        170 RFGIVQRLEFYTV  182 (328)
T ss_pred             hcCeeeecCCCCH
Confidence            9999999999888

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=99.42  E-value=1.2e-12  Score=109.50  Aligned_cols=111  Identities=15%  Similarity=0.096  Sum_probs=77.9

Q ss_pred             CcccccCChhhHHHhhcCc---------------cc-CCCcHHHHHHHHH---ccccccccc----------------cC
Q 036857           24 TSNTIATDFDMNKALVDDY---------------WG-PYTGKSSLIAAMA---DLDLKEFQS----------------NS   68 (170)
Q Consensus        24 ~~~~v~~~~~~k~~l~~~~---------------~G-PGtGKT~la~aiA---~~~l~~v~~----------------~~   68 (170)
                      +|+++++.++.++++...+               || ||||||++|+++|   ..++..+..                ..
T Consensus         2 ~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~   81 (305)
T TIGR00635         2 LLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNLEE   81 (305)
T ss_pred             CHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHHhccc
Confidence            6888999999888765433               79 9999999999999   222222111                12


Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhc--------------cCCCCeEEEEeCCCCCCCCCCCCCCCccceE
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWS--------------SSGDGRILVMTTDYKDHIDPVPLRPSCMDMH  134 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~--------------~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~  134 (170)
                      +.++||||+|.+...      ....|.+.++....              ....+..+|++||++..++++++.  ||...
T Consensus        82 ~~vl~iDEi~~l~~~------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~  153 (305)
T TIGR00635        82 GDVLFIDEIHRLSPA------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD--RFGII  153 (305)
T ss_pred             CCEEEEehHhhhCHH------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh--hcceE
Confidence            789999999988541      12334444432210              001247889999999999999886  99999


Q ss_pred             EEcCCCCc
Q 036857          135 FHLSSHTF  142 (170)
Q Consensus       135 i~~~~p~~  142 (170)
                      ++++.++.
T Consensus       154 ~~l~~l~~  161 (305)
T TIGR00635       154 LRLEFYTV  161 (305)
T ss_pred             EEeCCCCH
Confidence            99998887

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>TIGR00763 lon ATP-dependent protease La

Probab=99.40  E-value=5.6e-13  Score=125.01  Aligned_cols=111  Identities=20%  Similarity=0.176  Sum_probs=78.2

Q ss_pred             cccCChhhHHHhhcCc----------------cc-CCCcHHHHHHHHH---cccccc-----------ccc---------
Q 036857           27 TIATDFDMNKALVDDY----------------WG-PYTGKSSLIAAMA---DLDLKE-----------FQS---------   66 (170)
Q Consensus        27 ~v~~~~~~k~~l~~~~----------------~G-PGtGKT~la~aiA---~~~l~~-----------v~~---------   66 (170)
                      ++.+.+++|+.+...+                || ||||||++|+++|   ...+..           +..         
T Consensus       321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~  400 (775)
T TIGR00763       321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAM  400 (775)
T ss_pred             hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCC
Confidence            3677888888876533                69 9999999999999   111111           100         


Q ss_pred             ------------cCceeEeeechhhhccCCccchHHHHHHHHHhhchhc-----c------CCCCeEEEEeCCCCCCCCC
Q 036857           67 ------------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWS-----S------SGDGRILVMTTDYKDHIDP  123 (170)
Q Consensus        67 ------------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~-----~------~~~~~~vi~tTN~~~~lD~  123 (170)
                                  ..+.||||||||.+....  .....+.|++.||....     .      ...++++|+|||.++.+|+
T Consensus       401 ~g~i~~~l~~~~~~~~villDEidk~~~~~--~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~  478 (775)
T TIGR00763       401 PGRIIQGLKKAKTKNPLFLLDEIDKIGSSF--RGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPR  478 (775)
T ss_pred             CchHHHHHHHhCcCCCEEEEechhhcCCcc--CCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCH
Confidence                        014589999999998632  22345778888874110     0      0146899999999999999


Q ss_pred             CCCCCCccceEEEcCCCCc
Q 036857          124 VPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       124 AllRpgR~d~~i~~~~p~~  142 (170)
                      ++++  ||+ .|+|+.|+.
T Consensus       479 ~L~~--R~~-vi~~~~~~~  494 (775)
T TIGR00763       479 PLLD--RME-VIELSGYTE  494 (775)
T ss_pred             HHhC--Cee-EEecCCCCH
Confidence            9997  996 689998886

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=99.39  E-value=1.3e-12  Score=109.49  Aligned_cols=110  Identities=18%  Similarity=0.244  Sum_probs=78.2

Q ss_pred             cccCChhhHHHhhcCc-------------------------cc-CCCcHHHHHHHHH----ccc------ccccc-----
Q 036857           27 TIATDFDMNKALVDDY-------------------------WG-PYTGKSSLIAAMA----DLD------LKEFQ-----   65 (170)
Q Consensus        27 ~v~~~~~~k~~l~~~~-------------------------~G-PGtGKT~la~aiA----~~~------l~~v~-----   65 (170)
                      ++++.+++|+++.+.+                         +| ||||||++|+++|    ..+      +..+.     
T Consensus        23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~  102 (284)
T TIGR02880        23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV  102 (284)
T ss_pred             hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence            6888888888875532                         59 9999999999998    111      11110     


Q ss_pred             ----c------------cCceeEeeechhhhccC---CccchHHHHHHHHHhhchhccCCCCeEEEEeCCC--CC---CC
Q 036857           66 ----S------------NSRSILVIEDAVTSFES---NAYNSVALSALLKFVDGLWSSSGDGRILVMTTDY--KD---HI  121 (170)
Q Consensus        66 ----~------------~~p~il~iDEiD~~~~~---~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~--~~---~l  121 (170)
                          .            ..+++|||||+|.+...   +.......+.|++.|+.-    ..++++|+|++.  .+   .+
T Consensus       103 ~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~----~~~~~vI~a~~~~~~~~~~~~  178 (284)
T TIGR02880       103 GQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQ----RDDLVVILAGYKDRMDSFFES  178 (284)
T ss_pred             HhhcccchHHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHHHHHHHhh
Confidence                0            11799999999988542   123455677888888754    357788887763  23   35


Q ss_pred             CCCCCCCCccceEEEcCCCCc
Q 036857          122 DPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       122 D~AllRpgR~d~~i~~~~p~~  142 (170)
                      +|++.|  ||+..|+|+.++.
T Consensus       179 np~L~s--R~~~~i~fp~l~~  197 (284)
T TIGR02880       179 NPGFSS--RVAHHVDFPDYSE  197 (284)
T ss_pred             CHHHHh--hCCcEEEeCCcCH
Confidence            899998  9999999999885

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PLN03025 replication factor C subunit; Provisional

Probab=99.38  E-value=2.3e-12  Score=109.16  Aligned_cols=137  Identities=16%  Similarity=0.168  Sum_probs=91.9

Q ss_pred             cCCCCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-cc------------cccc------cc
Q 036857           16 SNKFEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-DL------------DLKE------FQ   65 (170)
Q Consensus        16 ~~~~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~~------------~l~~------v~   65 (170)
                      ++...+|.+|+++++++++.+.|...+          || ||||||++|+++| .+            +-+.      +.
T Consensus         3 w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr   82 (319)
T PLN03025          3 WVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVR   82 (319)
T ss_pred             hhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHH
Confidence            456889999999999999988876544          79 9999999999999 11            1111      00


Q ss_pred             --------------ccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCcc
Q 036857           66 --------------SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCM  131 (170)
Q Consensus        66 --------------~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~  131 (170)
                                    ...+.|++|||+|.+..      ...+.|+..|+..    +....+|++||..+.+.+++..  |+
T Consensus        83 ~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~------~aq~aL~~~lE~~----~~~t~~il~~n~~~~i~~~L~S--Rc  150 (319)
T PLN03025         83 NKIKMFAQKKVTLPPGRHKIVILDEADSMTS------GAQQALRRTMEIY----SNTTRFALACNTSSKIIEPIQS--RC  150 (319)
T ss_pred             HHHHHHHhccccCCCCCeEEEEEechhhcCH------HHHHHHHHHHhcc----cCCceEEEEeCCccccchhHHH--hh
Confidence                          01257999999998843      2345566666543    3456678889999999999885  55


Q ss_pred             ceEEEcCCCCcchHHHHHHHHHhh--cCCCCHHHHHH
Q 036857          132 DMHFHLSSHTFRHYLFEKIEERLA--KIQATPAEVPG  166 (170)
Q Consensus       132 d~~i~~~~p~~~~~l~~~~~~~~~--~~~~s~a~i~~  166 (170)
                       ..++|..|+.. .+...+...+.  +..++++.+..
T Consensus       151 -~~i~f~~l~~~-~l~~~L~~i~~~egi~i~~~~l~~  185 (319)
T PLN03025        151 -AIVRFSRLSDQ-EILGRLMKVVEAEKVPYVPEGLEA  185 (319)
T ss_pred             -hcccCCCCCHH-HHHHHHHHHHHHcCCCCCHHHHHH
Confidence             47888888762 22233333332  33455555443

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.35  E-value=5.8e-12  Score=112.44  Aligned_cols=112  Identities=17%  Similarity=0.255  Sum_probs=83.2

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-ccc------------------------
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLD------------------------   60 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~------------------------   60 (170)
                      ...+|.+|+++++++++++.|...+           || ||||||++|+++| .++                        
T Consensus         6 ~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~   85 (472)
T PRK14962          6 RKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTF   85 (472)
T ss_pred             HHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCC
Confidence            3678999999999999988876644           79 9999999999999 211                        


Q ss_pred             --ccccccc----------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857           61 --LKEFQSN----------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD  116 (170)
Q Consensus        61 --l~~v~~~----------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN  116 (170)
                        +..+...                      ...|+|+||+|.+..      ...+.|+..++..    +..+++|++||
T Consensus        86 ~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~------~a~~~LLk~LE~p----~~~vv~Ilatt  155 (472)
T PRK14962         86 MDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK------EAFNALLKTLEEP----PSHVVFVLATT  155 (472)
T ss_pred             CccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH------HHHHHHHHHHHhC----CCcEEEEEEeC
Confidence              1111110                      046999999998732      3456777777654    34677777777


Q ss_pred             CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          117 YKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       117 ~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      .++.+++++..  |+ ..++|..++.
T Consensus       156 n~~kl~~~L~S--R~-~vv~f~~l~~  178 (472)
T PRK14962        156 NLEKVPPTIIS--RC-QVIEFRNISD  178 (472)
T ss_pred             ChHhhhHHHhc--Cc-EEEEECCccH
Confidence            78899999987  55 3788888877

>PRK04195 replication factor C large subunit; Provisional

Probab=99.34  E-value=6.6e-12  Score=112.03  Aligned_cols=117  Identities=15%  Similarity=0.206  Sum_probs=83.7

Q ss_pred             cCCCCCCCCcccccCChhhHHHhhcCc--------------cc-CCCcHHHHHHHHH-ccc-------ccc---------
Q 036857           16 SNKFEHPATSNTIATDFDMNKALVDDY--------------WG-PYTGKSSLIAAMA-DLD-------LKE---------   63 (170)
Q Consensus        16 ~~~~~~p~~~~~v~~~~~~k~~l~~~~--------------~G-PGtGKT~la~aiA-~~~-------l~~---------   63 (170)
                      ++....|.+|++++++++.++++...+              || ||||||++|+++| .++       .+.         
T Consensus         4 W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~   83 (482)
T PRK04195          4 WVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIER   83 (482)
T ss_pred             chhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHH
Confidence            566889999999999999998886543              79 9999999999999 111       111         


Q ss_pred             ----------ccccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccce
Q 036857           64 ----------FQSNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDM  133 (170)
Q Consensus        64 ----------v~~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~  133 (170)
                                ++...+.||+|||+|.+...  .....+.++++.++.      .+..+|+++|.+..+++.-+|  +...
T Consensus        84 ~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~--~d~~~~~aL~~~l~~------~~~~iIli~n~~~~~~~k~Lr--sr~~  153 (482)
T PRK04195         84 VAGEAATSGSLFGARRKLILLDEVDGIHGN--EDRGGARAILELIKK------AKQPIILTANDPYDPSLRELR--NACL  153 (482)
T ss_pred             HHHHhhccCcccCCCCeEEEEecCcccccc--cchhHHHHHHHHHHc------CCCCEEEeccCccccchhhHh--ccce
Confidence                      11113679999999998652  223345667666653      244567788988888874344  4456


Q ss_pred             EEEcCCCCc
Q 036857          134 HFHLSSHTF  142 (170)
Q Consensus       134 ~i~~~~p~~  142 (170)
                      .|+|+.|+.
T Consensus       154 ~I~f~~~~~  162 (482)
T PRK04195        154 MIEFKRLST  162 (482)
T ss_pred             EEEecCCCH
Confidence            799998887

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.33  E-value=5.1e-12  Score=112.66  Aligned_cols=114  Identities=17%  Similarity=0.204  Sum_probs=85.9

Q ss_pred             cCCCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-ccc----------------------
Q 036857           16 SNKFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLD----------------------   60 (170)
Q Consensus        16 ~~~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~----------------------   60 (170)
                      ......|.+|+++++++.+.+.|...+           || ||||||++|+++| .++                      
T Consensus         8 L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g   87 (484)
T PRK14956          8 LSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKG   87 (484)
T ss_pred             hHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHcc
Confidence            445789999999999999988776655           69 9999999999999 211                      


Q ss_pred             ----cccccc--c--------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEe
Q 036857           61 ----LKEFQS--N--------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMT  114 (170)
Q Consensus        61 ----l~~v~~--~--------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~t  114 (170)
                          +..+..  +                    ...|+||||+|.+.      ....++||..|+.-    +..+++|++
T Consensus        88 ~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls------~~A~NALLKtLEEP----p~~viFILa  157 (484)
T PRK14956         88 ISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT------DQSFNALLKTLEEP----PAHIVFILA  157 (484)
T ss_pred             CCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC------HHHHHHHHHHhhcC----CCceEEEee
Confidence                111111  0                    04599999999873      35678888888653    468899999


Q ss_pred             CCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          115 TDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       115 TN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      ||.++.|.++++.  |+ .++.|..++.
T Consensus       158 Tte~~kI~~TI~S--RC-q~~~f~~ls~  182 (484)
T PRK14956        158 TTEFHKIPETILS--RC-QDFIFKKVPL  182 (484)
T ss_pred             cCChhhccHHHHh--hh-heeeecCCCH
Confidence            9999999999986  66 3567766665

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.32  E-value=4e-12  Score=118.64  Aligned_cols=137  Identities=15%  Similarity=0.206  Sum_probs=88.3

Q ss_pred             CCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-c-----------------ccccccc------
Q 036857           21 HPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-D-----------------LDLKEFQ------   65 (170)
Q Consensus        21 ~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~-----------------~~l~~v~------   65 (170)
                      .|..++.+++.++.-+++...+          || ||||||++|+++| .                 +++..+.      
T Consensus       177 r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~  256 (731)
T TIGR02639       177 KNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYR  256 (731)
T ss_pred             hcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhcccc
Confidence            6677899999888777776644          89 9999999999999 1                 1111111      


Q ss_pred             ---------------ccCceeEeeechhhhccCCc--cc-hHHHHHHHHHhhchhccCCCCeEEEEeCCCCC-----CCC
Q 036857           66 ---------------SNSRSILVIEDAVTSFESNA--YN-SVALSALLKFVDGLWSSSGDGRILVMTTDYKD-----HID  122 (170)
Q Consensus        66 ---------------~~~p~il~iDEiD~~~~~~~--~~-~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~-----~lD  122 (170)
                                     ...++||||||+|.+++.+.  .. ....+.|...+.      .+.+.+|+|||..+     .+|
T Consensus       257 g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~------~g~i~~IgaTt~~e~~~~~~~d  330 (731)
T TIGR02639       257 GDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS------SGKLRCIGSTTYEEYKNHFEKD  330 (731)
T ss_pred             chHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh------CCCeEEEEecCHHHHHHHhhhh
Confidence                           01189999999999987332  11 122233333332      25788899998633     689


Q ss_pred             CCCCCCCccceEEEcCCCCc--chHHHHHHHHHh---hcCCCCHHHHHH
Q 036857          123 PVPLRPSCMDMHFHLSSHTF--RHYLFEKIEERL---AKIQATPAEVPG  166 (170)
Q Consensus       123 ~AllRpgR~d~~i~~~~p~~--~~~l~~~~~~~~---~~~~~s~a~i~~  166 (170)
                      +|+.|  ||. .|+++.|+.  ...+++.+....   ....++++.+..
T Consensus       331 ~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~  376 (731)
T TIGR02639       331 RALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEA  376 (731)
T ss_pred             HHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHH
Confidence            99999  997 799999998  223333222222   123466666544

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=99.28  E-value=2e-11  Score=113.49  Aligned_cols=113  Identities=18%  Similarity=0.209  Sum_probs=85.9

Q ss_pred             CCCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-ccc-----------------------
Q 036857           17 NKFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLD-----------------------   60 (170)
Q Consensus        17 ~~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~-----------------------   60 (170)
                      ..+.+|.+|+++++++.+++.|.+.+           +| ||||||++|+++| .++                       
T Consensus         7 arKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~   86 (830)
T PRK07003          7 ARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGR   86 (830)
T ss_pred             HHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCC
Confidence            34678999999999999999887655           69 9999999999999 221                       


Q ss_pred             ---ccccccc----------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeC
Q 036857           61 ---LKEFQSN----------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTT  115 (170)
Q Consensus        61 ---l~~v~~~----------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tT  115 (170)
                         +.++...                      ...|+||||+|.+.      ....+.||..|+.-    ...+.+|++|
T Consensus        87 h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT------~~A~NALLKtLEEP----P~~v~FILaT  156 (830)
T PRK07003         87 FVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT------NHAFNAMLKTLEEP----PPHVKFILAT  156 (830)
T ss_pred             CceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCC------HHHHHHHHHHHHhc----CCCeEEEEEE
Confidence               1111110                      05699999999873      34577888877664    4588999999


Q ss_pred             CCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          116 DYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       116 N~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      |.++.|.+.++.  |+ .++.|..++.
T Consensus       157 td~~KIp~TIrS--RC-q~f~Fk~Ls~  180 (830)
T PRK07003        157 TDPQKIPVTVLS--RC-LQFNLKQMPA  180 (830)
T ss_pred             CChhhccchhhh--he-EEEecCCcCH
Confidence            999999999885  66 6777877665

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.27  E-value=3.1e-11  Score=104.25  Aligned_cols=112  Identities=19%  Similarity=0.214  Sum_probs=82.9

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc-------------------------
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL-------------------------   59 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~-------------------------   59 (170)
                      ....|.+|+++++++.+.+.+...+           +| ||||||++|+++| .+                         
T Consensus         8 ~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~   87 (363)
T PRK14961          8 RKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLC   87 (363)
T ss_pred             HHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence            4668999999999999998876655           69 9999999999999 21                         


Q ss_pred             -cccccccc----------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857           60 -DLKEFQSN----------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD  116 (170)
Q Consensus        60 -~l~~v~~~----------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN  116 (170)
                       ++..+...                      ...|++|||+|.+.      ....+.++..++..    +..+.+|++|+
T Consensus        88 ~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~------~~a~naLLk~lEe~----~~~~~fIl~t~  157 (363)
T PRK14961         88 LDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS------RHSFNALLKTLEEP----PQHIKFILATT  157 (363)
T ss_pred             CceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC------HHHHHHHHHHHhcC----CCCeEEEEEcC
Confidence             11111100                      04599999999772      34456788877664    35677788888


Q ss_pred             CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          117 YKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       117 ~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      .++.+.+++..  |+ ..++|..++.
T Consensus       158 ~~~~l~~tI~S--Rc-~~~~~~~l~~  180 (363)
T PRK14961        158 DVEKIPKTILS--RC-LQFKLKIISE  180 (363)
T ss_pred             ChHhhhHHHHh--hc-eEEeCCCCCH
Confidence            88889988874  65 6788888877

>PRK13342 recombination factor protein RarA; Reviewed

Probab=99.26  E-value=2.2e-11  Score=106.69  Aligned_cols=111  Identities=23%  Similarity=0.311  Sum_probs=75.3

Q ss_pred             CCCCCCCCcccccCChhhHHH---hhcCc----------cc-CCCcHHHHHHHHH---cccccccc--------------
Q 036857           17 NKFEHPATSNTIATDFDMNKA---LVDDY----------WG-PYTGKSSLIAAMA---DLDLKEFQ--------------   65 (170)
Q Consensus        17 ~~~~~p~~~~~v~~~~~~k~~---l~~~~----------~G-PGtGKT~la~aiA---~~~l~~v~--------------   65 (170)
                      ....+|.+|++++++++....   +...+          || ||||||++|+++|   ...+..+.              
T Consensus         3 a~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~~~ir~ii~   82 (413)
T PRK13342          3 AERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREVIE   82 (413)
T ss_pred             hhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccHHHHHHHHH
Confidence            346789999999999877433   43333          79 9999999999999   11111110              


Q ss_pred             -------ccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeC--CCCCCCCCCCCCCCccceEEE
Q 036857           66 -------SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTT--DYKDHIDPVPLRPSCMDMHFH  136 (170)
Q Consensus        66 -------~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tT--N~~~~lD~AllRpgR~d~~i~  136 (170)
                             .....||||||+|.+..      .....|+..++.      ..+++|++|  |....+++++++  |+ ..+.
T Consensus        83 ~~~~~~~~g~~~vL~IDEi~~l~~------~~q~~LL~~le~------~~iilI~att~n~~~~l~~aL~S--R~-~~~~  147 (413)
T PRK13342         83 EARQRRSAGRRTILFIDEIHRFNK------AQQDALLPHVED------GTITLIGATTENPSFEVNPALLS--RA-QVFE  147 (413)
T ss_pred             HHHHhhhcCCceEEEEechhhhCH------HHHHHHHHHhhc------CcEEEEEeCCCChhhhccHHHhc--cc-eeeE
Confidence                   01268999999998743      234556666543      245555554  456689999997  66 6788


Q ss_pred             cCCCCc
Q 036857          137 LSSHTF  142 (170)
Q Consensus       137 ~~~p~~  142 (170)
                      |..++.
T Consensus       148 ~~~ls~  153 (413)
T PRK13342        148 LKPLSE  153 (413)
T ss_pred             eCCCCH
Confidence            888876

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=99.26  E-value=1.8e-11  Score=103.23  Aligned_cols=111  Identities=19%  Similarity=0.284  Sum_probs=83.0

Q ss_pred             cCCCCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-cc-------------cccc------c
Q 036857           16 SNKFEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-DL-------------DLKE------F   64 (170)
Q Consensus        16 ~~~~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~~-------------~l~~------v   64 (170)
                      +.....|.+|+++++++.+.+.|.+.+          || ||||||+.|+++| .+             +.+.      +
T Consensus        26 wteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvv  105 (346)
T KOG0989|consen   26 WTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVV  105 (346)
T ss_pred             hHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccch
Confidence            456889999999999999988777666          89 9999999999999 11             1110      0


Q ss_pred             cc--cC------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCC
Q 036857           65 QS--NS------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPV  124 (170)
Q Consensus        65 ~~--~~------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~A  124 (170)
                      ..  +.                  .-|++|||+|++      .+...++|...||..    ...+.+|+-||+.+.|.+-
T Consensus       106 r~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm------tsdaq~aLrr~mE~~----s~~trFiLIcnylsrii~p  175 (346)
T KOG0989|consen  106 REKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSM------TSDAQAALRRTMEDF----SRTTRFILICNYLSRIIRP  175 (346)
T ss_pred             hhhhcCHHHHhhccccccCCCCCcceEEEEechhhh------hHHHHHHHHHHHhcc----ccceEEEEEcCChhhCChH
Confidence            00  00                  379999999987      446678888888884    3578899999999999888


Q ss_pred             CCCCCccceEEEcCC
Q 036857          125 PLRPSCMDMHFHLSS  139 (170)
Q Consensus       125 llRpgR~d~~i~~~~  139 (170)
                      +..  |. -++.|+.
T Consensus       176 i~S--RC-~KfrFk~  187 (346)
T KOG0989|consen  176 LVS--RC-QKFRFKK  187 (346)
T ss_pred             HHh--hH-HHhcCCC
Confidence            874  54 3445544

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=9.9e-12  Score=114.06  Aligned_cols=109  Identities=17%  Similarity=0.193  Sum_probs=77.7

Q ss_pred             cCChhhHHHhhcCc----------------cc-CCCcHHHHHHHHH--------ccccccccccC---------------
Q 036857           29 ATDFDMNKALVDDY----------------WG-PYTGKSSLIAAMA--------DLDLKEFQSNS---------------   68 (170)
Q Consensus        29 ~~~~~~k~~l~~~~----------------~G-PGtGKT~la~aiA--------~~~l~~v~~~~---------------   68 (170)
                      -+.+++|+++++.+                .| ||+|||+++++||        ++.+.-+.+.+               
T Consensus       326 YGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPG  405 (782)
T COG0466         326 YGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPG  405 (782)
T ss_pred             cCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCCh
Confidence            35567888888776                59 9999999999999        22222222221               


Q ss_pred             ------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccC-----------CCCeEEEEeCCCCCCCCCCC
Q 036857           69 ------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSS-----------GDGRILVMTTDYKDHIDPVP  125 (170)
Q Consensus        69 ------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~-----------~~~~~vi~tTN~~~~lD~Al  125 (170)
                                  ..++++||||.+..  +.....-++||+.||--....           -.+|++|+|+|..+.||.+|
T Consensus       406 rIiQ~mkka~~~NPv~LLDEIDKm~s--s~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PL  483 (782)
T COG0466         406 KIIQGMKKAGVKNPVFLLDEIDKMGS--SFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPL  483 (782)
T ss_pred             HHHHHHHHhCCcCCeEEeechhhccC--CCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHH
Confidence                        77899999999987  344556788898887432110           12689999999999999999


Q ss_pred             CCCCccceEEEcCCCC
Q 036857          126 LRPSCMDMHFHLSSHT  141 (170)
Q Consensus       126 lRpgR~d~~i~~~~p~  141 (170)
                      +  +|++..=--+|-.
T Consensus       484 l--DRMEiI~lsgYt~  497 (782)
T COG0466         484 L--DRMEVIRLSGYTE  497 (782)
T ss_pred             h--cceeeeeecCCCh
Confidence            9  5887644444433

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=99.25  E-value=1.9e-11  Score=115.85  Aligned_cols=137  Identities=18%  Similarity=0.194  Sum_probs=88.2

Q ss_pred             CCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-c-----------------cccccccc----
Q 036857           20 EHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-D-----------------LDLKEFQS----   66 (170)
Q Consensus        20 ~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~-----------------~~l~~v~~----   66 (170)
                      ..|..++.+++.++.-.++...+          +| ||||||++|+.+| .                 +++..+..    
T Consensus       181 ~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~  260 (852)
T TIGR03345       181 AREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASV  260 (852)
T ss_pred             hcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhccccc
Confidence            45778999999888777666433          79 9999999999999 1                 11111110    


Q ss_pred             ------------------cCceeEeeechhhhccCCcc--chHHHHHHHHHhhchhccCCCCeEEEEeCCCCC-----CC
Q 036857           67 ------------------NSRSILVIEDAVTSFESNAY--NSVALSALLKFVDGLWSSSGDGRILVMTTDYKD-----HI  121 (170)
Q Consensus        67 ------------------~~p~il~iDEiD~~~~~~~~--~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~-----~l  121 (170)
                                        ..++||||||++.+.+.++.  .....+-|+..+    .  .+.+.+|+||+..+     .+
T Consensus       261 ~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l----~--~G~l~~IgaTT~~e~~~~~~~  334 (852)
T TIGR03345       261 KGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL----A--RGELRTIAATTWAEYKKYFEK  334 (852)
T ss_pred             chHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh----h--CCCeEEEEecCHHHHhhhhhc
Confidence                              01789999999999873321  111122233322    2  35788888888643     59


Q ss_pred             CCCCCCCCccceEEEcCCCCc--chHHHHHHHHHhhc---CCCCHHHHH
Q 036857          122 DPVPLRPSCMDMHFHLSSHTF--RHYLFEKIEERLAK---IQATPAEVP  165 (170)
Q Consensus       122 D~AllRpgR~d~~i~~~~p~~--~~~l~~~~~~~~~~---~~~s~a~i~  165 (170)
                      |+||.|  ||. .|+++.|+.  ...++..+...+..   ..+++..+.
T Consensus       335 d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~  380 (852)
T TIGR03345       335 DPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVV  380 (852)
T ss_pred             cHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHH
Confidence            999999  995 799999998  33444444443332   235555544

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.24  E-value=1.9e-11  Score=112.28  Aligned_cols=112  Identities=19%  Similarity=0.222  Sum_probs=86.7

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cccc-----------------------
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLDL-----------------------   61 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~l-----------------------   61 (170)
                      .+.+|.+|++|++++.+++.|.+.+           +| +|||||++|+.+| .++.                       
T Consensus         8 rKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I   87 (700)
T PRK12323          8 RKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEI   87 (700)
T ss_pred             HHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHH
Confidence            4678999999999999999888766           59 9999999999999 2221                       


Q ss_pred             --------cccccc----------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEE
Q 036857           62 --------KEFQSN----------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRIL  111 (170)
Q Consensus        62 --------~~v~~~----------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~v  111 (170)
                              ..+...                      ...|+||||+|.+.      ....+.||..|+.-    +.++++
T Consensus        88 ~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls------~~AaNALLKTLEEP----P~~v~F  157 (700)
T PRK12323         88 DAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT------NHAFNAMLKTLEEP----PEHVKF  157 (700)
T ss_pred             HcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC------HHHHHHHHHhhccC----CCCceE
Confidence                    111100                      05699999999873      34577888877663    468899


Q ss_pred             EEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          112 VMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       112 i~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      |++||.++.|.+.++.  |+ .++.|..++.
T Consensus       158 ILaTtep~kLlpTIrS--RC-q~f~f~~ls~  185 (700)
T PRK12323        158 ILATTDPQKIPVTVLS--RC-LQFNLKQMPP  185 (700)
T ss_pred             EEEeCChHhhhhHHHH--HH-HhcccCCCCh
Confidence            9999999999999985  65 6778877776

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=99.24  E-value=6.1e-12  Score=109.24  Aligned_cols=102  Identities=22%  Similarity=0.329  Sum_probs=67.5

Q ss_pred             CCCCCCCcccccCChhhHHH---hhcCc----------cc-CCCcHHHHHHHHH---cccccc-------------cccc
Q 036857           18 KFEHPATSNTIATDFDMNKA---LVDDY----------WG-PYTGKSSLIAAMA---DLDLKE-------------FQSN   67 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~---l~~~~----------~G-PGtGKT~la~aiA---~~~l~~-------------v~~~   67 (170)
                      ...+|.+++++++++++--.   |...+          || ||||||++|+.||   +..+..             +..+
T Consensus        16 ~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~   95 (436)
T COG2256          16 ERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEE   95 (436)
T ss_pred             HHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHH
Confidence            56789999999998876411   11111          99 9999999999999   222221             1111


Q ss_pred             C--------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeC--CCCCCCCCCCCCCCcc
Q 036857           68 S--------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTT--DYKDHIDPVPLRPSCM  131 (170)
Q Consensus        68 ~--------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tT--N~~~~lD~AllRpgR~  131 (170)
                      +        ..|||+|||..+-.      .....||-.++.      ..+++|+||  |+--.|.+|++.+.|+
T Consensus        96 a~~~~~~gr~tiLflDEIHRfnK------~QQD~lLp~vE~------G~iilIGATTENPsF~ln~ALlSR~~v  157 (436)
T COG2256          96 ARKNRLLGRRTILFLDEIHRFNK------AQQDALLPHVEN------GTIILIGATTENPSFELNPALLSRARV  157 (436)
T ss_pred             HHHHHhcCCceEEEEehhhhcCh------hhhhhhhhhhcC------CeEEEEeccCCCCCeeecHHHhhhhhe
Confidence            1        78999999988743      223445554432      345666655  6777999999974443

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=99.23  E-value=5.2e-11  Score=107.13  Aligned_cols=114  Identities=18%  Similarity=0.191  Sum_probs=84.6

Q ss_pred             cCCCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cccc---------------------
Q 036857           16 SNKFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLDL---------------------   61 (170)
Q Consensus        16 ~~~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~l---------------------   61 (170)
                      .....+|.+|+++++++.+.+.|...+           +| ||||||++|+++| .++.                     
T Consensus        11 la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~   90 (507)
T PRK06645         11 FARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCIS   90 (507)
T ss_pred             hhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHH
Confidence            344789999999999999998876644           69 9999999999999 2211                     


Q ss_pred             ---------cccccc----------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeE
Q 036857           62 ---------KEFQSN----------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRI  110 (170)
Q Consensus        62 ---------~~v~~~----------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~  110 (170)
                               ..+...                      ...|++|||+|.+.      ...++.|+..|+..    +..++
T Consensus        91 i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls------~~a~naLLk~LEep----p~~~v  160 (507)
T PRK06645         91 FNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS------KGAFNALLKTLEEP----PPHII  160 (507)
T ss_pred             HhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC------HHHHHHHHHHHhhc----CCCEE
Confidence                     111000                      05699999998773      34567787777653    45778


Q ss_pred             EEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          111 LVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       111 vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      +|++|+.++.+++++..  |+ ..++|..++.
T Consensus       161 fI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~  189 (507)
T PRK06645        161 FIFATTEVQKIPATIIS--RC-QRYDLRRLSF  189 (507)
T ss_pred             EEEEeCChHHhhHHHHh--cc-eEEEccCCCH
Confidence            88888989999999886  55 5678887776

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=99.22  E-value=9e-12  Score=93.40  Aligned_cols=81  Identities=25%  Similarity=0.297  Sum_probs=50.5

Q ss_pred             cc-CCCcHHHHHHHHH---ccccccccccC----------------------------ceeEeeechhhhccCCccchHH
Q 036857           43 WG-PYTGKSSLIAAMA---DLDLKEFQSNS----------------------------RSILVIEDAVTSFESNAYNSVA   90 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA---~~~l~~v~~~~----------------------------p~il~iDEiD~~~~~~~~~~~~   90 (170)
                      || ||+|||++|+++|   +..+..|+.+.                            ..|+|+|||..      ...++
T Consensus         5 eg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNr------appkt   78 (131)
T PF07726_consen    5 EGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINR------APPKT   78 (131)
T ss_dssp             ES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGG------S-HHH
T ss_pred             ECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeeccccc------CCHHH
Confidence            79 9999999999999   44444443332                            67999999964      45678


Q ss_pred             HHHHHHHhh-------chhccCCCCeEEEEeCCCCC-----CCCCCCCCCCcc
Q 036857           91 LSALLKFVD-------GLWSSSGDGRILVMTTDYKD-----HIDPVPLRPSCM  131 (170)
Q Consensus        91 ~~~ll~~lD-------g~~~~~~~~~~vi~tTN~~~-----~lD~AllRpgR~  131 (170)
                      .+++|+.|.       |.....++..+||+|.|+.+     .|+.|++  +||
T Consensus        79 QsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~--DRF  129 (131)
T PF07726_consen   79 QSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQL--DRF  129 (131)
T ss_dssp             HHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHH--TTS
T ss_pred             HHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHh--ccc
Confidence            889998863       44444567789999999877     6777776  465

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.21  E-value=1e-10  Score=105.29  Aligned_cols=112  Identities=20%  Similarity=0.320  Sum_probs=83.6

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-ccc------------------------
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLD------------------------   60 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~------------------------   60 (170)
                      ....|.+|+++++++.+++.|...+           || ||||||++|+++| .+.                        
T Consensus         6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~   85 (504)
T PRK14963          6 QRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHP   85 (504)
T ss_pred             HhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCC
Confidence            3578999999999999998886655           69 9999999999999 221                        


Q ss_pred             -ccccccc----------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCC
Q 036857           61 -LKEFQSN----------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDY  117 (170)
Q Consensus        61 -l~~v~~~----------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~  117 (170)
                       +..+...                      .+.|++|||+|.+      .....+.|+..++.-    +..+++|++||.
T Consensus        86 dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l------s~~a~naLLk~LEep----~~~t~~Il~t~~  155 (504)
T PRK14963         86 DVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM------SKSAFNALLKTLEEP----PEHVIFILATTE  155 (504)
T ss_pred             ceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECcccc------CHHHHHHHHHHHHhC----CCCEEEEEEcCC
Confidence             1111100                      0679999999865      234567787777664    347788888899


Q ss_pred             CCCCCCCCCCCCccceEEEcCCCCc
Q 036857          118 KDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       118 ~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      ++.+.+++..  |+. +++|..++.
T Consensus       156 ~~kl~~~I~S--Rc~-~~~f~~ls~  177 (504)
T PRK14963        156 PEKMPPTILS--RTQ-HFRFRRLTE  177 (504)
T ss_pred             hhhCChHHhc--ceE-EEEecCCCH
Confidence            9999999986  543 688888777

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=2.6e-11  Score=111.39  Aligned_cols=110  Identities=19%  Similarity=0.211  Sum_probs=78.0

Q ss_pred             cCChhhHHHhhcCc----------------cc-CCCcHHHHHHHHH--------c------cccccccccC---------
Q 036857           29 ATDFDMNKALVDDY----------------WG-PYTGKSSLIAAMA--------D------LDLKEFQSNS---------   68 (170)
Q Consensus        29 ~~~~~~k~~l~~~~----------------~G-PGtGKT~la~aiA--------~------~~l~~v~~~~---------   68 (170)
                      -+..++|+++++.+                +| ||+|||+++|+||        +      .+.++++...         
T Consensus       414 Ygm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPG  493 (906)
T KOG2004|consen  414 YGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPG  493 (906)
T ss_pred             cchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCCh
Confidence            45677888888777                59 9999999999999        1      1233333322         


Q ss_pred             ------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccC-----------CCCeEEEEeCCCCCCCCCCC
Q 036857           69 ------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSS-----------GDGRILVMTTDYKDHIDPVP  125 (170)
Q Consensus        69 ------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~-----------~~~~~vi~tTN~~~~lD~Al  125 (170)
                                  ..+++|||+|.+..  +.+...-++||+.||--..+.           -..|++|+|.|.++.|+++|
T Consensus       494 kiIq~LK~v~t~NPliLiDEvDKlG~--g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pL  571 (906)
T KOG2004|consen  494 KIIQCLKKVKTENPLILIDEVDKLGS--GHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPL  571 (906)
T ss_pred             HHHHHHHhhCCCCceEEeehhhhhCC--CCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhh
Confidence                        77889999999985  445556678888777432210           12689999999999999999


Q ss_pred             CCCCccceEEEcCCCCc
Q 036857          126 LRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       126 lRpgR~d~~i~~~~p~~  142 (170)
                      +  +|+.+.=--+|-.+
T Consensus       572 l--DRMEvIelsGYv~e  586 (906)
T KOG2004|consen  572 L--DRMEVIELSGYVAE  586 (906)
T ss_pred             h--hhhheeeccCccHH
Confidence            9  58876444444333

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.21  E-value=3.4e-11  Score=112.71  Aligned_cols=110  Identities=18%  Similarity=0.271  Sum_probs=73.1

Q ss_pred             cccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH------c------------ccccccc----------
Q 036857           25 SNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA------D------------LDLKEFQ----------   65 (170)
Q Consensus        25 ~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA------~------------~~l~~v~----------   65 (170)
                      ++.+++.+..-+++...+          +| ||||||++|+++|      +            +++..+.          
T Consensus       185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e  264 (758)
T PRK11034        185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFE  264 (758)
T ss_pred             CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHH
Confidence            555655555544444433          79 9999999999999      1            0111110          


Q ss_pred             -----------ccCceeEeeechhhhccCCc--cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC-----CCCCCCCC
Q 036857           66 -----------SNSRSILVIEDAVTSFESNA--YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD-----HIDPVPLR  127 (170)
Q Consensus        66 -----------~~~p~il~iDEiD~~~~~~~--~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~-----~lD~AllR  127 (170)
                                 ...++||||||+|.+++.+.  ..+....   +.+.....  ..++.+|+|||..+     ..|+||.|
T Consensus       265 ~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~---nlLkp~L~--~g~i~vIgATt~~E~~~~~~~D~AL~r  339 (758)
T PRK11034        265 KRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAA---NLIKPLLS--SGKIRVIGSTTYQEFSNIFEKDRALAR  339 (758)
T ss_pred             HHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHH---HHHHHHHh--CCCeEEEecCChHHHHHHhhccHHHHh
Confidence                       01178999999999987432  1222232   23333333  35788999999765     68999999


Q ss_pred             CCccceEEEcCCCCc
Q 036857          128 PSCMDMHFHLSSHTF  142 (170)
Q Consensus       128 pgR~d~~i~~~~p~~  142 (170)
                        ||+ .|+++.|+.
T Consensus       340 --RFq-~I~v~ePs~  351 (758)
T PRK11034        340 --RFQ-KIDITEPSI  351 (758)
T ss_pred             --hCc-EEEeCCCCH
Confidence              996 799999998

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.21  E-value=4.6e-11  Score=107.57  Aligned_cols=113  Identities=19%  Similarity=0.218  Sum_probs=83.3

Q ss_pred             CCCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-ccc-----------------------
Q 036857           17 NKFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLD-----------------------   60 (170)
Q Consensus        17 ~~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~-----------------------   60 (170)
                      ....+|.+|+++++++.+.+.|...+           || ||||||++|+++| .++                       
T Consensus         7 ~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~   86 (509)
T PRK14958          7 ARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGR   86 (509)
T ss_pred             HHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCC
Confidence            34678999999999999999887766           69 9999999999999 111                       


Q ss_pred             ---cccccccC----------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeC
Q 036857           61 ---LKEFQSNS----------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTT  115 (170)
Q Consensus        61 ---l~~v~~~~----------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tT  115 (170)
                         +..+....                      ..|++|||+|.+.      ....+.||..|+..    +..+.+|++|
T Consensus        87 ~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls------~~a~naLLk~LEep----p~~~~fIlat  156 (509)
T PRK14958         87 FPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS------GHSFNALLKTLEEP----PSHVKFILAT  156 (509)
T ss_pred             CceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC------HHHHHHHHHHHhcc----CCCeEEEEEE
Confidence               11121100                      4599999999873      34567888877765    4578788888


Q ss_pred             CCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          116 DYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       116 N~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      +.++.+.+.++.  |+ ..++|..++.
T Consensus       157 td~~kl~~tI~S--Rc-~~~~f~~l~~  180 (509)
T PRK14958        157 TDHHKLPVTVLS--RC-LQFHLAQLPP  180 (509)
T ss_pred             CChHhchHHHHH--Hh-hhhhcCCCCH
Confidence            888888888764  55 5566766555

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=99.20  E-value=1.3e-10  Score=107.14  Aligned_cols=111  Identities=20%  Similarity=0.259  Sum_probs=85.1

Q ss_pred             CCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc--------------------------
Q 036857           19 FEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL--------------------------   59 (170)
Q Consensus        19 ~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~--------------------------   59 (170)
                      +.+|.+|+++++++.+.+.|...+           || ||||||++|+++| .+                          
T Consensus         9 KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~   88 (647)
T PRK07994          9 KWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFV   88 (647)
T ss_pred             HhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCC
Confidence            568899999999999998877655           69 9999999999999 11                          


Q ss_pred             cccccccc--C--------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCC
Q 036857           60 DLKEFQSN--S--------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDY  117 (170)
Q Consensus        60 ~l~~v~~~--~--------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~  117 (170)
                      ++..+...  .                    ..|+||||+|.+      +....+.||..|+.-    ++.+.+|++|+.
T Consensus        89 D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L------s~~a~NALLKtLEEP----p~~v~FIL~Tt~  158 (647)
T PRK07994         89 DLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML------SRHSFNALLKTLEEP----PEHVKFLLATTD  158 (647)
T ss_pred             CceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC------CHHHHHHHHHHHHcC----CCCeEEEEecCC
Confidence            11112111  0                    469999999987      335678888888764    457788888888


Q ss_pred             CCCCCCCCCCCCccceEEEcCCCCc
Q 036857          118 KDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       118 ~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      ++.|.+.++.  |+ ..++|..++.
T Consensus       159 ~~kLl~TI~S--RC-~~~~f~~Ls~  180 (647)
T PRK07994        159 PQKLPVTILS--RC-LQFHLKALDV  180 (647)
T ss_pred             ccccchHHHh--hh-eEeeCCCCCH
Confidence            9999988875  74 8888888877

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.20  E-value=5.4e-11  Score=106.57  Aligned_cols=111  Identities=17%  Similarity=0.203  Sum_probs=83.4

Q ss_pred             CCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc--------------------------
Q 036857           19 FEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL--------------------------   59 (170)
Q Consensus        19 ~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~--------------------------   59 (170)
                      ...|.+|+++++++.+.+.|...+           +| ||||||++|+.+| .+                          
T Consensus         6 KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~   85 (491)
T PRK14964          6 KYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHP   85 (491)
T ss_pred             HhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCC
Confidence            567999999999999999887655           69 9999999999999 11                          


Q ss_pred             ccccccccC----------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCC
Q 036857           60 DLKEFQSNS----------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDY  117 (170)
Q Consensus        60 ~l~~v~~~~----------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~  117 (170)
                      ++..+...+                      ..|++|||+|.+.      ....+.|+..|+.-    +..+.+|++|+.
T Consensus        86 Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls------~~A~NaLLK~LEeP----p~~v~fIlatte  155 (491)
T PRK14964         86 DVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS------NSAFNALLKTLEEP----APHVKFILATTE  155 (491)
T ss_pred             CEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCC------HHHHHHHHHHHhCC----CCCeEEEEEeCC
Confidence            111111110                      5699999998773      34577888888765    457888888888


Q ss_pred             CCCCCCCCCCCCccceEEEcCCCCc
Q 036857          118 KDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       118 ~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      ++.+.+.++.  |+ ..++|..++.
T Consensus       156 ~~Kl~~tI~S--Rc-~~~~f~~l~~  177 (491)
T PRK14964        156 VKKIPVTIIS--RC-QRFDLQKIPT  177 (491)
T ss_pred             hHHHHHHHHH--hh-eeeecccccH
Confidence            9999998875  44 4578877766

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.20  E-value=6.1e-11  Score=109.10  Aligned_cols=112  Identities=18%  Similarity=0.240  Sum_probs=84.2

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc-------------------------
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL-------------------------   59 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~-------------------------   59 (170)
                      .+.+|.+|+++++++.+++.|...+           +| ||||||++|+++| .+                         
T Consensus         7 rKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~h   86 (702)
T PRK14960          7 RKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRF   86 (702)
T ss_pred             HHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCC
Confidence            4678999999999999999887766           69 9999999999999 22                         


Q ss_pred             -cccccccc----------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857           60 -DLKEFQSN----------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD  116 (170)
Q Consensus        60 -~l~~v~~~----------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN  116 (170)
                       ++..+...                      ...|+||||+|.+-      ....+.|+..|+..    +..+.+|++||
T Consensus        87 pDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS------~~A~NALLKtLEEP----P~~v~FILaTt  156 (702)
T PRK14960         87 IDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS------THSFNALLKTLEEP----PEHVKFLFATT  156 (702)
T ss_pred             CceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC------HHHHHHHHHHHhcC----CCCcEEEEEEC
Confidence             11111111                      04699999999773      24567788877764    45778888888


Q ss_pred             CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          117 YKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       117 ~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      .++.+.+.++.  |+ .+++|..++.
T Consensus       157 d~~kIp~TIlS--RC-q~feFkpLs~  179 (702)
T PRK14960        157 DPQKLPITVIS--RC-LQFTLRPLAV  179 (702)
T ss_pred             ChHhhhHHHHH--hh-heeeccCCCH
Confidence            88889888874  65 6788887776

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=99.19  E-value=1.6e-10  Score=97.29  Aligned_cols=113  Identities=19%  Similarity=0.233  Sum_probs=77.8

Q ss_pred             CCCCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-cc------------cccccc-------
Q 036857           17 NKFEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-DL------------DLKEFQ-------   65 (170)
Q Consensus        17 ~~~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~~------------~l~~v~-------   65 (170)
                      .....|.+|+++++++.+++++...+          || ||||||++|+++| .+            +.....       
T Consensus         6 ~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~   85 (337)
T PRK12402          6 TEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYL   85 (337)
T ss_pred             HHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhh
Confidence            44788999999999999999887765          79 9999999999998 11            111100       


Q ss_pred             -------------------------------------ccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCC
Q 036857           66 -------------------------------------SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDG  108 (170)
Q Consensus        66 -------------------------------------~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~  108 (170)
                                                           ...+.+|++||+|.+..      .....|...++..    +..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~------~~~~~L~~~le~~----~~~  155 (337)
T PRK12402         86 VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE------DAQQALRRIMEQY----SRT  155 (337)
T ss_pred             hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH------HHHHHHHHHHHhc----cCC
Confidence                                                 01146999999997732      2234455555544    234


Q ss_pred             eEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          109 RILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       109 ~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      ..+|++||.+..+.+++..  |. ..++|..|+.
T Consensus       156 ~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~  186 (337)
T PRK12402        156 CRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTD  186 (337)
T ss_pred             CeEEEEeCChhhCchhhcC--Cc-eEEEecCCCH
Confidence            5566677777777777775  54 4688888876

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.19  E-value=1.8e-10  Score=99.10  Aligned_cols=112  Identities=19%  Similarity=0.279  Sum_probs=81.7

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc------------cccc--ccc-c--
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL------------DLKE--FQS-N--   67 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~------------~l~~--v~~-~--   67 (170)
                      ...+|.+|+++++++...+.+...+           || ||+|||++|+++| .+            ++..  +.. .  
T Consensus         9 ~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~   88 (367)
T PRK14970          9 RKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNN   88 (367)
T ss_pred             HHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCC
Confidence            4678999999999999998887666           79 9999999999999 11            0000  000 0  


Q ss_pred             -------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCC
Q 036857           68 -------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRP  128 (170)
Q Consensus        68 -------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRp  128 (170)
                                         .+.|+++||+|.+..      ...+.++..++..    +...++|++||..+.+.+++.+.
T Consensus        89 ~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~------~~~~~ll~~le~~----~~~~~~Il~~~~~~kl~~~l~sr  158 (367)
T PRK14970         89 SVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS------AAFNAFLKTLEEP----PAHAIFILATTEKHKIIPTILSR  158 (367)
T ss_pred             CHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH------HHHHHHHHHHhCC----CCceEEEEEeCCcccCCHHHHhc
Confidence                               056999999997632      3467777777653    34667777888889999998863


Q ss_pred             CccceEEEcCCCCc
Q 036857          129 SCMDMHFHLSSHTF  142 (170)
Q Consensus       129 gR~d~~i~~~~p~~  142 (170)
                      ++   .++|..|+.
T Consensus       159 ~~---~v~~~~~~~  169 (367)
T PRK14970        159 CQ---IFDFKRITI  169 (367)
T ss_pred             ce---eEecCCccH
Confidence            43   578888775

>PRK10865 protein disaggregation chaperone; Provisional

Probab=99.19  E-value=4.2e-11  Score=113.55  Aligned_cols=115  Identities=15%  Similarity=0.205  Sum_probs=79.1

Q ss_pred             CCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-c-----------------ccccccc-----
Q 036857           20 EHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-D-----------------LDLKEFQ-----   65 (170)
Q Consensus        20 ~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~-----------------~~l~~v~-----   65 (170)
                      ..|..++.+++.+..-+++...+          || ||||||++|+++| .                 +++..+.     
T Consensus       172 ~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~  251 (857)
T PRK10865        172 AEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKY  251 (857)
T ss_pred             HhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccch
Confidence            44667899999887766666543          79 9999999999999 1                 1111110     


Q ss_pred             ------------c-----cCceeEeeechhhhccCCc-cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC-----CCC
Q 036857           66 ------------S-----NSRSILVIEDAVTSFESNA-YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD-----HID  122 (170)
Q Consensus        66 ------------~-----~~p~il~iDEiD~~~~~~~-~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~-----~lD  122 (170)
                                  .     ..++||||||++.+.+.++ ........+|.   ....  .+.+.+|+||+..+     .+|
T Consensus       252 ~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lk---p~l~--~g~l~~IgaTt~~e~r~~~~~d  326 (857)
T PRK10865        252 RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLK---PALA--RGELHCVGATTLDEYRQYIEKD  326 (857)
T ss_pred             hhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhc---chhh--cCCCeEEEcCCCHHHHHHhhhc
Confidence                        0     1178999999999986332 12222233332   1222  35789999999877     489


Q ss_pred             CCCCCCCccceEEEcCCCCc
Q 036857          123 PVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       123 ~AllRpgR~d~~i~~~~p~~  142 (170)
                      +|+.|  ||+ .|.++.|+.
T Consensus       327 ~al~r--Rf~-~i~v~eP~~  343 (857)
T PRK10865        327 AALER--RFQ-KVFVAEPSV  343 (857)
T ss_pred             HHHHh--hCC-EEEeCCCCH
Confidence            99999  998 588999987

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.19  E-value=9.7e-11  Score=110.55  Aligned_cols=112  Identities=21%  Similarity=0.248  Sum_probs=84.1

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cccc-----------------------
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLDL-----------------------   61 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~l-----------------------   61 (170)
                      ...+|.+|+++++++.+++.|...+           || ||||||++||++| .++.                       
T Consensus         8 eKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~   87 (944)
T PRK14949          8 RKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRF   87 (944)
T ss_pred             HHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCC
Confidence            4678899999999999988876554           69 9999999999999 2211                       


Q ss_pred             ---cccccc--C--------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857           62 ---KEFQSN--S--------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD  116 (170)
Q Consensus        62 ---~~v~~~--~--------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN  116 (170)
                         ..+...  .                    ..|+||||+|.+      .....+.||..|+.-    +..+.+|++|+
T Consensus        88 ~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L------T~eAqNALLKtLEEP----P~~vrFILaTT  157 (944)
T PRK14949         88 VDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML------SRSSFNALLKTLEEP----PEHVKFLLATT  157 (944)
T ss_pred             ceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc------CHHHHHHHHHHHhcc----CCCeEEEEECC
Confidence               111110  0                    469999999987      345678888888764    45777888888


Q ss_pred             CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          117 YKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       117 ~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      .++.|.+.++.  |+ .+++|..++.
T Consensus       158 e~~kLl~TIlS--RC-q~f~fkpLs~  180 (944)
T PRK14949        158 DPQKLPVTVLS--RC-LQFNLKSLTQ  180 (944)
T ss_pred             CchhchHHHHH--hh-eEEeCCCCCH
Confidence            88889888875  55 6788877766

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=99.18  E-value=6.2e-11  Score=100.84  Aligned_cols=92  Identities=20%  Similarity=0.191  Sum_probs=68.1

Q ss_pred             cc-CCCcHHHHHHHHH---ccccccccccC-------------------------------ce---eEeeechhhhccCC
Q 036857           43 WG-PYTGKSSLIAAMA---DLDLKEFQSNS-------------------------------RS---ILVIEDAVTSFESN   84 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA---~~~l~~v~~~~-------------------------------p~---il~iDEiD~~~~~~   84 (170)
                      .| ||||||++|+++|   +.++..++.+.                               ..   |+|+|||+..    
T Consensus        49 ~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra----  124 (329)
T COG0714          49 EGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRA----  124 (329)
T ss_pred             ECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccC----
Confidence            49 9999999999999   22222222211                               33   9999999754    


Q ss_pred             ccchHHHHHHHHHhhc-------hh-ccCCCCeEEEEeCC-----CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857           85 AYNSVALSALLKFVDG-------LW-SSSGDGRILVMTTD-----YKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus        85 ~~~~~~~~~ll~~lDg-------~~-~~~~~~~~vi~tTN-----~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                        ...+.+.|+..|+.       .. ...+...++++|+|     ....+++|+++  ||-+.+.++||+.
T Consensus       125 --~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~  191 (329)
T COG0714         125 --PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDS  191 (329)
T ss_pred             --CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCc
Confidence              45677888888764       22 12245778899999     66688999997  9999999999965

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=99.17  E-value=1.7e-10  Score=104.91  Aligned_cols=112  Identities=21%  Similarity=0.249  Sum_probs=84.1

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc-------------------------
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL-------------------------   59 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~-------------------------   59 (170)
                      ....|.+|+++++++.+.+.+...+           || ||||||++|+.+| .+                         
T Consensus         8 ~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~   87 (559)
T PRK05563          8 RKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSL   87 (559)
T ss_pred             HHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCC
Confidence            3568999999999999998887766           69 9999999999999 11                         


Q ss_pred             -cccccccc----------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857           60 -DLKEFQSN----------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD  116 (170)
Q Consensus        60 -~l~~v~~~----------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN  116 (170)
                       ++..+...                      ...|++|||+|.+.      ....+.|+..++..    +..+++|++|+
T Consensus        88 ~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt------~~a~naLLKtLEep----p~~~ifIlatt  157 (559)
T PRK05563         88 MDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS------TGAFNALLKTLEEP----PAHVIFILATT  157 (559)
T ss_pred             CCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------HHHHHHHHHHhcCC----CCCeEEEEEeC
Confidence             11111110                      05699999999773      34577888877654    45778888888


Q ss_pred             CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          117 YKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       117 ~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      .++.+++.+++  |+. .++|..|+.
T Consensus       158 ~~~ki~~tI~S--Rc~-~~~f~~~~~  180 (559)
T PRK05563        158 EPHKIPATILS--RCQ-RFDFKRISV  180 (559)
T ss_pred             ChhhCcHHHHh--Hhe-EEecCCCCH
Confidence            89999999875  653 577887766

>PRK06893 DNA replication initiation factor; Validated

Probab=99.17  E-value=1.8e-10  Score=93.59  Aligned_cols=120  Identities=15%  Similarity=0.210  Sum_probs=73.4

Q ss_pred             CCCCCCCCcccccCChhhH------HHhhc----C--ccc-CCCcHHHHHHHHH-c-----cccccccc-----------
Q 036857           17 NKFEHPATSNTIATDFDMN------KALVD----D--YWG-PYTGKSSLIAAMA-D-----LDLKEFQS-----------   66 (170)
Q Consensus        17 ~~~~~p~~~~~v~~~~~~k------~~l~~----~--~~G-PGtGKT~la~aiA-~-----~~l~~v~~-----------   66 (170)
                      +....+.+||+.+..+...      +....    .  +|| ||||||++++|+| .     .....+..           
T Consensus         7 ~~~~~~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~~~~~   86 (229)
T PRK06893          7 IHQIDDETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVL   86 (229)
T ss_pred             CCCCCcccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhhHHHH
Confidence            4455666788887544321      11111    0  179 9999999999999 1     11110100           


Q ss_pred             ---cCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC-CCCCCC---CCCCCCCccceEEEcCC
Q 036857           67 ---NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD-YKDHID---PVPLRPSCMDMHFHLSS  139 (170)
Q Consensus        67 ---~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN-~~~~lD---~AllRpgR~d~~i~~~~  139 (170)
                         ....+|++||++.+.+...    ....+.+.++....  .+..++++|+| .|..++   +.+.++.+....++++.
T Consensus        87 ~~~~~~dlLilDDi~~~~~~~~----~~~~l~~l~n~~~~--~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~  160 (229)
T PRK06893         87 ENLEQQDLVCLDDLQAVIGNEE----WELAIFDLFNRIKE--QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLND  160 (229)
T ss_pred             hhcccCCEEEEeChhhhcCChH----HHHHHHHHHHHHHH--cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCC
Confidence               1267999999998865322    22345566666554  23445555555 566554   78887566678999999


Q ss_pred             CCc
Q 036857          140 HTF  142 (170)
Q Consensus       140 p~~  142 (170)
                      |+.
T Consensus       161 pd~  163 (229)
T PRK06893        161 LTD  163 (229)
T ss_pred             CCH
Confidence            998

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.16  E-value=9.5e-11  Score=107.39  Aligned_cols=113  Identities=19%  Similarity=0.201  Sum_probs=84.4

Q ss_pred             CCCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-ccc-----------------------
Q 036857           17 NKFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLD-----------------------   60 (170)
Q Consensus        17 ~~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~-----------------------   60 (170)
                      .....|.+|++|++++.+++.|...+           +| ||||||++|+++| .+.                       
T Consensus         7 a~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~   86 (624)
T PRK14959          7 TARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGM   86 (624)
T ss_pred             HHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCC
Confidence            34678999999999999988877655           69 9999999999999 111                       


Q ss_pred             ---ccccccc----------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeC
Q 036857           61 ---LKEFQSN----------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTT  115 (170)
Q Consensus        61 ---l~~v~~~----------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tT  115 (170)
                         +..+...                      ...||||||+|.+.      ....+.|+..|+.-    ...+++|++|
T Consensus        87 hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt------~~a~naLLk~LEEP----~~~~ifILaT  156 (624)
T PRK14959         87 HVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT------REAFNALLKTLEEP----PARVTFVLAT  156 (624)
T ss_pred             CCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC------HHHHHHHHHHhhcc----CCCEEEEEec
Confidence               1112110                      05699999999873      34567788887764    3578888889


Q ss_pred             CCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          116 DYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       116 N~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      |.++.+.+.++.  |+ .+|+|..++.
T Consensus       157 t~~~kll~TI~S--Rc-q~i~F~pLs~  180 (624)
T PRK14959        157 TEPHKFPVTIVS--RC-QHFTFTRLSE  180 (624)
T ss_pred             CChhhhhHHHHh--hh-hccccCCCCH
Confidence            999999888775  65 3678887766

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=99.16  E-value=1.1e-10  Score=99.04  Aligned_cols=112  Identities=20%  Similarity=0.261  Sum_probs=83.1

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc-------------------------
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL-------------------------   59 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~-------------------------   59 (170)
                      ...+|.+|+++++++..++.+...+           || ||+|||++|+++| .+                         
T Consensus         6 ~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~   85 (355)
T TIGR02397         6 RKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSS   85 (355)
T ss_pred             HHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence            4668899999999999999887655           79 9999999999999 11                         


Q ss_pred             -cccccccc----------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857           60 -DLKEFQSN----------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD  116 (170)
Q Consensus        60 -~l~~v~~~----------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN  116 (170)
                       ++..+...                      ...|+++||+|.+.      ....+.++..++..    +..+++|++||
T Consensus        86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~------~~~~~~Ll~~le~~----~~~~~lIl~~~  155 (355)
T TIGR02397        86 LDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS------KSAFNALLKTLEEP----PEHVVFILATT  155 (355)
T ss_pred             CCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC------HHHHHHHHHHHhCC----ccceeEEEEeC
Confidence             11111100                      04699999998773      24567788877664    45778888889


Q ss_pred             CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          117 YKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       117 ~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      .++.+.+++.+  |+ ..++|+.|+.
T Consensus       156 ~~~~l~~~l~s--r~-~~~~~~~~~~  178 (355)
T TIGR02397       156 EPHKIPATILS--RC-QRFDFKRIPL  178 (355)
T ss_pred             CHHHHHHHHHh--he-eEEEcCCCCH
Confidence            89998898886  65 4788887766

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=99.15  E-value=1.8e-10  Score=108.75  Aligned_cols=112  Identities=20%  Similarity=0.219  Sum_probs=84.5

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-ccc------------------------
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLD------------------------   60 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~------------------------   60 (170)
                      .+..|.+|++|++++.+++.|...+           || ||||||++|+.+| .++                        
T Consensus         7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~   86 (824)
T PRK07764          7 RRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGP   86 (824)
T ss_pred             HHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCC
Confidence            4678999999999999999887666           69 9999999999999 221                        


Q ss_pred             ----cccccc----------------------cCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEe
Q 036857           61 ----LKEFQS----------------------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMT  114 (170)
Q Consensus        61 ----l~~v~~----------------------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~t  114 (170)
                          +..+..                      ....|+||||+|.+.      ....+.||+.|+..    +..+++|++
T Consensus        87 ~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt------~~a~NaLLK~LEEp----P~~~~fIl~  156 (824)
T PRK07764         87 GSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVT------PQGFNALLKIVEEP----PEHLKFIFA  156 (824)
T ss_pred             CCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcC------HHHHHHHHHHHhCC----CCCeEEEEE
Confidence                111111                      005699999999883      35567888888776    457888888


Q ss_pred             CCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          115 TDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       115 TN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      |+.++.|-+.+..  |+ .+++|..++.
T Consensus       157 tt~~~kLl~TIrS--Rc-~~v~F~~l~~  181 (824)
T PRK07764        157 TTEPDKVIGTIRS--RT-HHYPFRLVPP  181 (824)
T ss_pred             eCChhhhhHHHHh--he-eEEEeeCCCH
Confidence            8888888888775  44 5677777655

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=99.14  E-value=1.7e-10  Score=105.35  Aligned_cols=112  Identities=20%  Similarity=0.229  Sum_probs=84.3

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc-------------------------
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL-------------------------   59 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~-------------------------   59 (170)
                      ...+|.+|+++++++.+.+.+...+           +| ||||||++|+++| .+                         
T Consensus         8 ~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h   87 (605)
T PRK05896          8 RKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQS   87 (605)
T ss_pred             HHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCC
Confidence            4678999999999999998887655           69 9999999999999 11                         


Q ss_pred             -ccccccccC----------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857           60 -DLKEFQSNS----------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD  116 (170)
Q Consensus        60 -~l~~v~~~~----------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN  116 (170)
                       ++..+....                      ..|++|||+|.+-.      ...+.|+..|+..    +..+++|++|+
T Consensus        88 ~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~------~A~NaLLKtLEEP----p~~tvfIL~Tt  157 (605)
T PRK05896         88 VDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST------SAWNALLKTLEEP----PKHVVFIFATT  157 (605)
T ss_pred             CceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH------HHHHHHHHHHHhC----CCcEEEEEECC
Confidence             111121100                      45999999997732      3457788887764    45788888888


Q ss_pred             CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          117 YKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       117 ~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      .++.|.+++++  |+. .++|..++.
T Consensus       158 ~~~KLl~TI~S--Rcq-~ieF~~Ls~  180 (605)
T PRK05896        158 EFQKIPLTIIS--RCQ-RYNFKKLNN  180 (605)
T ss_pred             ChHhhhHHHHh--hhh-hcccCCCCH
Confidence            89999999886  553 688888776

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=99.13  E-value=4.9e-10  Score=93.50  Aligned_cols=115  Identities=19%  Similarity=0.179  Sum_probs=81.1

Q ss_pred             ccCCCCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-cc-------ccccc-----------
Q 036857           15 NSNKFEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-DL-------DLKEF-----------   64 (170)
Q Consensus        15 ~~~~~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~~-------~l~~v-----------   64 (170)
                      .+++...|++|+++++.+++.+.+...+          || ||||||+++++++ .+       .+..+           
T Consensus         6 ~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~   85 (319)
T PRK00440          6 IWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVI   85 (319)
T ss_pred             ccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHH
Confidence            3566899999999999999988877655          79 9999999999998 11       11111           


Q ss_pred             ------------cc-cCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCcc
Q 036857           65 ------------QS-NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCM  131 (170)
Q Consensus        65 ------------~~-~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~  131 (170)
                                  .. ..+.+|++||+|.+..      ...+.++..++...    ....+|+++|....+.+++.+  |+
T Consensus        86 ~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~------~~~~~L~~~le~~~----~~~~lIl~~~~~~~l~~~l~s--r~  153 (319)
T PRK00440         86 RNKIKEFARTAPVGGAPFKIIFLDEADNLTS------DAQQALRRTMEMYS----QNTRFILSCNYSSKIIDPIQS--RC  153 (319)
T ss_pred             HHHHHHHHhcCCCCCCCceEEEEeCcccCCH------HHHHHHHHHHhcCC----CCCeEEEEeCCccccchhHHH--Hh
Confidence                        00 1156999999998733      22345666665542    356677788888888777775  55


Q ss_pred             ceEEEcCCCCc
Q 036857          132 DMHFHLSSHTF  142 (170)
Q Consensus       132 d~~i~~~~p~~  142 (170)
                      . .++|+.++.
T Consensus       154 ~-~~~~~~l~~  163 (319)
T PRK00440        154 A-VFRFSPLKK  163 (319)
T ss_pred             h-eeeeCCCCH
Confidence            4 478888776

>PRK13407 bchI magnesium chelatase subunit I; Provisional

Probab=99.13  E-value=2.6e-10  Score=97.85  Aligned_cols=115  Identities=21%  Similarity=0.236  Sum_probs=83.2

Q ss_pred             CCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-cc-------cc----cc-------------
Q 036857           20 EHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-DL-------DL----KE-------------   63 (170)
Q Consensus        20 ~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~~-------~l----~~-------------   63 (170)
                      +.|-+|.++++++..++.+.-.+          +| ||||||++||++| -+       ++    ..             
T Consensus         2 ~~~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~   81 (334)
T PRK13407          2 KKPFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSST   81 (334)
T ss_pred             CCCCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCC
Confidence            46788999999999998765322          59 9999999999998 11       00    00             


Q ss_pred             --------------------ccc----------cC------------ceeEeeechhhhccCCccchHHHHHHHHHhhc-
Q 036857           64 --------------------FQS----------NS------------RSILVIEDAVTSFESNAYNSVALSALLKFVDG-  100 (170)
Q Consensus        64 --------------------v~~----------~~------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg-  100 (170)
                                          +..          ..            ..+||+||++.+      .....+.|++.|+. 
T Consensus        82 ~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl------~~~~q~~Lle~mee~  155 (334)
T PRK13407         82 TMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL------EDHIVDLLLDVAQSG  155 (334)
T ss_pred             cccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC------CHHHHHHHHHHHHcC
Confidence                                100          00            459999999876      34566777777643 


Q ss_pred             --------hhccCCCCeEEEEeCCCCC-CCCCCCCCCCccceEEEcCCCCc
Q 036857          101 --------LWSSSGDGRILVMTTDYKD-HIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       101 --------~~~~~~~~~~vi~tTN~~~-~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                              .....+..+++++|+|..+ .++++++.  ||.+++.+++|..
T Consensus       156 ~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~  204 (334)
T PRK13407        156 ENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRD  204 (334)
T ss_pred             CeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCc
Confidence                    2222345788999999755 68999996  9999999999987

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=99.12  E-value=8.5e-11  Score=104.13  Aligned_cols=102  Identities=13%  Similarity=0.184  Sum_probs=68.0

Q ss_pred             cccccCChhhHHHhhcCc--------cc-CCCcHHHHHHHHH-cc---------ccccc---------------------
Q 036857           25 SNTIATDFDMNKALVDDY--------WG-PYTGKSSLIAAMA-DL---------DLKEF---------------------   64 (170)
Q Consensus        25 ~~~v~~~~~~k~~l~~~~--------~G-PGtGKT~la~aiA-~~---------~l~~v---------------------   64 (170)
                      ++++.++++..+.+...+        +| ||||||++|+++| .+         ....+                     
T Consensus       174 l~d~~i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~  253 (459)
T PRK11331        174 LNDLFIPETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFR  253 (459)
T ss_pred             hhcccCCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeE
Confidence            677788887777776555        79 9999999999998 00         00000                     


Q ss_pred             -------------ccc--CceeEeeechhhhccCCccchHHHHHHHHHhhch------------------hccCCCCeEE
Q 036857           65 -------------QSN--SRSILVIEDAVTSFESNAYNSVALSALLKFVDGL------------------WSSSGDGRIL  111 (170)
Q Consensus        65 -------------~~~--~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~------------------~~~~~~~~~v  111 (170)
                                   ..+  .|++|||||+|.-     .......+++..|+.-                  .-..+.++.+
T Consensus       254 ~~~G~f~~~~~~A~~~p~~~~vliIDEINRa-----ni~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~I  328 (459)
T PRK11331        254 RKDGIFYNFCQQAKEQPEKKYVFIIDEINRA-----NLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYI  328 (459)
T ss_pred             ecCchHHHHHHHHHhcccCCcEEEEehhhcc-----CHHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEE
Confidence                         000  1799999999854     2233334444433310                  0123578999


Q ss_pred             EEeCCCCC----CCCCCCCCCCccce
Q 036857          112 VMTTDYKD----HIDPVPLRPSCMDM  133 (170)
Q Consensus       112 i~tTN~~~----~lD~AllRpgR~d~  133 (170)
                      |+|+|..+    .+|.|++|  ||..
T Consensus       329 IgTMNt~Drs~~~lD~AlrR--RF~f  352 (459)
T PRK11331        329 IGLMNTADRSLAVVDYALRR--RFSF  352 (459)
T ss_pred             EEecCccccchhhccHHHHh--hhhe
Confidence            99999887    89999999  8865

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=99.11  E-value=2e-10  Score=106.21  Aligned_cols=112  Identities=22%  Similarity=0.265  Sum_probs=83.1

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc-------------------------
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL-------------------------   59 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~-------------------------   59 (170)
                      .+.+|.+|+++++++.+++.|...+           +| ||||||++|+++| .+                         
T Consensus         8 rKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~   87 (709)
T PRK08691          8 RKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRY   87 (709)
T ss_pred             HHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCc
Confidence            4678999999999999999887766           69 9999999999999 11                         


Q ss_pred             -ccccccccC----------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857           60 -DLKEFQSNS----------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD  116 (170)
Q Consensus        60 -~l~~v~~~~----------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN  116 (170)
                       ++..+....                      ..|+||||+|.+.      ....+.||..|+..    +..+.+|++||
T Consensus        88 ~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls------~~A~NALLKtLEEP----p~~v~fILaTt  157 (709)
T PRK08691         88 VDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS------KSAFNAMLKTLEEP----PEHVKFILATT  157 (709)
T ss_pred             cceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC------HHHHHHHHHHHHhC----CCCcEEEEEeC
Confidence             111111000                      4699999998762      34567888888764    35778888889


Q ss_pred             CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          117 YKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       117 ~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      .++.+.+.++  +|+ ..+.|..++.
T Consensus       158 d~~kL~~TIr--SRC-~~f~f~~Ls~  180 (709)
T PRK08691        158 DPHKVPVTVL--SRC-LQFVLRNMTA  180 (709)
T ss_pred             CccccchHHH--HHH-hhhhcCCCCH
Confidence            8999988877  476 5566666665

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.10  E-value=4.6e-10  Score=101.80  Aligned_cols=112  Identities=21%  Similarity=0.219  Sum_probs=82.3

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc-------------------------
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL-------------------------   59 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~-------------------------   59 (170)
                      ....|.+|+++++++.+.+.|...+           || ||||||++|+++| .+                         
T Consensus         8 ~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~   87 (546)
T PRK14957          8 RKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSF   87 (546)
T ss_pred             HHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCC
Confidence            4668999999999999988776555           69 9999999999999 11                         


Q ss_pred             -ccccccc-c---------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857           60 -DLKEFQS-N---------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD  116 (170)
Q Consensus        60 -~l~~v~~-~---------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN  116 (170)
                       ++..+.. .                     ...|+||||+|.+.      ....+.||..|+..    ++.+++|++|+
T Consensus        88 ~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls------~~a~naLLK~LEep----p~~v~fIL~Tt  157 (546)
T PRK14957         88 IDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS------KQSFNALLKTLEEP----PEYVKFILATT  157 (546)
T ss_pred             CceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc------HHHHHHHHHHHhcC----CCCceEEEEEC
Confidence             1111111 0                     05699999998773      34567888888764    45676777777


Q ss_pred             CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          117 YKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       117 ~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      .++.+.+.++.  |+ ..++|..++.
T Consensus       158 d~~kil~tI~S--Rc-~~~~f~~Ls~  180 (546)
T PRK14957        158 DYHKIPVTILS--RC-IQLHLKHISQ  180 (546)
T ss_pred             ChhhhhhhHHH--he-eeEEeCCCCH
Confidence            78888888764  55 7788888876

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.10  E-value=3.4e-10  Score=103.36  Aligned_cols=112  Identities=21%  Similarity=0.269  Sum_probs=84.5

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-ccc------------------------
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLD------------------------   60 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~------------------------   60 (170)
                      ...+|.+|+++++++.+++.|...+           +| ||||||++|+++| .++                        
T Consensus         5 ~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~   84 (584)
T PRK14952          5 RKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGP   84 (584)
T ss_pred             HHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccC
Confidence            3578999999999999999877655           69 9999999999999 211                        


Q ss_pred             ----cccccccC----------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEe
Q 036857           61 ----LKEFQSNS----------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMT  114 (170)
Q Consensus        61 ----l~~v~~~~----------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~t  114 (170)
                          +..+....                      ..|++|||+|.+.      ....+.||..|+..    +..+++|++
T Consensus        85 ~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt------~~A~NALLK~LEEp----p~~~~fIL~  154 (584)
T PRK14952         85 GSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT------TAGFNALLKIVEEP----PEHLIFIFA  154 (584)
T ss_pred             CCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC------HHHHHHHHHHHhcC----CCCeEEEEE
Confidence                11111100                      4699999998773      34677888888764    458888888


Q ss_pred             CCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          115 TDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       115 TN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      |+.++.|.++++.  | ..+++|..++.
T Consensus       155 tte~~kll~TI~S--R-c~~~~F~~l~~  179 (584)
T PRK14952        155 TTEPEKVLPTIRS--R-THHYPFRLLPP  179 (584)
T ss_pred             eCChHhhHHHHHH--h-ceEEEeeCCCH
Confidence            8988999999875  5 35788887766

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.09  E-value=2.5e-10  Score=104.18  Aligned_cols=115  Identities=18%  Similarity=0.200  Sum_probs=85.7

Q ss_pred             ccCCCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-ccc---------------------
Q 036857           15 NSNKFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLD---------------------   60 (170)
Q Consensus        15 ~~~~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~---------------------   60 (170)
                      -......|.+|+++++++++++.|...+           || ||||||++|+++| .++                     
T Consensus         5 ~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~   84 (576)
T PRK14965          5 VLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITE   84 (576)
T ss_pred             HHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhc
Confidence            3445678999999999999999887776           69 9999999999999 111                     


Q ss_pred             -----cccccccC----------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEE
Q 036857           61 -----LKEFQSNS----------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVM  113 (170)
Q Consensus        61 -----l~~v~~~~----------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~  113 (170)
                           +..+....                      ..|++|||+|.+.      ....+.|+..|+.-    +..+++|+
T Consensus        85 g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt------~~a~naLLk~LEep----p~~~~fIl  154 (576)
T PRK14965         85 GRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS------TNAFNALLKTLEEP----PPHVKFIF  154 (576)
T ss_pred             CCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC------HHHHHHHHHHHHcC----CCCeEEEE
Confidence                 11111100                      4599999999773      34567888888764    45888888


Q ss_pred             eCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          114 TTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       114 tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      +||.++.|.+.++.  |+ ..++|..++.
T Consensus       155 ~t~~~~kl~~tI~S--Rc-~~~~f~~l~~  180 (576)
T PRK14965        155 ATTEPHKVPITILS--RC-QRFDFRRIPL  180 (576)
T ss_pred             EeCChhhhhHHHHH--hh-hhhhcCCCCH
Confidence            88999999999875  44 4677776665

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=99.09  E-value=9.6e-11  Score=87.16  Aligned_cols=81  Identities=21%  Similarity=0.333  Sum_probs=51.8

Q ss_pred             cc-CCCcHHHHHHHHH---cccccccccc-------------------------------CceeEeeechhhhccCCccc
Q 036857           43 WG-PYTGKSSLIAAMA---DLDLKEFQSN-------------------------------SRSILVIEDAVTSFESNAYN   87 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA---~~~l~~v~~~-------------------------------~p~il~iDEiD~~~~~~~~~   87 (170)
                      +| ||||||++|+.+|   ...+..+..+                               .+++++|||++..      .
T Consensus         5 ~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a------~   78 (139)
T PF07728_consen    5 VGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRA------P   78 (139)
T ss_dssp             EESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--------
T ss_pred             ECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccC------C
Confidence            69 9999999999999   1111111000                               0999999999864      2


Q ss_pred             hHHHHHHHHHhhchhcc---------CCC------CeEEEEeCCCCC----CCCCCCCCCCcc
Q 036857           88 SVALSALLKFVDGLWSS---------SGD------GRILVMTTDYKD----HIDPVPLRPSCM  131 (170)
Q Consensus        88 ~~~~~~ll~~lDg~~~~---------~~~------~~~vi~tTN~~~----~lD~AllRpgR~  131 (170)
                      ...+..+++.+|.-.-.         ...      +..+|+|+|..+    .+++|++|  ||
T Consensus        79 ~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf  139 (139)
T PF07728_consen   79 PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF  139 (139)
T ss_dssp             HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred             HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence            45555555555422110         011      389999999888    99999998  75

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.09  E-value=2.3e-10  Score=103.43  Aligned_cols=112  Identities=19%  Similarity=0.249  Sum_probs=82.5

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-ccc------------------------
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLD------------------------   60 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~------------------------   60 (170)
                      ...+|.+|+++++++.+++.+...+           +| ||||||++|+++| .++                        
T Consensus         8 ~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~   87 (527)
T PRK14969          8 RKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRF   87 (527)
T ss_pred             HHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence            3567899999999999998876655           69 9999999999999 211                        


Q ss_pred             --ccccccc--C--------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857           61 --LKEFQSN--S--------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD  116 (170)
Q Consensus        61 --l~~v~~~--~--------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN  116 (170)
                        +..+...  .                    ..|++|||+|.+.      ....+.||..|+..    ++.+++|++|+
T Consensus        88 ~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls------~~a~naLLK~LEep----p~~~~fIL~t~  157 (527)
T PRK14969         88 VDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS------KSAFNAMLKTLEEP----PEHVKFILATT  157 (527)
T ss_pred             CceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC------HHHHHHHHHHHhCC----CCCEEEEEEeC
Confidence              1111100  0                    4699999999773      34567888888774    45777888888


Q ss_pred             CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          117 YKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       117 ~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      .++.+.+.++.  |+ ..++|..++.
T Consensus       158 d~~kil~tI~S--Rc-~~~~f~~l~~  180 (527)
T PRK14969        158 DPQKIPVTVLS--RC-LQFNLKQMPP  180 (527)
T ss_pred             ChhhCchhHHH--HH-HHHhcCCCCH
Confidence            88888887664  54 6778887776

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=99.09  E-value=2.8e-10  Score=107.95  Aligned_cols=115  Identities=16%  Similarity=0.196  Sum_probs=77.0

Q ss_pred             CCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-c-----------------ccccccc-----
Q 036857           20 EHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-D-----------------LDLKEFQ-----   65 (170)
Q Consensus        20 ~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~-----------------~~l~~v~-----   65 (170)
                      ..|..++.+++.+..-+++...+          || ||||||++|+++| .                 +++..+.     
T Consensus       167 ~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~  246 (852)
T TIGR03346       167 AREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKY  246 (852)
T ss_pred             hhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchh
Confidence            35667888988887766666543          79 9999999999999 1                 1111110     


Q ss_pred             -----------------ccCceeEeeechhhhccCCc-cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC-----CCC
Q 036857           66 -----------------SNSRSILVIEDAVTSFESNA-YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD-----HID  122 (170)
Q Consensus        66 -----------------~~~p~il~iDEiD~~~~~~~-~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~-----~lD  122 (170)
                                       ...++||||||++.+++.+. ........+|.-   ...  ...+.+|++||..+     .+|
T Consensus       247 ~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~---~l~--~g~i~~IgaTt~~e~r~~~~~d  321 (852)
T TIGR03346       247 RGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKP---ALA--RGELHCIGATTLDEYRKYIEKD  321 (852)
T ss_pred             hhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhch---hhh--cCceEEEEeCcHHHHHHHhhcC
Confidence                             01178999999999986322 111222233321   222  35788888888664     589


Q ss_pred             CCCCCCCccceEEEcCCCCc
Q 036857          123 PVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       123 ~AllRpgR~d~~i~~~~p~~  142 (170)
                      +|+.|  ||. .|.++.|+.
T Consensus       322 ~al~r--Rf~-~i~v~~p~~  338 (852)
T TIGR03346       322 AALER--RFQ-PVFVDEPTV  338 (852)
T ss_pred             HHHHh--cCC-EEEeCCCCH
Confidence            99999  996 588999987

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=99.09  E-value=7.2e-10  Score=98.54  Aligned_cols=112  Identities=21%  Similarity=0.205  Sum_probs=83.8

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc-------------------------
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL-------------------------   59 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~-------------------------   59 (170)
                      ....|.+|+++++++.+++.+...+           || ||+|||++|+++| .+                         
T Consensus         9 ~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~   88 (451)
T PRK06305          9 RKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGT   88 (451)
T ss_pred             HHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCC
Confidence            4568899999999999988877666           79 9999999999999 11                         


Q ss_pred             --cccccccc----------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeC
Q 036857           60 --DLKEFQSN----------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTT  115 (170)
Q Consensus        60 --~l~~v~~~----------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tT  115 (170)
                        ++..+...                      ...|++|||+|.+..      ...+.|+..|+..    +..+++|++|
T Consensus        89 ~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~------~~~n~LLk~lEep----~~~~~~Il~t  158 (451)
T PRK06305         89 SLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK------EAFNSLLKTLEEP----PQHVKFFLAT  158 (451)
T ss_pred             CCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH------HHHHHHHHHhhcC----CCCceEEEEe
Confidence              11111110                      167999999998733      3456777777764    3577888888


Q ss_pred             CCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          116 DYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       116 N~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      |.++.|.+++..  |+. .++|..++.
T Consensus       159 ~~~~kl~~tI~s--Rc~-~v~f~~l~~  182 (451)
T PRK06305        159 TEIHKIPGTILS--RCQ-KMHLKRIPE  182 (451)
T ss_pred             CChHhcchHHHH--hce-EEeCCCCCH
Confidence            988999999886  553 688888776

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=99.09  E-value=4.6e-10  Score=95.95  Aligned_cols=68  Identities=7%  Similarity=0.042  Sum_probs=45.6

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhc--------hhcc--CCCCeEEEEeCCCCC------------CCCCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDG--------LWSS--SGDGRILVMTTDYKD------------HIDPVPL  126 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg--------~~~~--~~~~~~vi~tTN~~~------------~lD~All  126 (170)
                      ++++++||+|..-      ..+.+.|...||.        ....  ...+..+|+|+|..+            .++.|++
T Consensus       135 g~illlDEin~a~------p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~l  208 (327)
T TIGR01650       135 NVALCFDEYDAGR------PDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQM  208 (327)
T ss_pred             CeEEEechhhccC------HHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHH
Confidence            7789999999762      2334444444431        1000  112567999999866            4578888


Q ss_pred             CCCccceEEEcCCCCcch
Q 036857          127 RPSCMDMHFHLSSHTFRH  144 (170)
Q Consensus       127 RpgR~d~~i~~~~p~~~~  144 (170)
                        .||-+.+.++||+...
T Consensus       209 --DRF~i~~~~~Yp~~e~  224 (327)
T TIGR01650       209 --DRWSIVTTLNYLEHDN  224 (327)
T ss_pred             --hheeeEeeCCCCCHHH
Confidence              5999999999999933

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.08  E-value=5.2e-10  Score=102.69  Aligned_cols=112  Identities=18%  Similarity=0.242  Sum_probs=83.1

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-ccc------------------------
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLD------------------------   60 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~------------------------   60 (170)
                      .+.+|.+|+++++++.+.+.|...+           || ||||||++|+++| .++                        
T Consensus         8 ~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i   87 (618)
T PRK14951          8 RKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDI   87 (618)
T ss_pred             HHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHH
Confidence            4678999999999999998887766           69 9999999999998 221                        


Q ss_pred             -------cccccccC----------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEE
Q 036857           61 -------LKEFQSNS----------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRIL  111 (170)
Q Consensus        61 -------l~~v~~~~----------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~v  111 (170)
                             +..+....                      ..|++|||+|.+.      ....+.||..|+.-    +..+.+
T Consensus        88 ~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls------~~a~NaLLKtLEEP----P~~~~f  157 (618)
T PRK14951         88 DSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT------NTAFNAMLKTLEEP----PEYLKF  157 (618)
T ss_pred             HcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC------HHHHHHHHHhcccC----CCCeEE
Confidence                   11111100                      3599999999873      34567788777664    457777


Q ss_pred             EEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          112 VMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       112 i~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      |++|+.++.+.+.++.  |+ ..++|..++.
T Consensus       158 IL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~  185 (618)
T PRK14951        158 VLATTDPQKVPVTVLS--RC-LQFNLRPMAP  185 (618)
T ss_pred             EEEECCchhhhHHHHH--hc-eeeecCCCCH
Confidence            8888888888888765  55 7788877766

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=99.08  E-value=3.5e-10  Score=105.10  Aligned_cols=115  Identities=21%  Similarity=0.212  Sum_probs=87.0

Q ss_pred             ccCCCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cccc--------------------
Q 036857           15 NSNKFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLDL--------------------   61 (170)
Q Consensus        15 ~~~~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~l--------------------   61 (170)
                      .+....+|.+|+++++++.+.+.|...+           || ||||||++|+++| .+..                    
T Consensus         7 ~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~   86 (725)
T PRK07133          7 ALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNS   86 (725)
T ss_pred             hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCC
Confidence            3445789999999999999988887766           69 9999999999999 1111                    


Q ss_pred             ---ccccc----------------------cCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857           62 ---KEFQS----------------------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD  116 (170)
Q Consensus        62 ---~~v~~----------------------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN  116 (170)
                         ..+..                      ....|++|||+|.+..      ...+.||..|+..    +..+++|++|+
T Consensus        87 ~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~------~A~NALLKtLEEP----P~~tifILaTt  156 (725)
T PRK07133         87 LDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK------SAFNALLKTLEEP----PKHVIFILATT  156 (725)
T ss_pred             CcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH------HHHHHHHHHhhcC----CCceEEEEEcC
Confidence               00110                      0056999999997732      4577888888764    45788888888


Q ss_pred             CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          117 YKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       117 ~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      .++.|.+.++.  |+ .+++|..++.
T Consensus       157 e~~KLl~TI~S--Rc-q~ieF~~L~~  179 (725)
T PRK07133        157 EVHKIPLTILS--RV-QRFNFRRISE  179 (725)
T ss_pred             ChhhhhHHHHh--hc-eeEEccCCCH
Confidence            99999999886  66 4788988877

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=99.07  E-value=2.4e-10  Score=100.00  Aligned_cols=106  Identities=24%  Similarity=0.231  Sum_probs=75.5

Q ss_pred             CcccccCChhhHHHhhcCc--------------------cc-CCCcHHHHHHHHH-ccc---------------------
Q 036857           24 TSNTIATDFDMNKALVDDY--------------------WG-PYTGKSSLIAAMA-DLD---------------------   60 (170)
Q Consensus        24 ~~~~v~~~~~~k~~l~~~~--------------------~G-PGtGKT~la~aiA-~~~---------------------   60 (170)
                      .|++|++++.+++.|...+                    || ||+|||++|+++| .+.                     
T Consensus         3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~   82 (394)
T PRK07940          3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG   82 (394)
T ss_pred             hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence            4788999888877554322                    69 9999999999999 111                     


Q ss_pred             ----ccccccc--C---------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEE
Q 036857           61 ----LKEFQSN--S---------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVM  113 (170)
Q Consensus        61 ----l~~v~~~--~---------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~  113 (170)
                          +..+..+  .                     ..|+||||+|.+..      ...+.||..|+.-    +.++++|+
T Consensus        83 ~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~------~aanaLLk~LEep----~~~~~fIL  152 (394)
T PRK07940         83 THPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE------RAANALLKAVEEP----PPRTVWLL  152 (394)
T ss_pred             CCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH------HHHHHHHHHhhcC----CCCCeEEE
Confidence                1011110  0                     45999999998833      3457788888653    34666666


Q ss_pred             eCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          114 TTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       114 tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      +|+.++.|.|++++  |+ ..++|+.|+.
T Consensus       153 ~a~~~~~llpTIrS--Rc-~~i~f~~~~~  178 (394)
T PRK07940        153 CAPSPEDVLPTIRS--RC-RHVALRTPSV  178 (394)
T ss_pred             EECChHHChHHHHh--hC-eEEECCCCCH
Confidence            67779999999987  55 5899999987

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=99.06  E-value=2.5e-10  Score=107.37  Aligned_cols=109  Identities=20%  Similarity=0.192  Sum_probs=75.1

Q ss_pred             ccCChhhHHHhhcCc----------------cc-CCCcHHHHHHHHH---c-----cccccccc----------------
Q 036857           28 IATDFDMNKALVDDY----------------WG-PYTGKSSLIAAMA---D-----LDLKEFQS----------------   66 (170)
Q Consensus        28 v~~~~~~k~~l~~~~----------------~G-PGtGKT~la~aiA---~-----~~l~~v~~----------------   66 (170)
                      ..+.+.+|+++...+                +| ||||||++++++|   .     +.+..+..                
T Consensus       324 ~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~  403 (784)
T PRK10787        324 HYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMP  403 (784)
T ss_pred             ccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCC
Confidence            677888888887544                69 9999999999999   1     11111100                


Q ss_pred             -----------cCceeEeeechhhhccCCccchHHHHHHHHHhhchh----c-------cCCCCeEEEEeCCCCCCCCCC
Q 036857           67 -----------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLW----S-------SSGDGRILVMTTDYKDHIDPV  124 (170)
Q Consensus        67 -----------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~----~-------~~~~~~~vi~tTN~~~~lD~A  124 (170)
                                 ....|+|+||+|.+....  .....+.|++.+|.-.    .       ..-.++++|+|||..+ |++|
T Consensus       404 G~~~~~l~~~~~~~~villDEidk~~~~~--~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~-i~~a  480 (784)
T PRK10787        404 GKLIQKMAKVGVKNPLFLLDEIDKMSSDM--RGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMN-IPAP  480 (784)
T ss_pred             cHHHHHHHhcCCCCCEEEEEChhhccccc--CCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCC-CCHH
Confidence                       014589999999997632  2345678888887411    0       0015789999999884 9999


Q ss_pred             CCCCCccceEEEcCCCCc
Q 036857          125 PLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       125 llRpgR~d~~i~~~~p~~  142 (170)
                      |+.  |++. |.|..++.
T Consensus       481 Ll~--R~~i-i~~~~~t~  495 (784)
T PRK10787        481 LLD--RMEV-IRLSGYTE  495 (784)
T ss_pred             Hhc--ceee-eecCCCCH
Confidence            995  9974 66666555

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=99.06  E-value=7.4e-10  Score=100.86  Aligned_cols=112  Identities=19%  Similarity=0.201  Sum_probs=83.6

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc-------------------------
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL-------------------------   59 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~-------------------------   59 (170)
                      ...+|.+|+++++++.+++.|...+           || ||+|||++|+++| .+                         
T Consensus         8 ~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~   87 (563)
T PRK06647          8 TKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNS   87 (563)
T ss_pred             HHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCC
Confidence            3568999999999999998887766           69 9999999999999 11                         


Q ss_pred             -cccccccc----------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857           60 -DLKEFQSN----------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD  116 (170)
Q Consensus        60 -~l~~v~~~----------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN  116 (170)
                       ++..+...                      ...|++|||+|.+.      ....+.|+..++..    +..+++|++|+
T Consensus        88 ~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls------~~a~naLLK~LEep----p~~~vfI~~tt  157 (563)
T PRK06647         88 LDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS------NSAFNALLKTIEEP----PPYIVFIFATT  157 (563)
T ss_pred             CCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC------HHHHHHHHHhhccC----CCCEEEEEecC
Confidence             11111111                      05699999998772      34567788877753    45788888888


Q ss_pred             CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          117 YKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       117 ~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      .++.+.+++..  |+. .++|..++.
T Consensus       158 e~~kL~~tI~S--Rc~-~~~f~~l~~  180 (563)
T PRK06647        158 EVHKLPATIKS--RCQ-HFNFRLLSL  180 (563)
T ss_pred             ChHHhHHHHHH--hce-EEEecCCCH
Confidence            88999999875  554 577877766

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=99.06  E-value=7.2e-10  Score=103.49  Aligned_cols=112  Identities=21%  Similarity=0.245  Sum_probs=72.0

Q ss_pred             cCCCCCCCCcccccCChhhHH---HhhcCc----------cc-CCCcHHHHHHHHH---ccc----------ccccc---
Q 036857           16 SNKFEHPATSNTIATDFDMNK---ALVDDY----------WG-PYTGKSSLIAAMA---DLD----------LKEFQ---   65 (170)
Q Consensus        16 ~~~~~~p~~~~~v~~~~~~k~---~l~~~~----------~G-PGtGKT~la~aiA---~~~----------l~~v~---   65 (170)
                      .....+|.+|+++++++....   .+...+          || ||||||++|+++|   ...          +..+.   
T Consensus        18 Laek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~i~dir~~i   97 (725)
T PRK13341         18 LADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRAEV   97 (725)
T ss_pred             hHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhhhHHHHHHH
Confidence            345678999999999988653   232222          89 9999999999999   111          10100   


Q ss_pred             ---------ccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeC--CCCCCCCCCCCCCCccceE
Q 036857           66 ---------SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTT--DYKDHIDPVPLRPSCMDMH  134 (170)
Q Consensus        66 ---------~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tT--N~~~~lD~AllRpgR~d~~  134 (170)
                               .....+|||||+|.+..      .....|+..++.      ..+++|++|  |....++++++.++   ..
T Consensus        98 ~~a~~~l~~~~~~~IL~IDEIh~Ln~------~qQdaLL~~lE~------g~IiLI~aTTenp~~~l~~aL~SR~---~v  162 (725)
T PRK13341         98 DRAKERLERHGKRTILFIDEVHRFNK------AQQDALLPWVEN------GTITLIGATTENPYFEVNKALVSRS---RL  162 (725)
T ss_pred             HHHHHHhhhcCCceEEEEeChhhCCH------HHHHHHHHHhcC------ceEEEEEecCCChHhhhhhHhhccc---cc
Confidence                     01256999999998743      223455554432      245555544  45567999998634   35


Q ss_pred             EEcCCCCc
Q 036857          135 FHLSSHTF  142 (170)
Q Consensus       135 i~~~~p~~  142 (170)
                      ++|+.++.
T Consensus       163 ~~l~pLs~  170 (725)
T PRK13341        163 FRLKSLSD  170 (725)
T ss_pred             eecCCCCH
Confidence            78888776

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=99.04  E-value=1.3e-09  Score=91.48  Aligned_cols=115  Identities=16%  Similarity=0.135  Sum_probs=82.4

Q ss_pred             CCCCCCcccccCChhhHHHhhcCc---------------cc-CCCcHHHHHHHHH---ccccccccccC-----------
Q 036857           19 FEHPATSNTIATDFDMNKALVDDY---------------WG-PYTGKSSLIAAMA---DLDLKEFQSNS-----------   68 (170)
Q Consensus        19 ~~~p~~~~~v~~~~~~k~~l~~~~---------------~G-PGtGKT~la~aiA---~~~l~~v~~~~-----------   68 (170)
                      ..+|..|++-++++.+|+++.-.+               || ||.|||+||..||   ..++.......           
T Consensus        19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDlaaiL   98 (332)
T COG2255          19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLAAIL   98 (332)
T ss_pred             ccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHHHHH
Confidence            567999999999999999886544               79 9999999999999   33433332221           


Q ss_pred             -----ceeEeeechhhhccCCccchHHHHHH-HHHhhc-----hhccCC---------CCeEEEEeCCCCCCCCCCCCCC
Q 036857           69 -----RSILVIEDAVTSFESNAYNSVALSAL-LKFVDG-----LWSSSG---------DGRILVMTTDYKDHIDPVPLRP  128 (170)
Q Consensus        69 -----p~il~iDEiD~~~~~~~~~~~~~~~l-l~~lDg-----~~~~~~---------~~~~vi~tTN~~~~lD~AllRp  128 (170)
                           ..|+|+|||..+.+       .+.++ -.+|+.     +....+         ...-+|+||-+...|-.-|.  
T Consensus        99 t~Le~~DVLFIDEIHrl~~-------~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLr--  169 (332)
T COG2255          99 TNLEEGDVLFIDEIHRLSP-------AVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLR--  169 (332)
T ss_pred             hcCCcCCeEEEehhhhcCh-------hHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhH--
Confidence                 88999999988754       12222 233331     111100         14568999999999988887  


Q ss_pred             CccceEEEcCCCCc
Q 036857          129 SCMDMHFHLSSHTF  142 (170)
Q Consensus       129 gR~d~~i~~~~p~~  142 (170)
                      .||....++.+-+.
T Consensus       170 dRFGi~~rlefY~~  183 (332)
T COG2255         170 DRFGIIQRLEFYTV  183 (332)
T ss_pred             HhcCCeeeeecCCH
Confidence            69998888887666

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.04  E-value=5.9e-10  Score=97.37  Aligned_cols=112  Identities=16%  Similarity=0.232  Sum_probs=79.6

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cccc-----------------------
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLDL-----------------------   61 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~l-----------------------   61 (170)
                      ....|.+|+++++++.+++.|...+           || ||||||++|+++| .+..                       
T Consensus         8 ~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c   87 (397)
T PRK14955          8 RKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESC   87 (397)
T ss_pred             HhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHH
Confidence            4678999999999999998887665           79 9999999999999 2211                       


Q ss_pred             -----------ccccccC----------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCC
Q 036857           62 -----------KEFQSNS----------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDG  108 (170)
Q Consensus        62 -----------~~v~~~~----------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~  108 (170)
                                 ..+....                      ..|+|+||+|.+..      ...+.|+..++..    +..
T Consensus        88 ~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~------~~~~~LLk~LEep----~~~  157 (397)
T PRK14955         88 RDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI------AAFNAFLKTLEEP----PPH  157 (397)
T ss_pred             HHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH------HHHHHHHHHHhcC----CCC
Confidence                       1111100                      56999999987732      3456677777643    346


Q ss_pred             eEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          109 RILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       109 ~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      .++|++|+.++.+-+++.+  |.. .++|..++.
T Consensus       158 t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~  188 (397)
T PRK14955        158 AIFIFATTELHKIPATIAS--RCQ-RFNFKRIPL  188 (397)
T ss_pred             eEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCH
Confidence            6677777777888888775  443 577777765

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=99.03  E-value=4.8e-10  Score=92.79  Aligned_cols=65  Identities=11%  Similarity=0.076  Sum_probs=46.3

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchh----cc--------CCCCeEEEEeCCCC-----CCCCCCCCCCCcc
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLW----SS--------SGDGRILVMTTDYK-----DHIDPVPLRPSCM  131 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~----~~--------~~~~~~vi~tTN~~-----~~lD~AllRpgR~  131 (170)
                      +.++++||+|..      .....+.|+..|+.-.    ..        ...+..+|+|+|..     ..+++|+++  ||
T Consensus       106 g~~lllDEi~r~------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~--R~  177 (262)
T TIGR02640       106 GFTLVYDEFTRS------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD--RL  177 (262)
T ss_pred             CCEEEEcchhhC------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh--hc
Confidence            479999999975      2345666777765321    00        01256799999975     367999997  87


Q ss_pred             ceEEEcCCCCc
Q 036857          132 DMHFHLSSHTF  142 (170)
Q Consensus       132 d~~i~~~~p~~  142 (170)
                       ..+++++|+.
T Consensus       178 -~~i~i~~P~~  187 (262)
T TIGR02640       178 -ITIFMDYPDI  187 (262)
T ss_pred             -EEEECCCCCH
Confidence             7899999998

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>CHL00095 clpC Clp protease ATP binding subunit

Probab=99.03  E-value=6.1e-10  Score=105.29  Aligned_cols=111  Identities=18%  Similarity=0.229  Sum_probs=74.2

Q ss_pred             CcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH------------------cccccccc---------
Q 036857           24 TSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA------------------DLDLKEFQ---------   65 (170)
Q Consensus        24 ~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA------------------~~~l~~v~---------   65 (170)
                      .++.+++.+..-+++...+          +| ||||||++|+++|                  .+++..+.         
T Consensus       177 ~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~  256 (821)
T CHL00095        177 NLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEF  256 (821)
T ss_pred             CCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHH
Confidence            4677787777777776655          79 9999999999999                  11111111         


Q ss_pred             ------------ccCceeEeeechhhhccCCc-cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC-----CCCCCCCC
Q 036857           66 ------------SNSRSILVIEDAVTSFESNA-YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD-----HIDPVPLR  127 (170)
Q Consensus        66 ------------~~~p~il~iDEiD~~~~~~~-~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~-----~lD~AllR  127 (170)
                                  ...++||||||++.+++.+. ......+.+|.   ....  .+.+.+|++|+..+     ..|+++.|
T Consensus       257 e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLk---p~l~--rg~l~~IgaTt~~ey~~~ie~D~aL~r  331 (821)
T CHL00095        257 EERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILK---PALA--RGELQCIGATTLDEYRKHIEKDPALER  331 (821)
T ss_pred             HHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhH---HHHh--CCCcEEEEeCCHHHHHHHHhcCHHHHh
Confidence                        01178999999999987332 11222333333   1111  35778888888654     58999998


Q ss_pred             CCccceEEEcCCCCc
Q 036857          128 PSCMDMHFHLSSHTF  142 (170)
Q Consensus       128 pgR~d~~i~~~~p~~  142 (170)
                        ||.. |.+..|+.
T Consensus       332 --Rf~~-I~v~ep~~  343 (821)
T CHL00095        332 --RFQP-VYVGEPSV  343 (821)
T ss_pred             --cceE-EecCCCCH
Confidence              9975 78888887

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=99.03  E-value=1.9e-09  Score=97.59  Aligned_cols=112  Identities=20%  Similarity=0.195  Sum_probs=84.0

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc-------------------------
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL-------------------------   59 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~-------------------------   59 (170)
                      ...+|.+|+++++++.+++.|...+           || ||+|||++|+++| .+                         
T Consensus         6 ~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h   85 (535)
T PRK08451          6 LKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRH   85 (535)
T ss_pred             HHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCC
Confidence            3678999999999999998887665           69 9999999999999 11                         


Q ss_pred             -cccccccc-----------------C-----ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857           60 -DLKEFQSN-----------------S-----RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD  116 (170)
Q Consensus        60 -~l~~v~~~-----------------~-----p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN  116 (170)
                       ++..+...                 .     ..|++|||+|.+      .....+.||..|+..    +..+.+|++|+
T Consensus        86 ~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~L------t~~A~NALLK~LEEp----p~~t~FIL~tt  155 (535)
T PRK08451         86 IDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHML------TKEAFNALLKTLEEP----PSYVKFILATT  155 (535)
T ss_pred             CeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccC------CHHHHHHHHHHHhhc----CCceEEEEEEC
Confidence             11111100                 0     459999999877      335567888887765    34677777778


Q ss_pred             CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          117 YKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       117 ~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      .+..|.+++..  |. .+++|..++.
T Consensus       156 d~~kL~~tI~S--Rc-~~~~F~~Ls~  178 (535)
T PRK08451        156 DPLKLPATILS--RT-QHFRFKQIPQ  178 (535)
T ss_pred             ChhhCchHHHh--hc-eeEEcCCCCH
Confidence            88999999886  63 5889988876

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=99.03  E-value=1.6e-09  Score=98.09  Aligned_cols=116  Identities=18%  Similarity=0.207  Sum_probs=76.9

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHHc-------------cccccccc-------
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMAD-------------LDLKEFQS-------   66 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA~-------------~~l~~v~~-------   66 (170)
                      ...+|.+|+++++.....+.+...+          || ||||||++||+++.             ..+..+..       
T Consensus        57 ~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~  136 (531)
T TIGR02902        57 EKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDE  136 (531)
T ss_pred             HhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCc
Confidence            4678899999999998887776544          79 99999999999951             00111100       


Q ss_pred             -------------------------------------cCceeEeeechhhhccCCccchHHHHHHHHHhhchh-------
Q 036857           67 -------------------------------------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLW-------  102 (170)
Q Consensus        67 -------------------------------------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~-------  102 (170)
                                                           ....+|||||+|.+-.      ...+.|+..|+.-.       
T Consensus       137 ~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~------~~q~~LL~~Le~~~~~~~~~~  210 (531)
T TIGR02902       137 RGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHP------VQMNKLLKVLEDRKVFLDSAY  210 (531)
T ss_pred             cccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCH------HHHHHHHHHHHhCeeeecccc
Confidence                                                 0036999999998743      34555665553210       


Q ss_pred             -----------------ccCCCC-eEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          103 -----------------SSSGDG-RILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       103 -----------------~~~~~~-~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                                       ...+.+ +++++|||.++.++||+++  |+. .|.|+.++.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~  265 (531)
T TIGR02902       211 YNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLD  265 (531)
T ss_pred             ccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCH
Confidence                             000122 4566777899999999997  764 667766654

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=99.01  E-value=3e-09  Score=85.49  Aligned_cols=137  Identities=12%  Similarity=0.162  Sum_probs=75.7

Q ss_pred             CCCCCCCCcccccC--ChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH------ccccccccc----------
Q 036857           17 NKFEHPATSNTIAT--DFDMNKALVDDY-----------WG-PYTGKSSLIAAMA------DLDLKEFQS----------   66 (170)
Q Consensus        17 ~~~~~p~~~~~v~~--~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA------~~~l~~v~~----------   66 (170)
                      .+...|.+|++.+.  +......+....           || ||||||++|++++      +..+..+..          
T Consensus         9 ~~~~~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~~~~   88 (227)
T PRK08903          9 LGPPPPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAFDFD   88 (227)
T ss_pred             CCCCChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHHhhc
Confidence            44556667888762  233333333221           69 9999999999999      111111111          


Q ss_pred             cCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC---CCCCCCCCCCcc--ceEEEcCCCC
Q 036857           67 NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD---HIDPVPLRPSCM--DMHFHLSSHT  141 (170)
Q Consensus        67 ~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~---~lD~AllRpgR~--d~~i~~~~p~  141 (170)
                      ....+|++||+|.+..      .....+...++....  ....++++|++.+.   .+.+.+..  |+  ...++++.|+
T Consensus        89 ~~~~~liiDdi~~l~~------~~~~~L~~~~~~~~~--~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~  158 (227)
T PRK08903         89 PEAELYAVDDVERLDD------AQQIALFNLFNRVRA--HGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLS  158 (227)
T ss_pred             ccCCEEEEeChhhcCc------hHHHHHHHHHHHHHH--cCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCC
Confidence            1267999999997632      123445555655543  22334556665332   23344442  66  5799999999


Q ss_pred             cchHHHHHHHHHhh--cCCCCHHHH
Q 036857          142 FRHYLFEKIEERLA--KIQATPAEV  164 (170)
Q Consensus       142 ~~~~l~~~~~~~~~--~~~~s~a~i  164 (170)
                      .+. ....+.+...  ...++++.+
T Consensus       159 ~~~-~~~~l~~~~~~~~v~l~~~al  182 (227)
T PRK08903        159 DAD-KIAALKAAAAERGLQLADEVP  182 (227)
T ss_pred             HHH-HHHHHHHHHHHcCCCCCHHHH
Confidence            842 3333433332  234555433

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=99.01  E-value=1.8e-09  Score=98.94  Aligned_cols=114  Identities=18%  Similarity=0.218  Sum_probs=84.6

Q ss_pred             cCCCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-ccccc--------------------
Q 036857           16 SNKFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLDLK--------------------   62 (170)
Q Consensus        16 ~~~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~l~--------------------   62 (170)
                      ......|.+|+++++++.+++.|...+           +| ||+|||++|+++| .++..                    
T Consensus        14 la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~   93 (598)
T PRK09111         14 LARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQ   93 (598)
T ss_pred             HHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHH
Confidence            335678999999999999999887765           69 9999999999999 22110                    


Q ss_pred             -----------ccccc----------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCe
Q 036857           63 -----------EFQSN----------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGR  109 (170)
Q Consensus        63 -----------~v~~~----------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~  109 (170)
                                 .+...                      ...|++|||+|.+.      ....+.|+..|+..    +..+
T Consensus        94 ~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls------~~a~naLLKtLEeP----p~~~  163 (598)
T PRK09111         94 AIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS------TAAFNALLKTLEEP----PPHV  163 (598)
T ss_pred             HHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC------HHHHHHHHHHHHhC----CCCe
Confidence                       00000                      05699999998773      34567788777664    4577


Q ss_pred             EEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          110 ILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       110 ~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      ++|++|+.++.+.+.+..  |+ ..++|..++.
T Consensus       164 ~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~  193 (598)
T PRK09111        164 KFIFATTEIRKVPVTVLS--RC-QRFDLRRIEA  193 (598)
T ss_pred             EEEEEeCChhhhhHHHHh--he-eEEEecCCCH
Confidence            888888888888888764  55 5788888876

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=99.01  E-value=1.6e-09  Score=78.41  Aligned_cols=88  Identities=22%  Similarity=0.299  Sum_probs=58.2

Q ss_pred             cc-CCCcHHHHHHHHH-cc---c-------cc----------------------cccccCceeEeeechhhhccCCccch
Q 036857           43 WG-PYTGKSSLIAAMA-DL---D-------LK----------------------EFQSNSRSILVIEDAVTSFESNAYNS   88 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~---~-------l~----------------------~v~~~~p~il~iDEiD~~~~~~~~~~   88 (170)
                      +| ||||||++++.++ ..   +       ..                      ......+.++++||++.+..      
T Consensus        25 ~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~------   98 (151)
T cd00009          25 YGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR------   98 (151)
T ss_pred             ECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH------
Confidence            79 9999999999999 11   0       00                      00111289999999987621      


Q ss_pred             HHHHHHHHHhhchhcc--CCCCeEEEEeCCCCC--CCCCCCCCCCccceEEEcC
Q 036857           89 VALSALLKFVDGLWSS--SGDGRILVMTTDYKD--HIDPVPLRPSCMDMHFHLS  138 (170)
Q Consensus        89 ~~~~~ll~~lDg~~~~--~~~~~~vi~tTN~~~--~lD~AllRpgR~d~~i~~~  138 (170)
                      .....++..+......  ...++.+|++||...  .+++.+..  |++.+++++
T Consensus        99 ~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~  150 (151)
T cd00009          99 GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP  150 (151)
T ss_pred             HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence            2234455555444321  025788899999877  67777774  999888876

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.00  E-value=1.6e-09  Score=97.18  Aligned_cols=112  Identities=23%  Similarity=0.248  Sum_probs=81.3

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-ccc------------------------
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLD------------------------   60 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~------------------------   60 (170)
                      ...+|.+|+++++++.+.+.+...+           || ||+|||++|+.+| .++                        
T Consensus         8 ~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~   87 (486)
T PRK14953          8 RKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSF   87 (486)
T ss_pred             HhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCC
Confidence            3678999999999999988876666           69 9999999999999 221                        


Q ss_pred             --cccccc---c-------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857           61 --LKEFQS---N-------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD  116 (170)
Q Consensus        61 --l~~v~~---~-------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN  116 (170)
                        +..+..   .                   ...|+++||+|.+.      ....+.|+..++..    +..+++|++|+
T Consensus        88 ~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt------~~a~naLLk~LEep----p~~~v~Il~tt  157 (486)
T PRK14953         88 PDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT------KEAFNALLKTLEEP----PPRTIFILCTT  157 (486)
T ss_pred             CcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC------HHHHHHHHHHHhcC----CCCeEEEEEEC
Confidence              111100   0                   05799999999773      23457777777654    34667777778


Q ss_pred             CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          117 YKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       117 ~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      .++.+++++.+  |+ ..+.|..++.
T Consensus       158 ~~~kl~~tI~S--Rc-~~i~f~~ls~  180 (486)
T PRK14953        158 EYDKIPPTILS--RC-QRFIFSKPTK  180 (486)
T ss_pred             CHHHHHHHHHH--hc-eEEEcCCCCH
Confidence            88889888876  54 3688887766

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=98.99  E-value=8.3e-11  Score=101.78  Aligned_cols=103  Identities=19%  Similarity=0.272  Sum_probs=64.7

Q ss_pred             CCCCCCCcccccCChhhHHH---hhcCc----------cc-CCCcHHHHHHHHH------c---cccc----------cc
Q 036857           18 KFEHPATSNTIATDFDMNKA---LVDDY----------WG-PYTGKSSLIAAMA------D---LDLK----------EF   64 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~---l~~~~----------~G-PGtGKT~la~aiA------~---~~l~----------~v   64 (170)
                      +..+|.++++.+++.++-.+   |...+          || ||||||++||.||      .   +.++          .+
T Consensus       130 ermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~i  209 (554)
T KOG2028|consen  130 ERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDI  209 (554)
T ss_pred             hhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHH
Confidence            56678888888887765322   11111          99 9999999999999      1   1111          12


Q ss_pred             cccC---------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeC--CCCCCCCCCCCCCCccc
Q 036857           65 QSNS---------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTT--DYKDHIDPVPLRPSCMD  132 (170)
Q Consensus        65 ~~~~---------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tT--N~~~~lD~AllRpgR~d  132 (170)
                      +.++         ..|||||||..+-.      .....||-.++      ...+.+|.+|  |.--.|..||+.++|+-
T Consensus       210 fe~aq~~~~l~krkTilFiDEiHRFNk------sQQD~fLP~VE------~G~I~lIGATTENPSFqln~aLlSRC~Vf  276 (554)
T KOG2028|consen  210 FEQAQNEKSLTKRKTILFIDEIHRFNK------SQQDTFLPHVE------NGDITLIGATTENPSFQLNAALLSRCRVF  276 (554)
T ss_pred             HHHHHHHHhhhcceeEEEeHHhhhhhh------hhhhcccceec------cCceEEEecccCCCccchhHHHHhcccee
Confidence            1111         89999999988743      11222333221      2356666655  56679999999766653

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=98.99  E-value=2.2e-09  Score=92.22  Aligned_cols=66  Identities=18%  Similarity=0.241  Sum_probs=49.8

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhh---------chhccCCCCeEEEEeCCCCC-CCCCCCCCCCccceEEEcC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVD---------GLWSSSGDGRILVMTTDYKD-HIDPVPLRPSCMDMHFHLS  138 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lD---------g~~~~~~~~~~vi~tTN~~~-~lD~AllRpgR~d~~i~~~  138 (170)
                      ..+||+||++.+      .....+.|++.|+         |.....+..+++++|+|..+ .++++++.  ||.+++.++
T Consensus       132 ~GvL~lDEi~~L------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~  203 (337)
T TIGR02030       132 RGILYIDEVNLL------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIR  203 (337)
T ss_pred             CCEEEecChHhC------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECC
Confidence            479999999976      3355667777764         22222345678888888665 78999996  999999999


Q ss_pred             CCCc
Q 036857          139 SHTF  142 (170)
Q Consensus       139 ~p~~  142 (170)
                      +|+.
T Consensus       204 ~p~~  207 (337)
T TIGR02030       204 TVRD  207 (337)
T ss_pred             CCCC
Confidence            9987

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=98.99  E-value=2.4e-09  Score=85.37  Aligned_cols=138  Identities=16%  Similarity=0.205  Sum_probs=75.0

Q ss_pred             CCCCCCCCcccccC--ChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-c-----ccc-----ccccc------
Q 036857           17 NKFEHPATSNTIAT--DFDMNKALVDDY----------WG-PYTGKSSLIAAMA-D-----LDL-----KEFQS------   66 (170)
Q Consensus        17 ~~~~~p~~~~~v~~--~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~-----~~l-----~~v~~------   66 (170)
                      ++...+.+|++.+.  +....+.+...+          || ||||||++|++++ .     ..+     ..+..      
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   85 (226)
T TIGR03420         6 VGLPDDPTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADPEVL   85 (226)
T ss_pred             CCCCCchhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhHHHHH
Confidence            34455566777763  222333333322          69 9999999999999 1     111     11111      


Q ss_pred             ---cCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC-CCCCCC---CCCCCCCcc--ceEEEc
Q 036857           67 ---NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD-YKDHID---PVPLRPSCM--DMHFHL  137 (170)
Q Consensus        67 ---~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN-~~~~lD---~AllRpgR~--d~~i~~  137 (170)
                         ..+.+|+|||+|.+....    .....+...++....   .+..+|+||| .+..++   +.+.+  |+  ...+++
T Consensus        86 ~~~~~~~lLvIDdi~~l~~~~----~~~~~L~~~l~~~~~---~~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l  156 (226)
T TIGR03420        86 EGLEQADLVCLDDVEAIAGQP----EWQEALFHLYNRVRE---AGGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQL  156 (226)
T ss_pred             hhcccCCEEEEeChhhhcCCh----HHHHHHHHHHHHHHH---cCCeEEEECCCChHHCCcccHHHHH--HHhcCeeEec
Confidence               125699999999874421    113445555555443   1234555665 444433   55664  55  578899


Q ss_pred             CCCCcchHHHHHHHHHhh--cCCCCHHHH
Q 036857          138 SSHTFRHYLFEKIEERLA--KIQATPAEV  164 (170)
Q Consensus       138 ~~p~~~~~l~~~~~~~~~--~~~~s~a~i  164 (170)
                      +.|+. .+....+...+.  ...++++.+
T Consensus       157 ~~l~~-~e~~~~l~~~~~~~~~~~~~~~l  184 (226)
T TIGR03420       157 PPLSD-EEKIAALQSRAARRGLQLPDEVA  184 (226)
T ss_pred             CCCCH-HHHHHHHHHHHHHcCCCCCHHHH
Confidence            98888 333333333332  224555544

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=98.97  E-value=2.4e-09  Score=100.47  Aligned_cols=92  Identities=17%  Similarity=0.279  Sum_probs=64.4

Q ss_pred             cc-CCCcHHHHHHHHH--------ccccccc---------cc--------------------cCceeEeeechhhhccCC
Q 036857           43 WG-PYTGKSSLIAAMA--------DLDLKEF---------QS--------------------NSRSILVIEDAVTSFESN   84 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA--------~~~l~~v---------~~--------------------~~p~il~iDEiD~~~~~~   84 (170)
                      +| ||||||.+|+++|        .++++..         ..                    +..+||||||+|...   
T Consensus       494 ~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~---  570 (758)
T PRK11034        494 AGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH---  570 (758)
T ss_pred             ECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhh---
Confidence            49 9999999999999        1222211         10                    115899999999873   


Q ss_pred             ccchHHHHHHHHHhhch-hccC------CCCeEEEEeCCCC-------------------------CCCCCCCCCCCccc
Q 036857           85 AYNSVALSALLKFVDGL-WSSS------GDGRILVMTTDYK-------------------------DHIDPVPLRPSCMD  132 (170)
Q Consensus        85 ~~~~~~~~~ll~~lDg~-~~~~------~~~~~vi~tTN~~-------------------------~~lD~AllRpgR~d  132 (170)
                         ....+.|++.||.- ....      -.++++|+|||.-                         ..+.|+|+  +|+|
T Consensus       571 ---~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl--~Rid  645 (758)
T PRK11034        571 ---PDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFR--NRLD  645 (758)
T ss_pred             ---HHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHH--ccCC
Confidence               35678888888732 2110      1377899999921                         12557777  5999


Q ss_pred             eEEEcCCCCc
Q 036857          133 MHFHLSSHTF  142 (170)
Q Consensus       133 ~~i~~~~p~~  142 (170)
                      ..|.|...+.
T Consensus       646 ~ii~f~~L~~  655 (758)
T PRK11034        646 NIIWFDHLST  655 (758)
T ss_pred             EEEEcCCCCH
Confidence            9999999888

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=3.3e-09  Score=97.76  Aligned_cols=117  Identities=18%  Similarity=0.212  Sum_probs=82.6

Q ss_pred             ccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH---cc---------cccc---------------cc
Q 036857           26 NTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA---DL---------DLKE---------------FQ   65 (170)
Q Consensus        26 ~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA---~~---------~l~~---------------v~   65 (170)
                      .+.+..+..|+...+..            +| +|||||.|+++++   ..         +.+.               ++
T Consensus       408 ~d~i~~~s~kke~~n~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vf  487 (952)
T KOG0735|consen  408 HDFIQVPSYKKENANQELSPVFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVF  487 (952)
T ss_pred             CceeecchhhhhhhhhhcccccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHH
Confidence            66666776666654322            69 9999999999999   11         1111               11


Q ss_pred             cc----CceeEeeechhhhcc----CCccc---hHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceE
Q 036857           66 SN----SRSILVIEDAVTSFE----SNAYN---SVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMH  134 (170)
Q Consensus        66 ~~----~p~il~iDEiD~~~~----~~~~~---~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~  134 (170)
                      ..    +|+||++|++|++++    ++++.   ...+..+++++--.....+..+.+|+|.+....+.|-|.-|++|+.+
T Consensus       488 se~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~  567 (952)
T KOG0735|consen  488 SEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIV  567 (952)
T ss_pred             HHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEE
Confidence            11    199999999999998    12222   23345556554333333345568999999999999999999999999


Q ss_pred             EEcCCCCc
Q 036857          135 FHLSSHTF  142 (170)
Q Consensus       135 i~~~~p~~  142 (170)
                      +.++.|+.
T Consensus       568 ~~L~ap~~  575 (952)
T KOG0735|consen  568 IALPAPAV  575 (952)
T ss_pred             EecCCcch
Confidence            99999999

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.95  E-value=4.4e-09  Score=96.81  Aligned_cols=112  Identities=20%  Similarity=0.251  Sum_probs=82.2

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-ccc------------------------
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLD------------------------   60 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~------------------------   60 (170)
                      ....|..|+++++++.+++.|...+           || ||||||++|+++| .+.                        
T Consensus         8 ~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g   87 (620)
T PRK14948          8 HKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAG   87 (620)
T ss_pred             HHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcC
Confidence            4668899999999999998876654           69 9999999999999 111                        


Q ss_pred             ----cccccccC----------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEe
Q 036857           61 ----LKEFQSNS----------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMT  114 (170)
Q Consensus        61 ----l~~v~~~~----------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~t  114 (170)
                          +..+....                      ..|++|||+|.+-      ....+.||..|+.-    +..+++|++
T Consensus        88 ~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt------~~a~naLLK~LEeP----p~~tvfIL~  157 (620)
T PRK14948         88 NALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS------TAAFNALLKTLEEP----PPRVVFVLA  157 (620)
T ss_pred             CCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC------HHHHHHHHHHHhcC----CcCeEEEEE
Confidence                11111100                      4699999999772      34567888888854    457778888


Q ss_pred             CCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          115 TDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       115 TN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      |+.++.+-++++.  |+ ..++|..++.
T Consensus       158 t~~~~~llpTIrS--Rc-~~~~f~~l~~  182 (620)
T PRK14948        158 TTDPQRVLPTIIS--RC-QRFDFRRIPL  182 (620)
T ss_pred             eCChhhhhHHHHh--he-eEEEecCCCH
Confidence            8888888888874  54 4577777665

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=98.95  E-value=1.9e-09  Score=93.12  Aligned_cols=112  Identities=20%  Similarity=0.229  Sum_probs=82.1

Q ss_pred             CCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH----ccc------c--------------------
Q 036857           23 ATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA----DLD------L--------------------   61 (170)
Q Consensus        23 ~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA----~~~------l--------------------   61 (170)
                      -+|.+++++++.|..|...+          .| +|||||++||+++    ...      +                    
T Consensus        14 ~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~~~~   93 (350)
T CHL00081         14 FPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREAIQN   93 (350)
T ss_pred             CCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhhhcc
Confidence            38999999999999987665          59 9999999999997    100      0                    


Q ss_pred             -----------c--c---------ccc----------------------cCceeEeeechhhhccCCccchHHHHHHHHH
Q 036857           62 -----------K--E---------FQS----------------------NSRSILVIEDAVTSFESNAYNSVALSALLKF   97 (170)
Q Consensus        62 -----------~--~---------v~~----------------------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~   97 (170)
                                 .  .         +..                      ....+||+||++.+-      ....+.|++.
T Consensus        94 ~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~------~~~Q~~LLea  167 (350)
T CHL00081         94 GETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD------DHLVDILLDS  167 (350)
T ss_pred             cccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC------HHHHHHHHHH
Confidence                       0  0         000                      005799999998763      3556667777


Q ss_pred             hhc---------hhccCCCCeEEEEeCCCCC-CCCCCCCCCCccceEEEcCCCCc
Q 036857           98 VDG---------LWSSSGDGRILVMTTDYKD-HIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus        98 lDg---------~~~~~~~~~~vi~tTN~~~-~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      |+.         .....+..+++++|.|..+ .+.++++.  ||.+++.+++|+.
T Consensus       168 m~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~  220 (350)
T CHL00081        168 AASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKD  220 (350)
T ss_pred             HHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCC
Confidence            643         3222345678888888666 68999986  9999999999985

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.95  E-value=4.4e-09  Score=96.16  Aligned_cols=112  Identities=17%  Similarity=0.219  Sum_probs=81.3

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-ccc------------------------
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLD------------------------   60 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~------------------------   60 (170)
                      ....|.+|+++++++.+++.|...+           || ||+|||++|+++| .+.                        
T Consensus         8 ~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~   87 (585)
T PRK14950          8 RKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGS   87 (585)
T ss_pred             HHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCC
Confidence            4678999999999999999887655           69 9999999999999 111                        


Q ss_pred             ---cccccc----------------------cCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeC
Q 036857           61 ---LKEFQS----------------------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTT  115 (170)
Q Consensus        61 ---l~~v~~----------------------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tT  115 (170)
                         +..+..                      ....|+||||+|.+.      ....+.|+..|+..    +...++|++|
T Consensus        88 ~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~------~~a~naLLk~LEep----p~~tv~Il~t  157 (585)
T PRK14950         88 AVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS------TAAFNALLKTLEEP----PPHAIFILAT  157 (585)
T ss_pred             CCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC------HHHHHHHHHHHhcC----CCCeEEEEEe
Confidence               100110                      006699999999773      24467788877765    3467777778


Q ss_pred             CCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          116 DYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       116 N~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      +..+.+.+.+..  |+ ..++|..++.
T Consensus       158 ~~~~kll~tI~S--R~-~~i~f~~l~~  181 (585)
T PRK14950        158 TEVHKVPATILS--RC-QRFDFHRHSV  181 (585)
T ss_pred             CChhhhhHHHHh--cc-ceeeCCCCCH
Confidence            888888888764  44 3577877666

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=98.94  E-value=3.7e-09  Score=93.06  Aligned_cols=75  Identities=27%  Similarity=0.313  Sum_probs=48.7

Q ss_pred             cc-CCCcHHHHHHHHH---cc-----cccccc-------------------------ccCceeEeeechhhhccCCc---
Q 036857           43 WG-PYTGKSSLIAAMA---DL-----DLKEFQ-------------------------SNSRSILVIEDAVTSFESNA---   85 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA---~~-----~l~~v~-------------------------~~~p~il~iDEiD~~~~~~~---   85 (170)
                      +| ||||||++|+++|   ..     +...+.                         ...++||||||||.+.....   
T Consensus       114 ~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~  193 (412)
T PRK05342        114 IGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPS  193 (412)
T ss_pred             EcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCC
Confidence            69 9999999999999   11     111110                         01279999999999976311   


Q ss_pred             -----cchHHHHHHHHHhhchhcc---------CCCCeEEEEeCCC
Q 036857           86 -----YNSVALSALLKFVDGLWSS---------SGDGRILVMTTDY  117 (170)
Q Consensus        86 -----~~~~~~~~ll~~lDg~~~~---------~~~~~~vi~tTN~  117 (170)
                           ....+.+.||+.|||....         ...+.++|+|+|-
T Consensus       194 ~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~ni  239 (412)
T PRK05342        194 ITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNI  239 (412)
T ss_pred             cCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCc
Confidence                 1124678899999975311         0124577778775

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.92  E-value=6.4e-09  Score=95.71  Aligned_cols=112  Identities=16%  Similarity=0.232  Sum_probs=81.2

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cccc-----------------------
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLDL-----------------------   61 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~l-----------------------   61 (170)
                      ...+|.+|+++++++.+++.|...+           || ||||||++|+++| .+..                       
T Consensus         8 ~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC   87 (620)
T PRK14954          8 RKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESC   87 (620)
T ss_pred             HHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHH
Confidence            3568999999999999999887755           69 9999999999999 2211                       


Q ss_pred             -----------ccccccC----------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCC
Q 036857           62 -----------KEFQSNS----------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDG  108 (170)
Q Consensus        62 -----------~~v~~~~----------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~  108 (170)
                                 ..+....                      ..|++|||+|.+..      ...+.|+..|+..    +..
T Consensus        88 ~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~------~a~naLLK~LEeP----p~~  157 (620)
T PRK14954         88 RDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST------AAFNAFLKTLEEP----PPH  157 (620)
T ss_pred             HHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH------HHHHHHHHHHhCC----CCC
Confidence                       1111100                      56899999987732      3467788877665    346


Q ss_pred             eEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          109 RILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       109 ~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      .++|++|+.++.|-+++..  |. ..++|..++.
T Consensus       158 tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~  188 (620)
T PRK14954        158 AIFIFATTELHKIPATIAS--RC-QRFNFKRIPL  188 (620)
T ss_pred             eEEEEEeCChhhhhHHHHh--hc-eEEecCCCCH
Confidence            6777777778888888875  33 5788888776

>PRK08727 hypothetical protein; Validated

Probab=98.90  E-value=1e-08  Score=83.50  Aligned_cols=117  Identities=16%  Similarity=0.116  Sum_probs=69.4

Q ss_pred             CCCCCCCCcccccCChhhH-HH---h-hc----Cc--cc-CCCcHHHHHHHHH----ccccccccc--------------
Q 036857           17 NKFEHPATSNTIATDFDMN-KA---L-VD----DY--WG-PYTGKSSLIAAMA----DLDLKEFQS--------------   66 (170)
Q Consensus        17 ~~~~~p~~~~~v~~~~~~k-~~---l-~~----~~--~G-PGtGKT~la~aiA----~~~l~~v~~--------------   66 (170)
                      ++.....+|++-+..+.-. ..   + ..    .+  || ||||||.+++|++    +.+...++.              
T Consensus        10 ~~~~~~~~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~   89 (233)
T PRK08727         10 LRYPSDQRFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALE   89 (233)
T ss_pred             CCCCCcCChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHH
Confidence            3445555777776555221 11   1 10    11  79 9999999999997    111111110              


Q ss_pred             --cCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC-CCCCC---CCCCCCCCcc--ceEEEcC
Q 036857           67 --NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD-YKDHI---DPVPLRPSCM--DMHFHLS  138 (170)
Q Consensus        67 --~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN-~~~~l---D~AllRpgR~--d~~i~~~  138 (170)
                        ....+|+|||+|.+.....    ....+...++....   .+.-+|+|+| .|..+   ++++.+  ||  ...++++
T Consensus        90 ~l~~~dlLiIDDi~~l~~~~~----~~~~lf~l~n~~~~---~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~  160 (233)
T PRK08727         90 ALEGRSLVALDGLESIAGQRE----DEVALFDFHNRARA---AGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLP  160 (233)
T ss_pred             HHhcCCEEEEeCcccccCChH----HHHHHHHHHHHHHH---cCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEec
Confidence              1167999999998765322    22344455555543   2444556555 66655   788886  76  5788888


Q ss_pred             CCCc
Q 036857          139 SHTF  142 (170)
Q Consensus       139 ~p~~  142 (170)
                      .|+.
T Consensus       161 ~~~~  164 (233)
T PRK08727        161 VLDD  164 (233)
T ss_pred             CCCH
Confidence            8887

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=2.6e-09  Score=95.40  Aligned_cols=97  Identities=28%  Similarity=0.385  Sum_probs=79.0

Q ss_pred             cc-CCCcHHHHHHHHHccc--c-----ccccc-------------------cCceeEeeechhhhccCCc-----cchHH
Q 036857           43 WG-PYTGKSSLIAAMADLD--L-----KEFQS-------------------NSRSILVIEDAVTSFESNA-----YNSVA   90 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA~~~--l-----~~v~~-------------------~~p~il~iDEiD~~~~~~~-----~~~~~   90 (170)
                      +| ||||||++++++|..+  .     ..+..                   .+|+++++||+|.+.+.+.     .....
T Consensus        24 ~g~~~~~~t~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~~~~~~~~~~~~~~~~~~~v  103 (494)
T COG0464          24 HGPPGTGKTLLARALANEGAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDEIDALAPKRSSDQGEVERRV  103 (494)
T ss_pred             eCCCCCchhHHHHHHHhccCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeechhhhcccCccccccchhhHH
Confidence            69 9999999999998211  0     10000                   1189999999999998332     34567


Q ss_pred             HHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857           91 LSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus        91 ~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      .++++..+|++.  ... ++++..||.+..+|+|+.|||||+..+++..|+.
T Consensus       104 ~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  152 (494)
T COG0464         104 VAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDE  152 (494)
T ss_pred             HHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccccceeeecCCCCH
Confidence            899999999998  356 8899999999999999999999999999999999

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=98.88  E-value=7.2e-09  Score=91.25  Aligned_cols=75  Identities=20%  Similarity=0.245  Sum_probs=49.4

Q ss_pred             cc-CCCcHHHHHHHHH-cc--ccc-----cc------c-------------------ccCceeEeeechhhhccCCcc--
Q 036857           43 WG-PYTGKSSLIAAMA-DL--DLK-----EF------Q-------------------SNSRSILVIEDAVTSFESNAY--   86 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~--~l~-----~v------~-------------------~~~p~il~iDEiD~~~~~~~~--   86 (170)
                      +| ||||||++|+++| .+  .+.     .+      .                   ...++||||||+|.+......  
T Consensus       122 ~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s  201 (413)
T TIGR00382       122 IGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPS  201 (413)
T ss_pred             ECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhcccc
Confidence            59 9999999999999 11  111     00      0                   011679999999999862211  


Q ss_pred             ------chHHHHHHHHHhhchhcc---------CCCCeEEEEeCCC
Q 036857           87 ------NSVALSALLKFVDGLWSS---------SGDGRILVMTTDY  117 (170)
Q Consensus        87 ------~~~~~~~ll~~lDg~~~~---------~~~~~~vi~tTN~  117 (170)
                            ...+.+.||+.|||....         ...+.++|+|+|-
T Consensus       202 ~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNi  247 (413)
T TIGR00382       202 ITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNI  247 (413)
T ss_pred             ccccccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCc
Confidence                  114778899999886421         0135688999885

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=98.87  E-value=7.7e-09  Score=96.74  Aligned_cols=92  Identities=20%  Similarity=0.282  Sum_probs=64.1

Q ss_pred             cc-CCCcHHHHHHHHH--------ccccccccc-----------------------------cCceeEeeechhhhccCC
Q 036857           43 WG-PYTGKSSLIAAMA--------DLDLKEFQS-----------------------------NSRSILVIEDAVTSFESN   84 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA--------~~~l~~v~~-----------------------------~~p~il~iDEiD~~~~~~   84 (170)
                      +| ||||||++|+++|        .++++....                             +..+||||||+|...   
T Consensus       490 ~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~---  566 (731)
T TIGR02639       490 TGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAH---  566 (731)
T ss_pred             ECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcC---
Confidence            59 9999999999999        122222111                             116899999999763   


Q ss_pred             ccchHHHHHHHHHhhchhcc--C-----CCCeEEEEeCCCCC-------------------------CCCCCCCCCCccc
Q 036857           85 AYNSVALSALLKFVDGLWSS--S-----GDGRILVMTTDYKD-------------------------HIDPVPLRPSCMD  132 (170)
Q Consensus        85 ~~~~~~~~~ll~~lDg~~~~--~-----~~~~~vi~tTN~~~-------------------------~lD~AllRpgR~d  132 (170)
                         ....+.|++.+|.-.-.  .     -.+.++|+|||.-.                         .+.|.|+  +|+|
T Consensus       567 ---~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~--~Rid  641 (731)
T TIGR02639       567 ---PDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFR--NRLD  641 (731)
T ss_pred             ---HHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHH--hcCC
Confidence               35677888888753210  0     13678999999531                         2466666  6999


Q ss_pred             eEEEcCCCCc
Q 036857          133 MHFHLSSHTF  142 (170)
Q Consensus       133 ~~i~~~~p~~  142 (170)
                      ..|.|...+.
T Consensus       642 ~Vi~F~pLs~  651 (731)
T TIGR02639       642 AIIHFNPLSE  651 (731)
T ss_pred             eEEEcCCCCH
Confidence            9999999888

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=98.86  E-value=4.8e-09  Score=84.44  Aligned_cols=87  Identities=20%  Similarity=0.238  Sum_probs=58.0

Q ss_pred             CcccccCChhhHHHhhcCc--------cc-CCCcHHHHHHHHH----------cccccccc---c---c-----------
Q 036857           24 TSNTIATDFDMNKALVDDY--------WG-PYTGKSSLIAAMA----------DLDLKEFQ---S---N-----------   67 (170)
Q Consensus        24 ~~~~v~~~~~~k~~l~~~~--------~G-PGtGKT~la~aiA----------~~~l~~v~---~---~-----------   67 (170)
                      .|.+|.+++..|+.+.-..        +| |||||||+|++++          .+++..+.   .   .           
T Consensus         1 Df~dI~GQe~aKrAL~iAAaG~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pfr~   80 (206)
T PF01078_consen    1 DFSDIVGQEEAKRALEIAAAGGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPFRA   80 (206)
T ss_dssp             -TCCSSSTHHHHHHHHHHHHCC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---EEE
T ss_pred             ChhhhcCcHHHHHHHHHHHcCCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCccc
Confidence            3789999999999887555        69 9999999999999          11222111   1   0           


Q ss_pred             -------------------------CceeEeeechhhhccCCccchHHHHHHHHHhhch---------hccCCCCeEEEE
Q 036857           68 -------------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGL---------WSSSGDGRILVM  113 (170)
Q Consensus        68 -------------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~---------~~~~~~~~~vi~  113 (170)
                                               ...|||+||+-.+      ....+..|++.|+.-         .-..+.+.++|+
T Consensus        81 phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef------~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~  154 (206)
T PF01078_consen   81 PHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEF------DRSVLDALRQPLEDGEVTISRAGGSVTYPARFLLVA  154 (206)
T ss_dssp             E-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-------HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEE
T ss_pred             CCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhc------CHHHHHHHHHHHHCCeEEEEECCceEEEecccEEEE
Confidence                                     0889999999543      567777777777522         222345778999


Q ss_pred             eCC
Q 036857          114 TTD  116 (170)
Q Consensus       114 tTN  116 (170)
                      |+|
T Consensus       155 a~N  157 (206)
T PF01078_consen  155 AMN  157 (206)
T ss_dssp             EE-
T ss_pred             Eec
Confidence            988

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>PRK08084 DNA replication initiation factor; Provisional

Probab=98.84  E-value=2.5e-08  Score=81.30  Aligned_cols=118  Identities=15%  Similarity=0.164  Sum_probs=68.6

Q ss_pred             CCCCCCCcccccCC--hhhHHHhhcCc----------cc-CCCcHHHHHHHHH----cc----ccccccc---c------
Q 036857           18 KFEHPATSNTIATD--FDMNKALVDDY----------WG-PYTGKSSLIAAMA----DL----DLKEFQS---N------   67 (170)
Q Consensus        18 ~~~~p~~~~~v~~~--~~~k~~l~~~~----------~G-PGtGKT~la~aiA----~~----~l~~v~~---~------   67 (170)
                      ...+..+|++.+..  ......+....          || ||||||+++++++    ..    .+..+..   .      
T Consensus        14 ~~~~~~~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~   93 (235)
T PRK08084         14 YLPDDETFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVLE   93 (235)
T ss_pred             CCCCcCCccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHHH
Confidence            34555578877633  33333332211          79 9999999999999    11    1111100   0      


Q ss_pred             ---CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCC---CCCCCCCCCccc--eEEEcCC
Q 036857           68 ---SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDH---IDPVPLRPSCMD--MHFHLSS  139 (170)
Q Consensus        68 ---~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~---lD~AllRpgR~d--~~i~~~~  139 (170)
                         ...+|+|||++.+.+.    ......+...++...+. +...+++.+++.+..   +.|.+..  |+.  ..+++..
T Consensus        94 ~~~~~dlliiDdi~~~~~~----~~~~~~lf~l~n~~~e~-g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~  166 (235)
T PRK08084         94 GMEQLSLVCIDNIECIAGD----ELWEMAIFDLYNRILES-GRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQP  166 (235)
T ss_pred             HhhhCCEEEEeChhhhcCC----HHHHHHHHHHHHHHHHc-CCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecC
Confidence               0358999999987542    22233344455554431 222455555556665   5788875  876  8889999


Q ss_pred             CCc
Q 036857          140 HTF  142 (170)
Q Consensus       140 p~~  142 (170)
                      |+.
T Consensus       167 ~~~  169 (235)
T PRK08084        167 LSD  169 (235)
T ss_pred             CCH
Confidence            876

>smart00350 MCM minichromosome maintenance proteins

Probab=98.83  E-value=3.1e-08  Score=89.24  Aligned_cols=92  Identities=14%  Similarity=0.157  Sum_probs=62.6

Q ss_pred             cc-CCCcHHHHHHHHHcc------------c---c--ccccc---------------cCceeEeeechhhhccCCccchH
Q 036857           43 WG-PYTGKSSLIAAMADL------------D---L--KEFQS---------------NSRSILVIEDAVTSFESNAYNSV   89 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA~~------------~---l--~~v~~---------------~~p~il~iDEiD~~~~~~~~~~~   89 (170)
                      +| ||||||++||+++.+            .   +  ..+..               ....++++||+|.+-      ..
T Consensus       242 ~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~------~~  315 (509)
T smart00350      242 LGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLADNGVCCIDEFDKMD------DS  315 (509)
T ss_pred             eCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEEecCCCEEEEechhhCC------HH
Confidence            59 999999999999910            0   1  00011               016799999999873      24


Q ss_pred             HHHHHHHHhh---------chhccCCCCeEEEEeCCCCC-------------CCCCCCCCCCccceEEEc-CCCCc
Q 036857           90 ALSALLKFVD---------GLWSSSGDGRILVMTTDYKD-------------HIDPVPLRPSCMDMHFHL-SSHTF  142 (170)
Q Consensus        90 ~~~~ll~~lD---------g~~~~~~~~~~vi~tTN~~~-------------~lD~AllRpgR~d~~i~~-~~p~~  142 (170)
                      ..+.|++.|+         |.....+....+|+|+|..+             .|+++++.  |||+.+.+ ++|+.
T Consensus       316 ~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~  389 (509)
T smart00350      316 DRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDE  389 (509)
T ss_pred             HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCCh
Confidence            4555666663         32222345778999999764             59999996  99987665 67777

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=98.82  E-value=1.2e-08  Score=90.32  Aligned_cols=92  Identities=14%  Similarity=0.204  Sum_probs=60.5

Q ss_pred             cc-CCCcHHHHHHHHH-c---c--ccccccc-------------------------cCceeEeeechhhhccCCccchHH
Q 036857           43 WG-PYTGKSSLIAAMA-D---L--DLKEFQS-------------------------NSRSILVIEDAVTSFESNAYNSVA   90 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~---~--~l~~v~~-------------------------~~p~il~iDEiD~~~~~~~~~~~~   90 (170)
                      || ||||||+|++++| .   .  +...++.                         ..+.+|+|||+|.+.+.    ...
T Consensus       154 ~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~----~~~  229 (450)
T PRK00149        154 YGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGK----ERT  229 (450)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCC----HHH
Confidence            79 9999999999999 1   1  1111110                         01679999999988552    223


Q ss_pred             HHHHHHHhhchhccCCCCeEEEEeCCCCCC---CCCCCCCCCccc--eEEEcCCCCc
Q 036857           91 LSALLKFVDGLWSSSGDGRILVMTTDYKDH---IDPVPLRPSCMD--MHFHLSSHTF  142 (170)
Q Consensus        91 ~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~---lD~AllRpgR~d--~~i~~~~p~~  142 (170)
                      ...++..++.+...  ...++|.+++.|..   +++.+.  .||.  ..+++..|+.
T Consensus       230 ~~~l~~~~n~l~~~--~~~iiits~~~p~~l~~l~~~l~--SRl~~gl~v~i~~pd~  282 (450)
T PRK00149        230 QEEFFHTFNALHEA--GKQIVLTSDRPPKELPGLEERLR--SRFEWGLTVDIEPPDL  282 (450)
T ss_pred             HHHHHHHHHHHHHC--CCcEEEECCCCHHHHHHHHHHHH--hHhcCCeeEEecCCCH
Confidence            45677777777652  23344444445554   677877  4886  6899999998

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.81  E-value=2.6e-08  Score=91.65  Aligned_cols=113  Identities=19%  Similarity=0.264  Sum_probs=83.3

Q ss_pred             CCCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-ccc-----------------------
Q 036857           17 NKFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLD-----------------------   60 (170)
Q Consensus        17 ~~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~-----------------------   60 (170)
                      .....|.+|++|++++.+++.|...+           || ||+|||++|+++| .+.                       
T Consensus         8 ~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~   87 (614)
T PRK14971          8 ARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQ   87 (614)
T ss_pred             HHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcC
Confidence            34678999999999999998887766           69 9999999999999 221                       


Q ss_pred             ----ccccccc----------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEe
Q 036857           61 ----LKEFQSN----------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMT  114 (170)
Q Consensus        61 ----l~~v~~~----------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~t  114 (170)
                          +..+...                      ..-|++|||+|.+.      ....+.|+..|+..    +...++|++
T Consensus        88 ~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls------~~a~naLLK~LEep----p~~tifIL~  157 (614)
T PRK14971         88 RSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS------QAAFNAFLKTLEEP----PSYAIFILA  157 (614)
T ss_pred             CCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC------HHHHHHHHHHHhCC----CCCeEEEEE
Confidence                1111100                      04589999998772      34567788888765    356777787


Q ss_pred             CCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          115 TDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       115 TN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      |+..+.|-+++..  |. ..++|..++.
T Consensus       158 tt~~~kIl~tI~S--Rc-~iv~f~~ls~  182 (614)
T PRK14971        158 TTEKHKILPTILS--RC-QIFDFNRIQV  182 (614)
T ss_pred             eCCchhchHHHHh--hh-heeecCCCCH
Confidence            8778899999876  54 3488887776

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=98.81  E-value=2.3e-08  Score=87.33  Aligned_cols=92  Identities=13%  Similarity=0.227  Sum_probs=59.2

Q ss_pred             cc-CCCcHHHHHHHHH-cc-----cccccccc-------------------------CceeEeeechhhhccCCccchHH
Q 036857           43 WG-PYTGKSSLIAAMA-DL-----DLKEFQSN-------------------------SRSILVIEDAVTSFESNAYNSVA   90 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~-----~l~~v~~~-------------------------~p~il~iDEiD~~~~~~~~~~~~   90 (170)
                      || ||||||+|+++++ .+     +...++.+                         .+.+|+|||+|.+.+.    ...
T Consensus       142 ~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~----~~~  217 (405)
T TIGR00362       142 YGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGK----ERT  217 (405)
T ss_pred             ECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcCC----HHH
Confidence            79 9999999999999 11     11111100                         1679999999988552    123


Q ss_pred             HHHHHHHhhchhccCCCCeEEEEeCCCCCC---CCCCCCCCCccc--eEEEcCCCCc
Q 036857           91 LSALLKFVDGLWSSSGDGRILVMTTDYKDH---IDPVPLRPSCMD--MHFHLSSHTF  142 (170)
Q Consensus        91 ~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~---lD~AllRpgR~d--~~i~~~~p~~  142 (170)
                      ...++..++.+...  +..++|.+++.|..   +++.+..  ||.  ..++++.|+.
T Consensus       218 ~~~l~~~~n~~~~~--~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~  270 (405)
T TIGR00362       218 QEEFFHTFNALHEN--GKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDL  270 (405)
T ss_pred             HHHHHHHHHHHHHC--CCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCH
Confidence            45566777776542  23444444445554   5677774  886  5899999998

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PHA02244 ATPase-like protein

Probab=98.81  E-value=1.2e-08  Score=88.72  Aligned_cols=90  Identities=17%  Similarity=0.224  Sum_probs=60.5

Q ss_pred             cc-CCCcHHHHHHHHH---ccccc---------ccc---c--------------cCceeEeeechhhhccCCccchHHHH
Q 036857           43 WG-PYTGKSSLIAAMA---DLDLK---------EFQ---S--------------NSRSILVIEDAVTSFESNAYNSVALS   92 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA---~~~l~---------~v~---~--------------~~p~il~iDEiD~~~~~~~~~~~~~~   92 (170)
                      +| ||||||++|+++|   ...+.         .+.   .              ....+++|||+|...+      .+..
T Consensus       125 ~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId~a~p------~vq~  198 (383)
T PHA02244        125 KGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDASIP------EALI  198 (383)
T ss_pred             ECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhhcCCEEEEeCcCcCCH------HHHH
Confidence            69 9999999999999   11111         000   0              0168999999986632      3333


Q ss_pred             HHHHHhh--------chhccCCCCeEEEEeCCCC-----------CCCCCCCCCCCccceEEEcCCCCc
Q 036857           93 ALLKFVD--------GLWSSSGDGRILVMTTDYK-----------DHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus        93 ~ll~~lD--------g~~~~~~~~~~vi~tTN~~-----------~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      .|...++        +... ...++-+|+|+|..           ..+++|++-  || ..|+|+||+.
T Consensus       199 ~L~~lLd~r~l~l~g~~i~-~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~dyp~~  263 (383)
T PHA02244        199 IINSAIANKFFDFADERVT-AHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIEFDYDEK  263 (383)
T ss_pred             HHHHHhccCeEEecCcEEe-cCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEeeCCCCcH
Confidence            4444443        2221 13477899999973           688999995  99 4799999987

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=98.80  E-value=5.7e-08  Score=83.94  Aligned_cols=111  Identities=17%  Similarity=0.202  Sum_probs=82.8

Q ss_pred             CCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH----c-----c------------------
Q 036857           19 FEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA----D-----L------------------   59 (170)
Q Consensus        19 ~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA----~-----~------------------   59 (170)
                      ..||+.++.+++++...+.+...+           +| +|+|||++|+++|    .     .                  
T Consensus        16 ~~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i   95 (351)
T PRK09112         16 VPSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQI   95 (351)
T ss_pred             CCCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHH
Confidence            469999999999999999988776           49 9999999999999    1     0                  


Q ss_pred             ------cccccc----c------cC---------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchh
Q 036857           60 ------DLKEFQ----S------NS---------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLW  102 (170)
Q Consensus        60 ------~l~~v~----~------~~---------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~  102 (170)
                            ++..+.    .      ..                     ..|++|||+|.+      +....+.||..++.- 
T Consensus        96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l------~~~aanaLLk~LEEp-  168 (351)
T PRK09112         96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM------NRNAANAILKTLEEP-  168 (351)
T ss_pred             HcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc------CHHHHHHHHHHHhcC-
Confidence                  000010    0      00                     568889999877      344567788888764 


Q ss_pred             ccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          103 SSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       103 ~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                         +.+.++|+.|+.++.+.|.+..  |+ .+++|+.|+.
T Consensus       169 ---p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~  202 (351)
T PRK09112        169 ---PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDD  202 (351)
T ss_pred             ---CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCH
Confidence               3466777777888888888764  77 5999988887

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.80  E-value=1.5e-08  Score=72.24  Aligned_cols=69  Identities=17%  Similarity=0.242  Sum_probs=38.4

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSH  140 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p  140 (170)
                      +.+||+||++.+.......................  .....+|+|+|......+..+++ |++.++.+..+
T Consensus        79 ~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~  147 (148)
T smart00382       79 PDVLILDEITSLLDAEQEALLLLLEELRLLLLLKS--EKNLTVILTTNDEKDLGPALLRR-RFDRRIVLLLI  147 (148)
T ss_pred             CCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHh--cCCCEEEEEeCCCccCchhhhhh-ccceEEEecCC
Confidence            59999999998866221111100000001111111  35778888888744444444443 99999888665

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=98.79  E-value=2.4e-08  Score=86.67  Aligned_cols=111  Identities=21%  Similarity=0.266  Sum_probs=83.9

Q ss_pred             CCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH------c---cc-----------------
Q 036857           19 FEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA------D---LD-----------------   60 (170)
Q Consensus        19 ~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA------~---~~-----------------   60 (170)
                      .-+|+.++++++++..++.+...+           +| +|+||+++|.++|      .   .+                 
T Consensus        12 ~~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~   91 (365)
T PRK07471         12 APHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPV   91 (365)
T ss_pred             CCCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChH
Confidence            368999999999999999887776           59 9999999999999      1   00                 


Q ss_pred             -----------ccccc----c------c---------------------CceeEeeechhhhccCCccchHHHHHHHHHh
Q 036857           61 -----------LKEFQ----S------N---------------------SRSILVIEDAVTSFESNAYNSVALSALLKFV   98 (170)
Q Consensus        61 -----------l~~v~----~------~---------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~l   98 (170)
                                 +..+.    .      .                     .+.|++|||+|.+      +....+.||..+
T Consensus        92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m------~~~aanaLLK~L  165 (365)
T PRK07471         92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM------NANAANALLKVL  165 (365)
T ss_pred             HHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc------CHHHHHHHHHHH
Confidence                       00010    0      0                     0779999999876      346677888888


Q ss_pred             hchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857           99 DGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus        99 Dg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      ..-    +.+.++|++|+.++.+.+.+..  |+ ..+.|+.|+.
T Consensus       166 Eep----p~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~  202 (365)
T PRK07471        166 EEP----PARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAP  202 (365)
T ss_pred             hcC----CCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCH
Confidence            754    3577888899999999888764  54 5788888877

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=98.79  E-value=4.8e-08  Score=76.44  Aligned_cols=62  Identities=21%  Similarity=0.243  Sum_probs=47.3

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCcc
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTFR  143 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~~  143 (170)
                      ..|+++||+|.+..      ...+.|+..|+..    +...++|++||.+..+++++.+  |. ..++|..|+..
T Consensus        97 ~kviiide~~~l~~------~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~i~s--r~-~~~~~~~~~~~  158 (188)
T TIGR00678        97 RRVVIIEDAERMNE------AAANALLKTLEEP----PPNTLFILITPSPEKLLPTIRS--RC-QVLPFPPLSEE  158 (188)
T ss_pred             eEEEEEechhhhCH------HHHHHHHHHhcCC----CCCeEEEEEECChHhChHHHHh--hc-EEeeCCCCCHH
Confidence            67999999998733      3466788888663    3467777778888999999986  55 47899888863

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=98.78  E-value=9.7e-09  Score=92.44  Aligned_cols=99  Identities=20%  Similarity=0.281  Sum_probs=77.0

Q ss_pred             CCCCCCcccccCChhhHHHhhcCc--------c---c-CCCcHHHHHHHHH-ccc-------------------------
Q 036857           19 FEHPATSNTIATDFDMNKALVDDY--------W---G-PYTGKSSLIAAMA-DLD-------------------------   60 (170)
Q Consensus        19 ~~~p~~~~~v~~~~~~k~~l~~~~--------~---G-PGtGKT~la~aiA-~~~-------------------------   60 (170)
                      ..+|..|+++++++.+...|...+        |   | -|||||++||.+| .++                         
T Consensus         9 KyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~   88 (515)
T COG2812           9 KYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLI   88 (515)
T ss_pred             HhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcc
Confidence            356899999999999999988777        3   9 9999999999999 221                         


Q ss_pred             -cccccccC----------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCC
Q 036857           61 -LKEFQSNS----------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDY  117 (170)
Q Consensus        61 -l~~v~~~~----------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~  117 (170)
                       +..+...+                      .-|++|||++.+      +....++||..+..-    +..|++|++|-.
T Consensus        89 DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML------S~~afNALLKTLEEP----P~hV~FIlATTe  158 (515)
T COG2812          89 DVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML------SKQAFNALLKTLEEP----PSHVKFILATTE  158 (515)
T ss_pred             cchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh------hHHHHHHHhcccccC----ccCeEEEEecCC
Confidence             11111111                      779999999866      446678888776554    678999999999


Q ss_pred             CCCCCCCCCC
Q 036857          118 KDHIDPVPLR  127 (170)
Q Consensus       118 ~~~lD~AllR  127 (170)
                      ++++++-++.
T Consensus       159 ~~Kip~TIlS  168 (515)
T COG2812         159 PQKIPNTILS  168 (515)
T ss_pred             cCcCchhhhh
Confidence            9999999984

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=98.75  E-value=6e-08  Score=82.75  Aligned_cols=68  Identities=9%  Similarity=0.014  Sum_probs=43.6

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC---CCCCCCCCCCccc-eEEEcCCCCc
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD---HIDPVPLRPSCMD-MHFHLSSHTF  142 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~---~lD~AllRpgR~d-~~i~~~~p~~  142 (170)
                      +.||+|||+|.+...   ....+..++...+.. ...+.++.+|++||.++   .+++.+.+  ||. ..|+|+.++.
T Consensus       130 ~~vlvIDE~d~L~~~---~~~~L~~l~~~~~~~-~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~  201 (365)
T TIGR02928       130 SLIIVLDEIDYLVGD---DDDLLYQLSRARSNG-DLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDA  201 (365)
T ss_pred             eEEEEECchhhhccC---CcHHHHhHhcccccc-CCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCH
Confidence            679999999999742   122344444331111 11135788899999776   57887765  664 6788888876

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit

Probab=98.74  E-value=4.9e-08  Score=90.09  Aligned_cols=111  Identities=20%  Similarity=0.185  Sum_probs=78.2

Q ss_pred             CcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHHc-cc-------------------------------
Q 036857           24 TSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMAD-LD-------------------------------   60 (170)
Q Consensus        24 ~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA~-~~-------------------------------   60 (170)
                      +|..|++++.+|..+.-.+          +| ||||||++||+++. +.                               
T Consensus         2 pf~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~   81 (633)
T TIGR02442         2 PFTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPS   81 (633)
T ss_pred             CcchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhccccc
Confidence            6889999999888765433          59 99999999999981 10                               


Q ss_pred             ------ccc---------cccc----------------------CceeEeeechhhhccCCccchHHHHHHHHHhhc---
Q 036857           61 ------LKE---------FQSN----------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDG---  100 (170)
Q Consensus        61 ------l~~---------v~~~----------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg---  100 (170)
                            +..         +...                      ...+||+||++.+      .....+.|++.|+.   
T Consensus        82 ~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l------~~~~q~~Ll~~le~g~~  155 (633)
T TIGR02442        82 EQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLL------DDHLVDVLLDAAAMGVN  155 (633)
T ss_pred             ccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhC------CHHHHHHHHHHHhcCCE
Confidence                  000         0000                      0459999999977      34556777777752   


Q ss_pred             ------hhccCCCCeEEEEeCCCC-CCCCCCCCCCCccceEEEcCCCCc
Q 036857          101 ------LWSSSGDGRILVMTTDYK-DHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       101 ------~~~~~~~~~~vi~tTN~~-~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                            .....+..+.+|+|+|.. ..+.++|+.  ||+++|.+++|..
T Consensus       156 ~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~  202 (633)
T TIGR02442       156 RVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRD  202 (633)
T ss_pred             EEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCc
Confidence                  112223468899999964 368888985  9999999998875

A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.

>PRK13531 regulatory ATPase RavA; Provisional

Probab=98.73  E-value=6.3e-08  Score=86.76  Aligned_cols=67  Identities=13%  Similarity=0.129  Sum_probs=44.4

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhh-chhcc-----CCCCeEEEEeCCCCC---CCCCCCCCCCccceEEEcCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVD-GLWSS-----SGDGRILVMTTDYKD---HIDPVPLRPSCMDMHFHLSS  139 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lD-g~~~~-----~~~~~~vi~tTN~~~---~lD~AllRpgR~d~~i~~~~  139 (170)
                      ..++|+|||..      .+....+.||+.|. +....     .-...++++|||...   ...+|+.  .||-+++.+++
T Consensus       108 A~lLfLDEI~r------asp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~--DRFliri~vp~  179 (498)
T PRK13531        108 AEIVFLDEIWK------AGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALY--DRMLIRLWLDK  179 (498)
T ss_pred             ccEEeeccccc------CCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhH--hhEEEEEECCC
Confidence            34899999964      45677888998883 22110     012346777778332   2334888  59999999999


Q ss_pred             CCcc
Q 036857          140 HTFR  143 (170)
Q Consensus       140 p~~~  143 (170)
                      |+..
T Consensus       180 l~~~  183 (498)
T PRK13531        180 VQDK  183 (498)
T ss_pred             CCch
Confidence            9863

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=98.72  E-value=4.4e-08  Score=87.03  Aligned_cols=91  Identities=15%  Similarity=0.258  Sum_probs=58.5

Q ss_pred             cc-CCCcHHHHHHHHH-c-----ccccc-------------cc----------ccCceeEeeechhhhccCCccchHHHH
Q 036857           43 WG-PYTGKSSLIAAMA-D-----LDLKE-------------FQ----------SNSRSILVIEDAVTSFESNAYNSVALS   92 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~-----~~l~~-------------v~----------~~~p~il~iDEiD~~~~~~~~~~~~~~   92 (170)
                      || ||+|||+|++|++ .     ..+..             +.          .....+|+|||++.+.+..    ....
T Consensus       147 ~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~----~~qe  222 (445)
T PRK12422        147 FGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKG----ATQE  222 (445)
T ss_pred             EcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCCh----hhHH
Confidence            89 9999999999999 1     11100             00          1127799999999875421    2234


Q ss_pred             HHHHHhhchhccCCCCeEEEEeCCC-C---CCCCCCCCCCCccc--eEEEcCCCCc
Q 036857           93 ALLKFVDGLWSSSGDGRILVMTTDY-K---DHIDPVPLRPSCMD--MHFHLSSHTF  142 (170)
Q Consensus        93 ~ll~~lDg~~~~~~~~~~vi~tTN~-~---~~lD~AllRpgR~d--~~i~~~~p~~  142 (170)
                      .+...++.+..   .+..+|+|||. |   ..+++.+.+  ||.  ..+.+..|+.
T Consensus       223 elf~l~N~l~~---~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~  273 (445)
T PRK12422        223 EFFHTFNSLHT---EGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTK  273 (445)
T ss_pred             HHHHHHHHHHH---CCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCH
Confidence            45555555543   23456666654 4   356788886  885  8889988987

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=98.71  E-value=3.8e-08  Score=83.17  Aligned_cols=106  Identities=19%  Similarity=0.254  Sum_probs=80.2

Q ss_pred             CcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHHc-----------cccccccc---cC---------
Q 036857           24 TSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMAD-----------LDLKEFQS---NS---------   68 (170)
Q Consensus        24 ~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA~-----------~~l~~v~~---~~---------   68 (170)
                      +|+++++++.+++.+...+           +| +|+|||++|+++|.           .++..+..   ..         
T Consensus         2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~   81 (313)
T PRK05564          2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNI   81 (313)
T ss_pred             ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHH
Confidence            5899999999998887766           69 99999999999991           12212211   10         


Q ss_pred             ------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEE
Q 036857           69 ------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFH  136 (170)
Q Consensus        69 ------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~  136 (170)
                                  ..|++|||+|.+      +....+.||..++.-    +.++++|++|+.++.+-|.+..  |. ..++
T Consensus        82 ~~~~~~~p~~~~~kv~iI~~ad~m------~~~a~naLLK~LEep----p~~t~~il~~~~~~~ll~TI~S--Rc-~~~~  148 (313)
T PRK05564         82 IEEVNKKPYEGDKKVIIIYNSEKM------TEQAQNAFLKTIEEP----PKGVFIILLCENLEQILDTIKS--RC-QIYK  148 (313)
T ss_pred             HHHHhcCcccCCceEEEEechhhc------CHHHHHHHHHHhcCC----CCCeEEEEEeCChHhCcHHHHh--hc-eeee
Confidence                        669999999876      344577888888764    4678888888889999998875  55 4888


Q ss_pred             cCCCCc
Q 036857          137 LSSHTF  142 (170)
Q Consensus       137 ~~~p~~  142 (170)
                      |..|+.
T Consensus       149 ~~~~~~  154 (313)
T PRK05564        149 LNRLSK  154 (313)
T ss_pred             CCCcCH
Confidence            888877

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=98.70  E-value=4.8e-08  Score=89.59  Aligned_cols=91  Identities=13%  Similarity=0.209  Sum_probs=60.0

Q ss_pred             cc-CCCcHHHHHHHHH----cc--ccccccc-------------------------cCceeEeeechhhhccCCccchHH
Q 036857           43 WG-PYTGKSSLIAAMA----DL--DLKEFQS-------------------------NSRSILVIEDAVTSFESNAYNSVA   90 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA----~~--~l~~v~~-------------------------~~p~il~iDEiD~~~~~~~~~~~~   90 (170)
                      || +|||||.|++||+    ..  +...++.                         ..+.+|+||||+.+....    ..
T Consensus       320 yG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke----~t  395 (617)
T PRK14086        320 YGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKE----ST  395 (617)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCH----HH
Confidence            79 9999999999999    10  1111111                         116799999999886522    22


Q ss_pred             HHHHHHHhhchhccCCCCeEEEEeCCCC----CCCCCCCCCCCcc--ceEEEcCCCCc
Q 036857           91 LSALLKFVDGLWSSSGDGRILVMTTDYK----DHIDPVPLRPSCM--DMHFHLSSHTF  142 (170)
Q Consensus        91 ~~~ll~~lDg~~~~~~~~~~vi~tTN~~----~~lD~AllRpgR~--d~~i~~~~p~~  142 (170)
                      ...|.+.++.+..   .+.-+|+|+|.+    ..+++.|..  ||  ...+++..|+.
T Consensus       396 qeeLF~l~N~l~e---~gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~  448 (617)
T PRK14086        396 QEEFFHTFNTLHN---ANKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPEL  448 (617)
T ss_pred             HHHHHHHHHHHHh---cCCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCH
Confidence            3556666666654   234455677743    357788886  76  57778888988

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=98.70  E-value=1.3e-07  Score=81.67  Aligned_cols=67  Identities=16%  Similarity=0.104  Sum_probs=44.2

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC---CCCCCCCCCCccc-eEEEcCCCCc
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD---HIDPVPLRPSCMD-MHFHLSSHTF  142 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~---~lD~AllRpgR~d-~~i~~~~p~~  142 (170)
                      +.||+|||+|.+...  .....+..++..++...   +.++.+|+++|..+   .+++.+..  |+. ..|+|+.++.
T Consensus       139 ~~viviDE~d~l~~~--~~~~~l~~l~~~~~~~~---~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~  209 (394)
T PRK00411        139 VLIVALDDINYLFEK--EGNDVLYSLLRAHEEYP---GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTA  209 (394)
T ss_pred             EEEEEECCHhHhhcc--CCchHHHHHHHhhhccC---CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCH
Confidence            579999999998721  22345666666655543   23777888888654   56666653  443 5678877776

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=98.67  E-value=1.4e-07  Score=86.82  Aligned_cols=40  Identities=23%  Similarity=0.282  Sum_probs=32.6

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA   57 (170)
                      ....|.+|+++++.....+.+...+          +| ||||||++|++++
T Consensus       146 ~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~  196 (615)
T TIGR02903       146 SLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLAL  196 (615)
T ss_pred             hhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHH
Confidence            3456889999999888777665444          79 9999999999986

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PRK06620 hypothetical protein; Validated

Probab=98.66  E-value=6.2e-08  Score=78.21  Aligned_cols=87  Identities=18%  Similarity=0.158  Sum_probs=53.2

Q ss_pred             cc-CCCcHHHHHHHHH-cccccc---cc-----ccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEE
Q 036857           43 WG-PYTGKSSLIAAMA-DLDLKE---FQ-----SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILV  112 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l~~---v~-----~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi  112 (170)
                      || ||||||+++++++ ..+..-   .+     .....++++||+|.+      +..   .+...++.+.+  .+..+++
T Consensus        50 ~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~~~~~~~d~lliDdi~~~------~~~---~lf~l~N~~~e--~g~~ili  118 (214)
T PRK06620         50 KGPSSSGKTYLTKIWQNLSNAYIIKDIFFNEEILEKYNAFIIEDIENW------QEP---ALLHIFNIINE--KQKYLLL  118 (214)
T ss_pred             ECCCCCCHHHHHHHHHhccCCEEcchhhhchhHHhcCCEEEEeccccc------hHH---HHHHHHHHHHh--cCCEEEE
Confidence            89 9999999999998 211111   10     112568999999843      112   34444445544  2345566


Q ss_pred             EeCCCCCC--CCCCCCCCCccc--eEEEcCCCCcc
Q 036857          113 MTTDYKDH--IDPVPLRPSCMD--MHFHLSSHTFR  143 (170)
Q Consensus       113 ~tTN~~~~--lD~AllRpgR~d--~~i~~~~p~~~  143 (170)
                      .++..|..  + ++++  .|+.  ..+++..|+..
T Consensus       119 ts~~~p~~l~l-~~L~--SRl~~gl~~~l~~pd~~  150 (214)
T PRK06620        119 TSSDKSRNFTL-PDLS--SRIKSVLSILLNSPDDE  150 (214)
T ss_pred             EcCCCccccch-HHHH--HHHhCCceEeeCCCCHH
Confidence            65554443  5 6666  4776  57888888873

>CHL00095 clpC Clp protease ATP binding subunit

Probab=98.66  E-value=1e-07  Score=90.24  Aligned_cols=109  Identities=18%  Similarity=0.270  Sum_probs=71.5

Q ss_pred             ccccCChhhHHHhhcCc-------------------cc-CCCcHHHHHHHHH-----------ccccccccc--------
Q 036857           26 NTIATDFDMNKALVDDY-------------------WG-PYTGKSSLIAAMA-----------DLDLKEFQS--------   66 (170)
Q Consensus        26 ~~v~~~~~~k~~l~~~~-------------------~G-PGtGKT~la~aiA-----------~~~l~~v~~--------   66 (170)
                      +.|++++...+.+...+                   +| ||||||++|+++|           .++++....        
T Consensus       509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~  588 (821)
T CHL00095        509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLI  588 (821)
T ss_pred             CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhc
Confidence            45667776666654433                   49 9999999999999           122221100        


Q ss_pred             ---------------------cCceeEeeechhhhccCCccchHHHHHHHHHhhchh-cc------CCCCeEEEEeCCCC
Q 036857           67 ---------------------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLW-SS------SGDGRILVMTTDYK  118 (170)
Q Consensus        67 ---------------------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~-~~------~~~~~~vi~tTN~~  118 (170)
                                           +..+||+|||+|..      .....+.|+..+|.-. ..      .-.+.++|+|||.-
T Consensus       589 g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka------~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g  662 (821)
T CHL00095        589 GSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA------HPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLG  662 (821)
T ss_pred             CCCCcccCcCccchHHHHHHhCCCeEEEECChhhC------CHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcc
Confidence                                 01489999999976      3456778888887421 00      01478999999943


Q ss_pred             CC-------------------------------------CCCCCCCCCccceEEEcCCCCc
Q 036857          119 DH-------------------------------------IDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       119 ~~-------------------------------------lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      ..                                     +.|.|+  +|+|..|.|...+.
T Consensus       663 ~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefl--nRid~ii~F~pL~~  721 (821)
T CHL00095        663 SKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFL--NRLDEIIVFRQLTK  721 (821)
T ss_pred             hHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHh--ccCCeEEEeCCCCH
Confidence            21                                     123455  59999999988887

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=98.64  E-value=1.5e-07  Score=89.46  Aligned_cols=66  Identities=15%  Similarity=0.251  Sum_probs=46.2

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchh-ccC------CCCeEEEEeCCCCC----------------------
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLW-SSS------GDGRILVMTTDYKD----------------------  119 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~-~~~------~~~~~vi~tTN~~~----------------------  119 (170)
                      .+||||||+|..      .....+.|++.+|.-. ...      -.+.+||+|||.-.                      
T Consensus       668 ~~vlllDeieka------~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~  741 (852)
T TIGR03346       668 YSVVLFDEVEKA------HPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEV  741 (852)
T ss_pred             CcEEEEeccccC------CHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHH
Confidence            469999999965      3456777888885321 100      14678999999621                      


Q ss_pred             ---CCCCCCCCCCccceEEEcCCCCc
Q 036857          120 ---HIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       120 ---~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                         .+.|.|+  +|+|..+.|..++.
T Consensus       742 ~~~~F~pel~--~Rid~IivF~PL~~  765 (852)
T TIGR03346       742 LRAHFRPEFL--NRIDEIVVFHPLGR  765 (852)
T ss_pred             HHhhcCHHHh--cCcCeEEecCCcCH
Confidence               1345566  59999999999888

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.64  E-value=9.5e-08  Score=86.14  Aligned_cols=110  Identities=15%  Similarity=0.150  Sum_probs=74.0

Q ss_pred             CcccccCChhhHHHhhcCc--------cc-CCCcHHHHHHHHH----------ccccccccc-----------c------
Q 036857           24 TSNTIATDFDMNKALVDDY--------WG-PYTGKSSLIAAMA----------DLDLKEFQS-----------N------   67 (170)
Q Consensus        24 ~~~~v~~~~~~k~~l~~~~--------~G-PGtGKT~la~aiA----------~~~l~~v~~-----------~------   67 (170)
                      .|.++.+....++.+.-.+        .| ||||||++++.++          .++...+.+           .      
T Consensus       189 d~~~v~Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~  268 (506)
T PRK09862        189 DLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRS  268 (506)
T ss_pred             CeEEEECcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccC
Confidence            5777777776776654333        49 9999999999999          111111100           0      


Q ss_pred             -------------------------CceeEeeechhhhccCCccchHHHHHHHHHhhc-h--------hccCCCCeEEEE
Q 036857           68 -------------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDG-L--------WSSSGDGRILVM  113 (170)
Q Consensus        68 -------------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg-~--------~~~~~~~~~vi~  113 (170)
                                               ...++|+||++.+      ....+..|++.|+. .        ....+.++.+|+
T Consensus       269 ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~------~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIA  342 (506)
T PRK09862        269 PHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEF------ERRTLDALREPIESGQIHLSRTRAKITYPARFQLVA  342 (506)
T ss_pred             CCccchHHHHhCCCceehhhHhhhccCCEEecCCchhC------CHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEE
Confidence                                     0789999999765      34556667766632 1        111245789999


Q ss_pred             eCCCCC---------------------CCCCCCCCCCccceEEEcCCCC
Q 036857          114 TTDYKD---------------------HIDPVPLRPSCMDMHFHLSSHT  141 (170)
Q Consensus       114 tTN~~~---------------------~lD~AllRpgR~d~~i~~~~p~  141 (170)
                      |+|...                     .+..+++  .|||+++++++|+
T Consensus       343 a~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plL--DRfdL~v~v~~~~  389 (506)
T PRK09862        343 AMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFL--DRFDLSLEIPLPP  389 (506)
T ss_pred             eecCccceecCCCCCCcCHHHHHHHHhhCCHhHH--hhccEEEEeCCCC
Confidence            999653                     4666777  6999999999985

>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]

Probab=98.62  E-value=3.1e-07  Score=80.59  Aligned_cols=66  Identities=17%  Similarity=0.179  Sum_probs=52.4

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHH---------hhchhccCCCCeEEEEeCCCCC-CCCCCCCCCCccceEEEcC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKF---------VDGLWSSSGDGRILVMTTDYKD-HIDPVPLRPSCMDMHFHLS  138 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~---------lDg~~~~~~~~~~vi~tTN~~~-~lD~AllRpgR~d~~i~~~  138 (170)
                      ..|+++||+..+-      ...+..||+.         .+|+.-.++.++++|+|+|.-+ .|-|-|+  .||...|...
T Consensus       145 RGIlYvDEvnlL~------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLl--DRfg~~v~~~  216 (423)
T COG1239         145 RGILYVDEVNLLD------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLL--DRFGLEVDTH  216 (423)
T ss_pred             CCEEEEecccccc------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhH--hhhcceeecc
Confidence            7899999997662      3455666654         3677777788999999999554 7777777  6999999999


Q ss_pred             CCCc
Q 036857          139 SHTF  142 (170)
Q Consensus       139 ~p~~  142 (170)
                      +|..
T Consensus       217 ~~~~  220 (423)
T COG1239         217 YPLD  220 (423)
T ss_pred             CCCC
Confidence            9998

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D

Probab=98.58  E-value=1.6e-07  Score=86.14  Aligned_cols=92  Identities=22%  Similarity=0.220  Sum_probs=65.9

Q ss_pred             cc-CCCcHHHHHHHHHc-c----ccccccc-------------------------------cCceeEeeechhhhccCCc
Q 036857           43 WG-PYTGKSSLIAAMAD-L----DLKEFQS-------------------------------NSRSILVIEDAVTSFESNA   85 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA~-~----~l~~v~~-------------------------------~~p~il~iDEiD~~~~~~~   85 (170)
                      .| ||||||++|++++. +    .+..+..                               ....+||+||++.+     
T Consensus        22 ~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl-----   96 (589)
T TIGR02031        22 RARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL-----   96 (589)
T ss_pred             EcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC-----
Confidence            59 99999999999991 0    1111110                               00459999999876     


Q ss_pred             cchHHHHHHHHHhhc---------hhccCCCCeEEEEeCCCCC---CCCCCCCCCCccceEEEcCCCCc
Q 036857           86 YNSVALSALLKFVDG---------LWSSSGDGRILVMTTDYKD---HIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus        86 ~~~~~~~~ll~~lDg---------~~~~~~~~~~vi~tTN~~~---~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                       .....+.|++.|+.         .....+.++.+|+|+|..+   .+.++++.  ||++++.+.++..
T Consensus        97 -~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~  162 (589)
T TIGR02031        97 -DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVAS  162 (589)
T ss_pred             -CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCC
Confidence             34567778887752         2222345678999999776   79999996  9999999998766

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=98.57  E-value=1.6e-07  Score=83.31  Aligned_cols=91  Identities=16%  Similarity=0.266  Sum_probs=57.2

Q ss_pred             cc-CCCcHHHHHHHHH-cc-----cccc---------------ccc-----------cCceeEeeechhhhccCCccchH
Q 036857           43 WG-PYTGKSSLIAAMA-DL-----DLKE---------------FQS-----------NSRSILVIEDAVTSFESNAYNSV   89 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~-----~l~~---------------v~~-----------~~p~il~iDEiD~~~~~~~~~~~   89 (170)
                      || ||||||.|++|+| .+     +...               +..           ..+.+|+|||++.+.+..    .
T Consensus       136 yG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~----~  211 (440)
T PRK14088        136 YGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKT----G  211 (440)
T ss_pred             EcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcH----H
Confidence            89 9999999999999 10     1110               000           127799999999886521    1


Q ss_pred             HHHHHHHHhhchhccCCCCeEEEEeC-CCCCC---CCCCCCCCCcc--ceEEEcCCCCc
Q 036857           90 ALSALLKFVDGLWSSSGDGRILVMTT-DYKDH---IDPVPLRPSCM--DMHFHLSSHTF  142 (170)
Q Consensus        90 ~~~~ll~~lDg~~~~~~~~~~vi~tT-N~~~~---lD~AllRpgR~--d~~i~~~~p~~  142 (170)
                      ....+...++.+...   +..+|+|| +.|..   +++.+..  ||  ...+.+..|+.
T Consensus       212 ~q~elf~~~n~l~~~---~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~  265 (440)
T PRK14088        212 VQTELFHTFNELHDS---GKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDE  265 (440)
T ss_pred             HHHHHHHHHHHHHHc---CCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCH
Confidence            234455666666542   33455555 55554   4556664  55  47888999998

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=2.4e-07  Score=86.27  Aligned_cols=123  Identities=15%  Similarity=0.162  Sum_probs=79.4

Q ss_pred             cc-CCCcHHHHHHHHH---cccc-----ccccccC-------------------ceeEeeechhhhccCC--ccchHHHH
Q 036857           43 WG-PYTGKSSLIAAMA---DLDL-----KEFQSNS-------------------RSILVIEDAVTSFESN--AYNSVALS   92 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA---~~~l-----~~v~~~~-------------------p~il~iDEiD~~~~~~--~~~~~~~~   92 (170)
                      +| ||||||++++++|   ++.+     +++..+.                   |+|||+-.+|.+..++  +...+.++
T Consensus       437 hG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~  516 (953)
T KOG0736|consen  437 HGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLK  516 (953)
T ss_pred             eCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHH
Confidence            59 9999999999999   2222     2221111                   9999999999888632  23333333


Q ss_pred             HHHHHh--hchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhhc
Q 036857           93 ALLKFV--DGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAK  156 (170)
Q Consensus        93 ~ll~~l--Dg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~  156 (170)
                      .+-..+  |-... ....+++++||+..+.+++.+.+  -|-..|.++.|++  +.++++.            ++..+..
T Consensus       517 ~i~~~ls~e~~~~-~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~  593 (953)
T KOG0736|consen  517 VIRHLLSNEDFKF-SCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARK  593 (953)
T ss_pred             HHHHHHhcccccC-CCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHh
Confidence            222222  22222 25689999999999999999986  6777888888888  3333321            2233332


Q ss_pred             -CCCCHHHHHHhh
Q 036857          157 -IQATPAEVPGEL  168 (170)
Q Consensus       157 -~~~s~a~i~~~l  168 (170)
                       ..|+.+++..+.
T Consensus       594 t~gfs~~~L~~l~  606 (953)
T KOG0736|consen  594 TSGFSFGDLEALV  606 (953)
T ss_pred             cCCCCHHHHHHHh
Confidence             357887776654

>PRK05642 DNA replication initiation factor; Validated

Probab=98.54  E-value=4.7e-07  Score=73.82  Aligned_cols=91  Identities=16%  Similarity=0.219  Sum_probs=55.8

Q ss_pred             cc-CCCcHHHHHHHHH----ccccccccc----------------cCceeEeeechhhhccCCccchHHHHHHHHHhhch
Q 036857           43 WG-PYTGKSSLIAAMA----DLDLKEFQS----------------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGL  101 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA----~~~l~~v~~----------------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~  101 (170)
                      || +|||||.|++|++    ..+...++.                ....+|++||++.+.+.    ......|...++..
T Consensus        51 ~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi~~~~~~----~~~~~~Lf~l~n~~  126 (234)
T PRK05642         51 WGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDLDVIAGK----ADWEEALFHLFNRL  126 (234)
T ss_pred             ECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEechhhhcCC----hHHHHHHHHHHHHH
Confidence            79 9999999999998    111111100                01468999999977542    12234566666666


Q ss_pred             hccCCCCeEEEEeCC-CCCC---CCCCCCCCCcc--ceEEEcCCCCc
Q 036857          102 WSSSGDGRILVMTTD-YKDH---IDPVPLRPSCM--DMHFHLSSHTF  142 (170)
Q Consensus       102 ~~~~~~~~~vi~tTN-~~~~---lD~AllRpgR~--d~~i~~~~p~~  142 (170)
                      ..   .+..+++|+| .+..   ..|.+..  |+  -..+.+..|+.
T Consensus       127 ~~---~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~  168 (234)
T PRK05642        127 RD---SGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSD  168 (234)
T ss_pred             Hh---cCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCH
Confidence            54   2344455444 4443   3677775  77  47777788777

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=98.52  E-value=3.2e-07  Score=87.34  Aligned_cols=91  Identities=16%  Similarity=0.234  Sum_probs=59.9

Q ss_pred             cc-CCCcHHHHHHHHH-----------cccccccc-----------------------------ccCceeEeeechhhhc
Q 036857           43 WG-PYTGKSSLIAAMA-----------DLDLKEFQ-----------------------------SNSRSILVIEDAVTSF   81 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-----------~~~l~~v~-----------------------------~~~p~il~iDEiD~~~   81 (170)
                      .| ||||||.+|+++|           .++++...                             .+..+||+|||+|.. 
T Consensus       602 ~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka-  680 (852)
T TIGR03345       602 VGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKA-  680 (852)
T ss_pred             ECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhc-
Confidence            49 9999999999999           12222211                             112789999999865 


Q ss_pred             cCCccchHHHHHHHHHhhchhcc-C------CCCeEEEEeCCCCC-----------------------------CCCCCC
Q 036857           82 ESNAYNSVALSALLKFVDGLWSS-S------GDGRILVMTTDYKD-----------------------------HIDPVP  125 (170)
Q Consensus        82 ~~~~~~~~~~~~ll~~lDg~~~~-~------~~~~~vi~tTN~~~-----------------------------~lD~Al  125 (170)
                           .....+.|++.+|.-.-. .      -.+.++|+|||...                             .+.|+|
T Consensus       681 -----~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEf  755 (852)
T TIGR03345       681 -----HPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAF  755 (852)
T ss_pred             -----CHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHH
Confidence                 335567777777643210 0      14689999999411                             144566


Q ss_pred             CCCCccceEEEcCCCCc
Q 036857          126 LRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       126 lRpgR~d~~i~~~~p~~  142 (170)
                      +  +|+| .|.|...+.
T Consensus       756 l--nRi~-iI~F~pLs~  769 (852)
T TIGR03345       756 L--GRMT-VIPYLPLDD  769 (852)
T ss_pred             h--ccee-EEEeCCCCH
Confidence            6  4888 678877776

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK10865 protein disaggregation chaperone; Provisional

Probab=98.51  E-value=4.1e-07  Score=86.63  Aligned_cols=66  Identities=12%  Similarity=0.222  Sum_probs=46.1

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchh-cc------CCCCeEEEEeCCCC-----------------------
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLW-SS------SGDGRILVMTTDYK-----------------------  118 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~-~~------~~~~~~vi~tTN~~-----------------------  118 (170)
                      .++|+|||+|..      .....+.|++.+|.-. ..      .-.+.++|+|||..                       
T Consensus       671 ~~vLllDEieka------~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~  744 (857)
T PRK10865        671 YSVILLDEVEKA------HPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGV  744 (857)
T ss_pred             CCeEEEeehhhC------CHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHH
Confidence            379999999865      3456777888776321 10      01356899999962                       


Q ss_pred             --CCCCCCCCCCCccceEEEcCCCCc
Q 036857          119 --DHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       119 --~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                        +.+.|+|+  .|+|..+.|..++.
T Consensus       745 ~~~~f~PELl--nRld~iivF~PL~~  768 (857)
T PRK10865        745 VSHNFRPEFI--NRIDEVVVFHPLGE  768 (857)
T ss_pred             HcccccHHHH--HhCCeeEecCCCCH
Confidence              13456777  49999999999888

>smart00763 AAA_PrkA PrkA AAA domain

Probab=98.51  E-value=5.7e-07  Score=77.97  Aligned_cols=65  Identities=11%  Similarity=0.032  Sum_probs=45.9

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhc-------cCCCCeEEEEeCCCC-------CCCCCCCCCCCccceE
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWS-------SSGDGRILVMTTDYK-------DHIDPVPLRPSCMDMH  134 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~-------~~~~~~~vi~tTN~~-------~~lD~AllRpgR~d~~  134 (170)
                      ..|+-|+|+++.      ....+..||+.++.-.-       .-+-+.++|++||..       +...+||++  |+. .
T Consensus       237 rGi~~f~Ei~K~------~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d--R~~-~  307 (361)
T smart00763      237 RGILEFVEMFKA------DIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD--RII-K  307 (361)
T ss_pred             CceEEEeehhcC------CHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhh--ceE-E
Confidence            466666776543      44567778887763221       112346899999976       367899997  998 9


Q ss_pred             EEcCCCCc
Q 036857          135 FHLSSHTF  142 (170)
Q Consensus       135 i~~~~p~~  142 (170)
                      |.++||..
T Consensus       308 i~vpY~l~  315 (361)
T smart00763      308 VKVPYCLR  315 (361)
T ss_pred             EeCCCcCC
Confidence            99999998

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>TIGR00368 Mg chelatase-related protein

Probab=98.50  E-value=3.8e-07  Score=82.18  Aligned_cols=112  Identities=14%  Similarity=0.120  Sum_probs=75.4

Q ss_pred             CCcccccCChhhHHHhhcCc--------cc-CCCcHHHHHHHHHcc----------c---cccc----------c-----
Q 036857           23 ATSNTIATDFDMNKALVDDY--------WG-PYTGKSSLIAAMADL----------D---LKEF----------Q-----   65 (170)
Q Consensus        23 ~~~~~v~~~~~~k~~l~~~~--------~G-PGtGKT~la~aiA~~----------~---l~~v----------~-----   65 (170)
                      ..|+++.++...++.+.-.+        +| ||||||+++++++.+          +   +..+          .     
T Consensus       189 ~d~~dv~Gq~~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~  268 (499)
T TIGR00368       189 LDLKDIKGQQHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFR  268 (499)
T ss_pred             CCHHHhcCcHHHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCcc
Confidence            37899999998888776555        59 999999999999810          0   0000          0     


Q ss_pred             ------------------------ccCceeEeeechhhhccCCccchHHHHHHHHHhhch---------hccCCCCeEEE
Q 036857           66 ------------------------SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGL---------WSSSGDGRILV  112 (170)
Q Consensus        66 ------------------------~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~---------~~~~~~~~~vi  112 (170)
                                              .....+|||||++.+-      ...+..|++.|+.-         ....+.++.+|
T Consensus       269 ~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~------~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlI  342 (499)
T TIGR00368       269 SPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFK------RSVLDALREPIEDGSISISRASAKIFYPARFQLV  342 (499)
T ss_pred             ccccccchhhhhCCccccchhhhhccCCCeEecCChhhCC------HHHHHHHHHHHHcCcEEEEecCcceeccCCeEEE
Confidence                                    0006799999998762      34445555555321         11123578899


Q ss_pred             EeCCCC-----C------------------CCCCCCCCCCccceEEEcCCCCc
Q 036857          113 MTTDYK-----D------------------HIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       113 ~tTN~~-----~------------------~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      +|||.-     .                  .+...++  .|||++++++.++.
T Consensus       343 aa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pll--DR~dl~~~~~~~~~  393 (499)
T TIGR00368       343 AAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFL--DRIDLSVEVPLLPP  393 (499)
T ss_pred             EecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHH--hhCCEEEEEcCCCH
Confidence            999952     1                  4777777  69999999997654

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=98.50  E-value=2.4e-07  Score=72.37  Aligned_cols=77  Identities=22%  Similarity=0.371  Sum_probs=50.2

Q ss_pred             cc-CCCcHHHHHHHHH---cc---------ccccccc----cC-----------------ceeEeeechhhhccCCc---
Q 036857           43 WG-PYTGKSSLIAAMA---DL---------DLKEFQS----NS-----------------RSILVIEDAVTSFESNA---   85 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA---~~---------~l~~v~~----~~-----------------p~il~iDEiD~~~~~~~---   85 (170)
                      .| +|||||.+|+++|   ..         +++....    ..                 ..||||||||......+   
T Consensus         9 ~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~~~~~~~   88 (171)
T PF07724_consen    9 AGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHPSNSGGA   88 (171)
T ss_dssp             ESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSHTTTTCS
T ss_pred             ECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhccccccccc
Confidence            49 9999999999999   21         1222222    11                 56999999999876211   


Q ss_pred             --cchHHHHHHHHHhhchhcc--C-----CCCeEEEEeCCCCC
Q 036857           86 --YNSVALSALLKFVDGLWSS--S-----GDGRILVMTTDYKD  119 (170)
Q Consensus        86 --~~~~~~~~ll~~lDg~~~~--~-----~~~~~vi~tTN~~~  119 (170)
                        ....+.+.||+.+|+-.-.  .     -.+.++|+|+|.-.
T Consensus        89 ~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~  131 (171)
T PF07724_consen   89 DVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA  131 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred             hhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence              1125677788888754321  0     13679999999554

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=98.45  E-value=3.5e-07  Score=78.17  Aligned_cols=106  Identities=23%  Similarity=0.259  Sum_probs=75.7

Q ss_pred             CcccccC-ChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc--------------------------cccc
Q 036857           24 TSNTIAT-DFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL--------------------------DLKE   63 (170)
Q Consensus        24 ~~~~v~~-~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~--------------------------~l~~   63 (170)
                      .|++|.+ ++.+.+.+...+           || ||+|||++|+++| .+                          ++..
T Consensus         3 ~~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~   82 (329)
T PRK08058          3 TWEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHL   82 (329)
T ss_pred             cHHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEE
Confidence            3667777 777777766655           69 9999999999999 10                          1111


Q ss_pred             ccc-----------------------cCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCC
Q 036857           64 FQS-----------------------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDH  120 (170)
Q Consensus        64 v~~-----------------------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~  120 (170)
                      +..                       ....|++|||+|.+      +....+.||..|+.-    ++.+++|++|+.++.
T Consensus        83 i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~------~~~a~NaLLK~LEEP----p~~~~~Il~t~~~~~  152 (329)
T PRK08058         83 VAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM------TASAANSLLKFLEEP----SGGTTAILLTENKHQ  152 (329)
T ss_pred             eccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhh------CHHHHHHHHHHhcCC----CCCceEEEEeCChHh
Confidence            100                       00569999999876      334667888888764    468888889999999


Q ss_pred             CCCCCCCCCccceEEEcCCCCc
Q 036857          121 IDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       121 lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      |-|+++.  |. ..++|..|+.
T Consensus       153 ll~TIrS--Rc-~~i~~~~~~~  171 (329)
T PRK08058        153 ILPTILS--RC-QVVEFRPLPP  171 (329)
T ss_pred             CcHHHHh--hc-eeeeCCCCCH
Confidence            9999875  43 5678888776

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=3.3e-07  Score=85.86  Aligned_cols=91  Identities=22%  Similarity=0.387  Sum_probs=66.1

Q ss_pred             c-CCCcHHHHHHHHH-----------ccccccccccC-----------------------------ceeEeeechhhhcc
Q 036857           44 G-PYTGKSSLIAAMA-----------DLDLKEFQSNS-----------------------------RSILVIEDAVTSFE   82 (170)
Q Consensus        44 G-PGtGKT~la~aiA-----------~~~l~~v~~~~-----------------------------p~il~iDEiD~~~~   82 (170)
                      | .|+|||.+|+++|           .+++++....+                             .|||+||||+.   
T Consensus       528 GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEK---  604 (786)
T COG0542         528 GPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEK---  604 (786)
T ss_pred             CCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhh---
Confidence            9 9999999999999           34555443322                             78999999986   


Q ss_pred             CCccchHHHHHHHHHhhchhccCC-------CCeEEEEeCCCC-C---------------------------CCCCCCCC
Q 036857           83 SNAYNSVALSALLKFVDGLWSSSG-------DGRILVMTTDYK-D---------------------------HIDPVPLR  127 (170)
Q Consensus        83 ~~~~~~~~~~~ll~~lDg~~~~~~-------~~~~vi~tTN~~-~---------------------------~lD~AllR  127 (170)
                         .....++-||+.||.-.-.-+       .+.++|||||-= +                           ...|+|+ 
T Consensus       605 ---AHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFL-  680 (786)
T COG0542         605 ---AHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFL-  680 (786)
T ss_pred             ---cCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHH-
Confidence               456788999999984321111       256899999921 0                           1245666 


Q ss_pred             CCccceEEEcCCCCc
Q 036857          128 PSCMDMHFHLSSHTF  142 (170)
Q Consensus       128 pgR~d~~i~~~~p~~  142 (170)
                       .|+|-.|.|..-+.
T Consensus       681 -NRid~II~F~~L~~  694 (786)
T COG0542         681 -NRIDEIIPFNPLSK  694 (786)
T ss_pred             -hhcccEEeccCCCH
Confidence             49999999998888

>PRK12377 putative replication protein; Provisional

Probab=98.42  E-value=6.5e-07  Score=74.00  Aligned_cols=68  Identities=24%  Similarity=0.255  Sum_probs=44.3

Q ss_pred             cc-CCCcHHHHHHHHH----ccccc-------c----cc-----c----------cCceeEeeechhhhccCCccchHHH
Q 036857           43 WG-PYTGKSSLIAAMA----DLDLK-------E----FQ-----S----------NSRSILVIEDAVTSFESNAYNSVAL   91 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA----~~~l~-------~----v~-----~----------~~p~il~iDEiD~~~~~~~~~~~~~   91 (170)
                      || ||||||.+|.|||    ..+.+       .    +.     .          ....+|+|||+.....    +....
T Consensus       107 ~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~~----s~~~~  182 (248)
T PRK12377        107 SGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRE----TKNEQ  182 (248)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCC----CHHHH
Confidence            79 9999999999999    10100       0    00     0          1178999999965432    22344


Q ss_pred             HHHHHHhhchhccCCCCeEEEEeCCC
Q 036857           92 SALLKFVDGLWSSSGDGRILVMTTDY  117 (170)
Q Consensus        92 ~~ll~~lDg~~~~~~~~~~vi~tTN~  117 (170)
                      ..|.+.+|.-..   ...-+|+|||.
T Consensus       183 ~~l~~ii~~R~~---~~~ptiitSNl  205 (248)
T PRK12377        183 VVLNQIIDRRTA---SMRSVGMLTNL  205 (248)
T ss_pred             HHHHHHHHHHHh---cCCCEEEEcCC
Confidence            566677777653   45677999994

>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=3e-07  Score=81.81  Aligned_cols=36  Identities=22%  Similarity=0.242  Sum_probs=31.8

Q ss_pred             CCCcccccCChhhHHHhhcCc--------cc-CCCcHHHHHHHHH
Q 036857           22 PATSNTIATDFDMNKALVDDY--------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        22 p~~~~~v~~~~~~k~~l~~~~--------~G-PGtGKT~la~aiA   57 (170)
                      ...|.||.+++..|+.++-..        +| |||||||+|+.+.
T Consensus       175 ~~D~~DV~GQ~~AKrAleiAAAGgHnLl~~GpPGtGKTmla~Rl~  219 (490)
T COG0606         175 APDFKDVKGQEQAKRALEIAAAGGHNLLLVGPPGTGKTMLASRLP  219 (490)
T ss_pred             CcchhhhcCcHHHHHHHHHHHhcCCcEEEecCCCCchHHhhhhhc
Confidence            347999999999999987655        79 9999999999998

>PRK07952 DNA replication protein DnaC; Validated

Probab=98.38  E-value=7.9e-07  Score=73.33  Aligned_cols=68  Identities=28%  Similarity=0.285  Sum_probs=42.7

Q ss_pred             cc-CCCcHHHHHHHHH----c-------ccccccc---------c-----------cCceeEeeechhhhccCCccchHH
Q 036857           43 WG-PYTGKSSLIAAMA----D-------LDLKEFQ---------S-----------NSRSILVIEDAVTSFESNAYNSVA   90 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA----~-------~~l~~v~---------~-----------~~p~il~iDEiD~~~~~~~~~~~~   90 (170)
                      || ||||||+++.|||    .       +.+..+.         .           ....+|+|||++....    ....
T Consensus       105 ~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~~----s~~~  180 (244)
T PRK07952        105 SGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQTE----SRYE  180 (244)
T ss_pred             ECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCCC----CHHH
Confidence            79 9999999999999    1       0111110         0           1188999999987532    2222


Q ss_pred             HHHHHHHhhchhccCCCCeEEEEeCCC
Q 036857           91 LSALLKFVDGLWSSSGDGRILVMTTDY  117 (170)
Q Consensus        91 ~~~ll~~lDg~~~~~~~~~~vi~tTN~  117 (170)
                      ...+.+.+|.-..   ...-+|+|||.
T Consensus       181 ~~~l~~Ii~~Ry~---~~~~tiitSNl  204 (244)
T PRK07952        181 KVIINQIVDRRSS---SKRPTGMLTNS  204 (244)
T ss_pred             HHHHHHHHHHHHh---CCCCEEEeCCC
Confidence            2334455666542   46778999994

>PRK09087 hypothetical protein; Validated

Probab=98.36  E-value=1.4e-06  Score=70.85  Aligned_cols=88  Identities=16%  Similarity=0.181  Sum_probs=54.5

Q ss_pred             cc-CCCcHHHHHHHHH-ccccccccc----c------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeE
Q 036857           43 WG-PYTGKSSLIAAMA-DLDLKEFQS----N------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRI  110 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l~~v~~----~------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~  110 (170)
                      || ||+|||+|+++++ ......+..    .      ...+|++||+|.+..    .+   .+|...++.+.+   .+..
T Consensus        50 ~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~~----~~---~~lf~l~n~~~~---~g~~  119 (226)
T PRK09087         50 AGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANAAAEGPVLIEDIDAGGF----DE---TGLFHLINSVRQ---AGTS  119 (226)
T ss_pred             ECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHhhhcCeEEEECCCCCCC----CH---HHHHHHHHHHHh---CCCe
Confidence            89 9999999999998 211111111    0      135788999997621    12   345566666654   2344


Q ss_pred             EEEeCC-CCCC---CCCCCCCCCccc--eEEEcCCCCc
Q 036857          111 LVMTTD-YKDH---IDPVPLRPSCMD--MHFHLSSHTF  142 (170)
Q Consensus       111 vi~tTN-~~~~---lD~AllRpgR~d--~~i~~~~p~~  142 (170)
                      +++|++ .+..   ..+.+.-  |+.  ..+++..|+.
T Consensus       120 ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~  155 (226)
T PRK09087        120 LLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDD  155 (226)
T ss_pred             EEEECCCChHHhccccccHHH--HHhCCceeecCCCCH
Confidence            555554 3432   3566764  776  8889999987

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=98.36  E-value=2.2e-06  Score=81.51  Aligned_cols=65  Identities=14%  Similarity=0.127  Sum_probs=40.3

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCC---CCCCCCCCCCCCccce-EEEcCCCCc
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDY---KDHIDPVPLRPSCMDM-HFHLSSHTF  142 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~---~~~lD~AllRpgR~d~-~i~~~~p~~  142 (170)
                      ..||+|||||.+...   .+..   |.+.++.... .+..+++|+.+|.   ++.++|.+..  |+.. .|.|+.++.
T Consensus       870 v~IIILDEID~L~kK---~QDV---LYnLFR~~~~-s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTa  938 (1164)
T PTZ00112        870 VSILIIDEIDYLITK---TQKV---LFTLFDWPTK-INSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKG  938 (1164)
T ss_pred             ceEEEeehHhhhCcc---HHHH---HHHHHHHhhc-cCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCH
Confidence            469999999999763   2233   3333333222 2457889999984   6677887764  5543 366755554

>PRK08116 hypothetical protein; Validated

Probab=98.36  E-value=7.2e-07  Score=74.34  Aligned_cols=96  Identities=17%  Similarity=0.279  Sum_probs=60.8

Q ss_pred             cc-CCCcHHHHHHHHH----ccc-------c----cccc-----------------ccCceeEeeechhhhccCCccchH
Q 036857           43 WG-PYTGKSSLIAAMA----DLD-------L----KEFQ-----------------SNSRSILVIEDAVTSFESNAYNSV   89 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA----~~~-------l----~~v~-----------------~~~p~il~iDEiD~~~~~~~~~~~   89 (170)
                      || ||||||.||.|+|    ..+       .    ..+.                 .....+|+|||+...    .....
T Consensus       120 ~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e----~~t~~  195 (268)
T PRK08116        120 WGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAE----RDTEW  195 (268)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCC----CCCHH
Confidence            89 9999999999999    001       0    0110                 011679999999532    12344


Q ss_pred             HHHHHHHHhhchhccCCCCeEEEEeCCCC-CC----CCCCCCCCCcc---ceEEEcCCCCcchHHH
Q 036857           90 ALSALLKFVDGLWSSSGDGRILVMTTDYK-DH----IDPVPLRPSCM---DMHFHLSSHTFRHYLF  147 (170)
Q Consensus        90 ~~~~ll~~lDg~~~~~~~~~~vi~tTN~~-~~----lD~AllRpgR~---d~~i~~~~p~~~~~l~  147 (170)
                      ....|.+.+|....   .+..+|+|||.. +.    ++..+.  .|+   -..|.+.-||.+....
T Consensus       196 ~~~~l~~iin~r~~---~~~~~IiTsN~~~~eL~~~~~~ri~--sRl~e~~~~v~~~g~d~R~~~~  256 (268)
T PRK08116        196 AREKVYNIIDSRYR---KGLPTIVTTNLSLEELKNQYGKRIY--DRILEMCTPVENEGKSYRKEIA  256 (268)
T ss_pred             HHHHHHHHHHHHHH---CCCCEEEECCCCHHHHHHHHhHHHH--HHHHHcCEEEEeeCcChhHHHH
Confidence            56677788887754   466789999954 33    455555  354   4567777777744433

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=98.34  E-value=1.1e-06  Score=75.23  Aligned_cols=61  Identities=20%  Similarity=0.193  Sum_probs=49.1

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      ..|++|||+|.+      +....+.||..|+.-    +.++++|++|+.++.|.|.++.  |+.. +.|+.|+.
T Consensus       107 ~kv~iI~~a~~m------~~~aaNaLLK~LEEP----p~~~~fiL~t~~~~~ll~TI~S--Rc~~-~~~~~~~~  167 (328)
T PRK05707        107 RKVVLIEPAEAM------NRNAANALLKSLEEP----SGDTVLLLISHQPSRLLPTIKS--RCQQ-QACPLPSN  167 (328)
T ss_pred             CeEEEECChhhC------CHHHHHHHHHHHhCC----CCCeEEEEEECChhhCcHHHHh--hcee-eeCCCcCH
Confidence            568888999877      446678888888774    4689999999999999999985  6654 88888876

>PRK06526 transposase; Provisional

Probab=98.32  E-value=5.9e-07  Score=74.42  Aligned_cols=68  Identities=16%  Similarity=0.267  Sum_probs=41.4

Q ss_pred             cc-CCCcHHHHHHHHH----ccccccccc-------------------------cCceeEeeechhhhccCCccchHHHH
Q 036857           43 WG-PYTGKSSLIAAMA----DLDLKEFQS-------------------------NSRSILVIEDAVTSFESNAYNSVALS   92 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA----~~~l~~v~~-------------------------~~p~il~iDEiD~~~~~~~~~~~~~~   92 (170)
                      || ||||||.+|.+++    ..+....+.                         ..+.+|+|||++....    ......
T Consensus       104 ~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~~----~~~~~~  179 (254)
T PRK06526        104 LGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIPF----EPEAAN  179 (254)
T ss_pred             EeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCCC----CHHHHH
Confidence            79 9999999999998    111100000                         1178999999986532    122233


Q ss_pred             HHHHHhhchhccCCCCeEEEEeCCCC
Q 036857           93 ALLKFVDGLWSSSGDGRILVMTTDYK  118 (170)
Q Consensus        93 ~ll~~lDg~~~~~~~~~~vi~tTN~~  118 (170)
                      .+.+.++....    ..-+|+|||.+
T Consensus       180 ~L~~li~~r~~----~~s~IitSn~~  201 (254)
T PRK06526        180 LFFQLVSSRYE----RASLIVTSNKP  201 (254)
T ss_pred             HHHHHHHHHHh----cCCEEEEcCCC
Confidence            45555665543    23478888854

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=98.32  E-value=2.2e-06  Score=61.65  Aligned_cols=73  Identities=18%  Similarity=0.380  Sum_probs=43.7

Q ss_pred             cc-CCCcHHHHHHHHH-----cc--c-cccccccC-----------ceeEeeechhhhccCCccchHHHHHHHHHhhch-
Q 036857           43 WG-PYTGKSSLIAAMA-----DL--D-LKEFQSNS-----------RSILVIEDAVTSFESNAYNSVALSALLKFVDGL-  101 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-----~~--~-l~~v~~~~-----------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~-  101 (170)
                      || ||+|||++|+.+|     ..  . -..+....           ..++++||+...-...  .....+.+++.++.. 
T Consensus         4 ~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~~q~vvi~DD~~~~~~~~--~~~~~~~l~~l~s~~~   81 (107)
T PF00910_consen    4 YGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQGQPVVIIDDFGQDNDGY--NYSDESELIRLISSNP   81 (107)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccCCCcEEEEeecCcccccc--chHHHHHHHHHHhcCC
Confidence            79 9999999999998     11  1 12222211           7788999997654321  123566666655432 


Q ss_pred             --------hcc--CCCCeEEEEeCCC
Q 036857          102 --------WSS--SGDGRILVMTTDY  117 (170)
Q Consensus       102 --------~~~--~~~~~~vi~tTN~  117 (170)
                              ...  .-...+||+|||.
T Consensus        82 ~~~~~a~~~~K~~~~~s~~vi~tsN~  107 (107)
T PF00910_consen   82 FQPNMADLEDKGTPFNSKLVIITSNF  107 (107)
T ss_pred             cccccccHhhCCCccCCCEEEEcCCC
Confidence                    210  0113689999984

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=98.30  E-value=5.8e-06  Score=66.84  Aligned_cols=92  Identities=17%  Similarity=0.242  Sum_probs=55.6

Q ss_pred             cc-CCCcHHHHHHHHH----c--ccccccc---------------c----------cCceeEeeechhhhccCCccchHH
Q 036857           43 WG-PYTGKSSLIAAMA----D--LDLKEFQ---------------S----------NSRSILVIEDAVTSFESNAYNSVA   90 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA----~--~~l~~v~---------------~----------~~p~il~iDEiD~~~~~~~~~~~~   90 (170)
                      || +|+|||.|.+|++    .  -+...+.               .          ....+|+|||++.+..    ....
T Consensus        40 ~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~----~~~~  115 (219)
T PF00308_consen   40 YGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAG----KQRT  115 (219)
T ss_dssp             EESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTT----HHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcC----chHH
Confidence            89 9999999999998    1  1111111               0          1178999999998854    2345


Q ss_pred             HHHHHHHhhchhccCCCCeEEEEeCCCCCCCC---CCCCCCCccc--eEEEcCCCCc
Q 036857           91 LSALLKFVDGLWSSSGDGRILVMTTDYKDHID---PVPLRPSCMD--MHFHLSSHTF  142 (170)
Q Consensus        91 ~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD---~AllRpgR~d--~~i~~~~p~~  142 (170)
                      ...+...++.+...  +..+|+.+...|..+.   +-+.  .||.  ..+++..|+.
T Consensus       116 q~~lf~l~n~~~~~--~k~li~ts~~~P~~l~~~~~~L~--SRl~~Gl~~~l~~pd~  168 (219)
T PF00308_consen  116 QEELFHLFNRLIES--GKQLILTSDRPPSELSGLLPDLR--SRLSWGLVVELQPPDD  168 (219)
T ss_dssp             HHHHHHHHHHHHHT--TSEEEEEESS-TTTTTTS-HHHH--HHHHCSEEEEE----H
T ss_pred             HHHHHHHHHHHHhh--CCeEEEEeCCCCccccccChhhh--hhHhhcchhhcCCCCH
Confidence            56677777777652  3455555545767664   3333  3554  5888888888

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK08181 transposase; Validated

Probab=98.30  E-value=1.1e-06  Score=73.36  Aligned_cols=68  Identities=21%  Similarity=0.403  Sum_probs=43.3

Q ss_pred             cc-CCCcHHHHHHHHH----ccccccccc-------------------------cCceeEeeechhhhccCCccchHHHH
Q 036857           43 WG-PYTGKSSLIAAMA----DLDLKEFQS-------------------------NSRSILVIEDAVTSFESNAYNSVALS   92 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA----~~~l~~v~~-------------------------~~p~il~iDEiD~~~~~~~~~~~~~~   92 (170)
                      || ||||||.+|.|+|    ..+...++.                         ..+.+|+|||++....    ......
T Consensus       112 ~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~----~~~~~~  187 (269)
T PRK08181        112 FGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTK----DQAETS  187 (269)
T ss_pred             EecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccC----CHHHHH
Confidence            79 9999999999998    111111110                         1178999999986543    223345


Q ss_pred             HHHHHhhchhccCCCCeEEEEeCCCC
Q 036857           93 ALLKFVDGLWSSSGDGRILVMTTDYK  118 (170)
Q Consensus        93 ~ll~~lDg~~~~~~~~~~vi~tTN~~  118 (170)
                      .|.+.++....    +.-+|+|||.+
T Consensus       188 ~Lf~lin~R~~----~~s~IiTSN~~  209 (269)
T PRK08181        188 VLFELISARYE----RRSILITANQP  209 (269)
T ss_pred             HHHHHHHHHHh----CCCEEEEcCCC
Confidence            56666665543    23588889843

>TIGR00602 rad24 checkpoint protein rad24

Probab=98.28  E-value=4e-06  Score=77.55  Aligned_cols=43  Identities=19%  Similarity=0.105  Sum_probs=37.2

Q ss_pred             ccCCCCCCCCcccccCChhhHHHhhcCc---------------cc-CCCcHHHHHHHHH
Q 036857           15 NSNKFEHPATSNTIATDFDMNKALVDDY---------------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        15 ~~~~~~~p~~~~~v~~~~~~k~~l~~~~---------------~G-PGtGKT~la~aiA   57 (170)
                      .++....|..+++++++++..+++...+               +| ||||||++++++|
T Consensus        73 pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la  131 (637)
T TIGR00602        73 PWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILS  131 (637)
T ss_pred             chHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHH
Confidence            4677999999999999998877766443               69 9999999999999

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=98.26  E-value=7.9e-07  Score=73.45  Aligned_cols=44  Identities=25%  Similarity=0.172  Sum_probs=37.9

Q ss_pred             cccCCCCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH
Q 036857           14 WNSNKFEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        14 w~~~~~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA   57 (170)
                      ..+++..+|..+.+++++++.-+++.-..          -| ||||||+.+.++|
T Consensus        15 l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LA   69 (333)
T KOG0991|consen   15 LPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLA   69 (333)
T ss_pred             chHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHH
Confidence            34889999999999999999988775433          39 9999999999999

>PRK06921 hypothetical protein; Provisional

Probab=98.23  E-value=2.4e-06  Score=71.17  Aligned_cols=76  Identities=14%  Similarity=0.254  Sum_probs=44.7

Q ss_pred             cc-CCCcHHHHHHHHH----cc-cccccccc-----------------------CceeEeeechhh-hccCCccchHHHH
Q 036857           43 WG-PYTGKSSLIAAMA----DL-DLKEFQSN-----------------------SRSILVIEDAVT-SFESNAYNSVALS   92 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA----~~-~l~~v~~~-----------------------~p~il~iDEiD~-~~~~~~~~~~~~~   92 (170)
                      || ||||||.|+.|||    .. +...++..                       ...+|+|||+.. +.+..........
T Consensus       123 ~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~~~~g~e~~t~~~~~  202 (266)
T PRK06921        123 LGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFKPVNGKPRATEWQIE  202 (266)
T ss_pred             ECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCCCccCCHHHHH
Confidence            79 9999999999999    11 21111110                       178999999943 1121112233445


Q ss_pred             HHHHHhhchhccCCCCeEEEEeCCC-CCCC
Q 036857           93 ALLKFVDGLWSSSGDGRILVMTTDY-KDHI  121 (170)
Q Consensus        93 ~ll~~lDg~~~~~~~~~~vi~tTN~-~~~l  121 (170)
                      .|.+.++....   .+.-+|+|||. ++.+
T Consensus       203 ~lf~iin~R~~---~~k~tIitsn~~~~el  229 (266)
T PRK06921        203 QMYSVLNYRYL---NHKPILISSELTIDEL  229 (266)
T ss_pred             HHHHHHHHHHH---CCCCEEEECCCCHHHH
Confidence            56666766653   23446788883 4433

>PTZ00111 DNA replication licensing factor MCM4; Provisional

Probab=98.23  E-value=3.2e-06  Score=80.46  Aligned_cols=92  Identities=14%  Similarity=0.200  Sum_probs=61.1

Q ss_pred             cc-CCCcHHHHHHHHHc----------cccccc--------cc---------------cCceeEeeechhhhccCCccch
Q 036857           43 WG-PYTGKSSLIAAMAD----------LDLKEF--------QS---------------NSRSILVIEDAVTSFESNAYNS   88 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA~----------~~l~~v--------~~---------------~~p~il~iDEiD~~~~~~~~~~   88 (170)
                      +| ||||||.+|++++.          .....+        ..               ....+++|||+|.+-      .
T Consensus       498 vGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms------~  571 (915)
T PTZ00111        498 CGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCH------N  571 (915)
T ss_pred             eCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCC------H
Confidence            59 99999999999981          111110        00               005799999999873      2


Q ss_pred             HHHHHHHHHhh---------chhccCCCCeEEEEeCCCCC-------------CCCCCCCCCCccceEEE-cCCCCc
Q 036857           89 VALSALLKFVD---------GLWSSSGDGRILVMTTDYKD-------------HIDPVPLRPSCMDMHFH-LSSHTF  142 (170)
Q Consensus        89 ~~~~~ll~~lD---------g~~~~~~~~~~vi~tTN~~~-------------~lD~AllRpgR~d~~i~-~~~p~~  142 (170)
                      ...+.|++.|+         |+....+...-||+|+|+.+             .|+++++-  |||..+- ++.|+.
T Consensus       572 ~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~  646 (915)
T PTZ00111        572 ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQ  646 (915)
T ss_pred             HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCCh
Confidence            34455666663         22222345788999999753             57899995  9998754 566776

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=98.21  E-value=8.2e-06  Score=69.54  Aligned_cols=105  Identities=20%  Similarity=0.161  Sum_probs=76.1

Q ss_pred             CcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-----cc----------------cccccc-----
Q 036857           24 TSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-----DL----------------DLKEFQ-----   65 (170)
Q Consensus        24 ~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-----~~----------------~l~~v~-----   65 (170)
                      .|+++++++.+++.+...+           +| +|+||+++|+++|     .-                |+..+.     
T Consensus         2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~   81 (314)
T PRK07399          2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH   81 (314)
T ss_pred             cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence            5889999999999988877           59 9999999999999     10                001000     


Q ss_pred             -c---------------c------------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccC
Q 036857           66 -S---------------N------------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSS  105 (170)
Q Consensus        66 -~---------------~------------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~  105 (170)
                       .               +                        ...|++||++|.+      +....+.||..|+.-    
T Consensus        82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m------~~~aaNaLLK~LEEP----  151 (314)
T PRK07399         82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM------NEAAANALLKTLEEP----  151 (314)
T ss_pred             cccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc------CHHHHHHHHHHHhCC----
Confidence             0               0                        0567777777765      334567788877653    


Q ss_pred             CCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          106 GDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       106 ~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      + +.++|++|+.++.|-|.++.  |. ..++|..++.
T Consensus       152 p-~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~  184 (314)
T PRK07399        152 G-NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSD  184 (314)
T ss_pred             C-CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCH
Confidence            3 55778888899999999885  54 6788888877

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=98.20  E-value=4.1e-06  Score=74.16  Aligned_cols=95  Identities=16%  Similarity=0.154  Sum_probs=61.9

Q ss_pred             ceeEeeechhhhccCCc------cchHHHHHHHHHhhchhccC------CCCeEEEEeCC----CCCCCCCCCCCCCccc
Q 036857           69 RSILVIEDAVTSFESNA------YNSVALSALLKFVDGLWSSS------GDGRILVMTTD----YKDHIDPVPLRPSCMD  132 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~------~~~~~~~~ll~~lDg~~~~~------~~~~~vi~tTN----~~~~lD~AllRpgR~d  132 (170)
                      ..||||||||.++...+      ...-+...||..++|..-..      ..++++|++-.    .|++|-|.|+  |||-
T Consensus       250 ~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~P  327 (443)
T PRK05201        250 NGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFP  327 (443)
T ss_pred             CCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--Cccc
Confidence            67999999999996321      11235667888888743211      23566666433    5677788888  8999


Q ss_pred             eEEEcCCCCc----------chHHHHHHHHHhhcCC----CCHHHHH
Q 036857          133 MHFHLSSHTF----------RHYLFEKIEERLAKIQ----ATPAEVP  165 (170)
Q Consensus       133 ~~i~~~~p~~----------~~~l~~~~~~~~~~~~----~s~a~i~  165 (170)
                      .++++...+.          +..+..+.+.++...+    ||.+.+.
T Consensus       328 i~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~  374 (443)
T PRK05201        328 IRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIR  374 (443)
T ss_pred             eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHH
Confidence            9999999888          3445555555554332    5555444

>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]

Probab=98.20  E-value=2e-06  Score=73.40  Aligned_cols=103  Identities=17%  Similarity=0.171  Sum_probs=73.7

Q ss_pred             ccCCCCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH--------------ccccc-------
Q 036857           15 NSNKFEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA--------------DLDLK-------   62 (170)
Q Consensus        15 ~~~~~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA--------------~~~l~-------   62 (170)
                      .+++..+|..+++++.+.++-..+.+..          || ||||||+...+.|              +++.+       
T Consensus        30 pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~  109 (360)
T KOG0990|consen   30 PWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDP  109 (360)
T ss_pred             CCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCcc
Confidence            4667899999999999988877665544          89 9999999999999              11110       


Q ss_pred             --------------ccccc--CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCC
Q 036857           63 --------------EFQSN--SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPL  126 (170)
Q Consensus        63 --------------~v~~~--~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~All  126 (170)
                                    .++.+  .+..+++||.|.+..      ...++|-..+...    ..++-++.-+|++..+-||+.
T Consensus       110 vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~------~AQnALRRviek~----t~n~rF~ii~n~~~ki~pa~q  179 (360)
T KOG0990|consen  110 VRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR------DAQNALRRVIEKY----TANTRFATISNPPQKIHPAQQ  179 (360)
T ss_pred             hHHHHHHHHhhccceeccccCceeEEEecchhHhhH------HHHHHHHHHHHHh----ccceEEEEeccChhhcCchhh
Confidence                          12222  377999999998743      3334444433333    457777788999999999997


Q ss_pred             C
Q 036857          127 R  127 (170)
Q Consensus       127 R  127 (170)
                      .
T Consensus       180 s  180 (360)
T KOG0990|consen  180 S  180 (360)
T ss_pred             c
Confidence            4

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=98.20  E-value=2.3e-06  Score=79.43  Aligned_cols=120  Identities=15%  Similarity=0.135  Sum_probs=76.2

Q ss_pred             ccCCCCCCCCcccccCChhhHHHhhcCc--------------------------------------------cc-CCCcH
Q 036857           15 NSNKFEHPATSNTIATDFDMNKALVDDY--------------------------------------------WG-PYTGK   49 (170)
Q Consensus        15 ~~~~~~~p~~~~~v~~~~~~k~~l~~~~--------------------------------------------~G-PGtGK   49 (170)
                      .||+...|..|-++..++.+-+.++..+                                            .| ||-||
T Consensus       260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK  339 (877)
T KOG1969|consen  260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK  339 (877)
T ss_pred             eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence            4677888888888888888877777666                                            29 99999


Q ss_pred             HHHHHHHH-cccccccccc----------------------------CceeEeeechhhhccCCccchHHHHHHHHHhh-
Q 036857           50 SSLIAAMA-DLDLKEFQSN----------------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVD-   99 (170)
Q Consensus        50 T~la~aiA-~~~l~~v~~~----------------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lD-   99 (170)
                      |+||+.|| ..+++.+..|                            .|..|++||||--      ....+..++..+. 
T Consensus       340 TTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa------~~~~Vdvilslv~a  413 (877)
T KOG1969|consen  340 TTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA------PRAAVDVILSLVKA  413 (877)
T ss_pred             hHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCC------cHHHHHHHHHHHHh
Confidence            99999999 1121111111                            1999999999843      3444455554443 


Q ss_pred             -chhccCCC---------------CeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          100 -GLWSSSGD---------------GRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       100 -g~~~~~~~---------------~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                       +-....+.               -+-||+-+|...  -|||.----+-..|+|..|..
T Consensus       414 ~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~  470 (877)
T KOG1969|consen  414 TNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQ  470 (877)
T ss_pred             hcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCCh
Confidence             11100001               134777777543  466631115888899988887

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=98.18  E-value=4e-06  Score=65.33  Aligned_cols=43  Identities=9%  Similarity=0.086  Sum_probs=26.5

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhch-hcc------CCCCeEEEEeCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGL-WSS------SGDGRILVMTTDY  117 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~-~~~------~~~~~~vi~tTN~  117 (170)
                      ...|||||||.+-.      .....|++.|+.- ...      ..-++-+|+|||.
T Consensus        94 ~GtL~Ld~I~~L~~------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~  143 (168)
T PF00158_consen   94 GGTLFLDEIEDLPP------ELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK  143 (168)
T ss_dssp             TSEEEEETGGGS-H------HHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred             ceEEeecchhhhHH------HHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence            78999999998743      4556677766621 111      1226778888874

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=98.17  E-value=7.5e-06  Score=75.48  Aligned_cols=35  Identities=26%  Similarity=0.258  Sum_probs=30.0

Q ss_pred             CCcccccCChhhHHHhhcCc--------cc-CCCcHHHHHHHHH
Q 036857           23 ATSNTIATDFDMNKALVDDY--------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        23 ~~~~~v~~~~~~k~~l~~~~--------~G-PGtGKT~la~aiA   57 (170)
                      ..+++++++++.++.+...+        +| ||||||++++++|
T Consensus        15 ~~~~~viG~~~a~~~l~~a~~~~~~~ll~G~pG~GKT~la~~la   58 (608)
T TIGR00764        15 RLIDQVIGQEEAVEIIKKAAKQKRNVLLIGEPGVGKSMLAKAMA   58 (608)
T ss_pred             hhHhhccCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHH
Confidence            46889999999888776544        69 9999999999999

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>PRK13406 bchD magnesium chelatase subunit D; Provisional

Probab=98.16  E-value=1.8e-05  Score=72.62  Aligned_cols=66  Identities=17%  Similarity=0.119  Sum_probs=51.8

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhh---------chhccCCCCeEEEEeCCCC---CCCCCCCCCCCccceEEE
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVD---------GLWSSSGDGRILVMTTDYK---DHIDPVPLRPSCMDMHFH  136 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lD---------g~~~~~~~~~~vi~tTN~~---~~lD~AllRpgR~d~~i~  136 (170)
                      ..|||+||+..+      ...+++.|++.|+         |.....+...++|+|-|..   +.|.++++  .||++++.
T Consensus        94 ~GvL~lDe~n~~------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lL--DRf~l~v~  165 (584)
T PRK13406         94 GGVLVLAMAERL------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALA--DRLAFHLD  165 (584)
T ss_pred             CCEEEecCcccC------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhH--hheEEEEE
Confidence            689999999754      5678888888874         4444456678888876543   56899999  79999999


Q ss_pred             cCCCCc
Q 036857          137 LSSHTF  142 (170)
Q Consensus       137 ~~~p~~  142 (170)
                      +++|+.
T Consensus       166 v~~~~~  171 (584)
T PRK13406        166 LDGLAL  171 (584)
T ss_pred             cCCCCh
Confidence            999886

>PRK08939 primosomal protein DnaI; Reviewed

Probab=98.16  E-value=4.3e-06  Score=71.03  Aligned_cols=69  Identities=22%  Similarity=0.299  Sum_probs=41.6

Q ss_pred             cc-CCCcHHHHHHHHH----ccccc-----------ccc---c-----------cCceeEeeechhhhccCCccchHHHH
Q 036857           43 WG-PYTGKSSLIAAMA----DLDLK-----------EFQ---S-----------NSRSILVIEDAVTSFESNAYNSVALS   92 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA----~~~l~-----------~v~---~-----------~~p~il~iDEiD~~~~~~~~~~~~~~   92 (170)
                      || ||||||.|+.|+|    ..+.+           .+.   .           ....+|+|||+..-.    .+.....
T Consensus       162 ~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e~----~s~~~~~  237 (306)
T PRK08939        162 YGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKEAPVLMLDDIGAEQ----MSSWVRD  237 (306)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcCCCEEEEecCCCcc----ccHHHHH
Confidence            79 9999999999999    11110           010   0           018899999995431    1222233


Q ss_pred             HHHHHh-hchhccCCCCeEEEEeCCCC
Q 036857           93 ALLKFV-DGLWSSSGDGRILVMTTDYK  118 (170)
Q Consensus        93 ~ll~~l-Dg~~~~~~~~~~vi~tTN~~  118 (170)
                      .++..+ +.-.   .++.-+|+|||..
T Consensus       238 ~ll~~Il~~R~---~~~~~ti~TSNl~  261 (306)
T PRK08939        238 EVLGVILQYRM---QEELPTFFTSNFD  261 (306)
T ss_pred             HHHHHHHHHHH---HCCCeEEEECCCC
Confidence            455543 4432   2467889999944

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=98.16  E-value=4.8e-06  Score=64.29  Aligned_cols=49  Identities=20%  Similarity=0.286  Sum_probs=38.5

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLR  127 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllR  127 (170)
                      .-|++|||+|.+      .....++||..|+.-    +.++++|++|+.++.|-|.++.
T Consensus       103 ~KviiI~~ad~l------~~~a~NaLLK~LEep----p~~~~fiL~t~~~~~il~TI~S  151 (162)
T PF13177_consen  103 YKVIIIDEADKL------TEEAQNALLKTLEEP----PENTYFILITNNPSKILPTIRS  151 (162)
T ss_dssp             SEEEEEETGGGS-------HHHHHHHHHHHHST----TTTEEEEEEES-GGGS-HHHHT
T ss_pred             ceEEEeehHhhh------hHHHHHHHHHHhcCC----CCCEEEEEEECChHHChHHHHh
Confidence            679999999976      446678899988776    4689999999999998888874

...

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=98.16  E-value=5.4e-06  Score=73.88  Aligned_cols=91  Identities=16%  Similarity=0.292  Sum_probs=56.4

Q ss_pred             cc-CCCcHHHHHHHHHc-c-----cccc---------------ccc------------cCceeEeeechhhhccCCccch
Q 036857           43 WG-PYTGKSSLIAAMAD-L-----DLKE---------------FQS------------NSRSILVIEDAVTSFESNAYNS   88 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA~-~-----~l~~---------------v~~------------~~p~il~iDEiD~~~~~~~~~~   88 (170)
                      || ||||||.|++|++. +     +...               +..            ....+|+|||++.+...    .
T Consensus       147 ~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k----~  222 (450)
T PRK14087        147 YGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYK----E  222 (450)
T ss_pred             ECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccCC----H
Confidence            79 99999999999980 0     0100               000            11679999999977441    2


Q ss_pred             HHHHHHHHHhhchhccCCCCeEEEEeCC-CCC---CCCCCCCCCCccc--eEEEcCCCCc
Q 036857           89 VALSALLKFVDGLWSSSGDGRILVMTTD-YKD---HIDPVPLRPSCMD--MHFHLSSHTF  142 (170)
Q Consensus        89 ~~~~~ll~~lDg~~~~~~~~~~vi~tTN-~~~---~lD~AllRpgR~d--~~i~~~~p~~  142 (170)
                      .....|...++.+..   .+.-+|+|+| .|+   .+++.+..  ||.  ..+.+..|+.
T Consensus       223 ~~~e~lf~l~N~~~~---~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~  277 (450)
T PRK14087        223 KTNEIFFTIFNNFIE---NDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDN  277 (450)
T ss_pred             HHHHHHHHHHHHHHH---cCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCH
Confidence            334455555665554   2334666666 443   34666664  774  6777888887

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=98.14  E-value=7.6e-06  Score=68.20  Aligned_cols=61  Identities=18%  Similarity=0.184  Sum_probs=44.2

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      .-|+++||+|.+..      ...+.++..+.--    +.+..+|++||.++.+-+-+..  |+ ..+.|..|+.
T Consensus       110 ~kviiidead~mt~------~A~nallk~lEep----~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~  170 (325)
T COG0470         110 YKVVIIDEADKLTE------DAANALLKTLEEP----PKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSR  170 (325)
T ss_pred             ceEEEeCcHHHHhH------HHHHHHHHHhccC----CCCeEEEEEcCChhhccchhhh--cc-eeeecCCchH
Confidence            57999999998844      4456666655443    5688999999999988887764  33 4677776666

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=98.13  E-value=6.7e-06  Score=72.77  Aligned_cols=95  Identities=12%  Similarity=0.143  Sum_probs=62.2

Q ss_pred             ceeEeeechhhhccCCc------cchHHHHHHHHHhhchhccC------CCCeEEEEeCC----CCCCCCCCCCCCCccc
Q 036857           69 RSILVIEDAVTSFESNA------YNSVALSALLKFVDGLWSSS------GDGRILVMTTD----YKDHIDPVPLRPSCMD  132 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~------~~~~~~~~ll~~lDg~~~~~------~~~~~vi~tTN----~~~~lD~AllRpgR~d  132 (170)
                      ..||||||||.++....      ...-+...||..++|..-..      ..++++|++-.    .|.+|=|.|.  |||-
T Consensus       248 ~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~P  325 (441)
T TIGR00390       248 SGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFP  325 (441)
T ss_pred             CCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--Cccc
Confidence            67999999999996321      11235677888888753221      13556666543    5667778888  8999


Q ss_pred             eEEEcCCCCc----------chHHHHHHHHHhhcCC----CCHHHHH
Q 036857          133 MHFHLSSHTF----------RHYLFEKIEERLAKIQ----ATPAEVP  165 (170)
Q Consensus       133 ~~i~~~~p~~----------~~~l~~~~~~~~~~~~----~s~a~i~  165 (170)
                      .++++...+.          +..+..+.++++...+    ||...+.
T Consensus       326 i~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~  372 (441)
T TIGR00390       326 IRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIK  372 (441)
T ss_pred             eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHH
Confidence            9999999988          3345555665554332    4554443

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=5.6e-06  Score=77.79  Aligned_cols=110  Identities=17%  Similarity=0.193  Sum_probs=69.8

Q ss_pred             CcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH------------------cccccccccc-------
Q 036857           24 TSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA------------------DLDLKEFQSN-------   67 (170)
Q Consensus        24 ~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA------------------~~~l~~v~~~-------   67 (170)
                      .+|-|++-++-.+++...+          .| ||+|||.++..+|                  .+++..+...       
T Consensus       168 klDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeF  247 (786)
T COG0542         168 KLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEF  247 (786)
T ss_pred             CCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcH
Confidence            3566666666666565555          59 9999999999999                  2333332221       


Q ss_pred             --------------CceeEeeechhhhccCCccc--hHHHHHHHH-HhhchhccCCCCeEEEEeCCC-----CCCCCCCC
Q 036857           68 --------------SRSILVIEDAVTSFESNAYN--SVALSALLK-FVDGLWSSSGDGRILVMTTDY-----KDHIDPVP  125 (170)
Q Consensus        68 --------------~p~il~iDEiD~~~~~~~~~--~~~~~~ll~-~lDg~~~~~~~~~~vi~tTN~-----~~~lD~Al  125 (170)
                                    .+.||||||++.+.+.+...  ....+.+|. .+-      ....-+|+||..     .=.-|+||
T Consensus       248 EeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA------RGeL~~IGATT~~EYRk~iEKD~AL  321 (786)
T COG0542         248 EERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA------RGELRCIGATTLDEYRKYIEKDAAL  321 (786)
T ss_pred             HHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh------cCCeEEEEeccHHHHHHHhhhchHH
Confidence                          18999999999999843321  122333333 221      124445555542     22569999


Q ss_pred             CCCCccceEEEcCCCCc
Q 036857          126 LRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       126 lRpgR~d~~i~~~~p~~  142 (170)
                      -|  || ..|.+.-|+.
T Consensus       322 ~R--RF-Q~V~V~EPs~  335 (786)
T COG0542         322 ER--RF-QKVLVDEPSV  335 (786)
T ss_pred             Hh--cC-ceeeCCCCCH
Confidence            98  88 5788999998

>PRK06964 DNA polymerase III subunit delta'; Validated

Probab=98.12  E-value=7.4e-06  Score=70.69  Aligned_cols=61  Identities=21%  Similarity=0.269  Sum_probs=47.0

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      ..|++||++|.+      +....+.||..|+.-    +.++++|++|++++.|.|.++.  |+ ..+.|+.|+.
T Consensus       133 ~kV~iI~~ae~m------~~~AaNaLLKtLEEP----p~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~  193 (342)
T PRK06964        133 ARVVVLYPAEAL------NVAAANALLKTLEEP----PPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAP  193 (342)
T ss_pred             ceEEEEechhhc------CHHHHHHHHHHhcCC----CcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCH
Confidence            335555666554      345678899988854    5789999999999999999886  66 6889998877

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=9.1e-06  Score=70.71  Aligned_cols=65  Identities=12%  Similarity=0.165  Sum_probs=41.2

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCC---CCCCCCCCCCCcc-ceEEEcCCCCc
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYK---DHIDPVPLRPSCM-DMHFHLSSHTF  142 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~---~~lD~AllRpgR~-d~~i~~~~p~~  142 (170)
                      ..||++||+|.+....+   ..+-.|+..-+..    ...+.+|+.+|..   +.+|+-+..  |+ ...|.|+.-+.
T Consensus       124 ~~IvvLDEid~L~~~~~---~~LY~L~r~~~~~----~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a  192 (366)
T COG1474         124 TVIVILDEVDALVDKDG---EVLYSLLRAPGEN----KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTA  192 (366)
T ss_pred             eEEEEEcchhhhccccc---hHHHHHHhhcccc----ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCH
Confidence            78999999999987433   3333333322222    3467889999854   588887763  32 23477776665

>PRK06835 DNA replication protein DnaC; Validated

Probab=98.11  E-value=5e-06  Score=71.37  Aligned_cols=68  Identities=24%  Similarity=0.360  Sum_probs=44.8

Q ss_pred             cc-CCCcHHHHHHHHH----ccc--------------cccc-cc------------cCceeEeeechhhhccCCccchHH
Q 036857           43 WG-PYTGKSSLIAAMA----DLD--------------LKEF-QS------------NSRSILVIEDAVTSFESNAYNSVA   90 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA----~~~--------------l~~v-~~------------~~p~il~iDEiD~~~~~~~~~~~~   90 (170)
                      || ||||||.||.|||    +.+              +... +.            ....+|+|||+....    .....
T Consensus       189 ~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~----~t~~~  264 (329)
T PRK06835        189 YGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEK----ITEFS  264 (329)
T ss_pred             ECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCC----CCHHH
Confidence            79 9999999999999    100              1000 00            116899999996542    23445


Q ss_pred             HHHHHHHhhchhccCCCCeEEEEeCCC
Q 036857           91 LSALLKFVDGLWSSSGDGRILVMTTDY  117 (170)
Q Consensus        91 ~~~ll~~lDg~~~~~~~~~~vi~tTN~  117 (170)
                      .+.|.+.++....   .+.-+|+|||.
T Consensus       265 ~~~Lf~iin~R~~---~~k~tIiTSNl  288 (329)
T PRK06835        265 KSELFNLINKRLL---RQKKMIISTNL  288 (329)
T ss_pred             HHHHHHHHHHHHH---CCCCEEEECCC
Confidence            5677777777654   34567888884

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=7.3e-06  Score=70.25  Aligned_cols=75  Identities=23%  Similarity=0.271  Sum_probs=48.9

Q ss_pred             c-CCCcHHHHHHHHH---ccccccccccC------------------------------ceeEeeechhhhccCC-----
Q 036857           44 G-PYTGKSSLIAAMA---DLDLKEFQSNS------------------------------RSILVIEDAVTSFESN-----   84 (170)
Q Consensus        44 G-PGtGKT~la~aiA---~~~l~~v~~~~------------------------------p~il~iDEiD~~~~~~-----   84 (170)
                      | -|+|||+||+.+|   ++++.-...+.                              ..||++||||.+....     
T Consensus       104 GPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SI  183 (408)
T COG1219         104 GPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSI  183 (408)
T ss_pred             CCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCc
Confidence            9 9999999999999   22222111111                              8899999999999721     


Q ss_pred             --c-cchHHHHHHHHHhhchhccCC---------CCeEEEEeCCCC
Q 036857           85 --A-YNSVALSALLKFVDGLWSSSG---------DGRILVMTTDYK  118 (170)
Q Consensus        85 --~-~~~~~~~~ll~~lDg~~~~~~---------~~~~vi~tTN~~  118 (170)
                        . ...-+..+||..+.|...+-+         .+.+-|-|||=.
T Consensus       184 TRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NIL  229 (408)
T COG1219         184 TRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNIL  229 (408)
T ss_pred             ccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEccccee
Confidence              1 222356678899987753222         235666677743

>PRK09183 transposase/IS protein; Provisional

Probab=98.09  E-value=6.1e-06  Score=68.43  Aligned_cols=68  Identities=13%  Similarity=0.239  Sum_probs=42.1

Q ss_pred             cc-CCCcHHHHHHHHH------cc-----cccc----------------cc---ccCceeEeeechhhhccCCccchHHH
Q 036857           43 WG-PYTGKSSLIAAMA------DL-----DLKE----------------FQ---SNSRSILVIEDAVTSFESNAYNSVAL   91 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA------~~-----~l~~----------------v~---~~~p~il~iDEiD~~~~~~~~~~~~~   91 (170)
                      || ||||||++|.+++      +.     ....                +.   ...+.++++||++....    .....
T Consensus       108 ~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~~~----~~~~~  183 (259)
T PRK09183        108 LGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPF----SQEEA  183 (259)
T ss_pred             EeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccCCC----ChHHH
Confidence            79 9999999999997      10     0000                01   11278999999976432    22333


Q ss_pred             HHHHHHhhchhccCCCCeEEEEeCCCC
Q 036857           92 SALLKFVDGLWSSSGDGRILVMTTDYK  118 (170)
Q Consensus        92 ~~ll~~lDg~~~~~~~~~~vi~tTN~~  118 (170)
                      ..|.+.++.....   + -+|+|||.+
T Consensus       184 ~~lf~li~~r~~~---~-s~iiTsn~~  206 (259)
T PRK09183        184 NLFFQVIAKRYEK---G-SMILTSNLP  206 (259)
T ss_pred             HHHHHHHHHHHhc---C-cEEEecCCC
Confidence            4566667666542   2 368889843

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=98.07  E-value=3.2e-06  Score=66.36  Aligned_cols=68  Identities=21%  Similarity=0.384  Sum_probs=41.0

Q ss_pred             cc-CCCcHHHHHHHHH----ccccccc--------------ccc-----------CceeEeeechhhhccCCccchHHHH
Q 036857           43 WG-PYTGKSSLIAAMA----DLDLKEF--------------QSN-----------SRSILVIEDAVTSFESNAYNSVALS   92 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA----~~~l~~v--------------~~~-----------~p~il~iDEiD~~~~~~~~~~~~~~   92 (170)
                      +| ||||||.+|.|+|    ..+.+..              ..+           ...+|+|||+-..    ........
T Consensus        53 ~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~----~~~~~~~~  128 (178)
T PF01695_consen   53 YGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYE----PLSEWEAE  128 (178)
T ss_dssp             EESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS-------HHHHH
T ss_pred             EhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccccEeccccccee----eecccccc
Confidence            69 9999999999999    1111000              000           0889999999432    12334455


Q ss_pred             HHHHHhhchhccCCCCeEEEEeCCCC
Q 036857           93 ALLKFVDGLWSSSGDGRILVMTTDYK  118 (170)
Q Consensus        93 ~ll~~lDg~~~~~~~~~~vi~tTN~~  118 (170)
                      .+.+.+|.-..    +.-+|+|||..
T Consensus       129 ~l~~ii~~R~~----~~~tIiTSN~~  150 (178)
T PF01695_consen  129 LLFEIIDERYE----RKPTIITSNLS  150 (178)
T ss_dssp             CTHHHHHHHHH----T-EEEEEESS-
T ss_pred             cchhhhhHhhc----ccCeEeeCCCc
Confidence            56677777764    23577799944

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite

Probab=98.05  E-value=4.2e-06  Score=71.70  Aligned_cols=92  Identities=22%  Similarity=0.211  Sum_probs=53.9

Q ss_pred             cc-CCCcHHHHHHHHHc---------------ccc--ccccc----c-----------CceeEeeechhhhccCCccchH
Q 036857           43 WG-PYTGKSSLIAAMAD---------------LDL--KEFQS----N-----------SRSILVIEDAVTSFESNAYNSV   89 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA~---------------~~l--~~v~~----~-----------~p~il~iDEiD~~~~~~~~~~~   89 (170)
                      .| ||||||.+.+.++.               .++  .....    .           ...|.+|||+|.+-.      .
T Consensus        63 vGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~------~  136 (331)
T PF00493_consen   63 VGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKE------D  136 (331)
T ss_dssp             ECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--C------H
T ss_pred             ccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccc------h
Confidence            49 99999999999881               111  11111    0           088999999998733      3


Q ss_pred             HHHHHHHHhhc---------hhccCCCCeEEEEeCCCCC-------------CCCCCCCCCCccceEEEc-CCCCc
Q 036857           90 ALSALLKFVDG---------LWSSSGDGRILVMTTDYKD-------------HIDPVPLRPSCMDMHFHL-SSHTF  142 (170)
Q Consensus        90 ~~~~ll~~lDg---------~~~~~~~~~~vi~tTN~~~-------------~lD~AllRpgR~d~~i~~-~~p~~  142 (170)
                      ....+++.|+.         +....+...-|++|+|+..             .++++++.  |||..+.+ +.|+.
T Consensus       137 ~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~  210 (331)
T PF00493_consen  137 DRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDE  210 (331)
T ss_dssp             HHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-
T ss_pred             HHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEecccccc
Confidence            35666677653         2221233567999999776             58999995  99999876 44554

; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=98.04  E-value=3.3e-05  Score=65.98  Aligned_cols=66  Identities=14%  Similarity=0.022  Sum_probs=38.6

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchh-c------cCCCCeEEEEeCCCC-------CCCCCCCCCCCcc-ce
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLW-S------SSGDGRILVMTTDYK-------DHIDPVPLRPSCM-DM  133 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~-~------~~~~~~~vi~tTN~~-------~~lD~AllRpgR~-d~  133 (170)
                      ...|||||+|.+-.      .....|++.++.-. .      ....++-+|+||+..       ..+.+.|..  || ..
T Consensus       101 gGtL~l~~i~~L~~------~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~  172 (326)
T PRK11608        101 GGTLFLDELATAPM------LVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFD  172 (326)
T ss_pred             CCeEEeCChhhCCH------HHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCC
Confidence            56899999998733      34455666664321 1      111257788888742       344455554  66 45


Q ss_pred             EEEcCCCCc
Q 036857          134 HFHLSSHTF  142 (170)
Q Consensus       134 ~i~~~~p~~  142 (170)
                      .|++|.--.
T Consensus       173 ~i~lPpLRe  181 (326)
T PRK11608        173 VVQLPPLRE  181 (326)
T ss_pred             EEECCChhh
Confidence            677765544

>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional

Probab=98.02  E-value=3.5e-05  Score=71.09  Aligned_cols=89  Identities=20%  Similarity=0.140  Sum_probs=52.2

Q ss_pred             CcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH-----------cccc---------ccccc----
Q 036857           24 TSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA-----------DLDL---------KEFQS----   66 (170)
Q Consensus        24 ~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA-----------~~~l---------~~v~~----   66 (170)
                      +|+++++....-+++...+            +| |||||+++|++|.           .++.         +.++.    
T Consensus       323 ~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~~  402 (638)
T PRK11388        323 TFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDRT  402 (638)
T ss_pred             cccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCCc
Confidence            5777776554444343333            69 9999999999997           1111         11111    


Q ss_pred             ------------cCceeEeeechhhhccCCccchHHHHHHHHHhhchh-ccCC------CCeEEEEeCCCC
Q 036857           67 ------------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLW-SSSG------DGRILVMTTDYK  118 (170)
Q Consensus        67 ------------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~-~~~~------~~~~vi~tTN~~  118 (170)
                                  .....|||||||.+-.      .....|+..++.-. ...+      -++-+|+|||..
T Consensus       403 ~~~~~~~g~~~~a~~GtL~ldei~~l~~------~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~  467 (638)
T PRK11388        403 DSENGRLSKFELAHGGTLFLEKVEYLSP------ELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTAD  467 (638)
T ss_pred             CccCCCCCceeECCCCEEEEcChhhCCH------HHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCC
Confidence                        1167899999998733      34455666664321 1001      146688888843

>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]

Probab=98.01  E-value=1.3e-05  Score=73.99  Aligned_cols=94  Identities=17%  Similarity=0.183  Sum_probs=61.8

Q ss_pred             c-CCCcHHHHHHHHH----------ccccccccccC----------------------ceeEeeechhhhccCCccchHH
Q 036857           44 G-PYTGKSSLIAAMA----------DLDLKEFQSNS----------------------RSILVIEDAVTSFESNAYNSVA   90 (170)
Q Consensus        44 G-PGtGKT~la~aiA----------~~~l~~v~~~~----------------------p~il~iDEiD~~~~~~~~~~~~   90 (170)
                      | ||||||.+.+.++          +.+-+.+..++                      ..|-+|||+|++-.   ..+..
T Consensus       469 GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~d---StrSv  545 (804)
T KOG0478|consen  469 GDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSD---STRSV  545 (804)
T ss_pred             cCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhhhH---HHHHH
Confidence            9 9999999999998          11111111111                      67778999999833   22333


Q ss_pred             HHHHHHH------hhchhccCCCCeEEEEeCCCCC-------------CCCCCCCCCCccceEEE-cCCCCc
Q 036857           91 LSALLKF------VDGLWSSSGDGRILVMTTDYKD-------------HIDPVPLRPSCMDMHFH-LSSHTF  142 (170)
Q Consensus        91 ~~~ll~~------lDg~~~~~~~~~~vi~tTN~~~-------------~lD~AllRpgR~d~~i~-~~~p~~  142 (170)
                      +.+.+++      .-|+..+.+...-|+|+.|+.+             .|+|.|++  |||..+- ++.||+
T Consensus       546 LhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE  615 (804)
T KOG0478|consen  546 LHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDE  615 (804)
T ss_pred             HHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcch
Confidence            3333332      2355555556677999999554             68999998  9998765 566776

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF

Probab=98.00  E-value=2.4e-05  Score=66.96  Aligned_cols=43  Identities=16%  Similarity=0.103  Sum_probs=26.8

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchh-------ccCCCCeEEEEeCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLW-------SSSGDGRILVMTTDY  117 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~-------~~~~~~~~vi~tTN~  117 (170)
                      ...|||||+|.+-.      .....|+..++.-.       .....++-+|+|||.
T Consensus        94 gGtL~Ldei~~L~~------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~  143 (329)
T TIGR02974        94 GGTLFLDELATASL------LVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA  143 (329)
T ss_pred             CCEEEeCChHhCCH------HHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence            67899999998733      44455666654321       111245778888874

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=1.2e-05  Score=72.87  Aligned_cols=104  Identities=24%  Similarity=0.371  Sum_probs=66.2

Q ss_pred             cc-CCCcHHHHHHHHH-cccccc-----------------------ccccC----ceeEeeechhhhcc----CCccchH
Q 036857           43 WG-PYTGKSSLIAAMA-DLDLKE-----------------------FQSNS----RSILVIEDAVTSFE----SNAYNSV   89 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l~~-----------------------v~~~~----p~il~iDEiD~~~~----~~~~~~~   89 (170)
                      .| ||+|||.||..+| +.++.-                       ++.++    -+||++||++.+..    ....+..
T Consensus       544 ~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~  623 (744)
T KOG0741|consen  544 EGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNL  623 (744)
T ss_pred             ecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccccCchhhHH
Confidence            49 9999999999999 222221                       11121    78999999999987    2334455


Q ss_pred             HHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCC-CCCCCccceEEEcCCCCcchHHHHH
Q 036857           90 ALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPV-PLRPSCMDMHFHLSSHTFRHYLFEK  149 (170)
Q Consensus        90 ~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~A-llRpgR~d~~i~~~~p~~~~~l~~~  149 (170)
                      .+.+|+..+-..... +...+|++||...+-|-.. ++  ..|+-.|++|.-+..+++.+.
T Consensus       624 vlQaL~VllK~~ppk-g~kLli~~TTS~~~vL~~m~i~--~~F~~~i~Vpnl~~~~~~~~v  681 (744)
T KOG0741|consen  624 VLQALLVLLKKQPPK-GRKLLIFGTTSRREVLQEMGIL--DCFSSTIHVPNLTTGEQLLEV  681 (744)
T ss_pred             HHHHHHHHhccCCCC-CceEEEEecccHHHHHHHcCHH--HhhhheeecCccCchHHHHHH
Confidence            555566656555432 3356777788766644322 23  368889998877664444443

>TIGR01817 nifA Nif-specific regulatory protein

Probab=97.98  E-value=6e-05  Score=68.19  Aligned_cols=35  Identities=23%  Similarity=0.256  Sum_probs=27.0

Q ss_pred             CCcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH
Q 036857           23 ATSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        23 ~~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA   57 (170)
                      ..|+.+++....-+++...+            +| ||||||++|++|.
T Consensus       193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih  240 (534)
T TIGR01817       193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIH  240 (534)
T ss_pred             CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHH
Confidence            46788887766555555444            69 9999999999998

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>PRK04132 replication factor C small subunit; Provisional

Probab=97.95  E-value=6.2e-05  Score=71.68  Aligned_cols=60  Identities=13%  Similarity=0.138  Sum_probs=47.7

Q ss_pred             eeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857           70 SILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus        70 ~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      .|+||||+|.+-      ....+.|+..|+.-    +..+.+|++||.++.+.+++..  |+ ..+.|..|+.
T Consensus       632 KVvIIDEaD~Lt------~~AQnALLk~lEep----~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~  691 (846)
T PRK04132        632 KIIFLDEADALT------QDAQQALRRTMEMF----SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRD  691 (846)
T ss_pred             EEEEEECcccCC------HHHHHHHHHHhhCC----CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCH
Confidence            599999999883      34567777777664    3588899999999999999885  64 7788988876

>PRK13765 ATP-dependent protease Lon; Provisional

Probab=97.94  E-value=4.8e-05  Score=70.53  Aligned_cols=38  Identities=26%  Similarity=0.217  Sum_probs=32.7

Q ss_pred             CCCCCcccccCChhhHHHhhcCc--------cc-CCCcHHHHHHHHH
Q 036857           20 EHPATSNTIATDFDMNKALVDDY--------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        20 ~~p~~~~~v~~~~~~k~~l~~~~--------~G-PGtGKT~la~aiA   57 (170)
                      .+|..|++++++++.++.+...+        +| ||||||++|+++|
T Consensus        25 ~~~~~~~~vigq~~a~~~L~~~~~~~~~~l~~G~~G~GKttla~~l~   71 (637)
T PRK13765         25 VPERLIDQVIGQEHAVEVIKKAAKQRRHVMMIGSPGTGKSMLAKAMA   71 (637)
T ss_pred             cCcccHHHcCChHHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHH
Confidence            45778999999999888776544        69 9999999999999

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.94  E-value=3e-05  Score=70.34  Aligned_cols=45  Identities=16%  Similarity=0.043  Sum_probs=38.2

Q ss_pred             CcccCCCCCCCCcccccCChhhHHHhhcCc---------------cc-CCCcHHHHHHHHH
Q 036857           13 YWNSNKFEHPATSNTIATDFDMNKALVDDY---------------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        13 ~w~~~~~~~p~~~~~v~~~~~~k~~l~~~~---------------~G-PGtGKT~la~aiA   57 (170)
                      .=.|++...|.+.+++++++..-+++...+               .| ||||||++++.+|
T Consensus         6 ~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La   66 (519)
T PF03215_consen    6 SEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLA   66 (519)
T ss_pred             cCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHH
Confidence            335677999999999999997777766655               49 9999999999999

>PLN03210 Resistant to P

Probab=97.89  E-value=4.7e-05  Score=74.71  Aligned_cols=43  Identities=14%  Similarity=0.168  Sum_probs=32.8

Q ss_pred             ccCCCCCCCCcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH
Q 036857           15 NSNKFEHPATSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        15 ~~~~~~~p~~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA   57 (170)
                      ..+....+..++++++.+...+++...+            || +|+|||++|++++
T Consensus       173 ~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~  228 (1153)
T PLN03210        173 GKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALF  228 (1153)
T ss_pred             HhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHH
Confidence            3445556677888888777766665443            89 9999999999997

syringae 6; Provisional

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=97.89  E-value=2e-05  Score=65.21  Aligned_cols=69  Identities=17%  Similarity=0.337  Sum_probs=42.5

Q ss_pred             cc-CCCcHHHHHHHHH----ccccccccc--------------------------cCceeEeeechhhhccCCccchHHH
Q 036857           43 WG-PYTGKSSLIAAMA----DLDLKEFQS--------------------------NSRSILVIEDAVTSFESNAYNSVAL   91 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA----~~~l~~v~~--------------------------~~p~il~iDEiD~~~~~~~~~~~~~   91 (170)
                      +| ||||||.||-|||    ..+.+.++.                          ....+|+|||+=..    ..+...-
T Consensus       111 ~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~----~~~~~~~  186 (254)
T COG1484         111 LGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYE----PFSQEEA  186 (254)
T ss_pred             ECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEecccCc----cCCHHHH
Confidence            69 9999999999999    111111111                          11789999999432    1222334


Q ss_pred             HHHHHHhhchhccCCCCeEEEEeCCCCC
Q 036857           92 SALLKFVDGLWSSSGDGRILVMTTDYKD  119 (170)
Q Consensus        92 ~~ll~~lDg~~~~~~~~~~vi~tTN~~~  119 (170)
                      +.+.+.|+....+   ... ++|||.+.
T Consensus       187 ~~~~q~I~~r~~~---~~~-~~tsN~~~  210 (254)
T COG1484         187 DLLFQLISRRYES---RSL-IITSNLSF  210 (254)
T ss_pred             HHHHHHHHHHHhh---ccc-eeecCCCh
Confidence            4555666666542   334 99999543

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=97.87  E-value=2e-05  Score=58.77  Aligned_cols=65  Identities=20%  Similarity=0.158  Sum_probs=39.5

Q ss_pred             cc-CCCcHHHHHHHHHc------ccccc----------ccccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccC
Q 036857           43 WG-PYTGKSSLIAAMAD------LDLKE----------FQSNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSS  105 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA~------~~l~~----------v~~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~  105 (170)
                      +| |||||+++|++|..      -.+..          +....+..|+|+|+|.+-.      .....+++.++...   
T Consensus        27 ~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~~~~l~~a~~gtL~l~~i~~L~~------~~Q~~L~~~l~~~~---   97 (138)
T PF14532_consen   27 TGEPGTGKSLLARALHRYSGRANGPFIVIDCASLPAELLEQAKGGTLYLKNIDRLSP------EAQRRLLDLLKRQE---   97 (138)
T ss_dssp             ECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTCHHHHHHCTTSEEEEECGCCS-H------HHHHHHHHHHHHCT---
T ss_pred             EcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCcHHHHHHcCCCEEEECChHHCCH------HHHHHHHHHHHhcC---
Confidence            69 99999999999991      01111          1111278999999998733      34455555555432   


Q ss_pred             CCCeEEEEeCC
Q 036857          106 GDGRILVMTTD  116 (170)
Q Consensus       106 ~~~~~vi~tTN  116 (170)
                      ..++-+|+||.
T Consensus        98 ~~~~RlI~ss~  108 (138)
T PF14532_consen   98 RSNVRLIASSS  108 (138)
T ss_dssp             TTTSEEEEEEC
T ss_pred             CCCeEEEEEeC
Confidence            23445555554

>PRK06090 DNA polymerase III subunit delta'; Validated

Probab=97.86  E-value=0.00016  Score=61.91  Aligned_cols=61  Identities=20%  Similarity=0.265  Sum_probs=47.6

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      ..|++||++|.+      +....+.||..++.-    +.++++|.+|+.++.|-|.++.  |.- .+.|+.|+.
T Consensus       109 ~kV~iI~~ae~m------~~~AaNaLLKtLEEP----p~~t~fiL~t~~~~~lLpTI~S--RCq-~~~~~~~~~  169 (319)
T PRK06090        109 YRLFVIEPADAM------NESASNALLKTLEEP----APNCLFLLVTHNQKRLLPTIVS--RCQ-QWVVTPPST  169 (319)
T ss_pred             ceEEEecchhhh------CHHHHHHHHHHhcCC----CCCeEEEEEECChhhChHHHHh--cce-eEeCCCCCH
Confidence            468888888876      345678888888774    5689999999999999998875  553 778888877

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=97.86  E-value=0.00013  Score=62.54  Aligned_cols=61  Identities=16%  Similarity=0.195  Sum_probs=46.2

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      .-|++||++|.+      +....+.||..|+.-    +.++++|.+|+.++.|-|.++.  |+ ..+.|+.|+.
T Consensus       114 ~kV~iI~~ae~m------~~~AaNaLLKtLEEP----p~~~~fiL~~~~~~~lLpTIrS--RC-q~i~~~~~~~  174 (319)
T PRK08769        114 AQVVIVDPADAI------NRAACNALLKTLEEP----SPGRYLWLISAQPARLPATIRS--RC-QRLEFKLPPA  174 (319)
T ss_pred             cEEEEeccHhhh------CHHHHHHHHHHhhCC----CCCCeEEEEECChhhCchHHHh--hh-eEeeCCCcCH
Confidence            357888888766      345678888877664    4688899999999999999885  55 4567887776

>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot)

Probab=97.84  E-value=2e-05  Score=62.22  Aligned_cols=68  Identities=19%  Similarity=0.352  Sum_probs=42.1

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHT  141 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~  141 (170)
                      .++|+|||+..+++.+..........++.+....   ..+.-++++|-.+..||+.+++  .++.++++..++
T Consensus        80 ~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hR---h~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~~  147 (193)
T PF05707_consen   80 GSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHR---HYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKLD  147 (193)
T ss_dssp             T-EEEETTGGGTSB---T-T----HHHHGGGGCC---CTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE--
T ss_pred             CcEEEEECChhhcCCCccccccchHHHHHHHHhC---cCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEeec
Confidence            7899999999999865553222334445554443   4578889999999999998874  899999887765

Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=97.81  E-value=0.00016  Score=65.47  Aligned_cols=38  Identities=21%  Similarity=0.141  Sum_probs=27.3

Q ss_pred             CCCCCcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH
Q 036857           20 EHPATSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        20 ~~p~~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA   57 (170)
                      ....+|+++++....-+++...+            +| +||||+++|+++.
T Consensus       198 ~~~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH  248 (520)
T PRK10820        198 NDDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACH  248 (520)
T ss_pred             cccccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHH
Confidence            34557888887766433343333            79 9999999999996

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=97.80  E-value=6.8e-05  Score=64.35  Aligned_cols=61  Identities=15%  Similarity=0.173  Sum_probs=47.3

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      .-|++||++|.+      +....+.||..|+.-    +.++++|.+|+.++.|.|.++.  |. ..+.|..|+.
T Consensus       108 ~KV~iI~~a~~m------~~~AaNaLLKtLEEP----p~~~~fiL~t~~~~~llpTI~S--RC-~~~~~~~~~~  168 (325)
T PRK06871        108 NKVVYIQGAERL------TEAAANALLKTLEEP----RPNTYFLLQADLSAALLPTIYS--RC-QTWLIHPPEE  168 (325)
T ss_pred             ceEEEEechhhh------CHHHHHHHHHHhcCC----CCCeEEEEEECChHhCchHHHh--hc-eEEeCCCCCH
Confidence            568888888876      345678888888764    5689999999999999999874  54 4567877766

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=97.78  E-value=0.00013  Score=67.90  Aligned_cols=35  Identities=17%  Similarity=0.174  Sum_probs=26.7

Q ss_pred             CCcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH
Q 036857           23 ATSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        23 ~~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA   57 (170)
                      ..|+++++.....+.+...+            +| ||||||++|++|.
T Consensus       373 ~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih  420 (686)
T PRK15429        373 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIH  420 (686)
T ss_pred             ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHH
Confidence            46777877766655554444            59 9999999999998

>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]

Probab=97.78  E-value=5.6e-05  Score=68.41  Aligned_cols=93  Identities=13%  Similarity=0.087  Sum_probs=60.5

Q ss_pred             CCCCCCcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH------ccccccccccC-----------
Q 036857           19 FEHPATSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA------DLDLKEFQSNS-----------   68 (170)
Q Consensus        19 ~~~p~~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA------~~~l~~v~~~~-----------   68 (170)
                      .....+|+++++....-.++...+            .| +||||.++|++|.      .-.+..+.+.+           
T Consensus       238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELF  317 (560)
T COG3829         238 LKAKYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELF  317 (560)
T ss_pred             cccccchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHh
Confidence            455668999988776666555544            69 9999999999999      11122221111           


Q ss_pred             -----------------------ceeEeeechhhhccCCccchHHHHHHHHHhh-------chhccCCCCeEEEEeCCC
Q 036857           69 -----------------------RSILVIEDAVTSFESNAYNSVALSALLKFVD-------GLWSSSGDGRILVMTTDY  117 (170)
Q Consensus        69 -----------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lD-------g~~~~~~~~~~vi~tTN~  117 (170)
                                             ..-||+|||-.+      .-.....||..|.       |-....+-++-||+|||+
T Consensus       318 Gye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgem------pl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~  390 (560)
T COG3829         318 GYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEM------PLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNR  390 (560)
T ss_pred             CcCCccccccccCCCCcceeeccCCeEEehhhccC------CHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCc
Confidence                                   678999999654      3455566776654       222222346789999994

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.78  E-value=9e-05  Score=54.79  Aligned_cols=15  Identities=33%  Similarity=0.614  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||+|||++++.++
T Consensus         5 ~G~~G~GKT~l~~~i~   20 (165)
T cd01120           5 FGPTGSGKTTLALQLA   20 (165)
T ss_pred             eCCCCCCHHHHHHHHH
Confidence            69 9999999999998

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=97.77  E-value=4.9e-05  Score=61.90  Aligned_cols=70  Identities=17%  Similarity=0.134  Sum_probs=43.9

Q ss_pred             cc-CCCcHHHHHHHHHc--------c---------ccccccc--------------------cCceeEeeechhhhcc--
Q 036857           43 WG-PYTGKSSLIAAMAD--------L---------DLKEFQS--------------------NSRSILVIEDAVTSFE--   82 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA~--------~---------~l~~v~~--------------------~~p~il~iDEiD~~~~--   82 (170)
                      || ||+|||++|+.+++        -         +...+..                    +....|+||.++.+..  
T Consensus        18 yG~~G~GKtt~a~~~~~~~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDsI~~l~~~~   97 (220)
T TIGR01618        18 YGKPGTGKTSTIKYLPGKTLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDNISALQNLW   97 (220)
T ss_pred             ECCCCCCHHHHHHhcCCCCEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEecHHHHHHHH
Confidence            89 99999999999991        0         0100110                    1167999999998765  


Q ss_pred             -------------CCccchHHHHHHHHHhhchhccCCCCeEEEE
Q 036857           83 -------------SNAYNSVALSALLKFVDGLWSSSGDGRILVM  113 (170)
Q Consensus        83 -------------~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~  113 (170)
                                   ....-...-..|++.+..+.+ .+.++++++
T Consensus        98 ~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~-~g~nII~tA  140 (220)
T TIGR01618        98 LENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKE-SNKNIYATA  140 (220)
T ss_pred             HHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHh-CCCcEEEEE
Confidence                         111223445567777777765 255666655

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]

Probab=97.74  E-value=4e-05  Score=70.49  Aligned_cols=91  Identities=15%  Similarity=0.200  Sum_probs=59.5

Q ss_pred             c-CCCcHHHHHHHHH-----------------ccccccccccC---------------ceeEeeechhhhccCCccchHH
Q 036857           44 G-PYTGKSSLIAAMA-----------------DLDLKEFQSNS---------------RSILVIEDAVTSFESNAYNSVA   90 (170)
Q Consensus        44 G-PGtGKT~la~aiA-----------------~~~l~~v~~~~---------------p~il~iDEiD~~~~~~~~~~~~   90 (170)
                      | ||||||.+.++.+                 ++-.+-+++..               ..|-.|||+|.+-.      ..
T Consensus       385 GDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~------~d  458 (764)
T KOG0480|consen  385 GDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDV------KD  458 (764)
T ss_pred             CCCCccHHHHHHHHhccCCcceEecCcccccccceEEEEecCCCCceeeecCcEEEccCceEEechhcccCh------Hh
Confidence            9 9999999999999                 12222222211               77888999998833      12


Q ss_pred             HHHHHHHhh---------chhccCCCCeEEEEeCCCCC-------------CCCCCCCCCCccceE-EEcCCCCc
Q 036857           91 LSALLKFVD---------GLWSSSGDGRILVMTTDYKD-------------HIDPVPLRPSCMDMH-FHLSSHTF  142 (170)
Q Consensus        91 ~~~ll~~lD---------g~~~~~~~~~~vi~tTN~~~-------------~lD~AllRpgR~d~~-i~~~~p~~  142 (170)
                      .-++.++|+         |+...-+...-|+||+|+..             .++++++.  |||.. |-++-|++
T Consensus       459 qvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE  531 (764)
T KOG0480|consen  459 QVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNE  531 (764)
T ss_pred             HHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCch
Confidence            234445554         33322233445899999765             68999996  99965 45667777

>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP

Probab=97.72  E-value=4.6e-05  Score=66.25  Aligned_cols=70  Identities=21%  Similarity=0.461  Sum_probs=42.7

Q ss_pred             cc-CCCcHHHHHHHHH-ccc-------------------cccccccC-------------ceeEeeechhhhccCCccch
Q 036857           43 WG-PYTGKSSLIAAMA-DLD-------------------LKEFQSNS-------------RSILVIEDAVTSFESNAYNS   88 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~-------------------l~~v~~~~-------------p~il~iDEiD~~~~~~~~~~   88 (170)
                      || +|+|||+|.-.+. .+.                   +.......             ..||+|||+..-   .-...
T Consensus        68 ~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~~lLcfDEF~V~---DiaDA  144 (362)
T PF03969_consen   68 WGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKESRLLCFDEFQVT---DIADA  144 (362)
T ss_pred             ECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCEEEEeeeecc---chhHH
Confidence            89 9999999998887 111                   11111010             559999999532   11223


Q ss_pred             HHHHHHHHHhhchhccCCCCeEEEEeCC-CCCCC
Q 036857           89 VALSALLKFVDGLWSSSGDGRILVMTTD-YKDHI  121 (170)
Q Consensus        89 ~~~~~ll~~lDg~~~~~~~~~~vi~tTN-~~~~l  121 (170)
                      ..+..|++.   +..   .++++|+|+| .|+.|
T Consensus       145 mil~rLf~~---l~~---~gvvlVaTSN~~P~~L  172 (362)
T PF03969_consen  145 MILKRLFEA---LFK---RGVVLVATSNRPPEDL  172 (362)
T ss_pred             HHHHHHHHH---HHH---CCCEEEecCCCChHHH
Confidence            344445443   343   5999999999 55544

AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=97.72  E-value=5.6e-05  Score=64.75  Aligned_cols=61  Identities=16%  Similarity=0.189  Sum_probs=43.2

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      ..|+++|++|.+      .....+.++..|+...    .++.+|++|+.++.+.+.+.+  |+ ..+.|+.|+.
T Consensus       114 ~kV~iiEp~~~L------d~~a~naLLk~LEep~----~~~~~Ilvth~~~~ll~ti~S--Rc-~~~~~~~~~~  174 (325)
T PRK08699        114 LRVILIHPAESM------NLQAANSLLKVLEEPP----PQVVFLLVSHAADKVLPTIKS--RC-RKMVLPAPSH  174 (325)
T ss_pred             ceEEEEechhhC------CHHHHHHHHHHHHhCc----CCCEEEEEeCChHhChHHHHH--Hh-hhhcCCCCCH
Confidence            457777777765      3355677777776652    357788899999999998875  33 5677777776

>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]

Probab=97.71  E-value=4.6e-05  Score=70.90  Aligned_cols=91  Identities=19%  Similarity=0.196  Sum_probs=59.0

Q ss_pred             c-CCCcHHHHHHHHH---------------cccc--ccccc--------cC-------ceeEeeechhhhccCCccchHH
Q 036857           44 G-PYTGKSSLIAAMA---------------DLDL--KEFQS--------NS-------RSILVIEDAVTSFESNAYNSVA   90 (170)
Q Consensus        44 G-PGtGKT~la~aiA---------------~~~l--~~v~~--------~~-------p~il~iDEiD~~~~~~~~~~~~   90 (170)
                      | ||||||.+-|.++               ..+|  +-+..        .+       +.|.+|||+|.+-.      ..
T Consensus       326 GDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~------~d  399 (682)
T COG1241         326 GDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNE------ED  399 (682)
T ss_pred             CCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCCh------HH
Confidence            9 9999999999999               1111  11111        11       88999999998732      33


Q ss_pred             HHHHHHHhh---------chhccCCCCeEEEEeCCCCC-------------CCCCCCCCCCccceEEEcCC-CCc
Q 036857           91 LSALLKFVD---------GLWSSSGDGRILVMTTDYKD-------------HIDPVPLRPSCMDMHFHLSS-HTF  142 (170)
Q Consensus        91 ~~~ll~~lD---------g~~~~~~~~~~vi~tTN~~~-------------~lD~AllRpgR~d~~i~~~~-p~~  142 (170)
                      .+.+.++|+         |+...-+...-|+||+|+..             .++++|+.  |||..+-+.- |+.
T Consensus       400 r~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~  472 (682)
T COG1241         400 RVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDE  472 (682)
T ss_pred             HHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCc
Confidence            344555554         22111123445889999666             68899996  9998877653 665

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=97.69  E-value=8.2e-05  Score=63.99  Aligned_cols=61  Identities=13%  Similarity=0.071  Sum_probs=48.6

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      .-|++||++|.+      +....+.||..|+.-    +.+.++|.+|++++.|.|-++.  |.- .+.|+.|+.
T Consensus       109 ~kV~iI~~ae~m------~~~AaNaLLKtLEEP----p~~t~fiL~t~~~~~lLpTIrS--RCq-~~~~~~~~~  169 (334)
T PRK07993        109 AKVVWLPDAALL------TDAAANALLKTLEEP----PENTWFFLACREPARLLATLRS--RCR-LHYLAPPPE  169 (334)
T ss_pred             ceEEEEcchHhh------CHHHHHHHHHHhcCC----CCCeEEEEEECChhhChHHHHh--ccc-cccCCCCCH
Confidence            568888888876      345678898888764    5689999999999999999885  655 578888776

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.69  E-value=8.9e-05  Score=53.75  Aligned_cols=15  Identities=47%  Similarity=0.742  Sum_probs=14.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||+|||++++.++
T Consensus        10 ~G~~G~GKT~~~~~~~   25 (131)
T PF13401_consen   10 SGPPGSGKTTLIKRLA   25 (131)
T ss_dssp             EE-TTSSHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            79 9999999999999

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.69  E-value=0.00017  Score=62.47  Aligned_cols=85  Identities=15%  Similarity=0.176  Sum_probs=55.9

Q ss_pred             ceeEeeechhhhccCCccch------HHHHHHHHHhhchhccCC------CCeEEEEeCC----CCCCCCCCCCCCCccc
Q 036857           69 RSILVIEDAVTSFESNAYNS------VALSALLKFVDGLWSSSG------DGRILVMTTD----YKDHIDPVPLRPSCMD  132 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~------~~~~~ll~~lDg~~~~~~------~~~~vi~tTN----~~~~lD~AllRpgR~d  132 (170)
                      ..|+||||||.++...+.+.      -+...+|-.+.|..-+..      +.+++|++-.    .|.+|=|.|.  |||-
T Consensus       251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRfP  328 (444)
T COG1220         251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRFP  328 (444)
T ss_pred             cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCCc
Confidence            78999999999997332111      234556666666543211      2345665543    7778888887  8999


Q ss_pred             eEEEcCCCCc----------chHHHHHHHHHhh
Q 036857          133 MHFHLSSHTF----------RHYLFEKIEERLA  155 (170)
Q Consensus       133 ~~i~~~~p~~----------~~~l~~~~~~~~~  155 (170)
                      .++++...+.          ...+..+.++++.
T Consensus       329 IRVEL~~Lt~~Df~rILtep~~sLikQY~aLlk  361 (444)
T COG1220         329 IRVELDALTKEDFERILTEPKASLIKQYKALLK  361 (444)
T ss_pred             eEEEcccCCHHHHHHHHcCcchHHHHHHHHHHh
Confidence            9999998877          3344455555554

>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional

Probab=97.61  E-value=0.00029  Score=61.83  Aligned_cols=43  Identities=12%  Similarity=0.082  Sum_probs=27.1

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchh-------ccCCCCeEEEEeCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLW-------SSSGDGRILVMTTDY  117 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~-------~~~~~~~~vi~tTN~  117 (170)
                      ..+|||||+|.+-.      .....|+..++.-.       .....++.+|+|||.
T Consensus       238 ~gtl~ld~i~~l~~------~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~  287 (457)
T PRK11361        238 EGTLLLDEIGEMPL------VLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNR  287 (457)
T ss_pred             CCEEEEechhhCCH------HHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCC
Confidence            56899999998743      34556666665321       111235678888884

>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=0.00016  Score=64.32  Aligned_cols=98  Identities=18%  Similarity=0.241  Sum_probs=62.1

Q ss_pred             cc-CCCcHHHHHHHHH---cccccccccc------------------------------CceeEeeechhhhcc------
Q 036857           43 WG-PYTGKSSLIAAMA---DLDLKEFQSN------------------------------SRSILVIEDAVTSFE------   82 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA---~~~l~~v~~~------------------------------~p~il~iDEiD~~~~------   82 (170)
                      .| .|+|||+||+.+|   ++.+.--..+                              ...|+||||+|.+..      
T Consensus       232 lGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~~~i~  311 (564)
T KOG0745|consen  232 LGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKAESIH  311 (564)
T ss_pred             ECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccCcccc
Confidence            59 9999999999999   2222111110                              188999999999995      


Q ss_pred             -CCc-cchHHHHHHHHHhhchhcc---------CCCCeEEEEeCC-------CCCCCCCCCCCCCcc-ceEEEcCCCCc
Q 036857           83 -SNA-YNSVALSALLKFVDGLWSS---------SGDGRILVMTTD-------YKDHIDPVPLRPSCM-DMHFHLSSHTF  142 (170)
Q Consensus        83 -~~~-~~~~~~~~ll~~lDg~~~~---------~~~~~~vi~tTN-------~~~~lD~AllRpgR~-d~~i~~~~p~~  142 (170)
                       .+. ...-+...||..++|..-.         ...+.+.|-|||       ---.||.-+.|  |+ |..+-|+.|+.
T Consensus       312 ~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~r--R~~d~slGFg~~s~  388 (564)
T KOG0745|consen  312 TSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISR--RLDDKSLGFGAPSS  388 (564)
T ss_pred             ccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHH--hhcchhcccCCCCC
Confidence             111 2233566688888765311         123456666666       34466766666  54 46788888844

>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=0.00013  Score=69.65  Aligned_cols=68  Identities=31%  Similarity=0.427  Sum_probs=47.8

Q ss_pred             c-CCCcHHHHHHHHH-----------ccccccccc------c--------------------CceeEeeechhhhccCCc
Q 036857           44 G-PYTGKSSLIAAMA-----------DLDLKEFQS------N--------------------SRSILVIEDAVTSFESNA   85 (170)
Q Consensus        44 G-PGtGKT~la~aiA-----------~~~l~~v~~------~--------------------~p~il~iDEiD~~~~~~~   85 (170)
                      | .|+|||-+|+|+|           .++++....      .                    ..+||||||||.      
T Consensus       598 GpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEk------  671 (898)
T KOG1051|consen  598 GPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEK------  671 (898)
T ss_pred             CCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhh------
Confidence            9 9999999999999           455554111      1                    178999999985      


Q ss_pred             cchHHHHHHHHHhhchhc--cC-----CCCeEEEEeCCC
Q 036857           86 YNSVALSALLKFVDGLWS--SS-----GDGRILVMTTDY  117 (170)
Q Consensus        86 ~~~~~~~~ll~~lDg~~~--~~-----~~~~~vi~tTN~  117 (170)
                      .....++.|+..+|.-.-  +.     -.+++||||+|.
T Consensus       672 Ah~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~  710 (898)
T KOG1051|consen  672 AHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNV  710 (898)
T ss_pred             cCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEeccc
Confidence            345677778888874321  11     136899999884

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=97.56  E-value=0.00017  Score=60.30  Aligned_cols=70  Identities=19%  Similarity=0.207  Sum_probs=36.3

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHh-h--chhcc------CCCCeEEEEeCCCCC---CCCCCCCCCCccceEEE
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFV-D--GLWSS------SGDGRILVMTTDYKD---HIDPVPLRPSCMDMHFH  136 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~l-D--g~~~~------~~~~~~vi~tTN~~~---~lD~AllRpgR~d~~i~  136 (170)
                      .+|+|+||+..-..+. .......+||.++ |  |....      .-.++.+++|+|...   .|++-++   |.-..+.
T Consensus       101 ~lv~fiDDlN~p~~d~-ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~---r~f~i~~  176 (272)
T PF12775_consen  101 KLVLFIDDLNMPQPDK-YGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFL---RHFNILN  176 (272)
T ss_dssp             EEEEEEETTT-S---T-TS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHH---TTEEEEE
T ss_pred             EEEEEecccCCCCCCC-CCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHh---hheEEEE
Confidence            7899999997655433 3333345666553 3  22211      113567788887532   4667676   4446788


Q ss_pred             cCCCCc
Q 036857          137 LSSHTF  142 (170)
Q Consensus       137 ~~~p~~  142 (170)
                      ++.|+.
T Consensus       177 ~~~p~~  182 (272)
T PF12775_consen  177 IPYPSD  182 (272)
T ss_dssp             ----TC
T ss_pred             ecCCCh
Confidence            999988

>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR

Probab=97.55  E-value=0.00026  Score=64.37  Aligned_cols=36  Identities=14%  Similarity=0.024  Sum_probs=27.0

Q ss_pred             CCCcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH
Q 036857           22 PATSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        22 p~~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA   57 (170)
                      ...|+++++....-+++...+            .| |||||+++|++|.
T Consensus       208 ~~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH  256 (526)
T TIGR02329       208 RYRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIH  256 (526)
T ss_pred             ccchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHH
Confidence            356888887766555454444            59 9999999999998

At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.55  E-value=0.00023  Score=58.85  Aligned_cols=14  Identities=43%  Similarity=0.617  Sum_probs=13.9

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | +||||||+-|.||
T Consensus        36 GpSGcGKSTLLriiA   50 (248)
T COG1116          36 GPSGCGKSTLLRLIA   50 (248)
T ss_pred             CCCCCCHHHHHHHHh
Confidence            9 9999999999999

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=97.52  E-value=0.00068  Score=55.26  Aligned_cols=15  Identities=33%  Similarity=0.432  Sum_probs=14.5

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||+|||++++.++
T Consensus        49 ~G~~G~GKTtl~~~l~   64 (269)
T TIGR03015        49 TGEVGAGKTTLIRNLL   64 (269)
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            79 9999999999999

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PF05729 NACHT: NACHT domain

Probab=97.52  E-value=0.00027  Score=52.65  Aligned_cols=15  Identities=47%  Similarity=0.731  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.++
T Consensus         6 ~G~~G~GKStll~~~~   21 (166)
T PF05729_consen    6 SGEPGSGKSTLLRKLA   21 (166)
T ss_pred             ECCCCCChHHHHHHHH
Confidence            49 9999999999999

>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]

Probab=97.47  E-value=0.00017  Score=61.41  Aligned_cols=30  Identities=20%  Similarity=0.246  Sum_probs=23.7

Q ss_pred             ccCChhhHHHhhcCc-----------------cc-CCCcHHHHHHHHH
Q 036857           28 IATDFDMNKALVDDY-----------------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        28 v~~~~~~k~~l~~~~-----------------~G-PGtGKT~la~aiA   57 (170)
                      +.+++-+++.++..+                 +| |||||+..++.||
T Consensus        84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA  131 (344)
T KOG2170|consen   84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIA  131 (344)
T ss_pred             hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHH
Confidence            456666666666655                 59 9999999999999

>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]

Probab=97.47  E-value=0.00017  Score=66.94  Aligned_cols=45  Identities=9%  Similarity=0.118  Sum_probs=31.7

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDH  120 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~  120 (170)
                      ++||+|||+|.++...      ..-|-+.+|..... +...+||+-.|.-+.
T Consensus       509 ~~VvLiDElD~Lvtr~------QdVlYn~fdWpt~~-~sKLvvi~IaNTmdl  553 (767)
T KOG1514|consen  509 TTVVLIDELDILVTRS------QDVLYNIFDWPTLK-NSKLVVIAIANTMDL  553 (767)
T ss_pred             CEEEEeccHHHHhccc------HHHHHHHhcCCcCC-CCceEEEEecccccC
Confidence            9999999999997722      23456778877653 556777777775543

>PRK08118 topology modulation protein; Reviewed

Probab=97.44  E-value=0.00016  Score=56.02  Aligned_cols=79  Identities=16%  Similarity=0.145  Sum_probs=43.8

Q ss_pred             cc-CCCcHHHHHHHHH-ccccccccccCceeEeeechhhhccCC---ccchHHHHHHHHHhhchhccCCCCeEEEEeCCC
Q 036857           43 WG-PYTGKSSLIAAMA-DLDLKEFQSNSRSILVIEDAVTSFESN---AYNSVALSALLKFVDGLWSSSGDGRILVMTTDY  117 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l~~v~~~~p~il~iDEiD~~~~~~---~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~  117 (170)
                      .| ||+|||++|+.|+ .+++..+           ++|.++-..   .........++.   .+..  .++  .|+-.|.
T Consensus         7 ~G~~GsGKSTlak~L~~~l~~~~~-----------~lD~l~~~~~w~~~~~~~~~~~~~---~~~~--~~~--wVidG~~   68 (167)
T PRK08118          7 IGSGGSGKSTLARQLGEKLNIPVH-----------HLDALFWKPNWEGVPKEEQITVQN---ELVK--EDE--WIIDGNY   68 (167)
T ss_pred             ECCCCCCHHHHHHHHHHHhCCCce-----------ecchhhcccCCcCCCHHHHHHHHH---HHhc--CCC--EEEeCCc
Confidence            59 9999999999999 4444322           122222100   111112222222   2222  122  4556677


Q ss_pred             CCCCCCCCCCCCccceEEEcCCCCc
Q 036857          118 KDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       118 ~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      ...++..+-   +.|..|.+..|..
T Consensus        69 ~~~~~~~l~---~~d~vi~Ld~p~~   90 (167)
T PRK08118         69 GGTMDIRLN---AADTIIFLDIPRT   90 (167)
T ss_pred             chHHHHHHH---hCCEEEEEeCCHH
Confidence            766765543   7899999998866

>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator

Probab=97.41  E-value=0.0013  Score=57.79  Aligned_cols=15  Identities=40%  Similarity=0.463  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| +||||+++|+++.
T Consensus       168 ~Ge~GtGK~~lA~~ih  183 (445)
T TIGR02915       168 LGESGTGKEVLARALH  183 (445)
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            59 9999999999997

Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).

>PRK10923 glnG nitrogen regulation protein NR(I); Provisional

Probab=97.41  E-value=0.0011  Score=58.58  Aligned_cols=66  Identities=9%  Similarity=0.007  Sum_probs=36.7

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhc-------cCCCCeEEEEeCCCC-------CCCCCCCCCCCcc-ce
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWS-------SSGDGRILVMTTDYK-------DHIDPVPLRPSCM-DM  133 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~-------~~~~~~~vi~tTN~~-------~~lD~AllRpgR~-d~  133 (170)
                      ...+||||+|.+-.      .....|+..++.-.-       ....++-+|+||+..       ..+.+.|..  |+ ..
T Consensus       233 ~Gtl~l~~i~~l~~------~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~  304 (469)
T PRK10923        233 GGTLFLDEIGDMPL------DVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVI  304 (469)
T ss_pred             CCEEEEeccccCCH------HHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhcce
Confidence            56789999998743      334556666653210       001245788888742       234444443  55 45


Q ss_pred             EEEcCCCCc
Q 036857          134 HFHLSSHTF  142 (170)
Q Consensus       134 ~i~~~~p~~  142 (170)
                      .|++|.--.
T Consensus       305 ~i~~PpLre  313 (469)
T PRK10923        305 RVHLPPLRE  313 (469)
T ss_pred             eecCCCccc
Confidence            666655444

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional

Probab=97.40  E-value=0.00045  Score=62.38  Aligned_cols=34  Identities=15%  Similarity=0.161  Sum_probs=24.3

Q ss_pred             CcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH
Q 036857           24 TSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        24 ~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA   57 (170)
                      .++.+++....-+++...+            +| +||||+++|++|.
T Consensus       185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih  231 (509)
T PRK05022        185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIH  231 (509)
T ss_pred             cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHH
Confidence            4555666555554444443            69 9999999999998

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=97.38  E-value=0.0014  Score=57.13  Aligned_cols=14  Identities=50%  Similarity=0.786  Sum_probs=13.8

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||||||.+|-+||
T Consensus        72 GppgTGKTAlA~gIa   86 (450)
T COG1224          72 GPPGTGKTALAMGIA   86 (450)
T ss_pred             CCCCCcHHHHHHHHH
Confidence            9 9999999999999

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=97.38  E-value=0.00044  Score=60.46  Aligned_cols=33  Identities=27%  Similarity=0.232  Sum_probs=24.8

Q ss_pred             cccccCChhhHHHhhcCc---------------cc-CCCcHHHHHHHHH
Q 036857           25 SNTIATDFDMNKALVDDY---------------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        25 ~~~v~~~~~~k~~l~~~~---------------~G-PGtGKT~la~aiA   57 (170)
                      .+-++++.+.++...-.+               -| ||||||.+|-++|
T Consensus        23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia   71 (398)
T PF06068_consen   23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIA   71 (398)
T ss_dssp             ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHH
T ss_pred             cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHH
Confidence            567788888887643222               29 9999999999999

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=97.36  E-value=0.00051  Score=52.80  Aligned_cols=46  Identities=15%  Similarity=0.096  Sum_probs=25.8

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD  119 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~  119 (170)
                      |.++++|++-.+...  ........+...+..+..   .++.+|+++....
T Consensus        96 ~~~lviD~~~~~~~~--~~~~~~~~i~~l~~~l~~---~g~tvi~v~~~~~  141 (187)
T cd01124          96 AKRVVIDSVSGLLLM--EQSTARLEIRRLLFALKR---FGVTTLLTSEQSG  141 (187)
T ss_pred             CCEEEEeCcHHHhhc--ChHHHHHHHHHHHHHHHH---CCCEEEEEecccc
Confidence            889999999877552  112222333444444443   3566666665443

A related protein is found in archaea.

>PF13173 AAA_14: AAA domain

Probab=97.33  E-value=0.00051  Score=50.51  Aligned_cols=15  Identities=33%  Similarity=0.499  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| +|||||++++.++
T Consensus         8 ~G~R~vGKTtll~~~~   23 (128)
T PF13173_consen    8 TGPRGVGKTTLLKQLA   23 (128)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            69 9999999999999

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=97.31  E-value=0.00092  Score=59.04  Aligned_cols=92  Identities=12%  Similarity=0.173  Sum_probs=56.4

Q ss_pred             cc-CCCcHHHHHHHHH------cccccccccc------------------------CceeEeeechhhhccCCccchHHH
Q 036857           43 WG-PYTGKSSLIAAMA------DLDLKEFQSN------------------------SRSILVIEDAVTSFESNAYNSVAL   91 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA------~~~l~~v~~~------------------------~p~il~iDEiD~~~~~~~~~~~~~   91 (170)
                      || .|.|||.|++|++      ..+...+...                        .-.+++|||++.+.+..    .+.
T Consensus       119 ~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~gk~----~~q  194 (408)
T COG0593         119 YGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAGKE----RTQ  194 (408)
T ss_pred             ECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhhccCeeeechHhHhcCCh----hHH
Confidence            79 9999999999999      1111111111                        24599999999886632    224


Q ss_pred             HHHHHHhhchhccCCCCeEEEEeCCCCCCCC---CCCCCCCccc--eEEEcCCCCc
Q 036857           92 SALLKFVDGLWSSSGDGRILVMTTDYKDHID---PVPLRPSCMD--MHFHLSSHTF  142 (170)
Q Consensus        92 ~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD---~AllRpgR~d--~~i~~~~p~~  142 (170)
                      .+|...+..+..  .++.+++.+-..|..+.   +-|..  ||.  ..+++..|+.
T Consensus       195 eefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~  246 (408)
T COG0593         195 EEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDD  246 (408)
T ss_pred             HHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCH
Confidence            445555555544  23344444445666554   55553  776  6777778887

>PRK15115 response regulator GlrR; Provisional

Probab=97.31  E-value=0.0012  Score=58.00  Aligned_cols=54  Identities=7%  Similarity=-0.023  Sum_probs=31.3

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchh-cc------CCCCeEEEEeCCCCCCCCCCCCCCCcc
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLW-SS------SGDGRILVMTTDYKDHIDPVPLRPSCM  131 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~-~~------~~~~~~vi~tTN~~~~lD~AllRpgR~  131 (170)
                      ...|||||+|.+-.      .....|+..++.-. ..      ...++.+|+||+.  .++.++. .|+|
T Consensus       229 ~gtl~l~~i~~l~~------~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~--~l~~~~~-~~~f  289 (444)
T PRK15115        229 GGTLFLDEIGDMPA------PLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHR--DLPKAMA-RGEF  289 (444)
T ss_pred             CCEEEEEccccCCH------HHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCC--CHHHHHH-cCCc
Confidence            67899999998743      33455666654321 10      0125688888885  2444443 3666

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional

Probab=97.30  E-value=0.00055  Score=62.46  Aligned_cols=35  Identities=14%  Similarity=0.042  Sum_probs=26.4

Q ss_pred             CCcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH
Q 036857           23 ATSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        23 ~~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA   57 (170)
                      .+|+++++....-+++...+            .| |||||+++|++|.
T Consensus       216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH  263 (538)
T PRK15424        216 YVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIH  263 (538)
T ss_pred             cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHH
Confidence            36888888765555554443            59 9999999999985

>PRK07261 topology modulation protein; Provisional

Probab=97.30  E-value=0.00018  Score=55.81  Aligned_cols=83  Identities=11%  Similarity=0.141  Sum_probs=43.6

Q ss_pred             cc-CCCcHHHHHHHHH-ccccccccccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCC
Q 036857           43 WG-PYTGKSSLIAAMA-DLDLKEFQSNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDH  120 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l~~v~~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~  120 (170)
                      .| ||+|||++|+.++ ..++..+        -+|.+   .-..+.......+++..+.....  + +. .|+-.|+...
T Consensus         6 ~G~~GsGKSTla~~l~~~~~~~~i--------~~D~~---~~~~~~~~~~~~~~~~~~~~~~~--~-~~-wIidg~~~~~   70 (171)
T PRK07261          6 IGYSGSGKSTLARKLSQHYNCPVL--------HLDTL---HFQPNWQERDDDDMIADISNFLL--K-HD-WIIDGNYSWC   70 (171)
T ss_pred             EcCCCCCHHHHHHHHHHHhCCCeE--------ecCCE---EeccccccCCHHHHHHHHHHHHh--C-CC-EEEcCcchhh
Confidence            59 9999999999998 3333222        12222   11111111222334444444433  2 33 4444555443


Q ss_pred             CCCCCCCCCccceEEEcCCCCc
Q 036857          121 IDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       121 lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      +-+..+  .+.|..|.+..|-.
T Consensus        71 ~~~~~l--~~ad~vI~Ld~p~~   90 (171)
T PRK07261         71 LYEERM--QEADQIIFLNFSRF   90 (171)
T ss_pred             hHHHHH--HHCCEEEEEcCCHH
Confidence            322333  27899999999866

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=97.28  E-value=0.00072  Score=53.62  Aligned_cols=43  Identities=23%  Similarity=0.383  Sum_probs=23.4

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHI  121 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~l  121 (170)
                      ..+|++||+-.+      ....+..++..+...    +..+++++-.+....+
T Consensus        94 ~~vliVDEasmv------~~~~~~~ll~~~~~~----~~klilvGD~~QL~pV  136 (196)
T PF13604_consen   94 KDVLIVDEASMV------DSRQLARLLRLAKKS----GAKLILVGDPNQLPPV  136 (196)
T ss_dssp             TSEEEESSGGG-------BHHHHHHHHHHS-T-----T-EEEEEE-TTSHHHC
T ss_pred             ccEEEEeccccc------CHHHHHHHHHHHHhc----CCEEEEECCcchhcCC
Confidence            479999999544      234455555544431    4467777777744333

>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]

Probab=97.26  E-value=0.002  Score=55.22  Aligned_cols=61  Identities=15%  Similarity=0.114  Sum_probs=36.9

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCC-------------CCCCCCCCCCCCccceEE
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDY-------------KDHIDPVPLRPSCMDMHF  135 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~-------------~~~lD~AllRpgR~d~~i  135 (170)
                      |.|+|+||+..+-      -.-++-|-..++.-     -..+||+|||+             |+-+++.++  +|+-..=
T Consensus       297 PGVLFIDEVhMLD------iEcFTyL~kalES~-----iaPivifAsNrG~~~irGt~d~~sPhGip~dll--DRl~Iir  363 (456)
T KOG1942|consen  297 PGVLFIDEVHMLD------IECFTYLHKALESP-----IAPIVIFASNRGMCTIRGTEDILSPHGIPPDLL--DRLLIIR  363 (456)
T ss_pred             CcceEeeehhhhh------hHHHHHHHHHhcCC-----CCceEEEecCCcceeecCCcCCCCCCCCCHHHh--hheeEEe
Confidence            9999999986541      11222233334332     34467777773             556777777  4776666


Q ss_pred             EcCCCCc
Q 036857          136 HLSSHTF  142 (170)
Q Consensus       136 ~~~~p~~  142 (170)
                      .++|++.
T Consensus       364 t~~y~~~  370 (456)
T KOG1942|consen  364 TLPYDEE  370 (456)
T ss_pred             eccCCHH
Confidence            6677666

>TIGR01818 ntrC nitrogen regulation protein NR(I)

Probab=97.24  E-value=0.0018  Score=57.06  Aligned_cols=15  Identities=33%  Similarity=0.326  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +||||+++|+++.
T Consensus       163 ~Ge~GtGK~~~A~~ih  178 (463)
T TIGR01818       163 NGESGTGKELVARALH  178 (463)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999997

This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.

>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A

Probab=97.22  E-value=0.0022  Score=52.54  Aligned_cols=94  Identities=14%  Similarity=0.074  Sum_probs=47.8

Q ss_pred             cc-CCCcHHHHHHHHH---ccccccccccC-----------------ceeEeeechhhhccCCccchHHHHHHHHH-hhc
Q 036857           43 WG-PYTGKSSLIAAMA---DLDLKEFQSNS-----------------RSILVIEDAVTSFESNAYNSVALSALLKF-VDG  100 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA---~~~l~~v~~~~-----------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~-lDg  100 (170)
                      +| +|||||.++|++|   +..+..+....                 .+-++|||++.+-.   ..-..+++.+.. .+.
T Consensus        38 ~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~GaW~cfdefnrl~~---~vLS~i~~~i~~i~~a  114 (231)
T PF12774_consen   38 SGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGAWLCFDEFNRLSE---EVLSVISQQIQSIQDA  114 (231)
T ss_dssp             ESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-EEEEETCCCSSH---HHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCchhhhhhhhhhhH---HHHHHHHHHHHHHHHh
Confidence            59 9999999999999   22222221111                 88999999998732   111122222222 222


Q ss_pred             hhcc------------CCCCeEEEEeCC----CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          101 LWSS------------SGDGRILVMTTD----YKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       101 ~~~~------------~~~~~~vi~tTN----~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      +...            ...+.-+++|.|    ....||+.+.   .+-+-+.+..||.
T Consensus       115 l~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk---~lFRpvam~~PD~  169 (231)
T PF12774_consen  115 LRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLK---ALFRPVAMMVPDL  169 (231)
T ss_dssp             HHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHC---TTEEEEE--S--H
T ss_pred             hcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHH---HHhheeEEeCCCH
Confidence            2221            011234667777    3457888876   6778999999997

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]

Probab=97.21  E-value=0.0011  Score=59.41  Aligned_cols=88  Identities=11%  Similarity=0.062  Sum_probs=52.5

Q ss_pred             CcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH------cccccc--------------cccc---
Q 036857           24 TSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA------DLDLKE--------------FQSN---   67 (170)
Q Consensus        24 ~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA------~~~l~~--------------v~~~---   67 (170)
                      ....+++....-+++...+            +| +||||..+||+|.      +-.+..              ++..   
T Consensus       139 ~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekG  218 (464)
T COG2204         139 LGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKG  218 (464)
T ss_pred             ccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhccccc
Confidence            3555555555555555444            69 9999999999999      111211              1111   


Q ss_pred             ----------------CceeEeeechhhhccCCccchHHHHHHHHHhh-chhcc------CCCCeEEEEeCCC
Q 036857           68 ----------------SRSILVIEDAVTSFESNAYNSVALSALLKFVD-GLWSS------SGDGRILVMTTDY  117 (170)
Q Consensus        68 ----------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lD-g~~~~------~~~~~~vi~tTN~  117 (170)
                                      ....||+|||..+      .-.....||..|. +-...      .+-++-||+|||.
T Consensus       219 AFTGA~~~r~G~fE~A~GGTLfLDEI~~m------pl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~  285 (464)
T COG2204         219 AFTGAITRRIGRFEQANGGTLFLDEIGEM------PLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNR  285 (464)
T ss_pred             CcCCcccccCcceeEcCCceEEeeccccC------CHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCc
Confidence                            0789999999765      3344555666554 11111      1225679999984

>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins

Probab=97.21  E-value=0.00021  Score=57.21  Aligned_cols=90  Identities=18%  Similarity=0.239  Sum_probs=50.9

Q ss_pred             cc-CCCcHHHHHHHHHccc----cccccccC-------ceeEeeechhhhccCCccchHHHHHHHHH-hhchh-------
Q 036857           43 WG-PYTGKSSLIAAMADLD----LKEFQSNS-------RSILVIEDAVTSFESNAYNSVALSALLKF-VDGLW-------  102 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA~~~----l~~v~~~~-------p~il~iDEiD~~~~~~~~~~~~~~~ll~~-lDg~~-------  102 (170)
                      .| .|+|||++.+.|+..-    +.....+.       .-|+.+||++.+..   .....+..+++. .|...       
T Consensus        58 ~G~QG~GKStf~~~L~~~~~~d~~~~~~~kd~~~~l~~~~iveldEl~~~~k---~~~~~lK~~iT~~~~~~R~pY~~~~  134 (198)
T PF05272_consen   58 VGKQGIGKSTFFRKLGPEYFSDSINDFDDKDFLEQLQGKWIVELDELDGLSK---KDVEALKSFITRRTDTYRPPYGRDP  134 (198)
T ss_pred             ecCCcccHHHHHHHHhHHhccCccccCCCcHHHHHHHHhHheeHHHHhhcch---hhHHHHHHHhcccceeeecCCcCcc
Confidence            49 9999999999998111    11111111       67999999998742   122233333322 22222       


Q ss_pred             ccCCCCeEEEEeCCCCCCC-CCCCCCCCccceEEEcC
Q 036857          103 SSSGDGRILVMTTDYKDHI-DPVPLRPSCMDMHFHLS  138 (170)
Q Consensus       103 ~~~~~~~~vi~tTN~~~~l-D~AllRpgR~d~~i~~~  138 (170)
                      ...+...++|+|||..+-| |+.=-|  || ..|++.
T Consensus       135 ~~~~R~~~figTtN~~~~L~D~TGnR--Rf-~~v~v~  168 (198)
T PF05272_consen  135 EEFPRRAVFIGTTNDDDFLKDPTGNR--RF-WPVEVS  168 (198)
T ss_pred             eeeceeEEEEeccCCcceeeCCCCCe--EE-EEEEEc
Confidence            1123346789999988744 555556  65 333443

>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]

Probab=97.21  E-value=0.00017  Score=65.17  Aligned_cols=111  Identities=15%  Similarity=0.151  Sum_probs=70.9

Q ss_pred             cccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHHc----------cccccccccC-----
Q 036857           27 TIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMAD----------LDLKEFQSNS-----   68 (170)
Q Consensus        27 ~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA~----------~~l~~v~~~~-----   68 (170)
                      ++-+++++|+.|+-.+                      .| ||+-||.|.+.+..          .+-+-|..++     
T Consensus       343 EIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAVmkD  422 (721)
T KOG0482|consen  343 EIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAVMKD  422 (721)
T ss_pred             hhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchhhhcC
Confidence            4567778887765444                      49 99999999999981          1112111111     


Q ss_pred             -----------------ceeEeeechhhhccCCccchHHHHHHHHHh------hchhccCCCCeEEEEeCCCCC------
Q 036857           69 -----------------RSILVIEDAVTSFESNAYNSVALSALLKFV------DGLWSSSGDGRILVMTTDYKD------  119 (170)
Q Consensus        69 -----------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~l------Dg~~~~~~~~~~vi~tTN~~~------  119 (170)
                                       ..|-+|||+|.+..   ..+....++.++-      -|+...-+...-|++|.|+..      
T Consensus       423 pvTgEM~LEGGALVLAD~GICCIDEfDKM~e---~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRYnpr  499 (721)
T KOG0482|consen  423 PVTGEMVLEGGALVLADGGICCIDEFDKMDE---SDRTAIHEVMEQQTISIAKAGINTTLNARTSILAAANPAYGRYNPR  499 (721)
T ss_pred             CCCCeeEeccceEEEccCceEeehhhhhhhh---hhhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcCccccccCcc
Confidence                             67788999999965   2233333333321      233333334567888999544      


Q ss_pred             -------CCCCCCCCCCccceEEEcC-CCCc
Q 036857          120 -------HIDPVPLRPSCMDMHFHLS-SHTF  142 (170)
Q Consensus       120 -------~lD~AllRpgR~d~~i~~~-~p~~  142 (170)
                             .||+||+.  |||...-+. .|+.
T Consensus       500 rs~e~NI~LPaALLS--RFDll~Li~D~pdr  528 (721)
T KOG0482|consen  500 RSPEQNINLPAALLS--RFDLLWLIQDRPDR  528 (721)
T ss_pred             cChhHhcCCcHHHHH--hhhhhhhhccCCcc
Confidence                   78999996  999876654 4766

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=97.18  E-value=0.00068  Score=55.58  Aligned_cols=15  Identities=33%  Similarity=0.379  Sum_probs=14.6

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      || +|+|||++|+.++
T Consensus        25 ~G~~G~GKT~LA~~~~   40 (287)
T PF00931_consen   25 VGMGGIGKTTLARQVA   40 (287)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             EcCCcCCcceeeeecc
Confidence            79 9999999999999

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=97.16  E-value=0.0022  Score=50.20  Aligned_cols=69  Identities=14%  Similarity=0.107  Sum_probs=33.7

Q ss_pred             ceeEeeechhhhc-cCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCC-----CCCCCCCCCCCCccceEEEcCCCCc
Q 036857           69 RSILVIEDAVTSF-ESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDY-----KDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus        69 p~il~iDEiD~~~-~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~-----~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      ..||+|||+|.+. . ..........+.+.++..... ..-.+|+++|+.     ...-...+.  +|+.. ++++.-+.
T Consensus       119 ~~iiviDe~~~~~~~-~~~~~~~~~~l~~~~~~~~~~-~~~~~v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~  193 (234)
T PF01637_consen  119 KVIIVIDEFQYLAIA-SEEDKDFLKSLRSLLDSLLSQ-QNVSIVITGSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSK  193 (234)
T ss_dssp             CEEEEEETGGGGGBC-TTTTHHHHHHHHHHHHH-----TTEEEEEEESSHHHHHHTT-TTSTTT--T---E-EEE----H
T ss_pred             cEEEEEecHHHHhhc-ccchHHHHHHHHHHHhhcccc-CCceEEEECCchHHHHHhhcccCccc--cccce-EEEeeCCH
Confidence            5999999999998 2 123345566777777774432 223344445441     112223333  57777 88877665

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]

Probab=97.13  E-value=0.00042  Score=63.97  Aligned_cols=72  Identities=11%  Similarity=0.171  Sum_probs=42.2

Q ss_pred             cc-CCCcHHHHHHHHH----------ccccccccccC----------------------ceeEeeechhhhccCCccchH
Q 036857           43 WG-PYTGKSSLIAAMA----------DLDLKEFQSNS----------------------RSILVIEDAVTSFESNAYNSV   89 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA----------~~~l~~v~~~~----------------------p~il~iDEiD~~~~~~~~~~~   89 (170)
                      .| ||||||.+.|.++          +.+-+.+..++                      ..|-+|||+|++-.+.   +.
T Consensus       488 ~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqD---Rt  564 (854)
T KOG0477|consen  488 LGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQD---RT  564 (854)
T ss_pred             ecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhcccc---cc
Confidence            49 9999999999999          22222222211                      7788999999996522   22


Q ss_pred             HHHHHHHH------hhchhccCCCCeEEEEeCCC
Q 036857           90 ALSALLKF------VDGLWSSSGDGRILVMTTDY  117 (170)
Q Consensus        90 ~~~~ll~~------lDg~~~~~~~~~~vi~tTN~  117 (170)
                      +..+-.++      =.|+..+.+....||+|+|+
T Consensus       565 SIHEAMEQQSISISKAGIVtsLqArctvIAAanP  598 (854)
T KOG0477|consen  565 SIHEAMEQQSISISKAGIVTSLQARCTVIAAANP  598 (854)
T ss_pred             hHHHHHHhcchhhhhhhHHHHHHhhhhhheecCC
Confidence            22222211      01222222345678999996

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.13  E-value=0.0016  Score=51.00  Aligned_cols=14  Identities=43%  Similarity=0.795  Sum_probs=13.8

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||+|||++++.+|
T Consensus        12 G~PGvGKtTl~~ki~   26 (179)
T COG1618          12 GRPGVGKTTLVLKIA   26 (179)
T ss_pred             CCCCccHHHHHHHHH
Confidence            9 9999999999999

>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=97.07  E-value=0.00088  Score=59.07  Aligned_cols=114  Identities=11%  Similarity=0.072  Sum_probs=66.8

Q ss_pred             CCCcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH----c--------cccc---------ccccc
Q 036857           22 PATSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA----D--------LDLK---------EFQSN   67 (170)
Q Consensus        22 p~~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA----~--------~~l~---------~v~~~   67 (170)
                      ...++++++....-+++++.+            +| +||||+.+|++|.    .        +|..         .++..
T Consensus        74 ~~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~  153 (403)
T COG1221          74 SEALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGH  153 (403)
T ss_pred             chhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhcc
Confidence            345777777766555555444            69 9999999999998    1        1111         11110


Q ss_pred             -------C------------ceeEeeechhhhccCCccchHHHHHHHHHhhch-----h--ccCCCCeEEEEeCC--CCC
Q 036857           68 -------S------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGL-----W--SSSGDGRILVMTTD--YKD  119 (170)
Q Consensus        68 -------~------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~-----~--~~~~~~~~vi~tTN--~~~  119 (170)
                             +            ...||+|||-.+-.      .....++..||.-     -  .....+|-+|+|||  ..+
T Consensus       154 ~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~------~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~  227 (403)
T COG1221         154 EKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPP------EGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEE  227 (403)
T ss_pred             ccceeecccCCcCchheecCCCEEehhhhhhCCH------hHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHH
Confidence                   0            78999999976643      3345566777641     1  11234677888877  222


Q ss_pred             CCCC--CCCCCCccceEEEcCCCCc
Q 036857          120 HIDP--VPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       120 ~lD~--AllRpgR~d~~i~~~~p~~  142 (170)
                      .+=.  -+.| -|+...|++|.--.
T Consensus       228 ~~~~g~dl~~-rl~~~~I~LPpLrE  251 (403)
T COG1221         228 AVLAGADLTR-RLNILTITLPPLRE  251 (403)
T ss_pred             HHHhhcchhh-hhcCceecCCChhh
Confidence            2322  3332 15666777765544

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=97.05  E-value=0.00036  Score=54.67  Aligned_cols=15  Identities=40%  Similarity=0.656  Sum_probs=11.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      || ||||||+++.+++
T Consensus        23 ~GpPGTGKT~~l~~~i   38 (236)
T PF13086_consen   23 QGPPGTGKTTTLASII   38 (236)
T ss_dssp             E-STTSSHHHHHHHHH
T ss_pred             ECCCCCChHHHHHHHH
Confidence            79 9999997666665

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.01  E-value=0.0023  Score=54.40  Aligned_cols=93  Identities=14%  Similarity=0.046  Sum_probs=49.2

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC--CCCCCCCCCCCCCccceEEEcCC--CCc-c
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD--YKDHIDPVPLRPSCMDMHFHLSS--HTF-R  143 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN--~~~~lD~AllRpgR~d~~i~~~~--p~~-~  143 (170)
                      .-+|+|||+..++.....   ...++++.+-.+.+..+-.++.++|-.  ..=.-|+.+-+  ||+... ++.  ++. .
T Consensus       146 vrmLIIDE~H~lLaGs~~---~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~~~~-Lp~W~~d~ef  219 (302)
T PF05621_consen  146 VRMLIIDEFHNLLAGSYR---KQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS--RFEPFE-LPRWELDEEF  219 (302)
T ss_pred             CcEEEeechHHHhcccHH---HHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh--ccCCcc-CCCCCCCcHH
Confidence            889999999998763333   344455555555332223445555433  22244676765  776432 221  111 4


Q ss_pred             hHHHHHHHHHhh---cCCCCHHHHHHh
Q 036857          144 HYLFEKIEERLA---KIQATPAEVPGE  167 (170)
Q Consensus       144 ~~l~~~~~~~~~---~~~~s~a~i~~~  167 (170)
                      ..+...++..++   .+.++..++...
T Consensus       220 ~~LL~s~e~~LPLr~~S~l~~~~la~~  246 (302)
T PF05621_consen  220 RRLLASFERALPLRKPSNLASPELARR  246 (302)
T ss_pred             HHHHHHHHHhCCCCCCCCCCCHHHHHH
Confidence            455566666664   223555555443

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PRK10365 transcriptional regulatory protein ZraR; Provisional

Probab=96.95  E-value=0.0046  Score=53.97  Aligned_cols=15  Identities=33%  Similarity=0.381  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| +||||+++|+++.
T Consensus       168 ~ge~g~gk~~~a~~ih  183 (441)
T PRK10365        168 HGDSGTGKELVARAIH  183 (441)
T ss_pred             EecCCCCHHHHHHHHH
Confidence            69 9999999999997

>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.94  E-value=0.0051  Score=52.19  Aligned_cols=114  Identities=15%  Similarity=0.132  Sum_probs=79.6

Q ss_pred             cCCCCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH------------------------ccc
Q 036857           16 SNKFEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA------------------------DLD   60 (170)
Q Consensus        16 ~~~~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA------------------------~~~   60 (170)
                      |++...|.+++.+..+++....+....          || +|+||-+.+.++-                        .+.
T Consensus         3 Wvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklE   82 (351)
T KOG2035|consen    3 WVDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLE   82 (351)
T ss_pred             chhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEE
Confidence            456788999999999999998887665          79 9999999998887                        133


Q ss_pred             cccccccC-------------------------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhc
Q 036857           61 LKEFQSNS-------------------------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWS  103 (170)
Q Consensus        61 l~~v~~~~-------------------------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~  103 (170)
                      ++.+.++.                                     --+++|-|+|.+..      ....+|-.-|+-.. 
T Consensus        83 istvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~------dAQ~aLRRTMEkYs-  155 (351)
T KOG2035|consen   83 ISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTR------DAQHALRRTMEKYS-  155 (351)
T ss_pred             EEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhH------HHHHHHHHHHHHHh-
Confidence            33333332                                     45888899998854      22233333444432 


Q ss_pred             cCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          104 SSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       104 ~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                         ++.-+|+.+|....+=+++..  |. .-|.++-|+.
T Consensus       156 ---~~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~  188 (351)
T KOG2035|consen  156 ---SNCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSD  188 (351)
T ss_pred             ---cCceEEEEecCcccchhHHhh--he-eEEeCCCCCH
Confidence               467788889999988888864  43 4566666666

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=96.88  E-value=0.0019  Score=48.38  Aligned_cols=82  Identities=16%  Similarity=0.103  Sum_probs=44.8

Q ss_pred             cccCChhhHHHhhcCc-----------------cc-CCCcHHHHHHHHH-ccccccccccCceeEeeechhhhccCCccc
Q 036857           27 TIATDFDMNKALVDDY-----------------WG-PYTGKSSLIAAMA-DLDLKEFQSNSRSILVIEDAVTSFESNAYN   87 (170)
Q Consensus        27 ~v~~~~~~k~~l~~~~-----------------~G-PGtGKT~la~aiA-~~~l~~v~~~~p~il~iDEiD~~~~~~~~~   87 (170)
                      .+.+++-.++.+...+                 +| ||||||.+++.|| .+.-.  ..++++|-.+.=- .-++..+..
T Consensus        26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~--G~~S~~V~~f~~~-~hFP~~~~v  102 (127)
T PF06309_consen   26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKS--GMKSPFVHQFIAT-HHFPHNSNV  102 (127)
T ss_pred             HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhc--ccCCCceeeeccc-ccCCCchHH
Confidence            3455555555555555                 59 9999999999999 11111  1122333222211 122333344


Q ss_pred             hHHHHHHHHHhhchhccCCCCeEE
Q 036857           88 SVALSALLKFVDGLWSSSGDGRIL  111 (170)
Q Consensus        88 ~~~~~~ll~~lDg~~~~~~~~~~v  111 (170)
                      ..-..+|-+.+-+....|+...+|
T Consensus       103 ~~Yk~~L~~~I~~~v~~C~rslFI  126 (127)
T PF06309_consen  103 DEYKEQLKSWIRGNVSRCPRSLFI  126 (127)
T ss_pred             HHHHHHHHHHHHHHHHhCCcCeee
Confidence            455566667777777666665544

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]

Probab=96.88  E-value=0.002  Score=58.16  Aligned_cols=34  Identities=21%  Similarity=0.202  Sum_probs=24.4

Q ss_pred             CcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH
Q 036857           24 TSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        24 ~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA   57 (170)
                      .++.+++....-.++...+            .| .||||..+||+|.
T Consensus       221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH  267 (550)
T COG3604         221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIH  267 (550)
T ss_pred             ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHH
Confidence            4556666555544454444            49 9999999999999

>PRK05917 DNA polymerase III subunit delta'; Validated

Probab=96.83  E-value=0.003  Score=53.46  Aligned_cols=60  Identities=18%  Similarity=0.287  Sum_probs=43.3

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHT  141 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~  141 (170)
                      .-|++||++|.+      +....+.||..|+.-    ++++++|..|+.++.|.|.++.  |+ ..+.|+.++
T Consensus        96 ~kv~ii~~ad~m------t~~AaNaLLK~LEEP----p~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~~~  155 (290)
T PRK05917         96 YKIYIIHEADRM------TLDAISAFLKVLEDP----PQHGVIILTSAKPQRLPPTIRS--RS-LSIHIPMEE  155 (290)
T ss_pred             ceEEEEechhhc------CHHHHHHHHHHhhcC----CCCeEEEEEeCChhhCcHHHHh--cc-eEEEccchh
Confidence            458888888876      345678888888774    5688999999999999888774  43 344555443

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=96.82  E-value=0.0013  Score=55.11  Aligned_cols=15  Identities=33%  Similarity=0.620  Sum_probs=14.5

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||+|||++.++++
T Consensus       117 ~g~~g~GKttl~~~l~  132 (270)
T TIGR02858       117 ISPPQCGKTTLLRDLA  132 (270)
T ss_pred             EcCCCCCHHHHHHHHh
Confidence            69 9999999999999

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=96.81  E-value=0.00066  Score=48.68  Aligned_cols=19  Identities=42%  Similarity=0.627  Sum_probs=16.0

Q ss_pred             cc-CCCcHHHHHHHHH-cccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDL   61 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l   61 (170)
                      .| ||+|||++|+.+| .+++
T Consensus         5 ~G~~gsGKST~a~~La~~~~~   25 (121)
T PF13207_consen    5 SGPPGSGKSTLAKELAERLGF   25 (121)
T ss_dssp             EESTTSSHHHHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHHHHHCC
Confidence            49 9999999999999 3444

...

>PRK07276 DNA polymerase III subunit delta'; Validated

Probab=96.81  E-value=0.003  Score=53.51  Aligned_cols=58  Identities=19%  Similarity=0.291  Sum_probs=44.7

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSS  139 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~  139 (170)
                      ..|++||++|.+      .....+.||..++.-    +.++++|.+|+.++.|-|-++.  |. .+|.|+.
T Consensus       105 ~kV~II~~ad~m------~~~AaNaLLKtLEEP----p~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~f~~  162 (290)
T PRK07276        105 QQVFIIKDADKM------HVNAANSLLKVIEEP----QSEIYIFLLTNDENKVLPTIKS--RT-QIFHFPK  162 (290)
T ss_pred             cEEEEeehhhhc------CHHHHHHHHHHhcCC----CCCeEEEEEECChhhCchHHHH--cc-eeeeCCC
Confidence            568999999877      345678899888774    4678999999999999888875  54 5666755

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=96.80  E-value=0.0012  Score=51.34  Aligned_cols=14  Identities=36%  Similarity=0.710  Sum_probs=13.4

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||+||||+++.++
T Consensus         6 G~pG~GKTTll~k~i   20 (168)
T PF03266_consen    6 GPPGVGKTTLLKKVI   20 (168)
T ss_dssp             S-TTSSHHHHHHHHH
T ss_pred             CcCCCCHHHHHHHHH
Confidence            9 9999999999988

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.79  E-value=0.001  Score=57.43  Aligned_cols=15  Identities=40%  Similarity=0.572  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +||||||+-|.||
T Consensus        35 lGPSGcGKSTlLr~IA   50 (338)
T COG3839          35 LGPSGCGKSTLLRMIA   50 (338)
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            39 9999999999999

>PRK05818 DNA polymerase III subunit delta'; Validated

Probab=96.77  E-value=0.004  Score=51.97  Aligned_cols=59  Identities=19%  Similarity=0.197  Sum_probs=43.1

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSH  140 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p  140 (170)
                      .-|++|+++|.+      .....+.||..++.-    +.++++|.+|+.++.|.|-++.  |.- .+.++.+
T Consensus        89 ~KV~II~~ae~m------~~~AaNaLLK~LEEP----p~~t~fiLit~~~~~lLpTI~S--RCq-~~~~~~~  147 (261)
T PRK05818         89 KKIYIIYGIEKL------NKQSANSLLKLIEEP----PKNTYGIFTTRNENNILNTILS--RCV-QYVVLSK  147 (261)
T ss_pred             CEEEEeccHhhh------CHHHHHHHHHhhcCC----CCCeEEEEEECChHhCchHhhh--hee-eeecCCh
Confidence            357777777765      345678888888764    5689999999999999999985  643 3555554

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=96.73  E-value=0.0026  Score=50.13  Aligned_cols=34  Identities=21%  Similarity=0.337  Sum_probs=22.5

Q ss_pred             c-CCCcHHHHHHHHHcccccccccc-----CceeEeeech
Q 036857           44 G-PYTGKSSLIAAMADLDLKEFQSN-----SRSILVIEDA   77 (170)
Q Consensus        44 G-PGtGKT~la~aiA~~~l~~v~~~-----~p~il~iDEi   77 (170)
                      | ||||||++++.++.+++..+..+     .+|+.=.||.
T Consensus         7 GTPGvGKTT~~~~L~~lg~~~i~l~el~~e~~~~~~~de~   46 (180)
T COG1936           7 GTPGVGKTTVCKLLRELGYKVIELNELAKENGLYTEYDEL   46 (180)
T ss_pred             CCCCCchHHHHHHHHHhCCceeeHHHHHHhcCCeeccCCc
Confidence            9 99999999999994444333222     2555555543

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=96.69  E-value=0.0053  Score=48.40  Aligned_cols=15  Identities=33%  Similarity=0.742  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||+|||+++..+|
T Consensus        18 ~G~~GsGKT~l~~~~~   33 (209)
T TIGR02237        18 YGPPGSGKTNICMILA   33 (209)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            69 9999999999988

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]

Probab=96.68  E-value=0.0037  Score=57.60  Aligned_cols=106  Identities=17%  Similarity=0.214  Sum_probs=70.0

Q ss_pred             cccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---------------ccccccc-ccc
Q 036857           27 TIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---------------DLDLKEF-QSN   67 (170)
Q Consensus        27 ~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---------------~~~l~~v-~~~   67 (170)
                      ++.+++.+|+.++-.+                      .| |.|-||.|.|.+-               +++|... ..+
T Consensus       302 SI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVTtD  381 (818)
T KOG0479|consen  302 SIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVTTD  381 (818)
T ss_pred             ccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEeec
Confidence            4567777887765444                      39 9999999999876               2333221 111


Q ss_pred             C----------------ceeEeeechhhhccCCccchHHHHHHHHHh------hchhccCCCCeEEEEeCCCCC------
Q 036857           68 S----------------RSILVIEDAVTSFESNAYNSVALSALLKFV------DGLWSSSGDGRILVMTTDYKD------  119 (170)
Q Consensus        68 ~----------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~l------Dg~~~~~~~~~~vi~tTN~~~------  119 (170)
                      .                ..|++|||+|.+..   ..+....++.++-      -|+-.+.+..+-|++|.|+..      
T Consensus       382 ~eTGERRLEAGAMVLADRGVVCIDEFDKMsD---iDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~Yd~~  458 (818)
T KOG0479|consen  382 QETGERRLEAGAMVLADRGVVCIDEFDKMSD---IDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQYDQS  458 (818)
T ss_pred             cccchhhhhcCceEEccCceEEehhcccccc---hhHHHHHHHHhcceEEeEeccchhhhccceeeeeecCccccccCCC
Confidence            1                88999999999854   2334445555431      233333345678999999665      


Q ss_pred             -------CCCCCCCCCCccceEEEc
Q 036857          120 -------HIDPVPLRPSCMDMHFHL  137 (170)
Q Consensus       120 -------~lD~AllRpgR~d~~i~~  137 (170)
                             .|+..|+.  |||..+-+
T Consensus       459 k~P~eNIgLpDSLLS--RFDLlFv~  481 (818)
T KOG0479|consen  459 KTPMENIGLPDSLLS--RFDLLFVV  481 (818)
T ss_pred             CChhhccCCcHHHHh--hhcEEEEE
Confidence                   57788885  99987765

>PRK13695 putative NTPase; Provisional

Probab=96.63  E-value=0.0052  Score=47.33  Aligned_cols=14  Identities=43%  Similarity=0.795  Sum_probs=13.1

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||+|||++++.++
T Consensus         7 G~~G~GKTTll~~i~   21 (174)
T PRK13695          7 GPPGVGKTTLVLKIA   21 (174)
T ss_pred             CCCCCCHHHHHHHHH
Confidence            9 9999999999976

>COG1485 Predicted ATPase [General function prediction only]

Probab=96.62  E-value=0.0028  Score=54.99  Aligned_cols=70  Identities=24%  Similarity=0.483  Sum_probs=43.2

Q ss_pred             cc-CCCcHHHHHHHHH-ccc-------------------cccccccC-------------ceeEeeechhhhccCCccch
Q 036857           43 WG-PYTGKSSLIAAMA-DLD-------------------LKEFQSNS-------------RSILVIEDAVTSFESNAYNS   88 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~-------------------l~~v~~~~-------------p~il~iDEiD~~~~~~~~~~   88 (170)
                      || =|+|||+|.-..- .+.                   +.......             -.||+|||+..-   .-...
T Consensus        71 ~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~~~~vLCfDEF~Vt---DI~DA  147 (367)
T COG1485          71 WGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAAETRVLCFDEFEVT---DIADA  147 (367)
T ss_pred             ECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHhcCCEEEeeeeeec---ChHHH
Confidence            89 9999999987776 111                   11111111             779999999521   11223


Q ss_pred             HHHHHHHHHhhchhccCCCCeEEEEeCC-CCCCC
Q 036857           89 VALSALLKFVDGLWSSSGDGRILVMTTD-YKDHI  121 (170)
Q Consensus        89 ~~~~~ll~~lDg~~~~~~~~~~vi~tTN-~~~~l  121 (170)
                      ..++.|+++|   .   ..+|++++|+| .|+.|
T Consensus       148 MiL~rL~~~L---f---~~GV~lvaTSN~~P~~L  175 (367)
T COG1485         148 MILGRLLEAL---F---ARGVVLVATSNTAPDNL  175 (367)
T ss_pred             HHHHHHHHHH---H---HCCcEEEEeCCCChHHh
Confidence            3455555544   3   25999999999 55554

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=96.61  E-value=0.0049  Score=51.02  Aligned_cols=15  Identities=40%  Similarity=0.490  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +||||||++|++|
T Consensus        39 vGeSGsGKSTL~r~l~   54 (252)
T COG1124          39 VGESGSGKSTLARLLA   54 (252)
T ss_pred             EcCCCCCHHHHHHHHh
Confidence            49 9999999999999

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=96.57  E-value=0.0072  Score=48.73  Aligned_cols=15  Identities=40%  Similarity=0.317  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||||||+++..++
T Consensus        31 ~G~~GsGKt~l~~~~~   46 (234)
T PRK06067         31 EGDHGTGKSVLSQQFV   46 (234)
T ss_pred             ECCCCCChHHHHHHHH
Confidence            69 9999999999997

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=96.57  E-value=0.0027  Score=59.72  Aligned_cols=15  Identities=33%  Similarity=0.494  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +||||||++|.+.
T Consensus       505 vG~SGsGKSTL~KLL~  520 (709)
T COG2274         505 VGRSGSGKSTLLKLLL  520 (709)
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999999

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=96.57  E-value=0.0059  Score=50.53  Aligned_cols=15  Identities=33%  Similarity=0.654  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||||||++++.++
T Consensus        22 ~G~~G~GKTTLlr~I~   37 (249)
T cd01128          22 VAPPKAGKTTLLQSIA   37 (249)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999999

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=96.53  E-value=0.0013  Score=48.32  Aligned_cols=15  Identities=47%  Similarity=0.702  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|+.++
T Consensus         5 ~G~pgsGKSt~a~~l~   20 (143)
T PF13671_consen    5 CGPPGSGKSTLAKRLA   20 (143)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999998

...

>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]

Probab=96.52  E-value=0.0054  Score=58.89  Aligned_cols=62  Identities=16%  Similarity=0.147  Sum_probs=39.5

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCC-CCCCCCccceEEEcCCCCc
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDP-VPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~-AllRpgR~d~~i~~~~p~~  142 (170)
                      ..||++||+|.++......-..++++..         ...+-+|+|+|....... ++.   |-++-++|..|+.
T Consensus       429 ~~vil~devD~~~~~dRg~v~~l~~l~~---------ks~~Piv~~cndr~~p~sr~~~---~~~~~l~f~kP~~  491 (871)
T KOG1968|consen  429 HFLILMDEVDGMFGEDRGGVSKLSSLCK---------KSSRPLVCTCNDRNLPKSRALS---RACSDLRFSKPSS  491 (871)
T ss_pred             eeEEEEeccccccchhhhhHHHHHHHHH---------hccCCeEEEecCCCCccccchh---hhcceeeecCCcH
Confidence            3499999999987722222223333333         134567888887766655 555   4447788888888

>TIGR02012 tigrfam_recA protein RecA

Probab=96.51  E-value=0.0053  Score=52.69  Aligned_cols=46  Identities=13%  Similarity=0.228  Sum_probs=29.7

Q ss_pred             ceeEeeechhhhccCC-----------ccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857           69 RSILVIEDAVTSFESN-----------AYNSVALSALLKFVDGLWSSSGDGRILVMTTD  116 (170)
Q Consensus        69 p~il~iDEiD~~~~~~-----------~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN  116 (170)
                      +.+|++|-+-++.+..           +...+.+++++..|.+...  ..++.+|+|.-
T Consensus       134 ~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~--~~~~tvi~tNQ  190 (321)
T TIGR02012       134 VDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALS--KSNTTAIFINQ  190 (321)
T ss_pred             CcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHH--hCCCEEEEEec
Confidence            8899999998887520           1123455667776777655  35777777643

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>cd01394 radB RadB

Probab=96.51  E-value=0.01  Score=47.16  Aligned_cols=15  Identities=40%  Similarity=0.782  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||+|||+++..+|
T Consensus        25 ~G~~GsGKT~l~~~~a   40 (218)
T cd01394          25 YGPPGTGKTNIAIQLA   40 (218)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            69 9999999999998

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=96.50  E-value=0.0026  Score=52.94  Aligned_cols=36  Identities=8%  Similarity=0.004  Sum_probs=29.0

Q ss_pred             CCCcccccCChhhHHHhhcCc---------cc-CCCcHHHHHHHHH
Q 036857           22 PATSNTIATDFDMNKALVDDY---------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        22 p~~~~~v~~~~~~k~~l~~~~---------~G-PGtGKT~la~aiA   57 (170)
                      +.+++++.+.+++.+.+...+         -| +|+|||++.+++.
T Consensus        56 ~~~l~~lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all  101 (264)
T cd01129          56 ILDLEKLGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSAL  101 (264)
T ss_pred             CCCHHHcCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHH
Confidence            457889999988887665444         39 9999999999886

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.48  E-value=0.0062  Score=55.65  Aligned_cols=43  Identities=16%  Similarity=0.064  Sum_probs=36.2

Q ss_pred             ccCCCCCCCCcccccCChhhHHHhhcCc-----------------cc-CCCcHHHHHHHHH
Q 036857           15 NSNKFEHPATSNTIATDFDMNKALVDDY-----------------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        15 ~~~~~~~p~~~~~v~~~~~~k~~l~~~~-----------------~G-PGtGKT~la~aiA   57 (170)
                      .++....|++.++++++...-.++...+                 -| +|||||+.++.++
T Consensus        71 lW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLs  131 (634)
T KOG1970|consen   71 LWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLS  131 (634)
T ss_pred             hhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHH
Confidence            4778999999999999987766665544                 29 9999999999999

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=96.48  E-value=0.0089  Score=48.61  Aligned_cols=46  Identities=17%  Similarity=0.429  Sum_probs=27.0

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYK  118 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~  118 (170)
                      |.++++||+-.+.... ........+.+.+..+..   .+..+++|++..
T Consensus       118 ~~~lVIDe~t~~l~~~-~d~~~~~~l~~~l~~l~~---~g~tvi~t~~~~  163 (230)
T PRK08533        118 KDVIIIDSLSSLISND-ASEVAVNDLMAFFKRISS---LNKVIILTANPK  163 (230)
T ss_pred             CCEEEEECccHHhcCC-cchHHHHHHHHHHHHHHh---CCCEEEEEeccc
Confidence            7889999997765321 112233455555555543   255777777744

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=96.47  E-value=0.0016  Score=46.64  Aligned_cols=15  Identities=33%  Similarity=0.623  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|+.++
T Consensus         4 ~G~~GsGKtTia~~L~   19 (129)
T PF13238_consen    4 SGIPGSGKTTIAKELA   19 (129)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999999

...

>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]

Probab=96.42  E-value=0.0052  Score=55.93  Aligned_cols=91  Identities=22%  Similarity=0.284  Sum_probs=52.7

Q ss_pred             c-CCCcHHHHHHHHH-----------------ccccccccccC---------------ceeEeeechhhhccCCccchHH
Q 036857           44 G-PYTGKSSLIAAMA-----------------DLDLKEFQSNS---------------RSILVIEDAVTSFESNAYNSVA   90 (170)
Q Consensus        44 G-PGtGKT~la~aiA-----------------~~~l~~v~~~~---------------p~il~iDEiD~~~~~~~~~~~~   90 (170)
                      | |||-||.+.+.+-                 ++.-+.+.+..               ..|++|||+|.+=.   +.+..
T Consensus       371 GDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre---~DRVA  447 (729)
T KOG0481|consen  371 GDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMRE---DDRVA  447 (729)
T ss_pred             cCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccCc---hhhhH
Confidence            9 9999999998876                 11111111111               88999999999844   33333


Q ss_pred             HHHHHHH------hhchhccCCCCeEEEEeCCCCC-----------CCC--CCCCCCCccceEEEcCC
Q 036857           91 LSALLKF------VDGLWSSSGDGRILVMTTDYKD-----------HID--PVPLRPSCMDMHFHLSS  139 (170)
Q Consensus        91 ~~~ll~~------lDg~~~~~~~~~~vi~tTN~~~-----------~lD--~AllRpgR~d~~i~~~~  139 (170)
                      ..+-.++      =.|+..-.+...-|++|.|.+-           .||  +-++.  |||+.+-+.-
T Consensus       448 IHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILS--RFDmIFIVKD  513 (729)
T KOG0481|consen  448 IHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILS--RFDMIFIVKD  513 (729)
T ss_pred             HHHHHHhhhHHHhhhcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhh--hccEEEEEec
Confidence            3332222      1233222234556888888442           233  45564  9998877653

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.41  E-value=0.0049  Score=47.21  Aligned_cols=46  Identities=13%  Similarity=0.364  Sum_probs=26.4

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHID  122 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD  122 (170)
                      |.++++||--+-+.     ......+.+.+..+..   .+..+|++|...+.+.
T Consensus       101 p~illlDEP~~~LD-----~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~~~  146 (163)
T cd03216         101 ARLLILDEPTAALT-----PAEVERLFKVIRRLRA---QGVAVIFISHRLDEVF  146 (163)
T ss_pred             CCEEEEECCCcCCC-----HHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHH
Confidence            99999999854433     2233344444444432   2556677777665443

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=96.40  E-value=0.0016  Score=50.54  Aligned_cols=15  Identities=53%  Similarity=0.678  Sum_probs=14.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| ||||||+++..+|
T Consensus        13 tGTPG~GKstl~~~la   28 (176)
T KOG3347|consen   13 TGTPGTGKSTLAERLA   28 (176)
T ss_pred             eCCCCCCchhHHHHHH
Confidence            49 9999999999999

>PHA02774 E1; Provisional

Probab=96.39  E-value=0.0072  Score=55.71  Aligned_cols=78  Identities=22%  Similarity=0.200  Sum_probs=43.2

Q ss_pred             cc-CCCcHHHHHHHHH-cc---ccccccccC---------ceeEeeechhhhccCCccchHHHHHHHHHhhchhc----c
Q 036857           43 WG-PYTGKSSLIAAMA-DL---DLKEFQSNS---------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWS----S  104 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~---~l~~v~~~~---------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~----~  104 (170)
                      || ||||||++|-+|+ -+   -+..+..++         ..|+++||+-.     ....-.-..+-+.+||-.-    .
T Consensus       440 ~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s~FwLqpl~d~ki~vlDD~t~-----~~w~y~d~~Lrn~LdG~~v~lD~K  514 (613)
T PHA02774        440 YGPPDTGKSMFCMSLIKFLKGKVISFVNSKSHFWLQPLADAKIALLDDATH-----PCWDYIDTYLRNALDGNPVSIDCK  514 (613)
T ss_pred             ECCCCCCHHHHHHHHHHHhCCCEEEEEECccccccchhccCCEEEEecCcc-----hHHHHHHHHHHHHcCCCcceeeec
Confidence            79 9999999999999 11   111111121         66999999921     1111222235567777620    0


Q ss_pred             CC-----CCeEEEEeCCCCCCCCCCC
Q 036857          105 SG-----DGRILVMTTDYKDHIDPVP  125 (170)
Q Consensus       105 ~~-----~~~~vi~tTN~~~~lD~Al  125 (170)
                      +.     ...-+|+|||---.-++..
T Consensus       515 hk~~~q~k~pPlIITSN~d~~~~~~~  540 (613)
T PHA02774        515 HKAPVQIKCPPLLITSNIDVKAEDRY  540 (613)
T ss_pred             ccCcccccCCCEEEecCCCcccchhh
Confidence            00     1135889999433334444

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=96.38  E-value=0.0017  Score=56.36  Aligned_cols=14  Identities=36%  Similarity=0.612  Sum_probs=13.9

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | +||||||+-|.||
T Consensus        38 GPSGcGKTTlLR~IA   52 (352)
T COG3842          38 GPSGCGKTTLLRMIA   52 (352)
T ss_pred             CCCCCCHHHHHHHHh
Confidence            9 9999999999999

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.38  E-value=0.013  Score=45.97  Aligned_cols=48  Identities=10%  Similarity=0.233  Sum_probs=27.4

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPV  124 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~A  124 (170)
                      |.++++||--+-+.     ......+.+.+.....   .+..+|++|+..+.+..|
T Consensus       142 p~~lllDEP~~~LD-----~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~i~~~  189 (195)
T PRK13541        142 SDLWLLDEVETNLS-----KENRDLLNNLIVMKAN---SGGIVLLSSHLESSIKSA  189 (195)
T ss_pred             CCEEEEeCCcccCC-----HHHHHHHHHHHHHHHh---CCCEEEEEeCCccccchh
Confidence            88888888754432     2223334444432222   356778888877766554

>KOG2383 consensus Predicted ATPase [General function prediction only]

Probab=96.37  E-value=0.0079  Score=53.17  Aligned_cols=43  Identities=19%  Similarity=0.398  Sum_probs=23.8

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC-CCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD-YKDH  120 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN-~~~~  120 (170)
                      -++|+|||+-.-   .-.....+++|   +..+.   ..++++++|+| +|+.
T Consensus       194 a~lLCFDEfQVT---DVADAmiL~rL---f~~Lf---~~GvVlvATSNR~P~d  237 (467)
T KOG2383|consen  194 AILLCFDEFQVT---DVADAMILKRL---FEHLF---KNGVVLVATSNRAPED  237 (467)
T ss_pred             ceeeeechhhhh---hHHHHHHHHHH---HHHHH---hCCeEEEEeCCCChHH
Confidence            789999999211   00111122222   22333   36999999999 4443

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=96.36  E-value=0.0075  Score=46.67  Aligned_cols=28  Identities=18%  Similarity=0.447  Sum_probs=19.1

Q ss_pred             c-CCCcHHHHHHHHHccccccccccCceeEeee
Q 036857           44 G-PYTGKSSLIAAMADLDLKEFQSNSRSILVIE   75 (170)
Q Consensus        44 G-PGtGKT~la~aiA~~~l~~v~~~~p~il~iD   75 (170)
                      | ||+|||++|+++.    ..++.....+.+||
T Consensus         9 GlsGsGKtTlA~~L~----~~L~~~g~~~~~LD   37 (156)
T PF01583_consen    9 GLSGSGKTTLARALE----RRLFARGIKVYLLD   37 (156)
T ss_dssp             SSTTSSHHHHHHHHH----HHHHHTTS-EEEEE
T ss_pred             CCCCCCHHHHHHHHH----HHHHHcCCcEEEec
Confidence            9 9999999999998    23333334455554

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.35  E-value=0.0036  Score=54.82  Aligned_cols=52  Identities=15%  Similarity=0.200  Sum_probs=31.7

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPL  126 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~All  126 (170)
                      ..+||||..-..     .....+.+.+..+.+.... ...++|+-+|+..+.++..+.
T Consensus       216 ~DlVLIDTaG~~-----~~d~~l~e~La~L~~~~~~-~~~lLVLsAts~~~~l~evi~  267 (374)
T PRK14722        216 KHMVLIDTIGMS-----QRDRTVSDQIAMLHGADTP-VQRLLLLNATSHGDTLNEVVQ  267 (374)
T ss_pred             CCEEEEcCCCCC-----cccHHHHHHHHHHhccCCC-CeEEEEecCccChHHHHHHHH
Confidence            678888887422     2223455566666554321 234677778888888876654

>PRK07132 DNA polymerase III subunit delta'; Validated

Probab=96.34  E-value=0.012  Score=49.90  Aligned_cols=61  Identities=20%  Similarity=0.299  Sum_probs=44.7

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      .-|+++|++|.+      .....+.||..|+..    +..+++|++|+.++.|-|.+..  |. ..++|..++.
T Consensus        91 ~KvvII~~~e~m------~~~a~NaLLK~LEEP----p~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~  151 (299)
T PRK07132         91 KKILIIKNIEKT------SNSLLNALLKTIEEP----PKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQ  151 (299)
T ss_pred             ceEEEEeccccc------CHHHHHHHHHHhhCC----CCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCH
Confidence            457888887765      334567888888775    5688888888888999888775  33 4578888766

>PHA00729 NTP-binding motif containing protein

Probab=96.33  E-value=0.0021  Score=52.66  Aligned_cols=15  Identities=27%  Similarity=0.488  Sum_probs=14.5

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||||||++|.++|
T Consensus        23 tG~pGvGKT~LA~aLa   38 (226)
T PHA00729         23 FGKQGSGKTTYALKVA   38 (226)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            69 9999999999999

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.30  E-value=0.0071  Score=50.67  Aligned_cols=15  Identities=33%  Similarity=0.277  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +||||||++|.+.
T Consensus        45 VGESG~GKSTlgr~i~   60 (268)
T COG4608          45 VGESGCGKSTLGRLIL   60 (268)
T ss_pred             EecCCCCHHHHHHHHH
Confidence            39 9999999999999

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []

Probab=96.29  E-value=0.0069  Score=48.87  Aligned_cols=15  Identities=47%  Similarity=0.366  Sum_probs=13.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|||||++|-+.|
T Consensus        25 ~G~AGTGKT~LA~a~A   40 (205)
T PF02562_consen   25 NGPAGTGKTFLALAAA   40 (205)
T ss_dssp             E--TTSSTTHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHH
Confidence            59 9999999999999

; GO: 0005524 ATP binding; PDB: 3B85_A.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=96.23  E-value=0.003  Score=57.19  Aligned_cols=45  Identities=13%  Similarity=0.204  Sum_probs=31.2

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHI  121 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~l  121 (170)
                      |.++++||=++-+..     .--.++.+.|..+..   .+..+|..|.+|..+
T Consensus       491 P~lvVLDEPNsNLD~-----~GE~AL~~Ai~~~k~---rG~~vvviaHRPs~L  535 (580)
T COG4618         491 PFLVVLDEPNSNLDS-----EGEAALAAAILAAKA---RGGTVVVIAHRPSAL  535 (580)
T ss_pred             CcEEEecCCCCCcch-----hHHHHHHHHHHHHHH---cCCEEEEEecCHHHH
Confidence            999999998765542     223456777777775   467777777777643

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=96.17  E-value=0.0032  Score=41.60  Aligned_cols=14  Identities=36%  Similarity=0.558  Sum_probs=13.7

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||+|||+++++++
T Consensus         6 G~~gsGKst~~~~l~   20 (69)
T cd02019           6 GGSGSGKSTVAKKLA   20 (69)
T ss_pred             CCCCCCHHHHHHHHH
Confidence            9 9999999999998

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]

Probab=96.16  E-value=0.012  Score=56.61  Aligned_cols=29  Identities=31%  Similarity=0.466  Sum_probs=18.9

Q ss_pred             cCChhhHHHhhcCc--------cc-CCCcHHHHHHHHH
Q 036857           29 ATDFDMNKALVDDY--------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        29 ~~~~~~k~~l~~~~--------~G-PGtGKT~la~aiA   57 (170)
                      -++.++++.+...+        .| ||||||++.-++.
T Consensus       669 ~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LI  706 (1100)
T KOG1805|consen  669 RLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLI  706 (1100)
T ss_pred             hcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHH
Confidence            44555555555444        49 9999999765555

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=96.14  E-value=0.013  Score=50.38  Aligned_cols=46  Identities=9%  Similarity=0.213  Sum_probs=29.1

Q ss_pred             ceeEeeechhhhccCCc-----------cchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857           69 RSILVIEDAVTSFESNA-----------YNSVALSALLKFVDGLWSSSGDGRILVMTTD  116 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~-----------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN  116 (170)
                      +.+|++|=+-++.+..+           ...+.+++++..|-+...  ..++.+|+|..
T Consensus       134 ~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~--k~~~~vI~tNQ  190 (325)
T cd00983         134 VDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSIN--KSNTTVIFINQ  190 (325)
T ss_pred             CCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHH--hCCCEEEEEEc
Confidence            88999999888875110           123455667776766654  35677777643

RecA couples ATP hydrolysis to DNA strand exchange.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.12  E-value=0.0055  Score=48.77  Aligned_cols=44  Identities=14%  Similarity=0.277  Sum_probs=26.6

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD  119 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~  119 (170)
                      |.|+++||+-+-+..  .+.+.++.++-..  +.   ++++-++.-|..++
T Consensus       152 P~ILLLDE~TsALD~--~nkr~ie~mi~~~--v~---~q~vAv~WiTHd~d  195 (223)
T COG4619         152 PKILLLDEITSALDE--SNKRNIEEMIHRY--VR---EQNVAVLWITHDKD  195 (223)
T ss_pred             CceEEecCchhhcCh--hhHHHHHHHHHHH--hh---hhceEEEEEecChH
Confidence            999999999776652  3344444443221  11   35777777776543

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=96.11  E-value=0.013  Score=51.16  Aligned_cols=15  Identities=47%  Similarity=0.634  Sum_probs=13.9

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||+|||+++..+|
T Consensus        88 ~G~pG~GKStLllq~a  103 (372)
T cd01121          88 GGDPGIGKSTLLLQVA  103 (372)
T ss_pred             EeCCCCCHHHHHHHHH
Confidence            59 9999999999888

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PRK03839 putative kinase; Provisional

Probab=96.11  E-value=0.0032  Score=48.65  Aligned_cols=15  Identities=33%  Similarity=0.514  Sum_probs=14.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.+|
T Consensus         6 ~G~pGsGKsT~~~~La   21 (180)
T PRK03839          6 TGTPGVGKTTVSKLLA   21 (180)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>PRK06217 hypothetical protein; Validated

Probab=96.09  E-value=0.0038  Score=48.59  Aligned_cols=20  Identities=40%  Similarity=0.514  Sum_probs=16.6

Q ss_pred             cc-CCCcHHHHHHHHH-ccccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDLK   62 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l~   62 (170)
                      .| ||+|||++|+++| .+++.
T Consensus         7 ~G~~GsGKSTla~~L~~~l~~~   28 (183)
T PRK06217          7 TGASGSGTTTLGAALAERLDIP   28 (183)
T ss_pred             ECCCCCCHHHHHHHHHHHcCCc
Confidence            49 9999999999999 44443

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=96.09  E-value=0.0032  Score=58.12  Aligned_cols=38  Identities=18%  Similarity=0.141  Sum_probs=32.7

Q ss_pred             CCCCCcccccCChhhHHHhhcCc----------------cc-CCCcHHHHHHHHH
Q 036857           20 EHPATSNTIATDFDMNKALVDDY----------------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        20 ~~p~~~~~v~~~~~~k~~l~~~~----------------~G-PGtGKT~la~aiA   57 (170)
                      .+-.-|++..+.++.+++++..+                .| ||+|||++|++||
T Consensus        70 ~ry~fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la  124 (644)
T PRK15455         70 KRYPAFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLK  124 (644)
T ss_pred             ccccchhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHH
Confidence            34446889999999999998776                39 9999999999999

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.09  E-value=0.014  Score=45.83  Aligned_cols=15  Identities=33%  Similarity=0.452  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+|||++.+.++
T Consensus        31 ~G~nGsGKSTLl~~l~   46 (177)
T cd03222          31 VGPNGTGKTTAVKILA   46 (177)
T ss_pred             ECCCCChHHHHHHHHH
Confidence            39 9999999999999

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.08  E-value=0.029  Score=44.40  Aligned_cols=47  Identities=13%  Similarity=0.352  Sum_probs=28.1

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDP  123 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~  123 (170)
                      |.++++||--.-+.     ......+.+.+..+..   .+..+|++|...+.++.
T Consensus       146 p~llllDEPt~~LD-----~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~  192 (207)
T PRK13539        146 RPIWILDEPTAALD-----AAAVALFAELIRAHLA---QGGIVIAATHIPLGLPG  192 (207)
T ss_pred             CCEEEEeCCcccCC-----HHHHHHHHHHHHHHHH---CCCEEEEEeCCchhhcc
Confidence            77888887743322     2333444455544432   35678888888877765

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=96.02  E-value=0.019  Score=44.17  Aligned_cols=15  Identities=33%  Similarity=0.421  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+|||++.++++
T Consensus        34 ~G~nGsGKStLl~~l~   49 (173)
T cd03246          34 IGPSGSGKSTLARLIL   49 (173)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=96.00  E-value=0.02  Score=46.04  Aligned_cols=53  Identities=11%  Similarity=0.219  Sum_probs=28.0

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVP  125 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~Al  125 (170)
                      |+++++||+-+-... ........++++.+   .........+|++|...+.+....
T Consensus       109 ~slvllDE~~~gtd~-~~~~~~~~ail~~l---~~~~~~~~~vli~TH~~~l~~~~~  161 (213)
T cd03281         109 RSLVLIDEFGKGTDT-EDGAGLLIATIEHL---LKRGPECPRVIVSTHFHELFNRSL  161 (213)
T ss_pred             CcEEEeccccCCCCH-HHHHHHHHHHHHHH---HhcCCCCcEEEEEcChHHHHHhhh
Confidence            999999998543221 01112222333333   221012457888888777665554

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]

Probab=96.00  E-value=0.013  Score=48.77  Aligned_cols=14  Identities=43%  Similarity=0.859  Sum_probs=13.5

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||||||++.|-+|
T Consensus       144 gpP~~GKTTlLRdia  158 (308)
T COG3854         144 GPPQVGKTTLLRDIA  158 (308)
T ss_pred             cCCCCChHHHHHHHH
Confidence            9 9999999999998

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=96.00  E-value=0.015  Score=44.68  Aligned_cols=45  Identities=16%  Similarity=0.364  Sum_probs=27.0

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHID  122 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD  122 (170)
                      |.++++||--.-+.     ......+.+.+..+.    .+..+|++|+..+.+.
T Consensus       115 p~llllDEP~~gLD-----~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~  159 (171)
T cd03228         115 PPILILDEATSALD-----PETEALILEALRALA----KGKTVIVIAHRLSTIR  159 (171)
T ss_pred             CCEEEEECCCcCCC-----HHHHHHHHHHHHHhc----CCCEEEEEecCHHHHH
Confidence            89999999744332     233344444454442    2467788888777653

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK08233 hypothetical protein; Provisional

Probab=95.98  E-value=0.004  Score=47.58  Aligned_cols=88  Identities=14%  Similarity=0.211  Sum_probs=44.6

Q ss_pred             c-CCCcHHHHHHHHH-ccccccccccCceeEeeechhhh---------cc-CCccchHHHHHHHHHhhchhccCCCCeEE
Q 036857           44 G-PYTGKSSLIAAMA-DLDLKEFQSNSRSILVIEDAVTS---------FE-SNAYNSVALSALLKFVDGLWSSSGDGRIL  111 (170)
Q Consensus        44 G-PGtGKT~la~aiA-~~~l~~v~~~~p~il~iDEiD~~---------~~-~~~~~~~~~~~ll~~lDg~~~~~~~~~~v  111 (170)
                      | ||+|||++|+.+| .+..       ..++.+|..+.-         .. ........+..+.+.+.......+.+ ++
T Consensus        10 G~~GsGKtTla~~L~~~l~~-------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~v   81 (182)
T PRK08233         10 AVSGGGKTTLTERLTHKLKN-------SKALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAKSNVD-YI   81 (182)
T ss_pred             CCCCCCHHHHHHHHHhhCCC-------CceEEECCEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcCCCce-EE
Confidence            9 9999999999999 2221       244455544210         01 01111223344555555544321113 34


Q ss_pred             EEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          112 VMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       112 i~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      |+-.... ...+.+.  ..+|..|.+..|..
T Consensus        82 ivd~~~~-~~~~~~~--~~~d~~i~l~~~~~  109 (182)
T PRK08233         82 IVDYPFA-YLNSEMR--QFIDVTIFIDTPLD  109 (182)
T ss_pred             EEeeehh-hccHHHH--HHcCEEEEEcCCHH
Confidence            4333222 2222222  36899999998877

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=95.98  E-value=0.0099  Score=44.67  Aligned_cols=15  Identities=40%  Similarity=0.519  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+|||++.++++
T Consensus        32 ~G~nGsGKStLl~~l~   47 (144)
T cd03221          32 VGRNGAGKSTLLKLIA   47 (144)
T ss_pred             ECCCCCCHHHHHHHHc
Confidence            39 9999999999999

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=95.94  E-value=0.012  Score=54.45  Aligned_cols=37  Identities=27%  Similarity=0.368  Sum_probs=26.3

Q ss_pred             CCCCcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH
Q 036857           21 HPATSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        21 ~p~~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA   57 (170)
                      +-.+|+++.+.....+.+++.+            -| +|||||++.||||
T Consensus       391 ~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaia  440 (604)
T COG4178         391 HGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALA  440 (604)
T ss_pred             ceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHh
Confidence            3345777755555544555555            29 9999999999999

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=95.92  E-value=0.02  Score=44.31  Aligned_cols=46  Identities=17%  Similarity=0.296  Sum_probs=26.6

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHI  121 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~l  121 (170)
                      |.++++||--.-+.     ......+.+.+..+..  ..+..+|++|.+.+.+
T Consensus       116 p~llllDEP~~~LD-----~~~~~~~~~~l~~~~~--~~~~tiii~sh~~~~~  161 (180)
T cd03214         116 PPILLLDEPTSHLD-----IAHQIELLELLRRLAR--ERGKTVVMVLHDLNLA  161 (180)
T ss_pred             CCEEEEeCCccCCC-----HHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHH
Confidence            99999999854433     2233344444444432  1245677777766654

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=95.92  E-value=0.014  Score=44.99  Aligned_cols=15  Identities=33%  Similarity=0.581  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+|||+++++++
T Consensus        34 ~G~nGsGKStLl~~l~   49 (178)
T cd03247          34 LGRSGSGKSTLLQLLT   49 (178)
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            39 9999999999999

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=95.91  E-value=0.0043  Score=47.15  Aligned_cols=15  Identities=60%  Similarity=0.882  Sum_probs=13.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||||||+++++++
T Consensus         5 ~G~~stGKTTL~~~L~   20 (163)
T PF13521_consen    5 TGGPSTGKTTLIEALA   20 (163)
T ss_dssp             E--TTSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>PRK06762 hypothetical protein; Provisional

Probab=95.90  E-value=0.0046  Score=47.00  Aligned_cols=15  Identities=20%  Similarity=0.439  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|+.++
T Consensus         8 ~G~~GsGKST~A~~L~   23 (166)
T PRK06762          8 RGNSGSGKTTIAKQLQ   23 (166)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999998

>PRK13947 shikimate kinase; Provisional

Probab=95.90  E-value=0.005  Score=46.89  Aligned_cols=20  Identities=30%  Similarity=0.325  Sum_probs=16.5

Q ss_pred             cc-CCCcHHHHHHHHH-ccccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDLK   62 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l~   62 (170)
                      .| ||||||++++.+| .++..
T Consensus         7 ~G~~GsGKst~a~~La~~lg~~   28 (171)
T PRK13947          7 IGFMGTGKTTVGKRVATTLSFG   28 (171)
T ss_pred             EcCCCCCHHHHHHHHHHHhCCC
Confidence            59 9999999999999 44443

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=95.89  E-value=0.0085  Score=52.33  Aligned_cols=15  Identities=40%  Similarity=0.578  Sum_probs=14.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|||||++.|+||
T Consensus        51 lGpsGsGKSTLLr~Ia   66 (377)
T PRK11607         51 LGASGCGKSTLLRMLA   66 (377)
T ss_pred             ECCCCCcHHHHHHHHh
Confidence            49 9999999999999

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.88  E-value=0.023  Score=46.60  Aligned_cols=39  Identities=10%  Similarity=0.407  Sum_probs=27.2

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTT  115 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tT  115 (170)
                      |.|++|||-=+-+.     ...+.++|..|-.+..   ++.-.+..|
T Consensus       155 P~vmLFDEPTSALD-----PElv~EVL~vm~~LA~---eGmTMivVT  193 (240)
T COG1126         155 PKVMLFDEPTSALD-----PELVGEVLDVMKDLAE---EGMTMIIVT  193 (240)
T ss_pred             CCEEeecCCcccCC-----HHHHHHHHHHHHHHHH---cCCeEEEEe
Confidence            99999999855433     4567888888888875   344444444

>PRK00131 aroK shikimate kinase; Reviewed

Probab=95.88  E-value=0.0047  Score=46.63  Aligned_cols=15  Identities=33%  Similarity=0.317  Sum_probs=14.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||||||++|+++|
T Consensus        10 ~G~~GsGKstla~~La   25 (175)
T PRK00131         10 IGFMGAGKSTIGRLLA   25 (175)
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            49 9999999999999

>PF13245 AAA_19: Part of AAA domain

Probab=95.87  E-value=0.0053  Score=41.71  Aligned_cols=15  Identities=53%  Similarity=0.727  Sum_probs=10.8

Q ss_pred             cc-CCCcHHH-HHHHHH
Q 036857           43 WG-PYTGKSS-LIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~-la~aiA   57 (170)
                      .| ||||||+ +++.++
T Consensus        16 ~g~pGtGKT~~~~~~i~   32 (76)
T PF13245_consen   16 QGPPGTGKTTTLAARIA   32 (76)
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49 9999995 444444

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.86  E-value=0.031  Score=43.96  Aligned_cols=48  Identities=6%  Similarity=0.297  Sum_probs=27.8

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPV  124 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~A  124 (170)
                      |.++++||--.-+.     ......+.+.+.....   .+..+|++|...+.++.+
T Consensus       146 p~~lilDEP~~~LD-----~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~~~~~  193 (200)
T PRK13540        146 AKLWLLDEPLVALD-----ELSLLTIITKIQEHRA---KGGAVLLTSHQDLPLNKA  193 (200)
T ss_pred             CCEEEEeCCCcccC-----HHHHHHHHHHHHHHHH---cCCEEEEEeCCchhcccc
Confidence            88888888744332     2333344444444432   355678888877776653

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=95.85  E-value=0.0046  Score=48.46  Aligned_cols=21  Identities=38%  Similarity=0.621  Sum_probs=16.9

Q ss_pred             c-CCCcHHHHHHHHH-ccccccc
Q 036857           44 G-PYTGKSSLIAAMA-DLDLKEF   64 (170)
Q Consensus        44 G-PGtGKT~la~aiA-~~~l~~v   64 (170)
                      | ||||||++|+-+| .+++..+
T Consensus         7 G~pGsG~TTva~~lAe~~gl~~v   29 (179)
T COG1102           7 GLPGSGKTTVARELAEHLGLKLV   29 (179)
T ss_pred             cCCCCChhHHHHHHHHHhCCcee
Confidence            8 9999999999999 4444443

>PRK11823 DNA repair protein RadA; Provisional

Probab=95.85  E-value=0.021  Score=51.04  Aligned_cols=15  Identities=47%  Similarity=0.634  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||+|||+++..+|
T Consensus        86 ~G~pG~GKTtL~lq~a  101 (446)
T PRK11823         86 GGDPGIGKSTLLLQVA  101 (446)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999998

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=95.84  E-value=0.016  Score=45.99  Aligned_cols=45  Identities=18%  Similarity=0.169  Sum_probs=26.4

Q ss_pred             ceeEeeechhhhccCC---c----cchHHHHHHHHHhhchhccCCCCeEEEEeC
Q 036857           69 RSILVIEDAVTSFESN---A----YNSVALSALLKFVDGLWSSSGDGRILVMTT  115 (170)
Q Consensus        69 p~il~iDEiD~~~~~~---~----~~~~~~~~ll~~lDg~~~~~~~~~~vi~tT  115 (170)
                      +.+|+||-+-.+....   .    .....+.+++..|..+..  ..++.+|+|+
T Consensus       115 ~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~--~~~~~vi~tn  166 (226)
T cd01393         115 VDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLAD--KFNVAVVFTN  166 (226)
T ss_pred             eeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHH--HhCcEEEEEE
Confidence            5688888887775411   1    112445666666776654  3456666554

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=95.83  E-value=0.014  Score=44.03  Aligned_cols=47  Identities=15%  Similarity=0.395  Sum_probs=28.2

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDP  123 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~  123 (170)
                      |.++++||...-+.     ......+.+.+.....   .+..++++|...+.+..
T Consensus        99 ~~i~ilDEp~~~lD-----~~~~~~l~~~l~~~~~---~~~tii~~sh~~~~~~~  145 (157)
T cd00267          99 PDLLLLDEPTSGLD-----PASRERLLELLRELAE---EGRTVIIVTHDPELAEL  145 (157)
T ss_pred             CCEEEEeCCCcCCC-----HHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHH
Confidence            99999999965443     2333444444444433   24567777777665544

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=95.83  E-value=0.018  Score=59.08  Aligned_cols=83  Identities=18%  Similarity=0.253  Sum_probs=54.4

Q ss_pred             c-CCCcHHHHHHHHH--------ccccc------cccccC----------------------ceeEeeechhhhccCCcc
Q 036857           44 G-PYTGKSSLIAAMA--------DLDLK------EFQSNS----------------------RSILVIEDAVTSFESNAY   86 (170)
Q Consensus        44 G-PGtGKT~la~aiA--------~~~l~------~v~~~~----------------------p~il~iDEiD~~~~~~~~   86 (170)
                      | ||+|||+++.|+|        +++++      .++...                      ..-+++||+.-      .
T Consensus      1550 GsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNL------a 1623 (4600)
T COG5271        1550 GSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINL------A 1623 (4600)
T ss_pred             CCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhh------h
Confidence            9 9999999999999        33332      222221                      56788899963      2


Q ss_pred             chHHHHHHHHHhhc-----------hhccCCCCeEEEEeCCCCC------CCCCCCCCCCccceEE
Q 036857           87 NSVALSALLKFVDG-----------LWSSSGDGRILVMTTDYKD------HIDPVPLRPSCMDMHF  135 (170)
Q Consensus        87 ~~~~~~~ll~~lDg-----------~~~~~~~~~~vi~tTN~~~------~lD~AllRpgR~d~~i  135 (170)
                      ++.++..|-.++|-           ... +-.+..|++|.|+.+      .||..++-  ||-+..
T Consensus      1624 SQSVlEGLNacLDhR~eayIPEld~~f~-~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFsvV~ 1686 (4600)
T COG5271        1624 SQSVLEGLNACLDHRREAYIPELDKTFD-VHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFSVVK 1686 (4600)
T ss_pred             HHHHHHHHHHHHhhccccccccccceee-ccCCeeeeeecCchhcCCCcccCCHHHhh--hhheEE
Confidence            45566666666553           222 234677888888655      78999884  876543

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=95.81  E-value=0.022  Score=50.48  Aligned_cols=15  Identities=33%  Similarity=0.567  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||+|||++++.|+
T Consensus       175 vgppGvGKTTLaK~Ia  190 (416)
T PRK09376        175 VAPPKAGKTVLLQNIA  190 (416)
T ss_pred             eCCCCCChhHHHHHHH
Confidence            59 9999999999999

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=95.81  E-value=0.027  Score=43.29  Aligned_cols=45  Identities=7%  Similarity=0.364  Sum_probs=26.5

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHI  121 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~l  121 (170)
                      |.|+++||--+-+.     ......+++.+..+..   .+..+|++|..++.+
T Consensus       114 p~illlDEPt~~LD-----~~~~~~l~~~l~~~~~---~g~tiii~th~~~~~  158 (173)
T cd03230         114 PELLILDEPTSGLD-----PESRREFWELLRELKK---EGKTILLSSHILEEA  158 (173)
T ss_pred             CCEEEEeCCccCCC-----HHHHHHHHHHHHHHHH---CCCEEEEECCCHHHH
Confidence            89999999855433     2333445555555543   245667777765544

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.80  E-value=0.02  Score=49.46  Aligned_cols=64  Identities=14%  Similarity=0.210  Sum_probs=37.6

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccc-----eEEEcCCCCc
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMD-----MHFHLSSHTF  142 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d-----~~i~~~~p~~  142 (170)
                      |.|+++||.=+-+.+- --.....+||..-+.+     .+.+|+.|    ++||+|+.=-.|+-     ..+..+.|.+
T Consensus       183 ~~IlLMDEaFSALDPL-IR~~mQdeLl~Lq~~l-----~KTIvFit----HDLdEAlriG~rIaimkdG~ivQ~Gtp~e  251 (386)
T COG4175         183 PDILLMDEAFSALDPL-IRTEMQDELLELQAKL-----KKTIVFIT----HDLDEALRIGDRIAIMKDGEIVQVGTPEE  251 (386)
T ss_pred             CCEEEecCchhhcChH-HHHHHHHHHHHHHHHh-----CCeEEEEe----cCHHHHHhccceEEEecCCeEEEeCCHHH
Confidence            9999999983333210 1123344455544444     35566665    78899884333432     4678888877

>cd01131 PilT Pilus retraction ATPase PilT

Probab=95.80  E-value=0.033  Score=44.10  Aligned_cols=15  Identities=47%  Similarity=0.534  Sum_probs=13.7

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| +|+|||+++++++
T Consensus         7 ~GptGSGKTTll~~ll   22 (198)
T cd01131           7 TGPTGSGKSTTLAAMI   22 (198)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999988

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=95.77  E-value=0.013  Score=53.53  Aligned_cols=54  Identities=17%  Similarity=0.287  Sum_probs=31.8

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLS  138 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~  138 (170)
                      |.|+++||.-+-+.     ..+-..+.+.+....    .+..+|+.|.+++.     ++  ..|..+.+.
T Consensus       490 ~~iliLDEpts~LD-----~~t~~~i~~~l~~~~----~~~tvIiitHr~~~-----~~--~~D~ii~l~  543 (588)
T PRK13657        490 PPILILDEATSALD-----VETEAKVKAALDELM----KGRTTFIIAHRLST-----VR--NADRILVFD  543 (588)
T ss_pred             CCEEEEeCCccCCC-----HHHHHHHHHHHHHHh----cCCEEEEEEecHHH-----HH--hCCEEEEEE
Confidence            99999999976544     223334445454442    24566666666642     33  567766664

>PRK14532 adenylate kinase; Provisional

Probab=95.76  E-value=0.0062  Score=47.25  Aligned_cols=20  Identities=20%  Similarity=0.486  Sum_probs=16.3

Q ss_pred             cc-CCCcHHHHHHHHH-ccccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDLK   62 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l~   62 (170)
                      .| ||+|||++|+.+| ..++.
T Consensus         6 ~G~pGsGKsT~a~~la~~~g~~   27 (188)
T PRK14532          6 FGPPAAGKGTQAKRLVEERGMV   27 (188)
T ss_pred             ECCCCCCHHHHHHHHHHHcCCe
Confidence            59 9999999999999 33433

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=95.76  E-value=0.017  Score=51.90  Aligned_cols=15  Identities=33%  Similarity=0.570  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| +|+||||+++.++
T Consensus       367 vG~SGsGKSTLl~lL~  382 (529)
T TIGR02868       367 LGPSGSGKSTLLMLLT  382 (529)
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            39 9999999999999

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK09354 recA recombinase A; Provisional

Probab=95.76  E-value=0.022  Score=49.52  Aligned_cols=15  Identities=27%  Similarity=0.496  Sum_probs=13.8

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      || ||||||+++..++
T Consensus        66 ~G~~GsGKTtLal~~~   81 (349)
T PRK09354         66 YGPESSGKTTLALHAI   81 (349)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            79 9999999998877

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=95.76  E-value=0.0056  Score=47.01  Aligned_cols=15  Identities=27%  Similarity=0.452  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.+|
T Consensus         9 ~G~~GsGKsTl~~~l~   24 (188)
T TIGR01360         9 VGGPGSGKGTQCEKIV   24 (188)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PF14516 AAA_35: AAA-like domain

Probab=95.75  E-value=0.18  Score=43.19  Aligned_cols=15  Identities=27%  Similarity=0.363  Sum_probs=13.7

Q ss_pred             ceeEeeechhhhccC
Q 036857           69 RSILVIEDAVTSFES   83 (170)
Q Consensus        69 p~il~iDEiD~~~~~   83 (170)
                      |-||+|||+|.++..
T Consensus       128 ~lVL~iDEiD~l~~~  142 (331)
T PF14516_consen  128 PLVLFIDEIDRLFEY  142 (331)
T ss_pred             CEEEEEechhhhccC
Confidence            899999999999873

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=95.74  E-value=0.0059  Score=45.55  Aligned_cols=15  Identities=40%  Similarity=0.479  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|+.++
T Consensus         5 ~G~~GsGKST~a~~l~   20 (150)
T cd02021           5 MGVSGSGKSTVGKALA   20 (150)
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            49 9999999999999

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=95.73  E-value=0.0059  Score=46.99  Aligned_cols=21  Identities=24%  Similarity=0.499  Sum_probs=16.9

Q ss_pred             cc-CCCcHHHHHHHHH-cccccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDLKE   63 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l~~   63 (170)
                      .| ||+|||++|+.+| ..++..
T Consensus         5 ~G~pGsGKst~a~~la~~~~~~~   27 (183)
T TIGR01359         5 LGGPGSGKGTQCAKIVENFGFTH   27 (183)
T ss_pred             ECCCCCCHHHHHHHHHHHcCCeE
Confidence            59 9999999999999 444433

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=95.71  E-value=0.0094  Score=53.60  Aligned_cols=34  Identities=24%  Similarity=0.306  Sum_probs=30.8

Q ss_pred             CcccccCChhhHHHhhcCc-----cc-CCCcHHHHHHHHH
Q 036857           24 TSNTIATDFDMNKALVDDY-----WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        24 ~~~~v~~~~~~k~~l~~~~-----~G-PGtGKT~la~aiA   57 (170)
                      ++++-.+++.++++|.+..     -| ||.|||++|+|+|
T Consensus       245 ~ledY~L~dkl~eRL~eraeGILIAG~PGaGKsTFaqAlA  284 (604)
T COG1855         245 SLEDYGLSDKLKERLEERAEGILIAGAPGAGKSTFAQALA  284 (604)
T ss_pred             chhhcCCCHHHHHHHHhhhcceEEecCCCCChhHHHHHHH
Confidence            5888899999999998755     49 9999999999999

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=95.71  E-value=0.014  Score=54.48  Aligned_cols=54  Identities=15%  Similarity=0.334  Sum_probs=31.4

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLS  138 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~  138 (170)
                      |.|+++||.-+-+.     ..+-..+.+.+....    .+..+|+.|++++.+     +  .+|..+.+.
T Consensus       612 ~~ililDEpts~LD-----~~~~~~i~~~l~~~~----~~~t~i~itH~~~~~-----~--~~d~ii~l~  665 (694)
T TIGR01846       612 PRILIFDEATSALD-----YESEALIMRNMREIC----RGRTVIIIAHRLSTV-----R--ACDRIIVLE  665 (694)
T ss_pred             CCEEEEECCCcCCC-----HHHHHHHHHHHHHHh----CCCEEEEEeCChHHH-----H--hCCEEEEEe
Confidence            99999999854333     233344445554442    256677777776544     2  355555553

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.70  E-value=0.028  Score=46.19  Aligned_cols=15  Identities=33%  Similarity=0.521  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|||||++.|++-
T Consensus        39 IGPSGcGKST~LR~lN   54 (253)
T COG1117          39 IGPSGCGKSTLLRCLN   54 (253)
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            49 9999999999998

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=95.66  E-value=0.0094  Score=48.71  Aligned_cols=39  Identities=13%  Similarity=0.306  Sum_probs=23.8

Q ss_pred             c-CCCcHHHHHHHHH------ccccccccccCceeEeeechhhhcc
Q 036857           44 G-PYTGKSSLIAAMA------DLDLKEFQSNSRSILVIEDAVTSFE   82 (170)
Q Consensus        44 G-PGtGKT~la~aiA------~~~l~~v~~~~p~il~iDEiD~~~~   82 (170)
                      | ||+|||++|+-+|      ......+..++...+.=||.+-+..
T Consensus         8 GyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~k   53 (261)
T COG4088           8 GYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILK   53 (261)
T ss_pred             cCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHH
Confidence            9 9999999999999      1222222222334444566654443

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=95.66  E-value=0.029  Score=45.03  Aligned_cols=45  Identities=9%  Similarity=0.006  Sum_probs=27.3

Q ss_pred             ceeEeeechhhhccCC--ccchHHHHHHHHHhhchhccCCCCeEEEEeC
Q 036857           69 RSILVIEDAVTSFESN--AYNSVALSALLKFVDGLWSSSGDGRILVMTT  115 (170)
Q Consensus        69 p~il~iDEiD~~~~~~--~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tT  115 (170)
                      +.+|+||=+..+....  ......+..+...|-.+..  ..++.+++++
T Consensus       124 ~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~--~~~~~ii~~~  170 (242)
T cd00984         124 LGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAK--ELNVPVIALS  170 (242)
T ss_pred             CCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHH--HhCCeEEEec
Confidence            7899999888765432  2233445666666666654  2456666655

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=95.65  E-value=0.036  Score=43.61  Aligned_cols=50  Identities=14%  Similarity=0.339  Sum_probs=29.8

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPL  126 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~All  126 (170)
                      |.++++||--+-+.     ......+.+.+.....   .+..+|++|.++..+..+.-
T Consensus       144 p~llllDEPt~~LD-----~~~~~~l~~~l~~~~~---~g~tiii~sH~~~~~~~~~~  193 (201)
T cd03231         144 RPLWILDEPTTALD-----KAGVARFAEAMAGHCA---RGGMVVLTTHQDLGLSEAGA  193 (201)
T ss_pred             CCEEEEeCCCCCCC-----HHHHHHHHHHHHHHHh---CCCEEEEEecCchhhhhccc
Confidence            88888888754433     2333444444544432   35567778887777666544

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK00625 shikimate kinase; Provisional

Probab=95.65  E-value=0.0066  Score=47.48  Aligned_cols=15  Identities=47%  Similarity=0.656  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| ||+|||++++.+|
T Consensus         6 iG~pGsGKTT~~k~La   21 (173)
T PRK00625          6 CGLPTVGKTSFGKALA   21 (173)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999999

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=95.65  E-value=0.015  Score=52.03  Aligned_cols=53  Identities=17%  Similarity=0.290  Sum_probs=33.2

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCc
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSC  130 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR  130 (170)
                      |.++++||+++.+..-     +.-.+...+-.+.-  ..+.-+++.|++++-++.  +||++
T Consensus       526 pn~~~iDEF~AhLD~~-----TA~rVArkiselaR--e~giTlivvThrpEv~~A--L~PD~  578 (593)
T COG2401         526 PNVLLIDEFAAHLDEL-----TAVRVARKISELAR--EAGITLIVVTHRPEVGNA--LRPDT  578 (593)
T ss_pred             CCcEEhhhhhhhcCHH-----HHHHHHHHHHHHHH--HhCCeEEEEecCHHHHhc--cCCce
Confidence            8999999999987622     12222233333321  246678888899887775  55544

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=95.64  E-value=0.0069  Score=44.49  Aligned_cols=20  Identities=35%  Similarity=0.423  Sum_probs=16.3

Q ss_pred             cc-CCCcHHHHHHHHH-ccccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDLK   62 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l~   62 (170)
                      .| ||+|||++|+.+| .+++.
T Consensus         5 ~G~~GsGKst~a~~la~~~~~~   26 (147)
T cd02020           5 DGPAGSGKSTVAKLLAKKLGLP   26 (147)
T ss_pred             ECCCCCCHHHHHHHHHHHhCCc
Confidence            49 9999999999999 34443

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=95.63  E-value=0.013  Score=53.32  Aligned_cols=55  Identities=9%  Similarity=0.213  Sum_probs=32.4

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSS  139 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~  139 (170)
                      |.|+++||.=+-+.     ..+-..+.+.+....    .+..+|+.|.+++.+     +  .+|..+.+..
T Consensus       504 ~~IliLDE~TSaLD-----~~te~~i~~~l~~~~----~~~TvIiItHrl~~i-----~--~aD~Iivl~~  558 (588)
T PRK11174        504 CQLLLLDEPTASLD-----AHSEQLVMQALNAAS----RRQTTLMVTHQLEDL-----A--QWDQIWVMQD  558 (588)
T ss_pred             CCEEEEeCCccCCC-----HHHHHHHHHHHHHHh----CCCEEEEEecChHHH-----H--hCCEEEEEeC
Confidence            99999999965443     223334445555542    245566667766443     2  5677776643

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=95.62  E-value=0.027  Score=47.16  Aligned_cols=15  Identities=27%  Similarity=0.578  Sum_probs=13.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|+.|+
T Consensus         7 ~G~P~SGKTt~a~~L~   22 (270)
T PF08433_consen    7 CGLPCSGKTTRAKELK   22 (270)
T ss_dssp             E--TTSSHHHHHHHHH
T ss_pred             EcCCCCcHHHHHHHHH
Confidence            59 9999999999998

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=95.62  E-value=0.018  Score=52.27  Aligned_cols=55  Identities=15%  Similarity=0.250  Sum_probs=31.2

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSS  139 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~  139 (170)
                      |.|+++||.-+-+..     .+-..+.+.+-...    .+..+|+.|.+++     .++  .+|..+.+..
T Consensus       499 ~~ililDEptsaLD~-----~t~~~i~~~l~~~~----~~~tvI~VtHr~~-----~~~--~~D~Ii~l~~  553 (582)
T PRK11176        499 SPILILDEATSALDT-----ESERAIQAALDELQ----KNRTSLVIAHRLS-----TIE--KADEILVVED  553 (582)
T ss_pred             CCEEEEECccccCCH-----HHHHHHHHHHHHHh----CCCEEEEEecchH-----HHH--hCCEEEEEEC
Confidence            999999998665542     22223333333332    2455666666653     343  6777777754

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=95.62  E-value=0.007  Score=45.84  Aligned_cols=15  Identities=40%  Similarity=0.614  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|+.++
T Consensus         4 ~G~~GsGKSTla~~l~   19 (163)
T TIGR01313         4 MGVAGSGKSTIASALA   19 (163)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=95.59  E-value=0.0071  Score=46.50  Aligned_cols=14  Identities=36%  Similarity=0.565  Sum_probs=13.8

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||||||+++++++
T Consensus         2 G~sGsGKSTla~~la   16 (163)
T PRK11545          2 GVSGSGKSAVASEVA   16 (163)
T ss_pred             CCCCCcHHHHHHHHH
Confidence            9 9999999999999

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=95.56  E-value=0.035  Score=44.37  Aligned_cols=15  Identities=33%  Similarity=0.521  Sum_probs=13.6

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||||||+++..++
T Consensus        25 ~G~~GsGKT~l~~q~l   40 (226)
T PF06745_consen   25 SGPPGSGKTTLALQFL   40 (226)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             EeCCCCCcHHHHHHHH
Confidence            59 9999999998877

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=95.55  E-value=0.019  Score=52.43  Aligned_cols=15  Identities=33%  Similarity=0.452  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| .|+|||++++.++
T Consensus       373 vG~SGsGKSTLl~lL~  388 (592)
T PRK10790        373 VGHTGSGKSTLASLLM  388 (592)
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            39 9999999999999

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=95.52  E-value=0.029  Score=48.55  Aligned_cols=15  Identities=40%  Similarity=0.510  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++.|+||
T Consensus        36 lG~sGsGKSTLLr~ia   51 (356)
T PRK11650         36 VGPSGCGKSTLLRMVA   51 (356)
T ss_pred             ECCCCCcHHHHHHHHH
Confidence            49 9999999999999

>PF13479 AAA_24: AAA domain

Probab=95.52  E-value=0.0082  Score=48.07  Aligned_cols=16  Identities=38%  Similarity=0.785  Sum_probs=14.1

Q ss_pred             ccc-CCCcHHHHHHHHH
Q 036857           42 YWG-PYTGKSSLIAAMA   57 (170)
Q Consensus        42 ~~G-PGtGKT~la~aiA   57 (170)
                      +|| ||+|||++|+.+-
T Consensus         8 IyG~~G~GKTt~a~~~~   24 (213)
T PF13479_consen    8 IYGPPGSGKTTLAASLP   24 (213)
T ss_pred             EECCCCCCHHHHHHhCC
Confidence            389 9999999999884

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=95.51  E-value=0.008  Score=44.64  Aligned_cols=19  Identities=32%  Similarity=0.357  Sum_probs=16.0

Q ss_pred             cc-CCCcHHHHHHHHH-cccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDL   61 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l   61 (170)
                      .| ||+|||++|+.+| .+++
T Consensus         5 ~G~~GsGKstla~~la~~l~~   25 (154)
T cd00464           5 IGMMGAGKTTVGRLLAKALGL   25 (154)
T ss_pred             EcCCCCCHHHHHHHHHHHhCC
Confidence            49 9999999999999 4443

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.47  E-value=0.04  Score=43.44  Aligned_cols=47  Identities=11%  Similarity=0.280  Sum_probs=27.6

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDP  123 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~  123 (170)
                      |.++++||--.-+.     ......+.+.+.....   .+..+|++|.+.+.++.
T Consensus       148 p~llllDEPt~~LD-----~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~i~~  194 (204)
T PRK13538        148 APLWILDEPFTAID-----KQGVARLEALLAQHAE---QGGMVILTTHQDLPVAS  194 (204)
T ss_pred             CCEEEEeCCCccCC-----HHHHHHHHHHHHHHHH---CCCEEEEEecChhhhcc
Confidence            88888888754332     2223334444443332   24567888888887766

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=95.47  E-value=0.0083  Score=46.26  Aligned_cols=15  Identities=40%  Similarity=0.505  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| ||+|||++|+.++
T Consensus         8 ~G~~gsGKst~a~~l~   23 (175)
T cd00227           8 NGGSSAGKSSIARALQ   23 (175)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999999

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK12608 transcription termination factor Rho; Provisional

Probab=95.46  E-value=0.03  Score=49.16  Aligned_cols=15  Identities=33%  Similarity=0.576  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||||||++++.+|
T Consensus       139 vG~pGtGKTTLl~~la  154 (380)
T PRK12608        139 VAPPRAGKTVLLQQIA  154 (380)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999987

>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]

Probab=95.45  E-value=0.032  Score=49.08  Aligned_cols=107  Identities=17%  Similarity=0.217  Sum_probs=66.8

Q ss_pred             cccCCCCCCCCcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH-----------cccc--------
Q 036857           14 WNSNKFEHPATSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA-----------DLDL--------   61 (170)
Q Consensus        14 w~~~~~~~p~~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA-----------~~~l--------   61 (170)
                      ...+.+.+...|+.++.....-+.++...            .| -||||-++||+-.           .++.        
T Consensus       192 ~~~~~~~~~~~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~a  271 (511)
T COG3283         192 LQNVAAQDVSGFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAA  271 (511)
T ss_pred             HhhcccccccchHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHh
Confidence            35567778889999987766655555444            49 9999999999876           1111        


Q ss_pred             -ccccccC--------------ceeEeeechhhhccCCccchHHHHHHHHHh-hchhccCCC------CeEEEEeCC--C
Q 036857           62 -KEFQSNS--------------RSILVIEDAVTSFESNAYNSVALSALLKFV-DGLWSSSGD------GRILVMTTD--Y  117 (170)
Q Consensus        62 -~~v~~~~--------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~l-Dg~~~~~~~------~~~vi~tTN--~  117 (170)
                       ++++..+              ..-+|+|||-.+      +.+....+|.++ ||..-.-++      +|-||+||.  .
T Consensus       272 EsElFG~apg~~gk~GffE~AngGTVlLDeIgEm------Sp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL  345 (511)
T COG3283         272 ESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEM------SPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNL  345 (511)
T ss_pred             HHHHhcCCCCCCCccchhhhccCCeEEeehhhhc------CHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccH
Confidence             1222211              667889999543      445666677766 555433333      467888885  3


Q ss_pred             CCCCCCCCC
Q 036857          118 KDHIDPVPL  126 (170)
Q Consensus       118 ~~~lD~All  126 (170)
                      .+.++..-.
T Consensus       346 ~~lv~~g~f  354 (511)
T COG3283         346 VELVQKGKF  354 (511)
T ss_pred             HHHHhcCch
Confidence            344454444

>PRK13889 conjugal transfer relaxase TraA; Provisional

Probab=95.44  E-value=0.031  Score=54.54  Aligned_cols=30  Identities=23%  Similarity=0.243  Sum_probs=23.0

Q ss_pred             ccCChhhHHHhhcCc--------cc-CCCcHHHHHHHHH
Q 036857           28 IATDFDMNKALVDDY--------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        28 v~~~~~~k~~l~~~~--------~G-PGtGKT~la~aiA   57 (170)
                      ..+.+++++.+...+        -| ||||||++.+++.
T Consensus       345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~  383 (988)
T PRK13889        345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAR  383 (988)
T ss_pred             CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHH
Confidence            347888888765444        49 9999999988775

>PRK04040 adenylate kinase; Provisional

Probab=95.41  E-value=0.0085  Score=47.35  Aligned_cols=15  Identities=27%  Similarity=0.479  Sum_probs=14.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||||||++++.++
T Consensus         8 ~G~pG~GKtt~~~~l~   23 (188)
T PRK04040          8 TGVPGVGKTTVLNKAL   23 (188)
T ss_pred             EeCCCCCHHHHHHHHH
Confidence            69 9999999999998

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=95.41  E-value=0.023  Score=51.14  Aligned_cols=15  Identities=33%  Similarity=0.477  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| +|+|||++++.++
T Consensus       354 vG~sGsGKSTL~~ll~  369 (529)
T TIGR02857       354 VGPSGAGKSTLLNLLL  369 (529)
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            39 9999999999999

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK06851 hypothetical protein; Provisional

Probab=95.39  E-value=0.03  Score=48.94  Aligned_cols=39  Identities=18%  Similarity=0.339  Sum_probs=30.5

Q ss_pred             HhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCC
Q 036857           97 FVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSS  139 (170)
Q Consensus        97 ~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~  139 (170)
                      .+||+.-  ++-.+.|+..+.|+.+||  .+||=+|..|.++.
T Consensus        72 slDgvii--p~l~~aivDgtaph~~~P--~~pgav~eiinL~~  110 (367)
T PRK06851         72 SLDGVII--PELKIAILDGTAPHVVDP--KAPGAVEEIINLGD  110 (367)
T ss_pred             ceeeEEe--cCCCEEEEcCCCcCcCCC--CCCCcceEEEEHHH
Confidence            4788875  455677777779999999  56888898998876

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=95.38  E-value=0.016  Score=43.96  Aligned_cols=15  Identities=40%  Similarity=0.550  Sum_probs=13.5

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||+|||++.+++.
T Consensus        30 ~G~~G~GKT~ll~~~~   45 (185)
T PF13191_consen   30 TGESGSGKTSLLRALL   45 (185)
T ss_dssp             -B-TTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999987

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=95.38  E-value=0.019  Score=53.41  Aligned_cols=15  Identities=33%  Similarity=0.490  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| +|+||||+++.++
T Consensus       485 vG~sGsGKSTLlklL~  500 (686)
T TIGR03797       485 VGPSGSGKSTLLRLLL  500 (686)
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            39 9999999999999

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=95.37  E-value=0.0095  Score=45.08  Aligned_cols=15  Identities=33%  Similarity=0.470  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|+.++
T Consensus         5 ~G~~GsGKSTla~~L~   20 (149)
T cd02027           5 TGLSGSGKSTIARALE   20 (149)
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            39 9999999999999

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=95.37  E-value=0.009  Score=48.71  Aligned_cols=15  Identities=40%  Similarity=0.561  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| ||+|||++|++++
T Consensus         5 ~G~pGSGKST~a~~La   20 (249)
T TIGR03574         5 TGLPGVGKSTFSKELA   20 (249)
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            39 9999999999999

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=95.35  E-value=0.033  Score=48.63  Aligned_cols=15  Identities=27%  Similarity=0.496  Sum_probs=14.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|||||++.++||
T Consensus        46 lGpsGsGKSTLLr~Ia   61 (375)
T PRK09452         46 LGPSGCGKTTVLRLIA   61 (375)
T ss_pred             ECCCCCcHHHHHHHHh
Confidence            49 9999999999999

>TIGR02688 conserved hypothetical protein TIGR02688

Probab=95.35  E-value=0.064  Score=47.93  Aligned_cols=55  Identities=16%  Similarity=0.201  Sum_probs=32.8

Q ss_pred             cc-CCCcHHHHHHHHH-c----cc----ccccccc----------CceeEeeechhhhccCCccchHHHHHHHHHhh
Q 036857           43 WG-PYTGKSSLIAAMA-D----LD----LKEFQSN----------SRSILVIEDAVTSFESNAYNSVALSALLKFVD   99 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~----~~----l~~v~~~----------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lD   99 (170)
                      .| ||||||.++.+++ .    .+    ...+..+          ...+|+|||+--+--  ......+..+...|.
T Consensus       215 lGp~GTGKThla~~l~~~~a~~sG~f~T~a~Lf~~L~~~~lg~v~~~DlLI~DEvgylp~--~~~~~~v~imK~yMe  289 (449)
T TIGR02688       215 LGPKGTGKSYIYNNLSPYVILISGGTITVAKLFYNISTRQIGLVGRWDVVAFDEVATLKF--AKPKELIGILKNYME  289 (449)
T ss_pred             ECCCCCCHHHHHHHHhHHHHHHcCCcCcHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcC--CchHHHHHHHHHHHH
Confidence            49 9999999999987 1    11    1111111          188999999976432  122334455555554

Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.

>PHA00012 I assembly protein

Probab=95.33  E-value=0.021  Score=49.42  Aligned_cols=55  Identities=15%  Similarity=0.207  Sum_probs=39.0

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPL  126 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~All  126 (170)
                      .+|+++||+-..++.+...+.....+++.+--.   ...+.-+|++|-++..+|..+.
T Consensus        82 gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~h---Rh~G~DvilITQ~ps~VDs~IR  136 (361)
T PHA00012         82 NGLLVLDECGTWFNSRSWNDKERQPVIDWFLHA---RKLGWDIIFIIQDISIMDKQAR  136 (361)
T ss_pred             CcEEEEECcccccCCCCcCcCCcHHHHHHHHHh---ccCCceEEEEcCCHHHHhHHHH
Confidence            679999999999986665543333344433332   2457888999999999999874

>PRK13949 shikimate kinase; Provisional

Probab=95.30  E-value=0.012  Score=45.66  Aligned_cols=20  Identities=40%  Similarity=0.478  Sum_probs=16.5

Q ss_pred             cc-CCCcHHHHHHHHH-ccccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDLK   62 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l~   62 (170)
                      .| ||+|||++++.+| .+++.
T Consensus         7 iG~~GsGKstl~~~La~~l~~~   28 (169)
T PRK13949          7 VGYMGAGKTTLGKALARELGLS   28 (169)
T ss_pred             ECCCCCCHHHHHHHHHHHcCCC
Confidence            49 9999999999999 44443

>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA

Probab=95.25  E-value=0.036  Score=52.56  Aligned_cols=30  Identities=23%  Similarity=0.179  Sum_probs=23.3

Q ss_pred             ccCChhhHHHhhcCc--------cc-CCCcHHHHHHHHH
Q 036857           28 IATDFDMNKALVDDY--------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        28 v~~~~~~k~~l~~~~--------~G-PGtGKT~la~aiA   57 (170)
                      ..+.+++++.+...+        -| ||||||++++++.
T Consensus       351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~  389 (744)
T TIGR02768       351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAR  389 (744)
T ss_pred             CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHH
Confidence            457788887765433        49 9999999999987

This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=95.24  E-value=0.019  Score=53.44  Aligned_cols=54  Identities=15%  Similarity=0.273  Sum_probs=31.0

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLS  138 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~  138 (170)
                      |.|+++||.-+-+.     ..+-..+.+.+....    .+..+|+.|.+++.     ++  ..|..+.+.
T Consensus       620 p~iliLDE~Ts~LD-----~~te~~i~~~l~~~~----~~~T~iiItHrl~~-----~~--~~D~iivl~  673 (694)
T TIGR03375       620 PPILLLDEPTSAMD-----NRSEERFKDRLKRWL----AGKTLVLVTHRTSL-----LD--LVDRIIVMD  673 (694)
T ss_pred             CCEEEEeCCCCCCC-----HHHHHHHHHHHHHHh----CCCEEEEEecCHHH-----HH--hCCEEEEEe
Confidence            99999999854433     223334444444442    24556666676653     33  567666664

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=95.22  E-value=0.011  Score=44.40  Aligned_cols=19  Identities=32%  Similarity=0.497  Sum_probs=15.9

Q ss_pred             cc-CCCcHHHHHHHHH-cccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDL   61 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l   61 (170)
                      .| ||+|||++|+.|| ..++
T Consensus         2 ~G~PgsGK~t~~~~la~~~~~   22 (151)
T PF00406_consen    2 LGPPGSGKGTQAKRLAKRYGL   22 (151)
T ss_dssp             EESTTSSHHHHHHHHHHHHTS
T ss_pred             cCCCCCChHHHHHHHHHhcCc
Confidence            49 9999999999999 3343

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=95.19  E-value=0.011  Score=45.57  Aligned_cols=15  Identities=33%  Similarity=0.554  Sum_probs=14.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|+.||
T Consensus         5 ~G~pGsGKst~a~~La   20 (194)
T cd01428           5 LGPPGSGKGTQAERLA   20 (194)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999999

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=95.18  E-value=0.042  Score=47.56  Aligned_cols=15  Identities=27%  Similarity=0.477  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|||||++.|.||
T Consensus        38 lGpsGsGKSTLLr~Ia   53 (351)
T PRK11432         38 LGPSGCGKTTVLRLVA   53 (351)
T ss_pred             ECCCCCcHHHHHHHHH
Confidence            39 9999999999999

>PRK00889 adenylylsulfate kinase; Provisional

Probab=95.16  E-value=0.012  Score=45.18  Aligned_cols=14  Identities=36%  Similarity=0.605  Sum_probs=13.8

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||+|||++|+++|
T Consensus        11 G~~GsGKST~a~~la   25 (175)
T PRK00889         11 GLSGAGKTTIARALA   25 (175)
T ss_pred             CCCCCCHHHHHHHHH
Confidence            9 9999999999999

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=95.15  E-value=0.043  Score=47.48  Aligned_cols=15  Identities=33%  Similarity=0.554  Sum_probs=14.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++.+.||
T Consensus        36 ~GpsGsGKSTLLr~ia   51 (353)
T TIGR03265        36 LGPSGCGKTTLLRIIA   51 (353)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK14530 adenylate kinase; Provisional

Probab=95.14  E-value=0.012  Score=46.95  Aligned_cols=19  Identities=26%  Similarity=0.545  Sum_probs=16.0

Q ss_pred             cc-CCCcHHHHHHHHH-cccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDL   61 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l   61 (170)
                      .| ||+|||++|+.+| ..++
T Consensus         9 ~G~pGsGKsT~~~~La~~~~~   29 (215)
T PRK14530          9 LGAPGAGKGTQSSNLAEEFGV   29 (215)
T ss_pred             ECCCCCCHHHHHHHHHHHhCC
Confidence            49 9999999999999 3443

>PRK05541 adenylylsulfate kinase; Provisional

Probab=95.14  E-value=0.012  Score=45.20  Aligned_cols=15  Identities=27%  Similarity=0.408  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|++++
T Consensus        13 ~G~~GsGKst~a~~l~   28 (176)
T PRK05541         13 TGLAGSGKTTIAKALY   28 (176)
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            39 9999999999998

>PRK13826 Dtr system oriT relaxase; Provisional

Probab=95.11  E-value=0.05  Score=53.60  Aligned_cols=30  Identities=17%  Similarity=0.160  Sum_probs=23.9

Q ss_pred             ccCChhhHHHhhcCc--------cc-CCCcHHHHHHHHH
Q 036857           28 IATDFDMNKALVDDY--------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        28 v~~~~~~k~~l~~~~--------~G-PGtGKT~la~aiA   57 (170)
                      ..+.+++++.+....        .| ||||||++.+++.
T Consensus       380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~  418 (1102)
T PRK13826        380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAR  418 (1102)
T ss_pred             CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHH
Confidence            457888888766433        49 9999999999987

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.10  E-value=0.31  Score=46.26  Aligned_cols=40  Identities=20%  Similarity=0.193  Sum_probs=30.2

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc-------cc-CCCcHHHHHHHHH
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY-------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~-------~G-PGtGKT~la~aiA   57 (170)
                      .+.+|..-..++--+.+.+.+....       .| +|.|||+++...+
T Consensus         6 k~~~p~~~~~~~~R~rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~   53 (903)
T PRK04841          6 KLSRPVRLHNTVVRERLLAKLSGANNYRLVLVTSPAGYGKTTLISQWA   53 (903)
T ss_pred             ccCCCCCccccCcchHHHHHHhcccCCCeEEEECCCCCCHHHHHHHHH
Confidence            3556776777787788777775432       59 9999999999876

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=95.09  E-value=0.06  Score=41.91  Aligned_cols=15  Identities=33%  Similarity=0.461  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|..+|
T Consensus         5 ~G~~~sGKS~~a~~~~   20 (169)
T cd00544           5 TGGARSGKSRFAERLA   20 (169)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999998

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=95.09  E-value=0.012  Score=48.87  Aligned_cols=15  Identities=40%  Similarity=0.545  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|+.++
T Consensus         8 ~G~pGSGKSTla~~L~   23 (300)
T PHA02530          8 VGVPGSGKSTWAREFA   23 (300)
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            49 9999999999999

>PRK02496 adk adenylate kinase; Provisional

Probab=95.08  E-value=0.013  Score=45.38  Aligned_cols=15  Identities=33%  Similarity=0.552  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|+.+|
T Consensus         7 ~G~pGsGKst~a~~la   22 (184)
T PRK02496          7 LGPPGAGKGTQAVVLA   22 (184)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999999

>PRK09519 recA DNA recombination protein RecA; Reviewed

Probab=95.07  E-value=0.042  Score=52.39  Aligned_cols=47  Identities=15%  Similarity=0.250  Sum_probs=29.0

Q ss_pred             ceeEeeechhhhccC-----C-c-----cchHHHHHHHHHhhchhccCCCCeEEEEeCCCC
Q 036857           69 RSILVIEDAVTSFES-----N-A-----YNSVALSALLKFVDGLWSSSGDGRILVMTTDYK  118 (170)
Q Consensus        69 p~il~iDEiD~~~~~-----~-~-----~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~  118 (170)
                      +.+|++|-+-.++..     + +     ...+.++++|..|.....  ..++.+|+| |..
T Consensus       139 ~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~--~~nvtvi~T-NQv  196 (790)
T PRK09519        139 LDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALN--NSGTTAIFI-NQL  196 (790)
T ss_pred             CeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHH--hCCCEEEEE-ecc
Confidence            889999999988851     0 1     113344566666666644  356777766 533

>PRK13946 shikimate kinase; Provisional

Probab=95.05  E-value=0.015  Score=45.31  Aligned_cols=22  Identities=32%  Similarity=0.238  Sum_probs=17.4

Q ss_pred             cc-CCCcHHHHHHHHH-ccccccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDLKEF   64 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l~~v   64 (170)
                      .| ||+|||++++.+| .+++.-+
T Consensus        16 ~G~~GsGKsti~~~LA~~Lg~~~i   39 (184)
T PRK13946         16 VGLMGAGKSTVGRRLATMLGLPFL   39 (184)
T ss_pred             ECCCCCCHHHHHHHHHHHcCCCeE
Confidence            49 9999999999999 4444433

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=95.04  E-value=0.013  Score=46.00  Aligned_cols=23  Identities=39%  Similarity=0.616  Sum_probs=18.3

Q ss_pred             cc-CCCcHHHHHHHHH-cccccccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDLKEFQ   65 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l~~v~   65 (170)
                      .| ||+||||+|+.|| .+++.++.
T Consensus         6 lG~pGaGK~T~A~~La~~~~i~hls   30 (178)
T COG0563           6 LGPPGAGKSTLAKKLAKKLGLPHLD   30 (178)
T ss_pred             ECCCCCCHHHHHHHHHHHhCCcEEc
Confidence            49 9999999999999 55554443

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.04  E-value=0.043  Score=45.05  Aligned_cols=15  Identities=33%  Similarity=0.503  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++++.++
T Consensus        36 ~G~nGsGKSTL~~~l~   51 (235)
T COG1122          36 IGPNGSGKSTLLKLLN   51 (235)
T ss_pred             ECCCCCCHHHHHHHHc
Confidence            49 9999999999999

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=95.03  E-value=0.052  Score=41.99  Aligned_cols=21  Identities=38%  Similarity=0.428  Sum_probs=16.8

Q ss_pred             c-CCCcHHHHHHHHH-ccccccc
Q 036857           44 G-PYTGKSSLIAAMA-DLDLKEF   64 (170)
Q Consensus        44 G-PGtGKT~la~aiA-~~~l~~v   64 (170)
                      | .|||||++++++| .++..-+
T Consensus         2 GVsG~GKStvg~~lA~~lg~~fi   24 (161)
T COG3265           2 GVSGSGKSTVGSALAERLGAKFI   24 (161)
T ss_pred             CCCccCHHHHHHHHHHHcCCcee
Confidence            8 9999999999999 4554333

>PRK06547 hypothetical protein; Provisional

Probab=95.03  E-value=0.014  Score=45.57  Aligned_cols=15  Identities=40%  Similarity=0.521  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|+.+|
T Consensus        21 ~G~~GsGKTt~a~~l~   36 (172)
T PRK06547         21 DGRSGSGKTTLAGALA   36 (172)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>PRK14531 adenylate kinase; Provisional

Probab=95.03  E-value=0.014  Score=45.49  Aligned_cols=15  Identities=33%  Similarity=0.545  Sum_probs=14.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.+|
T Consensus         8 ~G~pGsGKsT~~~~la   23 (183)
T PRK14531          8 LGPPGAGKGTQAARLC   23 (183)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999999

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=95.02  E-value=0.043  Score=43.87  Aligned_cols=15  Identities=33%  Similarity=0.536  Sum_probs=13.9

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+|||++.+.++
T Consensus        35 ~G~n~~GKstll~~i~   50 (204)
T cd03282          35 TGPNMSGKSTYLKQIA   50 (204)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999998

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.01  E-value=0.025  Score=51.71  Aligned_cols=38  Identities=11%  Similarity=0.228  Sum_probs=28.5

Q ss_pred             CCCCCcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH
Q 036857           20 EHPATSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        20 ~~p~~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA   57 (170)
                      .....|++|...-+-|+.++.-+            -| +|+|||++.|++-
T Consensus       349 ~~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~Ll  399 (591)
T KOG0057|consen  349 GGSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLL  399 (591)
T ss_pred             CCcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHH
Confidence            33446788877666666566555            39 9999999999998

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=95.01  E-value=0.014  Score=46.34  Aligned_cols=14  Identities=29%  Similarity=0.567  Sum_probs=13.7

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||+|||++|+.++
T Consensus         6 G~sgsGKTtla~~l~   20 (187)
T cd02024           6 GVTNSGKTTLAKLLQ   20 (187)
T ss_pred             CCCCCCHHHHHHHHH
Confidence            8 9999999999999

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51

Probab=94.97  E-value=0.034  Score=46.05  Aligned_cols=53  Identities=19%  Similarity=0.257  Sum_probs=31.6

Q ss_pred             ceeEeeechhhhcc----CCc---cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCC
Q 036857           69 RSILVIEDAVTSFE----SNA---YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDP  123 (170)
Q Consensus        69 p~il~iDEiD~~~~----~~~---~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~  123 (170)
                      -.+|++|-+-.++.    .++   .....+..++..|-.+..  ..++.|++|..-....|.
T Consensus       134 ikLIVIDSIaalfr~e~~~~~~~~~R~~~L~~~~~~L~~lA~--~~~iaVvvTNqv~~~~~~  193 (256)
T PF08423_consen  134 IKLIVIDSIAALFRSEFSGRGDLAERQRMLARLARILKRLAR--KYNIAVVVTNQVTTKIDS  193 (256)
T ss_dssp             EEEEEEETSSHHHHHHSGSTTTHHHHHHHHHHHHHHHHHHHH--HTT-EEEEEEEECSSTT-
T ss_pred             eEEEEecchHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHH--hCCceEEeeceeeecCCc
Confidence            67999999988875    111   223566777777877776  356666665443334443

It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=94.94  E-value=0.032  Score=50.91  Aligned_cols=15  Identities=33%  Similarity=0.572  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+|||++++.++
T Consensus       347 vG~sGsGKSTLl~ll~  362 (569)
T PRK10789        347 CGPTGSGKSTLLSLIQ  362 (569)
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            39 9999999999999

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=94.94  E-value=0.015  Score=45.54  Aligned_cols=14  Identities=21%  Similarity=0.477  Sum_probs=13.7

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||+|||+++++++
T Consensus         6 G~~GsGKSTl~~~l~   20 (198)
T cd02023           6 GGSGSGKTTVAEEII   20 (198)
T ss_pred             CCCCCCHHHHHHHHH
Confidence            8 9999999999998

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=94.91  E-value=0.03  Score=52.29  Aligned_cols=15  Identities=33%  Similarity=0.441  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+||||+++.++
T Consensus       511 vG~sGsGKSTLlklL~  526 (710)
T TIGR03796       511 VGGSGSGKSTIAKLVA  526 (710)
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            39 9999999999999

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=94.91  E-value=0.03  Score=50.72  Aligned_cols=15  Identities=33%  Similarity=0.530  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| .|+|||++++.++
T Consensus       364 vG~sGsGKSTLl~lL~  379 (571)
T TIGR02203       364 VGRSGSGKSTLVNLIP  379 (571)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999998

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=94.91  E-value=0.015  Score=45.92  Aligned_cols=15  Identities=20%  Similarity=0.372  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| ||+|||+++++|+
T Consensus        12 ~G~sGsGKTTl~~~l~   27 (209)
T PRK05480         12 AGGSGSGKTTVASTIY   27 (209)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999999

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=94.89  E-value=0.034  Score=51.97  Aligned_cols=15  Identities=33%  Similarity=0.443  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| +|+|||++++.++
T Consensus       506 vG~SGsGKSTLlklL~  521 (708)
T TIGR01193       506 VGMSGSGKSTLAKLLV  521 (708)
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            39 9999999999999

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=94.88  E-value=0.016  Score=44.51  Aligned_cols=15  Identities=27%  Similarity=0.353  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| ||+|||+++++|+
T Consensus         7 ~G~sGsGKttl~~~l~   22 (179)
T TIGR02322         7 VGPSGAGKDTLLDYAR   22 (179)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999998

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=94.87  E-value=0.026  Score=48.66  Aligned_cols=14  Identities=43%  Similarity=0.769  Sum_probs=12.9

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||||||.+|-.+|
T Consensus        73 G~pgtGKtAiAmg~s   87 (454)
T KOG2680|consen   73 GQPGTGKTAIAMGMS   87 (454)
T ss_pred             cCCCCCceeeeeehh
Confidence            9 9999999888887

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=94.87  E-value=0.037  Score=43.66  Aligned_cols=15  Identities=27%  Similarity=0.461  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| -|+|||++.++|+
T Consensus        35 ~G~Ng~GKStll~~i~   50 (202)
T cd03243          35 TGPNMGGKSTYLRSIG   50 (202)
T ss_pred             ECCCCCccHHHHHHHH
Confidence            49 9999999999999

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PRK04182 cytidylate kinase; Provisional

Probab=94.87  E-value=0.016  Score=44.00  Aligned_cols=19  Identities=37%  Similarity=0.600  Sum_probs=16.0

Q ss_pred             cc-CCCcHHHHHHHHH-cccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDL   61 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l   61 (170)
                      -| ||+|||++++.+| .+++
T Consensus         6 ~G~~GsGKstia~~la~~lg~   26 (180)
T PRK04182          6 SGPPGSGKTTVARLLAEKLGL   26 (180)
T ss_pred             ECCCCCCHHHHHHHHHHHcCC
Confidence            39 9999999999999 4444

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=94.86  E-value=0.015  Score=45.57  Aligned_cols=14  Identities=36%  Similarity=0.589  Sum_probs=13.7

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||+|||++|++|+
T Consensus         6 G~sgSGKTTla~~L~   20 (194)
T PF00485_consen    6 GPSGSGKTTLAKRLA   20 (194)
T ss_dssp             ESTTSSHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHH
Confidence            8 9999999999998

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=94.85  E-value=0.021  Score=51.42  Aligned_cols=52  Identities=15%  Similarity=0.070  Sum_probs=35.0

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLR  127 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllR  127 (170)
                      +-++++||+|.++...   +.    .|-.++..........++|+-.|..+.=|..|.|
T Consensus       257 ~~llVlDEmD~L~tr~---~~----vLy~lFewp~lp~sr~iLiGiANslDlTdR~Lpr  308 (529)
T KOG2227|consen  257 MLLLVLDEMDHLITRS---QT----VLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPR  308 (529)
T ss_pred             eEEEEechhhHHhhcc---cc----eeeeehhcccCCcceeeeeeehhhhhHHHHHhhh
Confidence            7899999999997521   11    2222333333334678899999999988888863

>TIGR02533 type_II_gspE general secretory pathway protein E

Probab=94.84  E-value=0.068  Score=48.31  Aligned_cols=37  Identities=14%  Similarity=0.065  Sum_probs=29.7

Q ss_pred             CCCCcccccCChhhHHHhhcCc---------cc-CCCcHHHHHHHHH
Q 036857           21 HPATSNTIATDFDMNKALVDDY---------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        21 ~p~~~~~v~~~~~~k~~l~~~~---------~G-PGtGKT~la~aiA   57 (170)
                      .+.+++++.+.+++.+.+...+         -| +|+|||++.+++.
T Consensus       217 ~~~~l~~Lg~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L  263 (486)
T TIGR02533       217 VRLDLETLGMSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAAL  263 (486)
T ss_pred             CCCCHHHcCCCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHH
Confidence            3558999999998887765544         49 9999999999766

This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=94.84  E-value=0.018  Score=49.02  Aligned_cols=15  Identities=47%  Similarity=0.744  Sum_probs=14.7

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      || +|.|||++.+.||
T Consensus        30 FG~SGsGKTslin~Ia   45 (352)
T COG4148          30 FGPSGSGKTSLINMIA   45 (352)
T ss_pred             ecCCCCChhhHHHHHh
Confidence            79 9999999999999

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=94.81  E-value=0.017  Score=44.02  Aligned_cols=15  Identities=33%  Similarity=0.348  Sum_probs=14.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.+|
T Consensus         8 ~G~~GsGKst~~~~la   23 (171)
T PRK03731          8 VGARGCGKTTVGMALA   23 (171)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=94.77  E-value=0.049  Score=47.02  Aligned_cols=46  Identities=13%  Similarity=0.320  Sum_probs=26.9

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHI  121 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~l  121 (170)
                      |.++++||--+-+.     ..+...+++.+..+..  ..+.-+|++|...+.+
T Consensus       159 P~iLLlDEPts~LD-----~~t~~~i~~lL~~l~~--~~g~tiiliTH~~~~v  204 (343)
T TIGR02314       159 PKVLLCDEATSALD-----PATTQSILELLKEINR--RLGLTILLITHEMDVV  204 (343)
T ss_pred             CCEEEEeCCcccCC-----HHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHH
Confidence            99999999854433     2333444444444432  1256677777766544

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=94.77  E-value=0.071  Score=41.49  Aligned_cols=15  Identities=33%  Similarity=0.461  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|..++
T Consensus         7 ~G~~~sGKS~~a~~l~   22 (170)
T PRK05800          7 TGGARSGKSRFAERLA   22 (170)
T ss_pred             ECCCCccHHHHHHHHH
Confidence            49 9999999999999

>PRK06696 uridine kinase; Validated

Probab=94.76  E-value=0.017  Score=46.37  Aligned_cols=14  Identities=29%  Similarity=0.593  Sum_probs=13.8

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||+|||++|+.|+
T Consensus        29 G~sgsGKSTlA~~L~   43 (223)
T PRK06696         29 GITASGKTTFADELA   43 (223)
T ss_pred             CCCCCCHHHHHHHHH
Confidence            9 9999999999999

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=94.76  E-value=0.12  Score=42.99  Aligned_cols=53  Identities=19%  Similarity=0.311  Sum_probs=37.8

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLR  127 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllR  127 (170)
                      |-++++||-=.     +-.-.....+++.++.+... ....-+++-|.+.+.++|.+.+
T Consensus       190 P~LLiLDEP~~-----GLDl~~re~ll~~l~~~~~~-~~~~~ll~VtHh~eEi~~~~th  242 (257)
T COG1119         190 PELLILDEPAQ-----GLDLIAREQLLNRLEELAAS-PGAPALLFVTHHAEEIPPCFTH  242 (257)
T ss_pred             CCEEEecCccc-----cCChHHHHHHHHHHHHHhcC-CCCceEEEEEcchhhcccccce
Confidence            99999999721     22233455788888888764 3456677778999999998754

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=94.72  E-value=0.035  Score=50.86  Aligned_cols=54  Identities=17%  Similarity=0.302  Sum_probs=31.4

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLS  138 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~  138 (170)
                      |.|+++||.-+-+.     ..+-..+.+.+....    .+..+|+.|.+++.+.       .+|..+.+.
T Consensus       490 p~ililDEpts~LD-----~~~~~~i~~~l~~~~----~~~tvI~isH~~~~~~-------~~d~i~~l~  543 (585)
T TIGR01192       490 APILVLDEATSALD-----VETEARVKNAIDALR----KNRTTFIIAHRLSTVR-------NADLVLFLD  543 (585)
T ss_pred             CCEEEEECCccCCC-----HHHHHHHHHHHHHHh----CCCEEEEEEcChHHHH-------cCCEEEEEE
Confidence            89999999865443     223334444454442    2556777777765542       356666553

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=94.70  E-value=0.019  Score=44.86  Aligned_cols=14  Identities=21%  Similarity=0.515  Sum_probs=13.7

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||+|||++|+.++
T Consensus         6 G~sgsGKttla~~l~   20 (179)
T cd02028           6 GPSGSGKTTFAKKLS   20 (179)
T ss_pred             CCCCCCHHHHHHHHH
Confidence            8 9999999999999

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PHA02624 large T antigen; Provisional

Probab=94.68  E-value=0.026  Score=52.42  Aligned_cols=94  Identities=18%  Similarity=0.167  Sum_probs=56.8

Q ss_pred             cc-CCCcHHHHHHHHH----cccccccc---ccC---------ceeEeeechhhhccCC-----ccchHHHHHHHHHhhc
Q 036857           43 WG-PYTGKSSLIAAMA----DLDLKEFQ---SNS---------RSILVIEDAVTSFESN-----AYNSVALSALLKFVDG  100 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA----~~~l~~v~---~~~---------p~il~iDEiD~~~~~~-----~~~~~~~~~ll~~lDg  100 (170)
                      || ||||||+++.+|+    +..++ |.   +..         ..+.+|||+-.-+...     +..-.-+.-|-+.|||
T Consensus       437 ~GPpnTGKTtf~~sLl~~L~G~vls-VNsPt~ks~FwL~pl~D~~~~l~dD~t~~~~~~~~Lp~G~~~dNl~~lRn~LDG  515 (647)
T PHA02624        437 KGPVNSGKTTLAAALLDLCGGKSLN-VNCPPDKLNFELGCAIDQFMVVFEDVKGQPADNKDLPSGQGMNNLDNLRDYLDG  515 (647)
T ss_pred             ECCCCCCHHHHHHHHHHHcCCeEEE-eeCCcchhHHHhhhhhhceEEEeeeccccccccccCCcccccchhhHHHhhcCC
Confidence            79 9999999999999    22233 32   111         6789999995433311     1111123456678888


Q ss_pred             hhc-----cCCCC-----eEEEEeCCCCCCCCCCCCCCCccceEEEcCCC
Q 036857          101 LWS-----SSGDG-----RILVMTTDYKDHIDPVPLRPSCMDMHFHLSSH  140 (170)
Q Consensus       101 ~~~-----~~~~~-----~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p  140 (170)
                      -..     .+.+.     --.|+|||. ..||.-+.=  ||-..+.|..-
T Consensus       516 ~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~k  562 (647)
T PHA02624        516 SVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKPK  562 (647)
T ss_pred             CCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhcccccc
Confidence            711     00111     136788885 356666663  89999998753

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=94.65  E-value=0.019  Score=44.90  Aligned_cols=14  Identities=21%  Similarity=0.294  Sum_probs=13.5

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      + +|||||+++.|++
T Consensus         6 AtiGCGKTTva~aL~   20 (168)
T PF08303_consen    6 ATIGCGKTTVALALS   20 (168)
T ss_pred             cCCCcCHHHHHHHHH
Confidence            6 9999999999999

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=94.62  E-value=0.02  Score=45.69  Aligned_cols=19  Identities=32%  Similarity=0.433  Sum_probs=15.8

Q ss_pred             cc-CCCcHHHHHHHHH-cccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDL   61 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l   61 (170)
                      .| ||+|||++|+.+| .+++
T Consensus         9 ~G~~G~GKst~a~~l~~~~~~   29 (197)
T PRK12339          9 GGIPGVGKTSISGYIARHRAI   29 (197)
T ss_pred             ECCCCCCHHHHHHHHHHhcCC
Confidence            49 9999999999999 4443

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=94.59  E-value=0.023  Score=40.23  Aligned_cols=15  Identities=40%  Similarity=0.576  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++.+.++
T Consensus         5 ~G~~g~GKTsLi~~l~   20 (119)
T PF08477_consen    5 LGDSGVGKTSLIRRLC   20 (119)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHh
Confidence            49 9999999999999

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK13975 thymidylate kinase; Provisional

Probab=94.57  E-value=0.021  Score=44.35  Aligned_cols=14  Identities=29%  Similarity=0.415  Sum_probs=13.8

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | +|+|||++++.+|
T Consensus         9 G~~GsGKtT~~~~L~   23 (196)
T PRK13975          9 GIDGSGKTTQAKLLA   23 (196)
T ss_pred             CCCCCCHHHHHHHHH
Confidence            9 9999999999999

>TIGR00235 udk uridine kinase

Probab=94.52  E-value=0.022  Score=45.17  Aligned_cols=15  Identities=20%  Similarity=0.304  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||+++++++
T Consensus        12 ~G~sGsGKSTl~~~l~   27 (207)
T TIGR00235        12 GGGSGSGKTTVARKIY   27 (207)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999998

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK10536 hypothetical protein; Provisional

Probab=94.50  E-value=0.021  Score=47.70  Aligned_cols=15  Identities=40%  Similarity=0.306  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|||||++|.++|
T Consensus        80 ~G~aGTGKT~La~a~a   95 (262)
T PRK10536         80 TGEAGCGKTWISAAKA   95 (262)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999998

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=94.49  E-value=0.068  Score=45.97  Aligned_cols=38  Identities=18%  Similarity=0.121  Sum_probs=27.0

Q ss_pred             CCCCCcccccCChhhHHHhhcCc-----cc-CCCcHHHHHHHHH
Q 036857           20 EHPATSNTIATDFDMNKALVDDY-----WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        20 ~~p~~~~~v~~~~~~k~~l~~~~-----~G-PGtGKT~la~aiA   57 (170)
                      ..+.+++++..++...+.+...-     .| +|+|||++.+++.
T Consensus       100 ~~~~~l~~lg~~~~l~~~~~~~~g~ili~G~tGSGKTT~l~al~  143 (343)
T TIGR01420       100 SKIPTFEELGLPPVLRELAERPRGLILVTGPTGSGKSTTLASMI  143 (343)
T ss_pred             CCCCCHHHcCCCHHHHHHHhhcCcEEEEECCCCCCHHHHHHHHH
Confidence            34557888888775555432211     49 9999999999988

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=94.49  E-value=0.051  Score=49.68  Aligned_cols=54  Identities=9%  Similarity=0.222  Sum_probs=30.6

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLS  138 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~  138 (170)
                      |.|+++||.-+-+.     ..+-..+.+.+....    .+..+|+.|.+++.+     +  ..|..+.+.
T Consensus       494 ~~ililDE~ts~lD-----~~t~~~i~~~l~~~~----~~~tviiitHr~~~~-----~--~~d~i~~l~  547 (574)
T PRK11160        494 APLLLLDEPTEGLD-----AETERQILELLAEHA----QNKTVLMITHRLTGL-----E--QFDRICVMD  547 (574)
T ss_pred             CCEEEEeCCcccCC-----HHHHHHHHHHHHHHc----CCCEEEEEecChhHH-----H--hCCEEEEEe
Confidence            99999999855443     223344555555543    245566666665543     2  356666554

>PRK13948 shikimate kinase; Provisional

Probab=94.48  E-value=0.026  Score=44.52  Aligned_cols=19  Identities=37%  Similarity=0.251  Sum_probs=15.9

Q ss_pred             cc-CCCcHHHHHHHHH-cccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDL   61 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l   61 (170)
                      -| ||+|||++++.+| .++.
T Consensus        16 iG~~GsGKSTvg~~La~~lg~   36 (182)
T PRK13948         16 AGFMGTGKSRIGWELSRALML   36 (182)
T ss_pred             ECCCCCCHHHHHHHHHHHcCC
Confidence            39 9999999999999 4443

>PRK14527 adenylate kinase; Provisional

Probab=94.47  E-value=0.023  Score=44.42  Aligned_cols=15  Identities=33%  Similarity=0.534  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|+.+|
T Consensus        12 ~G~pGsGKsT~a~~La   27 (191)
T PRK14527         12 LGPPGAGKGTQAERLA   27 (191)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999999

>PLN02200 adenylate kinase family protein

Probab=94.47  E-value=0.022  Score=46.49  Aligned_cols=20  Identities=25%  Similarity=0.493  Sum_probs=16.4

Q ss_pred             cc-CCCcHHHHHHHHH-ccccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDLK   62 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l~   62 (170)
                      .| ||+|||++|+.+| ..++.
T Consensus        49 ~G~PGSGKsT~a~~La~~~g~~   70 (234)
T PLN02200         49 LGGPGSGKGTQCEKIVETFGFK   70 (234)
T ss_pred             ECCCCCCHHHHHHHHHHHhCCe
Confidence            59 9999999999999 34443

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=94.44  E-value=0.11  Score=41.39  Aligned_cols=15  Identities=27%  Similarity=0.273  Sum_probs=13.7

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||.++..++
T Consensus        22 ~G~~G~GKt~~~~~~~   37 (224)
T TIGR03880        22 IGEYGTGKTTFSLQFL   37 (224)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999888

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=94.44  E-value=0.062  Score=49.26  Aligned_cols=15  Identities=33%  Similarity=0.477  Sum_probs=14.5

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| +|+|||++...++
T Consensus       353 vG~SGaGKSTLl~lL~  368 (559)
T COG4988         353 VGASGAGKSTLLNLLL  368 (559)
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            69 9999999999999

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=94.44  E-value=0.066  Score=43.29  Aligned_cols=48  Identities=8%  Similarity=0.235  Sum_probs=27.0

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPV  124 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~A  124 (170)
                      |.+++-||=-     +.-....-.++++.+..+..   .+.-|++||...+.++..
T Consensus       156 P~vLlADEPT-----GNLDp~~s~~im~lfeeinr---~GtTVl~ATHd~~lv~~~  203 (223)
T COG2884         156 PAVLLADEPT-----GNLDPDLSWEIMRLFEEINR---LGTTVLMATHDLELVNRM  203 (223)
T ss_pred             CCeEeecCCC-----CCCChHHHHHHHHHHHHHhh---cCcEEEEEeccHHHHHhc
Confidence            8888888751     12222333444555555543   366777777766655543

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=94.40  E-value=0.14  Score=42.35  Aligned_cols=15  Identities=33%  Similarity=0.426  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| =|+|||||+.+|+
T Consensus        36 MGPNGsGKSTLa~~i~   51 (251)
T COG0396          36 MGPNGSGKSTLAYTIM   51 (251)
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            59 8999999999999

>PTZ00088 adenylate kinase 1; Provisional

Probab=94.39  E-value=0.026  Score=46.12  Aligned_cols=21  Identities=29%  Similarity=0.593  Sum_probs=16.8

Q ss_pred             cc-CCCcHHHHHHHHH-cccccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDLKE   63 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l~~   63 (170)
                      .| ||+|||++|+.+| ..++..
T Consensus        12 ~G~PGsGK~T~a~~La~~~g~~~   34 (229)
T PTZ00088         12 FGAPGVGKGTFAEILSKKENLKH   34 (229)
T ss_pred             ECCCCCCHHHHHHHHHHHhCCcE
Confidence            69 9999999999999 334433

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=94.38  E-value=0.025  Score=44.49  Aligned_cols=22  Identities=36%  Similarity=0.368  Sum_probs=17.3

Q ss_pred             cc-CCCcHHHHHHHHH-ccccccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDLKEF   64 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l~~v   64 (170)
                      -| +|+|||++.|++| .+++.-+
T Consensus         8 iG~mGaGKSTIGr~LAk~L~~~F~   31 (172)
T COG0703           8 IGFMGAGKSTIGRALAKALNLPFI   31 (172)
T ss_pred             EcCCCCCHhHHHHHHHHHcCCCcc
Confidence            39 9999999999999 4444333

>PRK14528 adenylate kinase; Provisional

Probab=94.36  E-value=0.025  Score=44.33  Aligned_cols=15  Identities=27%  Similarity=0.472  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|+.+|
T Consensus         7 ~G~pGsGKtt~a~~la   22 (186)
T PRK14528          7 MGPPGAGKGTQAKILC   22 (186)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999999

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=94.36  E-value=0.026  Score=42.53  Aligned_cols=34  Identities=18%  Similarity=0.353  Sum_probs=22.3

Q ss_pred             cc-CCCcHHHHHHHHH-ccccccccccCceeEeeech
Q 036857           43 WG-PYTGKSSLIAAMA-DLDLKEFQSNSRSILVIEDA   77 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l~~v~~~~p~il~iDEi   77 (170)
                      .| .|+|||+++|+++ .++... ..++|..-++.+-
T Consensus        28 ~G~lGaGKTtl~~~l~~~lg~~~-~v~SPTf~lv~~Y   63 (133)
T TIGR00150        28 KGDLGAGKTTLVQGLLQGLGIQG-NVTSPTFTLVNEY   63 (133)
T ss_pred             EcCCCCCHHHHHHHHHHHcCCCC-cccCCCeeeeeec
Confidence            59 9999999999999 444321 2233555555544

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain

Probab=94.35  E-value=0.12  Score=43.43  Aligned_cols=15  Identities=27%  Similarity=0.481  Sum_probs=13.9

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| .|+|||++.+.+.
T Consensus        82 ~G~g~nGKStl~~~l~   97 (304)
T TIGR01613        82 YGNGGNGKSTFQNLLS   97 (304)
T ss_pred             ECCCCCcHHHHHHHHH
Confidence            59 9999999999887

This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=94.33  E-value=0.047  Score=49.50  Aligned_cols=15  Identities=33%  Similarity=0.439  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| +|+|||++++.++
T Consensus       372 vG~sGsGKSTLlklL~  387 (576)
T TIGR02204       372 VGPSGAGKSTLFQLLL  387 (576)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999999

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>TIGR00376 DNA helicase, putative

Probab=94.33  E-value=0.03  Score=52.19  Aligned_cols=30  Identities=20%  Similarity=0.231  Sum_probs=22.8

Q ss_pred             ccCChhhHHHhhcCc--------cc-CCCcHHHHHHHHH
Q 036857           28 IATDFDMNKALVDDY--------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        28 v~~~~~~k~~l~~~~--------~G-PGtGKT~la~aiA   57 (170)
                      -.+++.+++.+...+        +| ||||||+++.+++
T Consensus       156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii  194 (637)
T TIGR00376       156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELI  194 (637)
T ss_pred             CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHH
Confidence            456778777765433        79 9999999888776

The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.

>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP

Probab=94.33  E-value=0.14  Score=39.63  Aligned_cols=42  Identities=7%  Similarity=0.199  Sum_probs=24.5

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDY  117 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~  117 (170)
                      ..+|++||+-.....+   -.....+++.++.-    ++..=+|+|.+.
T Consensus        96 ~dLlVLDEi~~a~~~g---li~~~~v~~ll~~r----p~~~evIlTGr~  137 (159)
T cd00561          96 YDLVILDEINYALGYG---LLDVEEVVDLLKAK----PEDLELVLTGRN  137 (159)
T ss_pred             CCEEEEechHhHhhCC---CCCHHHHHHHHHcC----CCCCEEEEECCC
Confidence            7899999995544311   12234455555443    456667777753

This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.

>TIGR01351 adk adenylate kinases

Probab=94.29  E-value=0.026  Score=44.82  Aligned_cols=15  Identities=33%  Similarity=0.539  Sum_probs=14.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|+.+|
T Consensus         5 ~G~pGsGKsT~a~~La   20 (210)
T TIGR01351         5 LGPPGSGKGTQAKRIA   20 (210)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999999

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=94.26  E-value=0.027  Score=49.65  Aligned_cols=15  Identities=40%  Similarity=0.669  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|||||+|+++||
T Consensus       225 ~G~~gsGKTTL~~~La  240 (399)
T PRK08099        225 LGGESSGKSTLVNKLA  240 (399)
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            39 9999999999999

>PTZ00301 uridine kinase; Provisional

Probab=94.25  E-value=0.027  Score=45.44  Aligned_cols=14  Identities=43%  Similarity=0.567  Sum_probs=13.4

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||+|||++|+.|+
T Consensus        10 G~SgSGKTTla~~l~   24 (210)
T PTZ00301         10 GASGSGKSSLSTNIV   24 (210)
T ss_pred             CCCcCCHHHHHHHHH
Confidence            8 9999999999997

>TIGR00416 sms DNA repair protein RadA

Probab=94.24  E-value=0.11  Score=46.46  Aligned_cols=15  Identities=47%  Similarity=0.634  Sum_probs=13.8

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+++..+|
T Consensus       100 ~G~pGsGKTTL~lq~a  115 (454)
T TIGR00416       100 GGDPGIGKSTLLLQVA  115 (454)
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            49 9999999999988

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>PRK07667 uridine kinase; Provisional

Probab=94.23  E-value=0.028  Score=44.28  Aligned_cols=14  Identities=29%  Similarity=0.693  Sum_probs=13.6

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||+|||++|+.++
T Consensus        24 G~~gsGKStla~~L~   38 (193)
T PRK07667         24 GLSRSGKTTFVANLK   38 (193)
T ss_pred             CCCCCCHHHHHHHHH
Confidence            9 9999999999998

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=94.21  E-value=0.13  Score=41.81  Aligned_cols=15  Identities=47%  Similarity=0.496  Sum_probs=13.9

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| .|+|||++.+.++
T Consensus        37 tG~N~~GKStll~~i~   52 (222)
T cd03287          37 TGPNMGGKSSYIRQVA   52 (222)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999998

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=94.15  E-value=0.2  Score=45.17  Aligned_cols=15  Identities=27%  Similarity=0.257  Sum_probs=13.8

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||||||+++..++
T Consensus        37 ~G~pGsGKT~l~~qf~   52 (509)
T PRK09302         37 SGTAGTGKTLFALQFL   52 (509)
T ss_pred             EeCCCCCHHHHHHHHH
Confidence            59 9999999999887

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=94.14  E-value=0.1  Score=43.96  Aligned_cols=48  Identities=8%  Similarity=0.295  Sum_probs=30.1

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDP  123 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~  123 (170)
                      |.++|+||=-+=     -.......+.+.|..+..  ..+..|+++|..++.+..
T Consensus       155 P~lliLDEPt~G-----LDp~~~~~~~~~l~~l~~--~g~~tvlissH~l~e~~~  202 (293)
T COG1131         155 PELLILDEPTSG-----LDPESRREIWELLRELAK--EGGVTILLSTHILEEAEE  202 (293)
T ss_pred             CCEEEECCCCcC-----CCHHHHHHHHHHHHHHHh--CCCcEEEEeCCcHHHHHH
Confidence            999999997332     223344455555656654  234788889887775533

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=94.12  E-value=0.03  Score=43.64  Aligned_cols=15  Identities=47%  Similarity=0.663  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++++.++
T Consensus         8 ~G~sGsGKsTl~~~l~   23 (186)
T PRK10078          8 MGPSGSGKDSLLAALR   23 (186)
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            39 9999999999999

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=94.11  E-value=0.065  Score=48.53  Aligned_cols=15  Identities=33%  Similarity=0.450  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++++.++
T Consensus       350 vG~sGsGKSTL~~ll~  365 (544)
T TIGR01842       350 IGPSGSGKSTLARLIV  365 (544)
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999999

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=94.11  E-value=0.031  Score=42.16  Aligned_cols=19  Identities=37%  Similarity=0.618  Sum_probs=15.9

Q ss_pred             cc-CCCcHHHHHHHHH-cccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDL   61 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l   61 (170)
                      .| ||+|||++|+.+| .+++
T Consensus         6 ~G~~GSGKstia~~la~~lg~   26 (171)
T TIGR02173         6 SGPPGSGKTTVAKILAEKLSL   26 (171)
T ss_pred             ECCCCCCHHHHHHHHHHHcCC
Confidence            49 9999999999999 3444

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PRK00279 adk adenylate kinase; Reviewed

Probab=94.10  E-value=0.03  Score=44.61  Aligned_cols=15  Identities=33%  Similarity=0.481  Sum_probs=14.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||+|||++|+.+|
T Consensus         6 ~G~pGsGKsT~a~~la   21 (215)
T PRK00279          6 LGPPGAGKGTQAKFIA   21 (215)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999999

>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []

Probab=94.09  E-value=0.043  Score=44.34  Aligned_cols=47  Identities=11%  Similarity=0.208  Sum_probs=22.7

Q ss_pred             ceeEeeechhhhccCCccchH---HHHHHHHHhhchhccCCCCeEEEEeCC--CCCCCCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSV---ALSALLKFVDGLWSSSGDGRILVMTTD--YKDHIDPVP  125 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~---~~~~ll~~lDg~~~~~~~~~~vi~tTN--~~~~lD~Al  125 (170)
                      |.|+++||+=.--..++....   .+.++|+          .++=|+.|.|  |.+++.+.+
T Consensus        84 P~vvLVDELAHtN~pgsr~~kR~qDVeeLL~----------aGIdV~TTlNvqHlESlnd~V  135 (211)
T PF02702_consen   84 PQVVLVDELAHTNAPGSRHKKRYQDVEELLD----------AGIDVYTTLNVQHLESLNDVV  135 (211)
T ss_dssp             -SEEEES-TT-B--TT-SSSBHHHHHHHHHH----------TT-EEEEEEEGGGBGGGHHHH
T ss_pred             CCEEEeCcccccCCCCCCCcccHHhHHHHHH----------CCCeEEEeeeHHHhhhhHHHH
Confidence            999999998554432222222   2334443          2555677777  666655444

Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=94.03  E-value=0.031  Score=45.13  Aligned_cols=14  Identities=29%  Similarity=0.385  Sum_probs=13.6

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | +|+||||+|+.|+
T Consensus         6 G~sGSGKTTla~~L~   20 (220)
T cd02025           6 GSVAVGKSTTARVLQ   20 (220)
T ss_pred             CCCCCCHHHHHHHHH
Confidence            8 9999999999998

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK14526 adenylate kinase; Provisional

Probab=94.00  E-value=0.033  Score=44.89  Aligned_cols=15  Identities=27%  Similarity=0.609  Sum_probs=14.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||+|||++++.+|
T Consensus         6 ~G~pGsGKsT~a~~La   21 (211)
T PRK14526          6 LGPPGSGKGTIAKILS   21 (211)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999999

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=93.99  E-value=0.033  Score=43.41  Aligned_cols=15  Identities=33%  Similarity=0.386  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||+++++++
T Consensus         9 ~G~sGsGKSTl~~~la   24 (176)
T PRK09825          9 MGVSGSGKSLIGSKIA   24 (176)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=93.92  E-value=0.14  Score=42.70  Aligned_cols=15  Identities=33%  Similarity=0.525  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|||||++.|.|.
T Consensus        40 iGgSGsGKStlLr~I~   55 (263)
T COG1127          40 LGGSGSGKSTLLRLIL   55 (263)
T ss_pred             ECCCCcCHHHHHHHHh
Confidence            39 9999999999999

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=93.87  E-value=0.036  Score=44.27  Aligned_cols=15  Identities=33%  Similarity=0.744  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||+|||+++..+|
T Consensus        29 ~G~~GsGKT~l~~~la   44 (225)
T PRK09361         29 YGPPGSGKTNICLQLA   44 (225)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            69 9999999999999

>PRK03846 adenylylsulfate kinase; Provisional

Probab=93.86  E-value=0.036  Score=43.64  Aligned_cols=14  Identities=36%  Similarity=0.589  Sum_probs=13.7

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||+|||+++++++
T Consensus        31 G~~GsGKSTla~~l~   45 (198)
T PRK03846         31 GLSGSGKSTVAGALE   45 (198)
T ss_pred             CCCCCCHHHHHHHHH
Confidence            9 9999999999998

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=93.85  E-value=0.046  Score=46.96  Aligned_cols=15  Identities=40%  Similarity=0.594  Sum_probs=14.5

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| +|+|||++.|.||
T Consensus        34 lGpSGaGKsTlLRiIA   49 (345)
T COG1118          34 LGPSGAGKSTLLRIIA   49 (345)
T ss_pred             ECCCCCcHHHHHHHHh
Confidence            59 9999999999999

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=93.85  E-value=0.036  Score=42.91  Aligned_cols=15  Identities=33%  Similarity=0.321  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.+|
T Consensus        10 iG~~GaGKStl~~~La   25 (172)
T PRK05057         10 VGPMGAGKSTIGRQLA   25 (172)
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            49 9999999999999

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=93.84  E-value=0.12  Score=42.37  Aligned_cols=15  Identities=33%  Similarity=0.534  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||+|...++
T Consensus        37 ~GpSGSGKSTLLniig   52 (226)
T COG1136          37 VGPSGSGKSTLLNLLG   52 (226)
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999999

>PRK12338 hypothetical protein; Provisional

Probab=93.83  E-value=0.035  Score=47.69  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=17.4

Q ss_pred             cc-CCCcHHHHHHHHH-ccccccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDLKEF   64 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l~~v   64 (170)
                      -| ||+|||++|+++| .+++..+
T Consensus        10 ~G~sGsGKST~a~~la~~l~~~~~   33 (319)
T PRK12338         10 GSASGIGKSTIASELARTLNIKHL   33 (319)
T ss_pred             ECCCCCCHHHHHHHHHHHCCCeEE
Confidence            38 9999999999999 4454444

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=93.79  E-value=0.043  Score=42.55  Aligned_cols=19  Identities=26%  Similarity=0.403  Sum_probs=15.9

Q ss_pred             cc-CCCcHHHHHHHHHcccc
Q 036857           43 WG-PYTGKSSLIAAMADLDL   61 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA~~~l   61 (170)
                      .| ||+|||++++.++..++
T Consensus         5 tG~~gsGKst~~~~l~~~g~   24 (179)
T cd02022           5 TGGIGSGKSTVAKLLKELGI   24 (179)
T ss_pred             ECCCCCCHHHHHHHHHHCCC
Confidence            49 99999999999994443

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=93.76  E-value=0.038  Score=42.83  Aligned_cols=14  Identities=21%  Similarity=0.330  Sum_probs=13.8

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||+|||++++.++
T Consensus        10 G~~GsGKsT~~~~L~   24 (195)
T TIGR00041        10 GIDGAGKTTQANLLK   24 (195)
T ss_pred             CCCCCCHHHHHHHHH
Confidence            9 9999999999999

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=93.75  E-value=0.059  Score=43.92  Aligned_cols=44  Identities=16%  Similarity=0.151  Sum_probs=25.3

Q ss_pred             CCcccCCCCCCCCcccccCChhhHHHhhcCccc-CCCcHHHHHHHHH
Q 036857           12 SYWNSNKFEHPATSNTIATDFDMNKALVDDYWG-PYTGKSSLIAAMA   57 (170)
Q Consensus        12 ~~w~~~~~~~p~~~~~v~~~~~~k~~l~~~~~G-PGtGKT~la~aiA   57 (170)
                      +-|.+++-.+...++++-+.-.-.+.++ . .| +|||||++...+|
T Consensus         8 ~~sl~y~g~~~~~le~vsL~ia~ge~vv-~-lGpSGcGKTTLLnl~A   52 (259)
T COG4525           8 HLSLSYEGKPRSALEDVSLTIASGELVV-V-LGPSGCGKTTLLNLIA   52 (259)
T ss_pred             heEEecCCcchhhhhccceeecCCCEEE-E-EcCCCccHHHHHHHHh
Confidence            3455544444334555544322222111 1 49 9999999999999

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=93.75  E-value=0.11  Score=42.89  Aligned_cols=14  Identities=36%  Similarity=0.510  Sum_probs=13.8

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | +|+|||.+|++|+
T Consensus        40 GESGSGKSLiAK~Ic   54 (330)
T COG4170          40 GESGSGKSLIAKAIC   54 (330)
T ss_pred             ccCCCchhHHHHHHh
Confidence            9 9999999999999

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=93.72  E-value=0.091  Score=45.23  Aligned_cols=46  Identities=15%  Similarity=0.427  Sum_probs=26.7

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHID  122 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD  122 (170)
                      |.++++||--+-+.     ......+.+.+..+..   .+..||++|...+.+.
T Consensus       191 P~lLiLDEPt~gLD-----~~~r~~l~~~l~~l~~---~g~tilisSH~l~e~~  236 (340)
T PRK13536        191 PQLLILDEPTTGLD-----PHARHLIWERLRSLLA---RGKTILLTTHFMEEAE  236 (340)
T ss_pred             CCEEEEECCCCCCC-----HHHHHHHHHHHHHHHh---CCCEEEEECCCHHHHH
Confidence            89999998744332     2223344444444432   3567788887766553

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=93.68  E-value=0.041  Score=42.05  Aligned_cols=15  Identities=33%  Similarity=0.395  Sum_probs=13.9

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.+|
T Consensus         6 ~G~~G~GKTt~~~~la   21 (173)
T cd03115           6 VGLQGVGKTTTAAKLA   21 (173)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999998

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=93.64  E-value=0.93  Score=43.67  Aligned_cols=47  Identities=15%  Similarity=0.130  Sum_probs=38.8

Q ss_pred             CCCcccCCCCCCCCcccccCChhhHHHhhcCc------c-c-CCCcHHHHHHHHH
Q 036857           11 PSYWNSNKFEHPATSNTIATDFDMNKALVDDY------W-G-PYTGKSSLIAAMA   57 (170)
Q Consensus        11 ~~~w~~~~~~~p~~~~~v~~~~~~k~~l~~~~------~-G-PGtGKT~la~aiA   57 (170)
                      ...|-+..+.+|..-..-+.-|.+...+....      + - .|-|||+++-..+
T Consensus         4 ~~~~~~sk~~~P~~~~~~v~R~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~   58 (894)
T COG2909           4 ALMLIPSKLVRPVRPDNYVVRPRLLDRLRRANDYRLILISAPAGFGKTTLLAQWR   58 (894)
T ss_pred             CCCCCccccCCCCCcccccccHHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHH
Confidence            36788888999999888888888888887764      3 4 6999999998885

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=93.62  E-value=0.091  Score=46.96  Aligned_cols=35  Identities=14%  Similarity=0.316  Sum_probs=28.1

Q ss_pred             CCcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH
Q 036857           23 ATSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        23 ~~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA   57 (170)
                      ..|+.+..-.+.++.+...+            .| +|+|||++.|-+-
T Consensus       263 v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllf  310 (497)
T COG5265         263 VAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLF  310 (497)
T ss_pred             EEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHH
Confidence            45777777777777776666            59 9999999999987

>TIGR03263 guanyl_kin guanylate kinase

Probab=93.62  E-value=0.042  Score=42.03  Aligned_cols=15  Identities=40%  Similarity=0.532  Sum_probs=14.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++++.++
T Consensus         7 ~G~~GsGKsTl~~~L~   22 (180)
T TIGR03263         7 SGPSGVGKSTLVKALL   22 (180)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999999

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=93.56  E-value=0.048  Score=43.78  Aligned_cols=24  Identities=25%  Similarity=0.439  Sum_probs=18.7

Q ss_pred             c-CCCcHHHHHHHHHcccccccccc
Q 036857           44 G-PYTGKSSLIAAMADLDLKEFQSN   67 (170)
Q Consensus        44 G-PGtGKT~la~aiA~~~l~~v~~~   67 (170)
                      | ||+|||++|+.+++.++..+..+
T Consensus         9 G~igsGKStva~~~~~~G~~vidaD   33 (201)
T COG0237           9 GGIGSGKSTVAKILAELGFPVIDAD   33 (201)
T ss_pred             cCCCCCHHHHHHHHHHcCCeEEEcc
Confidence            8 99999999999996555544433

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=93.54  E-value=0.044  Score=42.55  Aligned_cols=14  Identities=43%  Similarity=0.527  Sum_probs=13.7

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | +|+|||++++.++
T Consensus         6 G~~GsGKSTl~~~L~   20 (193)
T cd01673           6 GNIGAGKSTLAKELA   20 (193)
T ss_pred             CCCCCCHHHHHHHHH
Confidence            9 9999999999999

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=93.54  E-value=0.044  Score=41.98  Aligned_cols=14  Identities=43%  Similarity=0.650  Sum_probs=13.8

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | +|+|||++++.++
T Consensus         7 G~~GsGKtT~~~~L~   21 (200)
T cd01672           7 GIDGAGKTTLIELLA   21 (200)
T ss_pred             CCCCCCHHHHHHHHH
Confidence            9 9999999999999

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK00300 gmk guanylate kinase; Provisional

Probab=93.52  E-value=0.045  Score=42.87  Aligned_cols=15  Identities=40%  Similarity=0.545  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++++.++
T Consensus        11 ~G~sGsGKstl~~~l~   26 (205)
T PRK00300         11 SGPSGAGKSTLVKALL   26 (205)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=93.51  E-value=0.046  Score=42.33  Aligned_cols=15  Identities=33%  Similarity=0.477  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| ||+|||++|++++
T Consensus        24 ~G~~GsGKstla~~l~   39 (184)
T TIGR00455        24 TGLSGSGKSTIANALE   39 (184)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999998

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=93.49  E-value=0.047  Score=38.37  Aligned_cols=15  Identities=33%  Similarity=0.477  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++++.
T Consensus         2 iG~~~~GKStl~~~l~   17 (157)
T cd00882           2 VGDSGVGKTSLLNRLL   17 (157)
T ss_pred             CCcCCCcHHHHHHHHH
Confidence            39 9999999999998

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=93.47  E-value=0.044  Score=45.25  Aligned_cols=15  Identities=40%  Similarity=0.508  Sum_probs=13.9

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||||||++|..+|
T Consensus        42 ~G~pGtGKT~l~~qf~   57 (259)
T TIGR03878        42 TGVSDTGKSLMVEQFA   57 (259)
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            69 9999999999887

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=93.45  E-value=0.16  Score=41.21  Aligned_cols=15  Identities=33%  Similarity=0.519  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|.|||++.+.++
T Consensus        36 tG~n~~gKs~~l~~i~   51 (218)
T cd03286          36 TGPNMGGKSTLLRTVC   51 (218)
T ss_pred             ECCCCCchHHHHHHHH
Confidence            59 9999999999998

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases

Probab=93.42  E-value=0.046  Score=43.32  Aligned_cols=15  Identities=47%  Similarity=0.738  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.++
T Consensus         4 ~G~pGsGKSt~i~~~~   19 (234)
T PF01443_consen    4 HGVPGSGKSTLIKKLL   19 (234)
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            59 9999999999998

Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=93.41  E-value=0.057  Score=45.78  Aligned_cols=18  Identities=39%  Similarity=0.460  Sum_probs=15.5

Q ss_pred             c-CCCcHHHHHHHHH-cccc
Q 036857           44 G-PYTGKSSLIAAMA-DLDL   61 (170)
Q Consensus        44 G-PGtGKT~la~aiA-~~~l   61 (170)
                      | ||||||++++.+| .+++
T Consensus       140 G~~GsGKStvg~~La~~Lg~  159 (309)
T PRK08154        140 GLRGAGKSTLGRMLAARLGV  159 (309)
T ss_pred             CCCCCCHHHHHHHHHHHcCC
Confidence            9 9999999999999 4443

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=93.41  E-value=0.049  Score=38.72  Aligned_cols=16  Identities=50%  Similarity=0.794  Sum_probs=14.7

Q ss_pred             cc-CCCcHHHHHHHHHc
Q 036857           43 WG-PYTGKSSLIAAMAD   58 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA~   58 (170)
                      .| ||+|||++.+++.+
T Consensus         5 iG~~~~GKSTlin~l~~   21 (116)
T PF01926_consen    5 IGRPNVGKSTLINALTG   21 (116)
T ss_dssp             EESTTSSHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHhc
Confidence            49 99999999999993

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB

Probab=93.37  E-value=0.092  Score=48.24  Aligned_cols=35  Identities=11%  Similarity=0.153  Sum_probs=28.2

Q ss_pred             CCcccccCChhhHHHhhcCc---------cc-CCCcHHHHHHHHH
Q 036857           23 ATSNTIATDFDMNKALVDDY---------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        23 ~~~~~v~~~~~~k~~l~~~~---------~G-PGtGKT~la~aiA   57 (170)
                      .+++++.+.++..+.+...+         -| .|+|||++..++.
T Consensus       293 ~~l~~lg~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a~l  337 (564)
T TIGR02538       293 LDIDKLGFEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTAL  337 (564)
T ss_pred             CCHHHcCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHH
Confidence            57899999998777766544         39 9999999987766

This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=93.37  E-value=0.049  Score=43.51  Aligned_cols=15  Identities=33%  Similarity=0.501  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||||||+++..+|
T Consensus        25 ~G~~GsGKT~l~~~l~   40 (235)
T cd01123          25 FGEFGSGKTQLCHQLA   40 (235)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            69 9999999999997

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>PRK15453 phosphoribulokinase; Provisional

Probab=93.33  E-value=0.049  Score=46.20  Aligned_cols=14  Identities=21%  Similarity=0.392  Sum_probs=13.7

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||+|||+++++++
T Consensus        12 G~SGsGKTTva~~l~   26 (290)
T PRK15453         12 GSSGAGTTTVKRAFE   26 (290)
T ss_pred             CCCCCCHHHHHHHHH
Confidence            9 9999999999998

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function

Probab=93.30  E-value=0.046  Score=46.97  Aligned_cols=15  Identities=40%  Similarity=0.426  Sum_probs=13.6

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| ||||||.+|-.+|
T Consensus         7 ~G~aGTGKTvla~~l~   22 (352)
T PF09848_consen    7 TGGAGTGKTVLALNLA   22 (352)
T ss_pred             EecCCcCHHHHHHHHH
Confidence            39 9999999999888

It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=93.29  E-value=0.26  Score=44.42  Aligned_cols=15  Identities=27%  Similarity=0.246  Sum_probs=13.7

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||||||++|..++
T Consensus        27 ~G~pGsGKT~la~qfl   42 (484)
T TIGR02655        27 SGTSGTGKTLFSIQFL   42 (484)
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            49 9999999999886

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	170
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	99.97
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	99.97
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	99.97
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	99.97
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	99.97
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	99.97
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.95
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.93
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.89
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	99.88
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	99.86
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	99.86
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	99.86
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	99.85
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	99.85
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	99.85
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.83
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	99.82
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	99.82
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	99.82
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	99.82
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	99.82
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	99.82
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	99.81
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	99.8
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	99.8
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	99.77
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	99.77
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	99.71
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.69
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	99.62
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	99.58
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	99.53
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	99.53
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	99.53
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	99.52
2chg_A	226	Replication factor C small subunit; DNA-binding pr	99.49
2r44_A	331	Uncharacterized protein; putative ATPase, structur	99.44
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	99.41
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	99.41
2chq_A	319	Replication factor C small subunit; DNA-binding pr	99.41
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	99.41
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	99.4
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	99.4
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	99.4
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	99.39
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	99.36
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	99.34
3pvs_A	447	Replication-associated recombination protein A; ma	99.33
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	99.33
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	99.33
3bos_A	242	Putative DNA replication factor; P-loop containing	99.29
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.27
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	99.26
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	99.25
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	99.25
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.24
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	99.23
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	99.23
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	99.23
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.23
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	99.23
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.22
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	99.22
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.2
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	99.19
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.13
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	99.13
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	99.11
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.09
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	99.05
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	99.04
3co5_A	143	Putative two-component system transcriptional RES	99.04
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	99.02
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	99.02
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	99.01
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.98
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	98.95
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	98.94
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	98.94
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.94
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	98.93
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	98.91
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	98.74
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.63
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	98.52
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	98.47
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	98.43
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	98.35
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	98.31
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.29
2qgz_A	308	Helicase loader, putative primosome component; str	98.26
1tue_A	212	Replication protein E1; helicase, replication, E1E	98.14
3f8t_A	506	Predicted ATPase involved in replication control,	98.11
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	97.98
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.86
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.77
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	97.67
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	97.38
2fna_A	357	Conserved hypothetical protein; structural genomic	97.31
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.18
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	97.15
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.92
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	96.88
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	96.77
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.76
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.75
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.63
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.58
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.5
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.43
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.24
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	96.19
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.19
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.14
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.14
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	96.09
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.09
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.02
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.02
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	95.95
1via_A	175	Shikimate kinase; structural genomics, transferase	95.91
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	95.87
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	95.86
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	95.83
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	95.81
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	95.8
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	95.79
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	95.79
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	95.72
1jr3_D	343	DNA polymerase III, delta subunit; processivity, p	95.72
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	95.71
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	95.71
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	95.7
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	95.66
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	95.63
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	95.62
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	95.61
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	95.59
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	95.58
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	95.57
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	95.54
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	95.54
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	95.49
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	95.46
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	95.45
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	95.44
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	95.44
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	95.44
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	95.43
2vli_A	183	Antibiotic resistance protein; transferase, tunica	95.42
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	95.42
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	95.4
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	95.4
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	95.4
3io5_A	333	Recombination and repair protein; storage dimer, i	95.38
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	95.38
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	95.35
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	95.34
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	95.34
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	95.25
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	95.25
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	95.23
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	95.21
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	95.2
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	95.2
2r6a_A	454	DNAB helicase, replicative helicase; replication,	95.19
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	95.13
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.11
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	95.1
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	95.1
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	95.08
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	95.08
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	95.08
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	95.08
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	95.05
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	95.05
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	95.01
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	95.0
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	94.94
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	94.93
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	94.92
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	94.91
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	94.9
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	94.83
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	94.83
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	94.8
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	94.75
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	94.73
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	94.72
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	94.67
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	94.65
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	94.64
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	94.64
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.64
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	94.62
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	94.55
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	94.53
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	94.5
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	94.48
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	94.47
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	94.46
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	94.43
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	94.42
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	94.39
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	94.38
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	94.38
2cvh_A	220	DNA repair and recombination protein RADB; filamen	94.35
4a74_A	231	DNA repair and recombination protein RADA; hydrola	94.26
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	94.16
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	94.16
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	94.16
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	94.15
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	94.11
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	94.05
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	94.02
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	94.01
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	93.97
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	93.91
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	93.89
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	93.82
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	93.71
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	93.52
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	93.47
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	93.45
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	93.38
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	93.38
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	93.35
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	93.33
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	93.27
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	93.26
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	93.24
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	93.22
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	93.17
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	93.15
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	93.1
2wjy_A	800	Regulator of nonsense transcripts 1; nonsense medi	93.05
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	93.01
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	92.93
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	92.91
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	92.85
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	92.76
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	92.76
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	92.73
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	92.56
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	92.44
2xzl_A	802	ATP-dependent helicase NAM7; hydrolase-RNA complex	92.38
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	92.35
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	92.31
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	92.31
2z43_A	324	DNA repair and recombination protein RADA; archaea	92.31
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	92.24
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	92.2
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	92.15
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	92.13
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	92.11
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	92.09
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	92.08
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	92.07
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	92.04
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	92.01
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	92.0
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	91.98
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	91.94
2wji_A	165	Ferrous iron transport protein B homolog; membrane	91.94
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	91.88
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	91.86
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	91.81
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	91.81
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	91.8
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	91.76
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	91.69
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	91.65
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	91.65
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	91.6
1s2m_A	400	Putative ATP-dependent RNA helicase DHH1; ATP-bind	91.59
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	91.59
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	91.49
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	91.49
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	91.49
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	91.46
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	91.45
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	91.37
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	91.35
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	91.3
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	91.24
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	91.23
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	91.21
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	91.18
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	91.12
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	91.05
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	91.01
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	91.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	90.98
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	90.98
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	90.93
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	90.91
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	90.88
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	90.86
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	90.86
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	90.84
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	90.83
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	90.79
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	90.76
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	90.69
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	90.69
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	90.68
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	90.68
2hf9_A	226	Probable hydrogenase nickel incorporation protein	90.61
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	90.56
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	90.52
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	90.48
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	90.46
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	90.4
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	90.4
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	90.4
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	90.39
2ged_A	193	SR-beta, signal recognition particle receptor beta	90.37
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	90.36
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	90.36
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	90.33
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	90.24
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	90.22
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	90.19
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	90.18
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	90.09
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	90.07
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	90.04
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	90.03
1nrj_B	218	SR-beta, signal recognition particle receptor beta	90.03
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	90.01
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	90.01
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	89.99
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	89.96
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	89.95
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	89.92
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	89.86
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	89.84
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	89.84
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	89.83
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	89.81
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	89.75
1b0u_A	262	Histidine permease; ABC transporter, transport pro	89.74
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	89.74
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	89.73
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	89.71
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	89.71
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	89.67
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	89.63
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	89.61
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	89.58
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	89.55
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	89.55
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	89.51
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	89.46
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	89.45
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	89.44
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	89.4
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	89.37
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	89.33
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	89.28
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	89.28
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	89.24
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	89.21
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	89.21
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	89.21
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	89.19
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	89.15
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	89.14
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	89.13
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	89.12
1g6h_A	257	High-affinity branched-chain amino acid transport	89.12
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	89.1
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	89.06
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	89.04
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	88.99
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	88.98
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	88.97
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	88.95
3pey_A	395	ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A	88.94
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	88.9
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	88.9
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	88.89
1p9r_A	418	General secretion pathway protein E; bacterial typ	88.87
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	88.87
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	88.87
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	88.86
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	88.85
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	88.82
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	88.8
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	88.8
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	88.78
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	88.78
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	88.77
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	88.74
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	88.68
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	88.67
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	88.66
1ji0_A	240	ABC transporter; ATP binding protein, structural g	88.6
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	88.55
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	88.53
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	88.53
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	88.53
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	88.53
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	88.52
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	88.5
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	88.42
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	88.42
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	88.41
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	88.4
1sgw_A	214	Putative ABC transporter; structural genomics, P p	88.38
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	88.37
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	88.35
2ghi_A	260	Transport protein; multidrug resistance protein, M	88.34
3kta_A	182	Chromosome segregation protein SMC; structural mai	88.32
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	88.32
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	88.31
2eyu_A	261	Twitching motility protein PILT; pilus retraction	88.3
2fh5_B	214	SR-beta, signal recognition particle receptor beta	88.28
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	88.26
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	88.25
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	88.23
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	88.2
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	88.19
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	88.15
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	88.12
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	88.09
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	88.04
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	88.03
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	88.0
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	88.0
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	87.91
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	87.9
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	87.9
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	87.9
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	87.88
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	87.88
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	87.83
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	87.82
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	87.76
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	87.76
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	87.74
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	87.73
3lfu_A	647	DNA helicase II; SF1 helicase, ATP-binding, DNA da	87.72
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	87.71
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	87.7
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	87.7
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	87.59
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	87.59
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	87.53
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	87.5
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	87.48
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	87.48
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	87.47
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	87.44
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	87.41
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	87.4
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	87.39
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	87.38
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	87.36
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	87.33
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	87.31
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	87.29
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	87.28
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	87.27
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	87.25
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	87.2
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	87.12
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	87.1
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	87.04
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	86.9
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	86.82
2c61_A	469	A-type ATP synthase non-catalytic subunit B; hydro	86.82
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	86.69
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	86.65
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	86.65
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	86.53
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	86.42
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	86.4
2ewv_A	372	Twitching motility protein PILT; pilus retraction	86.33
3end_A	307	Light-independent protochlorophyllide reductase ir	86.3
3llu_A	196	RAS-related GTP-binding protein C; structural geno	86.19
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	86.19
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	86.15
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	86.1
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	86.09
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	86.09
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	86.07
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	86.01
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	86.0
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	85.93
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	85.89
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	85.8
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	85.79
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	85.75
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	85.67
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	85.66
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	85.53
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	85.46
3cwq_A	209	Para family chromosome partitioning protein; alpha	85.42

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3e-32  Score=236.49  Aligned_cols=147  Identities=22%  Similarity=0.309  Sum_probs=117.4

Q ss_pred             CCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---cccc-----cccccc
Q 036857           20 EHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDL-----KEFQSN   67 (170)
Q Consensus        20 ~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l-----~~v~~~   67 (170)
                      .+..+|++|++.+++|++|.+.+                       || ||||||++|+|+|   +.++     +.+...
T Consensus       142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk  221 (405)
T 4b4t_J          142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQK  221 (405)
T ss_dssp             SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCS
T ss_pred             CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhcc
Confidence            45678999999999999998877                       69 9999999999999   2222     222221


Q ss_pred             -------------------CceeEeeechhhhccCCc--------cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCC
Q 036857           68 -------------------SRSILVIEDAVTSFESNA--------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDH  120 (170)
Q Consensus        68 -------------------~p~il~iDEiD~~~~~~~--------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~  120 (170)
                                         +||||||||+|++++.+.        ...+++++||++|||+..  ..+++||+|||+++.
T Consensus       222 ~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~V~vIaATNrpd~  299 (405)
T 4b4t_J          222 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET--SKNIKIIMATNRLDI  299 (405)
T ss_dssp             STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC--CCCEEEEEEESCSSS
T ss_pred             ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC--CCCeEEEeccCChhh
Confidence                               299999999999997321        235689999999999976  578999999999999


Q ss_pred             CCCCCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhhcC-CCCHHHHHHhh
Q 036857          121 IDPVPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAKI-QATPAEVPGEL  168 (170)
Q Consensus       121 lD~AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~~-~~s~a~i~~~l  168 (170)
                      ||||++||||||++|+|++|+.  +..+++.            +..++... .+|+|+|..++
T Consensus       300 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~  362 (405)
T 4b4t_J          300 LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVC  362 (405)
T ss_dssp             SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHH
T ss_pred             CCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHH
Confidence            9999999999999999999999  4455542            33444333 58999987764

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.2e-31  Score=234.73  Aligned_cols=149  Identities=19%  Similarity=0.210  Sum_probs=117.6

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---cccc-----cccc
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDL-----KEFQ   65 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l-----~~v~   65 (170)
                      ...++.+|++|++.+++|++|...+                       || ||||||++|+|+|   +..+     +.+.
T Consensus       173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~  252 (434)
T 4b4t_M          173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV  252 (434)
T ss_dssp             ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred             CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence            3456678999999999999998776                       69 9999999999999   2222     2222


Q ss_pred             cc-------------------CceeEeeechhhhccCCc--------cchHHHHHHHHHhhchhccCCCCeEEEEeCCCC
Q 036857           66 SN-------------------SRSILVIEDAVTSFESNA--------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYK  118 (170)
Q Consensus        66 ~~-------------------~p~il~iDEiD~~~~~~~--------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~  118 (170)
                      ..                   +||||||||+|+++..+.        ...+++++||++|||+.+  .++++||+|||++
T Consensus       253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~--~~~ViVIaaTNrp  330 (434)
T 4b4t_M          253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS--DDRVKVLAATNRV  330 (434)
T ss_dssp             SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS--SCSSEEEEECSSC
T ss_pred             hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC--CCCEEEEEeCCCc
Confidence            21                   299999999999997432        224578899999999976  5789999999999


Q ss_pred             CCCCCCCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhhcC-CCCHHHHHHhh
Q 036857          119 DHIDPVPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAKI-QATPAEVPGEL  168 (170)
Q Consensus       119 ~~lD~AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~~-~~s~a~i~~~l  168 (170)
                      +.||||++||||||++|+|++|+.  +..+++.            +..++... .+|+|+|..++
T Consensus       331 ~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~  395 (434)
T 4b4t_M          331 DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVT  395 (434)
T ss_dssp             CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHH
T ss_pred             hhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHH
Confidence            999999999999999999999999  4555543            33333333 58999987764

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-31  Score=234.48  Aligned_cols=149  Identities=17%  Similarity=0.240  Sum_probs=118.5

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---cccc-----cccc
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDL-----KEFQ   65 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l-----~~v~   65 (170)
                      ...+..+|++|++.+++|++|.+.+                       || ||||||++|+|+|   +..+     +.+.
T Consensus       174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~  253 (437)
T 4b4t_I          174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI  253 (437)
T ss_dssp             ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred             ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhh
Confidence            4456679999999999999998877                       69 9999999999999   2222     2222


Q ss_pred             cc-------------------CceeEeeechhhhccCC--------ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCC
Q 036857           66 SN-------------------SRSILVIEDAVTSFESN--------AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYK  118 (170)
Q Consensus        66 ~~-------------------~p~il~iDEiD~~~~~~--------~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~  118 (170)
                      ..                   +||||||||+|+++..+        ....++++++|++|||...  .++++||+|||++
T Consensus       254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~--~~~ViVIaATNrp  331 (437)
T 4b4t_I          254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD--RGDVKVIMATNKI  331 (437)
T ss_dssp             CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC--SSSEEEEEEESCS
T ss_pred             hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC--CCCEEEEEeCCCh
Confidence            21                   29999999999999733        1335788999999999876  5789999999999


Q ss_pred             CCCCCCCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhhc-CCCCHHHHHHhh
Q 036857          119 DHIDPVPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAK-IQATPAEVPGEL  168 (170)
Q Consensus       119 ~~lD~AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~-~~~s~a~i~~~l  168 (170)
                      +.||||++||||||++|+|++|+.  +..++..            +..++.. ..+|+|+|.+++
T Consensus       332 d~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~  396 (437)
T 4b4t_I          332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMC  396 (437)
T ss_dssp             TTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHH
T ss_pred             hhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHH
Confidence            999999999999999999999999  4445432            3344433 358999988764

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.3e-31  Score=233.11  Aligned_cols=147  Identities=20%  Similarity=0.240  Sum_probs=117.1

Q ss_pred             CCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---cccc-----cccccc
Q 036857           20 EHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDL-----KEFQSN   67 (170)
Q Consensus        20 ~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l-----~~v~~~   67 (170)
                      .+..+|++|++.+++|++|...+                       || ||||||++|+|+|   +.++     +.+.+.
T Consensus       175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk  254 (437)
T 4b4t_L          175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDK  254 (437)
T ss_dssp             SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred             CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccc
Confidence            45668999999999999998777                       69 9999999999999   2222     222221


Q ss_pred             -------------------CceeEeeechhhhccCC--------ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCC
Q 036857           68 -------------------SRSILVIEDAVTSFESN--------AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDH  120 (170)
Q Consensus        68 -------------------~p~il~iDEiD~~~~~~--------~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~  120 (170)
                                         +||||||||+|+++..+        ....+++++||++|||+..  ..+++||+|||+++.
T Consensus       255 ~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~vivI~ATNrp~~  332 (437)
T 4b4t_L          255 YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN--LGQTKIIMATNRPDT  332 (437)
T ss_dssp             SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC--TTSSEEEEEESSTTS
T ss_pred             cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC--CCCeEEEEecCCchh
Confidence                               19999999999999733        1235678999999999976  478999999999999


Q ss_pred             CCCCCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhhcC-CCCHHHHHHhh
Q 036857          121 IDPVPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAKI-QATPAEVPGEL  168 (170)
Q Consensus       121 lD~AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~~-~~s~a~i~~~l  168 (170)
                      ||||++||||||++|+|++|+.  +..++..            +..++... .+|+|+|..++
T Consensus       333 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~  395 (437)
T 4b4t_L          333 LDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCA  395 (437)
T ss_dssp             SCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHH
T ss_pred             hCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHH
Confidence            9999999999999999999999  4455543            33344333 58999988764

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.4e-31  Score=229.78  Aligned_cols=148  Identities=22%  Similarity=0.292  Sum_probs=116.3

Q ss_pred             CCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---ccc-----cccccc
Q 036857           19 FEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLD-----LKEFQS   66 (170)
Q Consensus        19 ~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~-----l~~v~~   66 (170)
                      -.+..+|++|++.+++|++|...+                       || ||||||++|+|+|   +..     .+.+.+
T Consensus       165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~  244 (428)
T 4b4t_K          165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH  244 (428)
T ss_dssp             SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred             CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence            345568999999999999998777                       69 9999999999999   222     222222


Q ss_pred             -------------------cCceeEeeechhhhccCC--------ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC
Q 036857           67 -------------------NSRSILVIEDAVTSFESN--------AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD  119 (170)
Q Consensus        67 -------------------~~p~il~iDEiD~~~~~~--------~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~  119 (170)
                                         .+||||||||+|+++..+        ....+.+++||++|||+.+  ..+++||+|||+++
T Consensus       245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~--~~~v~vI~aTN~~~  322 (428)
T 4b4t_K          245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ--STNVKVIMATNRAD  322 (428)
T ss_dssp             SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS--SCSEEEEEEESCSS
T ss_pred             cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC--CCCEEEEEecCChh
Confidence                               129999999999999732        2345789999999999976  57899999999999


Q ss_pred             CCCCCCCCCCccceEEEcC-CCCc--chHHHHH------------HHHHhhc-CCCCHHHHHHhh
Q 036857          120 HIDPVPLRPSCMDMHFHLS-SHTF--RHYLFEK------------IEERLAK-IQATPAEVPGEL  168 (170)
Q Consensus       120 ~lD~AllRpgR~d~~i~~~-~p~~--~~~l~~~------------~~~~~~~-~~~s~a~i~~~l  168 (170)
                      .||||++||||||++|+|+ +|+.  +..++..            +..++.. ..+|+|+|..++
T Consensus       323 ~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~  387 (428)
T 4b4t_K          323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIM  387 (428)
T ss_dssp             SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHH
T ss_pred             hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHH
Confidence            9999999999999999996 7988  4444432            3333333 358999988764

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-30  Score=229.72  Aligned_cols=149  Identities=20%  Similarity=0.220  Sum_probs=117.3

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---cccc-----cccc
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDL-----KEFQ   65 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l-----~~v~   65 (170)
                      .-.+..+|++|++.+++|++|.+.+                       || ||||||++|+|+|   +..+     +.+.
T Consensus       201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~  280 (467)
T 4b4t_H          201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV  280 (467)
T ss_dssp             ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred             cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhh
Confidence            3456679999999999999998776                       69 9999999999999   2222     2222


Q ss_pred             cc-------------------CceeEeeechhhhccCCc--------cchHHHHHHHHHhhchhccCCCCeEEEEeCCCC
Q 036857           66 SN-------------------SRSILVIEDAVTSFESNA--------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYK  118 (170)
Q Consensus        66 ~~-------------------~p~il~iDEiD~~~~~~~--------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~  118 (170)
                      +.                   +||||||||+|+++..+.        ...++++++|++|||...  ..+++||+|||++
T Consensus       281 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~ViVIaATNrp  358 (467)
T 4b4t_H          281 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP--RGNIKVMFATNRP  358 (467)
T ss_dssp             CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC--TTTEEEEEECSCT
T ss_pred             cccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC--CCcEEEEeCCCCc
Confidence            21                   299999999999997431        234678899999999876  5789999999999


Q ss_pred             CCCCCCCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhhcC-CCCHHHHHHhh
Q 036857          119 DHIDPVPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAKI-QATPAEVPGEL  168 (170)
Q Consensus       119 ~~lD~AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~~-~~s~a~i~~~l  168 (170)
                      +.||||++||||||++|+|++|+.  +..+++.            +..+.... .+|+|+|..++
T Consensus       359 d~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~  423 (467)
T 4b4t_H          359 NTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVC  423 (467)
T ss_dssp             TSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHH
T ss_pred             ccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHH
Confidence            999999999999999999999999  4555542            33333333 58999988764

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.95  E-value=1.8e-28  Score=227.92  Aligned_cols=147  Identities=19%  Similarity=0.235  Sum_probs=99.6

Q ss_pred             CCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---ccccc-----c----
Q 036857           20 EHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDLK-----E----   63 (170)
Q Consensus        20 ~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l~-----~----   63 (170)
                      .+..+|+++++.+++|++|.+.+                       || ||||||++|+|+|   +.++.     .    
T Consensus       471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~  550 (806)
T 3cf2_A          471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM  550 (806)
T ss_dssp             CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT
T ss_pred             CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcc
Confidence            45568999999999999998877                       69 9999999999999   22111     1    


Q ss_pred             -----------ccc----cCceeEeeechhhhccCCc--------cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCC
Q 036857           64 -----------FQS----NSRSILVIEDAVTSFESNA--------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDH  120 (170)
Q Consensus        64 -----------v~~----~~p~il~iDEiD~~~~~~~--------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~  120 (170)
                                 ++.    .+||||||||+|++++.++        ...+.+++||++|||+..  ..+++||+|||+++.
T Consensus       551 ~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~--~~~V~vi~aTN~p~~  628 (806)
T 3cf2_A          551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDI  628 (806)
T ss_dssp             TCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS--SSSEEEECC-CCSSS
T ss_pred             ccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC--CCCEEEEEeCCCchh
Confidence                       111    1299999999999997432        345789999999999976  578999999999999


Q ss_pred             CCCCCCCCCccceEEEcCCCCc--chHHHH------------HHHHHhhcC-CCCHHHHHHhh
Q 036857          121 IDPVPLRPSCMDMHFHLSSHTF--RHYLFE------------KIEERLAKI-QATPAEVPGEL  168 (170)
Q Consensus       121 lD~AllRpgR~d~~i~~~~p~~--~~~l~~------------~~~~~~~~~-~~s~a~i~~~l  168 (170)
                      ||+|++||||||.+|++++|+.  +..+++            ++..++... .+|+|+|.+++
T Consensus       629 lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~  691 (806)
T 3cf2_A          629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEIC  691 (806)
T ss_dssp             SCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHH
T ss_pred             CCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHH
Confidence            9999999999999999999998  223321            234444333 58999988764

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.93  E-value=8.2e-26  Score=210.02  Aligned_cols=146  Identities=18%  Similarity=0.194  Sum_probs=115.5

Q ss_pred             CCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---ccccccc-----c---
Q 036857           21 HPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDLKEF-----Q---   65 (170)
Q Consensus        21 ~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l~~v-----~---   65 (170)
                      +..+|++|++.++++++|.+.+                       || ||||||++||++|   +..+..+     .   
T Consensus       199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~  278 (806)
T 3cf2_A          199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL  278 (806)
T ss_dssp             SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSC
T ss_pred             CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhccc
Confidence            4467999999999999988766                       69 9999999999999   1111111     1   


Q ss_pred             ----------------ccCceeEeeechhhhccCC-----ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCC
Q 036857           66 ----------------SNSRSILVIEDAVTSFESN-----AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPV  124 (170)
Q Consensus        66 ----------------~~~p~il~iDEiD~~~~~~-----~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~A  124 (170)
                                      .++||||||||+|++++.+     +...+.+++|+..||++.+  ..+++||+|||+++.||+|
T Consensus       279 ~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~--~~~V~VIaaTN~~d~LD~A  356 (806)
T 3cf2_A          279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSIDPA  356 (806)
T ss_dssp             TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCG--GGCEEEEEECSSTTTSCTT
T ss_pred             chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccc--cCCEEEEEecCChhhcCHH
Confidence                            1229999999999999732     3446789999999999976  4689999999999999999


Q ss_pred             CCCCCccceEEEcCCCCc--chHHHHH------------HHHHhhc-CCCCHHHHHHhh
Q 036857          125 PLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAK-IQATPAEVPGEL  168 (170)
Q Consensus       125 llRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~-~~~s~a~i~~~l  168 (170)
                      ++||||||++|+++.|+.  +..+++.            +..+... ..+++++|..++
T Consensus       357 LrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv  415 (806)
T 3cf2_A          357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC  415 (806)
T ss_dssp             TTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHH
T ss_pred             HhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHH
Confidence            999999999999999999  4455442            3444433 358999887754

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.89  E-value=7.9e-24  Score=174.34  Aligned_cols=146  Identities=21%  Similarity=0.246  Sum_probs=103.8

Q ss_pred             CCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---ccccc-----------
Q 036857           21 HPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDLK-----------   62 (170)
Q Consensus        21 ~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l~-----------   62 (170)
                      +..+|+++++.+++|+.+...+                       || ||||||++++++|   ..++.           
T Consensus         5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~   84 (274)
T 2x8a_A            5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY   84 (274)
T ss_dssp             -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred             CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence            4568999999999999887643                       69 9999999999999   11111           


Q ss_pred             ---------ccccc----CceeEeeechhhhccCCc-----cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCC
Q 036857           63 ---------EFQSN----SRSILVIEDAVTSFESNA-----YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPV  124 (170)
Q Consensus        63 ---------~v~~~----~p~il~iDEiD~~~~~~~-----~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~A  124 (170)
                               .++..    .|+++|+||+|.++..+.     ...+..++++..|||...  +..++++++||+++.||+|
T Consensus        85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~--~~~~i~ia~tn~p~~LD~a  162 (274)
T 2x8a_A           85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEA--RQQVFIMAATNRPDIIDPA  162 (274)
T ss_dssp             THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCS--TTCEEEEEEESCGGGSCHH
T ss_pred             hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccc--cCCEEEEeecCChhhCCHh
Confidence                     11111    289999999999876321     224567889999999865  4678999999999999999


Q ss_pred             CCCCCccceEEEcCCCCc--chHHHHHH---------------HHHhhc---CCCCHHHHHHhh
Q 036857          125 PLRPSCMDMHFHLSSHTF--RHYLFEKI---------------EERLAK---IQATPAEVPGEL  168 (170)
Q Consensus       125 llRpgR~d~~i~~~~p~~--~~~l~~~~---------------~~~~~~---~~~s~a~i~~~l  168 (170)
                      ++||||||.+|++++|+.  +..+++.+               ..+...   ..+|+|||..++
T Consensus       163 l~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~  226 (274)
T 2x8a_A          163 ILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALV  226 (274)
T ss_dssp             HHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHH
T ss_pred             hcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHH
Confidence            999999999999999999  44444332               222222   268999987654

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=99.88  E-value=1.1e-22  Score=168.60  Aligned_cols=121  Identities=21%  Similarity=0.281  Sum_probs=97.8

Q ss_pred             CCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---ccccc-----cc---
Q 036857           20 EHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDLK-----EF---   64 (170)
Q Consensus        20 ~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l~-----~v---   64 (170)
                      .++.+|+++++.+.+++++...+                       || ||||||++|+++|   ..++.     .+   
T Consensus         9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~   88 (301)
T 3cf0_A            9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM   88 (301)
T ss_dssp             CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred             CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence            45678999999999998876543                       69 9999999999999   11111     11   


Q ss_pred             ------------c----ccCceeEeeechhhhccCC--------ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCC
Q 036857           65 ------------Q----SNSRSILVIEDAVTSFESN--------AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDH  120 (170)
Q Consensus        65 ------------~----~~~p~il~iDEiD~~~~~~--------~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~  120 (170)
                                  +    ...|+||||||+|.+...+        +...+.+++++..||++..  ..+++||+|||+++.
T Consensus        89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~--~~~v~vi~atn~~~~  166 (301)
T 3cf0_A           89 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDI  166 (301)
T ss_dssp             HHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT--TSSEEEEEEESCGGG
T ss_pred             hcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC--CCCEEEEEecCCccc
Confidence                        0    1128999999999988622        2345678999999999864  468999999999999


Q ss_pred             CCCCCCCCCccceEEEcCCCCc
Q 036857          121 IDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       121 lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      +|+|++|||||+..|+++.|+.
T Consensus       167 ld~al~r~gRf~~~i~i~~p~~  188 (301)
T 3cf0_A          167 IDPAILRPGRLDQLIYIPLPDE  188 (301)
T ss_dssp             SCGGGGSTTSSCEEEECCCCCH
T ss_pred             cChHHhcCCccceEEecCCcCH
Confidence            9999999999999999999999

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=99.86  E-value=1.2e-21  Score=164.42  Aligned_cols=145  Identities=21%  Similarity=0.200  Sum_probs=108.3

Q ss_pred             CCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH-cc---cccc-----ccc--
Q 036857           21 HPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA-DL---DLKE-----FQS--   66 (170)
Q Consensus        21 ~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA-~~---~l~~-----v~~--   66 (170)
                      ++.+|+++++.+++|+.|...+                      || ||||||++|+++| .+   .+..     +..  
T Consensus         7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~   86 (322)
T 1xwi_A            7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKW   86 (322)
T ss_dssp             CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSS
T ss_pred             CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhh
Confidence            4568999999999999886433                      79 9999999999999 22   1111     111  


Q ss_pred             -----------------cCceeEeeechhhhccCCc-----cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCC
Q 036857           67 -----------------NSRSILVIEDAVTSFESNA-----YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPV  124 (170)
Q Consensus        67 -----------------~~p~il~iDEiD~~~~~~~-----~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~A  124 (170)
                                       ..|+||||||+|.++..+.     ...+.+++++..+|++... ..+++||+|||+++.+|+|
T Consensus        87 ~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~-~~~v~vI~atn~~~~ld~a  165 (322)
T 1xwi_A           87 LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD-NDGILVLGATNIPWVLDSA  165 (322)
T ss_dssp             CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSC-CTTEEEEEEESCTTTSCHH
T ss_pred             hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccccc-CCCEEEEEecCCcccCCHH
Confidence                             1289999999999987332     2456788999999998642 4689999999999999999


Q ss_pred             CCCCCccceEEEcCCCCc--chHHHH-------------HHHHHhhcC-CCCHHHHHHhh
Q 036857          125 PLRPSCMDMHFHLSSHTF--RHYLFE-------------KIEERLAKI-QATPAEVPGEL  168 (170)
Q Consensus       125 llRpgR~d~~i~~~~p~~--~~~l~~-------------~~~~~~~~~-~~s~a~i~~~l  168 (170)
                      ++|  ||+..+++++|+.  +..++.             .+..+.... .+++++|..++
T Consensus       166 l~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~  223 (322)
T 1xwi_A          166 IRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIV  223 (322)
T ss_dssp             HHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred             HHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence            999  9999999999998  222222             233333333 47888877654

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=99.86  E-value=1.3e-21  Score=172.96  Aligned_cols=120  Identities=23%  Similarity=0.308  Sum_probs=96.4

Q ss_pred             CCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---cccccccc---------
Q 036857           21 HPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---DLDLKEFQ---------   65 (170)
Q Consensus        21 ~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~~~l~~v~---------   65 (170)
                      ...+|+++++.++.++++...+                      || ||||||++|+++|   ...+..+.         
T Consensus        11 ~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~   90 (476)
T 2ce7_A           11 KRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFV   90 (476)
T ss_dssp             CCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCT
T ss_pred             CCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHh
Confidence            4558999999999988876543                      69 9999999999999   22211111         


Q ss_pred             ---------------ccCceeEeeechhhhccCCc--------cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCC
Q 036857           66 ---------------SNSRSILVIEDAVTSFESNA--------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHID  122 (170)
Q Consensus        66 ---------------~~~p~il~iDEiD~~~~~~~--------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD  122 (170)
                                     ...||||||||+|.+...++        .....+++++..||++..  ..+++||+|||+++.+|
T Consensus        91 g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~--~~~viVIaaTn~~~~Ld  168 (476)
T 2ce7_A           91 GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS--KEGIIVMAATNRPDILD  168 (476)
T ss_dssp             THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG--GGTEEEEEEESCGGGSC
T ss_pred             cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC--CCCEEEEEecCChhhhc
Confidence                           11299999999999976432        224678999999998764  46899999999999999


Q ss_pred             CCCCCCCccceEEEcCCCCc
Q 036857          123 PVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       123 ~AllRpgR~d~~i~~~~p~~  142 (170)
                      +|++||||||..|+++.|+.
T Consensus       169 ~allR~gRFd~~i~i~~Pd~  188 (476)
T 2ce7_A          169 PALLRPGRFDKKIVVDPPDM  188 (476)
T ss_dssp             GGGGSTTSSCEEEECCCCCH
T ss_pred             hhhcccCcceeEeecCCCCH
Confidence            99999999999999999997

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=99.86  E-value=1.2e-21  Score=163.59  Aligned_cols=149  Identities=19%  Similarity=0.201  Sum_probs=111.4

Q ss_pred             CCCCCCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---cccc-----cccc
Q 036857           17 NKFEHPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---DLDL-----KEFQ   65 (170)
Q Consensus        17 ~~~~~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~~~l-----~~v~   65 (170)
                      +...++.+|+++++.+++|+.+...+                      || ||||||++|+++|   ...+     ..+.
T Consensus         9 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~   88 (322)
T 3eie_A            9 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV   88 (322)
T ss_dssp             EEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred             eecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHh
Confidence            34667789999999999999886544                      69 9999999999999   1111     1111


Q ss_pred             c-------------------cCceeEeeechhhhccCC-----ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCC
Q 036857           66 S-------------------NSRSILVIEDAVTSFESN-----AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHI  121 (170)
Q Consensus        66 ~-------------------~~p~il~iDEiD~~~~~~-----~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~l  121 (170)
                      .                   ..|+||||||+|.+...+     ....+..++++..+|++... ..+++||+|||+++.|
T Consensus        89 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi~atn~~~~l  167 (322)
T 3eie_A           89 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND-SQGVLVLGATNIPWQL  167 (322)
T ss_dssp             TTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTS-CCCEEEEEEESCGGGS
T ss_pred             hcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccccc-CCceEEEEecCChhhC
Confidence            1                   128999999999998733     23456789999999998643 5689999999999999


Q ss_pred             CCCCCCCCccceEEEcCCCCc--chHHHH-------------HHHHHhhcC-CCCHHHHHHhh
Q 036857          122 DPVPLRPSCMDMHFHLSSHTF--RHYLFE-------------KIEERLAKI-QATPAEVPGEL  168 (170)
Q Consensus       122 D~AllRpgR~d~~i~~~~p~~--~~~l~~-------------~~~~~~~~~-~~s~a~i~~~l  168 (170)
                      |+|++|  ||+..++++.|+.  +..++.             .+..+.... .+++++|..++
T Consensus       168 d~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~  228 (322)
T 3eie_A          168 DSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVV  228 (322)
T ss_dssp             CHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred             CHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence            999999  9999999999999  333332             233333333 47888877654

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=99.85  E-value=4.2e-21  Score=154.65  Aligned_cols=122  Identities=21%  Similarity=0.273  Sum_probs=97.4

Q ss_pred             CCCCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---cccccccc-------
Q 036857           19 FEHPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---DLDLKEFQ-------   65 (170)
Q Consensus        19 ~~~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~~~l~~v~-------   65 (170)
                      ...+.+|+++++.+.+++++...+                      || ||||||++|+++|   ...+..+.       
T Consensus         5 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~   84 (257)
T 1lv7_A            5 DQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM   84 (257)
T ss_dssp             CSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred             cCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence            456778999999999998875432                      69 9999999999999   11111111       


Q ss_pred             -----------------ccCceeEeeechhhhccCCc--------cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCC
Q 036857           66 -----------------SNSRSILVIEDAVTSFESNA--------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDH  120 (170)
Q Consensus        66 -----------------~~~p~il~iDEiD~~~~~~~--------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~  120 (170)
                                       ...|+++|+||+|.+...+.        .....+++++..+|+...  ..++++|+|||+++.
T Consensus        85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~vI~~tn~~~~  162 (257)
T 1lv7_A           85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRPDV  162 (257)
T ss_dssp             CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS--SSCEEEEEEESCTTT
T ss_pred             hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc--CCCEEEEEeeCCchh
Confidence                             01289999999999987332        123678889999999864  468999999999999


Q ss_pred             CCCCCCCCCccceEEEcCCCCc
Q 036857          121 IDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       121 lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      +|++++|||||+..++++.|+.
T Consensus       163 l~~~l~r~~rf~~~i~i~~P~~  184 (257)
T 1lv7_A          163 LDPALLRPGRFDRQVVVGLPDV  184 (257)
T ss_dssp             SCGGGGSTTSSCEEEECCCCCH
T ss_pred             CCHHHcCCCcCCeEEEeCCCCH
Confidence            9999999999999999999998

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=99.85  E-value=4.1e-21  Score=156.20  Aligned_cols=123  Identities=21%  Similarity=0.233  Sum_probs=97.3

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---cccc-----cccc
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDL-----KEFQ   65 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l-----~~v~   65 (170)
                      ...++.+|+++++.+.+++++...+                       || ||||||++|+++|   ...+     ..+.
T Consensus         9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~   88 (285)
T 3h4m_A            9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV   88 (285)
T ss_dssp             ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred             cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence            3455678999999999999886544                       69 9999999999999   1111     1111


Q ss_pred             c-------------------cCceeEeeechhhhccCC--------ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCC
Q 036857           66 S-------------------NSRSILVIEDAVTSFESN--------AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYK  118 (170)
Q Consensus        66 ~-------------------~~p~il~iDEiD~~~~~~--------~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~  118 (170)
                      .                   ..|+||||||+|.++..+        ......+..+++.+++...  ..++++|+|||.+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vI~ttn~~  166 (285)
T 3h4m_A           89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA--RGDVKIIGATNRP  166 (285)
T ss_dssp             CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS--SSSEEEEEECSCG
T ss_pred             HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEeCCCc
Confidence            1                   118999999999997632        2334667778888887754  4689999999999


Q ss_pred             CCCCCCCCCCCccceEEEcCCCCc
Q 036857          119 DHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       119 ~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      +.+|++++|+|||+..++++.|+.
T Consensus       167 ~~l~~~l~~~~Rf~~~i~~~~p~~  190 (285)
T 3h4m_A          167 DILDPAILRPGRFDRIIEVPAPDE  190 (285)
T ss_dssp             GGBCHHHHSTTSEEEEEECCCCCH
T ss_pred             hhcCHHHcCCCcCCeEEEECCCCH
Confidence            999999999999999999999998

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=99.85  E-value=2.7e-21  Score=154.83  Aligned_cols=119  Identities=21%  Similarity=0.285  Sum_probs=89.4

Q ss_pred             CCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---cccccccc----------
Q 036857           22 PATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---DLDLKEFQ----------   65 (170)
Q Consensus        22 p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~~~l~~v~----------   65 (170)
                      +.+|+++++.+.+|+.+...+                      || ||||||++|+++|   ...+..+.          
T Consensus         2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~   81 (262)
T 2qz4_A            2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGG   81 (262)
T ss_dssp             CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTT
T ss_pred             CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccC
Confidence            467999999999998885432                      79 9999999999999   21111111          


Q ss_pred             --------------ccCceeEeeechhhhccCC---------ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCC
Q 036857           66 --------------SNSRSILVIEDAVTSFESN---------AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHID  122 (170)
Q Consensus        66 --------------~~~p~il~iDEiD~~~~~~---------~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD  122 (170)
                                    ...|+||||||+|.+...+         ......+..+++.+++...  ..++++|+|||.++.+|
T Consensus        82 ~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vi~~tn~~~~ld  159 (262)
T 2qz4_A           82 LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT--TDHVIVLASTNRADILD  159 (262)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT--TCCEEEEEEESCGGGGG
T ss_pred             hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC--CCCEEEEecCCChhhcC
Confidence                          1128999999999997632         2334667889999998754  46899999999999999


Q ss_pred             CCCCCCCccceEEEcCCCCc
Q 036857          123 PVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       123 ~AllRpgR~d~~i~~~~p~~  142 (170)
                      ++++|+|||+..++++.|+.
T Consensus       160 ~~l~~~~R~~~~i~i~~p~~  179 (262)
T 2qz4_A          160 GALMRPGRLDRHVFIDLPTL  179 (262)
T ss_dssp             SGGGSTTSCCEEEECCSCCH
T ss_pred             HHHhcCCcCCeEEEeCCcCH
Confidence            99999999999999999998

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=99.82  E-value=1.6e-20  Score=159.44  Aligned_cols=121  Identities=20%  Similarity=0.227  Sum_probs=93.1

Q ss_pred             CCCCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---cccc-----ccccc-
Q 036857           19 FEHPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---DLDL-----KEFQS-   66 (170)
Q Consensus        19 ~~~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~~~l-----~~v~~-   66 (170)
                      ..++.+|+++++.+++++.|...+                      || ||||||++|+++|   ...+     ..+.. 
T Consensus        44 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~  123 (355)
T 2qp9_X           44 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK  123 (355)
T ss_dssp             ---CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC
T ss_pred             cCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh
Confidence            455678999999999998886433                      79 9999999999999   1111     11111 


Q ss_pred             ------------------cCceeEeeechhhhccCC-----ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCC
Q 036857           67 ------------------NSRSILVIEDAVTSFESN-----AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDP  123 (170)
Q Consensus        67 ------------------~~p~il~iDEiD~~~~~~-----~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~  123 (170)
                                        ..|+||||||+|.+...+     ....+..++++..||++... ..+++||+|||+++.||+
T Consensus       124 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vI~atn~~~~ld~  202 (355)
T 2qp9_X          124 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND-SQGVLVLGATNIPWQLDS  202 (355)
T ss_dssp             C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC----CCEEEEEEESCGGGSCH
T ss_pred             hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccccc-CCCeEEEeecCCcccCCH
Confidence                              128999999999998632     23356788899999998642 457999999999999999


Q ss_pred             CCCCCCccceEEEcCCCCc
Q 036857          124 VPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       124 AllRpgR~d~~i~~~~p~~  142 (170)
                      +++|  ||+..++++.|+.
T Consensus       203 al~r--Rf~~~i~i~~P~~  219 (355)
T 2qp9_X          203 AIRR--RFERRIYIPLPDL  219 (355)
T ss_dssp             HHHH--TCCEEEECCCCCH
T ss_pred             HHHc--ccCEEEEeCCcCH
Confidence            9999  9999999999998

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=99.82  E-value=2.9e-20  Score=162.28  Aligned_cols=147  Identities=20%  Similarity=0.205  Sum_probs=108.4

Q ss_pred             CCCCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH-cc---cc-----ccccc
Q 036857           19 FEHPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA-DL---DL-----KEFQS   66 (170)
Q Consensus        19 ~~~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA-~~---~l-----~~v~~   66 (170)
                      ..++.+|+++++.+.+++.|...+                      || ||||||++|+++| .+   .+     ..+..
T Consensus       127 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~  206 (444)
T 2zan_A          127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS  206 (444)
T ss_dssp             CCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred             cCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence            355678999999999998886422                      79 9999999999999 22   11     11111


Q ss_pred             -------------------cCceeEeeechhhhccCC-----ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCC
Q 036857           67 -------------------NSRSILVIEDAVTSFESN-----AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHID  122 (170)
Q Consensus        67 -------------------~~p~il~iDEiD~~~~~~-----~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD  122 (170)
                                         ..|+||||||+|.+++.+     ....+..++|+..||++... ..+++||+|||+++.+|
T Consensus       207 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~-~~~v~vI~atn~~~~ld  285 (444)
T 2zan_A          207 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD-NDGILVLGATNIPWVLD  285 (444)
T ss_dssp             -----CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCC-CSSCEEEEEESCGGGSC
T ss_pred             hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccC-CCCEEEEecCCCccccC
Confidence                               128999999999997632     23457888999999998542 46899999999999999


Q ss_pred             CCCCCCCccceEEEcCCCCc--chHHHH-------------HHHHHhhcC-CCCHHHHHHhh
Q 036857          123 PVPLRPSCMDMHFHLSSHTF--RHYLFE-------------KIEERLAKI-QATPAEVPGEL  168 (170)
Q Consensus       123 ~AllRpgR~d~~i~~~~p~~--~~~l~~-------------~~~~~~~~~-~~s~a~i~~~l  168 (170)
                      ++++|  ||+..+++++|+.  +..++.             .+..+.... .+++++|..++
T Consensus       286 ~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~  345 (444)
T 2zan_A          286 SAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIV  345 (444)
T ss_dssp             HHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             HHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence            99999  9999999999998  222222             233333323 57888887654

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=99.82  E-value=4.8e-20  Score=163.20  Aligned_cols=120  Identities=22%  Similarity=0.237  Sum_probs=97.2

Q ss_pred             CCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---ccccc-----cccc--
Q 036857           21 HPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDLK-----EFQS--   66 (170)
Q Consensus        21 ~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l~-----~v~~--   66 (170)
                      .+.+|+++++...+++++...+                       || ||||||++|+++|   +..+.     .+..  
T Consensus       199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~  278 (489)
T 3hu3_A          199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL  278 (489)
T ss_dssp             TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred             CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence            4567999999999988876544                       69 9999999999999   11111     1111  


Q ss_pred             -----------------cCceeEeeechhhhccCC-----ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCC
Q 036857           67 -----------------NSRSILVIEDAVTSFESN-----AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPV  124 (170)
Q Consensus        67 -----------------~~p~il~iDEiD~~~~~~-----~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~A  124 (170)
                                       ..|++|||||+|.+...+     ......++.|+..||+...  ..+++||+|||+++.||++
T Consensus       279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~--~~~v~vIaaTn~~~~Ld~a  356 (489)
T 3hu3_A          279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSIDPA  356 (489)
T ss_dssp             TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCT--TSCEEEEEEESCGGGBCGG
T ss_pred             cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhcccc--CCceEEEEecCCccccCHH
Confidence                             128999999999998743     2334678889999998865  5689999999999999999


Q ss_pred             CCCCCccceEEEcCCCCc
Q 036857          125 PLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       125 llRpgR~d~~i~~~~p~~  142 (170)
                      +.|+|||+..|+++.|+.
T Consensus       357 l~r~gRf~~~i~i~~P~~  374 (489)
T 3hu3_A          357 LRRFGRFDREVDIGIPDA  374 (489)
T ss_dssp             GGSTTSSCEEEECCCCCH
T ss_pred             HhCCCcCceEEEeCCCCH
Confidence            999999999999999998

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=99.82  E-value=9.9e-20  Score=146.31  Aligned_cols=122  Identities=20%  Similarity=0.272  Sum_probs=93.9

Q ss_pred             CCCCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---ccccc----------
Q 036857           19 FEHPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---DLDLK----------   62 (170)
Q Consensus        19 ~~~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~~~l~----------   62 (170)
                      ..++.+|+++++.++.+.++....                      || ||||||++++++|   .....          
T Consensus         9 ~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~   88 (254)
T 1ixz_A            9 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM   88 (254)
T ss_dssp             CCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred             CCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHH
Confidence            344568999999998887765432                      69 9999999999999   11111          


Q ss_pred             ----------cccc----cCceeEeeechhhhccCC--------ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCC
Q 036857           63 ----------EFQS----NSRSILVIEDAVTSFESN--------AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDH  120 (170)
Q Consensus        63 ----------~v~~----~~p~il~iDEiD~~~~~~--------~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~  120 (170)
                                .++.    ..|+++++||+|.+...+        ......++++++.++|...  +..++++++||+++.
T Consensus        89 ~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~--~~~~i~~a~t~~p~~  166 (254)
T 1ixz_A           89 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDI  166 (254)
T ss_dssp             CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT--TCCEEEEEEESCGGG
T ss_pred             HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC--CCCEEEEEccCCchh
Confidence                      1111    127999999999987532        1224567888999998754  456899999999999


Q ss_pred             CCCCCCCCCccceEEEcCCCCc
Q 036857          121 IDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       121 lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      +|++++|+||||.+|+++.|+.
T Consensus       167 ld~~l~r~~rf~~~i~i~~p~~  188 (254)
T 1ixz_A          167 LDPALLRPGRFDRQIAIDAPDV  188 (254)
T ss_dssp             SCGGGGSTTSSCEEEECCSCCH
T ss_pred             CCHHHcCCCcCCeEEeeCCcCH
Confidence            9999999999999999999998

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=99.82  E-value=5e-20  Score=163.62  Aligned_cols=120  Identities=21%  Similarity=0.301  Sum_probs=96.5

Q ss_pred             CCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---ccc--------c-----
Q 036857           21 HPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---DLD--------L-----   61 (170)
Q Consensus        21 ~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~~~--------l-----   61 (170)
                      ++.+|+++++.++.|+++.+.+                      || ||||||++|+++|   ...        +     
T Consensus        26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~  105 (499)
T 2dhr_A           26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV  105 (499)
T ss_dssp             CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCT
T ss_pred             CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhh
Confidence            5678999999999988876443                      69 9999999999999   111        1     


Q ss_pred             -------cccccc----CceeEeeechhhhccCCc--------cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCC
Q 036857           62 -------KEFQSN----SRSILVIEDAVTSFESNA--------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHID  122 (170)
Q Consensus        62 -------~~v~~~----~p~il~iDEiD~~~~~~~--------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD  122 (170)
                             ..++..    .||++|+||+|.+...+.        .....+++++..|||...  +..+++++|||+++.||
T Consensus       106 g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~--~~~viviAatn~p~~LD  183 (499)
T 2dhr_A          106 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDILD  183 (499)
T ss_dssp             THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS--SCCCEEEECCSCGGGSC
T ss_pred             hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc--CccEEEEEecCChhhcC
Confidence                   111111    289999999999876322        224678899999999864  46789999999999999


Q ss_pred             CCCCCCCccceEEEcCCCCc
Q 036857          123 PVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       123 ~AllRpgR~d~~i~~~~p~~  142 (170)
                      ++++||||||+.|+++.|+.
T Consensus       184 ~aLlr~gRfdr~i~i~~Pd~  203 (499)
T 2dhr_A          184 PALLRPGRFDRQIAIDAPDV  203 (499)
T ss_dssp             TTTSSTTSSCCEEECCCCCH
T ss_pred             cccccccccceEEecCCCCH
Confidence            99999999999999999998

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=99.82  E-value=8.6e-21  Score=153.23  Aligned_cols=122  Identities=24%  Similarity=0.316  Sum_probs=91.9

Q ss_pred             CCCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---cccccccc--------
Q 036857           20 EHPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---DLDLKEFQ--------   65 (170)
Q Consensus        20 ~~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~~~l~~v~--------   65 (170)
                      .++.+|+++++.+.+++.+...+                      || ||||||++|+++|   ...+..+.        
T Consensus         5 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~   84 (268)
T 2r62_A            5 KPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMF   84 (268)
T ss_dssp             CCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSC
T ss_pred             CCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhh
Confidence            34557899999988887765432                      79 9999999999999   11111110        


Q ss_pred             ----------------ccCceeEeeechhhhccCCc---------cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCC
Q 036857           66 ----------------SNSRSILVIEDAVTSFESNA---------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDH  120 (170)
Q Consensus        66 ----------------~~~p~il~iDEiD~~~~~~~---------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~  120 (170)
                                      ...|+||||||+|.+...+.         .....++++++.+++.... ..++++|+|||.++.
T Consensus        85 ~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi~ttn~~~~  163 (268)
T 2r62_A           85 VGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSE-NAPVIVLAATNRPEI  163 (268)
T ss_dssp             SSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCS-CSCCEEEECBSCCTT
T ss_pred             cchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccC-CCCEEEEEecCCchh
Confidence                            01279999999999976321         1223567788888887542 346899999999999


Q ss_pred             CCCCCCCCCccceEEEcCCCCc
Q 036857          121 IDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       121 lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      +|++++|+|||+..++++.|+.
T Consensus       164 ld~~l~r~~Rf~~~i~i~~p~~  185 (268)
T 2r62_A          164 LDPALMRPGRFDRQVLVDKPDF  185 (268)
T ss_dssp             SCGGGGSSSSSCCCCBCCCCCT
T ss_pred             cCHhHcCCCCCCeEEEecCcCH
Confidence            9999999999999999999998

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=99.81  E-value=1.7e-20  Score=155.40  Aligned_cols=98  Identities=16%  Similarity=0.151  Sum_probs=67.6

Q ss_pred             cc-CCCcHHHHHHHHH---ccccc-----c---------------cc--------ccCceeEeeechhhhccCCc-----
Q 036857           43 WG-PYTGKSSLIAAMA---DLDLK-----E---------------FQ--------SNSRSILVIEDAVTSFESNA-----   85 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA---~~~l~-----~---------------v~--------~~~p~il~iDEiD~~~~~~~-----   85 (170)
                      || ||||||++|+++|   +..+.     .               ++        ...||||||||+|.+++..+     
T Consensus        42 ~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~  121 (293)
T 3t15_A           42 WGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQY  121 (293)
T ss_dssp             EECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC------------
T ss_pred             ECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccc
Confidence            79 9999999999999   11111     1               11        22499999999999987332     


Q ss_pred             --cchHHHHHHHHHhhchh---------ccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857           86 --YNSVALSALLKFVDGLW---------SSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus        86 --~~~~~~~~ll~~lDg~~---------~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                        ..+...+.|++.||+..         .....++++|+|||+++.+|+|++||||||..|++  |+.
T Consensus       122 ~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~--P~~  187 (293)
T 3t15_A          122 TVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR  187 (293)
T ss_dssp             --CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC--CCH
T ss_pred             cchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC--cCH
Confidence              22356688999998553         01135799999999999999999999999999985  555

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=99.80  E-value=1.2e-19  Score=154.97  Aligned_cols=125  Identities=20%  Similarity=0.179  Sum_probs=95.5

Q ss_pred             cCCCCCCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---c-----cccccc
Q 036857           16 SNKFEHPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---D-----LDLKEF   64 (170)
Q Consensus        16 ~~~~~~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~-----~~l~~v   64 (170)
                      .+...++.+|+++++...+++.+...+                      || ||||||++|+++|   .     ++...+
T Consensus       105 ~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l  184 (389)
T 3vfd_A          105 IVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASL  184 (389)
T ss_dssp             TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC
T ss_pred             hhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHh
Confidence            344667889999999999999886433                      79 9999999999999   1     111111


Q ss_pred             cc-------------------cCceeEeeechhhhccCC-----ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCC
Q 036857           65 QS-------------------NSRSILVIEDAVTSFESN-----AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDH  120 (170)
Q Consensus        65 ~~-------------------~~p~il~iDEiD~~~~~~-----~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~  120 (170)
                      ..                   ..|+||||||+|.++..+     ....+..+.++..+++.....+.+++||+|||+++.
T Consensus       185 ~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~  264 (389)
T 3vfd_A          185 TSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQE  264 (389)
T ss_dssp             -------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGG
T ss_pred             hccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchh
Confidence            11                   117999999999997632     234667888999999987644567999999999999


Q ss_pred             CCCCCCCCCccceEEEcCCCCc
Q 036857          121 IDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       121 lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      +|++++|  ||+..++++.|+.
T Consensus       265 l~~~l~~--R~~~~i~i~~p~~  284 (389)
T 3vfd_A          265 LDEAVLR--RFIKRVYVSLPNE  284 (389)
T ss_dssp             CCHHHHT--TCCEEEECCCCCH
T ss_pred             cCHHHHc--CcceEEEcCCcCH
Confidence            9999999  9999999999998

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=99.80  E-value=2.7e-19  Score=151.69  Aligned_cols=122  Identities=18%  Similarity=0.202  Sum_probs=94.7

Q ss_pred             CCCCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---c-----cccccccc-
Q 036857           19 FEHPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---D-----LDLKEFQS-   66 (170)
Q Consensus        19 ~~~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~-----~~l~~v~~-   66 (170)
                      ..++.+|+++++.+.+++.+...+                      || ||||||++|+++|   .     ++...+.. 
T Consensus        77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~  156 (357)
T 3d8b_A           77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK  156 (357)
T ss_dssp             CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred             CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence            456778999999999998875433                      79 9999999999999   1     12222211 


Q ss_pred             ------------------cCceeEeeechhhhccCC-----ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCC
Q 036857           67 ------------------NSRSILVIEDAVTSFESN-----AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDP  123 (170)
Q Consensus        67 ------------------~~p~il~iDEiD~~~~~~-----~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~  123 (170)
                                        ..|+||||||+|.+...+     ....+.+++++..+++.......+++||+|||+++.+|+
T Consensus       157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~  236 (357)
T 3d8b_A          157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDE  236 (357)
T ss_dssp             STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCH
T ss_pred             ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCH
Confidence                              118999999999998632     234567888999999986544568999999999999999


Q ss_pred             CCCCCCccceEEEcCCCCc
Q 036857          124 VPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       124 AllRpgR~d~~i~~~~p~~  142 (170)
                      +++|  ||+..++++.|+.
T Consensus       237 ~l~~--Rf~~~i~i~~p~~  253 (357)
T 3d8b_A          237 AARR--RLVKRLYIPLPEA  253 (357)
T ss_dssp             HHHT--TCCEEEECCCCCH
T ss_pred             HHHh--hCceEEEeCCcCH
Confidence            9999  9999999999998

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=99.77  E-value=8.7e-19  Score=143.37  Aligned_cols=122  Identities=21%  Similarity=0.230  Sum_probs=93.6

Q ss_pred             CCCCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---c-----cccccccc-
Q 036857           19 FEHPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---D-----LDLKEFQS-   66 (170)
Q Consensus        19 ~~~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~-----~~l~~v~~-   66 (170)
                      ..++.+|+++++.+..++.+...+                      || ||||||++|+++|   .     ++...+.. 
T Consensus        14 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~   93 (297)
T 3b9p_A           14 GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK   93 (297)
T ss_dssp             CSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS
T ss_pred             CCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc
Confidence            456789999999999998876432                      69 9999999999999   1     11111111 


Q ss_pred             ------------------cCceeEeeechhhhccCCc-----cchHHHHHHHHHhhchhccC-CCCeEEEEeCCCCCCCC
Q 036857           67 ------------------NSRSILVIEDAVTSFESNA-----YNSVALSALLKFVDGLWSSS-GDGRILVMTTDYKDHID  122 (170)
Q Consensus        67 ------------------~~p~il~iDEiD~~~~~~~-----~~~~~~~~ll~~lDg~~~~~-~~~~~vi~tTN~~~~lD  122 (170)
                                        ..|+||||||+|.+...+.     ......+.++..+|+..... +..+++|+|||+++.+|
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~  173 (297)
T 3b9p_A           94 YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELD  173 (297)
T ss_dssp             SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBC
T ss_pred             ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCC
Confidence                              1289999999999987432     23566788999999875421 24689999999999999


Q ss_pred             CCCCCCCccceEEEcCCCCc
Q 036857          123 PVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       123 ~AllRpgR~d~~i~~~~p~~  142 (170)
                      ++++|  ||+..+++++|+.
T Consensus       174 ~~l~~--R~~~~i~~~~p~~  191 (297)
T 3b9p_A          174 EAALR--RFTKRVYVSLPDE  191 (297)
T ss_dssp             HHHHH--HCCEEEECCCCCH
T ss_pred             HHHHh--hCCeEEEeCCcCH
Confidence            99998  9999999999998

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=99.77  E-value=1e-18  Score=142.63  Aligned_cols=123  Identities=20%  Similarity=0.270  Sum_probs=94.9

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---ccccc---------
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---DLDLK---------   62 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~~~l~---------   62 (170)
                      ...++.+|+++++.+++++++....                      || ||||||++++++|   ...+.         
T Consensus        32 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~  111 (278)
T 1iy2_A           32 TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE  111 (278)
T ss_dssp             CCCCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred             cCCCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence            3346678999999999987765432                      69 9999999999999   11111         


Q ss_pred             -----------cccc----cCceeEeeechhhhccCC--------ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC
Q 036857           63 -----------EFQS----NSRSILVIEDAVTSFESN--------AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD  119 (170)
Q Consensus        63 -----------~v~~----~~p~il~iDEiD~~~~~~--------~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~  119 (170)
                                 .++.    ..|+++++||+|.+....        ......++++++.++|...  +..++++++||+++
T Consensus       112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~--~~~~i~~a~t~~p~  189 (278)
T 1iy2_A          112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPD  189 (278)
T ss_dssp             STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT--TCCEEEEEEESCTT
T ss_pred             HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC--CCCEEEEEecCCch
Confidence                       1111    127999999999887532        1224567788888998754  45689999999999


Q ss_pred             CCCCCCCCCCccceEEEcCCCCc
Q 036857          120 HIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       120 ~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      .+|++++|+|||+..|+++.|+.
T Consensus       190 ~ld~~l~r~~rf~~~i~i~~p~~  212 (278)
T 1iy2_A          190 ILDPALLRPGRFDRQIAIDAPDV  212 (278)
T ss_dssp             SSCHHHHSTTSSCCEEECCCCCH
T ss_pred             hCCHhHcCCCcCCeEEEeCCcCH
Confidence            99999999999999999999998

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=99.71  E-value=1.5e-18  Score=151.50  Aligned_cols=120  Identities=11%  Similarity=0.032  Sum_probs=82.7

Q ss_pred             CCcccccCChhhHHHhhcCc---------------cc-CCCcHHHHHHHHH---c--cccccc-----------------
Q 036857           23 ATSNTIATDFDMNKALVDDY---------------WG-PYTGKSSLIAAMA---D--LDLKEF-----------------   64 (170)
Q Consensus        23 ~~~~~v~~~~~~k~~l~~~~---------------~G-PGtGKT~la~aiA---~--~~l~~v-----------------   64 (170)
                      ..|+++++.++.++.+...+               || ||||||++|+++|   .  ..+..+                 
T Consensus        34 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (456)
T 2c9o_A           34 QAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLM  113 (456)
T ss_dssp             SEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHHHH
T ss_pred             hchhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHHHH
Confidence            35899999999988654433               79 9999999999999   2  222111                 


Q ss_pred             ---------cccCceeEeeechhhhccCCccch------------------------HHHHHHHHHhhchhccCCCCeEE
Q 036857           65 ---------QSNSRSILVIEDAVTSFESNAYNS------------------------VALSALLKFVDGLWSSSGDGRIL  111 (170)
Q Consensus        65 ---------~~~~p~il~iDEiD~~~~~~~~~~------------------------~~~~~ll~~lDg~~~~~~~~~~v  111 (170)
                               ....|||||+||+|+++..++...                        +..++++..++......++.++|
T Consensus       114 ~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~i  193 (456)
T 2c9o_A          114 ENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYI  193 (456)
T ss_dssp             HHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTTCCTTEEEEE
T ss_pred             HHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhccCCCCCEEEE
Confidence                     122399999999999997443221                        11223555555322222344566


Q ss_pred             EEeCCCCCCCCCCCCCCCccce--EEEcCCCCc
Q 036857          112 VMTTDYKDHIDPVPLRPSCMDM--HFHLSSHTF  142 (170)
Q Consensus       112 i~tTN~~~~lD~AllRpgR~d~--~i~~~~p~~  142 (170)
                      ++|||+++.+|+|+.||||||.  .+.++.|+.
T Consensus       194 ~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~  226 (456)
T 2c9o_A          194 EANSGAVKRQGRCDTYATEFDLEAEEYVPLPKG  226 (456)
T ss_dssp             ETTTCCEEEEEEETTSCCTTSCSSSSEECCCCS
T ss_pred             EcCCCCcccCChhhcCCcccCcceeEecCCCch
Confidence            6899999999999999999999  667777754

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=99.62  E-value=4.2e-17  Score=142.98  Aligned_cols=97  Identities=11%  Similarity=0.133  Sum_probs=26.0

Q ss_pred             cc-CCCcHHHHHHHHH---cc-----ccccccc------cC-----------ceeEeeechhhhcc--CCccchHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA---DL-----DLKEFQS------NS-----------RSILVIEDAVTSFE--SNAYNSVALSAL   94 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA---~~-----~l~~v~~------~~-----------p~il~iDEiD~~~~--~~~~~~~~~~~l   94 (170)
                      +| ||||||++|+++|   ..     +.+.+..      +.           ..++++||+|.+..  .+....+.+++|
T Consensus        56 ~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~L  135 (444)
T 1g41_A           56 IGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDAL  135 (444)
T ss_dssp             ECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC---------------
T ss_pred             EcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHH
Confidence            69 9999999999999   11     1111111      11           44567899988765  334557889999


Q ss_pred             HHHhhchhccCCCCeEEEEe-CCCCCCCCCCCCCCCccceEEEcCCCCcc
Q 036857           95 LKFVDGLWSSSGDGRILVMT-TDYKDHIDPVPLRPSCMDMHFHLSSHTFR  143 (170)
Q Consensus        95 l~~lDg~~~~~~~~~~vi~t-TN~~~~lD~AllRpgR~d~~i~~~~p~~~  143 (170)
                      ++.|||+...  .++  +++ ||+++.||+||+||||||++|++++|+..
T Consensus       136 L~~~dg~~~~--~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~  181 (444)
T 1g41_A          136 LPPAKNQWGE--VEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGV  181 (444)
T ss_dssp             --------------------------------------------------
T ss_pred             HHHhhccccc--ccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCc
Confidence            9999999752  233  455 99999999999999999999999999984

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=99.58  E-value=7.1e-15  Score=122.09  Aligned_cols=121  Identities=14%  Similarity=0.086  Sum_probs=86.7

Q ss_pred             CCcccCCCCCCCCcccccCChhhHHHhhcCc---------------cc-CCCcHHHHHHHHH---ccccccccc------
Q 036857           12 SYWNSNKFEHPATSNTIATDFDMNKALVDDY---------------WG-PYTGKSSLIAAMA---DLDLKEFQS------   66 (170)
Q Consensus        12 ~~w~~~~~~~p~~~~~v~~~~~~k~~l~~~~---------------~G-PGtGKT~la~aiA---~~~l~~v~~------   66 (170)
                      ..|.  ....|.+|+++++....++++...+               +| ||||||++|+++|   ...+..+..      
T Consensus        17 ~~~~--~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~   94 (338)
T 3pfi_A           17 ETYE--TSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKS   94 (338)
T ss_dssp             --------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSH
T ss_pred             hhhh--hccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccch
Confidence            3454  4678899999999999888765544               69 9999999999999   222211111      


Q ss_pred             ----------cCceeEeeechhhhccCCccchHHHHHHHHHhhchhcc--------------CCCCeEEEEeCCCCCCCC
Q 036857           67 ----------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSS--------------SGDGRILVMTTDYKDHID  122 (170)
Q Consensus        67 ----------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~--------------~~~~~~vi~tTN~~~~lD  122 (170)
                                ..+++|||||+|.+.      ......|+..++.....              ...++.+|+|||+...++
T Consensus        95 ~~~~~~~~~~~~~~vl~lDEi~~l~------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~  168 (338)
T 3pfi_A           95 GDLAAILTNLSEGDILFIDEIHRLS------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLS  168 (338)
T ss_dssp             HHHHHHHHTCCTTCEEEEETGGGCC------HHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSC
T ss_pred             hHHHHHHHhccCCCEEEEechhhcC------HHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccC
Confidence                      128999999999874      34456666666543200              001478999999999999


Q ss_pred             CCCCCCCccceEEEcCCCCc
Q 036857          123 PVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       123 ~AllRpgR~d~~i~~~~p~~  142 (170)
                      +++++  ||+..++++.|+.
T Consensus       169 ~~L~~--R~~~~i~l~~~~~  186 (338)
T 3pfi_A          169 NPLRD--RFGMQFRLEFYKD  186 (338)
T ss_dssp             HHHHT--TCSEEEECCCCCH
T ss_pred             HHHHh--hcCEEeeCCCcCH
Confidence            99997  9999999999987

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=99.53  E-value=9.5e-15  Score=120.81  Aligned_cols=115  Identities=17%  Similarity=0.114  Sum_probs=87.9

Q ss_pred             cCCCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc--cccccc---------------
Q 036857           16 SNKFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL--DLKEFQ---------------   65 (170)
Q Consensus        16 ~~~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~--~l~~v~---------------   65 (170)
                      ++....|.+|++++++++.++.+...+           +| ||||||++|+++| .+  ++..+.               
T Consensus        16 ~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~~~~i~~~~~~   95 (324)
T 3u61_B           16 LEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTN   95 (324)
T ss_dssp             HHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCCHHHHHTHHHH
T ss_pred             HHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccCHHHHHHHHHH
Confidence            344788999999999999998887655           48 9999999999999 11  111110               


Q ss_pred             --c-----cCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcC
Q 036857           66 --S-----NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLS  138 (170)
Q Consensus        66 --~-----~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~  138 (170)
                        .     ..+.||||||+|.+.+     ....+.|+..++...    .++.+|+|||.++.+++++.+  |+. .++|+
T Consensus        96 ~~~~~~~~~~~~vliiDEi~~l~~-----~~~~~~L~~~le~~~----~~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~  163 (324)
T 3u61_B           96 FASAASFDGRQKVIVIDEFDRSGL-----AESQRHLRSFMEAYS----SNCSIIITANNIDGIIKPLQS--RCR-VITFG  163 (324)
T ss_dssp             HHHBCCCSSCEEEEEEESCCCGGG-----HHHHHHHHHHHHHHG----GGCEEEEEESSGGGSCTTHHH--HSE-EEECC
T ss_pred             HHhhcccCCCCeEEEEECCcccCc-----HHHHHHHHHHHHhCC----CCcEEEEEeCCccccCHHHHh--hCc-EEEeC
Confidence              0     1278999999998851     234566777777653    478899999999999999997  775 69999


Q ss_pred             CCCc
Q 036857          139 SHTF  142 (170)
Q Consensus       139 ~p~~  142 (170)
                      .|+.
T Consensus       164 ~~~~  167 (324)
T 3u61_B          164 QPTD  167 (324)
T ss_dssp             CCCH
T ss_pred             CCCH
Confidence            9997

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=99.53  E-value=1.2e-14  Score=117.73  Aligned_cols=118  Identities=20%  Similarity=0.282  Sum_probs=78.1

Q ss_pred             cc-CCCcHHHHHHHHH---ccccccc---------------------c----ccCceeEeeechhhhccCC----ccchH
Q 036857           43 WG-PYTGKSSLIAAMA---DLDLKEF---------------------Q----SNSRSILVIEDAVTSFESN----AYNSV   89 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA---~~~l~~v---------------------~----~~~p~il~iDEiD~~~~~~----~~~~~   89 (170)
                      || ||||||++|+++|   ...+..+                     +    ...+++|||||+|.+++..    .....
T Consensus        70 ~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~  149 (272)
T 1d2n_A           70 EGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNL  149 (272)
T ss_dssp             ECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHH
T ss_pred             ECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHH
Confidence            79 9999999999999   2221111                     0    0128999999999997622    22344


Q ss_pred             HHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCcchHHHHHHHHHhhcCCCCHHHHH
Q 036857           90 ALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTFRHYLFEKIEERLAKIQATPAEVP  165 (170)
Q Consensus        90 ~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~~~~l~~~~~~~~~~~~~s~a~i~  165 (170)
                      .+..|...+++.... +.++++|+|||.++.+|++.++ +||+..|+++.++.+..+...+..   ...++++++.
T Consensus       150 ~l~~L~~~~~~~~~~-~~~~~ii~ttn~~~~l~~~~l~-~rf~~~i~~p~l~~r~~i~~i~~~---~~~~~~~~~~  220 (272)
T 1d2n_A          150 VLQALLVLLKKAPPQ-GRKLLIIGTTSRKDVLQEMEML-NAFSTTIHVPNIATGEQLLEALEL---LGNFKDKERT  220 (272)
T ss_dssp             HHHHHHHHTTCCCST-TCEEEEEEEESCHHHHHHTTCT-TTSSEEEECCCEEEHHHHHHHHHH---HTCSCHHHHH
T ss_pred             HHHHHHHHhcCccCC-CCCEEEEEecCChhhcchhhhh-cccceEEcCCCccHHHHHHHHHHh---cCCCCHHHHH
Confidence            555666666665432 4578899999999999985443 599999999776665554443332   2345555543

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=99.53  E-value=1.1e-14  Score=119.07  Aligned_cols=110  Identities=17%  Similarity=0.265  Sum_probs=83.0

Q ss_pred             cccCChhhHHHhhcC-------------------------ccc-CCCcHHHHHHHHH-cc---------ccccccc----
Q 036857           27 TIATDFDMNKALVDD-------------------------YWG-PYTGKSSLIAAMA-DL---------DLKEFQS----   66 (170)
Q Consensus        27 ~v~~~~~~k~~l~~~-------------------------~~G-PGtGKT~la~aiA-~~---------~l~~v~~----   66 (170)
                      ++++.+.+|+.+...                         +|| ||||||++|+++| .+         .+..+..    
T Consensus        32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~  111 (309)
T 3syl_A           32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV  111 (309)
T ss_dssp             HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred             HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence            689999999887632                         179 9999999999999 11         1111111    


Q ss_pred             -----------------cCceeEeeechhhhccCC---ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC-----CC
Q 036857           67 -----------------NSRSILVIEDAVTSFESN---AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD-----HI  121 (170)
Q Consensus        67 -----------------~~p~il~iDEiD~~~~~~---~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~-----~l  121 (170)
                                       ..++||||||+|.++..+   .......+.|++.++..    ..++++|+|||..+     .+
T Consensus       112 ~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~----~~~~~~i~~~~~~~~~~~~~~  187 (309)
T 3syl_A          112 GQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN----RDDLVVILAGYADRMENFFQS  187 (309)
T ss_dssp             CSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC----TTTCEEEEEECHHHHHHHHHH
T ss_pred             hhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC----CCCEEEEEeCChHHHHHHHhh
Confidence                             118899999999998633   23566778888888864    35788999998654     36


Q ss_pred             CCCCCCCCccceEEEcCCCCc
Q 036857          122 DPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       122 D~AllRpgR~d~~i~~~~p~~  142 (170)
                      +|++++  ||+.+|+|+.|+.
T Consensus       188 ~~~l~~--R~~~~i~~~~~~~  206 (309)
T 3syl_A          188 NPGFRS--RIAHHIEFPDYSD  206 (309)
T ss_dssp             STTHHH--HEEEEEEECCCCH
T ss_pred             CHHHHH--hCCeEEEcCCcCH
Confidence            899997  9999999999998

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=99.52  E-value=1.2e-13  Score=113.62  Aligned_cols=116  Identities=19%  Similarity=0.157  Sum_probs=84.1

Q ss_pred             CCCCCCcccccCChhhHHHhhcCc---------------cc-CCCcHHHHHHHHH---ccccc--------------ccc
Q 036857           19 FEHPATSNTIATDFDMNKALVDDY---------------WG-PYTGKSSLIAAMA---DLDLK--------------EFQ   65 (170)
Q Consensus        19 ~~~p~~~~~v~~~~~~k~~l~~~~---------------~G-PGtGKT~la~aiA---~~~l~--------------~v~   65 (170)
                      ...|.+|+++++....++.+...+               +| ||||||++|+++|   ...+.              ...
T Consensus         5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~l~~~l   84 (324)
T 1hqc_A            5 ALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAIL   84 (324)
T ss_dssp             CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHHHHHHHH
T ss_pred             ccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChHHHHHHH
Confidence            567889999999998877654332               79 9999999999999   11111              111


Q ss_pred             c---cCceeEeeechhhhccCCccchHHHHHHHHHhhchhcc--------------CCCCeEEEEeCCCCCCCCCCCCCC
Q 036857           66 S---NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSS--------------SGDGRILVMTTDYKDHIDPVPLRP  128 (170)
Q Consensus        66 ~---~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~--------------~~~~~~vi~tTN~~~~lD~AllRp  128 (170)
                      .   ..+++|||||+|.+..      .....++..++.....              ...++.+|+|||..+.+++++.+ 
T Consensus        85 ~~~~~~~~~l~lDEi~~l~~------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~-  157 (324)
T 1hqc_A           85 ANSLEEGDILFIDEIHRLSR------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS-  157 (324)
T ss_dssp             TTTCCTTCEEEETTTTSCCH------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT-
T ss_pred             HHhccCCCEEEEECCccccc------chHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHh-
Confidence            1   2388999999998743      3345556665543100              01357899999999999999997 


Q ss_pred             CccceEEEcCCCCc
Q 036857          129 SCMDMHFHLSSHTF  142 (170)
Q Consensus       129 gR~d~~i~~~~p~~  142 (170)
                       ||+..++++.|+.
T Consensus       158 -R~~~~i~l~~~~~  170 (324)
T 1hqc_A          158 -RFGIVEHLEYYTP  170 (324)
T ss_dssp             -TCSCEEECCCCCH
T ss_pred             -cccEEEecCCCCH
Confidence             9999999999987

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=99.49  E-value=1.3e-13  Score=105.50  Aligned_cols=113  Identities=18%  Similarity=0.174  Sum_probs=84.8

Q ss_pred             CCCCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-c-------ccccccc------------
Q 036857           17 NKFEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-D-------LDLKEFQ------------   65 (170)
Q Consensus        17 ~~~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~-------~~l~~v~------------   65 (170)
                      .....|..|+++++.+...+.+...+          +| ||||||++|++++ .       ..+..+.            
T Consensus         8 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (226)
T 2chg_A            8 VEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRH   87 (226)
T ss_dssp             HHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHH
T ss_pred             HHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHH
Confidence            34678899999999999888876544          79 9999999999998 1       0011110            


Q ss_pred             ------------ccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccce
Q 036857           66 ------------SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDM  133 (170)
Q Consensus        66 ------------~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~  133 (170)
                                  ...+.+|+|||+|.+..      .....++..++..    ..++.+|+|||.++.+++++.+  |+. 
T Consensus        88 ~~~~~~~~~~~~~~~~~vliiDe~~~l~~------~~~~~l~~~l~~~----~~~~~~i~~~~~~~~~~~~l~~--r~~-  154 (226)
T 2chg_A           88 KIKEFARTAPIGGAPFKIIFLDEADALTA------DAQAALRRTMEMY----SKSCRFILSCNYVSRIIEPIQS--RCA-  154 (226)
T ss_dssp             HHHHHHTSCCSTTCSCEEEEEETGGGSCH------HHHHHHHHHHHHT----TTTEEEEEEESCGGGSCHHHHT--TSE-
T ss_pred             HHHHHhcccCCCccCceEEEEeChhhcCH------HHHHHHHHHHHhc----CCCCeEEEEeCChhhcCHHHHH--hCc-
Confidence                        12388999999998743      2345566666654    3578899999999999999987  777 


Q ss_pred             EEEcCCCCc
Q 036857          134 HFHLSSHTF  142 (170)
Q Consensus       134 ~i~~~~p~~  142 (170)
                      .++++.|+.
T Consensus       155 ~i~~~~~~~  163 (226)
T 2chg_A          155 VFRFKPVPK  163 (226)
T ss_dssp             EEECCCCCH
T ss_pred             eeecCCCCH
Confidence            889988886

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=99.44  E-value=1.1e-13  Score=114.85  Aligned_cols=115  Identities=17%  Similarity=0.157  Sum_probs=81.6

Q ss_pred             CCCCCcccccCChhhHHHhhcCc--------cc-CCCcHHHHHHHHH---cccccccccc--------------------
Q 036857           20 EHPATSNTIATDFDMNKALVDDY--------WG-PYTGKSSLIAAMA---DLDLKEFQSN--------------------   67 (170)
Q Consensus        20 ~~p~~~~~v~~~~~~k~~l~~~~--------~G-PGtGKT~la~aiA---~~~l~~v~~~--------------------   67 (170)
                      ..|..++++++.++.++.+...+        || ||||||++|+++|   ...+..+...                    
T Consensus        21 ~~~~~~~~i~g~~~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~  100 (331)
T 2r44_A           21 VIDEVGKVVVGQKYMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGN  100 (331)
T ss_dssp             HHHHHTTTCCSCHHHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTE
T ss_pred             HHHHhccceeCcHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCc
Confidence            44556788899998888776554        79 9999999999999   1111111110                    


Q ss_pred             -----C---ceeEeeechhhhccCCccchHHHHHHHHHhhch-------hccCCCCeEEEEeCCCCC-----CCCCCCCC
Q 036857           68 -----S---RSILVIEDAVTSFESNAYNSVALSALLKFVDGL-------WSSSGDGRILVMTTDYKD-----HIDPVPLR  127 (170)
Q Consensus        68 -----~---p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~-------~~~~~~~~~vi~tTN~~~-----~lD~AllR  127 (170)
                           .   .+|+|+||+|.+.      ....+.+++.|+.-       ....+..+++++|+|..+     .+++++++
T Consensus       101 ~~~~~g~l~~~vl~iDEi~~~~------~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~  174 (331)
T 2r44_A          101 FEVKKGPVFSNFILADEVNRSP------AKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD  174 (331)
T ss_dssp             EEEEECTTCSSEEEEETGGGSC------HHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHT
T ss_pred             eEeccCcccccEEEEEccccCC------HHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHh
Confidence                 0   2799999999763      34456666666532       112245678888888554     38999997


Q ss_pred             CCccceEEEcCCCCc
Q 036857          128 PSCMDMHFHLSSHTF  142 (170)
Q Consensus       128 pgR~d~~i~~~~p~~  142 (170)
                        ||+.++++++|+.
T Consensus       175 --Rf~~~i~i~~p~~  187 (331)
T 2r44_A          175 --RFMMKIHLTYLDK  187 (331)
T ss_dssp             --TSSEEEECCCCCH
T ss_pred             --heeEEEEcCCCCH
Confidence              9999999999987

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=99.41  E-value=5.5e-13  Score=108.37  Aligned_cols=98  Identities=15%  Similarity=0.229  Sum_probs=69.1

Q ss_pred             cc-CCCcHHHHHHHHH---c-----ccccccc-----------------c---------cCceeEeeechhhhccCCc--
Q 036857           43 WG-PYTGKSSLIAAMA---D-----LDLKEFQ-----------------S---------NSRSILVIEDAVTSFESNA--   85 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA---~-----~~l~~v~-----------------~---------~~p~il~iDEiD~~~~~~~--   85 (170)
                      || ||||||++|+++|   .     ++...+.                 .         ..++||||||+|.+.....  
T Consensus        56 ~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~  135 (310)
T 1ofh_A           56 IGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYS  135 (310)
T ss_dssp             ECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCC
T ss_pred             ECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccccc
Confidence            79 9999999999999   1     1111110                 0         1278999999999986331  


Q ss_pred             --cc--hHHHHHHHHHhhchhcc------CCCCeEEEEe----CCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857           86 --YN--SVALSALLKFVDGLWSS------SGDGRILVMT----TDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus        86 --~~--~~~~~~ll~~lDg~~~~------~~~~~~vi~t----TN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                        ..  ....+.|+..+++....      ...++++|+|    ++.+..+++++++  ||+..|+|+.|+.
T Consensus       136 ~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~  204 (310)
T 1ofh_A          136 GADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSA  204 (310)
T ss_dssp             SSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCH
T ss_pred             ccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCH
Confidence              11  12356788888864210      1246788888    5688899999995  9999999999998

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=99.41  E-value=2.1e-13  Score=102.08  Aligned_cols=115  Identities=13%  Similarity=0.131  Sum_probs=77.3

Q ss_pred             CCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-cc----------ccc-------ccc----
Q 036857           19 FEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-DL----------DLK-------EFQ----   65 (170)
Q Consensus        19 ~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~~----------~l~-------~v~----   65 (170)
                      ...|..|+++++.++..+++...+          +| ||||||++|++++ .+          +..       ...    
T Consensus        15 ~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (195)
T 1jbk_A           15 RAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAK   94 (195)
T ss_dssp             HHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTC
T ss_pred             HHhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCC
Confidence            345778999999888877776544          79 9999999999999 11          111       000    


Q ss_pred             ------------------ccCceeEeeechhhhccCCcc--chHHHHHHHHHhhchhccCCCCeEEEEeCCCCC-----C
Q 036857           66 ------------------SNSRSILVIEDAVTSFESNAY--NSVALSALLKFVDGLWSSSGDGRILVMTTDYKD-----H  120 (170)
Q Consensus        66 ------------------~~~p~il~iDEiD~~~~~~~~--~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~-----~  120 (170)
                                        ...++||+|||+|.+...+..  .....+.+...++      ..++.+|+|||.++     .
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~------~~~~~~i~~~~~~~~~~~~~  168 (195)
T 1jbk_A           95 YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA------RGELHCVGATTLDEYRQYIE  168 (195)
T ss_dssp             SHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH------TTSCCEEEEECHHHHHHHTT
T ss_pred             ccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc------cCCeEEEEeCCHHHHHHHHh
Confidence                              011779999999998752210  1111222222222      24678888888776     7


Q ss_pred             CCCCCCCCCccceEEEcCCCCc
Q 036857          121 IDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       121 lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      +|+++.|  ||+ .|+++.|+.
T Consensus       169 ~~~~l~~--r~~-~i~~~~p~~  187 (195)
T 1jbk_A          169 KDAALER--RFQ-KVFVAEPSV  187 (195)
T ss_dssp             TCHHHHT--TEE-EEECCCCCH
T ss_pred             cCHHHHH--Hhc-eeecCCCCH
Confidence            8999998  998 699999986

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=99.41  E-value=7.9e-13  Score=107.67  Aligned_cols=115  Identities=17%  Similarity=0.168  Sum_probs=86.6

Q ss_pred             ccCCCCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-c------------cccc------c-
Q 036857           15 NSNKFEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-D------------LDLK------E-   63 (170)
Q Consensus        15 ~~~~~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~------------~~l~------~-   63 (170)
                      .++....|.+|+++++.+..++.+...+          || ||||||++|+++| .            ++.+      . 
T Consensus         6 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~   85 (319)
T 2chq_A            6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVV   85 (319)
T ss_dssp             CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTS
T ss_pred             cHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHH
Confidence            3456889999999999999999988776          79 9999999999998 1            0100      0 


Q ss_pred             ------cc------ccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCcc
Q 036857           64 ------FQ------SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCM  131 (170)
Q Consensus        64 ------v~------~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~  131 (170)
                            ..      ...+.|+++||+|.+..      ...+.|+..++..    +.++.+|++||.++.+++++.+  |+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------~~~~~L~~~le~~----~~~~~~i~~~~~~~~l~~~l~s--r~  153 (319)
T 2chq_A           86 RHKIKEFARTAPIGGAPFKIIFLDEADALTA------DAQAALRRTMEMY----SKSCRFILSCNYVSRIIEPIQS--RC  153 (319)
T ss_dssp             SHHHHHHHHSCCSSSCCCEEEEEETGGGSCH------HHHHTTGGGTSSS----SSSEEEEEEESCGGGSCHHHHT--TC
T ss_pred             HHHHHHHHhcCCCCCCCceEEEEeCCCcCCH------HHHHHHHHHHHhc----CCCCeEEEEeCChhhcchHHHh--hC
Confidence                  00      12278999999998743      2344455555543    4578899999999999999987  66


Q ss_pred             ceEEEcCCCCc
Q 036857          132 DMHFHLSSHTF  142 (170)
Q Consensus       132 d~~i~~~~p~~  142 (170)
                      . .++|+.|+.
T Consensus       154 ~-~i~~~~~~~  163 (319)
T 2chq_A          154 A-VFRFKPVPK  163 (319)
T ss_dssp             E-EEECCCCCH
T ss_pred             e-EEEecCCCH
Confidence            5 799988886

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=99.41  E-value=1.1e-12  Score=109.60  Aligned_cols=61  Identities=11%  Similarity=0.015  Sum_probs=44.2

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeC-----------CCCCCCCCCCCCCCccceEEEc
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTT-----------DYKDHIDPVPLRPSCMDMHFHL  137 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tT-----------N~~~~lD~AllRpgR~d~~i~~  137 (170)
                      |+||||||+|.+.      ....+.|+..++..    ...+++++|+           |.++.+|+++++  ||.. ++|
T Consensus       190 ~~vl~IDEi~~l~------~~~~~~L~~~le~~----~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~  256 (368)
T 3uk6_A          190 PGVLFIDEVHMLD------IESFSFLNRALESD----MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VST  256 (368)
T ss_dssp             BCEEEEESGGGSB------HHHHHHHHHHTTCT----TCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EEE
T ss_pred             CceEEEhhccccC------hHHHHHHHHHhhCc----CCCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EEe
Confidence            5799999999873      34556677766553    2345555554           358899999998  8877 799


Q ss_pred             CCCCc
Q 036857          138 SSHTF  142 (170)
Q Consensus       138 ~~p~~  142 (170)
                      +.|+.
T Consensus       257 ~~~~~  261 (368)
T 3uk6_A          257 TPYSE  261 (368)
T ss_dssp             CCCCH
T ss_pred             cCCCH
Confidence            99877

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=99.40  E-value=1.2e-13  Score=123.25  Aligned_cols=113  Identities=16%  Similarity=0.159  Sum_probs=76.9

Q ss_pred             cccccCChhhHHHhhcCc----------------cc-CCCcHHHHHHHHH--------ccccccccc-------------
Q 036857           25 SNTIATDFDMNKALVDDY----------------WG-PYTGKSSLIAAMA--------DLDLKEFQS-------------   66 (170)
Q Consensus        25 ~~~v~~~~~~k~~l~~~~----------------~G-PGtGKT~la~aiA--------~~~l~~v~~-------------   66 (170)
                      .+++.+..++++.+...+                +| ||||||++|+++|        .+++..+..             
T Consensus        80 ~~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig  159 (543)
T 3m6a_A           80 DEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVG  159 (543)
T ss_dssp             HHHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC----------------
T ss_pred             HHHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhc
Confidence            455888888888774332                69 9999999999999        111111100             


Q ss_pred             -----------c---CceeEeeechhhhccCCccchHHHHHHHHHhhchhccC-----------CCCeEEEEeCCCCCCC
Q 036857           67 -----------N---SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSS-----------GDGRILVMTTDYKDHI  121 (170)
Q Consensus        67 -----------~---~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~-----------~~~~~vi~tTN~~~~l  121 (170)
                                 .   ...|+|+||+|.+....  .....+.|++.||......           ..++++|+|||+++.+
T Consensus       160 ~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~--~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l  237 (543)
T 3m6a_A          160 AMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDF--RGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATI  237 (543)
T ss_dssp             ----CHHHHHHTTCSSSEEEEEEESSSCC-----------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTS
T ss_pred             cCchHHHHHHHHhhccCCEEEEhhhhhhhhhh--ccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccC
Confidence                       0   14499999999997632  2235677888887543110           1468999999999999


Q ss_pred             CCCCCCCCccceEEEcCCCCc
Q 036857          122 DPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       122 D~AllRpgR~d~~i~~~~p~~  142 (170)
                      |++|+|  ||+ .|+|+.|+.
T Consensus       238 ~~aL~~--R~~-vi~~~~~~~  255 (543)
T 3m6a_A          238 PGPLRD--RME-IINIAGYTE  255 (543)
T ss_dssp             CHHHHH--HEE-EEECCCCCH
T ss_pred             CHHHHh--hcc-eeeeCCCCH
Confidence            999998  996 689999988

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=99.40  E-value=5.9e-13  Score=110.27  Aligned_cols=116  Identities=20%  Similarity=0.152  Sum_probs=80.8

Q ss_pred             CCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-cccc-------------------------
Q 036857           19 FEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-DLDL-------------------------   61 (170)
Q Consensus        19 ~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~~~l-------------------------   61 (170)
                      ..+|.+|+++++.+..++.+....          || ||||||++|+++| .++-                         
T Consensus        17 ~~~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (350)
T 1g8p_A           17 TRPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLS   96 (350)
T ss_dssp             -CCCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSC
T ss_pred             CCCCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhc
Confidence            345668999999998877643222          79 9999999999999 1110                         


Q ss_pred             -------------------ccccc----------c------------CceeEeeechhhhccCCccchHHHHHHHHHhhc
Q 036857           62 -------------------KEFQS----------N------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDG  100 (170)
Q Consensus        62 -------------------~~v~~----------~------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg  100 (170)
                                         ..+..          .            .+++|||||+|.+..      ...+.|+..++.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~------~~~~~Ll~~le~  170 (350)
T 1g8p_A           97 TNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED------HIVDLLLDVAQS  170 (350)
T ss_dssp             CCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH------HHHHHHHHHHHH
T ss_pred             cccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH------HHHHHHHHHHhc
Confidence                               00110          0            167999999998743      345566666653


Q ss_pred             h----hc-----cCCCCeEEEEeCCCCC-CCCCCCCCCCccceEEEcCCCCc
Q 036857          101 L----WS-----SSGDGRILVMTTDYKD-HIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       101 ~----~~-----~~~~~~~vi~tTN~~~-~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      -    ..     ..+.++++|+|||..+ .+++++++  ||+.+++++.|+.
T Consensus       171 ~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~  220 (350)
T 1g8p_A          171 GENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRD  220 (350)
T ss_dssp             SEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCS
T ss_pred             CceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCc
Confidence            1    10     0023688999999755 89999998  9999999999965

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=99.40  E-value=2e-12  Score=99.64  Aligned_cols=112  Identities=21%  Similarity=0.254  Sum_probs=83.3

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc-------------------------
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL-------------------------   59 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~-------------------------   59 (170)
                      ....|..|+++++.+...+.+...+           +| ||||||+++++++ .+                         
T Consensus        15 ~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (250)
T 1njg_A           15 RKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRF   94 (250)
T ss_dssp             HHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCC
T ss_pred             hccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCC
Confidence            3677889999999998887775544           79 9999999999999 11                         


Q ss_pred             -ccccccc----------------------cCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857           60 -DLKEFQS----------------------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD  116 (170)
Q Consensus        60 -~l~~v~~----------------------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN  116 (170)
                       ++..+..                      ..+.+|+|||+|.+.      ....+.++..++..    +.++.+|++||
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~------~~~~~~l~~~l~~~----~~~~~~i~~t~  164 (250)
T 1njg_A           95 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------RHSFNALLKTLEEP----PEHVKFLLATT  164 (250)
T ss_dssp             SSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC------HHHHHHHHHHHHSC----CTTEEEEEEES
T ss_pred             cceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECccccc------HHHHHHHHHHHhcC----CCceEEEEEeC
Confidence             1111100                      016899999999862      34556677777654    45789999999


Q ss_pred             CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          117 YKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       117 ~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      .++.+++++.+  |+ ..++++.++.
T Consensus       165 ~~~~~~~~l~~--r~-~~i~l~~l~~  187 (250)
T 1njg_A          165 DPQKLPVTILS--RC-LQFHLKALDV  187 (250)
T ss_dssp             CGGGSCHHHHT--TS-EEEECCCCCH
T ss_pred             ChHhCCHHHHH--Hh-hhccCCCCCH
Confidence            99999999886  53 6888988887

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=99.39  E-value=8e-14  Score=104.59  Aligned_cols=114  Identities=12%  Similarity=0.124  Sum_probs=78.1

Q ss_pred             CCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-cc----------ccccccc----------
Q 036857           19 FEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-DL----------DLKEFQS----------   66 (170)
Q Consensus        19 ~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~~----------~l~~v~~----------   66 (170)
                      ...|..|+++++.+...+.+...+          || ||||||++|+++| .+          +...+..          
T Consensus        15 ~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (187)
T 2p65_A           15 LARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAK   94 (187)
T ss_dssp             HHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCC
T ss_pred             HHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCC
Confidence            345778999999888777766543          79 9999999999999 11          1111100          


Q ss_pred             -------------------cCceeEeeechhhhccCCc---cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC-----
Q 036857           67 -------------------NSRSILVIEDAVTSFESNA---YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD-----  119 (170)
Q Consensus        67 -------------------~~p~il~iDEiD~~~~~~~---~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~-----  119 (170)
                                         +.+++|+|||+|.+...+.   ......+.+...++      ...+++|+|||.++     
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~------~~~~~ii~~~~~~~~~~~~  168 (187)
T 2p65_A           95 YRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLA------RGELRCIGATTVSEYRQFI  168 (187)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHH------TTCSCEEEEECHHHHHHHT
T ss_pred             chhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHh------cCCeeEEEecCHHHHHHHH
Confidence                               0168999999999974221   11222333333332      24678899999765     


Q ss_pred             CCCCCCCCCCccceEEEcCCCC
Q 036857          120 HIDPVPLRPSCMDMHFHLSSHT  141 (170)
Q Consensus       120 ~lD~AllRpgR~d~~i~~~~p~  141 (170)
                      .+|+++.|  ||+. |+++.|+
T Consensus       169 ~~~~~l~~--R~~~-i~i~~p~  187 (187)
T 2p65_A          169 EKDKALER--RFQQ-ILVEQPS  187 (187)
T ss_dssp             TTCHHHHH--HEEE-EECCSCC
T ss_pred             hccHHHHH--hcCc-ccCCCCC
Confidence            68999998  9995 9999886

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=99.36  E-value=1.5e-12  Score=106.32  Aligned_cols=114  Identities=18%  Similarity=0.184  Sum_probs=85.0

Q ss_pred             cCCCCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-cc-------ccccc------------
Q 036857           16 SNKFEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-DL-------DLKEF------------   64 (170)
Q Consensus        16 ~~~~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~~-------~l~~v------------   64 (170)
                      ++....|.+|+++++.+..++.+...+          || ||||||++|+++| .+       .+..+            
T Consensus        15 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~   94 (327)
T 1iqp_A           15 WVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIR   94 (327)
T ss_dssp             HHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTH
T ss_pred             hhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHH
Confidence            334678999999999999998886554          79 9999999999999 10       01000            


Q ss_pred             ------------cccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccc
Q 036857           65 ------------QSNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMD  132 (170)
Q Consensus        65 ------------~~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d  132 (170)
                                  ....+.++++||+|.+..      ...+.|+..++..    +.++.+|++||.++.+++++.+  |+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------~~~~~L~~~le~~----~~~~~~i~~~~~~~~l~~~l~s--r~~  162 (327)
T 1iqp_A           95 EKVKEFARTKPIGGASFKIIFLDEADALTQ------DAQQALRRTMEMF----SSNVRFILSCNYSSKIIEPIQS--RCA  162 (327)
T ss_dssp             HHHHHHHHSCCGGGCSCEEEEEETGGGSCH------HHHHHHHHHHHHT----TTTEEEEEEESCGGGSCHHHHH--TEE
T ss_pred             HHHHHHHhhCCcCCCCCeEEEEeCCCcCCH------HHHHHHHHHHHhc----CCCCeEEEEeCCccccCHHHHh--hCc
Confidence                        002278999999998733      3456677777654    3578889999999999999886  665


Q ss_pred             eEEEcCCCCc
Q 036857          133 MHFHLSSHTF  142 (170)
Q Consensus       133 ~~i~~~~p~~  142 (170)
                       .++|+.++.
T Consensus       163 -~~~~~~l~~  171 (327)
T 1iqp_A          163 -IFRFRPLRD  171 (327)
T ss_dssp             -EEECCCCCH
T ss_pred             -EEEecCCCH
Confidence             788888776

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=99.34  E-value=1e-12  Score=110.81  Aligned_cols=59  Identities=25%  Similarity=0.340  Sum_probs=41.0

Q ss_pred             cc-CCCcHHHHHHHHH---c-----cccccccc-------------------------cCceeEeeechhhhccCCccc-
Q 036857           43 WG-PYTGKSSLIAAMA---D-----LDLKEFQS-------------------------NSRSILVIEDAVTSFESNAYN-   87 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA---~-----~~l~~v~~-------------------------~~p~il~iDEiD~~~~~~~~~-   87 (170)
                      +| ||||||++|+++|   +     ++...+..                         ..++||||||+|.+...+... 
T Consensus        57 ~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~  136 (363)
T 3hws_A           57 IGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPS  136 (363)
T ss_dssp             ECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC-
T ss_pred             ECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccc
Confidence            79 9999999999999   1     11111110                         117899999999998743211 


Q ss_pred             -------hHHHHHHHHHhhch
Q 036857           88 -------SVALSALLKFVDGL  101 (170)
Q Consensus        88 -------~~~~~~ll~~lDg~  101 (170)
                             ....+.|+..|||.
T Consensus       137 ~~~~~~~~~~~~~Ll~~leg~  157 (363)
T 3hws_A          137 ITRDVSGEGVQQALLKLIEGT  157 (363)
T ss_dssp             --CHHHHHHHHHHHHHHHHCC
T ss_pred             cccccchHHHHHHHHHHhcCc
Confidence                   23788899999954

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=99.33  E-value=1.4e-12  Score=114.14  Aligned_cols=110  Identities=19%  Similarity=0.281  Sum_probs=73.3

Q ss_pred             CCCCCCCcccccCChhhH---HHhhcCc----------cc-CCCcHHHHHHHHH---ccccccccc--------------
Q 036857           18 KFEHPATSNTIATDFDMN---KALVDDY----------WG-PYTGKSSLIAAMA---DLDLKEFQS--------------   66 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k---~~l~~~~----------~G-PGtGKT~la~aiA---~~~l~~v~~--------------   66 (170)
                      ....|.+|+++++.+...   ..+...+          || ||||||++|++||   ...+..+..              
T Consensus        18 ~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~~~ir~~~~~   97 (447)
T 3pvs_A           18 ARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIER   97 (447)
T ss_dssp             HHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHHHHHHHHHH
T ss_pred             HHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHH
Confidence            467889999999998887   3333222          89 9999999999999   111111110              


Q ss_pred             -------cCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeC--CCCCCCCCCCCCCCccceEEEc
Q 036857           67 -------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTT--DYKDHIDPVPLRPSCMDMHFHL  137 (170)
Q Consensus        67 -------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tT--N~~~~lD~AllRpgR~d~~i~~  137 (170)
                             ..++||||||+|.+..      .....|+..++.      ..+++|++|  |....+++++++  |+. .+.|
T Consensus        98 a~~~~~~~~~~iLfIDEI~~l~~------~~q~~LL~~le~------~~v~lI~att~n~~~~l~~aL~s--R~~-v~~l  162 (447)
T 3pvs_A           98 ARQNRNAGRRTILFVDEVHRFNK------SQQDAFLPHIED------GTITFIGATTENPSFELNSALLS--RAR-VYLL  162 (447)
T ss_dssp             HHHHHHTTCCEEEEEETTTCC------------CCHHHHHT------TSCEEEEEESSCGGGSSCHHHHT--TEE-EEEC
T ss_pred             HHHhhhcCCCcEEEEeChhhhCH------HHHHHHHHHHhc------CceEEEecCCCCcccccCHHHhC--cee-EEee
Confidence                   1278999999998844      223456666664      245555555  566789999998  665 6778


Q ss_pred             CCCCc
Q 036857          138 SSHTF  142 (170)
Q Consensus       138 ~~p~~  142 (170)
                      ..|+.
T Consensus       163 ~~l~~  167 (447)
T 3pvs_A          163 KSLST  167 (447)
T ss_dssp             CCCCH
T ss_pred             CCcCH
Confidence            88876

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.33  E-value=4.5e-12  Score=104.88  Aligned_cols=113  Identities=19%  Similarity=0.228  Sum_probs=83.6

Q ss_pred             CCCCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-cc--------cccccc-----------
Q 036857           17 NKFEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-DL--------DLKEFQ-----------   65 (170)
Q Consensus        17 ~~~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~~--------~l~~v~-----------   65 (170)
                      +...+|.+|+++++.++.++.+...+          || ||||||++|+++| .+        .+..+.           
T Consensus        28 ~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~  107 (353)
T 1sxj_D           28 VEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVR  107 (353)
T ss_dssp             HHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHT
T ss_pred             HHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHH
Confidence            34678999999999999988876654          79 9999999999999 11        111110           


Q ss_pred             -----------------------ccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCC
Q 036857           66 -----------------------SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHID  122 (170)
Q Consensus        66 -----------------------~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD  122 (170)
                                             ...+.|||+||+|.+..      ...+.|+..++...    ....+|++||+++.++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~------~~~~~Ll~~le~~~----~~~~~il~~~~~~~l~  177 (353)
T 1sxj_D          108 EKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA------DAQSALRRTMETYS----GVTRFCLICNYVTRII  177 (353)
T ss_dssp             THHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH------HHHHHHHHHHHHTT----TTEEEEEEESCGGGSC
T ss_pred             HHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH------HHHHHHHHHHHhcC----CCceEEEEeCchhhCc
Confidence                                   01145999999998743      33466777776652    4667778889999999


Q ss_pred             CCCCCCCccceEEEcCCCCc
Q 036857          123 PVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       123 ~AllRpgR~d~~i~~~~p~~  142 (170)
                      +++.+  |+. .++|+.|+.
T Consensus       178 ~~l~s--R~~-~i~~~~~~~  194 (353)
T 1sxj_D          178 DPLAS--QCS-KFRFKALDA  194 (353)
T ss_dssp             HHHHH--HSE-EEECCCCCH
T ss_pred             chhhc--cCc-eEEeCCCCH
Confidence            99987  775 788888776

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=99.33  E-value=2.2e-12  Score=105.33  Aligned_cols=66  Identities=17%  Similarity=0.279  Sum_probs=50.3

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCC-------CCeEEEEeCCC------------------------
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSG-------DGRILVMTTDY------------------------  117 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~-------~~~~vi~tTN~------------------------  117 (170)
                      .++|||||+|.+.      ....+.|+..|+.-.....       .++++|+|||.                        
T Consensus       120 ~~vl~lDEi~~l~------~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~  193 (311)
T 4fcw_A          120 YSVILFDAIEKAH------PDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFK  193 (311)
T ss_dssp             SEEEEEETGGGSC------HHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHH
T ss_pred             CeEEEEeChhhcC------HHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHH
Confidence            4899999999873      3556777887765431101       36789999998                        


Q ss_pred             --CCCCCCCCCCCCccceEEEcCCCCc
Q 036857          118 --KDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       118 --~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                        ...++++|+.  ||+..+.|..|+.
T Consensus       194 ~~~~~~~~~l~~--R~~~~~~~~p~~~  218 (311)
T 4fcw_A          194 VLQQHFRPEFLN--RLDEIVVFRPLTK  218 (311)
T ss_dssp             HHHHHSCHHHHT--TCSEEEECCCCCH
T ss_pred             HHHHhCCHHHHh--cCCeEEEeCCCCH
Confidence              5578889985  9999999999987

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=99.29  E-value=2.7e-11  Score=94.33  Aligned_cols=116  Identities=15%  Similarity=0.179  Sum_probs=71.1

Q ss_pred             CCCCCCcccccCCh---hhHHHhhcCc----------cc-CCCcHHHHHHHHH-c-----ccc-----ccccc-------
Q 036857           19 FEHPATSNTIATDF---DMNKALVDDY----------WG-PYTGKSSLIAAMA-D-----LDL-----KEFQS-------   66 (170)
Q Consensus        19 ~~~p~~~~~v~~~~---~~k~~l~~~~----------~G-PGtGKT~la~aiA-~-----~~l-----~~v~~-------   66 (170)
                      +.++.+|++++..+   ...+.+...+          || ||||||++|+++| .     ..+     ..+..       
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (242)
T 3bos_A           21 LPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTALLE  100 (242)
T ss_dssp             CCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGGGGT
T ss_pred             CCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHH
Confidence            34447899988633   3333333221          79 9999999999999 1     111     11111       


Q ss_pred             --cCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCe-EEEEeCCCCC---CCCCCCCCCCccc--eEEEcC
Q 036857           67 --NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGR-ILVMTTDYKD---HIDPVPLRPSCMD--MHFHLS  138 (170)
Q Consensus        67 --~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~-~vi~tTN~~~---~lD~AllRpgR~d--~~i~~~  138 (170)
                        ..+.+|+|||+|.+...    ......++..++.....  ... +|+.+++.++   .+++++.+  |+.  ..++++
T Consensus       101 ~~~~~~vliiDe~~~~~~~----~~~~~~l~~~l~~~~~~--~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~  172 (242)
T 3bos_A          101 GLEQFDLICIDDVDAVAGH----PLWEEAIFDLYNRVAEQ--KRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQ  172 (242)
T ss_dssp             TGGGSSEEEEETGGGGTTC----HHHHHHHHHHHHHHHHH--CSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECC
T ss_pred             hccCCCEEEEeccccccCC----HHHHHHHHHHHHHHHHc--CCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeC
Confidence              12889999999987542    22244566666665442  233 4444444454   45677776  665  999999


Q ss_pred             CCCc
Q 036857          139 SHTF  142 (170)
Q Consensus       139 ~p~~  142 (170)
                      .|+.
T Consensus       173 ~~~~  176 (242)
T 3bos_A          173 PMMD  176 (242)
T ss_dssp             CCCG
T ss_pred             CCCH
Confidence            9998

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.27  E-value=1.1e-11  Score=113.89  Aligned_cols=92  Identities=20%  Similarity=0.284  Sum_probs=65.7

Q ss_pred             cc-CCCcHHHHHHHHH-----------ccccccccc---------------cCceeEeeechhhhccCCccchHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA-----------DLDLKEFQS---------------NSRSILVIEDAVTSFESNAYNSVALSALL   95 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-----------~~~l~~v~~---------------~~p~il~iDEiD~~~~~~~~~~~~~~~ll   95 (170)
                      || ||||||++|+++|           .++++.+..               ..++||||||+|.+      .....+.|+
T Consensus       527 ~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~l~~~~~~~~~~vl~lDEi~~~------~~~~~~~Ll  600 (758)
T 3pxi_A          527 LGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLTEKVRRKPYSVVLLDAIEKA------HPDVFNILL  600 (758)
T ss_dssp             ESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---CHHHHHHCSSSEEEEECGGGS------CHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccchhhHHHHhCCCeEEEEeCcccc------CHHHHHHHH
Confidence            69 9999999999999           122222221               12689999999976      346678888


Q ss_pred             HHhhchhc-------cCCCCeEEEEeCCCCCC------------CCCCCCCCCccceEEEcCCCCc
Q 036857           96 KFVDGLWS-------SSGDGRILVMTTDYKDH------------IDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus        96 ~~lDg~~~-------~~~~~~~vi~tTN~~~~------------lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      +.||.-.-       ....++++|+|||....            ++|+|+.  |||..|.|+.|+.
T Consensus       601 ~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~  664 (758)
T 3pxi_A          601 QVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEK  664 (758)
T ss_dssp             HHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CH
T ss_pred             HHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCH
Confidence            88875221       01246799999996554            7788875  9999999999998

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=99.26  E-value=7.8e-12  Score=112.86  Aligned_cols=110  Identities=15%  Similarity=0.183  Sum_probs=74.2

Q ss_pred             ccccCChhhHHHhhcCc---------------------cc-CCCcHHHHHHHHHc-cc-----------cccc-----c-
Q 036857           26 NTIATDFDMNKALVDDY---------------------WG-PYTGKSSLIAAMAD-LD-----------LKEF-----Q-   65 (170)
Q Consensus        26 ~~v~~~~~~k~~l~~~~---------------------~G-PGtGKT~la~aiA~-~~-----------l~~v-----~-   65 (170)
                      ..+.+++.+|+.+.-.+                     +| ||||||++|+++|. .+           ...+     . 
T Consensus       295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~  374 (595)
T 3f9v_A          295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVRE  374 (595)
T ss_dssp             STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSG
T ss_pred             chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeec
Confidence            45677788877763221                     69 99999999999991 10           0000     0 


Q ss_pred             --ccC------------ceeEeeechhhhccCCccchHHHHHHHHHhhc---------hhccCCCCeEEEEeCCCCC---
Q 036857           66 --SNS------------RSILVIEDAVTSFESNAYNSVALSALLKFVDG---------LWSSSGDGRILVMTTDYKD---  119 (170)
Q Consensus        66 --~~~------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg---------~~~~~~~~~~vi~tTN~~~---  119 (170)
                        ...            .+|+||||+|.+..      ...+.|++.|+.         .....+.++.+|+|||+.+   
T Consensus       375 ~~~g~~~~~~G~l~~A~~gil~IDEid~l~~------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~  448 (595)
T 3f9v_A          375 KGTGEYYLEAGALVLADGGIAVIDEIDKMRD------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRY  448 (595)
T ss_dssp             GGTSSCSEEECHHHHHSSSEECCTTTTCCCS------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCS
T ss_pred             cccccccccCCeeEecCCCcEEeehhhhCCH------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCcc
Confidence              000            58999999998733      345667777763         2222245678999999887   


Q ss_pred             ----------CCCCCCCCCCccce-EEEcCCCCcc
Q 036857          120 ----------HIDPVPLRPSCMDM-HFHLSSHTFR  143 (170)
Q Consensus       120 ----------~lD~AllRpgR~d~-~i~~~~p~~~  143 (170)
                                .+++|+++  |||. .+..++|+..
T Consensus       449 ~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e  481 (595)
T 3f9v_A          449 ISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ  481 (595)
T ss_dssp             CTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH
T ss_pred             CcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH
Confidence                      99999998  9985 5555666543

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=99.25  E-value=4.2e-11  Score=99.71  Aligned_cols=112  Identities=21%  Similarity=0.254  Sum_probs=83.9

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc-------------------------
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL-------------------------   59 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~-------------------------   59 (170)
                      ....|..|+++++.+...+.+...+           +| ||||||++|+++| .+                         
T Consensus         8 ~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~   87 (373)
T 1jr3_A            8 RKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRF   87 (373)
T ss_dssp             HHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCC
T ss_pred             HhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCC
Confidence            3568889999999998888776554           69 9999999999999 11                         


Q ss_pred             -ccccccc----------------------cCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857           60 -DLKEFQS----------------------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD  116 (170)
Q Consensus        60 -~l~~v~~----------------------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN  116 (170)
                       ++..+..                      ..+.||+|||+|.+.      ....+.|+..++..    +.++++|++||
T Consensus        88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~------~~~~~~Ll~~le~~----~~~~~~Il~~~  157 (373)
T 1jr3_A           88 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------RHSFNALLKTLEEP----PEHVKFLLATT  157 (373)
T ss_dssp             SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC------HHHHHHHHHHHHSC----CSSEEEEEEES
T ss_pred             CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc------HHHHHHHHHHHhcC----CCceEEEEEeC
Confidence             1111110                      016799999999873      24456777777654    45888999999


Q ss_pred             CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          117 YKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       117 ~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      .++.+++++.+  |+ ..++|+.|+.
T Consensus       158 ~~~~l~~~l~s--r~-~~i~~~~l~~  180 (373)
T 1jr3_A          158 DPQKLPVTILS--RC-LQFHLKALDV  180 (373)
T ss_dssp             CGGGSCHHHHT--TS-EEEECCCCCH
T ss_pred             ChHhCcHHHHh--he-eEeeCCCCCH
Confidence            99999999886  55 6889998887

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.25  E-value=1.3e-11  Score=100.62  Aligned_cols=113  Identities=15%  Similarity=0.156  Sum_probs=83.5

Q ss_pred             CCCCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-c------------cccc----------
Q 036857           17 NKFEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-D------------LDLK----------   62 (170)
Q Consensus        17 ~~~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~------------~~l~----------   62 (170)
                      .....|..|+++++.+...+.+...+          || ||||||++|+++| .            ++..          
T Consensus        12 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~   91 (323)
T 1sxj_B           12 VEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRN   91 (323)
T ss_dssp             HHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHT
T ss_pred             HHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHH
Confidence            34678899999999999988876554          79 9999999999998 1            1100          


Q ss_pred             ---ccc-------ccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccc
Q 036857           63 ---EFQ-------SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMD  132 (170)
Q Consensus        63 ---~v~-------~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d  132 (170)
                         .+.       ...+.||+|||+|.+..      ...+.|+..++..    +.++.+|++||.++.+++++.+  |+.
T Consensus        92 ~~~~~~~~~~~~~~~~~~viiiDe~~~l~~------~~~~~L~~~le~~----~~~~~~il~~~~~~~l~~~l~s--r~~  159 (323)
T 1sxj_B           92 QIKHFAQKKLHLPPGKHKIVILDEADSMTA------GAQQALRRTMELY----SNSTRFAFACNQSNKIIEPLQS--QCA  159 (323)
T ss_dssp             HHHHHHHBCCCCCTTCCEEEEEESGGGSCH------HHHHTTHHHHHHT----TTTEEEEEEESCGGGSCHHHHT--TSE
T ss_pred             HHHHHHhccccCCCCCceEEEEECcccCCH------HHHHHHHHHHhcc----CCCceEEEEeCChhhchhHHHh--hce
Confidence               000       11278999999998743      2345566666553    3578888899999999999987  554


Q ss_pred             eEEEcCCCCc
Q 036857          133 MHFHLSSHTF  142 (170)
Q Consensus       133 ~~i~~~~p~~  142 (170)
                       .++|+.|+.
T Consensus       160 -~i~~~~~~~  168 (323)
T 1sxj_B          160 -ILRYSKLSD  168 (323)
T ss_dssp             -EEECCCCCH
T ss_pred             -EEeecCCCH
Confidence             899998887

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.24  E-value=1.6e-11  Score=112.66  Aligned_cols=115  Identities=16%  Similarity=0.214  Sum_probs=79.4

Q ss_pred             CCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-cc-----------------cccccc-----
Q 036857           20 EHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-DL-----------------DLKEFQ-----   65 (170)
Q Consensus        20 ~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~~-----------------~l~~v~-----   65 (170)
                      ..|..|+.+++.....+++...+          +| ||||||++|+++| .+                 ++..+.     
T Consensus       180 ~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~  259 (758)
T 1r6b_X          180 ARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKY  259 (758)
T ss_dssp             HHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCC
T ss_pred             HhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccc
Confidence            34567999999988877776654          79 9999999999999 11                 111111     


Q ss_pred             ----------------ccCceeEeeechhhhccCCcc--chHHHHHHHHHhhchhccCCCCeEEEEeCCCC-----CCCC
Q 036857           66 ----------------SNSRSILVIEDAVTSFESNAY--NSVALSALLKFVDGLWSSSGDGRILVMTTDYK-----DHID  122 (170)
Q Consensus        66 ----------------~~~p~il~iDEiD~~~~~~~~--~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~-----~~lD  122 (170)
                                      ...++||||||+|.+++.+..  ....   ..+.+..+..  ..++.+|++||.+     -.+|
T Consensus       260 ~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~---~~~~L~~~l~--~~~~~~I~at~~~~~~~~~~~d  334 (758)
T 1r6b_X          260 RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVD---AANLIKPLLS--SGKIRVIGSTTYQEFSNIFEKD  334 (758)
T ss_dssp             SSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHH---HHHHHSSCSS--SCCCEEEEEECHHHHHCCCCCT
T ss_pred             cchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHH---HHHHHHHHHh--CCCeEEEEEeCchHHhhhhhcC
Confidence                            011699999999999864332  1222   2233333333  3567888888854     3689


Q ss_pred             CCCCCCCccceEEEcCCCCc
Q 036857          123 PVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       123 ~AllRpgR~d~~i~~~~p~~  142 (170)
                      +++.|  ||+ .+.++.|+.
T Consensus       335 ~aL~~--Rf~-~i~v~~p~~  351 (758)
T 1r6b_X          335 RALAR--RFQ-KIDITEPSI  351 (758)
T ss_dssp             TSSGG--GEE-EEECCCCCH
T ss_pred             HHHHh--Cce-EEEcCCCCH
Confidence            99998  998 699999998

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=99.23  E-value=3.9e-11  Score=99.25  Aligned_cols=91  Identities=12%  Similarity=0.186  Sum_probs=61.4

Q ss_pred             cc-CCCcHHHHHHHHH-c-----cccccccc-----------------------cCceeEeeechhhhccCCccchHHHH
Q 036857           43 WG-PYTGKSSLIAAMA-D-----LDLKEFQS-----------------------NSRSILVIEDAVTSFESNAYNSVALS   92 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~-----~~l~~v~~-----------------------~~p~il~iDEiD~~~~~~~~~~~~~~   92 (170)
                      || ||||||++|++++ .     ..+..+..                       ..+++|||||+|.+...    .....
T Consensus        43 ~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~----~~~~~  118 (324)
T 1l8q_A           43 YGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGK----ERTQI  118 (324)
T ss_dssp             ECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTC----HHHHH
T ss_pred             ECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCC----hHHHH
Confidence            79 9999999999999 1     11111110                       01789999999987542    12344


Q ss_pred             HHHHHhhchhccCCCCeEEEEeCCCCC---CCCCCCCCCCccc--eEEEcCCCCc
Q 036857           93 ALLKFVDGLWSSSGDGRILVMTTDYKD---HIDPVPLRPSCMD--MHFHLSSHTF  142 (170)
Q Consensus        93 ~ll~~lDg~~~~~~~~~~vi~tTN~~~---~lD~AllRpgR~d--~~i~~~~p~~  142 (170)
                      .++..++....  .+..++++++|.+.   .+++++.+  ||+  ..++++. +.
T Consensus       119 ~l~~~l~~~~~--~~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~  168 (324)
T 1l8q_A          119 EFFHIFNTLYL--LEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DN  168 (324)
T ss_dssp             HHHHHHHHHHH--TTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CH
T ss_pred             HHHHHHHHHHH--CCCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CH
Confidence            56666666544  23466666777666   68999986  886  7888888 55

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=99.23  E-value=1.8e-11  Score=108.62  Aligned_cols=110  Identities=13%  Similarity=0.104  Sum_probs=72.1

Q ss_pred             cccCChhhHHHhhcCc--------cc-CCCcHHHHHHHHH-cc-----------cc---ccccc---------c------
Q 036857           27 TIATDFDMNKALVDDY--------WG-PYTGKSSLIAAMA-DL-----------DL---KEFQS---------N------   67 (170)
Q Consensus        27 ~v~~~~~~k~~l~~~~--------~G-PGtGKT~la~aiA-~~-----------~l---~~v~~---------~------   67 (170)
                      .+++.++.++.+...+        +| ||||||++|+++| .+           .+   ..+..         .      
T Consensus        23 ~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~~g~~~~~  102 (500)
T 3nbx_X           23 GLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERL  102 (500)
T ss_dssp             TCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC----------CBC
T ss_pred             hhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhhchhHHhh
Confidence            4567777776665444        79 9999999999999 11           10   00000         0      


Q ss_pred             ------CceeEeeechhhhccCCccchHHHHHHHHHhhc-------hhccCCCCeEEEEeCCCCCC---CCCCCCCCCcc
Q 036857           68 ------SRSILVIEDAVTSFESNAYNSVALSALLKFVDG-------LWSSSGDGRILVMTTDYKDH---IDPVPLRPSCM  131 (170)
Q Consensus        68 ------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg-------~~~~~~~~~~vi~tTN~~~~---lD~AllRpgR~  131 (170)
                            .++|+|+|||+.+      .....+.|+..|+.       .....+ ..++|+|||....   ..+|+++  ||
T Consensus       103 ~~g~l~~~~IL~IDEI~r~------~~~~q~~LL~~lee~~v~i~G~~~~~~-~~~iI~ATN~lpe~~~~~~aLld--RF  173 (500)
T 3nbx_X          103 TSGYLPEAEIVFLDEIWKA------GPAILNTLLTAINERQFRNGAHVEKIP-MRLLVAASNELPEADSSLEALYD--RM  173 (500)
T ss_dssp             CTTSGGGCSEEEEESGGGC------CHHHHHHHHHHHHSSEEECSSSEEECC-CCEEEEEESSCCCTTCTTHHHHT--TC
T ss_pred             hccCCCcceeeeHHhHhhh------cHHHHHHHHHHHHHHhccCCCCcCCcc-hhhhhhccccCCCccccHHHHHH--HH
Confidence                  1568999999864      34567788888752       222212 3356788885322   3458887  99


Q ss_pred             ceEEEcCCCCcchH
Q 036857          132 DMHFHLSSHTFRHY  145 (170)
Q Consensus       132 d~~i~~~~p~~~~~  145 (170)
                      ..++++++|+.+..
T Consensus       174 ~~~i~v~~p~~~ee  187 (500)
T 3nbx_X          174 LIRLWLDKVQDKAN  187 (500)
T ss_dssp             CEEEECCSCCCHHH
T ss_pred             HHHHHHHHhhhhhh
Confidence            99999999998443

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.23  E-value=5.2e-11  Score=105.36  Aligned_cols=116  Identities=10%  Similarity=0.123  Sum_probs=74.5

Q ss_pred             cCCCCCCCCcccccCChhhHHHhhcC-------------------------c--cc-CCCcHHHHHHHHH--------cc
Q 036857           16 SNKFEHPATSNTIATDFDMNKALVDD-------------------------Y--WG-PYTGKSSLIAAMA--------DL   59 (170)
Q Consensus        16 ~~~~~~p~~~~~v~~~~~~k~~l~~~-------------------------~--~G-PGtGKT~la~aiA--------~~   59 (170)
                      ++....|.+|+++++.+..++++...                         +  +| ||||||++|+++|        .+
T Consensus        29 W~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~i  108 (516)
T 1sxj_A           29 WTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ  108 (516)
T ss_dssp             HHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             cccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            34467899999999999887765432                         1  79 9999999999999        11


Q ss_pred             ccc----------------------ccc---------ccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCC
Q 036857           60 DLK----------------------EFQ---------SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDG  108 (170)
Q Consensus        60 ~l~----------------------~v~---------~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~  108 (170)
                      +.+                      .++         ...++||||||+|.+....   +..+..+++.++..    ...
T Consensus       109 n~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~---~~~l~~L~~~l~~~----~~~  181 (516)
T 1sxj_A          109 NASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD---RGGVGQLAQFCRKT----STP  181 (516)
T ss_dssp             CTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS---TTHHHHHHHHHHHC----SSC
T ss_pred             eCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh---HHHHHHHHHHHHhc----CCC
Confidence            111                      010         1237899999999987632   22345566655542    223


Q ss_pred             eEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          109 RILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       109 ~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      +++++++.....+++ +.   |+...++|+.|+.
T Consensus       182 iIli~~~~~~~~l~~-l~---~r~~~i~f~~~~~  211 (516)
T 1sxj_A          182 LILICNERNLPKMRP-FD---RVCLDIQFRRPDA  211 (516)
T ss_dssp             EEEEESCTTSSTTGG-GT---TTSEEEECCCCCH
T ss_pred             EEEEEcCCCCccchh-hH---hceEEEEeCCCCH
Confidence            333333333344543 43   5567999999988

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.23  E-value=6.9e-11  Score=98.22  Aligned_cols=114  Identities=16%  Similarity=0.115  Sum_probs=85.0

Q ss_pred             cCCCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHHc-cc----------------------
Q 036857           16 SNKFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMAD-LD----------------------   60 (170)
Q Consensus        16 ~~~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA~-~~----------------------   60 (170)
                      ++...+|.+|+++++++...+.+...+           +| ||||||++++++|. +.                      
T Consensus         4 w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~   83 (354)
T 1sxj_E            4 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKL   83 (354)
T ss_dssp             CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC----------------
T ss_pred             chhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccc
Confidence            355789999999999999998887654           69 99999999999992 10                      


Q ss_pred             ---------ccccc----------------------------------ccCceeEeeechhhhccCCccchHHHHHHHHH
Q 036857           61 ---------LKEFQ----------------------------------SNSRSILVIEDAVTSFESNAYNSVALSALLKF   97 (170)
Q Consensus        61 ---------l~~v~----------------------------------~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~   97 (170)
                               ...+.                                  ...|.|+++||+|.+-      ....+.++..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~------~~~~~~L~~~  157 (354)
T 1sxj_E           84 ELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT------KDAQAALRRT  157 (354)
T ss_dssp             --CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC------HHHHHHHHHH
T ss_pred             eeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC------HHHHHHHHHH
Confidence                     00000                                  0124599999999852      2345667776


Q ss_pred             hhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857           98 VDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus        98 lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      ++..    ..+..+|++||.++.+.+++.+  |+ ..++|+.|+.
T Consensus       158 le~~----~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~  195 (354)
T 1sxj_E          158 MEKY----SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSD  195 (354)
T ss_dssp             HHHS----TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCH
T ss_pred             HHhh----cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCH
Confidence            6654    3478899999999999999986  66 7899999887

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=99.23  E-value=7.9e-12  Score=105.71  Aligned_cols=96  Identities=17%  Similarity=0.179  Sum_probs=62.5

Q ss_pred             cc-CCCcHHHHHHHHH---c-----ccccccc-------------------------ccCceeEeeechhhhccCCcc--
Q 036857           43 WG-PYTGKSSLIAAMA---D-----LDLKEFQ-------------------------SNSRSILVIEDAVTSFESNAY--   86 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA---~-----~~l~~v~-------------------------~~~p~il~iDEiD~~~~~~~~--   86 (170)
                      || ||||||++|+++|   .     ++...+.                         ...++||||||+|.+...+..  
T Consensus        78 ~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~  157 (376)
T 1um8_A           78 IGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRS  157 (376)
T ss_dssp             ECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------
T ss_pred             ECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCc
Confidence            79 9999999999999   1     1111110                         012789999999998763211  


Q ss_pred             ------chHHHHHHHHHhhchhc-----------------cCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857           87 ------NSVALSALLKFVDGLWS-----------------SSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus        87 ------~~~~~~~ll~~lDg~~~-----------------~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                            .....+.|+..||+...                 -...++++|+||| .+.+|+++.|  ||+ ...+++|..
T Consensus       158 ~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~-~~~l~~~l~~--R~~-~~~~g~~~~  232 (376)
T 1um8_A          158 ITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGA-FDGLAEIIKK--RTT-QNVLGFTQE  232 (376)
T ss_dssp             ------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEEC-CTTHHHHTTT--SCS-SCCCSCCCS
T ss_pred             eecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCC-HHHHHHHHHH--Hhc-ccccCCCch
Confidence                  11267888999986410                 0014567888888 6889999998  887 455666553

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.22  E-value=1.3e-11  Score=115.18  Aligned_cols=113  Identities=15%  Similarity=0.180  Sum_probs=71.0

Q ss_pred             CCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-cc----------c-------cccccc-----
Q 036857           21 HPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-DL----------D-------LKEFQS-----   66 (170)
Q Consensus        21 ~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~~----------~-------l~~v~~-----   66 (170)
                      .|..|+.+++.++..+++...+          +| ||||||++|+++| .+          +       +..+..     
T Consensus       165 r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~  244 (854)
T 1qvr_A          165 AEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYR  244 (854)
T ss_dssp             HTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----------
T ss_pred             hcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccc
Confidence            4678999999988887776644          79 9999999999999 11          1       111110     


Q ss_pred             -----------------cCceeEeeechhhhccCCccc--hHHHHHHHHHhhchhccCCCCeEEEEeCCCCC----CCCC
Q 036857           67 -----------------NSRSILVIEDAVTSFESNAYN--SVALSALLKFVDGLWSSSGDGRILVMTTDYKD----HIDP  123 (170)
Q Consensus        67 -----------------~~p~il~iDEiD~~~~~~~~~--~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~----~lD~  123 (170)
                                       ..|+||||||+|.+.+.....  ....+.+...++      ..++.+|+|||..+    .+|+
T Consensus       245 g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~------~~~i~~I~at~~~~~~~~~~d~  318 (854)
T 1qvr_A          245 GEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA------RGELRLIGATTLDEYREIEKDP  318 (854)
T ss_dssp             -CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH------TTCCCEEEEECHHHHHHHTTCT
T ss_pred             hHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh------CCCeEEEEecCchHHhhhccCH
Confidence                             127899999999997532211  222233333332      24677888888665    5899


Q ss_pred             CCCCCCccceEEEcCCCCc
Q 036857          124 VPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       124 AllRpgR~d~~i~~~~p~~  142 (170)
                      ++.|  ||+. |.++.|+.
T Consensus       319 aL~r--Rf~~-i~l~~p~~  334 (854)
T 1qvr_A          319 ALER--RFQP-VYVDEPTV  334 (854)
T ss_dssp             TTCS--CCCC-EEECCCCH
T ss_pred             HHHh--CCce-EEeCCCCH
Confidence            9999  9996 99999997

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=99.22  E-value=3.2e-11  Score=100.26  Aligned_cols=113  Identities=14%  Similarity=0.097  Sum_probs=76.0

Q ss_pred             cccccCChhhHHHhhcCc--------------cc-CCCcHHHHHHHHH-cc---------cccc--cc------------
Q 036857           25 SNTIATDFDMNKALVDDY--------------WG-PYTGKSSLIAAMA-DL---------DLKE--FQ------------   65 (170)
Q Consensus        25 ~~~v~~~~~~k~~l~~~~--------------~G-PGtGKT~la~aiA-~~---------~l~~--v~------------   65 (170)
                      .+++++.+...+++...+              || ||||||++|++++ .+         +...  +.            
T Consensus        18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   97 (387)
T 2v1u_A           18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS   97 (387)
T ss_dssp             CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence            477888888877776544              79 9999999999998 11         2111  10            


Q ss_pred             ------------------------------ccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeC
Q 036857           66 ------------------------------SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTT  115 (170)
Q Consensus        66 ------------------------------~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tT  115 (170)
                                                    ...|++|||||+|.+.... .....+..+++.++....  +.++.+|+||
T Consensus        98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~-~~~~~l~~l~~~~~~~~~--~~~~~~I~~t  174 (387)
T 2v1u_A           98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP-GGQDLLYRITRINQELGD--RVWVSLVGIT  174 (387)
T ss_dssp             HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST-THHHHHHHHHHGGGCC-------CEEEEEC
T ss_pred             HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC-CCChHHHhHhhchhhcCC--CceEEEEEEE
Confidence                                          0117799999999986522 133445555555544320  2478899999


Q ss_pred             CCC---CCCCCCCCCCCccce-EEEcCCCCc
Q 036857          116 DYK---DHIDPVPLRPSCMDM-HFHLSSHTF  142 (170)
Q Consensus       116 N~~---~~lD~AllRpgR~d~-~i~~~~p~~  142 (170)
                      |.+   +.+++++.+  ||.. .++|+.++.
T Consensus       175 ~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~  203 (387)
T 2v1u_A          175 NSLGFVENLEPRVKS--SLGEVELVFPPYTA  203 (387)
T ss_dssp             SCSTTSSSSCHHHHT--TTTSEECCBCCCCH
T ss_pred             CCCchHhhhCHHHHh--cCCCeEEeeCCCCH
Confidence            987   788999987  8875 899998886

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.20  E-value=4.1e-11  Score=109.93  Aligned_cols=92  Identities=17%  Similarity=0.254  Sum_probs=66.8

Q ss_pred             cc-CCCcHHHHHHHHH--------ccccccccc-----------------------------cCceeEeeechhhhccCC
Q 036857           43 WG-PYTGKSSLIAAMA--------DLDLKEFQS-----------------------------NSRSILVIEDAVTSFESN   84 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA--------~~~l~~v~~-----------------------------~~p~il~iDEiD~~~~~~   84 (170)
                      +| ||||||++|+++|        .++++.+..                             ..++||||||+|.+    
T Consensus       494 ~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~----  569 (758)
T 1r6b_X          494 AGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA----  569 (758)
T ss_dssp             ECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGS----
T ss_pred             ECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCcccc----
Confidence            79 9999999999999        122222111                             11689999999976    


Q ss_pred             ccchHHHHHHHHHhhchhcc-C------CCCeEEEEeCCCCC-------------------------CCCCCCCCCCccc
Q 036857           85 AYNSVALSALLKFVDGLWSS-S------GDGRILVMTTDYKD-------------------------HIDPVPLRPSCMD  132 (170)
Q Consensus        85 ~~~~~~~~~ll~~lDg~~~~-~------~~~~~vi~tTN~~~-------------------------~lD~AllRpgR~d  132 (170)
                        .....+.|++.||.-.-. .      -.++++|+|||...                         .++|+|+.  |||
T Consensus       570 --~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~  645 (758)
T 1r6b_X          570 --HPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLD  645 (758)
T ss_dssp             --CHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCS
T ss_pred             --CHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCC
Confidence              345778888888742110 0      13688999999743                         57788885  999


Q ss_pred             eEEEcCCCCc
Q 036857          133 MHFHLSSHTF  142 (170)
Q Consensus       133 ~~i~~~~p~~  142 (170)
                      ..|.|+.|+.
T Consensus       646 ~~i~~~~l~~  655 (758)
T 1r6b_X          646 NIIWFDHLST  655 (758)
T ss_dssp             EEEECCCCCH
T ss_pred             cceeeCCCCH
Confidence            9999999998

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.19  E-value=5e-11  Score=99.50  Aligned_cols=114  Identities=19%  Similarity=0.314  Sum_probs=83.1

Q ss_pred             cCCCCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-c------------ccccc--------
Q 036857           16 SNKFEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-D------------LDLKE--------   63 (170)
Q Consensus        16 ~~~~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~------------~~l~~--------   63 (170)
                      ++....|..|+++++++.+.+.+...+          || ||||||++|+++| .            ++.+.        
T Consensus        15 ~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir   94 (340)
T 1sxj_C           15 WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVR   94 (340)
T ss_dssp             HHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHH
T ss_pred             hHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHH
Confidence            344678999999999998888776544          79 9999999999999 1            11110        


Q ss_pred             -----cc------ccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccc
Q 036857           64 -----FQ------SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMD  132 (170)
Q Consensus        64 -----v~------~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d  132 (170)
                           +.      ...+.|+++||+|.+..      ...+.|+..++..    +....+|++||.++.+.+++.+  |+.
T Consensus        95 ~~i~~~~~~~~~~~~~~~viiiDe~~~l~~------~~~~~L~~~le~~----~~~~~~il~~n~~~~i~~~i~s--R~~  162 (340)
T 1sxj_C           95 NQIKDFASTRQIFSKGFKLIILDEADAMTN------AAQNALRRVIERY----TKNTRFCVLANYAHKLTPALLS--QCT  162 (340)
T ss_dssp             THHHHHHHBCCSSSCSCEEEEETTGGGSCH------HHHHHHHHHHHHT----TTTEEEEEEESCGGGSCHHHHT--TSE
T ss_pred             HHHHHHHhhcccCCCCceEEEEeCCCCCCH------HHHHHHHHHHhcC----CCCeEEEEEecCccccchhHHh--hce
Confidence                 00      11268999999998743      3355677766654    3467788889999999999987  664


Q ss_pred             eEEEcCCCCc
Q 036857          133 MHFHLSSHTF  142 (170)
Q Consensus       133 ~~i~~~~p~~  142 (170)
                       .++|..++.
T Consensus       163 -~~~~~~l~~  171 (340)
T 1sxj_C          163 -RFRFQPLPQ  171 (340)
T ss_dssp             -EEECCCCCH
T ss_pred             -eEeccCCCH
Confidence             678877665

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.13  E-value=3.4e-10  Score=94.69  Aligned_cols=119  Identities=16%  Similarity=0.161  Sum_probs=79.4

Q ss_pred             cCCCCCCCCcccccCChhhHHHhhc-------------Cc--cc-CCCcHHHHHHHHH-cc--cccc----cc-------
Q 036857           16 SNKFEHPATSNTIATDFDMNKALVD-------------DY--WG-PYTGKSSLIAAMA-DL--DLKE----FQ-------   65 (170)
Q Consensus        16 ~~~~~~p~~~~~v~~~~~~k~~l~~-------------~~--~G-PGtGKT~la~aiA-~~--~l~~----v~-------   65 (170)
                      ++....|..|++.++.+.+++.+..             .+  || ||||||++++++| .+  .+..    +.       
T Consensus        15 ~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~   94 (334)
T 1in4_A           15 GVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMA   94 (334)
T ss_dssp             --CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHH
T ss_pred             HHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHH
Confidence            4678899999999998877655431             12  79 9999999999999 11  1110    00       


Q ss_pred             -----ccCceeEeeechhhhccCCccchHHHHHHHHHhhchh-------cc-------CCCCeEEEEeCCCCCCCCCCCC
Q 036857           66 -----SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLW-------SS-------SGDGRILVMTTDYKDHIDPVPL  126 (170)
Q Consensus        66 -----~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~-------~~-------~~~~~~vi~tTN~~~~lD~All  126 (170)
                           ...+.|+|+||++.+..      .....++..+....       ..       .-..+.++.+||+++.|+++++
T Consensus        95 ~~~~~~~~~~v~~iDE~~~l~~------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~  168 (334)
T 1in4_A           95 AILTSLERGDVLFIDEIHRLNK------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLR  168 (334)
T ss_dssp             HHHHHCCTTCEEEEETGGGCCH------HHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHH
T ss_pred             HHHHHccCCCEEEEcchhhcCH------HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHH
Confidence                 11268999999998753      12233333332110       00       0123567789999999999999


Q ss_pred             CCCccceEEEcCCCCc
Q 036857          127 RPSCMDMHFHLSSHTF  142 (170)
Q Consensus       127 RpgR~d~~i~~~~p~~  142 (170)
                      +  ||...+.++.++.
T Consensus       169 s--R~~l~~~Ld~~~~  182 (334)
T 1in4_A          169 S--RFGIILELDFYTV  182 (334)
T ss_dssp             T--TCSEEEECCCCCH
T ss_pred             H--hcCceeeCCCCCH
Confidence            7  9999999999988

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=99.13  E-value=3.5e-11  Score=105.38  Aligned_cols=105  Identities=13%  Similarity=0.179  Sum_probs=72.7

Q ss_pred             CCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-cc----------c--ccccc---------
Q 036857           19 FEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-DL----------D--LKEFQ---------   65 (170)
Q Consensus        19 ~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~~----------~--l~~v~---------   65 (170)
                      ...|..|+.+++.....+++...+          +| ||||||++|+++| .+          +  +..+.         
T Consensus       173 ~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~  252 (468)
T 3pxg_A          173 IAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEF  252 (468)
T ss_dssp             HTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------
T ss_pred             HHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccchH
Confidence            345778999999999888776655          79 9999999999999 11          1  11111         


Q ss_pred             ------------ccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC-----CCCCCCCCC
Q 036857           66 ------------SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD-----HIDPVPLRP  128 (170)
Q Consensus        66 ------------~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~-----~lD~AllRp  128 (170)
                                  ...++|||+|      .    .....+.|+..|+      ...+.+|+|||..+     .+|+++.| 
T Consensus       253 e~~~~~~~~~~~~~~~~iLfiD------~----~~~a~~~L~~~L~------~g~v~vI~at~~~e~~~~~~~~~al~~-  315 (468)
T 3pxg_A          253 EDRLKKVMDEIRQAGNIILFID------A----AIDASNILKPSLA------RGELQCIGATTLDEYRKYIEKDAALER-  315 (468)
T ss_dssp             CTTHHHHHHHHHTCCCCEEEEC------C------------CCCTT------SSSCEEEEECCTTTTHHHHTTCSHHHH-
T ss_pred             HHHHHHHHHHHHhcCCeEEEEe------C----chhHHHHHHHhhc------CCCEEEEecCCHHHHHHHhhcCHHHHH-
Confidence                        0117899999      1    1112233333332      24789999999888     79999998 


Q ss_pred             CccceEEEcCCCCc
Q 036857          129 SCMDMHFHLSSHTF  142 (170)
Q Consensus       129 gR~d~~i~~~~p~~  142 (170)
                       ||.. |.++.|+.
T Consensus       316 -Rf~~-i~v~~p~~  327 (468)
T 3pxg_A          316 -RFQP-IQVDQPSV  327 (468)
T ss_dssp             -SEEE-EECCCCCH
T ss_pred             -hCcc-ceeCCCCH
Confidence             9985 99999988

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=99.11  E-value=1.4e-10  Score=93.21  Aligned_cols=112  Identities=13%  Similarity=0.087  Sum_probs=65.5

Q ss_pred             CCcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH-c----------cccccc---------cc---
Q 036857           23 ATSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA-D----------LDLKEF---------QS---   66 (170)
Q Consensus        23 ~~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA-~----------~~l~~v---------~~---   66 (170)
                      .+|+++++.....+++...+            || ||||||++|++++ .          ++...+         +.   
T Consensus         3 ~~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~   82 (265)
T 2bjv_A            3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEA   82 (265)
T ss_dssp             -------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC-
T ss_pred             cccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCcc
Confidence            36778887776665554332            79 9999999999999 1          111111         00   


Q ss_pred             ----------------cCceeEeeechhhhccCCccchHHHHHHHHHhhchh-------ccCCCCeEEEEeCCCC-----
Q 036857           67 ----------------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLW-------SSSGDGRILVMTTDYK-----  118 (170)
Q Consensus        67 ----------------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~-------~~~~~~~~vi~tTN~~-----  118 (170)
                                      ..+.+|||||+|.+..      .....|+..++...       .....++.+|+|||..     
T Consensus        83 ~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~  156 (265)
T 2bjv_A           83 GAFTGAQKRHPGRFERADGGTLFLDELATAPM------MVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMV  156 (265)
T ss_dssp             --------CCCCHHHHTTTSEEEEESGGGSCH------HHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHH
T ss_pred             cccccccccccchhhhcCCcEEEEechHhcCH------HHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHH
Confidence                            1157999999998743      34456666666321       0012467899999974     


Q ss_pred             --CCCCCCCCCCCccc-eEEEcCCCCc
Q 036857          119 --DHIDPVPLRPSCMD-MHFHLSSHTF  142 (170)
Q Consensus       119 --~~lD~AllRpgR~d-~~i~~~~p~~  142 (170)
                        ..+++++.+  ||. ..|+++....
T Consensus       157 ~~~~~~~~L~~--Rl~~~~i~lp~L~~  181 (265)
T 2bjv_A          157 NEGTFRADLLD--ALAFDVVQLPPLRE  181 (265)
T ss_dssp             HHTSSCHHHHH--HHCSEEEECCCGGG
T ss_pred             HcCCccHHHHH--hhcCcEEeCCChhh
Confidence              346777875  886 4566655444

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.09  E-value=7e-11  Score=108.63  Aligned_cols=104  Identities=13%  Similarity=0.183  Sum_probs=73.0

Q ss_pred             CCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-cc----------c--cccc-----------
Q 036857           20 EHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-DL----------D--LKEF-----------   64 (170)
Q Consensus        20 ~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~~----------~--l~~v-----------   64 (170)
                      ..|..++.+++.+...+++...+          || ||||||++|+++| .+          +  +..+           
T Consensus       174 ~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~~e  253 (758)
T 3pxi_A          174 AKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFE  253 (758)
T ss_dssp             TTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------C
T ss_pred             HhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccccchHH
Confidence            45677999999999988887665          79 9999999999999 11          1  1100           


Q ss_pred             ----------cccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC-----CCCCCCCCCC
Q 036857           65 ----------QSNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD-----HIDPVPLRPS  129 (170)
Q Consensus        65 ----------~~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~-----~lD~AllRpg  129 (170)
                                ....++|||||      .    .....+.++..|+      ..++.+|+|||..+     .+|+|+.|  
T Consensus       254 ~~l~~~~~~~~~~~~~iLfiD------~----~~~~~~~L~~~l~------~~~v~~I~at~~~~~~~~~~~d~al~r--  315 (758)
T 3pxi_A          254 DRLKKVMDEIRQAGNIILFID------A----AIDASNILKPSLA------RGELQCIGATTLDEYRKYIEKDAALER--  315 (758)
T ss_dssp             TTHHHHHHHHHTCCCCEEEEC------C------------CCCTT------SSSCEEEEECCTTTTHHHHTTCSHHHH--
T ss_pred             HHHHHHHHHHHhcCCEEEEEc------C----chhHHHHHHHHHh------cCCEEEEeCCChHHHHHHhhccHHHHh--
Confidence                      00118999999      1    1112233333333      25789999999988     79999999  


Q ss_pred             ccceEEEcCCCCc
Q 036857          130 CMDMHFHLSSHTF  142 (170)
Q Consensus       130 R~d~~i~~~~p~~  142 (170)
                      ||. .|+++.|+.
T Consensus       316 Rf~-~i~v~~p~~  327 (758)
T 3pxi_A          316 RFQ-PIQVDQPSV  327 (758)
T ss_dssp             SEE-EEECCCCCH
T ss_pred             hCc-EEEeCCCCH
Confidence            995 599999988

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.05  E-value=5.6e-10  Score=92.52  Aligned_cols=112  Identities=14%  Similarity=0.189  Sum_probs=77.0

Q ss_pred             CcccccCChhhHHHhhcCc--------------cc-CCCcHHHHHHHHH-cc------cccc--cc--------------
Q 036857           24 TSNTIATDFDMNKALVDDY--------------WG-PYTGKSSLIAAMA-DL------DLKE--FQ--------------   65 (170)
Q Consensus        24 ~~~~v~~~~~~k~~l~~~~--------------~G-PGtGKT~la~aiA-~~------~l~~--v~--------------   65 (170)
                      ..+++++.+...+.+...+              +| ||||||+++++++ .+      +...  +.              
T Consensus        18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i   97 (386)
T 2qby_A           18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADL   97 (386)
T ss_dssp             CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred             CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence            3477888887777765544              69 9999999999998 11      1111  00              


Q ss_pred             --------------c--------------cCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCC
Q 036857           66 --------------S--------------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDY  117 (170)
Q Consensus        66 --------------~--------------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~  117 (170)
                                    .              ..|+||+|||+|.+....  ....+..++..++...   ..++.+|++||.
T Consensus        98 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~--~~~~l~~l~~~~~~~~---~~~~~~I~~~~~  172 (386)
T 2qby_A           98 LESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKY--NDDILYKLSRINSEVN---KSKISFIGITND  172 (386)
T ss_dssp             TTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSS--CSTHHHHHHHHHHSCC---C--EEEEEEESC
T ss_pred             HHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccC--cCHHHHHHhhchhhcC---CCeEEEEEEECC
Confidence                          0              017899999999987532  1345667777776552   357888999987


Q ss_pred             C---CCCCCCCCCCCccc-eEEEcCCCCc
Q 036857          118 K---DHIDPVPLRPSCMD-MHFHLSSHTF  142 (170)
Q Consensus       118 ~---~~lD~AllRpgR~d-~~i~~~~p~~  142 (170)
                      +   +.+++++.+  |+. ..++++.++.
T Consensus       173 ~~~~~~~~~~~~~--r~~~~~i~l~~l~~  199 (386)
T 2qby_A          173 VKFVDLLDPRVKS--SLSEEEIIFPPYNA  199 (386)
T ss_dssp             GGGGGGCTTHHHH--TTTTEEEEECCCCH
T ss_pred             CChHhhhCHHHhc--cCCCeeEEeCCCCH
Confidence            7   578888876  665 4899998887

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=99.04  E-value=3.7e-10  Score=83.60  Aligned_cols=65  Identities=14%  Similarity=0.112  Sum_probs=45.0

Q ss_pred             cc-CCCcHHHHHHHHHc------ccccccccc---------------CceeEeeechhhhccCCccchHHHHHHHHHhhc
Q 036857           43 WG-PYTGKSSLIAAMAD------LDLKEFQSN---------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDG  100 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA~------~~l~~v~~~---------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg  100 (170)
                      || ||||||++|++++.      ..+. +...               ..++|||||+|.+..      .....++..|..
T Consensus        30 ~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~a~~g~l~ldei~~l~~------~~q~~Ll~~l~~  102 (145)
T 3n70_A           30 YGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLNDFIALAQGGTLVLSHPEHLTR------EQQYHLVQLQSQ  102 (145)
T ss_dssp             ESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHHHHHHHHTTSCEEEECGGGSCH------HHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhhcHHHHcCCcEEEEcChHHCCH------HHHHHHHHHHhh
Confidence            79 99999999999991      1222 2111               178999999998743      345567777743


Q ss_pred             hhccCCCCeEEEEeCCCC
Q 036857          101 LWSSSGDGRILVMTTDYK  118 (170)
Q Consensus       101 ~~~~~~~~~~vi~tTN~~  118 (170)
                      .    ..++.+|+|||..
T Consensus       103 ~----~~~~~~I~~t~~~  116 (145)
T 3n70_A          103 E----HRPFRLIGIGDTS  116 (145)
T ss_dssp             S----SCSSCEEEEESSC
T ss_pred             c----CCCEEEEEECCcC
Confidence            3    3467788888863

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=99.04  E-value=1.5e-10  Score=85.62  Aligned_cols=67  Identities=6%  Similarity=-0.040  Sum_probs=45.6

Q ss_pred             cc-CCCcHHHHHHHHH-cc-ccccccc--------------cCceeEeeechhhhccCCccchHHHHHHHHHhhchhccC
Q 036857           43 WG-PYTGKSSLIAAMA-DL-DLKEFQS--------------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSS  105 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~-~l~~v~~--------------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~  105 (170)
                      || ||||||++|++++ .. .+..+..              ..+.+|||||+|.+..      .....++..++...   
T Consensus        33 ~G~~GtGKt~lA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~lDei~~l~~------~~q~~Ll~~l~~~~---  103 (143)
T 3co5_A           33 TGEAGSPFETVARYFHKNGTPWVSPARVEYLIDMPMELLQKAEGGVLYVGDIAQYSR------NIQTGITFIIGKAE---  103 (143)
T ss_dssp             EEETTCCHHHHHGGGCCTTSCEECCSSTTHHHHCHHHHHHHTTTSEEEEEECTTCCH------HHHHHHHHHHHHHT---
T ss_pred             ECCCCccHHHHHHHHHHhCCCeEEechhhCChHhhhhHHHhCCCCeEEEeChHHCCH------HHHHHHHHHHHhCC---
Confidence            79 9999999999999 21 1222211              1168999999998743      33455666666543   


Q ss_pred             CCCeEEEEeCCCC
Q 036857          106 GDGRILVMTTDYK  118 (170)
Q Consensus       106 ~~~~~vi~tTN~~  118 (170)
                      ..++.+|+|||..
T Consensus       104 ~~~~~iI~~tn~~  116 (143)
T 3co5_A          104 RCRVRVIASCSYA  116 (143)
T ss_dssp             TTTCEEEEEEEEC
T ss_pred             CCCEEEEEecCCC
Confidence            3578889999854

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.02  E-value=3.3e-10  Score=94.63  Aligned_cols=62  Identities=16%  Similarity=0.204  Sum_probs=44.7

Q ss_pred             ceeEeeechhhhccCCccchHH-HHHHHHHhhchhccCCCCeEEEEeCCCC---CCCCCCCCCCCccceEEEcCCCCc
Q 036857           69 RSILVIEDAVTSFESNAYNSVA-LSALLKFVDGLWSSSGDGRILVMTTDYK---DHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~-~~~ll~~lDg~~~~~~~~~~vi~tTN~~---~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      ++||+|||+|.+....  .... +..++...        .++.+|+|||..   +.+++++.+  ||...++|+.++.
T Consensus       134 ~~vlilDEi~~l~~~~--~~~~~l~~l~~~~--------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~  199 (384)
T 2qby_B          134 RAIIYLDEVDTLVKRR--GGDIVLYQLLRSD--------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDA  199 (384)
T ss_dssp             CEEEEEETTHHHHHST--TSHHHHHHHHTSS--------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCH
T ss_pred             CCEEEEECHHHhccCC--CCceeHHHHhcCC--------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCH
Confidence            3499999999986532  1222 33333322        478899999977   788999886  8877999999877

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=99.02  E-value=6e-10  Score=96.93  Aligned_cols=92  Identities=14%  Similarity=0.198  Sum_probs=61.5

Q ss_pred             cc-CCCcHHHHHHHHH-cc-----c--ccccc-----------------------cc-CceeEeeechhhhccCCccchH
Q 036857           43 WG-PYTGKSSLIAAMA-DL-----D--LKEFQ-----------------------SN-SRSILVIEDAVTSFESNAYNSV   89 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~-----~--l~~v~-----------------------~~-~p~il~iDEiD~~~~~~~~~~~   89 (170)
                      || ||||||++|+++| .+     +  +..+.                       .. .+.||||||+|.+...    ..
T Consensus       136 ~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~----~~  211 (440)
T 2z4s_A          136 YGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK----TG  211 (440)
T ss_dssp             ECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC----HH
T ss_pred             ECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC----hH
Confidence            89 9999999999999 11     1  11000                       01 4789999999988652    13


Q ss_pred             HHHHHHHHhhchhccCCCCeEEEEeCCCCCC---CCCCCCCCCccc--eEEEcCCCCc
Q 036857           90 ALSALLKFVDGLWSSSGDGRILVMTTDYKDH---IDPVPLRPSCMD--MHFHLSSHTF  142 (170)
Q Consensus        90 ~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~---lD~AllRpgR~d--~~i~~~~p~~  142 (170)
                      ....++..++.+..  .+..+++.|.|.+..   +++++++  ||+  ..++++.|+.
T Consensus       212 ~q~~l~~~l~~l~~--~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~  265 (440)
T 2z4s_A          212 VQTELFHTFNELHD--SGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDE  265 (440)
T ss_dssp             HHHHHHHHHHHHHT--TTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCH
T ss_pred             HHHHHHHHHHHHHH--CCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCH
Confidence            34556666666554  234455544455554   8899987  786  8899999988

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=99.01  E-value=7.2e-10  Score=92.42  Aligned_cols=66  Identities=20%  Similarity=0.181  Sum_probs=48.4

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCC---CCCCCCCCCCCccce-EEEcCCCCc
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYK---DHIDPVPLRPSCMDM-HFHLSSHTF  142 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~---~~lD~AllRpgR~d~-~i~~~~p~~  142 (170)
                      |.||+|||+|.+      ....+..|+..++........++.+|++||.+   +.+++.+.+  |+.. .++|+.++.
T Consensus       126 ~~vlilDE~~~l------~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~  195 (389)
T 1fnn_A          126 YMFLVLDDAFNL------APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTK  195 (389)
T ss_dssp             CEEEEEETGGGS------CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBH
T ss_pred             eEEEEEECcccc------chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCH
Confidence            779999999987      23556667777765532111478899999988   678888776  7775 889988877

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.98  E-value=2.7e-10  Score=102.59  Aligned_cols=40  Identities=25%  Similarity=0.125  Sum_probs=34.3

Q ss_pred             CCCCCCCcccccCChhhHHHhhcCc--------cc-CCCcHHHHHHHHH
Q 036857           18 KFEHPATSNTIATDFDMNKALVDDY--------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        18 ~~~~p~~~~~v~~~~~~k~~l~~~~--------~G-PGtGKT~la~aiA   57 (170)
                      ...+|..|+++++...+.+.+...+        +| ||||||++|+++|
T Consensus        33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia   81 (604)
T 3k1j_A           33 IEVPEKLIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMA   81 (604)
T ss_dssp             SCCCSSHHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHH
T ss_pred             ccccccccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHh
Confidence            3566788999999999888776555        79 9999999999999

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=98.95  E-value=3.2e-09  Score=87.99  Aligned_cols=66  Identities=9%  Similarity=0.035  Sum_probs=40.6

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchh-------ccCCCCeEEEEeCCCC-------CCCCCCCCCCCccc-e
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLW-------SSSGDGRILVMTTDYK-------DHIDPVPLRPSCMD-M  133 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~-------~~~~~~~~vi~tTN~~-------~~lD~AllRpgR~d-~  133 (170)
                      .++|||||+|.+..      .....|+..++...       .....++.+|+|||..       ..+++.|..  ||. .
T Consensus        97 ~g~L~LDEi~~l~~------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~  168 (304)
T 1ojl_A           97 GGTLFLDEIGDISP------LMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVV  168 (304)
T ss_dssp             TSEEEEESCTTCCH------HHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSE
T ss_pred             CCEEEEeccccCCH------HHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcCee
Confidence            57999999998743      34556777776432       0112367899999975       234555554  664 4


Q ss_pred             EEEcCCCCc
Q 036857          134 HFHLSSHTF  142 (170)
Q Consensus       134 ~i~~~~p~~  142 (170)
                      .|++|....
T Consensus       169 ~i~lPpL~e  177 (304)
T 1ojl_A          169 AIEMPSLRQ  177 (304)
T ss_dssp             EEECCCSGG
T ss_pred             EEeccCHHH
Confidence            466655443

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=98.94  E-value=3.4e-09  Score=88.61  Aligned_cols=61  Identities=15%  Similarity=0.062  Sum_probs=48.7

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      +.|++|||+|.+.      ....+.|+..++.-    +.++++|++||.++.+++++++  |+ ..++|+.|+.
T Consensus       109 ~kvviIdead~l~------~~a~naLLk~lEep----~~~~~~Il~t~~~~~l~~ti~S--Rc-~~~~~~~~~~  169 (334)
T 1a5t_A          109 AKVVWVTDAALLT------DAAANALLKTLEEP----PAETWFFLATREPERLLATLRS--RC-RLHYLAPPPE  169 (334)
T ss_dssp             CEEEEESCGGGBC------HHHHHHHHHHHTSC----CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCH
T ss_pred             cEEEEECchhhcC------HHHHHHHHHHhcCC----CCCeEEEEEeCChHhCcHHHhh--cc-eeeeCCCCCH
Confidence            6899999999873      24467788887653    4578899999999999999997  55 3699988887

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=98.94  E-value=4.1e-09  Score=107.94  Aligned_cols=71  Identities=10%  Similarity=0.072  Sum_probs=46.8

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhh--chhccCC------CCeEEEEeCCCCC-----CCCCCCCCCCccceEE
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVD--GLWSSSG------DGRILVMTTDYKD-----HIDPVPLRPSCMDMHF  135 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lD--g~~~~~~------~~~~vi~tTN~~~-----~lD~AllRpgR~d~~i  135 (170)
                      ++|+|+||+|....+.-..+.....+...+|  |......      .++.+|+|||++.     .||++++|  || ..|
T Consensus      1337 ~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi 1413 (2695)
T 4akg_A         1337 NLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AIL 1413 (2695)
T ss_dssp             CEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EEE
T ss_pred             eEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eEE
Confidence            4799999999654432222222222223333  3332111      2578999999994     89999999  88 779


Q ss_pred             EcCCCCc
Q 036857          136 HLSSHTF  142 (170)
Q Consensus       136 ~~~~p~~  142 (170)
                      .++.|+.
T Consensus      1414 ~i~~P~~ 1420 (2695)
T 4akg_A         1414 YLGYPSG 1420 (2695)
T ss_dssp             ECCCCTT
T ss_pred             EeCCCCH
Confidence            9999998

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.94  E-value=2.1e-09  Score=81.51  Aligned_cols=70  Identities=17%  Similarity=0.233  Sum_probs=43.3

Q ss_pred             cc-CCCcHHHHHHHHH-c----cccc-------ccc------------------ccCceeEeeechhhhccCCccchHHH
Q 036857           43 WG-PYTGKSSLIAAMA-D----LDLK-------EFQ------------------SNSRSILVIEDAVTSFESNAYNSVAL   91 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~----~~l~-------~v~------------------~~~p~il~iDEiD~~~~~~~~~~~~~   91 (170)
                      || ||||||+++++++ .    .+..       .+.                  ...|.+|+|||++....    .....
T Consensus        44 ~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~----~~~~~  119 (180)
T 3ec2_A           44 VGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERL----SDWQR  119 (180)
T ss_dssp             CCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCC----CHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcC----CHHHH
Confidence            69 9999999999999 1    1110       000                  01189999999985422    22233


Q ss_pred             HHHHHHhhchhccCCCCeEEEEeCCCCC
Q 036857           92 SALLKFVDGLWSSSGDGRILVMTTDYKD  119 (170)
Q Consensus        92 ~~ll~~lDg~~~~~~~~~~vi~tTN~~~  119 (170)
                      ..+.+.++....   .+..+|+|||.+.
T Consensus       120 ~~l~~ll~~~~~---~~~~ii~tsn~~~  144 (180)
T 3ec2_A          120 ELISYIITYRYN---NLKSTIITTNYSL  144 (180)
T ss_dssp             HHHHHHHHHHHH---TTCEEEEECCCCS
T ss_pred             HHHHHHHHHHHH---cCCCEEEEcCCCh
Confidence            445555555543   3677888888654

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=98.93  E-value=1.1e-09  Score=92.21  Aligned_cols=63  Identities=10%  Similarity=0.165  Sum_probs=44.1

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCC----CCCCCCCCccc-eEEEcCCCCc
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHI----DPVPLRPSCMD-MHFHLSSHTF  142 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~l----D~AllRpgR~d-~~i~~~~p~~  142 (170)
                      ++|+++||+|.+.     .+..+-.+++....    ....+++|+++|..+..    ++++.  .|+. ..|+|+.++.
T Consensus       133 ~~ii~lDE~d~l~-----~q~~L~~l~~~~~~----~~s~~~vI~i~n~~d~~~~~L~~~v~--SR~~~~~i~F~pYt~  200 (318)
T 3te6_A          133 KTLILIQNPENLL-----SEKILQYFEKWISS----KNSKLSIICVGGHNVTIREQINIMPS--LKAHFTEIKLNKVDK  200 (318)
T ss_dssp             EEEEEEECCSSSC-----CTHHHHHHHHHHHC----SSCCEEEEEECCSSCCCHHHHHTCHH--HHTTEEEEECCCCCH
T ss_pred             ceEEEEecHHHhh-----cchHHHHHHhcccc----cCCcEEEEEEecCcccchhhcchhhh--ccCCceEEEeCCCCH
Confidence            7899999999997     23445555543221    13578999999988754    45555  3887 5899988877

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=98.91  E-value=2e-09  Score=100.35  Aligned_cols=66  Identities=17%  Similarity=0.274  Sum_probs=47.9

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhcc-C------CCCeEEEEeCCC------------------------
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSS-S------GDGRILVMTTDY------------------------  117 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~-~------~~~~~vi~tTN~------------------------  117 (170)
                      +++|||||+|.+      .....+.|+..||.-.-. .      -.++++|+|||.                        
T Consensus       661 ~~vl~lDEi~~l------~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~  734 (854)
T 1qvr_A          661 YSVILFDEIEKA------HPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFK  734 (854)
T ss_dssp             SEEEEESSGGGS------CHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             CeEEEEeccccc------CHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHH
Confidence            689999999976      346778888888843210 0      136789999997                        


Q ss_pred             --CCCCCCCCCCCCccceEEEcCCCCc
Q 036857          118 --KDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       118 --~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                        ...+.|+|+  +|||..+.|..|+.
T Consensus       735 ~~~~~f~~~l~--~Rl~~~i~~~pl~~  759 (854)
T 1qvr_A          735 VLQQHFRPEFL--NRLDEIVVFRPLTK  759 (854)
T ss_dssp             HHHTTSCHHHH--HTCSBCCBCCCCCH
T ss_pred             HHHhhCCHHHH--HhcCeEEeCCCCCH
Confidence              234566666  59999999988876

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=98.74  E-value=6.8e-09  Score=86.48  Aligned_cols=85  Identities=15%  Similarity=0.151  Sum_probs=63.8

Q ss_pred             cc-CCCcHHHHHHHHH-c--------ccccccccc--C---------------------ceeEeeechhhhccCCccchH
Q 036857           43 WG-PYTGKSSLIAAMA-D--------LDLKEFQSN--S---------------------RSILVIEDAVTSFESNAYNSV   89 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~--------~~l~~v~~~--~---------------------p~il~iDEiD~~~~~~~~~~~   89 (170)
                      || ||||||++|+++| .        .++..+...  .                     ..|+|+||+|.+.      ..
T Consensus        24 ~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt------~~   97 (305)
T 2gno_A           24 NGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT------QQ   97 (305)
T ss_dssp             ECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC------HH
T ss_pred             ECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhC------HH
Confidence            79 9999999999998 2        133222211  0                     4799999999873      34


Q ss_pred             HHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857           90 ALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus        90 ~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      ..+.|+..|+.-    +...++|++||.++.|.|++..  |   .++|..|+.
T Consensus        98 a~naLLk~LEep----~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~  141 (305)
T 2gno_A           98 AANAFLKALEEP----PEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVP  141 (305)
T ss_dssp             HHHHTHHHHHSC----CTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCC
T ss_pred             HHHHHHHHHhCC----CCCeEEEEEECChHhChHHHHc--e---eEeCCCCCH
Confidence            467788888753    4578888888889999999986  6   788888777

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.63  E-value=1.7e-08  Score=86.60  Aligned_cols=91  Identities=19%  Similarity=0.179  Sum_probs=62.3

Q ss_pred             cc-CCCcHHHHHHHHHc---ccccccc---cc---------CceeEeeechhhhcc-CCc----cchHHHHHHHHHhhch
Q 036857           43 WG-PYTGKSSLIAAMAD---LDLKEFQ---SN---------SRSILVIEDAVTSFE-SNA----YNSVALSALLKFVDGL  101 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA~---~~l~~v~---~~---------~p~il~iDEiD~~~~-~~~----~~~~~~~~ll~~lDg~  101 (170)
                      +| ||+|||++++++++   -.+..+.   ..         ..+++|+||++.+.. .++    ......+.+.+.+||.
T Consensus       175 ~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~~~~r~l~~~~~~~~~~~l~~~ldG~  254 (377)
T 1svm_A          175 KGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGS  254 (377)
T ss_dssp             ECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTTTTCCCCSHHHHHHTTHHHHHCS
T ss_pred             ECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHHHHHhhccccCcchHHHHHHHHhcCC
Confidence            69 99999999999991   1110000   11         156789999998875 111    1111235566667763


Q ss_pred             hccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCC
Q 036857          102 WSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHT  141 (170)
Q Consensus       102 ~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~  141 (170)
                             +.++++||+++.+ ++++||||+|..+...++.
T Consensus       255 -------v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~~~  286 (377)
T 1svm_A          255 -------VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVPKT  286 (377)
T ss_dssp             -------SCEEECCSSSCCE-EECCCCEEEEECSCCCCHH
T ss_pred             -------CeEeeccCchhhH-HHhhcCcccChhHHhhcHH
Confidence                   4578899999999 7999999999988776643

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=98.52  E-value=8.6e-08  Score=73.57  Aligned_cols=15  Identities=47%  Similarity=0.532  Sum_probs=14.6

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      || ||||||++|++++
T Consensus        60 ~G~~GtGKT~la~~i~   75 (202)
T 2w58_A           60 HGSFGVGKTYLLAAIA   75 (202)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            79 9999999999999

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=98.47  E-value=1.4e-07  Score=79.18  Aligned_cols=71  Identities=11%  Similarity=0.152  Sum_probs=43.8

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCC--CCeEEEEeCCCCC---CCC---CCCCCCCccceEEEcCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSG--DGRILVMTTDYKD---HID---PVPLRPSCMDMHFHLSSH  140 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~--~~~~vi~tTN~~~---~lD---~AllRpgR~d~~i~~~~p  140 (170)
                      |.||+|||+|.+..........+..++..++..... +  .++.+|+|||.++   .++   +.+.+  |+...++++.+
T Consensus       139 ~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l  215 (412)
T 1w5s_A          139 YLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSR-DGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAY  215 (412)
T ss_dssp             EEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCT-TSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCC
T ss_pred             eEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccC-CCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCC
Confidence            779999999998652112334455555555543210 2  4788888888665   334   55544  45555888887


Q ss_pred             Cc
Q 036857          141 TF  142 (170)
Q Consensus       141 ~~  142 (170)
                      +.
T Consensus       216 ~~  217 (412)
T 1w5s_A          216 KS  217 (412)
T ss_dssp             CH
T ss_pred             CH
Confidence            77

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=98.43  E-value=1.2e-07  Score=74.51  Aligned_cols=68  Identities=15%  Similarity=0.270  Sum_probs=47.2

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      .+||+|||++.+++.+..... ...++..+..-.   ..+.-+|++|++++.||.++.+  |++.++++..|..
T Consensus        88 ~~vliIDEAq~l~~~~~~~~e-~~rll~~l~~~r---~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~~  155 (199)
T 2r2a_A           88 GSIVIVDEAQDVWPARSAGSK-IPENVQWLNTHR---HQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNKM  155 (199)
T ss_dssp             TCEEEETTGGGTSBCCCTTCC-CCHHHHGGGGTT---TTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECSS
T ss_pred             ceEEEEEChhhhccCccccch-hHHHHHHHHhcC---cCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCccc
Confidence            789999999998763321111 123455554322   3466778888889999999775  9999999988655

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=98.35  E-value=2.9e-07  Score=91.34  Aligned_cols=48  Identities=8%  Similarity=0.167  Sum_probs=35.9

Q ss_pred             ceeEeeechhhhccCC-----------ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC
Q 036857           69 RSILVIEDAVTSFESN-----------AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD  119 (170)
Q Consensus        69 p~il~iDEiD~~~~~~-----------~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~  119 (170)
                      ||++|+|++|++++.+           +-..+.++++|..||++..  ..+++|| +||+.-
T Consensus      1161 ~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~--~~~v~v~-~~n~~~ 1219 (1706)
T 3cmw_A         1161 VDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK--QSNTLLI-FINQIR 1219 (1706)
T ss_dssp             CSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHH--HTTCEEE-EEECEE
T ss_pred             CeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHHHhhhc--cCCeEEE-Eecccc
Confidence            9999999999998831           1123468999999999876  3566666 777553

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=98.31  E-value=6.4e-07  Score=75.70  Aligned_cols=80  Identities=15%  Similarity=0.183  Sum_probs=53.5

Q ss_pred             cc-CCCcHHHHHHHHH-c--cc--cccc--------cccC--------------ceeEeeechhhhccCCcc------ch
Q 036857           43 WG-PYTGKSSLIAAMA-D--LD--LKEF--------QSNS--------------RSILVIEDAVTSFESNAY------NS   88 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~--~~--l~~v--------~~~~--------------p~il~iDEiD~~~~~~~~------~~   88 (170)
                      +| ||||||++|.++| .  ..  +..+        ....              ..+|+||+++.+......      ..
T Consensus       129 ~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~LLVIDsI~aL~~~~~~~s~~G~v~  208 (331)
T 2vhj_A          129 TGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLKNVIGAAGGNTTSGGIS  208 (331)
T ss_dssp             ECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCTTTC-----------CC
T ss_pred             EcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCCEEEEecccccccccccccccchHH
Confidence            79 9999999999999 1  11  1111        0000              229999999998652221      14


Q ss_pred             HHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCC
Q 036857           89 VALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVP  125 (170)
Q Consensus        89 ~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~Al  125 (170)
                      +.+++++..|+++..  ..++.+|++|| +...|+++
T Consensus       209 ~~lrqlL~~L~~~~k--~~gvtVIlttn-p~s~deal  242 (331)
T 2vhj_A          209 RGAFDLLSDIGAMAA--SRGCVVIASLN-PTSNDDKI  242 (331)
T ss_dssp             HHHHHHHHHHHHHHH--HHTCEEEEECC-CSSCSSSH
T ss_pred             HHHHHHHHHHHHHHh--hCCCEEEEEeC-CcccchhH
Confidence            567888888888765  35788899988 67788875

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.29  E-value=6.8e-07  Score=66.68  Aligned_cols=72  Identities=15%  Similarity=0.253  Sum_probs=43.2

Q ss_pred             cc-CCCcHHHHHHHHHc----cc--ccccc---------ccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCC
Q 036857           43 WG-PYTGKSSLIAAMAD----LD--LKEFQ---------SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSG  106 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA~----~~--l~~v~---------~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~  106 (170)
                      || +|+|||+++++++.    .+  ...+.         ...+.+|++||++.+...   .   ...+.+.++.....  
T Consensus        42 ~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lLilDE~~~~~~~---~---~~~l~~li~~~~~~--  113 (149)
T 2kjq_A           42 WGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLTDAAFEAEYLAVDQVEKLGNE---E---QALLFSIFNRFRNS--  113 (149)
T ss_dssp             ESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCCGGGGGCSEEEEESTTCCCSH---H---HHHHHHHHHHHHHH--
T ss_pred             ECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHHHHHhCCCEEEEeCccccChH---H---HHHHHHHHHHHHHc--
Confidence            79 99999999999991    11  11111         123889999999875331   1   34455555555542  


Q ss_pred             CCeEEEEeCC-CCCCCC
Q 036857          107 DGRILVMTTD-YKDHID  122 (170)
Q Consensus       107 ~~~~vi~tTN-~~~~lD  122 (170)
                      ...++|+||| .++.+.
T Consensus       114 g~~~iiits~~~p~~l~  130 (149)
T 2kjq_A          114 GKGFLLLGSEYTPQQLV  130 (149)
T ss_dssp             TCCEEEEEESSCTTTSS
T ss_pred             CCcEEEEECCCCHHHcc
Confidence            2233555666 555443

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=98.26  E-value=8.1e-07  Score=73.70  Aligned_cols=15  Identities=60%  Similarity=0.713  Sum_probs=14.6

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      || ||||||++|+++|
T Consensus       158 ~G~~GtGKT~La~aia  173 (308)
T 2qgz_A          158 YGDMGIGKSYLLAAMA  173 (308)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            79 9999999999999

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=98.14  E-value=1.1e-06  Score=69.99  Aligned_cols=92  Identities=16%  Similarity=0.134  Sum_probs=49.1

Q ss_pred             cc-CCCcHHHHHHHHH-c-----ccccccc------c-cCceeEeeechhhhccCCccchHHH-HHHHHHhhchh----c
Q 036857           43 WG-PYTGKSSLIAAMA-D-----LDLKEFQ------S-NSRSILVIEDAVTSFESNAYNSVAL-SALLKFVDGLW----S  103 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~-----~~l~~v~------~-~~p~il~iDEiD~~~~~~~~~~~~~-~~ll~~lDg~~----~  103 (170)
                      || ||||||++|.++| .     +.+..-.      . ....|+++||+|.-      ..+.+ ..+-+.+||..    .
T Consensus        64 ~GPPGtGKTt~a~ala~~l~g~i~~fans~s~f~l~~l~~~kIiiLDEad~~------~~~~~d~~lrn~ldG~~~~iD~  137 (212)
T 1tue_A           64 CGPANTGKSYFGMSFIHFIQGAVISFVNSTSHFWLEPLTDTKVAMLDDATTT------CWTYFDTYMRNALDGNPISIDR  137 (212)
T ss_dssp             ESCGGGCHHHHHHHHHHHHTCEECCCCCSSSCGGGGGGTTCSSEEEEEECHH------HHHHHHHHCHHHHHTCCEEEC-
T ss_pred             ECCCCCCHHHHHHHHHHHhCCCeeeEEeccchhhhcccCCCCEEEEECCCch------hHHHHHHHHHHHhCCCcccHHH
Confidence            89 9999999999999 1     1111000      0 12569999999842      12222 23456677741    1


Q ss_pred             cCCC-----CeEEEEeCCCCCCCCCCCCC-CCccceEEEcCCCC
Q 036857          104 SSGD-----GRILVMTTDYKDHIDPVPLR-PSCMDMHFHLSSHT  141 (170)
Q Consensus       104 ~~~~-----~~~vi~tTN~~~~lD~AllR-pgR~d~~i~~~~p~  141 (170)
                      .+..     ..-+|+|||..=.-+....+ -.|+- .+.|+.|-
T Consensus       138 Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~-~f~F~~~~  180 (212)
T 1tue_A          138 KHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRIT-VFEFPNAF  180 (212)
T ss_dssp             ---CCEEECCCCEEEEESSCTTSSSSCHHHHTSCE-EEECCSCC
T ss_pred             hhcCccccCCCCEEEecCCCcccccchhhhhhhEE-EEEcCCCC
Confidence            1111     34688999953333443310 02443 55555443

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}

Probab=98.11  E-value=1.2e-06  Score=77.44  Aligned_cols=104  Identities=18%  Similarity=0.218  Sum_probs=68.0

Q ss_pred             ccCChhhHHHhhcCc---------------cc-CCCcHHHHHHHH-Hcc---------------cccc-cc---------
Q 036857           28 IATDFDMNKALVDDY---------------WG-PYTGKSSLIAAM-ADL---------------DLKE-FQ---------   65 (170)
Q Consensus        28 v~~~~~~k~~l~~~~---------------~G-PGtGKT~la~ai-A~~---------------~l~~-v~---------   65 (170)
                      +.+++.+|..+.-.+               .| ||| ||++|+++ +.+               ++.. +.         
T Consensus       215 I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~~tG~~~~~  293 (506)
T 3f8t_A          215 LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKEDRGWALRA  293 (506)
T ss_dssp             STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEESSSEEEEE
T ss_pred             cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEcCCCcccCC
Confidence            667777776654221               49 999 99999999 610               0100 11         


Q ss_pred             ----ccCceeEeeechhhhccCCccchHHHHHHHHHhh-------chhccCCCCeEEEEeCCCCC-----------CCCC
Q 036857           66 ----SNSRSILVIEDAVTSFESNAYNSVALSALLKFVD-------GLWSSSGDGRILVMTTDYKD-----------HIDP  123 (170)
Q Consensus        66 ----~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lD-------g~~~~~~~~~~vi~tTN~~~-----------~lD~  123 (170)
                          .....++|+|||+.+      .....+.|++.|.       |.  ..+..+.||+|+|..+           .|++
T Consensus       294 G~l~LAdgGvl~lDEIn~~------~~~~qsaLlEaMEe~~VtI~G~--~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~  365 (506)
T 3f8t_A          294 GAAVLADGGILAVDHLEGA------PEPHRWALMEAMDKGTVTVDGI--ALNARCAVLAAINPGEQWPSDPPIARIDLDQ  365 (506)
T ss_dssp             CHHHHTTTSEEEEECCTTC------CHHHHHHHHHHHHHSEEEETTE--EEECCCEEEEEECCCC--CCSCGGGGCCSCH
T ss_pred             CeeEEcCCCeeehHhhhhC------CHHHHHHHHHHHhCCcEEECCE--EcCCCeEEEEEeCcccccCCCCCccccCCCh
Confidence                011689999999875      3456677777765       33  2256789999999876           7888


Q ss_pred             CCCCCCccceE-EEcCCCCc
Q 036857          124 VPLRPSCMDMH-FHLSSHTF  142 (170)
Q Consensus       124 AllRpgR~d~~-i~~~~p~~  142 (170)
                      +++  .|||+. +.+++|+.
T Consensus       366 alL--DRFDLi~i~~d~pd~  383 (506)
T 3f8t_A          366 DFL--SHFDLIAFLGVDPRP  383 (506)
T ss_dssp             HHH--TTCSEEEETTC----
T ss_pred             HHh--hheeeEEEecCCCCh
Confidence            999  599875 45677876

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=97.98  E-value=7.7e-06  Score=84.24  Aligned_cols=91  Identities=16%  Similarity=0.179  Sum_probs=60.0

Q ss_pred             cc-CCCcHHHHHHHHH---ccccccccccC-----------------ceeEeeechhhhccCCccchHHHHHHHHHhh--
Q 036857           43 WG-PYTGKSSLIAAMA---DLDLKEFQSNS-----------------RSILVIEDAVTSFESNAYNSVALSALLKFVD--   99 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA---~~~l~~v~~~~-----------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lD--   99 (170)
                      .| ||||||++++++|   +..+..+....                 .+.+++||++.+-.      .+++.+-.+++  
T Consensus       651 ~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~------evLs~l~~~l~~i  724 (2695)
T 4akg_A          651 FGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDE------KVLSAVSANIQQI  724 (2695)
T ss_dssp             ECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCH------HHHHHHHHHHHHH
T ss_pred             cCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcCh------HHHHHHHHHHHHH
Confidence            59 9999999999999   33333332221                 88999999987633      33333322222  


Q ss_pred             --chh------------ccCCCCeEEEEeCC----CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          100 --GLW------------SSSGDGRILVMTTD----YKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       100 --g~~------------~~~~~~~~vi~tTN----~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                        .+.            -....+..+++|.|    ....|++++.+  || +.+.+.+||.
T Consensus       725 ~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~  782 (2695)
T 4akg_A          725 QNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQS  782 (2695)
T ss_dssp             HHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCH
T ss_pred             HHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCH
Confidence              111            11123456888999    55689999986  55 6899999998

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=97.86  E-value=4.5e-05  Score=79.52  Aligned_cols=71  Identities=11%  Similarity=0.127  Sum_probs=45.1

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhh--chhccC------CCCeEEEEeCCCC-----CCCCCCCCCCCccceEE
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVD--GLWSSS------GDGRILVMTTDYK-----DHIDPVPLRPSCMDMHF  135 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lD--g~~~~~------~~~~~vi~tTN~~-----~~lD~AllRpgR~d~~i  135 (170)
                      ..|+|+||++.-..+.-..+....-|...||  |.....      -.++.+|+|+|++     ..|+++++|  ||-. +
T Consensus      1375 ~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~v-i 1451 (3245)
T 3vkg_A         1375 WLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAPI-L 1451 (3245)
T ss_dssp             EEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCCE-E
T ss_pred             eEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hceE-E
Confidence            4699999998533322222333333334444  222110      1356789999987     479999998  7766 8


Q ss_pred             EcCCCCc
Q 036857          136 HLSSHTF  142 (170)
Q Consensus       136 ~~~~p~~  142 (170)
                      .+++|+.
T Consensus      1452 ~i~~ps~ 1458 (3245)
T 3vkg_A         1452 LVDFPST 1458 (3245)
T ss_dssp             ECCCCCH
T ss_pred             EeCCCCH
Confidence            9999998

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.77  E-value=2.1e-05  Score=79.20  Aligned_cols=47  Identities=9%  Similarity=0.147  Sum_probs=33.6

Q ss_pred             ceeEeeechhhhccCC---------cc--chHHHHHHHHHhhchhccCCCCeEEEEeCCCC
Q 036857           69 RSILVIEDAVTSFESN---------AY--NSVALSALLKFVDGLWSSSGDGRILVMTTDYK  118 (170)
Q Consensus        69 p~il~iDEiD~~~~~~---------~~--~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~  118 (170)
                      |++|+|||++.+.+..         ..  ..+.++++|..|++...  ..+ +++++||..
T Consensus      1506 ~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~--~~~-v~VI~tNq~ 1563 (2050)
T 3cmu_A         1506 VDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK--QSN-TLLIFINQI 1563 (2050)
T ss_dssp             CSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHH--TTT-CEEEEEECE
T ss_pred             CCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHH--hCC-cEEEEEccc
Confidence            9999999999888721         11  35678999999999876  344 455556643

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=97.67  E-value=7.6e-05  Score=63.53  Aligned_cols=43  Identities=12%  Similarity=0.055  Sum_probs=27.2

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchh-------ccCCCCeEEEEeCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLW-------SSSGDGRILVMTTDY  117 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~-------~~~~~~~~vi~tTN~  117 (170)
                      ..+||+|||+.+-      ......|+..|+.-.       .....++-+|+|||.
T Consensus       232 ~gtlfldei~~l~------~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~  281 (387)
T 1ny5_A          232 GGTLFLDEIGELS------LEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNR  281 (387)
T ss_dssp             TSEEEEESGGGCC------HHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESS
T ss_pred             CcEEEEcChhhCC------HHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCC
Confidence            5699999999873      344555666665311       001236679999985

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=97.38  E-value=0.00018  Score=59.03  Aligned_cols=15  Identities=40%  Similarity=0.725  Sum_probs=14.7

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      || ||||||++|+|+|
T Consensus       110 ~GppgtGKt~~a~ala  125 (267)
T 1u0j_A          110 FGPATTGKTNIAEAIA  125 (267)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            79 9999999999999

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=97.31  E-value=0.0035  Score=50.69  Aligned_cols=32  Identities=25%  Similarity=0.160  Sum_probs=22.8

Q ss_pred             cccccCChhhHHHhhcCc-------cc-CCCcHHHHHHHHH
Q 036857           25 SNTIATDFDMNKALVDDY-------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        25 ~~~v~~~~~~k~~l~~~~-------~G-PGtGKT~la~aiA   57 (170)
                      -+.+++-+...+.+.. +       +| +|+|||++++.++
T Consensus        12 ~~~~~gR~~el~~L~~-l~~~~v~i~G~~G~GKT~L~~~~~   51 (357)
T 2fna_A           12 RKDFFDREKEIEKLKG-LRAPITLVLGLRRTGKSSIIKIGI   51 (357)
T ss_dssp             GGGSCCCHHHHHHHHH-TCSSEEEEEESTTSSHHHHHHHHH
T ss_pred             HHHhcChHHHHHHHHH-hcCCcEEEECCCCCCHHHHHHHHH
Confidence            3445555555555543 3       79 9999999999998

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=97.18  E-value=0.00061  Score=71.30  Aligned_cols=91  Identities=13%  Similarity=0.072  Sum_probs=59.1

Q ss_pred             cc-CCCcHHHHHHHHH---ccccccccccC-----------------ceeEeeechhhhccCCccchHHHHHHHHHhh--
Q 036857           43 WG-PYTGKSSLIAAMA---DLDLKEFQSNS-----------------RSILVIEDAVTSFESNAYNSVALSALLKFVD--   99 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA---~~~l~~v~~~~-----------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lD--   99 (170)
                      +| +|||||.+++.+|   +..+..+....                 .+-.+||||+.+-      ..+++.+.+++.  
T Consensus       610 ~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~------~~vLSvv~~qi~~I  683 (3245)
T 3vkg_A          610 FGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLE------ERILSAVSQQIQTI  683 (3245)
T ss_dssp             ECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSC------HHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCC------HHHHHHHHHHHHHH
Confidence            59 9999999999999   22222221111                 7788999998762      234444433332  


Q ss_pred             ---------------chhccCCCCeEEEEeCC----CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          100 ---------------GLWSSSGDGRILVMTTD----YKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       100 ---------------g~~~~~~~~~~vi~tTN----~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                                     |-.-....+.-+++|.|    ....|+.++..  || +.|.+..||.
T Consensus       684 ~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~  742 (3245)
T 3vkg_A          684 QVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDR  742 (3245)
T ss_dssp             HHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCH
T ss_pred             HHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCH
Confidence                           21111133567899999    45689999985  44 5699999998

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=97.15  E-value=0.00072  Score=57.18  Aligned_cols=15  Identities=27%  Similarity=0.249  Sum_probs=14.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| +||||+.+|+++.
T Consensus       158 ~GesGtGKe~lAr~ih  173 (368)
T 3dzd_A          158 TGESGTGKEIVARLIH  173 (368)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             EeCCCchHHHHHHHHH
Confidence            69 9999999999998

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.92  E-value=0.00065  Score=57.24  Aligned_cols=15  Identities=20%  Similarity=0.468  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||+|||+++..+|
T Consensus        67 ~G~pGsGKTtLal~la   82 (349)
T 2zr9_A           67 YGPESSGKTTVALHAV   82 (349)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            79 9999999999998

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=96.88  E-value=0.0021  Score=54.57  Aligned_cols=47  Identities=11%  Similarity=0.227  Sum_probs=30.0

Q ss_pred             ceeEeeechhhhcc----C---Cc----cchHHHHHHHHHhhchhccCCCCeEEEEeCCCC
Q 036857           69 RSILVIEDAVTSFE----S---NA----YNSVALSALLKFVDGLWSSSGDGRILVMTTDYK  118 (170)
Q Consensus        69 p~il~iDEiD~~~~----~---~~----~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~  118 (170)
                      +.++++|.+-.+.+    .   .+    ...+.+++++..|..+..  ..++.||+ +|+.
T Consensus       140 ~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak--~~~~tVI~-inqv  197 (356)
T 3hr8_A          140 VDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVN--KSKAVVIF-TNQI  197 (356)
T ss_dssp             CSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHH--TSSCEEEE-EEES
T ss_pred             CCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHH--hcCCEEEE-Eeee
Confidence            78999999988775    1   01    224667777777777765  24555544 3544

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=96.77  E-value=0.002  Score=56.32  Aligned_cols=71  Identities=17%  Similarity=0.183  Sum_probs=50.1

Q ss_pred             ceeEeeechhhhccCCc----cch--HHHHHHHHHhhchhcc------CCCCeEEEEeC-----CCCCCCCCCCCCCCcc
Q 036857           69 RSILVIEDAVTSFESNA----YNS--VALSALLKFVDGLWSS------SGDGRILVMTT-----DYKDHIDPVPLRPSCM  131 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~----~~~--~~~~~ll~~lDg~~~~------~~~~~~vi~tT-----N~~~~lD~AllRpgR~  131 (170)
                      ..|+++||+|.+....+    .-+  -+...||..||+....      ...++++|+|.     |..+ +-|.|+  |||
T Consensus       251 ~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~d-lipel~--~R~  327 (444)
T 1g41_A          251 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSD-LIPELQ--GRL  327 (444)
T ss_dssp             HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGG-SCHHHH--TTC
T ss_pred             CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhh-cchHHh--ccc
Confidence            56999999999986321    111  1446899999984211      13578888886     5444 446777  799


Q ss_pred             ceEEEcCCCCc
Q 036857          132 DMHFHLSSHTF  142 (170)
Q Consensus       132 d~~i~~~~p~~  142 (170)
                      ..+|+|+..+.
T Consensus       328 ~i~i~l~~lt~  338 (444)
T 1g41_A          328 PIRVELTALSA  338 (444)
T ss_dssp             CEEEECCCCCH
T ss_pred             ceeeeCCCCCH
Confidence            99999998888

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.75  E-value=0.0029  Score=53.77  Aligned_cols=44  Identities=11%  Similarity=0.212  Sum_probs=28.2

Q ss_pred             ceeEeeechhhhccCCc-----------cchHHHHHHHHHhhchhccCCCCeEEEEe
Q 036857           69 RSILVIEDAVTSFESNA-----------YNSVALSALLKFVDGLWSSSGDGRILVMT  114 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~-----------~~~~~~~~ll~~lDg~~~~~~~~~~vi~t  114 (170)
                      +.+|+||.+..+.....           ...+.+++++..|.++..  ..++.||++
T Consensus       153 ~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~--~~~~~VI~~  207 (366)
T 1xp8_A          153 IDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILS--KTGTAAIFI  207 (366)
T ss_dssp             CSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHT--TTCCEEEEE
T ss_pred             CCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHH--HcCCEEEEE
Confidence            78999999998874111           122456777777776654  345655554

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.63  E-value=0.00061  Score=51.09  Aligned_cols=49  Identities=14%  Similarity=0.117  Sum_probs=27.3

Q ss_pred             ceeEeeechhhhccCCccc-----------hHHHHHHHHHhhchhccCCCCeEEEEeCCCCCC
Q 036857           69 RSILVIEDAVTSFESNAYN-----------SVALSALLKFVDGLWSSSGDGRILVMTTDYKDH  120 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~-----------~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~  120 (170)
                      |.++++||=-+-+..+...           ......+.+.+..+..   ++.-+|++|...+.
T Consensus       102 p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~---~g~tvi~vtH~~~~  161 (171)
T 4gp7_A          102 PVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQR---EGFRYVYILNSPEE  161 (171)
T ss_dssp             EEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHH---HTCSEEEEECSHHH
T ss_pred             EEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHh---cCCcEEEEeCCHHH
Confidence            9999999975544311110           1134556666666654   25556666665443

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.58  E-value=0.0045  Score=62.72  Aligned_cols=47  Identities=17%  Similarity=0.209  Sum_probs=30.2

Q ss_pred             CCCcccCCCCCCCCcccc-cCChhhHHHhh-cCc--------cc-CCCcHHHHHHHHH
Q 036857           11 PSYWNSNKFEHPATSNTI-ATDFDMNKALV-DDY--------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        11 ~~~w~~~~~~~p~~~~~v-~~~~~~k~~l~-~~~--------~G-PGtGKT~la~aiA   57 (170)
                      .++|.+++..+....+.+ -+.+.+...+. .-+        +| ||||||++|.+++
T Consensus      1045 ~~~~~~l~~~~~~~~~~i~TGi~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~ 1102 (2050)
T 3cmu_A         1045 KGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1102 (2050)
T ss_dssp             TTSEEEGGGCTTTSCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred             cceeeecCCccccccccccCCcHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHH
Confidence            467877766655544444 33444444331 233        69 9999999999998

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.50  E-value=0.0021  Score=54.31  Aligned_cols=44  Identities=9%  Similarity=0.221  Sum_probs=26.6

Q ss_pred             ceeEeeechhhhccCCc-----------cchHHHHHHHHHhhchhccCCCCeEEEEe
Q 036857           69 RSILVIEDAVTSFESNA-----------YNSVALSALLKFVDGLWSSSGDGRILVMT  114 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~-----------~~~~~~~~ll~~lDg~~~~~~~~~~vi~t  114 (170)
                      +.+|+||.+..+.....           ...+.+++++..|.++..  ..++.||++
T Consensus       142 ~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~--~~~~~VI~~  196 (356)
T 1u94_A          142 VDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK--QSNTLLIFI  196 (356)
T ss_dssp             CSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHH--HHTCEEEEE
T ss_pred             CCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHH--HhCCEEEEE
Confidence            78999999998874111           112345666666665544  235556654

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.43  E-value=0.0048  Score=49.47  Aligned_cols=46  Identities=11%  Similarity=0.198  Sum_probs=28.8

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD  116 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN  116 (170)
                      |.+|+|||+-.+..........+..++..|..+..  ..++.+|+++.
T Consensus       134 ~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~--~~g~tvi~i~H  179 (279)
T 1nlf_A          134 RRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAA--DTGCSIVFLHH  179 (279)
T ss_dssp             CSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHH--HHCCEEEEEEE
T ss_pred             CCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHH--HcCCEEEEEec
Confidence            88999999988665333334455666666666643  13555666554

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.24  E-value=0.0016  Score=48.14  Aligned_cols=15  Identities=27%  Similarity=0.510  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++++|
T Consensus         9 ~G~~GsGKST~a~~La   24 (178)
T 1qhx_A            9 NGGSSAGKSGIVRCLQ   24 (178)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=96.19  E-value=0.022  Score=53.40  Aligned_cols=36  Identities=25%  Similarity=0.317  Sum_probs=25.7

Q ss_pred             CCCcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH
Q 036857           22 PATSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        22 p~~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA   57 (170)
                      |......++-+...++|...+            +| +|+|||+||+.++
T Consensus       120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~  168 (1249)
T 3sfz_A          120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAV  168 (1249)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHT
T ss_pred             CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHh
Confidence            344455666666665554433            79 9999999999988

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.19  E-value=0.0018  Score=47.65  Aligned_cols=16  Identities=31%  Similarity=0.455  Sum_probs=14.6

Q ss_pred             cc-CCCcHHHHHHHHHc
Q 036857           43 WG-PYTGKSSLIAAMAD   58 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA~   58 (170)
                      .| ||+|||++|+.++.
T Consensus         8 ~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            8 IGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ecCCCCCHHHHHHHHHh
Confidence            49 99999999999984

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.14  E-value=0.002  Score=47.06  Aligned_cols=15  Identities=27%  Similarity=0.206  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| ||+|||++++.+|
T Consensus         7 ~G~~GsGKsT~~~~L~   22 (173)
T 3kb2_A            7 EGPDCCFKSTVAAKLS   22 (173)
T ss_dssp             ECSSSSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999999

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.14  E-value=0.013  Score=45.08  Aligned_cols=15  Identities=33%  Similarity=0.417  Sum_probs=13.5

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|..+|
T Consensus        36 ~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           36 TGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHH
Confidence            59 9999999998876

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=96.09  E-value=0.0026  Score=54.95  Aligned_cols=40  Identities=15%  Similarity=-0.054  Sum_probs=25.6

Q ss_pred             cCCCCCCCCcccccCChhhHHHhhcC---------c---cc-CCCcHHHHHHHHH
Q 036857           16 SNKFEHPATSNTIATDFDMNKALVDD---------Y---WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        16 ~~~~~~p~~~~~v~~~~~~k~~l~~~---------~---~G-PGtGKT~la~aiA   57 (170)
                      +++...|.+|+.  +.+++++.+...         .   .| ||||||+++++++
T Consensus        14 ~~~~~~p~~~~~--Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~   66 (459)
T 3upu_A           14 LVPRGSHMTFDD--LTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFII   66 (459)
T ss_dssp             -------CCSSC--CCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHH
T ss_pred             CccccCCCcccc--CCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHH
Confidence            455777888886  477777766522         2   59 9999999999988

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.09  E-value=0.021  Score=48.21  Aligned_cols=37  Identities=22%  Similarity=0.127  Sum_probs=26.9

Q ss_pred             CCCCcccccCChhhHHHhhcCc-----cc-CCCcHHHHHHHHH
Q 036857           21 HPATSNTIATDFDMNKALVDDY-----WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        21 ~p~~~~~v~~~~~~k~~l~~~~-----~G-PGtGKT~la~aiA   57 (170)
                      .+.+++++.+++..+.-....=     -| .|+||||+.++++
T Consensus       102 ~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~  144 (356)
T 3jvv_A          102 KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAML  144 (356)
T ss_dssp             SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHH
T ss_pred             CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHH
Confidence            4557888888776655332111     49 9999999999998

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.02  E-value=0.01  Score=50.81  Aligned_cols=15  Identities=40%  Similarity=0.530  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .||||||+.|+||
T Consensus        35 lGpsGsGKSTLLr~ia   50 (381)
T 3rlf_A           35 VGPSGCGKSTLLRMIA   50 (381)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             EcCCCchHHHHHHHHH
Confidence            49 9999999999999

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.02  E-value=0.0025  Score=46.91  Aligned_cols=15  Identities=33%  Similarity=0.321  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.+|
T Consensus        10 ~G~~GsGKSTl~~~La   25 (173)
T 1kag_A           10 VGPMGAGKSTIGRQLA   25 (173)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=95.95  E-value=0.0045  Score=55.78  Aligned_cols=34  Identities=24%  Similarity=0.288  Sum_probs=24.2

Q ss_pred             CcccccCChhhHHHhhcCc--------cc-CCCcHHHHHHHHH
Q 036857           24 TSNTIATDFDMNKALVDDY--------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        24 ~~~~v~~~~~~k~~l~~~~--------~G-PGtGKT~la~aiA   57 (170)
                      .|-+-.+++.|++.+...+        +| ||||||+++-.+.
T Consensus       184 ~~~~~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I  226 (646)
T 4b3f_X          184 TFFNTCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEII  226 (646)
T ss_dssp             CCSSTTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHH
T ss_pred             cccCCCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHH
Confidence            3434468899988876533        79 9999998655554

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=95.91  E-value=0.0029  Score=46.94  Aligned_cols=15  Identities=47%  Similarity=0.525  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++++|
T Consensus        10 ~G~~GsGKsTla~~La   25 (175)
T 1via_A           10 IGFMGSGKSTLARALA   25 (175)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            49 9999999999999

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=95.87  E-value=0.0031  Score=46.95  Aligned_cols=15  Identities=33%  Similarity=0.355  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.+|
T Consensus        11 ~G~~GsGKst~a~~La   26 (185)
T 3trf_A           11 IGLMGAGKTSVGSQLA   26 (185)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999999

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=95.86  E-value=0.0029  Score=46.92  Aligned_cols=15  Identities=40%  Similarity=0.623  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.++
T Consensus         7 ~G~~GsGKsT~~~~L~   22 (194)
T 1nks_A            7 TGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EECTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=95.83  E-value=0.003  Score=47.17  Aligned_cols=16  Identities=44%  Similarity=0.702  Sum_probs=14.7

Q ss_pred             cc-CCCcHHHHHHHHHc
Q 036857           43 WG-PYTGKSSLIAAMAD   58 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA~   58 (170)
                      .| ||+||||+++.+|+
T Consensus        15 ~G~~GsGKSTl~~~La~   31 (191)
T 1zp6_A           15 SGHPGSGKSTIAEALAN   31 (191)
T ss_dssp             EECTTSCHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHh
Confidence            49 99999999999994

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=95.81  E-value=0.0034  Score=46.57  Aligned_cols=15  Identities=20%  Similarity=0.218  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.+|
T Consensus         9 ~G~~GsGKsT~~~~L~   24 (192)
T 1kht_A            9 TGVPGVGSTTSSQLAM   24 (192)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=95.80  E-value=0.0034  Score=47.78  Aligned_cols=15  Identities=40%  Similarity=0.348  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++++|
T Consensus        31 ~G~~GsGKsTl~~~La   46 (199)
T 3vaa_A           31 TGYMGAGKTTLGKAFA   46 (199)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            49 9999999999999

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=95.79  E-value=0.0032  Score=46.92  Aligned_cols=15  Identities=53%  Similarity=0.742  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.++
T Consensus        11 ~G~~GsGKST~~~~L~   26 (193)
T 2rhm_A           11 TGHPATGKTTLSQALA   26 (193)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=95.79  E-value=0.0071  Score=48.37  Aligned_cols=15  Identities=27%  Similarity=0.248  Sum_probs=13.5

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+++-.+|
T Consensus        12 ~~kgGvGKTt~a~~la   27 (228)
T 2r8r_A           12 GAAPGVGKTYAMLQAA   27 (228)
T ss_dssp             ESSTTSSHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHH
Confidence            47 9999999998888

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=95.72  E-value=0.0037  Score=45.24  Aligned_cols=18  Identities=28%  Similarity=0.427  Sum_probs=14.9

Q ss_pred             cc-CCCcHHHHHHHHHccc
Q 036857           43 WG-PYTGKSSLIAAMADLD   60 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA~~~   60 (170)
                      .| ||+|||++|+.+...+
T Consensus         7 ~G~~GsGKsT~a~~L~~~g   25 (179)
T 3lw7_A            7 TGMPGSGKSEFAKLLKERG   25 (179)
T ss_dssp             ECCTTSCHHHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHHHCC
Confidence            49 9999999999996333

>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*

Probab=95.72  E-value=0.019  Score=47.13  Aligned_cols=87  Identities=13%  Similarity=0.021  Sum_probs=54.0

Q ss_pred             cc-CCCcHHHHHHHHH----ccc-----cccccccC-----------------ceeEeeechhh-hccCCccchHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA----DLD-----LKEFQSNS-----------------RSILVIEDAVT-SFESNAYNSVALSAL   94 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA----~~~-----l~~v~~~~-----------------p~il~iDEiD~-~~~~~~~~~~~~~~l   94 (170)
                      || +|+||++.+++++    ..+     ...+..+.                 ..|+++||+|. +.      ....+.|
T Consensus        24 ~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~------~~~~~aL   97 (343)
T 1jr3_D           24 LGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPN------AAINEQL   97 (343)
T ss_dssp             EESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTTCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCC------TTHHHHH
T ss_pred             ECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCCCCHHHHHHHhcCcCCccCCeEEEEECCCCCCC------hHHHHHH
Confidence            79 9999999999998    111     11111111                 67999999987 52      2345667


Q ss_pred             HHHhhchhccCCCCeEEEEeCCCCC------CCCCCCCCCCccceEEEcCCCCc
Q 036857           95 LKFVDGLWSSSGDGRILVMTTDYKD------HIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus        95 l~~lDg~~~~~~~~~~vi~tTN~~~------~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      +..+...    +.++++|++|+.++      .+-+++...|   ..++|..++.
T Consensus        98 l~~le~p----~~~~~~il~~~~~~~~~~~~k~~~~i~sr~---~~~~~~~l~~  144 (343)
T 1jr3_D           98 LTLTGLL----HDDLLLIVRGNKLSKAQENAAWFTALANRS---VQVTCQTPEQ  144 (343)
T ss_dssp             HHHHTTC----BTTEEEEEEESCCCTTTTTSHHHHHHTTTC---EEEEECCCCT
T ss_pred             HHHHhcC----CCCeEEEEEcCCCChhhHhhHHHHHHHhCc---eEEEeeCCCH
Confidence            7777654    34666666555433      4556666533   4678877765

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=95.71  E-value=0.0039  Score=46.44  Aligned_cols=15  Identities=40%  Similarity=0.554  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|+.+|
T Consensus         8 ~G~~GsGKsT~a~~La   23 (184)
T 2iyv_A            8 VGLPGSGKSTIGRRLA   23 (184)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=95.71  E-value=0.004  Score=45.79  Aligned_cols=19  Identities=42%  Similarity=0.503  Sum_probs=15.8

Q ss_pred             cc-CCCcHHHHHHHHH-cccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDL   61 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l   61 (170)
                      -| ||+|||++++.+| .+++
T Consensus        13 ~G~~GsGKSTva~~La~~lg~   33 (168)
T 1zuh_A           13 IGFMGSGKSSLAQELGLALKL   33 (168)
T ss_dssp             ESCTTSSHHHHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHHHHhCC
Confidence            39 9999999999999 3444

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=95.70  E-value=0.004  Score=46.23  Aligned_cols=15  Identities=33%  Similarity=0.523  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|+.+|
T Consensus         9 ~G~~GsGKsT~a~~L~   24 (196)
T 1tev_A            9 LGGPGAGKGTQCARIV   24 (196)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=95.66  E-value=0.0043  Score=46.15  Aligned_cols=15  Identities=33%  Similarity=0.559  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.+|
T Consensus        10 ~G~~GsGKST~~~~La   25 (186)
T 3cm0_A           10 LGPPGAGKGTQASRLA   25 (186)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=95.63  E-value=0.0044  Score=46.44  Aligned_cols=15  Identities=33%  Similarity=0.567  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| ||+||||+++.+|
T Consensus         6 ~G~~GsGKsT~~~~L~   21 (205)
T 2jaq_A            6 FGTVGAGKSTISAEIS   21 (205)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             ECCCccCHHHHHHHHH
Confidence            39 9999999999999

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=95.62  E-value=0.024  Score=48.10  Aligned_cols=15  Identities=33%  Similarity=0.565  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .||||||+.|+||
T Consensus        36 lGpsGsGKSTLLr~ia   51 (359)
T 3fvq_A           36 IGASGCGKTTLLRCLA   51 (359)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCchHHHHHHHHh
Confidence            39 9999999999999

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=95.61  E-value=0.0045  Score=46.69  Aligned_cols=15  Identities=33%  Similarity=0.284  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.+|
T Consensus        10 ~G~~GsGKsT~~~~L~   25 (213)
T 2plr_A           10 EGIDGSGKSSQATLLK   25 (213)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            49 9999999999999

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=95.59  E-value=0.0046  Score=45.95  Aligned_cols=15  Identities=40%  Similarity=0.530  Sum_probs=14.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++++|
T Consensus        17 ~G~~GsGKst~~~~l~   32 (180)
T 3iij_A           17 TGTPGVGKTTLGKELA   32 (180)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHH
Confidence            59 9999999999999

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=95.58  E-value=0.0048  Score=45.23  Aligned_cols=15  Identities=20%  Similarity=0.195  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.+|
T Consensus         8 ~G~~GsGKsT~a~~La   23 (173)
T 1e6c_A            8 VGARGCGMTTVGRELA   23 (173)
T ss_dssp             ESCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=95.57  E-value=0.0048  Score=46.43  Aligned_cols=22  Identities=32%  Similarity=0.483  Sum_probs=17.2

Q ss_pred             cc-CCCcHHHHHHHHHcc--ccccc
Q 036857           43 WG-PYTGKSSLIAAMADL--DLKEF   64 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA~~--~l~~v   64 (170)
                      .| ||+|||++++.+|+.  ++..+
T Consensus        16 ~G~~GsGKSTv~~~La~~l~g~~~i   40 (184)
T 1y63_A           16 TGTPGTGKTSMAEMIAAELDGFQHL   40 (184)
T ss_dssp             ECSTTSSHHHHHHHHHHHSTTEEEE
T ss_pred             ECCCCCCHHHHHHHHHHhcCCCEEe
Confidence            49 999999999999933  54433

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=95.54  E-value=0.0049  Score=46.76  Aligned_cols=15  Identities=47%  Similarity=0.496  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| ||+|||++++.++
T Consensus        24 ~G~~GsGKSTla~~L~   39 (202)
T 3t61_A           24 MGVSGSGKSSVGEAIA   39 (202)
T ss_dssp             ECSTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=95.54  E-value=0.011  Score=50.74  Aligned_cols=46  Identities=15%  Similarity=0.306  Sum_probs=26.6

Q ss_pred             ceeEeeechhhhccCCc-------cchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857           69 RSILVIEDAVTSFESNA-------YNSVALSALLKFVDGLWSSSGDGRILVMTTD  116 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~-------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN  116 (170)
                      |.+|++|++-.++...-       ..++.+..++..|..+..  ..++.||+++.
T Consensus       274 ~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lak--e~gitVIlv~H  326 (400)
T 3lda_A          274 FSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLAD--QFGVAVVVTNQ  326 (400)
T ss_dssp             EEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHH--HHCCEEEEEEE
T ss_pred             CceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHH--HcCCEEEEEEe
Confidence            88999999987765211       112334666666666653  23555555544

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=95.49  E-value=0.023  Score=48.33  Aligned_cols=44  Identities=14%  Similarity=0.316  Sum_probs=25.6

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD  119 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~  119 (170)
                      |.||++||-=+-+.     ......+++.+..+..  ..+.-+|+.|...+
T Consensus       182 P~lLLlDEPTs~LD-----~~~~~~i~~lL~~l~~--~~g~Tii~vTHdl~  225 (366)
T 3tui_C          182 PKVLLCDQATSALD-----PATTRSILELLKDINR--RLGLTILLITHEMD  225 (366)
T ss_dssp             CSEEEEESTTTTSC-----HHHHHHHHHHHHHHHH--HSCCEEEEEESCHH
T ss_pred             CCEEEEECCCccCC-----HHHHHHHHHHHHHHHH--hCCCEEEEEecCHH
Confidence            99999999843322     2334445555555543  13556667776554

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=95.46  E-value=0.0051  Score=45.93  Aligned_cols=15  Identities=27%  Similarity=0.452  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.+|
T Consensus        15 ~G~~GsGKsT~~~~La   30 (196)
T 2c95_A           15 VGGPGSGKGTQCEKIV   30 (196)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=95.45  E-value=0.021  Score=46.43  Aligned_cols=46  Identities=13%  Similarity=0.368  Sum_probs=26.5

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHI  121 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~l  121 (170)
                      |.+|++||-=+-+.     ......+++.+..+..  ..+..||++|...+.+
T Consensus       162 P~lLlLDEPts~LD-----~~~~~~i~~~l~~l~~--~~g~tvi~vtHdl~~~  207 (275)
T 3gfo_A          162 PKVLILDEPTAGLD-----PMGVSEIMKLLVEMQK--ELGITIIIATHDIDIV  207 (275)
T ss_dssp             CSEEEEECTTTTCC-----HHHHHHHHHHHHHHHH--HHCCEEEEEESCCSSG
T ss_pred             CCEEEEECccccCC-----HHHHHHHHHHHHHHHh--hCCCEEEEEecCHHHH
Confidence            99999999743322     2333445555555531  1255677777766654

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=95.44  E-value=0.0057  Score=44.67  Aligned_cols=15  Identities=27%  Similarity=0.401  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.++
T Consensus         6 ~G~~GsGKsT~a~~L~   21 (168)
T 2pt5_A            6 IGFMCSGKSTVGSLLS   21 (168)
T ss_dssp             ESCTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999999

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=95.44  E-value=0.0052  Score=45.98  Aligned_cols=15  Identities=27%  Similarity=0.477  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|+.+|
T Consensus        18 ~G~~GsGKsT~a~~L~   33 (199)
T 2bwj_A           18 IGGPGSGKGTQCEKLV   33 (199)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=95.44  E-value=0.0056  Score=46.58  Aligned_cols=15  Identities=40%  Similarity=0.514  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++++|
T Consensus        31 ~G~sGsGKSTl~~~La   46 (200)
T 3uie_A           31 TGLSGSGKSTLACALN   46 (200)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=95.43  E-value=0.0056  Score=46.37  Aligned_cols=15  Identities=33%  Similarity=0.541  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|+.+|
T Consensus        26 ~G~~GsGKST~a~~La   41 (201)
T 2cdn_A           26 LGPPGAGKGTQAVKLA   41 (201)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=95.42  E-value=0.0035  Score=46.40  Aligned_cols=19  Identities=21%  Similarity=0.083  Sum_probs=11.9

Q ss_pred             cc-CCCcHHHHHHHHH-cccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDL   61 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l   61 (170)
                      .| ||+|||++|+.+| .++.
T Consensus        11 ~G~~GsGKST~a~~La~~l~~   31 (183)
T 2vli_A           11 NGPFGVGKTHTAHTLHERLPG   31 (183)
T ss_dssp             ECCC----CHHHHHHHHHSTT
T ss_pred             ECCCCCCHHHHHHHHHHhcCC
Confidence            49 9999999999999 4443

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=95.42  E-value=0.024  Score=44.21  Aligned_cols=43  Identities=7%  Similarity=0.149  Sum_probs=26.7

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYK  118 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~  118 (170)
                      ..+|++||+-....-   .-.....+++.+..-    +...-||+|+|.+
T Consensus       121 yDlvILDEi~~al~~---g~l~~~ev~~~l~~R----p~~~~vIlTGr~a  163 (196)
T 1g5t_A          121 LDMVVLDELTYMVAY---DYLPLEEVISALNAR----PGHQTVIITGRGC  163 (196)
T ss_dssp             CSEEEEETHHHHHHT---TSSCHHHHHHHHHTS----CTTCEEEEECSSC
T ss_pred             CCEEEEeCCCccccC---CCCCHHHHHHHHHhC----cCCCEEEEECCCC
Confidence            789999999543221   112234455555433    5678899999865

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=95.40  E-value=0.0059  Score=45.34  Aligned_cols=15  Identities=20%  Similarity=0.209  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| ||+|||++++.++
T Consensus         6 ~G~~GsGKsT~~~~L~   21 (195)
T 2pbr_A            6 EGIDGSGKTTQAKKLY   21 (195)
T ss_dssp             ECSTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999999

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=95.40  E-value=0.006  Score=45.04  Aligned_cols=15  Identities=33%  Similarity=0.505  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.++
T Consensus        14 ~G~~GsGKSTl~~~l~   29 (175)
T 1knq_A           14 MGVSGSGKSAVASEVA   29 (175)
T ss_dssp             ECSTTSCHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            49 9999999999999

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=95.40  E-value=0.0055  Score=45.38  Aligned_cols=15  Identities=33%  Similarity=0.550  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.++
T Consensus        12 ~G~~GsGKsT~~~~L~   27 (194)
T 1qf9_A           12 LGGPGSGKGTQCANIV   27 (194)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=95.38  E-value=0.025  Score=47.58  Aligned_cols=50  Identities=10%  Similarity=0.147  Sum_probs=29.6

Q ss_pred             CceeEeeechhhhccCC----c---------cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCC
Q 036857           68 SRSILVIEDAVTSFESN----A---------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDH  120 (170)
Q Consensus        68 ~p~il~iDEiD~~~~~~----~---------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~  120 (170)
                      .|.+|++|=+-.+....    .         .+.+.+++.|..|-++..  ..++.+|+ ||+...
T Consensus       111 ~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak--~~~i~vi~-tNQV~k  173 (333)
T 3io5_A          111 EKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFS--TKNIPCIA-INHTYE  173 (333)
T ss_dssp             CCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHH--HTTCEEEE-EEEC--
T ss_pred             CceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHH--HhCCEEEE-ECCeee
Confidence            38999999998887410    0         234566777766666654  24555554 455544

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=95.38  E-value=0.006  Score=46.39  Aligned_cols=15  Identities=27%  Similarity=0.490  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| ||+|||++++.++
T Consensus        35 ~G~~GsGKSTl~~~L~   50 (200)
T 4eun_A           35 MGVSGSGKTTIAHGVA   50 (200)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999998

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=95.35  E-value=0.025  Score=47.80  Aligned_cols=15  Identities=27%  Similarity=0.563  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .||||||+.|+||
T Consensus        47 lGpnGsGKSTLLr~ia   62 (355)
T 1z47_A           47 LGPSGSGKTTILRLIA   62 (355)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHh
Confidence            49 9999999999999

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=95.34  E-value=0.044  Score=47.20  Aligned_cols=61  Identities=10%  Similarity=0.044  Sum_probs=43.7

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEe---------CC---CCCCCCCCCCCCCccceEEE
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMT---------TD---YKDHIDPVPLRPSCMDMHFH  136 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~t---------TN---~~~~lD~AllRpgR~d~~i~  136 (170)
                      |.|+||||+|.+      .....+.|+..|+.-    +.++++++|         ||   .++.++|.++.  ||.. +.
T Consensus       296 ~~VliIDEa~~l------~~~a~~aLlk~lEe~----~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R~~~-~~  362 (456)
T 2c9o_A          296 PGVLFVDEVHML------DIECFTYLHRALESS----IAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLD--RVMI-IR  362 (456)
T ss_dssp             ECEEEEESGGGC------BHHHHHHHHHHTTST----TCCEEEEEECCSEEECBTTSSCEEETTCCHHHHT--TEEE-EE
T ss_pred             ceEEEEechhhc------CHHHHHHHHHHhhcc----CCCEEEEecCCccccccccccccccccCChhHHh--hcce-ee
Confidence            679999999987      345678888877654    234444444         32   27789998985  8877 58


Q ss_pred             cCCCCc
Q 036857          137 LSSHTF  142 (170)
Q Consensus       137 ~~~p~~  142 (170)
                      |+.++.
T Consensus       363 ~~~~~~  368 (456)
T 2c9o_A          363 TMLYTP  368 (456)
T ss_dssp             CCCCCH
T ss_pred             CCCCCH
Confidence            888887

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=95.34  E-value=0.0058  Score=46.26  Aligned_cols=15  Identities=27%  Similarity=0.284  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| ||+|||++++.++
T Consensus        16 ~G~~GsGKST~~~~L~   31 (212)
T 2wwf_A           16 EGLDRSGKSTQSKLLV   31 (212)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            39 9999999999999

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=95.25  E-value=0.007  Score=45.25  Aligned_cols=15  Identities=33%  Similarity=0.627  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.+|
T Consensus        19 ~G~~GsGKsT~~~~L~   34 (186)
T 2yvu_A           19 TGLPGSGKTTIATRLA   34 (186)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            49 9999999999998

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=95.25  E-value=0.026  Score=47.76  Aligned_cols=15  Identities=27%  Similarity=0.432  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .||||||+.|+||
T Consensus        35 lGpnGsGKSTLLr~ia   50 (359)
T 2yyz_A           35 LGPSGCGKTTTLLMLA   50 (359)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             EcCCCchHHHHHHHHH
Confidence            49 9999999999999

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=95.23  E-value=0.0071  Score=46.54  Aligned_cols=15  Identities=27%  Similarity=0.465  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.+|
T Consensus        10 ~G~~GsGKsT~a~~La   25 (220)
T 1aky_A           10 IGPPGAGKGTQAPNLQ   25 (220)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=95.21  E-value=0.0073  Score=46.19  Aligned_cols=15  Identities=27%  Similarity=0.388  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|+.+|
T Consensus         6 ~G~~GsGKsT~a~~L~   21 (216)
T 3dl0_A            6 MGLPGAGKGTQGERIV   21 (216)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999998

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=95.20  E-value=0.0073  Score=46.08  Aligned_cols=15  Identities=27%  Similarity=0.459  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|+.+|
T Consensus         6 ~G~~GsGKsT~a~~L~   21 (216)
T 3fb4_A            6 MGLPGAGKGTQAEQII   21 (216)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999998

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=95.20  E-value=0.0072  Score=48.19  Aligned_cols=15  Identities=40%  Similarity=0.554  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|+.++
T Consensus        10 ~G~pGSGKSTla~~La   25 (260)
T 3a4m_A           10 TGLPGVGKSTFSKNLA   25 (260)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            49 9999999999999

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=95.19  E-value=0.035  Score=47.83  Aligned_cols=45  Identities=11%  Similarity=0.037  Sum_probs=26.4

Q ss_pred             ceeEeeechhhhccCC---ccchHHHHHHHHHhhchhccCCCCeEEEEeC
Q 036857           69 RSILVIEDAVTSFESN---AYNSVALSALLKFVDGLWSSSGDGRILVMTT  115 (170)
Q Consensus        69 p~il~iDEiD~~~~~~---~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tT  115 (170)
                      +.+|++|++..+....   ......+..++..|-.+...  .++.||+++
T Consensus       314 ~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke--~~i~vi~~s  361 (454)
T 2r6a_A          314 LGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARE--LEVPVIALS  361 (454)
T ss_dssp             CCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHH--HTCCEEEEE
T ss_pred             CCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHH--hCCeEEEEe
Confidence            8899999999887532   12334556666666665432  244444443

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=95.13  E-value=0.0081  Score=44.96  Aligned_cols=15  Identities=33%  Similarity=0.328  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.++
T Consensus         8 ~G~~GaGKSTl~~~L~   23 (189)
T 2bdt_A            8 TGPAGVGKSTTCKRLA   23 (189)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHh
Confidence            39 9999999999998

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=95.10  E-value=0.008  Score=47.91  Aligned_cols=15  Identities=27%  Similarity=0.656  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|+++|
T Consensus         7 ~G~~GSGKSTla~~La   22 (253)
T 2ze6_A            7 YGPTCSGKTDMAIQIA   22 (253)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            59 9999999999999

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=95.10  E-value=0.0076  Score=46.66  Aligned_cols=15  Identities=27%  Similarity=0.578  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.+|
T Consensus        13 ~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A           13 MGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=95.08  E-value=0.0084  Score=45.48  Aligned_cols=18  Identities=28%  Similarity=0.414  Sum_probs=15.6

Q ss_pred             cc-CCCcHHHHHHHHHccc
Q 036857           43 WG-PYTGKSSLIAAMADLD   60 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA~~~   60 (170)
                      -| ||+|||++++.+|+++
T Consensus         8 ~G~~GsGKST~~~~La~lg   26 (206)
T 1jjv_A            8 TGGIGSGKTTIANLFTDLG   26 (206)
T ss_dssp             ECSTTSCHHHHHHHHHTTT
T ss_pred             ECCCCCCHHHHHHHHHHCC
Confidence            39 9999999999999543

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=95.08  E-value=0.0078  Score=45.55  Aligned_cols=15  Identities=27%  Similarity=0.277  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| ||+|||++++.++
T Consensus        15 ~G~~GsGKsT~~~~L~   30 (215)
T 1nn5_A           15 EGVDRAGKSTQSRKLV   30 (215)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999999

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=95.08  E-value=0.0078  Score=45.50  Aligned_cols=17  Identities=29%  Similarity=0.341  Sum_probs=15.1

Q ss_pred             cc-CCCcHHHHHHHHHcc
Q 036857           43 WG-PYTGKSSLIAAMADL   59 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA~~   59 (170)
                      .| ||+|||++++.+|++
T Consensus         7 ~G~~GsGKSTl~~~L~~~   24 (204)
T 2if2_A            7 TGNIGCGKSTVAQMFREL   24 (204)
T ss_dssp             EECTTSSHHHHHHHHHHT
T ss_pred             ECCCCcCHHHHHHHHHHC
Confidence            49 999999999999953

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=95.08  E-value=0.0084  Score=45.95  Aligned_cols=15  Identities=47%  Similarity=0.483  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+||||+++.++
T Consensus        11 ~G~~GsGKSTl~~~L~   26 (227)
T 1cke_A           11 DGPSGAGKGTLCKAMA   26 (227)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=95.05  E-value=0.035  Score=47.03  Aligned_cols=15  Identities=40%  Similarity=0.609  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .||||||+.|+||
T Consensus        35 lGpnGsGKSTLLr~ia   50 (362)
T 2it1_A           35 LGPSGSGKSTLLYTIA   50 (362)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCchHHHHHHHHh
Confidence            49 9999999999999

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=95.05  E-value=0.0086  Score=46.69  Aligned_cols=15  Identities=33%  Similarity=0.545  Sum_probs=14.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|+.+|
T Consensus        22 ~G~~GsGKsT~a~~La   37 (233)
T 1ak2_A           22 LGPPGAGKGTQAPKLA   37 (233)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999999

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=95.01  E-value=0.009  Score=45.12  Aligned_cols=19  Identities=26%  Similarity=0.506  Sum_probs=15.8

Q ss_pred             cc-CCCcHHHHHHHHH-cccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDL   61 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l   61 (170)
                      .| ||+|||++++.+| .+++
T Consensus        21 ~G~~GsGKsT~~~~L~~~~g~   41 (203)
T 1ukz_A           21 LGGPGAGKGTQCEKLVKDYSF   41 (203)
T ss_dssp             ECSTTSSHHHHHHHHHHHSSC
T ss_pred             ECCCCCCHHHHHHHHHHHcCc
Confidence            49 9999999999999 4443

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=95.00  E-value=0.0091  Score=44.88  Aligned_cols=15  Identities=20%  Similarity=0.266  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| ||+|||++++.+|
T Consensus        10 ~G~~GsGKsT~~~~L~   25 (204)
T 2v54_A           10 EGLDKSGKTTQCMNIM   25 (204)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            39 9999999999999

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=94.94  E-value=0.0089  Score=46.07  Aligned_cols=15  Identities=27%  Similarity=0.417  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.+|
T Consensus        11 ~G~~GsGKsT~a~~La   26 (217)
T 3be4_A           11 IGAPGSGKGTQCEFIK   26 (217)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=94.93  E-value=0.042  Score=45.39  Aligned_cols=15  Identities=27%  Similarity=0.419  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+||||+++.|+
T Consensus        86 vG~sGsGKSTLl~ll~  101 (306)
T 3nh6_A           86 VGPSGAGKSTILRLLF  101 (306)
T ss_dssp             ESSSCHHHHHHHHHHT
T ss_pred             ECCCCchHHHHHHHHH
Confidence            39 9999999999999

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=94.92  E-value=0.0091  Score=45.97  Aligned_cols=15  Identities=27%  Similarity=0.448  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.+|
T Consensus        11 ~G~~GsGKsT~~~~La   26 (222)
T 1zak_A           11 SGAPASGKGTQCELIK   26 (222)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=94.91  E-value=0.027  Score=47.10  Aligned_cols=15  Identities=40%  Similarity=0.578  Sum_probs=14.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++++.+|
T Consensus        11 ~GptGsGKTtla~~La   26 (323)
T 3crm_A           11 MGPTAAGKTDLAMALA   26 (323)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999999

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=94.90  E-value=0.0098  Score=46.65  Aligned_cols=15  Identities=33%  Similarity=0.612  Sum_probs=14.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+||||+++.||
T Consensus        33 ~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           33 LGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=94.83  E-value=0.0099  Score=45.57  Aligned_cols=15  Identities=27%  Similarity=0.481  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|+.+|
T Consensus         6 ~G~~GsGKsT~a~~L~   21 (214)
T 1e4v_A            6 LGAPVAGKGTQAQFIM   21 (214)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=94.83  E-value=0.028  Score=54.81  Aligned_cols=45  Identities=16%  Similarity=0.316  Sum_probs=28.1

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHID  122 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD  122 (170)
                      |.|+++||.=+-+...  .   -..+.+.++++.    .+..+|+.|++...+.
T Consensus       573 ~~IliLDE~tSaLD~~--t---e~~i~~~l~~~~----~~~T~iiiaHrls~i~  617 (1321)
T 4f4c_A          573 PKILLLDEATSALDAE--S---EGIVQQALDKAA----KGRTTIIIAHRLSTIR  617 (1321)
T ss_dssp             CSEEEEESTTTTSCTT--T---HHHHHHHHHHHH----TTSEEEEECSCTTTTT
T ss_pred             CCEEEEecccccCCHH--H---HHHHHHHHHHHh----CCCEEEEEcccHHHHH
Confidence            9999999985554422  1   234445566654    3566677778776553

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=94.80  E-value=0.011  Score=44.41  Aligned_cols=15  Identities=20%  Similarity=0.224  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.++
T Consensus        12 ~G~~GsGKSTl~~~L~   27 (207)
T 2j41_A           12 SGPSGVGKGTVRKRIF   27 (207)
T ss_dssp             ECSTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=94.75  E-value=0.0079  Score=47.68  Aligned_cols=15  Identities=20%  Similarity=0.224  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.++
T Consensus        38 ~G~~GsGKSTla~~L~   53 (253)
T 2p5t_B           38 GGQSGAGKTTIHRIKQ   53 (253)
T ss_dssp             ESCGGGTTHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=94.73  E-value=0.012  Score=43.67  Aligned_cols=15  Identities=27%  Similarity=0.388  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.++
T Consensus        11 ~G~~GsGKST~~~~L~   26 (179)
T 2pez_A           11 TGLSGAGKTTVSMALE   26 (179)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999999

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=94.72  E-value=0.024  Score=45.66  Aligned_cols=33  Identities=27%  Similarity=0.343  Sum_probs=22.8

Q ss_pred             cccccCChhhHHHhhcCc--------cc-CCCcHHHHHHHHH
Q 036857           25 SNTIATDFDMNKALVDDY--------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        25 ~~~v~~~~~~k~~l~~~~--------~G-PGtGKT~la~aiA   57 (170)
                      -+.+++-+...+++...+        +| +|+|||++++.++
T Consensus        11 ~~~~~gR~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~   52 (350)
T 2qen_A           11 REDIFDREEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFL   52 (350)
T ss_dssp             GGGSCSCHHHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred             hHhcCChHHHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHH
Confidence            344556555555443322        79 9999999999987

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=94.67  E-value=0.014  Score=52.15  Aligned_cols=31  Identities=29%  Similarity=0.192  Sum_probs=24.3

Q ss_pred             cccCChhhHHHhhcCc-------cc-CCCcHHHHHHHHH
Q 036857           27 TIATDFDMNKALVDDY-------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        27 ~v~~~~~~k~~l~~~~-------~G-PGtGKT~la~aiA   57 (170)
                      ...+.+++++.+...+       .| ||||||+++++++
T Consensus       187 ~~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~  225 (574)
T 3e1s_A          187 RKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVA  225 (574)
T ss_dssp             TTTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHH
Confidence            3456788887775543       59 9999999999998

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=94.65  E-value=0.011  Score=48.15  Aligned_cols=15  Identities=47%  Similarity=0.589  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|+.++
T Consensus        39 ~G~sGsGKSTla~~L~   54 (287)
T 1gvn_B           39 GGQPGSGKTSLRSAIF   54 (287)
T ss_dssp             ECCTTSCTHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999998

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=94.64  E-value=0.013  Score=45.53  Aligned_cols=15  Identities=20%  Similarity=0.271  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.+|
T Consensus         6 ~G~~GsGKsT~a~~La   21 (223)
T 2xb4_A            6 FGPNGSGKGTQGNLVK   21 (223)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=94.64  E-value=0.013  Score=44.43  Aligned_cols=15  Identities=33%  Similarity=0.632  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++++.++
T Consensus         6 ~G~nGsGKTTLl~~l~   21 (178)
T 1ye8_A            6 TGEPGVGKTTLVKKIV   21 (178)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.64  E-value=0.098  Score=45.83  Aligned_cols=51  Identities=24%  Similarity=0.279  Sum_probs=29.6

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHID  122 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD  122 (170)
                      |.+|++||.-......+........+.+.+..+..   .++.+|++|...+.++
T Consensus       139 ~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~---~g~tvl~itH~~~~~~  189 (525)
T 1tf7_A          139 ARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQ---IGATTVMTTERIEEYG  189 (525)
T ss_dssp             CSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHH---HTCEEEEEEECSSSSS
T ss_pred             CCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHH---CCCEEEEEecCCCCcc
Confidence            78888888866544211122333445555555543   3667788887777653

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=94.62  E-value=0.013  Score=47.12  Aligned_cols=16  Identities=31%  Similarity=0.455  Sum_probs=14.6

Q ss_pred             cc-CCCcHHHHHHHHHc
Q 036857           43 WG-PYTGKSSLIAAMAD   58 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA~   58 (170)
                      .| ||+|||++|+.+++
T Consensus         8 ~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            8 IGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49 99999999999993

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=94.55  E-value=0.014  Score=43.86  Aligned_cols=15  Identities=33%  Similarity=0.434  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| +|+||||+++.++
T Consensus        13 ~Gp~GsGKSTl~~~L~   28 (205)
T 3tr0_A           13 SAPSGAGKTSLVRALV   28 (205)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHH
Confidence            39 9999999999999

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=94.53  E-value=0.013  Score=43.84  Aligned_cols=16  Identities=31%  Similarity=0.343  Sum_probs=14.6

Q ss_pred             cc-CCCcHHHHHHHHHc
Q 036857           43 WG-PYTGKSSLIAAMAD   58 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA~   58 (170)
                      -| ||+|||++++.+|+
T Consensus        14 ~G~~GsGKST~~~~La~   30 (203)
T 1uf9_A           14 TGNIGSGKSTVAALLRS   30 (203)
T ss_dssp             EECTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49 99999999999993

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=94.50  E-value=0.015  Score=44.35  Aligned_cols=15  Identities=33%  Similarity=0.474  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.++
T Consensus        18 ~G~sGsGKsTl~~~L~   33 (204)
T 2qor_A           18 CGPSGVGKGTLIKKVL   33 (204)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999999

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=94.48  E-value=0.013  Score=44.86  Aligned_cols=15  Identities=47%  Similarity=0.651  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+||||+++.|+
T Consensus        28 ~G~sGsGKSTl~~~l~   43 (208)
T 3c8u_A           28 SGAPGSGKSTLSNPLA   43 (208)
T ss_dssp             ECCTTSCTHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=94.47  E-value=0.014  Score=44.36  Aligned_cols=16  Identities=25%  Similarity=0.457  Sum_probs=14.6

Q ss_pred             cc-CCCcHHHHHHHHHc
Q 036857           43 WG-PYTGKSSLIAAMAD   58 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA~   58 (170)
                      .| ||+|||++++.+++
T Consensus        27 ~G~~GsGKSTl~~~L~~   43 (207)
T 2qt1_A           27 SGVTNSGKTTLAKNLQK   43 (207)
T ss_dssp             EESTTSSHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49 99999999999993

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=94.46  E-value=0.038  Score=55.36  Aligned_cols=47  Identities=9%  Similarity=0.220  Sum_probs=33.8

Q ss_pred             ceeEeeechhhhccCCc-----------cchHHHHHHHHHhhchhccCCCCeEEEEeCCC
Q 036857           69 RSILVIEDAVTSFESNA-----------YNSVALSALLKFVDGLWSSSGDGRILVMTTDY  117 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~-----------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~  117 (170)
                      +++|++|-+..+.+..+           -+.+.+++.|..|.+....  .++.+|++.--
T Consensus      1510 ~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~--~~~~~i~~~~~ 1567 (1706)
T 3cmw_A         1510 VDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ--SNTLLIFINQI 1567 (1706)
T ss_dssp             CSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHH--HTCEEEEEECB
T ss_pred             CCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHh--CCcEEEEeecc
Confidence            99999999999987322           2456778878888777663  57777776443

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=94.43  E-value=0.015  Score=44.48  Aligned_cols=15  Identities=33%  Similarity=0.499  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.++
T Consensus        31 ~G~~GsGKsT~~~~l~   46 (211)
T 1m7g_A           31 TGLSASGKSTLAVELE   46 (211)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999998

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=94.42  E-value=0.016  Score=43.63  Aligned_cols=15  Identities=40%  Similarity=0.426  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| ||+|||++++.+|
T Consensus         8 ~G~~GsGKst~~~~la   23 (208)
T 3ake_A            8 DGPSASGKSSVARRVA   23 (208)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999999

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=94.39  E-value=0.073  Score=45.66  Aligned_cols=44  Identities=9%  Similarity=0.075  Sum_probs=25.1

Q ss_pred             ceeEeeechhhhccC--C---ccchHHHHHHHHHhhchhccCCCCeEEEEe
Q 036857           69 RSILVIEDAVTSFES--N---AYNSVALSALLKFVDGLWSSSGDGRILVMT  114 (170)
Q Consensus        69 p~il~iDEiD~~~~~--~---~~~~~~~~~ll~~lDg~~~~~~~~~~vi~t  114 (170)
                      +.+|+||.+..+...  .   ......++.+...|-.+...  .++.||++
T Consensus       311 ~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke--~~v~vi~l  359 (444)
T 2q6t_A          311 VGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARE--LGIPIIAL  359 (444)
T ss_dssp             CCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHH--HTSCEEEE
T ss_pred             CCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHH--hCCeEEEE
Confidence            789999999887653  1   12233456666666655442  24444443

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=94.38  E-value=0.016  Score=43.97  Aligned_cols=45  Identities=13%  Similarity=0.140  Sum_probs=25.0

Q ss_pred             ce--eEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCC
Q 036857           69 RS--ILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYK  118 (170)
Q Consensus        69 p~--il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~  118 (170)
                      |.  +|++||...+.......   ...+++.+..+..  ..++.++++|...
T Consensus       122 ~~~~llilDe~~~~~~~d~~~---~~~~~~~l~~~~~--~~~~~vi~~~h~~  168 (235)
T 2w0m_A          122 YGKARLVIDSVSALFLDKPAM---ARKISYYLKRVLN--KWNFTIYATSQYA  168 (235)
T ss_dssp             SSCEEEEEETGGGGSSSCGGG---HHHHHHHHHHHHH--HTTEEEEEEEC--
T ss_pred             CCceEEEEECchHhhcCCHHH---HHHHHHHHHHHHH--hCCCeEEEEeccC
Confidence            77  99999998876432222   3344444444432  2356667666544

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=94.38  E-value=0.033  Score=49.59  Aligned_cols=15  Identities=40%  Similarity=0.492  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+||||+++.++
T Consensus       373 vG~sGsGKSTll~~l~  388 (578)
T 4a82_A          373 VGMSGGGKSTLINLIP  388 (578)
T ss_dssp             ECSTTSSHHHHHTTTT
T ss_pred             ECCCCChHHHHHHHHh
Confidence            39 9999999999999

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=94.35  E-value=0.016  Score=43.81  Aligned_cols=15  Identities=27%  Similarity=0.476  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.+|
T Consensus        26 ~G~~GsGKTtl~~~l~   41 (220)
T 2cvh_A           26 YGPYASGKTTLALQTG   41 (220)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999997

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=94.26  E-value=0.016  Score=44.07  Aligned_cols=15  Identities=33%  Similarity=0.525  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++++.++
T Consensus        31 ~G~nGsGKSTll~~l~   46 (231)
T 4a74_A           31 FGEFGSGKTQLAHTLA   46 (231)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999998

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=94.16  E-value=0.018  Score=45.36  Aligned_cols=15  Identities=27%  Similarity=0.450  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|+.++
T Consensus        35 ~G~~GsGKsT~a~~L~   50 (243)
T 3tlx_A           35 LGAPGSGKGTQSLNLK   50 (243)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999999

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=94.16  E-value=0.018  Score=45.35  Aligned_cols=20  Identities=35%  Similarity=0.441  Sum_probs=16.5

Q ss_pred             cc-CCCcHHHHHHHHHc-cccc
Q 036857           43 WG-PYTGKSSLIAAMAD-LDLK   62 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA~-~~l~   62 (170)
                      -| ||+|||++|+.++. ++..
T Consensus        28 ~G~~GSGKST~a~~L~~~lg~~   49 (252)
T 1uj2_A           28 SGGTASGKSSVCAKIVQLLGQN   49 (252)
T ss_dssp             ECSTTSSHHHHHHHHHHHTTGG
T ss_pred             ECCCCCCHHHHHHHHHHHhhhh
Confidence            49 99999999999993 5543

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=94.16  E-value=0.011  Score=44.77  Aligned_cols=14  Identities=29%  Similarity=0.577  Sum_probs=13.7

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||+||||+++.++
T Consensus         7 G~~GsGKsTl~~~L~   21 (214)
T 1gtv_A            7 GVDGAGKRTLVEKLS   21 (214)
T ss_dssp             EEEEEEHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHH
Confidence            9 9999999999998

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=94.15  E-value=0.13  Score=37.19  Aligned_cols=15  Identities=40%  Similarity=0.488  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++.+++.
T Consensus        18 ~G~~~~GKSsli~~l~   33 (181)
T 2efe_B           18 LGDVGAGKSSLVLRFV   33 (181)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHH
Confidence            59 9999999999998

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=94.11  E-value=0.055  Score=48.34  Aligned_cols=15  Identities=20%  Similarity=0.465  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+|||++++.++
T Consensus       387 vG~sGsGKSTll~~l~  402 (598)
T 3qf4_B          387 VGPTGSGKTTIVNLLM  402 (598)
T ss_dssp             ECCTTSSTTHHHHHHT
T ss_pred             ECCCCCcHHHHHHHHh
Confidence            39 9999999999999

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=94.05  E-value=0.02  Score=43.95  Aligned_cols=15  Identities=33%  Similarity=0.563  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||+|||++++.+|
T Consensus        30 ~G~~GsGKTtl~~~l~   45 (243)
T 1n0w_A           30 FGEFRTGKTQICHTLA   45 (243)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHH
Confidence            59 9999999999998

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=94.02  E-value=0.021  Score=43.70  Aligned_cols=18  Identities=44%  Similarity=0.508  Sum_probs=15.6

Q ss_pred             cc-CCCcHHHHHHHHHccc
Q 036857           43 WG-PYTGKSSLIAAMADLD   60 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA~~~   60 (170)
                      -| ||+|||++++.+++++
T Consensus        10 ~G~~GSGKST~~~~L~~lg   28 (218)
T 1vht_A           10 TGGIGSGKSTVANAFADLG   28 (218)
T ss_dssp             ECCTTSCHHHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHHHcC
Confidence            39 9999999999999543

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=94.01  E-value=0.021  Score=43.89  Aligned_cols=15  Identities=33%  Similarity=0.457  Sum_probs=14.2

Q ss_pred             c-CCCcHHHHHHHHHc
Q 036857           44 G-PYTGKSSLIAAMAD   58 (170)
Q Consensus        44 G-PGtGKT~la~aiA~   58 (170)
                      | ||+|||++++.+++
T Consensus        19 G~~GSGKSTva~~L~~   34 (192)
T 2grj_A           19 GKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CSTTSSHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            9 99999999999993

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=93.97  E-value=0.022  Score=42.60  Aligned_cols=15  Identities=13%  Similarity=0.284  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++++.++
T Consensus        11 ~GpsGsGKSTL~~~L~   26 (180)
T 1kgd_A           11 LGAHGVGRRHIKNTLI   26 (180)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999999

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=93.91  E-value=0.021  Score=44.43  Aligned_cols=15  Identities=33%  Similarity=0.525  Sum_probs=14.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+||+|.|+.||
T Consensus         6 ~GpPGsGKgTqa~~La   21 (206)
T 3sr0_A            6 LGPPGAGKGTQAKRLA   21 (206)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999999

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=93.89  E-value=0.024  Score=50.89  Aligned_cols=29  Identities=24%  Similarity=0.210  Sum_probs=22.1

Q ss_pred             cCChhhHHHhhcCc-------cc-CCCcHHHHHHHHH
Q 036857           29 ATDFDMNKALVDDY-------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        29 ~~~~~~k~~l~~~~-------~G-PGtGKT~la~aiA   57 (170)
                      .+++.+++.+...+       +| ||||||+++..++
T Consensus       180 ~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i  216 (624)
T 2gk6_A          180 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIV  216 (624)
T ss_dssp             CCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHH
Confidence            46778887765433       79 9999999887776

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=93.82  E-value=0.022  Score=43.14  Aligned_cols=16  Identities=38%  Similarity=0.532  Sum_probs=14.5

Q ss_pred             cc-CCCcHHHHHHHHHc
Q 036857           43 WG-PYTGKSSLIAAMAD   58 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA~   58 (170)
                      -| +|+||||+++.+++
T Consensus        12 ~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A           12 AGGTASGKTTLAQALAR   28 (211)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            39 99999999999993

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=93.71  E-value=0.034  Score=49.68  Aligned_cols=15  Identities=33%  Similarity=0.552  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+|||++++.++
T Consensus       375 vG~sGsGKSTll~~l~  390 (587)
T 3qf4_A          375 LGETGSGKSTLMNLIP  390 (587)
T ss_dssp             ECSSSSSHHHHHHTTT
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            39 9999999999999

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=93.52  E-value=0.028  Score=45.04  Aligned_cols=15  Identities=33%  Similarity=0.328  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.+|
T Consensus        54 ~G~~GsGKSTl~~~La   69 (250)
T 3nwj_A           54 VGMMGSGKTTVGKIMA   69 (250)
T ss_dssp             ECSTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=93.47  E-value=0.029  Score=44.42  Aligned_cols=15  Identities=40%  Similarity=0.450  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| +|+|||++++.+|
T Consensus        33 ~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           33 DGPSGAGKGTLCKALA   48 (252)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999999

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=93.45  E-value=0.028  Score=42.74  Aligned_cols=15  Identities=27%  Similarity=0.466  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++++.++
T Consensus        28 ~G~~GsGKstl~~~l~   43 (201)
T 1rz3_A           28 DGLSRSGKTTLANQLS   43 (201)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999998

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=93.38  E-value=0.029  Score=44.15  Aligned_cols=21  Identities=19%  Similarity=0.455  Sum_probs=16.8

Q ss_pred             cc-CCCcHHHHHHHHH-cccccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDLKE   63 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l~~   63 (170)
                      .| ||+||+|.|+.|| ..++..
T Consensus        35 lGpPGsGKgTqa~~L~~~~g~~h   57 (217)
T 3umf_A           35 LGGPGSGKGTQCEKLVQKFHFNH   57 (217)
T ss_dssp             ECCTTCCHHHHHHHHHHHHCCEE
T ss_pred             ECCCCCCHHHHHHHHHHHHCCce
Confidence            59 9999999999999 444433

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=93.38  E-value=0.072  Score=51.99  Aligned_cols=44  Identities=14%  Similarity=0.342  Sum_probs=26.4

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHI  121 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~l  121 (170)
                      |.||++||.=+-..     ..+-..+.+.++...    .+..+|+-|.+.+.+
T Consensus      1236 ~~ILiLDEaTSaLD-----~~tE~~Iq~~l~~~~----~~~TvI~IAHRLsTi 1279 (1321)
T 4f4c_A         1236 PKILLLDEATSALD-----TESEKVVQEALDRAR----EGRTCIVIAHRLNTV 1279 (1321)
T ss_dssp             CSEEEEESCCCSTT-----SHHHHHHHHHHTTTS----SSSEEEEECSSSSTT
T ss_pred             CCEEEEeCccccCC-----HHHHHHHHHHHHHHc----CCCEEEEeccCHHHH
Confidence            89999999844332     122234455566553    356666667776654

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=93.35  E-value=0.029  Score=45.33  Aligned_cols=17  Identities=35%  Similarity=0.472  Sum_probs=15.0

Q ss_pred             cc-CCCcHHHHHHHHHcc
Q 036857           43 WG-PYTGKSSLIAAMADL   59 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA~~   59 (170)
                      -| ||+|||++|+.++.+
T Consensus        81 ~G~~GSGKSTva~~La~l   98 (281)
T 2f6r_A           81 TGISGSGKSSVAQRLKNL   98 (281)
T ss_dssp             EECTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHC
Confidence            49 999999999999943

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=93.33  E-value=0.033  Score=42.67  Aligned_cols=15  Identities=27%  Similarity=0.279  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++++.++
T Consensus        14 ~GpsGsGKsTl~~~L~   29 (208)
T 3tau_A           14 SGPSGVGKGTVREAVF   29 (208)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHH
Confidence            49 9999999999999

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=93.27  E-value=0.046  Score=47.89  Aligned_cols=36  Identities=25%  Similarity=0.279  Sum_probs=24.9

Q ss_pred             CCCcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH
Q 036857           22 PATSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        22 p~~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA   57 (170)
                      |......++-+...++|...+            +| +|+|||++|+.++
T Consensus       120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~  168 (591)
T 1z6t_A          120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAV  168 (591)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHH
Confidence            344455666666655554332            79 9999999999886

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=93.26  E-value=0.031  Score=44.92  Aligned_cols=15  Identities=27%  Similarity=0.266  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.+|
T Consensus        41 ~G~~G~GKTTl~~~ia   56 (296)
T 1cr0_A           41 TSGSGMGKSTFVRQQA   56 (296)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHH
Confidence            49 9999999999999

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=93.24  E-value=0.034  Score=44.32  Aligned_cols=15  Identities=47%  Similarity=0.435  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.+|
T Consensus        15 ~G~~GsGKsTla~~la   30 (233)
T 3r20_A           15 DGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=93.22  E-value=0.29  Score=36.36  Aligned_cols=15  Identities=33%  Similarity=0.468  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+++.++.
T Consensus        14 ~G~~~~GKSsli~~l~   29 (206)
T 2bcg_Y           14 IGNSGVGKSCLLLRFS   29 (206)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999998

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=93.17  E-value=0.036  Score=42.30  Aligned_cols=15  Identities=27%  Similarity=0.490  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||+++++|+
T Consensus        26 ~GpnGsGKSTLl~~l~   41 (207)
T 1znw_A           26 SGPSAVGKSTVVRCLR   41 (207)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=93.15  E-value=0.033  Score=42.74  Aligned_cols=15  Identities=33%  Similarity=0.425  Sum_probs=13.7

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+++..+|
T Consensus        29 ~G~~GsGKTtl~~~~~   44 (247)
T 2dr3_A           29 SGGPGTGKTIFSQQFL   44 (247)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999998887

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=93.10  E-value=0.11  Score=46.10  Aligned_cols=15  Identities=27%  Similarity=0.454  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+||||+++.++
T Consensus       375 vG~sGsGKSTLl~~l~  390 (582)
T 3b60_A          375 VGRSGSGKSTIASLIT  390 (582)
T ss_dssp             EECTTSSHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            39 9999999999999

>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A

Probab=93.05  E-value=0.04  Score=51.26  Aligned_cols=29  Identities=24%  Similarity=0.210  Sum_probs=22.1

Q ss_pred             cCChhhHHHhhcCc-------cc-CCCcHHHHHHHHH
Q 036857           29 ATDFDMNKALVDDY-------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        29 ~~~~~~k~~l~~~~-------~G-PGtGKT~la~aiA   57 (170)
                      .+++.+++.+...+       +| ||||||+++..++
T Consensus       356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i  392 (800)
T 2wjy_A          356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIV  392 (800)
T ss_dssp             CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHH
Confidence            46778877665533       69 9999999887776

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=92.93  E-value=0.12  Score=40.18  Aligned_cols=15  Identities=40%  Similarity=0.583  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||+|+..+.
T Consensus        19 vGd~~VGKTsLi~r~~   34 (216)
T 4dkx_A           19 LGEQSVGKTSLITRFM   34 (216)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECcCCcCHHHHHHHHH
Confidence            49 9999999999998

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=92.91  E-value=0.039  Score=46.89  Aligned_cols=15  Identities=33%  Similarity=0.620  Sum_probs=14.5

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||+|||++++++|
T Consensus        30 ~G~~G~GKTTl~~~la   45 (359)
T 2ga8_A           30 VGSPGSGKSTIAEELC   45 (359)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHH
Confidence            69 9999999999999

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=92.85  E-value=0.042  Score=43.11  Aligned_cols=14  Identities=29%  Similarity=0.508  Sum_probs=13.8

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||+|||++++.++
T Consensus        33 G~~GsGKsT~~~~l~   47 (229)
T 4eaq_A           33 GPEGSGKTTVINEVY   47 (229)
T ss_dssp             CCTTSCHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHH
Confidence            9 9999999999999

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=92.76  E-value=0.045  Score=42.60  Aligned_cols=15  Identities=33%  Similarity=0.435  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.+|
T Consensus        22 ~G~~gsGKst~~~~l~   37 (236)
T 1q3t_A           22 DGPASSGKSTVAKIIA   37 (236)
T ss_dssp             ECSSCSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=92.76  E-value=0.038  Score=47.20  Aligned_cols=15  Identities=40%  Similarity=0.556  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|+.++
T Consensus       264 ~G~pGSGKSTla~~L~  279 (416)
T 3zvl_A          264 VGFPGAGKSTFIQEHL  279 (416)
T ss_dssp             ESCTTSSHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999998

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=92.73  E-value=0.24  Score=36.20  Aligned_cols=15  Identities=40%  Similarity=0.496  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++++.
T Consensus        22 ~G~~~~GKSsli~~l~   37 (196)
T 3tkl_A           22 IGDSGVGKSCLLLRFA   37 (196)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHH
Confidence            59 9999999999998

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=92.56  E-value=0.049  Score=41.46  Aligned_cols=15  Identities=33%  Similarity=0.415  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.+|
T Consensus         9 ~G~~gsGkst~~~~l~   24 (219)
T 2h92_A            9 DGPAAAGKSTIAKRVA   24 (219)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=92.44  E-value=0.051  Score=42.59  Aligned_cols=15  Identities=27%  Similarity=0.541  Sum_probs=14.1

Q ss_pred             c-CCCcHHHHHHHHHc
Q 036857           44 G-PYTGKSSLIAAMAD   58 (170)
Q Consensus        44 G-PGtGKT~la~aiA~   58 (170)
                      | .|+||||+++.+++
T Consensus        32 G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           32 GGTASGKSTVCEKIME   47 (245)
T ss_dssp             CSTTSSHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            9 99999999999993

>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=92.38  E-value=0.059  Score=50.07  Aligned_cols=29  Identities=24%  Similarity=0.261  Sum_probs=22.1

Q ss_pred             cCChhhHHHhhcCc-------cc-CCCcHHHHHHHHH
Q 036857           29 ATDFDMNKALVDDY-------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        29 ~~~~~~k~~l~~~~-------~G-PGtGKT~la~aiA   57 (170)
                      .+++.+++.+...+       +| ||||||+++..++
T Consensus       360 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i  396 (802)
T 2xzl_A          360 QLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIV  396 (802)
T ss_dssp             CCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH
Confidence            46788888776543       69 9999999876665

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=92.35  E-value=0.049  Score=48.08  Aligned_cols=15  Identities=27%  Similarity=0.494  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|+.+|
T Consensus        41 vGlpGSGKSTia~~La   56 (520)
T 2axn_A           41 VGLPARGKTYISKKLT   56 (520)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=92.31  E-value=0.25  Score=43.74  Aligned_cols=15  Identities=20%  Similarity=0.355  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+|||+++++|+
T Consensus       300 ~G~nGsGKSTLl~~l~  315 (538)
T 3ozx_A          300 LGPNGIGKTTFARILV  315 (538)
T ss_dssp             ECCTTSSHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            39 9999999999999

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=92.31  E-value=0.05  Score=42.36  Aligned_cols=15  Identities=27%  Similarity=0.399  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++++.++
T Consensus         8 ~G~~g~GKtt~~~~l~   23 (241)
T 2ocp_A            8 EGNIAVGKSTFVKLLT   23 (241)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            49 9999999999999

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=92.31  E-value=0.049  Score=44.75  Aligned_cols=44  Identities=14%  Similarity=0.233  Sum_probs=26.3

Q ss_pred             ceeEeeechhhhccC-----Cccc--hHHHHHHHHHhhchhccCCCCeEEEEe
Q 036857           69 RSILVIEDAVTSFES-----NAYN--SVALSALLKFVDGLWSSSGDGRILVMT  114 (170)
Q Consensus        69 p~il~iDEiD~~~~~-----~~~~--~~~~~~ll~~lDg~~~~~~~~~~vi~t  114 (170)
                      +.+|++|.+..+...     ....  ...+++++..|..+...  .++.||++
T Consensus       204 ~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~--~~~~Vi~~  254 (324)
T 2z43_A          204 IKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEV--YDIAVIIT  254 (324)
T ss_dssp             EEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHH--HTCEEEEE
T ss_pred             CCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHH--hCCEEEEE
Confidence            778999999887641     1111  23466777777766542  35555554

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=92.24  E-value=0.054  Score=44.69  Aligned_cols=15  Identities=27%  Similarity=0.279  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| +|+||||+++.|+
T Consensus        96 ~G~sGsGKSTL~~~L~  111 (312)
T 3aez_A           96 AGSVAVGKSTTARVLQ  111 (312)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             ECCCCchHHHHHHHHH
Confidence            49 9999999999999

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=92.20  E-value=0.057  Score=43.04  Aligned_cols=15  Identities=27%  Similarity=0.421  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+.|+.||
T Consensus        14 ~G~pGsGKsT~a~~L~   29 (230)
T 3gmt_A           14 LGAPGAGKGTQANFIK   29 (230)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=92.15  E-value=0.053  Score=44.23  Aligned_cols=15  Identities=20%  Similarity=0.259  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||+|||++|..+|
T Consensus       104 ~G~~gsGKT~la~~la  119 (322)
T 2i1q_A          104 AGVFGSGKTQIMHQSC  119 (322)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            69 9999999999888

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=92.13  E-value=0.076  Score=46.65  Aligned_cols=15  Identities=27%  Similarity=0.348  Sum_probs=14.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      || +|+|||++|+.++
T Consensus       158 ~G~gGvGKTtLA~~v~  173 (549)
T 2a5y_B          158 HGRAGSGKSVIASQAL  173 (549)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            89 9999999999998

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=92.11  E-value=0.057  Score=44.07  Aligned_cols=15  Identities=27%  Similarity=0.135  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| +|+|||++++.|+
T Consensus        37 ~G~sGsGKSTla~~L~   52 (290)
T 1odf_A           37 SGPQGSGKSFTSIQIY   52 (290)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999998

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=92.09  E-value=0.057  Score=39.87  Aligned_cols=15  Identities=27%  Similarity=0.510  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|.+.++
T Consensus         8 vG~~gvGKStLl~~l~   23 (184)
T 2zej_A            8 VGNTGSGKTTLLQQLM   23 (184)
T ss_dssp             ESCTTSSHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999998

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=92.08  E-value=0.06  Score=41.64  Aligned_cols=16  Identities=31%  Similarity=0.515  Sum_probs=14.6

Q ss_pred             cc-CCCcHHHHHHHHHc
Q 036857           43 WG-PYTGKSSLIAAMAD   58 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA~   58 (170)
                      .| +|+|||++++.+++
T Consensus        29 vGpsGsGKSTLl~~L~g   45 (218)
T 1z6g_A           29 CGPSGVGKGTLIKKLLN   45 (218)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHh
Confidence            49 99999999999993

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=92.07  E-value=0.058  Score=44.82  Aligned_cols=15  Identities=33%  Similarity=0.532  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||+|||+++..+|
T Consensus       128 ~G~~GsGKTtla~~la  143 (343)
T 1v5w_A          128 FGEFRTGKTQLSHTLC  143 (343)
T ss_dssp             ECCTTCTHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            69 9999999999988

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=92.04  E-value=0.065  Score=37.92  Aligned_cols=15  Identities=47%  Similarity=0.669  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||+++++++
T Consensus         7 ~G~~~~GKSsli~~l~   22 (161)
T 2dyk_A            7 VGRPNVGKSSLFNRLL   22 (161)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999998

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=92.01  E-value=0.06  Score=44.86  Aligned_cols=14  Identities=29%  Similarity=0.356  Sum_probs=13.6

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | +|+||||+++.++
T Consensus        99 GpsGSGKSTl~~~L~  113 (321)
T 3tqc_A           99 GSVAVGKSTTSRVLK  113 (321)
T ss_dssp             CCTTSSHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHH
Confidence            9 9999999999998

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=92.00  E-value=0.033  Score=44.11  Aligned_cols=15  Identities=27%  Similarity=0.401  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| +|+|||++++.++
T Consensus        30 eG~~GsGKST~~~~L~   45 (263)
T 1p5z_B           30 EGNIAAGKSTFVNILK   45 (263)
T ss_dssp             ECSTTSSHHHHHTTTG
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999999

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=91.98  E-value=0.058  Score=46.61  Aligned_cols=15  Identities=27%  Similarity=0.494  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.+|
T Consensus        45 vGlpGsGKSTia~~La   60 (469)
T 1bif_A           45 VGLPARGKTYISKKLT   60 (469)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=91.94  E-value=0.057  Score=45.11  Aligned_cols=15  Identities=33%  Similarity=0.525  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||+|||++++.++
T Consensus       137 ~G~~GsGKTTL~~~l~  152 (349)
T 1pzn_A          137 FGEFGSGKTQLAHTLA  152 (349)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            69 9999999999998

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=91.94  E-value=0.067  Score=38.75  Aligned_cols=15  Identities=40%  Similarity=0.751  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++.++++
T Consensus         9 vG~~gvGKStL~~~l~   24 (165)
T 2wji_A            9 IGNPNVGKSTIFNALT   24 (165)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999998

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=91.88  E-value=0.064  Score=37.78  Aligned_cols=15  Identities=33%  Similarity=0.355  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++++++.
T Consensus         9 ~G~~~~GKssl~~~l~   24 (166)
T 2ce2_X            9 VGAGGVGKSALTIQLI   24 (166)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999998

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=91.86  E-value=0.041  Score=42.55  Aligned_cols=17  Identities=12%  Similarity=0.131  Sum_probs=10.1

Q ss_pred             cc-CCCcHHHHHHHHH-cc
Q 036857           43 WG-PYTGKSSLIAAMA-DL   59 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~   59 (170)
                      -| +|+|||++++.++ +.
T Consensus        33 ~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           33 SSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             ECSCC----CHHHHHHC--
T ss_pred             ECCCCCCHHHHHHHHHhcC
Confidence            39 9999999999998 54

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=91.81  E-value=0.068  Score=40.64  Aligned_cols=15  Identities=33%  Similarity=0.452  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++++.++
T Consensus        10 vGpsGaGKSTLl~~L~   25 (198)
T 1lvg_A           10 SGPSGAGKSTLLKKLF   25 (198)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999998

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=91.81  E-value=0.071  Score=38.27  Aligned_cols=15  Identities=47%  Similarity=0.669  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++++.
T Consensus        10 ~G~~~vGKSsl~~~l~   25 (175)
T 2nzj_A           10 LGDPGVGKTSLASLFA   25 (175)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCccHHHHHHHHh
Confidence            49 9999999999998

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=91.80  E-value=0.071  Score=37.89  Aligned_cols=15  Identities=40%  Similarity=0.461  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++++.
T Consensus        11 ~G~~~~GKssl~~~l~   26 (168)
T 1z2a_A           11 VGNGAVGKSSMIQRYC   26 (168)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHH
Confidence            59 9999999999998

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=91.76  E-value=0.066  Score=43.89  Aligned_cols=15  Identities=27%  Similarity=0.343  Sum_probs=13.9

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+++..+|
T Consensus        74 ~G~pG~GKTtl~l~ia   89 (315)
T 3bh0_A           74 AARPSMGKTAFALKQA   89 (315)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHH
Confidence            49 9999999999998

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=91.69  E-value=0.071  Score=40.74  Aligned_cols=15  Identities=40%  Similarity=0.594  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++++.++
T Consensus         7 ~G~nG~GKTTll~~l~   22 (189)
T 2i3b_A            7 TGPPGVGKTTLIHKAS   22 (189)
T ss_dssp             ESCCSSCHHHHHHHHH
T ss_pred             ECCCCChHHHHHHHHH
Confidence            49 9999999999999

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=91.65  E-value=0.068  Score=39.88  Aligned_cols=15  Identities=33%  Similarity=0.525  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++.+.++
T Consensus        35 vG~~g~GKSTLl~~l~   50 (191)
T 1oix_A           35 IGDSGVGKSNLLSRFT   50 (191)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHh
Confidence            49 9999999999999

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=91.65  E-value=0.074  Score=39.74  Aligned_cols=15  Identities=33%  Similarity=0.525  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++.++++
T Consensus        11 vG~~g~GKSTLl~~l~   26 (199)
T 2f9l_A           11 IGDSGVGKSNLLSRFT   26 (199)
T ss_dssp             ESSTTSSHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHh
Confidence            49 9999999999999

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=91.60  E-value=0.077  Score=37.51  Aligned_cols=15  Identities=33%  Similarity=0.322  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++++.
T Consensus        10 ~G~~~~GKssl~~~l~   25 (168)
T 1u8z_A           10 VGSGGVGKSALTLQFM   25 (168)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999998

>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A

Probab=91.59  E-value=0.84  Score=37.30  Aligned_cols=36  Identities=11%  Similarity=0.027  Sum_probs=23.2

Q ss_pred             CCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHH
Q 036857           19 FEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIA   54 (170)
Q Consensus        19 ~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~   54 (170)
                      ..+..+|+++.+++.+.+.+...=                       .+ .|+|||..+-
T Consensus        17 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~   76 (400)
T 1s2m_A           17 NTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFV   76 (400)
T ss_dssp             ----CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHH
T ss_pred             ccccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHH
Confidence            334457888888888777765321                       37 9999997543

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*

Probab=91.59  E-value=0.21  Score=44.88  Aligned_cols=66  Identities=9%  Similarity=0.097  Sum_probs=39.0

Q ss_pred             eeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC--CCCCCCCCCCccceEEEcCCCCc
Q 036857           70 SILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD--HIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus        70 ~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~--~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      .+|+|||+..++....   ......+..+-..-  ..-++.+|++|.++.  .|+..+.  .-|..+|-|...+.
T Consensus       345 ivvVIDE~~~L~~~~~---~~~~~~L~~Iar~G--Ra~GIhLIlaTQRPs~d~I~~~Ir--an~~~RI~lrv~s~  412 (574)
T 2iut_A          345 IVVVVDEFADMMMIVG---KKVEELIARIAQKA--RAAGIHLILATQRPSVDVITGLIK--ANIPTRIAFQVSSK  412 (574)
T ss_dssp             EEEEESCCTTHHHHTC---HHHHHHHHHHHHHC--TTTTEEEEEEESCCCTTTSCHHHH--HTCCEEEEECCSCH
T ss_pred             EEEEEeCHHHHhhhhh---HHHHHHHHHHHHHH--hhCCeEEEEEecCcccccccHHHH--hhhccEEEEEcCCH
Confidence            5899999988875221   12223333332221  135888899888887  6776554  24556666665544

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=91.49  E-value=0.08  Score=37.82  Aligned_cols=15  Identities=33%  Similarity=0.452  Sum_probs=13.9

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++++.
T Consensus         8 vG~~~~GKSsli~~l~   23 (169)
T 3q85_A            8 VGESGVGKSTLAGTFG   23 (169)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999996

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=91.49  E-value=0.069  Score=43.60  Aligned_cols=15  Identities=27%  Similarity=0.279  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| +|+||||+++.++
T Consensus        86 ~G~~GsGKSTl~~~L~  101 (308)
T 1sq5_A           86 AGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999998

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=91.49  E-value=0.072  Score=47.19  Aligned_cols=14  Identities=14%  Similarity=0.124  Sum_probs=13.9

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||+|||++++++|
T Consensus       402 GlsGsGKSTIa~~La  416 (511)
T 1g8f_A          402 NSLTVSREQLSIALL  416 (511)
T ss_dssp             TTCCSCHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHH
Confidence            9 9999999999999

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=91.46  E-value=0.072  Score=44.38  Aligned_cols=15  Identities=40%  Similarity=0.614  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||||++.|+
T Consensus       176 vG~nGsGKSTLlk~L~  191 (365)
T 1lw7_A          176 LGGESSGKSVLVNKLA  191 (365)
T ss_dssp             ECCTTSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=91.45  E-value=0.082  Score=37.33  Aligned_cols=15  Identities=33%  Similarity=0.410  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++..++.
T Consensus         9 ~G~~~~GKSsli~~l~   24 (167)
T 1kao_A            9 LGSGGVGKSALTVQFV   24 (167)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999998

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=91.37  E-value=0.084  Score=37.45  Aligned_cols=15  Identities=33%  Similarity=0.410  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++.+++.
T Consensus         9 ~G~~~~GKssli~~l~   24 (167)
T 1c1y_A            9 LGSGGVGKSALTVQFV   24 (167)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999998

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=91.35  E-value=0.12  Score=50.43  Aligned_cols=15  Identities=33%  Similarity=0.399  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+|||++++.++
T Consensus       422 vG~sGsGKSTl~~ll~  437 (1284)
T 3g5u_A          422 VGNSGCGKSTTVQLMQ  437 (1284)
T ss_dssp             ECCSSSSHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            39 9999999999998

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=91.30  E-value=0.086  Score=37.49  Aligned_cols=15  Identities=40%  Similarity=0.574  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++.+++.
T Consensus         9 ~G~~~~GKssli~~l~   24 (172)
T 2erx_A            9 FGAGGVGKSSLVLRFV   24 (172)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999998

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=91.24  E-value=0.083  Score=41.12  Aligned_cols=15  Identities=27%  Similarity=0.459  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| +|+|||+++..+|
T Consensus        20 ~GkgGvGKTTl~~~La   35 (262)
T 1yrb_A           20 VGTAGSGKTTLTGEFG   35 (262)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHH
Confidence            39 9999999999998

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=91.23  E-value=0.29  Score=46.22  Aligned_cols=15  Identities=47%  Similarity=0.501  Sum_probs=13.8

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| -|+|||++.|.++
T Consensus       679 tGPNGaGKSTlLr~i~  694 (918)
T 3thx_B          679 TGPNMGGKSSYIKQVA  694 (918)
T ss_dssp             ESCCCHHHHHHHHHHH
T ss_pred             ECCCCCchHHHHHHHH
Confidence            39 8999999999998

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=91.21  E-value=0.078  Score=47.53  Aligned_cols=15  Identities=40%  Similarity=0.614  Sum_probs=12.7

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||||||+++.++.
T Consensus       170 ~G~pGTGKTt~l~~ll  185 (608)
T 1w36_D          170 SGGPGTGKTTTVAKLL  185 (608)
T ss_dssp             ECCTTSTHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHH
Confidence            59 9999999887765

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=91.18  E-value=0.079  Score=37.75  Aligned_cols=15  Identities=40%  Similarity=0.589  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++.+++.
T Consensus         8 vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            8 LGAPGVGKSALARIFG   23 (166)
T ss_dssp             EESTTSSHHHHHHHHC
T ss_pred             ECCCCCCHHHHHHHHc
Confidence            49 9999999999997

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=91.12  E-value=0.44  Score=45.09  Aligned_cols=15  Identities=33%  Similarity=0.390  Sum_probs=13.7

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| -|+|||++.|.+|
T Consensus       668 tGpNGsGKSTlLr~ia  683 (934)
T 3thx_A          668 TGPNMGGKSTYIRQTG  683 (934)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999995

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=91.05  E-value=0.093  Score=38.33  Aligned_cols=15  Identities=40%  Similarity=0.751  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++.++++
T Consensus        13 vG~~gvGKStL~~~l~   28 (188)
T 2wjg_A           13 IGNPNVGKSTIFNALT   28 (188)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999998

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=91.01  E-value=0.096  Score=37.34  Aligned_cols=15  Identities=33%  Similarity=0.510  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++.+++.
T Consensus        12 ~G~~~~GKssli~~l~   27 (170)
T 1z08_A           12 LGEGCVGKTSLVLRYC   27 (170)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHH
Confidence            59 9999999999998

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=91.00  E-value=0.096  Score=37.16  Aligned_cols=15  Identities=40%  Similarity=0.563  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++..++.
T Consensus        12 ~G~~~~GKssli~~l~   27 (170)
T 1r2q_A           12 LGESAVGKSSLVLRFV   27 (170)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999998

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=90.98  E-value=0.097  Score=37.24  Aligned_cols=15  Identities=33%  Similarity=0.423  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++.+++.
T Consensus        12 ~G~~~~GKSsli~~l~   27 (170)
T 1z0j_A           12 LGDTGVGKSSIMWRFV   27 (170)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHH
Confidence            49 9999999999998

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=90.98  E-value=0.097  Score=37.15  Aligned_cols=15  Identities=33%  Similarity=0.534  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++.+++.
T Consensus         9 ~G~~~~GKssli~~l~   24 (170)
T 1ek0_A            9 LGEAAVGKSSIVLRFV   24 (170)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999998

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=90.93  E-value=0.098  Score=37.65  Aligned_cols=15  Identities=40%  Similarity=0.445  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++.+++.
T Consensus        13 ~G~~~~GKSsli~~l~   28 (177)
T 1wms_A           13 LGDGGVGKSSLMNRYV   28 (177)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999998

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=90.91  E-value=0.09  Score=38.51  Aligned_cols=15  Identities=60%  Similarity=0.846  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++.++++
T Consensus        10 vG~~g~GKStLl~~l~   25 (172)
T 2gj8_A           10 AGRPNAGKSSLLNALA   25 (172)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999999

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=90.88  E-value=0.099  Score=37.65  Aligned_cols=15  Identities=40%  Similarity=0.570  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++++.
T Consensus        12 ~G~~~~GKssl~~~l~   27 (178)
T 2hxs_A           12 LGDGASGKTSLTTCFA   27 (178)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHH
Confidence            49 9999999999998

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=90.86  E-value=0.091  Score=39.75  Aligned_cols=15  Identities=33%  Similarity=0.350  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+++.+++
T Consensus        36 ~G~~g~GKTTl~~~l~   51 (221)
T 2wsm_A           36 MGAIGSGKTLLIERTI   51 (221)
T ss_dssp             EECTTSCHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            49 9999999999998

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=90.86  E-value=0.1  Score=37.07  Aligned_cols=15  Identities=20%  Similarity=0.443  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++..++.
T Consensus         6 ~G~~~~GKssl~~~l~   21 (164)
T 1r8s_A            6 VGLDAAGKTTILYKLK   21 (164)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999998

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=90.84  E-value=0.086  Score=41.36  Aligned_cols=19  Identities=21%  Similarity=0.253  Sum_probs=16.0

Q ss_pred             c-CCCcHHHHHHHHHccccc
Q 036857           44 G-PYTGKSSLIAAMADLDLK   62 (170)
Q Consensus        44 G-PGtGKT~la~aiA~~~l~   62 (170)
                      | +|||||++++.++++++.
T Consensus        16 GgigsGKStv~~~l~~~g~~   35 (210)
T 4i1u_A           16 GGIGSGKTTVADLFAARGAS   35 (210)
T ss_dssp             CCTTSCHHHHHHHHHHTTCE
T ss_pred             CCCCCCHHHHHHHHHHCCCc
Confidence            8 999999999999954443

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=90.83  E-value=0.1  Score=38.30  Aligned_cols=15  Identities=33%  Similarity=0.355  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||+++.+++
T Consensus        27 vG~~~~GKSsli~~l~   42 (190)
T 3con_A           27 VGAGGVGKSALTIQLI   42 (190)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHH
Confidence            59 9999999999998

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=90.79  E-value=0.1  Score=38.77  Aligned_cols=15  Identities=33%  Similarity=0.368  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| -|+|||++.|+++
T Consensus        39 ~G~nGaGKTTLlr~l~   54 (158)
T 1htw_A           39 NGDLGAGKTTLTRGML   54 (158)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=90.76  E-value=0.03  Score=42.48  Aligned_cols=15  Identities=27%  Similarity=0.459  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++++.
T Consensus        32 vG~~~vGKSsLi~~l~   47 (201)
T 2ew1_A           32 IGNAGVGKTCLVRRFT   47 (201)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHH
Confidence            59 9999999999998

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=90.69  E-value=0.1  Score=39.48  Aligned_cols=14  Identities=29%  Similarity=0.555  Sum_probs=13.4

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | +|+|||+++..++
T Consensus        11 G~sGsGKTTl~~~L~   25 (169)
T 1xjc_A           11 GYKHSGKTTLMEKWV   25 (169)
T ss_dssp             CCTTSSHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHH
Confidence            9 9999999999998

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=90.69  E-value=0.27  Score=42.41  Aligned_cols=15  Identities=40%  Similarity=0.395  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++|..+|
T Consensus         8 ~GptgsGKttla~~La   23 (409)
T 3eph_A            8 AGTTGVGKSQLSIQLA   23 (409)
T ss_dssp             EECSSSSHHHHHHHHH
T ss_pred             ECcchhhHHHHHHHHH
Confidence            49 9999999999999

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=90.68  E-value=0.09  Score=37.81  Aligned_cols=15  Identities=47%  Similarity=0.543  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++++.
T Consensus        15 ~G~~~~GKssl~~~l~   30 (181)
T 3tw8_B           15 IGDSGVGKSSLLLRFA   30 (181)
T ss_dssp             ECCTTSCHHHHHHHHC
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            59 9999999999998

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=90.68  E-value=0.1  Score=37.17  Aligned_cols=15  Identities=33%  Similarity=0.474  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++..++.
T Consensus         9 ~G~~~~GKssli~~l~   24 (170)
T 1g16_A            9 IGDSGVGKSCLLVRFV   24 (170)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHH
Confidence            49 9999999999998

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=90.61  E-value=0.098  Score=39.70  Aligned_cols=15  Identities=33%  Similarity=0.430  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+++..++
T Consensus        44 vG~~gvGKTtl~~~l~   59 (226)
T 2hf9_A           44 MGAIGSGKTLLIEKLI   59 (226)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            49 9999999999998

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=90.56  E-value=0.27  Score=38.73  Aligned_cols=15  Identities=27%  Similarity=0.423  Sum_probs=13.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| .|+|||+.+..+|
T Consensus        34 tG~MgsGKTT~lL~~a   49 (214)
T 2j9r_A           34 CGSMFSGKSEELIRRV   49 (214)
T ss_dssp             ECSTTSCHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHH
Confidence            69 7999999888877

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=90.52  E-value=0.11  Score=37.33  Aligned_cols=15  Identities=33%  Similarity=0.463  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++++++.
T Consensus        14 ~G~~~~GKSsli~~l~   29 (182)
T 1ky3_A           14 LGDSGVGKTSLMHRYV   29 (182)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999998

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=90.48  E-value=0.11  Score=37.67  Aligned_cols=15  Identities=27%  Similarity=0.410  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+++.++.
T Consensus        17 ~G~~~~GKSsli~~l~   32 (195)
T 3bc1_A           17 LGDSGVGKTSVLYQYT   32 (195)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999998

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=90.46  E-value=0.11  Score=37.93  Aligned_cols=15  Identities=40%  Similarity=0.536  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++..++.
T Consensus         7 ~G~~~~GKSsli~~l~   22 (190)
T 2cxx_A            7 AGRSNVGKSTLIYRLT   22 (190)
T ss_dssp             EEBTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999998

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=90.40  E-value=0.11  Score=43.01  Aligned_cols=15  Identities=47%  Similarity=0.663  Sum_probs=14.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++++.|+
T Consensus       132 vGpsGsGKSTLl~lL~  147 (305)
T 2v9p_A          132 IGPPNTGKSMLCNSLI  147 (305)
T ss_dssp             ECSSSSSHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHh
Confidence            59 9999999999999

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=90.40  E-value=0.12  Score=37.26  Aligned_cols=15  Identities=33%  Similarity=0.541  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++.+++.
T Consensus        14 ~G~~~~GKssl~~~l~   29 (178)
T 2lkc_A           14 MGHVDHGKTTLLDAIR   29 (178)
T ss_dssp             ESCTTTTHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999998

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=90.40  E-value=0.095  Score=40.92  Aligned_cols=15  Identities=33%  Similarity=0.519  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+||||+.++++
T Consensus        36 iG~nGsGKSTLl~~l~   51 (224)
T 2pcj_A           36 IGASGSGKSTLLYILG   51 (224)
T ss_dssp             EECTTSCHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            39 9999999999999

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=90.39  E-value=0.11  Score=37.30  Aligned_cols=15  Identities=40%  Similarity=0.583  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||+++.++.
T Consensus        20 ~G~~~~GKssli~~l~   35 (179)
T 2y8e_A           20 LGEQSVGKTSLITRFM   35 (179)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999998

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=90.37  E-value=0.12  Score=38.04  Aligned_cols=15  Identities=33%  Similarity=0.578  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++..++.
T Consensus        54 vG~~g~GKSsll~~l~   69 (193)
T 2ged_A           54 AGPQNSGKTSLLTLLT   69 (193)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            59 9999999999998

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=90.36  E-value=0.31  Score=47.43  Aligned_cols=15  Identities=27%  Similarity=0.439  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+|||++++.++
T Consensus      1065 vG~sGsGKSTl~~~l~ 1080 (1284)
T 3g5u_A         1065 VGSSGCGKSTVVQLLE 1080 (1284)
T ss_dssp             ECSSSTTHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999999

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=90.36  E-value=0.11  Score=37.35  Aligned_cols=15  Identities=33%  Similarity=0.328  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++.+++.
T Consensus        15 ~G~~~~GKssli~~l~   30 (181)
T 2fn4_A           15 VGGGGVGKSALTIQFI   30 (181)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999998

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=90.33  E-value=0.12  Score=37.08  Aligned_cols=15  Identities=33%  Similarity=0.412  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++++.
T Consensus        21 ~G~~~~GKSsli~~l~   36 (179)
T 1z0f_A           21 IGDMGVGKSCLLHQFT   36 (179)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999998

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=90.24  E-value=0.12  Score=40.10  Aligned_cols=15  Identities=27%  Similarity=0.377  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||+++++++
T Consensus        25 ~GPSGaGKsTL~~~L~   40 (197)
T 3ney_A           25 IGASGVGRSHIKNALL   40 (197)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHH
Confidence            49 9999999999999

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=90.22  E-value=0.12  Score=41.03  Aligned_cols=15  Identities=33%  Similarity=0.492  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+||||+.++++
T Consensus        30 iG~nGsGKSTLl~~l~   45 (240)
T 2onk_A           30 LGPTGAGKSVFLELIA   45 (240)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            39 9999999999999

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=90.19  E-value=0.11  Score=39.24  Aligned_cols=15  Identities=27%  Similarity=0.543  Sum_probs=12.7

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||+|||+++..++
T Consensus         9 ~G~~gsGKTT~ll~~~   24 (184)
T 2orw_A            9 TGPMYSGKTTELLSFV   24 (184)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            69 9999999986665

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=90.18  E-value=0.13  Score=36.75  Aligned_cols=15  Identities=20%  Similarity=0.446  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++..++.
T Consensus        13 ~G~~~~GKssl~~~l~   28 (171)
T 1upt_A           13 LGLDGAGKTTILYRLQ   28 (171)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            59 9999999999997

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=90.09  E-value=0.12  Score=37.71  Aligned_cols=15  Identities=20%  Similarity=0.434  Sum_probs=13.8

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|++.+.
T Consensus        20 vG~~~~GKssL~~~l~   35 (198)
T 3t1o_A           20 YGPGLSGKTTNLKWIY   35 (198)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999887

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=90.07  E-value=0.13  Score=38.93  Aligned_cols=15  Identities=27%  Similarity=0.370  Sum_probs=13.9

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| +|+|||+++++++
T Consensus        12 ~G~sGsGKTTl~~~l~   27 (174)
T 1np6_A           12 AAWSGTGKTTLLKKLI   27 (174)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHH
Confidence            49 9999999999998

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=90.04  E-value=0.11  Score=40.83  Aligned_cols=14  Identities=29%  Similarity=0.608  Sum_probs=13.8

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | .|+||||+.++++
T Consensus        38 G~nGsGKSTLl~~l~   52 (235)
T 3tif_A           38 GPSGSGKSTMLNIIG   52 (235)
T ss_dssp             CSTTSSHHHHHHHHT
T ss_pred             CCCCCcHHHHHHHHh
Confidence            9 9999999999999

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=90.03  E-value=0.13  Score=37.31  Aligned_cols=15  Identities=33%  Similarity=0.375  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+++.++.
T Consensus        10 ~G~~~~GKSsli~~l~   25 (189)
T 4dsu_A           10 VGADGVGKSALTIQLI   25 (189)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999998

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=90.03  E-value=0.13  Score=38.76  Aligned_cols=15  Identities=33%  Similarity=0.578  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+++.+++
T Consensus        18 ~G~~g~GKTsl~~~l~   33 (218)
T 1nrj_B           18 AGPQNSGKTSLLTLLT   33 (218)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            59 9999999999999

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=90.01  E-value=0.13  Score=37.46  Aligned_cols=15  Identities=33%  Similarity=0.581  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+++.++.
T Consensus        13 ~G~~~~GKSsli~~l~   28 (208)
T 3clv_A           13 LGESSVGKSSIVLRLT   28 (208)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999998

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=90.01  E-value=0.13  Score=40.22  Aligned_cols=15  Identities=47%  Similarity=0.450  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+||||+.++++
T Consensus        22 ~GpsGsGKSTLlk~L~   37 (219)
T 1s96_A           22 SAPSGAGKSSLIQALL   37 (219)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            39 9999999999999

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=89.99  E-value=0.12  Score=37.87  Aligned_cols=15  Identities=33%  Similarity=0.550  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++++.
T Consensus        13 ~G~~~vGKSsli~~l~   28 (184)
T 1m7b_A           13 VGDSQCGKTALLHVFA   28 (184)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            59 9999999999998

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=89.96  E-value=0.13  Score=40.06  Aligned_cols=14  Identities=36%  Similarity=0.323  Sum_probs=13.7

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||+|||+.++.++
T Consensus        13 G~~gsGKsT~~~~l~   27 (213)
T 4edh_A           13 GPEGAGKSTNRDYLA   27 (213)
T ss_dssp             CSTTSSHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHH
Confidence            9 9999999999998

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=89.95  E-value=0.088  Score=46.95  Aligned_cols=15  Identities=47%  Similarity=0.530  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+||||++++||
T Consensus       375 iG~sGSGKSTLar~La  390 (552)
T 3cr8_A          375 TGLSGAGKSTLARALA  390 (552)
T ss_dssp             EESSCHHHHHHHHHHH
T ss_pred             ECCCCChHHHHHHHHH
Confidence            49 9999999999999

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=89.92  E-value=0.12  Score=37.87  Aligned_cols=15  Identities=40%  Similarity=0.556  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++..++.
T Consensus        29 ~G~~~~GKSsli~~l~   44 (195)
T 1svi_A           29 AGRSNVGKSSFINSLI   44 (195)
T ss_dssp             EEBTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            59 9999999999998

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=89.86  E-value=0.12  Score=40.75  Aligned_cols=15  Identities=47%  Similarity=0.530  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+||||+.++|+
T Consensus        37 ~G~nGsGKSTLl~~l~   52 (237)
T 2cbz_A           37 VGQVGCGKSSLLSALL   52 (237)
T ss_dssp             ECSTTSSHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999999

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=89.84  E-value=0.14  Score=37.01  Aligned_cols=15  Identities=33%  Similarity=0.322  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++++++.
T Consensus        24 ~G~~~~GKSsli~~l~   39 (187)
T 2a9k_A           24 VGSGGVGKSALTLQFM   39 (187)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            59 9999999999998

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=89.84  E-value=0.12  Score=40.99  Aligned_cols=15  Identities=33%  Similarity=0.718  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++..++.
T Consensus         9 vG~~g~GKTTL~n~l~   24 (271)
T 3k53_A            9 VGNPNVGKTTIFNALT   24 (271)
T ss_dssp             EECSSSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999999

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=89.83  E-value=0.14  Score=37.06  Aligned_cols=15  Identities=27%  Similarity=0.426  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++.+++.
T Consensus        11 ~G~~~~GKssl~~~l~   26 (186)
T 1mh1_A           11 VGDGAVGKTCLLISYT   26 (186)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999998

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=89.81  E-value=0.14  Score=37.71  Aligned_cols=15  Identities=27%  Similarity=0.510  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|++++.
T Consensus        31 ~G~~~~GKSsLi~~l~   46 (193)
T 2oil_A           31 IGESGVGKTNLLSRFT   46 (193)
T ss_dssp             ESSTTSSHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHh
Confidence            59 9999999999998

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=89.75  E-value=0.14  Score=37.15  Aligned_cols=15  Identities=33%  Similarity=0.295  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++++.
T Consensus        24 ~G~~~~GKSsl~~~l~   39 (183)
T 3kkq_A           24 VGDGGVGKSALTIQFF   39 (183)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999998

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=89.74  E-value=0.12  Score=41.35  Aligned_cols=15  Identities=27%  Similarity=0.514  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+||||+.++|+
T Consensus        38 iG~nGsGKSTLlk~l~   53 (262)
T 1b0u_A           38 IGSSGSGKSTFLRCIN   53 (262)
T ss_dssp             ECCTTSSHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            39 9999999999999

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=89.74  E-value=0.11  Score=37.58  Aligned_cols=15  Identities=47%  Similarity=0.603  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++++.
T Consensus        13 vG~~~vGKTsli~~l~   28 (178)
T 2iwr_A           13 LGDARSGKSSLIHRFL   28 (178)
T ss_dssp             ECCGGGCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999998

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=89.73  E-value=0.06  Score=43.83  Aligned_cols=14  Identities=21%  Similarity=0.354  Sum_probs=10.7

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | +|+|||++|+.++
T Consensus        12 G~sGSGKSTva~~L~   26 (290)
T 1a7j_A           12 GSSGAGTSTVKHTFD   26 (290)
T ss_dssp             SCC---CCTHHHHHH
T ss_pred             CCCCCCHHHHHHHHH
Confidence            9 9999999999999

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=89.71  E-value=0.098  Score=40.56  Aligned_cols=15  Identities=40%  Similarity=0.423  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+|||||.++++
T Consensus        28 iG~nGsGKSTLl~~l~   43 (208)
T 3b85_A           28 LGPAGSGKTYLAMAKA   43 (208)
T ss_dssp             ECCTTSSTTHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999998

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=89.71  E-value=0.13  Score=46.80  Aligned_cols=37  Identities=16%  Similarity=0.151  Sum_probs=22.7

Q ss_pred             CCCCcccccCChhhHHHhhcC--------c--cc-CCCcHHHHHHHHH
Q 036857           21 HPATSNTIATDFDMNKALVDD--------Y--WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        21 ~p~~~~~v~~~~~~k~~l~~~--------~--~G-PGtGKT~la~aiA   57 (170)
                      .+..|..-......++++...        +  -| ||+|||++|++++
T Consensus        26 ~~~~~~~~~v~~~~r~~~~~~~~~~~g~lIvLtGlsGSGKSTlAr~La   73 (630)
T 1x6v_B           26 TNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALE   73 (630)
T ss_dssp             --------CCCHHHHHHHSSSSSSCCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             ccccccccCCCHHHHHHHhCCCccCCCCEEEEEeCCCCCHHHHHHHHH
Confidence            445566666667777766553        2  49 9999999999999

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=89.67  E-value=0.13  Score=37.44  Aligned_cols=15  Identities=47%  Similarity=0.592  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++..++.
T Consensus        29 ~G~~~~GKSsli~~l~   44 (195)
T 3pqc_A           29 VGRSNVGKSSLLNALF   44 (195)
T ss_dssp             EEBTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999998

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=89.63  E-value=0.06  Score=40.28  Aligned_cols=15  Identities=33%  Similarity=0.492  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++.++++
T Consensus        32 vG~~g~GKSTLl~~l~   47 (210)
T 1pui_A           32 AGRSNAGKSSALNTLT   47 (210)
T ss_dssp             EECTTSSHHHHHTTTC
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999998

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=89.61  E-value=0.15  Score=36.78  Aligned_cols=15  Identities=27%  Similarity=0.430  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++..++.
T Consensus        16 ~G~~~~GKssli~~l~   31 (180)
T 2g6b_A           16 VGDSGVGKTCLLVRFK   31 (180)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHH
Confidence            49 9999999999998

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=89.58  E-value=0.17  Score=38.65  Aligned_cols=35  Identities=9%  Similarity=0.134  Sum_probs=21.1

Q ss_pred             CCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          106 GDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       106 ~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      ..+.++|=|.........+.++  ..|..|-.-.|+.
T Consensus       131 ~yD~viiD~pp~~~~~~~~~l~--~aD~viiv~~~~~  165 (254)
T 3kjh_A          131 KKEAVVMDMGAGIEHLTRGTAK--AVDMMIAVIEPNL  165 (254)
T ss_dssp             CCSEEEEEECTTCTTCCHHHHT--TCSEEEEEECSSH
T ss_pred             CCCEEEEeCCCcccHHHHHHHH--HCCEEEEecCCCH
Confidence            3567777666555554444453  5666776666666

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=89.55  E-value=0.14  Score=38.08  Aligned_cols=15  Identities=27%  Similarity=0.554  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++.+++.
T Consensus        29 vG~~~vGKSsli~~l~   44 (190)
T 1m2o_B           29 LGLDNAGKTTLLHMLK   44 (190)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            59 9999999999998

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=89.55  E-value=0.14  Score=42.09  Aligned_cols=15  Identities=33%  Similarity=0.443  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+||||+++.+|
T Consensus       108 vG~nGsGKTTll~~La  123 (304)
T 1rj9_A          108 VGVNGVGKTTTIAKLG  123 (304)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHH
Confidence            49 9999999999999

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=89.51  E-value=0.15  Score=36.79  Aligned_cols=15  Identities=27%  Similarity=0.426  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++.+++.
T Consensus        14 ~G~~~~GKssl~~~~~   29 (182)
T 3bwd_D           14 VGDGAVGKTCLLISYT   29 (182)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            59 9999999999998

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=89.46  E-value=0.08  Score=39.92  Aligned_cols=15  Identities=40%  Similarity=0.612  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++++.++
T Consensus         8 vG~SGsGKSTL~~~L~   23 (171)
T 2f1r_A            8 VGTSDSGKTTLITRMM   23 (171)
T ss_dssp             EESCHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999999

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=89.45  E-value=0.14  Score=45.88  Aligned_cols=14  Identities=29%  Similarity=0.527  Sum_probs=13.8

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||+|||++|++++
T Consensus       403 GlsGSGKSTiA~~La  417 (573)
T 1m8p_A          403 GYMNSGKDAIARALQ  417 (573)
T ss_dssp             CSTTSSHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHH
Confidence            9 9999999999999

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=89.44  E-value=0.14  Score=37.15  Aligned_cols=15  Identities=40%  Similarity=0.496  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++++.
T Consensus        16 ~G~~~~GKSsli~~l~   31 (186)
T 2bme_A           16 IGNAGTGKSCLLHQFI   31 (186)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999998

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=89.40  E-value=0.14  Score=39.27  Aligned_cols=15  Identities=13%  Similarity=-0.057  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| +|||||++++.+|
T Consensus        12 ~g~~GsGk~ti~~~la   27 (201)
T 3fdi_A           12 GREFGSGGHLVAKKLA   27 (201)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHH
Confidence            38 9999999999999

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=89.37  E-value=0.15  Score=42.07  Aligned_cols=15  Identities=33%  Similarity=0.368  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++++.+|
T Consensus       110 vG~~GsGKTTl~~~LA  125 (306)
T 1vma_A          110 VGVNGTGKTTSCGKLA  125 (306)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             EcCCCChHHHHHHHHH
Confidence            49 9999999999999

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=89.33  E-value=0.15  Score=36.99  Aligned_cols=15  Identities=40%  Similarity=0.477  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+++.++.
T Consensus        12 ~G~~~~GKSsli~~l~   27 (181)
T 3t5g_A           12 LGYRSVGKSSLTIQFV   27 (181)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHH
Confidence            59 9999999999998

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=89.28  E-value=0.15  Score=42.35  Aligned_cols=15  Identities=47%  Similarity=0.629  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++.++++
T Consensus        61 ~G~~GaGKSTLl~~l~   76 (337)
T 2qm8_A           61 TGVPGVGKSTTIDALG   76 (337)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999998

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=89.28  E-value=0.15  Score=37.25  Aligned_cols=15  Identities=20%  Similarity=0.519  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++.+++.
T Consensus        24 ~G~~~~GKssl~~~l~   39 (186)
T 1ksh_A           24 LGLDNAGKTTILKKFN   39 (186)
T ss_dssp             ECSTTSSHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            59 9999999999998

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=89.24  E-value=0.15  Score=40.38  Aligned_cols=16  Identities=38%  Similarity=0.385  Sum_probs=14.6

Q ss_pred             cc-CCCcHHHHHHHHHc
Q 036857           43 WG-PYTGKSSLIAAMAD   58 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA~   58 (170)
                      .| .|+||||+.+.|++
T Consensus        35 ~G~nGsGKSTLlk~l~G   51 (250)
T 2d2e_A           35 MGPNGAGKSTLGKILAG   51 (250)
T ss_dssp             ECSTTSSHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHhC
Confidence            39 99999999999994

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=89.21  E-value=0.16  Score=37.57  Aligned_cols=15  Identities=33%  Similarity=0.592  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++++.
T Consensus        34 ~G~~~vGKSsli~~l~   49 (196)
T 2atv_A           34 FGRAGVGKSALVVRFL   49 (196)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999998

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=89.21  E-value=0.15  Score=43.21  Aligned_cols=15  Identities=27%  Similarity=0.439  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .||||||+.|+||
T Consensus        35 lGpnGsGKSTLLr~ia   50 (372)
T 1g29_1           35 LGPSGCGKTTTLRMIA   50 (372)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCcHHHHHHHHHH
Confidence            49 9999999999999

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=89.21  E-value=0.15  Score=42.38  Aligned_cols=15  Identities=47%  Similarity=0.638  Sum_probs=13.9

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| ||+|||+++.+++
T Consensus        85 ~G~~G~GKSTl~~~L~  100 (355)
T 3p32_A           85 TGVPGVGKSTAIEALG  100 (355)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999998

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=89.19  E-value=0.15  Score=43.25  Aligned_cols=15  Identities=27%  Similarity=0.439  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .||||||+.|+||
T Consensus        43 lGpnGsGKSTLLr~ia   58 (372)
T 1v43_A           43 LGPSGCGKTTTLRMIA   58 (372)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCChHHHHHHHHH
Confidence            49 9999999999999

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=89.15  E-value=0.15  Score=40.30  Aligned_cols=15  Identities=27%  Similarity=0.408  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+||||+.++|+
T Consensus        34 ~G~nGsGKSTLl~~l~   49 (243)
T 1mv5_A           34 AGPSGGGKSTIFSLLE   49 (243)
T ss_dssp             ECCTTSSHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            39 9999999999999

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=89.14  E-value=0.15  Score=40.55  Aligned_cols=15  Identities=33%  Similarity=0.434  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+||||+.+.|+
T Consensus        41 ~G~nGsGKSTLl~~l~   56 (247)
T 2ff7_A           41 VGRSGSGKSTLTKLIQ   56 (247)
T ss_dssp             ECSTTSSHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            39 9999999999999

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=89.13  E-value=0.15  Score=41.08  Aligned_cols=15  Identities=33%  Similarity=0.499  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+||||+.++++
T Consensus        43 iG~nGsGKSTLl~~l~   58 (266)
T 4g1u_C           43 IGPNGAGKSTLLRLLT   58 (266)
T ss_dssp             ECCTTSCHHHHHHHHT
T ss_pred             ECCCCCcHHHHHHHHh
Confidence            39 9999999999999

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=89.12  E-value=0.17  Score=37.43  Aligned_cols=15  Identities=33%  Similarity=0.406  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++++.
T Consensus        27 vG~~~vGKTsLi~~l~   42 (187)
T 3c5c_A           27 LGRRGAGKSALTVKFL   42 (187)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHH
Confidence            59 9999999999998

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=89.12  E-value=0.15  Score=40.69  Aligned_cols=15  Identities=40%  Similarity=0.574  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+||||+.++++
T Consensus        39 iG~nGsGKSTLlk~l~   54 (257)
T 1g6h_A           39 IGPNGSGKSTLINVIT   54 (257)
T ss_dssp             ECSTTSSHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            39 9999999999999

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=89.10  E-value=0.17  Score=37.19  Aligned_cols=15  Identities=33%  Similarity=0.465  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+++.++.
T Consensus        28 vG~~~~GKSsli~~l~   43 (189)
T 2gf9_A           28 IGNSSVGKTSFLFRYA   43 (189)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999998

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=89.06  E-value=0.17  Score=37.43  Aligned_cols=15  Identities=33%  Similarity=0.417  Sum_probs=13.9

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|++.+.
T Consensus        26 vG~~~vGKSsL~~~~~   41 (184)
T 3ihw_A           26 VGNLSSGKSALVHRYL   41 (184)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999887

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=88.99  E-value=0.15  Score=41.01  Aligned_cols=15  Identities=33%  Similarity=0.457  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+||||+.++|+
T Consensus         8 vG~nGaGKSTLln~L~   23 (270)
T 3sop_A            8 VGQSGLGKSTLVNTLF   23 (270)
T ss_dssp             EESSSSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            39 9999999999999

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=88.98  E-value=0.16  Score=42.71  Aligned_cols=15  Identities=33%  Similarity=0.452  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++|+.+|
T Consensus        13 ~GptgSGKTtla~~La   28 (340)
T 3d3q_A           13 VGPTASGKTELSIEVA   28 (340)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCcCcHHHHHHHHH
Confidence            49 9999999999999

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=88.97  E-value=0.17  Score=37.27  Aligned_cols=15  Identities=33%  Similarity=0.496  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++.+++.
T Consensus        29 vG~~~~GKSsl~~~l~   44 (194)
T 3reg_A           29 VGDGAVGKTCLLLAFS   44 (194)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHh
Confidence            59 9999999999998

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=88.95  E-value=0.4  Score=44.34  Aligned_cols=15  Identities=33%  Similarity=0.488  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+|||++.|.+|
T Consensus       582 ~GpNGsGKSTlLr~ia  597 (765)
T 1ewq_A          582 TGPNMAGKSTFLRQTA  597 (765)
T ss_dssp             ESCSSSSHHHHHHHHH
T ss_pred             ECCCCCChHHHHHHHH
Confidence            49 9999999999998

>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*

Probab=88.94  E-value=1.6  Score=35.19  Aligned_cols=14  Identities=21%  Similarity=0.444  Sum_probs=11.7

Q ss_pred             ceeEeeechhhhcc
Q 036857           69 RSILVIEDAVTSFE   82 (170)
Q Consensus        69 p~il~iDEiD~~~~   82 (170)
                      -.+|++||+|.+..
T Consensus       146 ~~~iIiDEah~~~~  159 (395)
T 3pey_A          146 IKIFVLDEADNMLD  159 (395)
T ss_dssp             CCEEEEETHHHHHH
T ss_pred             CCEEEEEChhhhcC
Confidence            56899999998865

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=88.90  E-value=0.16  Score=37.79  Aligned_cols=15  Identities=33%  Similarity=0.488  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++++.
T Consensus        30 vG~~~~GKSsli~~l~   45 (201)
T 3oes_A           30 LGYRCVGKTSLAHQFV   45 (201)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            59 9999999999999

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=88.90  E-value=0.16  Score=38.86  Aligned_cols=15  Identities=33%  Similarity=0.370  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| +|+|||++|..+|
T Consensus         5 ~Gg~~SGKS~~A~~la   20 (180)
T 1c9k_A            5 TGGARSGKSRHAEALI   20 (180)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHH
Confidence            59 9999999999998

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=88.89  E-value=0.18  Score=37.40  Aligned_cols=15  Identities=33%  Similarity=0.483  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++.+++.
T Consensus        14 ~G~~~~GKSsli~~l~   29 (207)
T 1vg8_A           14 LGDSGVGKTSLMNQYV   29 (207)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHH
Confidence            59 9999999999998

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=88.87  E-value=0.26  Score=42.35  Aligned_cols=36  Identities=14%  Similarity=0.046  Sum_probs=27.3

Q ss_pred             CCCcccccCChhhHHHhhcCc---------cc-CCCcHHHHHHHHH
Q 036857           22 PATSNTIATDFDMNKALVDDY---------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        22 p~~~~~v~~~~~~k~~l~~~~---------~G-PGtGKT~la~aiA   57 (170)
                      ..+++++.+.++.+..+...+         .| .|+||||+.++++
T Consensus       143 ~~~l~~Lg~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~all  188 (418)
T 1p9r_A          143 RLDLHSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGL  188 (418)
T ss_dssp             CCCGGGSCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHH
T ss_pred             CCCHHHcCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHH
Confidence            456888888887655443322         49 9999999999998

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=88.87  E-value=0.14  Score=37.65  Aligned_cols=15  Identities=33%  Similarity=0.636  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++.+++.
T Consensus        22 vG~~~vGKSsL~~~l~   37 (181)
T 1fzq_A           22 LGLDNAGKTTLLKQLA   37 (181)
T ss_dssp             EESTTSSHHHHHHHHC
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999998

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=88.87  E-value=0.18  Score=37.27  Aligned_cols=15  Identities=33%  Similarity=0.322  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|+.++.
T Consensus        20 ~G~~~~GKSsli~~l~   35 (206)
T 2bov_A           20 VGSGGVGKSALTLQFM   35 (206)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999998

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=88.86  E-value=0.18  Score=37.66  Aligned_cols=15  Identities=40%  Similarity=0.450  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|...+.
T Consensus        12 vG~~~vGKSsL~~~~~   27 (192)
T 2cjw_A           12 IGEQGVGKSTLANIFA   27 (192)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999997

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=88.85  E-value=0.14  Score=38.34  Aligned_cols=15  Identities=27%  Similarity=0.554  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++.+++.
T Consensus        31 vG~~~vGKSsLi~~l~   46 (198)
T 1f6b_A           31 LGLDNAGKTTLLHMLK   46 (198)
T ss_dssp             EEETTSSHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            59 9999999999998

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=88.82  E-value=0.17  Score=39.83  Aligned_cols=14  Identities=29%  Similarity=0.382  Sum_probs=13.7

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | +|+|||++++.++
T Consensus        28 G~~g~GKst~~~~l~   42 (223)
T 3ld9_A           28 GIDGSGKTTQSHLLA   42 (223)
T ss_dssp             CSTTSSHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHH
Confidence            9 9999999999999

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=88.80  E-value=0.18  Score=37.00  Aligned_cols=15  Identities=27%  Similarity=0.399  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++..++.
T Consensus        26 ~G~~~~GKSsli~~l~   41 (189)
T 1z06_A           26 IGDSNVGKTCLTYRFC   41 (189)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999998

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=88.80  E-value=0.13  Score=43.23  Aligned_cols=15  Identities=27%  Similarity=0.452  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .||||||+.|.||
T Consensus        32 lGpnGsGKSTLLr~ia   47 (348)
T 3d31_A           32 LGPTGAGKTLFLELIA   47 (348)
T ss_dssp             ECCCTHHHHHHHHHHH
T ss_pred             ECCCCccHHHHHHHHH
Confidence            49 9999999999999

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=88.78  E-value=0.16  Score=42.60  Aligned_cols=15  Identities=40%  Similarity=0.556  Sum_probs=13.8

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| ||+|||+++..+|
T Consensus        52 aG~pG~GKTt~al~ia   67 (338)
T 4a1f_A           52 GARPSMGKTSLMMNMV   67 (338)
T ss_dssp             EECTTSCHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHH
Confidence            38 9999999999998

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=88.78  E-value=0.18  Score=37.37  Aligned_cols=15  Identities=33%  Similarity=0.465  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+++.++.
T Consensus        14 ~G~~~~GKSsli~~l~   29 (203)
T 1zbd_A           14 IGNSSVGKTSFLFRYA   29 (203)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999998

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=88.77  E-value=0.67  Score=43.09  Aligned_cols=15  Identities=33%  Similarity=0.399  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| -|+|||++.|.++
T Consensus       613 tGpNGsGKSTlLr~ia  628 (800)
T 1wb9_A          613 TGPNMGGKSTYMRQTA  628 (800)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCChHHHHHHHH
Confidence            49 9999999999999

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=88.74  E-value=0.16  Score=39.81  Aligned_cols=15  Identities=13%  Similarity=-0.124  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| +|||||++++.+|
T Consensus        20 ~g~~gsGk~~i~~~la   35 (223)
T 3hdt_A           20 EREYGSGGRIVGKKLA   35 (223)
T ss_dssp             EECTTSCHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHH
Confidence            48 9999999999999

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=88.68  E-value=0.19  Score=37.04  Aligned_cols=15  Identities=33%  Similarity=0.793  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++.+++.
T Consensus        28 ~G~~~~GKSsli~~l~   43 (188)
T 1zd9_A           28 VGLQYSGKTTFVNVIA   43 (188)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999998

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=88.67  E-value=0.16  Score=40.80  Aligned_cols=15  Identities=27%  Similarity=0.521  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+|||||.++|+
T Consensus        56 iG~NGsGKSTLlk~l~   71 (263)
T 2olj_A           56 IGPSGSGKSTFLRCLN   71 (263)
T ss_dssp             ECCTTSSHHHHHHHHT
T ss_pred             EcCCCCcHHHHHHHHH
Confidence            39 9999999999999

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=88.66  E-value=0.17  Score=37.24  Aligned_cols=15  Identities=33%  Similarity=0.465  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++++.
T Consensus        29 ~G~~~~GKSsli~~l~   44 (191)
T 3dz8_A           29 IGNSSVGKTSFLFRYA   44 (191)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHh
Confidence            59 9999999999998

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=88.60  E-value=0.17  Score=39.92  Aligned_cols=15  Identities=33%  Similarity=0.516  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+||||+.+.++
T Consensus        38 ~G~nGsGKSTLl~~l~   53 (240)
T 1ji0_A           38 IGANGAGKTTTLSAIA   53 (240)
T ss_dssp             ECSTTSSHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            39 9999999999999

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=88.55  E-value=0.17  Score=40.12  Aligned_cols=14  Identities=36%  Similarity=0.491  Sum_probs=13.7

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||+|||+.++.++
T Consensus        34 G~~GsGKsT~~~~l~   48 (236)
T 3lv8_A           34 GLEGAGKSTAIQVVV   48 (236)
T ss_dssp             ESTTSCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHH
Confidence            9 9999999999998

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=88.53  E-value=0.19  Score=36.63  Aligned_cols=15  Identities=40%  Similarity=0.503  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++++.
T Consensus        21 ~G~~~~GKssli~~l~   36 (195)
T 1x3s_A           21 IGESGVGKSSLLLRFT   36 (195)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999998

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=88.53  E-value=0.17  Score=39.58  Aligned_cols=15  Identities=33%  Similarity=0.454  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+||||+.++++
T Consensus        40 ~G~nGsGKSTLl~~l~   55 (229)
T 2pze_A           40 AGSTGAGKTSLLMMIM   55 (229)
T ss_dssp             ECCTTSSHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            39 9999999999999

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=88.53  E-value=0.18  Score=36.94  Aligned_cols=15  Identities=20%  Similarity=0.472  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++.+++.
T Consensus        22 ~G~~~~GKssl~~~l~   37 (187)
T 1zj6_A           22 VGLDNAGKTTILYQFS   37 (187)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            59 9999999999998

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=88.53  E-value=0.22  Score=41.85  Aligned_cols=15  Identities=47%  Similarity=0.496  Sum_probs=14.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||+++..+|
T Consensus        46 ~GPTgsGKTtLa~~LA   61 (339)
T 3a8t_A           46 MGATGTGKSRLSIDLA   61 (339)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999999

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=88.52  E-value=0.18  Score=40.41  Aligned_cols=16  Identities=44%  Similarity=0.547  Sum_probs=14.6

Q ss_pred             cc-CCCcHHHHHHHHHc
Q 036857           43 WG-PYTGKSSLIAAMAD   58 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA~   58 (170)
                      .| .|+||||+.+.|++
T Consensus        52 ~G~NGsGKSTLlk~l~G   68 (267)
T 2zu0_C           52 MGPNGSGKSTLSATLAG   68 (267)
T ss_dssp             ECCTTSSHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHhC
Confidence            39 99999999999993

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=88.50  E-value=0.18  Score=36.79  Aligned_cols=15  Identities=20%  Similarity=0.472  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++..++.
T Consensus        27 ~G~~~~GKSsli~~l~   42 (181)
T 2h17_A           27 VGLDNAGKTTILYQFS   42 (181)
T ss_dssp             EEETTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            59 9999999999998

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=88.42  E-value=0.18  Score=37.21  Aligned_cols=15  Identities=33%  Similarity=0.527  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++.+++.
T Consensus        29 vG~~~~GKSsli~~l~   44 (192)
T 2fg5_A           29 LGDTGVGKSSIVCRFV   44 (192)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHh
Confidence            59 9999999999998

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=88.42  E-value=0.15  Score=38.14  Aligned_cols=15  Identities=33%  Similarity=0.452  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|+++++
T Consensus        29 vG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           29 VGESGVGKSTLAGTFG   44 (195)
T ss_dssp             ECSTTSSHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999996

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=88.41  E-value=0.17  Score=43.71  Aligned_cols=15  Identities=27%  Similarity=0.343  Sum_probs=13.8

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|..+|
T Consensus       203 aG~pG~GKTtlal~ia  218 (444)
T 3bgw_A          203 AARPSMGKTAFALKQA  218 (444)
T ss_dssp             EECSSSSHHHHHHHHH
T ss_pred             EeCCCCChHHHHHHHH
Confidence            38 9999999999998

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=88.40  E-value=0.14  Score=40.40  Aligned_cols=15  Identities=20%  Similarity=0.229  Sum_probs=11.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| ||+|||+.++.++
T Consensus        31 eG~~GsGKsT~~~~l~   46 (227)
T 3v9p_A           31 EGIDGAGKTTHLQWFC   46 (227)
T ss_dssp             ECCC---CHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999999

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=88.38  E-value=0.18  Score=39.33  Aligned_cols=15  Identities=27%  Similarity=0.527  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+||||+.++++
T Consensus        41 iG~NGsGKSTLlk~l~   56 (214)
T 1sgw_A           41 HGPNGIGKTTLLKTIS   56 (214)
T ss_dssp             ECCTTSSHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999999

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=88.37  E-value=0.17  Score=40.68  Aligned_cols=15  Identities=33%  Similarity=0.421  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+|||||.+.|+
T Consensus        51 ~G~nGsGKSTLlk~l~   66 (271)
T 2ixe_A           51 VGPNGSGKSTVAALLQ   66 (271)
T ss_dssp             ECSTTSSHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            39 9999999999999

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=88.35  E-value=0.14  Score=37.03  Aligned_cols=15  Identities=20%  Similarity=0.446  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++..++.
T Consensus        24 ~G~~~~GKssli~~l~   39 (183)
T 1moz_A           24 LGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             EEETTSSHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            59 9999999999998

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=88.34  E-value=0.18  Score=40.35  Aligned_cols=15  Identities=27%  Similarity=0.359  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+||||+.++|+
T Consensus        52 ~G~nGsGKSTLl~~l~   67 (260)
T 2ghi_A           52 VGHTGSGKSTIAKLLY   67 (260)
T ss_dssp             ECSTTSSHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            39 9999999999999

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=88.32  E-value=0.19  Score=36.95  Aligned_cols=15  Identities=33%  Similarity=0.339  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| -|+|||++++||+
T Consensus        32 ~G~NGsGKStll~ai~   47 (182)
T 3kta_A           32 VGANGSGKSNIGDAIL   47 (182)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            69 9999999999998

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=88.32  E-value=0.2  Score=37.19  Aligned_cols=15  Identities=33%  Similarity=0.492  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+++.++.
T Consensus        34 ~G~~~~GKSsli~~l~   49 (199)
T 2p5s_A           34 AGDAAVGKSSFLMRLC   49 (199)
T ss_dssp             ESSTTSSHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHH
Confidence            59 9999999999998

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=88.31  E-value=0.18  Score=41.18  Aligned_cols=15  Identities=33%  Similarity=0.631  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||+++..+|
T Consensus       111 vG~~GsGKTTl~~~LA  126 (296)
T 2px0_A          111 FGSTGAGKTTTLAKLA  126 (296)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=88.30  E-value=0.19  Score=40.20  Aligned_cols=15  Identities=47%  Similarity=0.532  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+|||++.++++
T Consensus        31 ~Gp~GsGKSTll~~l~   46 (261)
T 2eyu_A           31 TGPTGSGKSTTIASMI   46 (261)
T ss_dssp             ECSTTCSHHHHHHHHH
T ss_pred             ECCCCccHHHHHHHHH
Confidence            49 9999999999999

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=88.28  E-value=0.2  Score=37.49  Aligned_cols=15  Identities=27%  Similarity=0.332  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++..++.
T Consensus        13 vG~~~~GKTsli~~l~   28 (214)
T 2fh5_B           13 VGLCDSGKTLLFVRLL   28 (214)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            59 9999999999998

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=88.26  E-value=0.18  Score=39.63  Aligned_cols=15  Identities=27%  Similarity=0.253  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|..++
T Consensus        40 ~GpsGsGKStLA~~La   55 (205)
T 2qmh_A           40 TGDSGVGKSETALELV   55 (205)
T ss_dssp             ECCCTTTTHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=88.25  E-value=1.2  Score=34.44  Aligned_cols=15  Identities=33%  Similarity=0.636  Sum_probs=13.5

Q ss_pred             cc-CCCcHH-HHHHHHH
Q 036857           43 WG-PYTGKS-SLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT-~la~aiA   57 (170)
                      || .|+||| .|.+++.
T Consensus        26 yG~MgsGKTt~Ll~~i~   42 (195)
T 1w4r_A           26 LGPMFSGKSTELMRRVR   42 (195)
T ss_dssp             EECTTSCHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHH
Confidence            79 999999 7888887

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=88.23  E-value=0.21  Score=36.80  Aligned_cols=15  Identities=33%  Similarity=0.459  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++++++.
T Consensus        27 ~G~~~~GKSsli~~l~   42 (191)
T 2a5j_A           27 IGDTGVGKSCLLLQFT   42 (191)
T ss_dssp             ESSTTSSHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHh
Confidence            49 9999999999998

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=88.20  E-value=0.19  Score=36.83  Aligned_cols=15  Identities=40%  Similarity=0.574  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++..++.
T Consensus        14 vG~~~~GKSsli~~l~   29 (199)
T 2gf0_A           14 FGAGGVGKSSLVLRFV   29 (199)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHH
Confidence            59 9999999999998

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=88.19  E-value=0.19  Score=39.35  Aligned_cols=14  Identities=29%  Similarity=0.387  Sum_probs=13.7

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | +|+|||+.++.++
T Consensus        12 G~~g~GKst~~~~l~   26 (216)
T 3tmk_A           12 GLDRTGKTTQCNILY   26 (216)
T ss_dssp             ECSSSSHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHH
Confidence            9 9999999999999

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=88.15  E-value=0.2  Score=41.68  Aligned_cols=15  Identities=40%  Similarity=0.519  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+||||+++.+|
T Consensus       135 vG~nGaGKTTll~~La  150 (328)
T 3e70_C          135 VGFNGSGKTTTIAKLA  150 (328)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999999

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=88.12  E-value=0.62  Score=44.46  Aligned_cols=15  Identities=33%  Similarity=0.443  Sum_probs=13.9

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| -|+|||++.|.++
T Consensus       795 tGpNgsGKSTlLr~iG  810 (1022)
T 2o8b_B          795 TGPNMGGKSTLMRQAG  810 (1022)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCChHHHHHHHH
Confidence            49 9999999999998

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=88.09  E-value=0.2  Score=41.03  Aligned_cols=15  Identities=27%  Similarity=0.375  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+||||+++.+|
T Consensus       106 vG~nGsGKTTll~~La  121 (302)
T 3b9q_A          106 VGVNGGGKTTSLGKLA  121 (302)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            39 9999999999999

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=88.04  E-value=0.14  Score=39.74  Aligned_cols=16  Identities=19%  Similarity=0.378  Sum_probs=14.6

Q ss_pred             c-CCCcHHHHHHHHHcc
Q 036857           44 G-PYTGKSSLIAAMADL   59 (170)
Q Consensus        44 G-PGtGKT~la~aiA~~   59 (170)
                      | .|+||||+++.+++.
T Consensus        27 G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           27 GNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CSTTSCHHHHHHTTGGG
T ss_pred             CCCCCCHHHHHHHHHhc
Confidence            9 999999999999844

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=88.03  E-value=0.18  Score=41.03  Aligned_cols=15  Identities=47%  Similarity=0.550  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++.++|+
T Consensus       175 ~G~sG~GKSTll~~l~  190 (301)
T 1u0l_A          175 AGLSGVGKSSLLNAIN  190 (301)
T ss_dssp             ECSTTSSHHHHHHHHS
T ss_pred             ECCCCCcHHHHHHHhc
Confidence            49 9999999999998

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=88.00  E-value=0.22  Score=37.06  Aligned_cols=15  Identities=33%  Similarity=0.474  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+++.++.
T Consensus        26 ~G~~~~GKSsli~~l~   41 (213)
T 3cph_A           26 IGDSGVGKSCLLVRFV   41 (213)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999998

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=88.00  E-value=0.2  Score=40.76  Aligned_cols=15  Identities=33%  Similarity=0.514  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| +|+||||+.++++
T Consensus       171 ~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          171 AGPSGVGKSSILSRLT  186 (302)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999997

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=87.91  E-value=0.19  Score=42.86  Aligned_cols=14  Identities=43%  Similarity=0.676  Sum_probs=13.8

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | .||||||+.|+||
T Consensus        54 GpsGsGKSTLLr~ia   68 (390)
T 3gd7_A           54 GRTGSGKSTLLSAFL   68 (390)
T ss_dssp             ESTTSSHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHh
Confidence            9 9999999999999

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=87.90  E-value=1.1  Score=39.47  Aligned_cols=15  Identities=33%  Similarity=0.581  Sum_probs=13.8

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||+|||+++..+|
T Consensus       159 fgg~G~GKT~L~~~i~  174 (482)
T 2ck3_D          159 FGGAGVGKTVLIMELI  174 (482)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ecCCCCChHHHHHHHH
Confidence            69 9999999998887

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=87.90  E-value=0.21  Score=36.61  Aligned_cols=15  Identities=27%  Similarity=0.563  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|..++.
T Consensus        23 ~G~~~~GKSsl~~~l~   38 (199)
T 4bas_A           23 CGLDNSGKTTIINQVK   38 (199)
T ss_dssp             ECCTTSCHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999998

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=87.90  E-value=0.21  Score=39.63  Aligned_cols=15  Identities=47%  Similarity=0.738  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++..++.
T Consensus        11 vG~~nvGKTsL~n~l~   26 (258)
T 3a1s_A           11 AGCPNVGKTSLFNALT   26 (258)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999998

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=87.88  E-value=0.19  Score=40.64  Aligned_cols=15  Identities=27%  Similarity=0.609  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+|||||.+.|+
T Consensus        53 iG~NGsGKSTLlk~l~   68 (279)
T 2ihy_A           53 YGLNGAGKTTLLNILN   68 (279)
T ss_dssp             ECCTTSSHHHHHHHHT
T ss_pred             ECCCCCcHHHHHHHHh
Confidence            39 9999999999999

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=87.88  E-value=0.2  Score=40.17  Aligned_cols=15  Identities=40%  Similarity=0.532  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+||||+.++|+
T Consensus        39 iG~nGsGKSTLl~~i~   54 (266)
T 2yz2_A           39 AGNTGSGKSTLLQIVA   54 (266)
T ss_dssp             ECSTTSSHHHHHHHHT
T ss_pred             ECCCCCcHHHHHHHHh
Confidence            39 9999999999999

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=87.83  E-value=0.23  Score=36.75  Aligned_cols=15  Identities=33%  Similarity=0.499  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++.+++.
T Consensus        26 ~G~~~~GKssl~~~l~   41 (201)
T 2q3h_A           26 VGDGAVGKTSLVVSYT   41 (201)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999998

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=87.82  E-value=0.21  Score=37.78  Aligned_cols=15  Identities=33%  Similarity=0.550  Sum_probs=14.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++++.
T Consensus        34 vG~~~vGKSsLi~~l~   49 (205)
T 1gwn_A           34 VGDSQCGKTALLHVFA   49 (205)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            69 9999999999998

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=87.76  E-value=0.23  Score=38.03  Aligned_cols=15  Identities=40%  Similarity=0.494  Sum_probs=13.8

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| +|+|||++++.+.
T Consensus         7 ~GPSG~GK~Tl~~~L~   22 (186)
T 1ex7_A            7 SGPSGTGKSTLLKKLF   22 (186)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999997

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=87.76  E-value=0.22  Score=38.41  Aligned_cols=15  Identities=27%  Similarity=0.226  Sum_probs=14.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++..++.
T Consensus        35 vG~~g~GKStlin~l~   50 (239)
T 3lxx_A           35 VGKTGAGKSATGNSIL   50 (239)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHc
Confidence            59 9999999999999

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=87.74  E-value=0.22  Score=40.06  Aligned_cols=15  Identities=40%  Similarity=0.725  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++..++.
T Consensus         9 vG~~nvGKSTL~n~L~   24 (272)
T 3b1v_A            9 IGNPNSGKTSLFNLIT   24 (272)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=87.73  E-value=0.2  Score=39.85  Aligned_cols=15  Identities=53%  Similarity=0.634  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+||||+.+.++
T Consensus        32 iG~NGsGKSTLlk~l~   47 (249)
T 2qi9_C           32 VGPNGAGKSTLLARMA   47 (249)
T ss_dssp             ECCTTSSHHHHHHHHT
T ss_pred             ECCCCCcHHHHHHHHh
Confidence            39 9999999999999

>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*

Probab=87.72  E-value=0.33  Score=42.87  Aligned_cols=27  Identities=11%  Similarity=0.158  Sum_probs=18.4

Q ss_pred             cCChhhHHHhhcCc-----cc-CCCcHHHHHHH
Q 036857           29 ATDFDMNKALVDDY-----WG-PYTGKSSLIAA   55 (170)
Q Consensus        29 ~~~~~~k~~l~~~~-----~G-PGtGKT~la~a   55 (170)
                      .+++++++.+...-     .| ||||||+++-.
T Consensus         9 ~Ln~~Q~~av~~~~~~~lV~a~aGsGKT~~l~~   41 (647)
T 3lfu_A            9 SLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVH   41 (647)
T ss_dssp             TCCHHHHHHHTCCSSCEEEEECTTSCHHHHHHH
T ss_pred             cCCHHHHHHHhCCCCCEEEEECCCCCHHHHHHH
Confidence            35677777665321     59 99999986543

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=87.71  E-value=0.21  Score=39.70  Aligned_cols=15  Identities=40%  Similarity=0.751  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++..++.
T Consensus         7 vG~~n~GKSTL~n~L~   22 (256)
T 3iby_A            7 IGNPNCGKTTLFNALT   22 (256)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=87.70  E-value=0.2  Score=40.22  Aligned_cols=15  Identities=33%  Similarity=0.612  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+||||+.+.++
T Consensus        36 ~G~NGsGKSTLlk~l~   51 (263)
T 2pjz_A           36 LGPNGSGKTTLLRAIS   51 (263)
T ss_dssp             ECCTTSSHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            39 9999999999999

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=87.70  E-value=0.2  Score=40.01  Aligned_cols=15  Identities=20%  Similarity=0.379  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+|||||.++|+
T Consensus        47 ~G~NGsGKSTLlk~l~   62 (256)
T 1vpl_A           47 IGPNGAGKTTTLRIIS   62 (256)
T ss_dssp             ECCTTSSHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            39 9999999999999

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=87.59  E-value=0.22  Score=36.78  Aligned_cols=15  Identities=33%  Similarity=0.479  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++++++.
T Consensus        32 vG~~~~GKSsLi~~l~   47 (192)
T 2il1_A           32 IGSRGVGKTSLMERFT   47 (192)
T ss_dssp             ECSTTSSHHHHHHHHC
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            59 9999999999998

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=87.59  E-value=0.32  Score=40.64  Aligned_cols=15  Identities=27%  Similarity=0.259  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++++.++
T Consensus        41 ~G~~G~GKs~~~~~~~   56 (392)
T 4ag6_A           41 LAKPGAGKSFTAKMLL   56 (392)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            59 9999999999998

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=87.53  E-value=0.13  Score=43.16  Aligned_cols=15  Identities=27%  Similarity=0.527  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .||||||+.|.||
T Consensus        37 lGpnGsGKSTLLr~ia   52 (353)
T 1oxx_K           37 LGPSGAGKTTFMRIIA   52 (353)
T ss_dssp             ECSCHHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHh
Confidence            49 9999999999999

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=87.50  E-value=0.13  Score=37.31  Aligned_cols=15  Identities=20%  Similarity=0.379  Sum_probs=4.5

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+++.++.
T Consensus        14 ~G~~~~GKssl~~~l~   29 (183)
T 2fu5_C           14 IGDSGVGKTCVLFRFS   29 (183)
T ss_dssp             ECCCCC----------
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999997

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=87.48  E-value=0.24  Score=38.19  Aligned_cols=14  Identities=29%  Similarity=0.508  Sum_probs=13.5

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | .|+||||.++.++
T Consensus         9 G~dGsGKsTq~~~L~   23 (205)
T 4hlc_A            9 GPEGSGKTTVINEVY   23 (205)
T ss_dssp             CCTTSCHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHH
Confidence            9 9999999999998

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=87.48  E-value=0.22  Score=38.74  Aligned_cols=14  Identities=21%  Similarity=0.321  Sum_probs=13.7

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | +|+|||+.++.++
T Consensus        10 G~~gsGKsT~~~~l~   24 (213)
T 4tmk_A           10 GLEGAGKTTARNVVV   24 (213)
T ss_dssp             ECTTSCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHH
Confidence            9 9999999999999

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=87.47  E-value=0.23  Score=36.51  Aligned_cols=15  Identities=33%  Similarity=0.468  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++++++.
T Consensus        24 ~G~~~~GKssli~~l~   39 (194)
T 2atx_A           24 VGDGAVGKTCLLMSYA   39 (194)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            59 9999999999998

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=87.44  E-value=0.22  Score=39.70  Aligned_cols=15  Identities=33%  Similarity=0.465  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+||||+.+.++
T Consensus        37 ~G~nGsGKSTLl~~l~   52 (253)
T 2nq2_C           37 LGQNGCGKSTLLDLLL   52 (253)
T ss_dssp             ECCSSSSHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            39 9999999999999

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=87.41  E-value=0.23  Score=37.56  Aligned_cols=15  Identities=40%  Similarity=0.481  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+++.++.
T Consensus        40 vG~~~vGKSsli~~l~   55 (214)
T 2j1l_A           40 VGDGGCGKTSLLMVFA   55 (214)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHH
Confidence            59 9999999999998

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=87.40  E-value=0.21  Score=43.71  Aligned_cols=15  Identities=33%  Similarity=0.450  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.++
T Consensus       287 ~G~~GsGKSTLl~~l~  302 (525)
T 1tf7_A          287 TGATGTGKTLLVSRFV  302 (525)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHH
Confidence            59 9999999999999

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=87.39  E-value=0.23  Score=37.12  Aligned_cols=15  Identities=20%  Similarity=0.386  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++++.
T Consensus        15 ~G~~~~GKTsli~~l~   30 (212)
T 2j0v_A           15 VGDGAVGKTCMLICYT   30 (212)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            59 9999999999998

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=87.38  E-value=0.23  Score=41.32  Aligned_cols=15  Identities=40%  Similarity=0.598  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+||||+..+++
T Consensus        80 vG~pgaGKSTLln~L~   95 (349)
T 2www_A           80 SGPPGAGKSTFIEYFG   95 (349)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            49 9999999999998

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=87.36  E-value=0.23  Score=37.03  Aligned_cols=15  Identities=40%  Similarity=0.496  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++++++.
T Consensus        31 ~G~~~~GKSsLi~~l~   46 (200)
T 2o52_A           31 IGSAGTGKSCLLHQFI   46 (200)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHH
Confidence            59 9999999999998

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=87.33  E-value=0.23  Score=36.98  Aligned_cols=15  Identities=27%  Similarity=0.443  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+++.++.
T Consensus        31 vG~~~~GKSsli~~l~   46 (201)
T 2gco_A           31 VGDGACGKTCLLIVFS   46 (201)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999998

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=87.31  E-value=0.23  Score=37.15  Aligned_cols=15  Identities=27%  Similarity=0.443  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+++.++.
T Consensus        31 vG~~~~GKSsli~~l~   46 (207)
T 2fv8_A           31 VGDGACGKTCLLIVFS   46 (207)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHh
Confidence            59 9999999999998

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=87.29  E-value=0.23  Score=43.57  Aligned_cols=15  Identities=33%  Similarity=0.592  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      || ||+|||++++.++
T Consensus       157 ~G~sGvGKTtL~~~l~  172 (473)
T 1sky_E          157 FGGAGVGKTVLIQELI  172 (473)
T ss_dssp             ECCSSSCHHHHHHHHH
T ss_pred             ECCCCCCccHHHHHHH
Confidence            79 9999999999887

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=87.28  E-value=0.16  Score=37.26  Aligned_cols=15  Identities=27%  Similarity=0.592  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++.+++.
T Consensus        27 ~G~~~~GKSsli~~l~   42 (190)
T 2h57_A           27 LGLDNSGKTTIINKLK   42 (190)
T ss_dssp             EECTTSSHHHHHHHTS
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            59 9999999999998

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=87.27  E-value=0.23  Score=44.10  Aligned_cols=15  Identities=40%  Similarity=0.683  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| ||+|||++|+.++
T Consensus       378 ~G~~GsGKSTia~~La  393 (546)
T 2gks_A          378 TGLPCAGKSTIAEILA  393 (546)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHH
Confidence            39 9999999999998

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=87.25  E-value=0.25  Score=37.01  Aligned_cols=15  Identities=20%  Similarity=0.390  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|.+++.
T Consensus        31 vG~~~~GKSsLi~~l~   46 (217)
T 2f7s_A           31 LGDSGVGKTTFLYRYT   46 (217)
T ss_dssp             ESCTTSSHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHh
Confidence            59 9999999999998

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=87.20  E-value=0.25  Score=38.87  Aligned_cols=15  Identities=20%  Similarity=0.324  Sum_probs=13.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||+|||+++..++
T Consensus        18 tG~mGsGKTT~ll~~~   33 (223)
T 2b8t_A           18 TGPMFAGKTAELIRRL   33 (223)
T ss_dssp             ECSTTSCHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHH
Confidence            59 9999999988877

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=87.12  E-value=0.23  Score=36.86  Aligned_cols=15  Identities=20%  Similarity=0.443  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+++.++.
T Consensus        35 ~G~~~vGKSsLi~~l~   50 (192)
T 2b6h_A           35 VGLDAAGKTTILYKLK   50 (192)
T ss_dssp             EESTTSSHHHHHHHHC
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999997

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=87.10  E-value=0.25  Score=41.79  Aligned_cols=15  Identities=47%  Similarity=0.536  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||||+++|+
T Consensus       221 vG~sG~GKSTLln~L~  236 (358)
T 2rcn_A          221 AGQSGVGKSSLLNALL  236 (358)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCccHHHHHHHHh
Confidence            49 9999999999999

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=87.04  E-value=0.24  Score=37.80  Aligned_cols=15  Identities=40%  Similarity=0.662  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+++.++.
T Consensus        35 vG~~~vGKSsLin~l~   50 (228)
T 2qu8_A           35 SGAPNVGKSSFMNIVS   50 (228)
T ss_dssp             ECSTTSSHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            59 9999999999998

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=86.90  E-value=0.26  Score=40.01  Aligned_cols=15  Identities=40%  Similarity=0.698  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|..++.
T Consensus        14 vG~~nvGKSTLln~L~   29 (301)
T 1ega_A           14 VGRPNVGKSTLLNKLL   29 (301)
T ss_dssp             ECSSSSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=86.82  E-value=0.26  Score=36.86  Aligned_cols=15  Identities=20%  Similarity=0.426  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++++.
T Consensus        35 vG~~~vGKSsli~~l~   50 (201)
T 2hup_A           35 VGDASVGKTCVVQRFK   50 (201)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHh
Confidence            59 9999999999998

>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*

Probab=86.82  E-value=1.1  Score=39.29  Aligned_cols=15  Identities=7%  Similarity=0.107  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| +|+|||+|+..||
T Consensus       158 fgg~G~GKt~Ll~~Ia  173 (469)
T 2c61_A          158 FSASGLPHNEIALQIA  173 (469)
T ss_dssp             EECTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            68 9999999999998

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=86.69  E-value=0.26  Score=36.89  Aligned_cols=15  Identities=27%  Similarity=0.426  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++++.
T Consensus        36 vG~~~~GKSsLi~~l~   51 (204)
T 4gzl_A           36 VGDGAVGKTCLLISYT   51 (204)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHH
Confidence            59 9999999999998

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=86.65  E-value=0.26  Score=36.58  Aligned_cols=15  Identities=40%  Similarity=0.496  Sum_probs=13.9

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++++.
T Consensus        39 vG~~~~GKSsli~~l~   54 (199)
T 3l0i_B           39 IGDSGVGKSCLLLRFA   54 (199)
T ss_dssp             ECCTTSCCTTTTTSSB
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            59 9999999999987

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=86.65  E-value=0.21  Score=36.59  Aligned_cols=15  Identities=27%  Similarity=0.505  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++..++.
T Consensus        28 ~G~~~~GKssli~~l~   43 (189)
T 2x77_A           28 LGLDNAGKTSILYRLH   43 (189)
T ss_dssp             EEETTSSHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999997

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*

Probab=86.53  E-value=1.2  Score=39.39  Aligned_cols=15  Identities=33%  Similarity=0.581  Sum_probs=13.8

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| +|+|||.++.-++
T Consensus       171 fgg~GvGKT~L~~~l~  186 (498)
T 1fx0_B          171 FGGAGVGKTVLIMELI  186 (498)
T ss_dssp             EECSSSSHHHHHHHHH
T ss_pred             ecCCCCCchHHHHHHH
Confidence            69 9999999998887

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=86.42  E-value=0.26  Score=40.69  Aligned_cols=15  Identities=40%  Similarity=0.669  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+++.+++
T Consensus        62 ~G~~g~GKSTl~~~l~   77 (341)
T 2p67_A           62 TGTPGAGKSTFLEAFG   77 (341)
T ss_dssp             EECTTSCHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            49 9999999999998

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=86.40  E-value=0.28  Score=42.49  Aligned_cols=15  Identities=27%  Similarity=0.386  Sum_probs=13.9

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+++..+|
T Consensus       103 vG~~GsGKTTt~~kLA  118 (433)
T 3kl4_A          103 VGVQGSGKTTTAGKLA  118 (433)
T ss_dssp             CCCTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999998

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=86.33  E-value=0.29  Score=41.21  Aligned_cols=36  Identities=19%  Similarity=0.109  Sum_probs=23.8

Q ss_pred             CCCcccccCChhhHHHhhcC---c--cc-CCCcHHHHHHHHH
Q 036857           22 PATSNTIATDFDMNKALVDD---Y--WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        22 p~~~~~v~~~~~~k~~l~~~---~--~G-PGtGKT~la~aiA   57 (170)
                      +.+++++.+++..+.-....   +  -| +|+|||++.++++
T Consensus       116 ~~~l~~lg~~~~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~  157 (372)
T 2ewv_A          116 IPEFKKLGLPDKVLELCHRKMGLILVTGPTGSGKSTTIASMI  157 (372)
T ss_dssp             CCCHHHHCCCSSHHHHTTSSSEEEEEECSSSSSHHHHHHHHH
T ss_pred             cCCHhHcCCCHHHHHHhhcCCCEEEEECCCCCCHHHHHHHHH
Confidence            44677776655444322110   0  49 9999999999999

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=86.19  E-value=0.28  Score=36.40  Aligned_cols=15  Identities=33%  Similarity=0.412  Sum_probs=13.8

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++++.+.
T Consensus        26 vG~~~vGKTsLi~~l~   41 (196)
T 3llu_A           26 MGLRRSGKSSIQKVVF   41 (196)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999887

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=86.19  E-value=0.82  Score=36.14  Aligned_cols=14  Identities=43%  Similarity=0.693  Sum_probs=10.6

Q ss_pred             cc-CCCcHHH-HHHHH
Q 036857           43 WG-PYTGKSS-LIAAM   56 (170)
Q Consensus        43 ~G-PGtGKT~-la~ai   56 (170)
                      +| .|+|||+ +.+.+
T Consensus        34 tG~M~sGKTT~Llr~~   49 (219)
T 3e2i_A           34 TGSMFSGKSEELIRRL   49 (219)
T ss_dssp             EECTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 7999999 44544

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=86.15  E-value=0.31  Score=37.46  Aligned_cols=15  Identities=40%  Similarity=0.450  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|...+.
T Consensus        43 vG~~~vGKSSLl~r~~   58 (211)
T 2g3y_A           43 IGEQGVGKSTLANIFA   58 (211)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999997

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=86.10  E-value=0.47  Score=37.10  Aligned_cols=14  Identities=29%  Similarity=0.100  Sum_probs=13.1

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      + .|+|||++|-.+|
T Consensus        35 ~kGGvGKTT~a~~LA   49 (267)
T 3k9g_A           35 IKGGVGKSTSAIILA   49 (267)
T ss_dssp             SSSSSCHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHH
Confidence            5 9999999999998

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=86.09  E-value=0.42  Score=37.29  Aligned_cols=14  Identities=29%  Similarity=0.356  Sum_probs=13.0

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | .|+|||++|..+|
T Consensus         8 ~KGGvGKTT~a~nLA   22 (269)
T 1cp2_A            8 GKGGIGKSTTTQNLT   22 (269)
T ss_dssp             ECTTSSHHHHHHHHH
T ss_pred             cCCCCcHHHHHHHHH
Confidence            7 8999999999888

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=86.09  E-value=0.3  Score=39.67  Aligned_cols=15  Identities=33%  Similarity=0.428  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++++.+|
T Consensus       104 ~g~~G~GKTT~~~~la  119 (295)
T 1ls1_A          104 VGLQGSGKTTTAAKLA  119 (295)
T ss_dssp             ECCTTTTHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999999

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=86.07  E-value=0.22  Score=43.21  Aligned_cols=15  Identities=13%  Similarity=-0.055  Sum_probs=13.9

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+++..+|
T Consensus       248 ~G~pG~GKT~lal~~a  263 (503)
T 1q57_A          248 TSGSGMVMSTFVRQQA  263 (503)
T ss_dssp             EESSCHHHHHHHHHHH
T ss_pred             eecCCCCchHHHHHHH
Confidence            49 9999999999988

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=86.01  E-value=0.29  Score=39.84  Aligned_cols=15  Identities=40%  Similarity=0.488  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||+|.+.++
T Consensus        24 vG~nG~GKSTLl~~L~   39 (301)
T 2qnr_A           24 VGESGLGKSTLINSLF   39 (301)
T ss_dssp             EEETTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999988

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=86.00  E-value=0.22  Score=42.96  Aligned_cols=15  Identities=33%  Similarity=0.428  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+++..+|
T Consensus       105 vG~~GvGKTTla~~La  120 (432)
T 2v3c_C          105 VGIQGSGKTTTAAKLA  120 (432)
T ss_dssp             ECCSSSSTTHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=85.93  E-value=0.48  Score=39.37  Aligned_cols=14  Identities=29%  Similarity=0.418  Sum_probs=13.4

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | .|+|||++|-++|
T Consensus        23 gkGGvGKTt~a~~lA   37 (334)
T 3iqw_A           23 GKGGVGKTTTSCSLA   37 (334)
T ss_dssp             CSTTSSHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHH
Confidence            8 9999999999999

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=85.89  E-value=0.33  Score=36.77  Aligned_cols=15  Identities=27%  Similarity=0.514  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++.+++.
T Consensus        33 vG~~~vGKSsL~~~l~   48 (214)
T 3q3j_B           33 VGDVQCGKTAMLQVLA   48 (214)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHh
Confidence            59 9999999999998

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=85.80  E-value=0.52  Score=36.00  Aligned_cols=13  Identities=31%  Similarity=0.266  Sum_probs=12.4

Q ss_pred             CCCcHHHHHHHHH
Q 036857           45 PYTGKSSLIAAMA   57 (170)
Q Consensus        45 PGtGKT~la~aiA   57 (170)
                      .|+|||++|-.+|
T Consensus        14 GGvGKTt~a~~LA   26 (245)
T 3ea0_A           14 GGDGGSCIAANFA   26 (245)
T ss_dssp             TTSSHHHHHHHHH
T ss_pred             CCcchHHHHHHHH
Confidence            9999999999998

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=85.79  E-value=0.3  Score=38.97  Aligned_cols=15  Identities=33%  Similarity=0.738  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++..++.
T Consensus         9 vG~~n~GKSTLin~l~   24 (274)
T 3i8s_A            9 IGNPNSGKTTLFNQLT   24 (274)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            59 9999999999998

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=85.75  E-value=0.25  Score=40.87  Aligned_cols=15  Identities=27%  Similarity=0.501  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| .|+|||++.++++
T Consensus       177 ~G~~GsGKTTll~~l~  192 (330)
T 2pt7_A          177 CGGTGSGKTTYIKSIM  192 (330)
T ss_dssp             EESTTSCHHHHHHHGG
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999999

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=85.67  E-value=0.34  Score=36.71  Aligned_cols=15  Identities=33%  Similarity=0.525  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+++.++.
T Consensus        19 ~G~~~vGKSsli~~l~   34 (223)
T 3cpj_B           19 IGDSGVGKSNLLSRFT   34 (223)
T ss_dssp             ESCTTSSHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHh
Confidence            59 9999999999998

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=85.66  E-value=0.3  Score=40.78  Aligned_cols=15  Identities=33%  Similarity=0.534  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| .|+||||++++++
T Consensus       181 vG~sGsGKSTll~~l~  196 (361)
T 2gza_A          181 AGETGSGKTTLMKALM  196 (361)
T ss_dssp             EESSSSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999999

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=85.53  E-value=0.33  Score=40.05  Aligned_cols=15  Identities=47%  Similarity=0.530  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||+++..+|
T Consensus       111 vG~~G~GKTT~~~~LA  126 (320)
T 1zu4_A          111 VGVNGTGKTTSLAKMA  126 (320)
T ss_dssp             ESSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=85.46  E-value=0.26  Score=38.82  Aligned_cols=15  Identities=40%  Similarity=0.450  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+|||++.++|+
T Consensus        33 ~GpnGsGKSTll~~i~   48 (227)
T 1qhl_A           33 SGGNGAGKSTTMAAFV   48 (227)
T ss_dssp             HSCCSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999999

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=85.42  E-value=0.52  Score=35.93  Aligned_cols=13  Identities=15%  Similarity=0.215  Sum_probs=12.5

Q ss_pred             CCCcHHHHHHHHH
Q 036857           45 PYTGKSSLIAAMA   57 (170)
Q Consensus        45 PGtGKT~la~aiA   57 (170)
                      .|+|||+++..+|
T Consensus        10 GGvGKTT~a~~LA   22 (209)
T 3cwq_A           10 GGVGKTTTAVHLS   22 (209)
T ss_dssp             TTSSHHHHHHHHH
T ss_pred             CCCcHHHHHHHHH
Confidence            8999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	170
d1ixza_	247	c.37.1.20 (A:) AAA domain of cell division protein	7e-06
d1lv7a_	256	c.37.1.20 (A:) AAA domain of cell division protein	2e-05
d1r7ra3	265	c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p	3e-05

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

 Score = 42.5 bits (100), Expect = 7e-06
 Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 15/121 (12%)

Query: 28  IATDFDMNKALVD--DYWGPYTGKSSLIAAMADLDLKEFQSNSRSILVIE--DAV----- 78
           +A +  +        D+   + G  +  A + DL  +  + ++  I+ I+  DAV     
Sbjct: 62  VAGEARVPFITASGSDFVEMFVGVGA--ARVRDL-FETAKRHAPCIVFIDEIDAVGRKRG 118

Query: 79  -TSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHL 137
                 N      L+ LL  +DG         +++  T+  D +DP  LRP   D    +
Sbjct: 119 SGVGGGNDEREQTLNQLLVEMDGF--EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAI 176

Query: 138 S 138
            
Sbjct: 177 D 177

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 15/121 (12%)

Query: 28  IATDFDMNKALVD--DYWGPYTGKSSLIAAMADLDLKEFQSNSRSILVIE--DAVTSFES 83
           IA +  +    +   D+   + G  +  + + D+  ++ +  +  I+ I+  DAV     
Sbjct: 65  IAGEAKVPFFTISGSDFVEMFVGVGA--SRVRDM-FEQAKKAAPCIIFIDEIDAVGRQRG 121

Query: 84  NAYNSV------ALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHL 137
                        L+ +L  +DG   + G   I++  T+  D +DP  LRP   D    +
Sbjct: 122 AGLGGGHDEREQTLNQMLVEMDGFEGNEG--IIVIAATNRPDVLDPALLRPGRFDRQVVV 179

Query: 138 S 138
            
Sbjct: 180 G 180

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.6 bits (94), Expect = 3e-05
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 91  LSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTFRHY 145
           ++ +L  +DG+  S+     ++  T+  D IDP  LRP  +D   ++     +  
Sbjct: 131 INQILTEMDGM--STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 183

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	170
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	99.96
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	99.95
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.95
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.93
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	99.84
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	99.81
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	99.68
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	99.65
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	99.63
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	99.62
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	99.56
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	99.56
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	99.53
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	99.51
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	99.48
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	99.43
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	99.32
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	99.24
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	99.01
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	99.0
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	98.99
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	98.98
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	98.79
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	98.76
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	98.72
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	98.7
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	98.69
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	98.61
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	98.6
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.97
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.78
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	97.76
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.65
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	97.56
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.47
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.26
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.11
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.08
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.06
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.03
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.97
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.89
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.89
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.87
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.85
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.79
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.69
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.68
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.67
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.67
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.66
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.64
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.64
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.63
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.59
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.57
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.56
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.53
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.46
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.44
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.38
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.37
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.3
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.3
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.27
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.25
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.25
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.23
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.22
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.21
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.14
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.1
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.09
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.08
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	95.98
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	95.97
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	95.94
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	95.89
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.87
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	95.8
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	95.78
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	95.77
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	95.77
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	95.76
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	95.75
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.72
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	95.71
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.68
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	95.68
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	95.66
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	95.56
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	95.51
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	95.46
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	95.45
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.4
d1s2ma1	206	Putative ATP-dependent RNA helicase DHH1 {Baker's	95.34
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	95.26
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	95.25
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.22
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	95.19
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	95.18
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.16
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	95.07
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	95.02
d1ls1a2	207	GTPase domain of the signal sequence recognition p	94.94
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	94.76
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	94.74
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.71
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.7
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	94.53
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.44
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	94.4
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.3
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	94.21
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	94.18
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	94.09
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.07
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.02
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	93.99
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	93.93
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	93.89
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	93.83
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	93.79
d1okkd2	207	GTPase domain of the signal recognition particle r	93.74
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	93.67
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	93.56
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.23
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	93.17
d1nrjb_	209	Signal recognition particle receptor beta-subunit	93.16
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	93.16
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	92.96
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	92.93
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	92.85
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.79
d2j0sa1	222	Probable ATP-dependent RNA helicase DDX48 {Human (	92.65
d1vmaa2	213	GTPase domain of the signal recognition particle r	92.58
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	92.55
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	92.55
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	92.38
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	92.35
d2fh5b1	207	Signal recognition particle receptor beta-subunit	92.21
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	92.21
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	92.12
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	92.08
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	92.02
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	92.01
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	91.95
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	91.94
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	91.9
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	91.89
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	91.88
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	91.88
d2qy9a2	211	GTPase domain of the signal recognition particle r	91.81
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	91.75
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	91.7
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	91.69
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	91.64
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	91.52
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	91.32
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	91.25
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	91.25
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	91.24
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	91.24
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	91.13
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	91.11
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	91.08
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	91.07
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	91.0
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	90.97
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	90.93
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	90.74
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	90.65
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	90.62
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	90.62
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	90.62
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	90.62
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	90.6
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	90.59
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	90.56
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	90.5
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	90.5
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	90.48
d2g9na1	218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	90.39
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	90.33
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	90.22
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	90.07
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	90.04
d1veca_	206	DEAD box RNA helicase rck/p54 {Human (Homo sapiens	89.93
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	89.7
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	89.7
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	89.67
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	89.65
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	89.32
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	89.29
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	89.22
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	89.1
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	88.99
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	88.93
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	88.85
d1qdea_	212	Initiation factor 4a {Baker's yeast (Saccharomyces	88.7
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	88.67
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	88.49
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	88.49
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	88.37
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	88.13
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	88.1
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	88.04
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	87.93
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	87.53
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	87.24
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	87.18
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	86.81
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	86.73
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	86.56
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.49
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	86.09
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.99
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	85.86
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	85.78
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	85.39
d1j8yf2	211	GTPase domain of the signal sequence recognition p	85.34
d1hv8a1	208	Putative DEAD box RNA helicase {Archaeon Methanoco	85.34
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.21
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	84.91
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	84.48
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	84.38
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	84.27
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	83.47
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	83.26
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	83.23
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	82.53
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	82.33
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	82.19
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	81.85
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	81.24
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	80.61
d1xpua3	289	Transcription termination factor Rho, ATPase domai	80.5
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	80.26
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	80.11

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1.3e-28  Score=200.15  Aligned_cols=146  Identities=20%  Similarity=0.253  Sum_probs=110.9

Q ss_pred             CCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---c-----cccccccc---
Q 036857           21 HPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---D-----LDLKEFQS---   66 (170)
Q Consensus        21 ~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~-----~~l~~v~~---   66 (170)
                      ...+|++|++.+++|++|.+.+                      || ||||||++|+++|   .     ++.+.+..   
T Consensus         7 ~~~t~~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l~~~~~   86 (256)
T d1lv7a_           7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV   86 (256)
T ss_dssp             SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCC
T ss_pred             CCCCHHHHhchHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHhhhcch
Confidence            4568999999999999986543                      69 9999999999999   2     22222211   


Q ss_pred             ----------------cCceeEeeechhhhccCCc--------cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCC
Q 036857           67 ----------------NSRSILVIEDAVTSFESNA--------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHID  122 (170)
Q Consensus        67 ----------------~~p~il~iDEiD~~~~~~~--------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD  122 (170)
                                      .+||||||||+|.++..++        ...+.+++|++.+|+...  ..++++|+|||+++.||
T Consensus        87 g~~~~~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~--~~~v~vIatTn~~~~ld  164 (256)
T d1lv7a_          87 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRPDVLD  164 (256)
T ss_dssp             CCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS--SSCEEEEEEESCTTTSC
T ss_pred             hHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCC--CCCEEEEEeCCCcccCC
Confidence                            1299999999999987331        224568899999999865  56899999999999999


Q ss_pred             CCCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhhcC-CCCHHHHHHhh
Q 036857          123 PVPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAKI-QATPAEVPGEL  168 (170)
Q Consensus       123 ~AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~~-~~s~a~i~~~l  168 (170)
                      +|++||||||.+|+|++|+.  +..++..            +..+.... .+++++|..++
T Consensus       165 ~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~G~s~adi~~l~  225 (256)
T d1lv7a_         165 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLV  225 (256)
T ss_dssp             GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHH
T ss_pred             HhHcCCCCCCEEEECCCcCHHHHHHHHHHhccCCCcCcccCHHHHHHhCCCCCHHHHHHHH
Confidence            99999999999999999999  3334432            22333322 47778776554

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=7.9e-29  Score=200.28  Aligned_cols=146  Identities=19%  Similarity=0.252  Sum_probs=109.5

Q ss_pred             CCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH--------cccccc------
Q 036857           21 HPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA--------DLDLKE------   63 (170)
Q Consensus        21 ~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA--------~~~l~~------   63 (170)
                      ++.+|++|++.+.+|++|.+.+                      || ||||||++|+++|        .++.+.      
T Consensus         4 p~~~~~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~   83 (247)
T d1ixza_           4 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV   83 (247)
T ss_dssp             CSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCT
T ss_pred             CCCcHHHHccHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhhccc
Confidence            4569999999999999876543                      69 9999999999999        111111      


Q ss_pred             ---------c----cccCceeEeeechhhhccCCc--------cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCC
Q 036857           64 ---------F----QSNSRSILVIEDAVTSFESNA--------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHID  122 (170)
Q Consensus        64 ---------v----~~~~p~il~iDEiD~~~~~~~--------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD  122 (170)
                               +    ...+||||||||+|.++..++        .....+++|++.||++..  ..+++||+|||+++.||
T Consensus        84 g~~~~~l~~~f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~--~~~vivi~tTn~~~~ld  161 (247)
T d1ixza_          84 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDILD  161 (247)
T ss_dssp             THHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT--TCCEEEEEEESCGGGSC
T ss_pred             cHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCC--CCCEEEEEeCCCccccC
Confidence                     1    122399999999999987332        234578899999999865  56899999999999999


Q ss_pred             CCCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhhcC-CCCHHHHHHhh
Q 036857          123 PVPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAKI-QATPAEVPGEL  168 (170)
Q Consensus       123 ~AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~~-~~s~a~i~~~l  168 (170)
                      +|++||||||.+|+|+.|+.  +..+++.            +..+.... .+|+++|..++
T Consensus       162 ~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~lv  222 (247)
T d1ixza_         162 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLL  222 (247)
T ss_dssp             GGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHH
T ss_pred             HhHcCCCCCcEEEEECCcCHHHHHHHHHHHhcccCCccccCHHHHHHHCCCCCHHHHHHHH
Confidence            99999999999999999999  3344432            22233322 47777776553

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=5.6e-28  Score=195.68  Aligned_cols=144  Identities=19%  Similarity=0.224  Sum_probs=111.2

Q ss_pred             CCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---cc-----ccccccc----
Q 036857           23 ATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DL-----DLKEFQS----   66 (170)
Q Consensus        23 ~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~-----~l~~v~~----   66 (170)
                      .+|++|++.+.+|++|.+.+                       || ||||||++|+++|   ..     +.+.+..    
T Consensus         1 ~~~~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~~~~l~~~~~g   80 (258)
T d1e32a2           1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG   80 (258)
T ss_dssp             CCGGGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEECHHHHTTSCTT
T ss_pred             CChhhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhCCeEEEEEchhhcccccc
Confidence            36999999999999997764                       69 9999999999999   11     1111111    


Q ss_pred             ---------------cCceeEeeechhhhccC-----CccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCC
Q 036857           67 ---------------NSRSILVIEDAVTSFES-----NAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPL  126 (170)
Q Consensus        67 ---------------~~p~il~iDEiD~~~~~-----~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~All  126 (170)
                                     ..|||||+||+|.++..     ++.....++.+++.+++...  ..+++||+|||+++.+|+|++
T Consensus        81 ~~~~~l~~~f~~A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~vlvi~tTn~~~~ld~al~  158 (258)
T d1e32a2          81 ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSIDPALR  158 (258)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCC--SSCEEEEEEESCGGGSCGGGT
T ss_pred             cHHHHHHHHHHHHHhcCCeEEEehhhhhhccCCCCCCCchHHHHHHHhccccccccc--cCCccEEEeCCCccccchhhh
Confidence                           22999999999999972     23445678888888998865  578999999999999999999


Q ss_pred             CCCccceEEEcCCCCc--chHHHHH------------HHHHhhcC-CCCHHHHHHhh
Q 036857          127 RPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAKI-QATPAEVPGEL  168 (170)
Q Consensus       127 RpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~~-~~s~a~i~~~l  168 (170)
                      ||||||.+|++++|+.  +..+++.            +..+.... .+|+++|..+.
T Consensus       159 r~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~G~s~adl~~lv  215 (258)
T d1e32a2         159 RFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC  215 (258)
T ss_dssp             STTSSCEEEECCCCCHHHHHHHHHHTTTTSCBCTTCCHHHHHHHCTTCCHHHHHHHH
T ss_pred             hcccccceeECCCCCHHHHHHHhhhhccCcccccccchhhhhhcccCCCHHHHHHHH
Confidence            9999999999999999  3333321            33444333 58888887653

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=3.1e-27  Score=192.17  Aligned_cols=125  Identities=21%  Similarity=0.307  Sum_probs=95.0

Q ss_pred             CCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---cccc-----ccccc---
Q 036857           22 PATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDL-----KEFQS---   66 (170)
Q Consensus        22 p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l-----~~v~~---   66 (170)
                      ..+|++|++.+++|++|.+.+                       || ||||||++|+++|   +..+     +.+..   
T Consensus         3 ~~~f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~~~l~~~~~   82 (265)
T d1r7ra3           3 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF   82 (265)
T ss_dssp             CCSCSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECHHHHHTSCT
T ss_pred             CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEHHHhhhccc
Confidence            458999999999988887655                       69 9999999999999   2111     11111   


Q ss_pred             ----------------cCceeEeeechhhhccCC--------ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCC
Q 036857           67 ----------------NSRSILVIEDAVTSFESN--------AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHID  122 (170)
Q Consensus        67 ----------------~~p~il~iDEiD~~~~~~--------~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD  122 (170)
                                      .+||||||||+|.++..+        ....+.++.+++.||++..  ..++++|+|||+++.||
T Consensus        83 ~~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~v~vi~ttn~~~~ld  160 (265)
T d1r7ra3          83 GESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDIID  160 (265)
T ss_dssp             TTHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC--------CCEEEECCBSCTTTS
T ss_pred             cchHHHHHHHHHHHHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCC--CCCEEEEEeCCCchhCC
Confidence                            129999999999999722        1224467889999999976  46799999999999999


Q ss_pred             CCCCCCCccceEEEcCCCCc--chHHHH
Q 036857          123 PVPLRPSCMDMHFHLSSHTF--RHYLFE  148 (170)
Q Consensus       123 ~AllRpgR~d~~i~~~~p~~--~~~l~~  148 (170)
                      +|++||||||.+|++++|+.  +..++.
T Consensus       161 ~al~r~gRf~~~i~~~~p~~~~R~~il~  188 (265)
T d1r7ra3         161 PAILRPGRLDQLIYIPLPDEKSRVAILK  188 (265)
T ss_dssp             CGGGSSTTSEEEEECCCCCCHHHHHHHH
T ss_pred             HHHhCCCCccEEEEecchHHHHHHHHHH
Confidence            99999999999999999999  444443

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=99.84  E-value=4e-23  Score=172.56  Aligned_cols=98  Identities=15%  Similarity=0.150  Sum_probs=76.6

Q ss_pred             cc-CCCcHHHHHHHHH-----cccccccccc-----C-----------------ceeEeeechhhhccCC------ccch
Q 036857           43 WG-PYTGKSSLIAAMA-----DLDLKEFQSN-----S-----------------RSILVIEDAVTSFESN------AYNS   88 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-----~~~l~~v~~~-----~-----------------p~il~iDEiD~~~~~~------~~~~   88 (170)
                      || ||||||++|+++|     +..+..+...     .                 ||||||||||.+.+.+      ....
T Consensus       129 ~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~~~~G~~e~~~~~~f~~a~~~~ilf~DEid~~~~~r~~~~~~~~~~  208 (321)
T d1w44a_         129 TGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLKNVIGAAGGNTTSGGIS  208 (321)
T ss_dssp             ECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCTTTC-----------CC
T ss_pred             ECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhhcccchHHHHHHHHHHHHhhccEEEeehhhhhccccccCCCCCcch
Confidence            69 9999999999999     1222222221     1                 9999999999998733      2345


Q ss_pred             HHHHHHHHHhhchhccCCCCeEEEEeCCCC---CCCCCCCCCCCccceEEEcCCCCc
Q 036857           89 VALSALLKFVDGLWSSSGDGRILVMTTDYK---DHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus        89 ~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~---~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      ++++++|.+|||+..  ..+++||+|||+.   +.+|++++||||||+++++++||.
T Consensus       209 r~v~~lL~e~dg~~~--~~~v~viaatN~~~~~~~i~~~~~r~~Rf~~~v~v~~pd~  263 (321)
T d1w44a_         209 RGAFDLLSDIGAMAA--SRGCVVIASLNPTSNDDKIVELVKEASRSNSTSLVISTDV  263 (321)
T ss_dssp             HHHHHHHHHHHHHHH--HHTCEEEEECCCCCCCHHHHHHHHHHHHHSCSEEEEECSS
T ss_pred             hhhhhhhhhcccccc--CCCeEEEEeCCCcccccchhhhhhccCcccceeecCCCCh
Confidence            799999999999987  4689999999952   346667789999999999999998

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.81  E-value=4.9e-21  Score=153.88  Aligned_cols=106  Identities=21%  Similarity=0.336  Sum_probs=80.0

Q ss_pred             cc-CCCcHHHHHHHHH---cccccccc-------------------------ccCceeEeeechhhhccCC----ccchH
Q 036857           43 WG-PYTGKSSLIAAMA---DLDLKEFQ-------------------------SNSRSILVIEDAVTSFESN----AYNSV   89 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA---~~~l~~v~-------------------------~~~p~il~iDEiD~~~~~~----~~~~~   89 (170)
                      || ||||||++|+++|   +..+..+.                         ...||||||||+|.++..+    .....
T Consensus        46 ~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~g~~~~~~~~~i~~if~~A~~~~p~il~iDEid~l~~~~~~~~~~~~~  125 (246)
T d1d2na_          46 EGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNL  125 (246)
T ss_dssp             ECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHH
T ss_pred             ECcCCCCHHHHHHHHhhcccccccccccccccccccccchhhhhhhhhhhhhhcccceeehhhhhhHhhhcccccchhHH
Confidence            89 9999999999999   22111111                         0129999999999998732    23467


Q ss_pred             HHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCcchHHHHHH
Q 036857           90 ALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTFRHYLFEKI  150 (170)
Q Consensus        90 ~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~~~~l~~~~  150 (170)
                      .+++++..+|+.... +.+++||+|||+++.+|++.+| +|||.+|++|.+..++++.+.+
T Consensus       126 ~~~~ll~~l~~~~~~-~~~v~vi~tTn~~~~ld~~~~~-~rF~~~i~~P~~~~r~~il~~l  184 (246)
T d1d2na_         126 VLQALLVLLKKAPPQ-GRKLLIIGTTSRKDVLQEMEML-NAFSTTIHVPNIATGEQLLEAL  184 (246)
T ss_dssp             HHHHHHHHTTCCCST-TCEEEEEEEESCHHHHHHTTCT-TTSSEEEECCCEEEHHHHHHHH
T ss_pred             HHHHHHHHhcCCCcc-ccceeeeeccCChhhccchhhc-CccceEEecCCchhHHHHHHHH
Confidence            788999999998653 5578999999999999987665 7999999996666655555443

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=99.68  E-value=9.1e-17  Score=125.72  Aligned_cols=116  Identities=16%  Similarity=0.143  Sum_probs=83.5

Q ss_pred             CCCCCCcccccCChhhHHHhhcCc---------------cc-CCCcHHHHHHHHH-c--ccccccc--------------
Q 036857           19 FEHPATSNTIATDFDMNKALVDDY---------------WG-PYTGKSSLIAAMA-D--LDLKEFQ--------------   65 (170)
Q Consensus        19 ~~~p~~~~~v~~~~~~k~~l~~~~---------------~G-PGtGKT~la~aiA-~--~~l~~v~--------------   65 (170)
                      ..+|.+|+++++++++++++...+               || ||||||++|+++| .  .+...+.              
T Consensus         2 ~~RP~~~~divGqe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~~~~~~~~~~~~~~~~~~~~~~~~~   81 (238)
T d1in4a2           2 FLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAIL   81 (238)
T ss_dssp             TTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHH
T ss_pred             CCCCCcHHHcCChHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHhccCCCcccccCcccccHHHHHHHH
Confidence            457999999999999999886544               79 9999999999999 2  1111111              


Q ss_pred             --ccCceeEeeechhhhccCCccchHHHHHHHHHhhchh--------------ccCCCCeEEEEeCCCCCCCCCCCCCCC
Q 036857           66 --SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLW--------------SSSGDGRILVMTTDYKDHIDPVPLRPS  129 (170)
Q Consensus        66 --~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~--------------~~~~~~~~vi~tTN~~~~lD~AllRpg  129 (170)
                        ....+++|+||+|.+..      .....++..++...              .....++++|++||++..+++++++  
T Consensus        82 ~~~~~~~~~~ide~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~at~~~~~~~~~~~~--  153 (238)
T d1in4a2          82 TSLERGDVLFIDEIHRLNK------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--  153 (238)
T ss_dssp             HHCCTTCEEEEETGGGCCH------HHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHT--
T ss_pred             HhhccCCchHHHHHHHhhh------HHHhhcccceeeeeeeeeecCcccccccccCCCCeEEEEecCCCcccccccee--
Confidence              11189999999998743      11222333322110              0012478999999999999999997  


Q ss_pred             ccceEEEcCCCCc
Q 036857          130 CMDMHFHLSSHTF  142 (170)
Q Consensus       130 R~d~~i~~~~p~~  142 (170)
                      ||+..+.++.|+.
T Consensus       154 r~~~~~~~~~~~~  166 (238)
T d1in4a2         154 RFGIILELDFYTV  166 (238)
T ss_dssp             TCSEEEECCCCCH
T ss_pred             eeeEEEEecCCCH
Confidence            9999999999998

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.65  E-value=8.6e-17  Score=132.38  Aligned_cols=98  Identities=16%  Similarity=0.266  Sum_probs=69.0

Q ss_pred             cc-CCCcHHHHHHHHH--------cccccccccc--------------------------CceeEeeechhhhccCCcc-
Q 036857           43 WG-PYTGKSSLIAAMA--------DLDLKEFQSN--------------------------SRSILVIEDAVTSFESNAY-   86 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA--------~~~l~~v~~~--------------------------~p~il~iDEiD~~~~~~~~-   86 (170)
                      || ||||||++||++|        .++.+.+...                          .||||||||+|++.+.+.. 
T Consensus        55 ~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~f~~a~~~~~~~~~~~IIf~DEIdki~~~~~~~  134 (309)
T d1ofha_          55 IGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYS  134 (309)
T ss_dssp             ECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCC
T ss_pred             ECCCCCCHHHHHHHHhhccccchhcccccccccceeEeeeccccccccchhhhcccccccCCceEEehhhhhhhhhccCc
Confidence            69 9999999999999        2222222111                          1899999999999873322 


Q ss_pred             -----chHHHHHHHHHhhchhccCC------CCeEEEEe----CCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857           87 -----NSVALSALLKFVDGLWSSSG------DGRILVMT----TDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus        87 -----~~~~~~~ll~~lDg~~~~~~------~~~~vi~t----TN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                           ....+++||..+||......      .++++++|    +|.+..++|+++  ||||..+.++.|+.
T Consensus       135 ~~~~~~~gv~~~LL~~~dg~~~~~~~~~i~~s~ilfi~~ga~~~~~~~~~~p~l~--~R~~~~i~~~~~~~  203 (309)
T d1ofha_         135 GADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQ--GRLPIRVELTALSA  203 (309)
T ss_dssp             SSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHH--HTCCEEEECCCCCH
T ss_pred             ccchhhhHHHHHhhHHhcCCEEecCCeEEEccceeEEeccchhhcCcccchhhhh--hhhheeeeccCCCH
Confidence                 12367789999998643211      23455555    456666777766  79999999999999

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=99.63  E-value=1.3e-15  Score=119.33  Aligned_cols=115  Identities=19%  Similarity=0.145  Sum_probs=80.3

Q ss_pred             CCCCCcccccCChhhHHHhhcCc---------------cc-CCCcHHHHHHHHH---cccccccccc-------------
Q 036857           20 EHPATSNTIATDFDMNKALVDDY---------------WG-PYTGKSSLIAAMA---DLDLKEFQSN-------------   67 (170)
Q Consensus        20 ~~p~~~~~v~~~~~~k~~l~~~~---------------~G-PGtGKT~la~aiA---~~~l~~v~~~-------------   67 (170)
                      .+|.+|++++++++++++|...+               || ||||||++|+++|   ..++..+...             
T Consensus         3 ~RP~~~ddivGq~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (239)
T d1ixsb2           3 LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILA   82 (239)
T ss_dssp             CCCCSGGGSCSCHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH
T ss_pred             cCCCCHHHhCCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCeEeccCCccccchhhHHHHH
Confidence            46999999999999998876443               79 9999999999999   2222221111             


Q ss_pred             ----CceeEeeechhhhccCCccchHHHHHHHHHhhchh--------------ccCCCCeEEEEeCCCCCCCCCCCCCCC
Q 036857           68 ----SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLW--------------SSSGDGRILVMTTDYKDHIDPVPLRPS  129 (170)
Q Consensus        68 ----~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~--------------~~~~~~~~vi~tTN~~~~lD~AllRpg  129 (170)
                          ..+|+++||+|.+..      .....++..++...              ......++++++||++...+++.+|  
T Consensus        83 ~~~~~~~i~~iDe~~~~~~------~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~--  154 (239)
T d1ixsb2          83 NSLEEGDILFIDEIHRLSR------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS--  154 (239)
T ss_dssp             TTCCTTCEEEEETGGGCCH------HHHHHHHHHHHHSEEEEECSCTTCCCEEEEECCCCEEEEEESCCSSCSCGGGG--
T ss_pred             hhccCCCeeeeecccccch------hHHHhhhhhhhhhhhhhhhccchhhhhcccCCCCEEEEeeccCcccccchhhc--
Confidence                178999999998743      22233444433210              0012356788899999999988888  


Q ss_pred             ccceEEEcCCCCc
Q 036857          130 CMDMHFHLSSHTF  142 (170)
Q Consensus       130 R~d~~i~~~~p~~  142 (170)
                      |+...+.+..|+.
T Consensus       155 ~~~~~~~~~~~~~  167 (239)
T d1ixsb2         155 RFGIVEHLEYYTP  167 (239)
T ss_dssp             GCSEEEECCCCCH
T ss_pred             ccceeeEeeccCh
Confidence            7777777877776

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=1e-15  Score=119.83  Aligned_cols=114  Identities=17%  Similarity=0.139  Sum_probs=85.5

Q ss_pred             cCCCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc---c-------------------
Q 036857           16 SNKFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL---D-------------------   60 (170)
Q Consensus        16 ~~~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~---~-------------------   60 (170)
                      |++...|.+|+++++++++++.|...+           || ||||||++|+++| .+   +                   
T Consensus         1 W~eky~P~~~~diig~~~~~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   80 (252)
T d1sxje2           1 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKL   80 (252)
T ss_dssp             CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC----------------
T ss_pred             CCcccCCCCHHHccCcHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHhhcCccccccccccccccccccchh
Confidence            456889999999999999999987766           79 9999999999999 10   0                   


Q ss_pred             -ccccc-------------cc-----------------------------CceeEeeechhhhccCCccchHHHHHHHHH
Q 036857           61 -LKEFQ-------------SN-----------------------------SRSILVIEDAVTSFESNAYNSVALSALLKF   97 (170)
Q Consensus        61 -l~~v~-------------~~-----------------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~   97 (170)
                       +....             ..                             ...+++|||+|.+..      .....++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiide~d~l~~------~~~~~l~~~  154 (252)
T d1sxje2          81 ELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK------DAQAALRRT  154 (252)
T ss_dssp             --CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH------HHHHHHHHH
T ss_pred             hhhhccCCccceeeecccccCCcceeeehhhhhhhhhhhhhhhcccccCCCceEEEecccccccc------ccchhhhcc
Confidence             00000             00                             044899999998733      234555565


Q ss_pred             hhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857           98 VDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus        98 lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      ++..    ..++.+|+|||+++.++++++.  |+ ..|+|+.|+.
T Consensus       155 ~e~~----~~~~~~Il~tn~~~~i~~~l~s--R~-~~i~~~~~~~  192 (252)
T d1sxje2         155 MEKY----SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSD  192 (252)
T ss_dssp             HHHS----TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCH
T ss_pred             cccc----cccccceeeeccccchhhhhhc--ch-heeeecccch
Confidence            6543    4578899999999999999985  87 5899988888

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=1e-14  Score=114.27  Aligned_cols=115  Identities=10%  Similarity=0.166  Sum_probs=77.5

Q ss_pred             CCCCCCCCcccccCChhhHHHhhcCc---------------------------cc-CCCcHHHHHHHHH---c-----cc
Q 036857           17 NKFEHPATSNTIATDFDMNKALVDDY---------------------------WG-PYTGKSSLIAAMA---D-----LD   60 (170)
Q Consensus        17 ~~~~~p~~~~~v~~~~~~k~~l~~~~---------------------------~G-PGtGKT~la~aiA---~-----~~   60 (170)
                      ++...|.+|+++++++..+++|...+                           || ||||||++|+++|   .     ++
T Consensus         5 ~eky~P~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~~~~~~~   84 (253)
T d1sxja2           5 TVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQN   84 (253)
T ss_dssp             HHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             ccCcCCCCHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHhhhhccc
Confidence            34578999999999999998875421                           79 9999999999999   1     11


Q ss_pred             ccccc-------------c------------------cCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCe
Q 036857           61 LKEFQ-------------S------------------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGR  109 (170)
Q Consensus        61 l~~v~-------------~------------------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~  109 (170)
                      .+.+.             .                  ..+.++++||+|.+....   +.....+++.....    ...+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~~~~~~~---~~~~~~~~~~~~~~----~~~i  157 (253)
T d1sxja2          85 ASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD---RGGVGQLAQFCRKT----STPL  157 (253)
T ss_dssp             TTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS---TTHHHHHHHHHHHC----SSCE
T ss_pred             cccchhhHHHHHHHHHHhhcchhhhhhhhhhhcccccccceEEEeeeccccccch---hhhhHHHhhhhccc----cccc
Confidence            11000             0                  017799999999886632   23334444443322    2355


Q ss_pred             EEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          110 ILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       110 ~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      +++++++....+++  +|  |....|+|+.|+.
T Consensus       158 i~i~~~~~~~~~~~--l~--~~~~~i~f~~~~~  186 (253)
T d1sxja2         158 ILICNERNLPKMRP--FD--RVCLDIQFRRPDA  186 (253)
T ss_dssp             EEEESCTTSSTTGG--GT--TTSEEEECCCCCH
T ss_pred             cccccccccccccc--cc--ceeeeeeccccch
Confidence            55555666666765  44  7788999999998

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=4.2e-15  Score=115.28  Aligned_cols=136  Identities=18%  Similarity=0.287  Sum_probs=95.3

Q ss_pred             cCCCCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-cc------------cccc--------
Q 036857           16 SNKFEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-DL------------DLKE--------   63 (170)
Q Consensus        16 ~~~~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~~------------~l~~--------   63 (170)
                      +++...|.+|+++++++++++.|...+          || ||||||++|+++| ++            +.+.        
T Consensus         4 w~ekyrP~~~~divg~~~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~~~~~~~~~~~~   83 (227)
T d1sxjc2           4 WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVR   83 (227)
T ss_dssp             HHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHH
T ss_pred             hhhhhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChhHHHHHHHHHhhcCCCcceeEEecccccCCeeeee
Confidence            445779999999999999999987765          79 9999999999999 11            0000        


Q ss_pred             -----------ccccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccc
Q 036857           64 -----------FQSNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMD  132 (170)
Q Consensus        64 -----------v~~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d  132 (170)
                                 +......++++||+|.+..      ...+.++..|+..    ....+++++||.+..+++++.+  |+ 
T Consensus        84 ~~~~~~~~~~~~~~~~~kiiiiDe~d~~~~------~~~~~Ll~~le~~----~~~~~~~~~~~~~~~i~~~i~s--r~-  150 (227)
T d1sxjc2          84 NQIKDFASTRQIFSKGFKLIILDEADAMTN------AAQNALRRVIERY----TKNTRFCVLANYAHKLTPALLS--QC-  150 (227)
T ss_dssp             THHHHHHHBCCSSSCSCEEEEETTGGGSCH------HHHHHHHHHHHHT----TTTEEEEEEESCGGGSCHHHHT--TS-
T ss_pred             cchhhccccccccCCCeEEEEEeccccchh------hHHHHHHHHhhhc----ccceeeccccCcHHHhHHHHHH--HH-
Confidence                       0000156999999998743      3456777777765    3588999999999999999987  54 


Q ss_pred             eEEEcCCCCcchHHHHHHHHHhh--cCCCCHHHHH
Q 036857          133 MHFHLSSHTFRHYLFEKIEERLA--KIQATPAEVP  165 (170)
Q Consensus       133 ~~i~~~~p~~~~~l~~~~~~~~~--~~~~s~a~i~  165 (170)
                      ..+.|..|+.. .+...+...+.  +..+++..+.
T Consensus       151 ~~i~~~~~~~~-~i~~~l~~I~~~e~i~i~~~~l~  184 (227)
T d1sxjc2         151 TRFRFQPLPQE-AIERRIANVLVHEKLKLSPNAEK  184 (227)
T ss_dssp             EEEECCCCCHH-HHHHHHHHHHHTTTCCBCHHHHH
T ss_pred             hhhcccccccc-ccccccccccccccccCCHHHHH
Confidence            57788888772 22333333332  2245554443

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.53  E-value=6.1e-15  Score=114.78  Aligned_cols=113  Identities=18%  Similarity=0.182  Sum_probs=86.3

Q ss_pred             CCCCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-c-------ccccccc------------
Q 036857           17 NKFEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-D-------LDLKEFQ------------   65 (170)
Q Consensus        17 ~~~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~-------~~l~~v~------------   65 (170)
                      ++...|.+|+++++++++++++...+          || ||||||++|+++| .       .+...+.            
T Consensus        15 ~~ky~P~~~~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l~~~~~~~~~~e~n~s~~~~~~~~~~   94 (231)
T d1iqpa2          15 VEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIRE   94 (231)
T ss_dssp             HHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHH
T ss_pred             HHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHHhcccCCCeeEEecCcccchhHHHH
Confidence            56789999999999999999988776          69 9999999999999 1       1111111            


Q ss_pred             ------------ccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccce
Q 036857           66 ------------SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDM  133 (170)
Q Consensus        66 ------------~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~  133 (170)
                                  ...+.|+++||+|.+..      .....|+..++.-    ...+.+|++||+...+++++..  |+ .
T Consensus        95 ~~~~~~~~~~~~~~~~~iilide~d~~~~------~~~~~ll~~l~~~----~~~~~~i~~~n~~~~i~~~l~s--R~-~  161 (231)
T d1iqpa2          95 KVKEFARTKPIGGASFKIIFLDEADALTQ------DAQQALRRTMEMF----SSNVRFILSCNYSSKIIEPIQS--RC-A  161 (231)
T ss_dssp             HHHHHHHSCCGGGCSCEEEEEETGGGSCH------HHHHHHHHHHHHT----TTTEEEEEEESCGGGSCHHHHH--TE-E
T ss_pred             HHHHHHhhhhccCCCceEEeehhhhhcch------hHHHHHhhhcccC----CcceEEEeccCChhhchHhHhC--cc-c
Confidence                        01188999999997754      2344566666544    3578899999999999999985  66 4


Q ss_pred             EEEcCCCCc
Q 036857          134 HFHLSSHTF  142 (170)
Q Consensus       134 ~i~~~~p~~  142 (170)
                      .+.+..|+.
T Consensus       162 ~i~~~~~~~  170 (231)
T d1iqpa2         162 IFRFRPLRD  170 (231)
T ss_dssp             EEECCCCCH
T ss_pred             cccccccch
Confidence            588888887

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=1.3e-14  Score=112.74  Aligned_cols=114  Identities=15%  Similarity=0.128  Sum_probs=86.6

Q ss_pred             cCCCCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-ccc-------cccccc----------
Q 036857           16 SNKFEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-DLD-------LKEFQS----------   66 (170)
Q Consensus        16 ~~~~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~~~-------l~~v~~----------   66 (170)
                      +++...|..|++++++++++++|...+          || ||||||++|+++| .+.       ...+..          
T Consensus         5 w~eKyrP~~~~d~ig~~~~~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~~~~~~~~i~   84 (224)
T d1sxjb2           5 WVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVR   84 (224)
T ss_dssp             HHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHH
T ss_pred             hHhHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHHHHhccccccccccccccccCCceehh
Confidence            456789999999999999999988776          79 9999999999999 110       111100          


Q ss_pred             ---------------cCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCcc
Q 036857           67 ---------------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCM  131 (170)
Q Consensus        67 ---------------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~  131 (170)
                                     ....++++||+|.+..      .....++..++..    .....++++||..+.+.++++.  |+
T Consensus        85 ~~~~~~~~~~~~~~~~~~kviiiDe~d~~~~------~~~~~ll~~~e~~----~~~~~~i~~~~~~~~i~~~l~s--r~  152 (224)
T d1sxjb2          85 NQIKHFAQKKLHLPPGKHKIVILDEADSMTA------GAQQALRRTMELY----SNSTRFAFACNQSNKIIEPLQS--QC  152 (224)
T ss_dssp             THHHHHHHBCCCCCTTCCEEEEEESGGGSCH------HHHHTTHHHHHHT----TTTEEEEEEESCGGGSCHHHHT--TS
T ss_pred             hHHHHHHHhhccCCCcceEEEEEecccccch------hHHHHHhhhcccc----ccceeeeeccCchhhhhhHHHH--HH
Confidence                           0156999999998744      3345566666554    4578889999999999999986  65


Q ss_pred             ceEEEcCCCCc
Q 036857          132 DMHFHLSSHTF  142 (170)
Q Consensus       132 d~~i~~~~p~~  142 (170)
                       ..|+|+.|+.
T Consensus       153 -~~i~~~~~~~  162 (224)
T d1sxjb2         153 -AILRYSKLSD  162 (224)
T ss_dssp             -EEEECCCCCH
T ss_pred             -HHhhhcccch
Confidence             4699999988

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=1.3e-13  Score=108.59  Aligned_cols=111  Identities=21%  Similarity=0.246  Sum_probs=85.1

Q ss_pred             CCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc--------------------------
Q 036857           19 FEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL--------------------------   59 (170)
Q Consensus        19 ~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~--------------------------   59 (170)
                      ..+|.+|++++++++.++.+...+           || ||||||++|+++| .+                          
T Consensus         5 KyrP~~~~dlig~~~~~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~   84 (239)
T d1njfa_           5 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFV   84 (239)
T ss_dssp             HTCCSSGGGSCSCHHHHHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHHTCCT
T ss_pred             hhCCCCHHHccChHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCccccccCccccchHHHHHHcCCCC
Confidence            468999999999999999887765           69 9999999999998 00                          


Q ss_pred             cccccccc----------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCC
Q 036857           60 DLKEFQSN----------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDY  117 (170)
Q Consensus        60 ~l~~v~~~----------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~  117 (170)
                      ++..+...                      ...|++|||+|.+.      ....+.|+..|+..    +.+..+|++||.
T Consensus        85 ~~~~~~~~~~~~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~------~~~q~~Llk~lE~~----~~~~~~il~tn~  154 (239)
T d1njfa_          85 DLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------RHSFNALLKTLEEP----PEHVKFLLATTD  154 (239)
T ss_dssp             TEEEEETTCSSSHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC------HHHHHHHHHHHHSC----CTTEEEEEEESC
T ss_pred             eEEEecchhcCCHHHHHHHHHHHHhccccCCCEEEEEECcccCC------HHHHHHHHHHHhcC----CCCeEEEEEcCC
Confidence            11111000                      05699999999873      34456788888753    457889999999


Q ss_pred             CCCCCCCCCCCCccceEEEcCCCCc
Q 036857          118 KDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       118 ~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      ++.+.+++..  |+ ..+.|+.|+.
T Consensus       155 ~~~i~~~i~S--Rc-~~i~~~~~~~  176 (239)
T d1njfa_         155 PQKLPVTILS--RC-LQFHLKALDV  176 (239)
T ss_dssp             GGGSCHHHHT--TS-EEEECCCCCH
T ss_pred             ccccChhHhh--hh-cccccccCcH
Confidence            9999999986  65 5788888887

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=1.4e-13  Score=106.49  Aligned_cols=114  Identities=18%  Similarity=0.225  Sum_probs=83.0

Q ss_pred             cCCCCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-cc--------ccccccc---------
Q 036857           16 SNKFEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-DL--------DLKEFQS---------   66 (170)
Q Consensus        16 ~~~~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~~--------~l~~v~~---------   66 (170)
                      +++...|.+|+++++++++++.+...+          || ||||||++++++| ++        ....+..         
T Consensus         2 w~~ky~P~~~~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~   81 (237)
T d1sxjd2           2 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV   81 (237)
T ss_dssp             HHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH
T ss_pred             cchhhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChHHHHHHHHHHHcCCcccccchhheeccccccchHH
Confidence            345688999999999999999988766          79 9999999999999 10        0000000         


Q ss_pred             -------------------------cCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCC
Q 036857           67 -------------------------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHI  121 (170)
Q Consensus        67 -------------------------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~l  121 (170)
                                               ....|+++||+|.+..      ...+.++..++-.    .....+|.++|....+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe~d~l~~------~~~~~l~~~~~~~----~~~~~~i~~~~~~~~~  151 (237)
T d1sxjd2          82 REKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA------DAQSALRRTMETY----SGVTRFCLICNYVTRI  151 (237)
T ss_dssp             TTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH------HHHHHHHHHHHHT----TTTEEEEEEESCGGGS
T ss_pred             HHHHHHHhhhhhhhhhHHHHhhccccCceEEEEecccccCH------HHHHHHhhccccc----cccccccccccccccc
Confidence                                     0044899999998854      2334444444432    3567788889999999


Q ss_pred             CCCCCCCCccceEEEcCCCCc
Q 036857          122 DPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       122 D~AllRpgR~d~~i~~~~p~~  142 (170)
                      .+++..  |+ ..|.|..|+.
T Consensus       152 ~~~l~s--r~-~~i~f~~~~~  169 (237)
T d1sxjd2         152 IDPLAS--QC-SKFRFKALDA  169 (237)
T ss_dssp             CHHHHH--HS-EEEECCCCCH
T ss_pred             cccccc--hh-hhhccccccc
Confidence            999875  76 6889998888

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.32  E-value=9.6e-13  Score=107.89  Aligned_cols=111  Identities=23%  Similarity=0.255  Sum_probs=80.7

Q ss_pred             CcccccCChhhHHHhhcC--------c--cc-CCCcHHHHHHHHHcc----------ccc--------------------
Q 036857           24 TSNTIATDFDMNKALVDD--------Y--WG-PYTGKSSLIAAMADL----------DLK--------------------   62 (170)
Q Consensus        24 ~~~~v~~~~~~k~~l~~~--------~--~G-PGtGKT~la~aiA~~----------~l~--------------------   62 (170)
                      +|.+|++++.+|+.+.-.        +  .| ||||||++||++|++          .+.                    
T Consensus         5 ~f~~I~Gq~~~kral~laa~~~~~h~vLl~G~pG~GKT~lar~~~~iLp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (333)
T d1g8pa_           5 PFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIR   84 (333)
T ss_dssp             CGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEE
T ss_pred             ChhhccCcHHHHHHHHHHHhccCCCeEEEECCCCccHHHHHHHHHHhCCCchhhccCccccCccccccchhhccccCccc
Confidence            799999999999865421        1  59 999999999999810          000                    


Q ss_pred             ------c---------ccc----------c------------CceeEeeechhhhccCCccchHHHHHHHHHhh------
Q 036857           63 ------E---------FQS----------N------------SRSILVIEDAVTSFESNAYNSVALSALLKFVD------   99 (170)
Q Consensus        63 ------~---------v~~----------~------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lD------   99 (170)
                            .         +..          .            ...|+|+||++.+      ....++.|++.|+      
T Consensus        85 ~~~~~~~~~~~~~~~~l~G~~d~~~~~~~g~~~~~~G~l~~A~~gvl~iDEi~~~------~~~~~~aLl~~me~~~v~i  158 (333)
T d1g8pa_          85 KPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLL------EDHIVDLLLDVAQSGENVV  158 (333)
T ss_dssp             ECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGS------CHHHHHHHHHHHHHSEEEE
T ss_pred             ccCceeeccCCCCcccccCcchhhhccccCcceeeccccccccccEeecccHHHH------HHHHHHHHhhhhcCCeEEe
Confidence                  0         000          0            0469999999765      4567888999886      


Q ss_pred             ---chhccCCCCeEEEEeCCC-CCCCCCCCCCCCccceEEEcCCCCc
Q 036857          100 ---GLWSSSGDGRILVMTTDY-KDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       100 ---g~~~~~~~~~~vi~tTN~-~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                         |.....+...++++|+|. ...++++++.  |||.++.+++|..
T Consensus       159 ~r~g~~~~~p~~f~liaa~Np~~~~l~~~llD--Rf~~~i~v~~~~~  203 (333)
T d1g8pa_         159 ERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRD  203 (333)
T ss_dssp             CCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCS
T ss_pred             cccCceecCCCCEEEEEecCccccccccchhh--hhcceeeccCcch
Confidence               222223456789999994 4579999996  9999999999875

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=99.24  E-value=1.2e-12  Score=109.89  Aligned_cols=97  Identities=16%  Similarity=0.147  Sum_probs=58.9

Q ss_pred             cc-CCCcHHHHHHHHH--------cccccccccc-------CceeEeeechhhhccCCccc-----hHHHHHHHHHhhch
Q 036857           43 WG-PYTGKSSLIAAMA--------DLDLKEFQSN-------SRSILVIEDAVTSFESNAYN-----SVALSALLKFVDGL  101 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA--------~~~l~~v~~~-------~p~il~iDEiD~~~~~~~~~-----~~~~~~ll~~lDg~  101 (170)
                      || ||||||++|+++|        .++.+...+.       .+.+.++||++.........     -..+..+.+.+||.
T Consensus       160 ~g~~~~gk~~~~~~~~~~~~~~~i~in~s~~rs~~~l~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~DeiD~l~~~~dg~  239 (362)
T d1svma_         160 KGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGS  239 (362)
T ss_dssp             ECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTTTTCCCCSHHHHHHTTHHHHHCS
T ss_pred             ECCCCCCHHHHHHHHHHHcCCCEEEEECcchhhHHHHHhHHHHHHHHHHHHHHhhhhccCCCCeEEEehHhhcccccCCc
Confidence            79 9999999999999        2222222111       15556666665544311100     11223344555654


Q ss_pred             hccCCC----C------eEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857          102 WSSSGD----G------RILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       102 ~~~~~~----~------~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      ...+.+    .      ..+|+|||.   +|.+++||||||..+.+..|+.
T Consensus       240 ~~~~~~~~~~~~~~~~~~p~i~ttN~---~~~~~~r~~Rf~~~i~~~~~~~  287 (362)
T d1svma_         240 VKVNLEKKHLNKRTQIFPPGIVTMNE---YSVPKTLQARFVKQIDFRPKDY  287 (362)
T ss_dssp             SCEEECCSSSCCEEECCCCEEEEECS---CCCCHHHHTTEEEEEECCCCHH
T ss_pred             chhhhhhhhhchhhhccCCceeeccc---ccccccccccCceEEeecCCCc
Confidence            211111    1      138889995   6888899999999999999886

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.01  E-value=2.2e-10  Score=89.04  Aligned_cols=70  Identities=7%  Similarity=0.023  Sum_probs=44.7

Q ss_pred             ceeEeeechhhhccCCccchHHHHH---HHHHhhchhccCCCCeEEEEeCCCCCC------CCCCCCCCCccceEEEcCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSA---LLKFVDGLWSSSGDGRILVMTTDYKDH------IDPVPLRPSCMDMHFHLSS  139 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~---ll~~lDg~~~~~~~~~~vi~tTN~~~~------lD~AllRpgR~d~~i~~~~  139 (170)
                      +.++++||+|.+.............   +.+.+.....  .....+|+.+|..+.      .++++.+  |+..+++|+.
T Consensus       133 ~~~~iide~d~l~~~~~~~~~~~~~l~~l~~~l~~~~~--~~~~~~i~i~~~~~~~~~~~~~~~~~~~--r~~~~i~f~~  208 (287)
T d1w5sa2         133 YLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDG--VNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPA  208 (287)
T ss_dssp             EEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTS--CCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCC
T ss_pred             ccccceeEEEEeccccccchhHHHHHHHHHHhcchhhc--ccceeEEeecccHHHHHHHHhhccchhc--ccceeeeccC
Confidence            7788999999998754444333333   3344444433  235566666665543      3456554  8999999999


Q ss_pred             CCc
Q 036857          140 HTF  142 (170)
Q Consensus       140 p~~  142 (170)
                      ++.
T Consensus       209 y~~  211 (287)
T d1w5sa2         209 YKS  211 (287)
T ss_dssp             CCH
T ss_pred             CcH
Confidence            888

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=5.9e-10  Score=85.84  Aligned_cols=61  Identities=15%  Similarity=0.062  Sum_probs=51.1

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      ..|++|||+|.+-      ....+.|+..|+.-    +.++++|++||+++.|.++++.  |+ ..|.|+.|+.
T Consensus       109 ~kviIide~d~l~------~~a~n~Llk~lEep----~~~~~fIl~t~~~~~ll~tI~S--Rc-~~i~~~~~~~  169 (207)
T d1a5ta2         109 AKVVWVTDAALLT------DAAANALLKTLEEP----PAETWFFLATREPERLLATLRS--RC-RLHYLAPPPE  169 (207)
T ss_dssp             CEEEEESCGGGBC------HHHHHHHHHHHTSC----CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCH
T ss_pred             cceEEechhhhhh------hhhhHHHHHHHHhh----cccceeeeeecChhhhhhhhcc--ee-EEEecCCCCH
Confidence            6699999999873      35678888888875    4689999999999999999985  76 7999998887

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=7e-10  Score=90.78  Aligned_cols=109  Identities=17%  Similarity=0.204  Sum_probs=75.4

Q ss_pred             ccccCChhhHHHhhcCc-------------------cc-CCCcHHHHHHHHH--------cccccccccc----------
Q 036857           26 NTIATDFDMNKALVDDY-------------------WG-PYTGKSSLIAAMA--------DLDLKEFQSN----------   67 (170)
Q Consensus        26 ~~v~~~~~~k~~l~~~~-------------------~G-PGtGKT~la~aiA--------~~~l~~v~~~----------   67 (170)
                      +.|++++..++.+...+                   .| ||||||.+|+++|        .++++.....          
T Consensus        22 ~~viGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d~s~~~~~~~~~~l~g~~  101 (315)
T d1r6bx3          22 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAP  101 (315)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCC
T ss_pred             CeecChHHHHHHHHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHHHhhccCCeeEeccccccchhhhhhhcccC
Confidence            45678888887775544                   39 9999999999999        2233332211          


Q ss_pred             -------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhc-------cCCCCeEEEEeCCCCC--
Q 036857           68 -------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWS-------SSGDGRILVMTTDYKD--  119 (170)
Q Consensus        68 -------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~-------~~~~~~~vi~tTN~~~--  119 (170)
                                         ..+|++|||+|...      ....+.||+.+|.-.-       ..-.+.++|+|||--.  
T Consensus       102 ~gy~g~~~~~~l~~~~~~~~~~vvl~DeieKa~------~~V~~~lLqild~G~ltd~~Gr~vdf~n~iiI~Tsnig~~~  175 (315)
T d1r6bx3         102 PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH------PDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRE  175 (315)
T ss_dssp             SCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSC------HHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-
T ss_pred             CCccccccCChhhHHHHhCccchhhhccccccc------chHhhhhHHhhccceecCCCCCccCccceEEEeccchhhHH
Confidence                               16899999999863      3567788888863210       0124678999999321  


Q ss_pred             -----------------------CCCCCCCCCCccceEEEcCCCCc
Q 036857          120 -----------------------HIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       120 -----------------------~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                                             .+.|.|+  +|+|..+.|...+.
T Consensus       176 i~~~~~~~~~~~~~~~~~~~l~~~f~pEfl--nRid~ii~f~~l~~  219 (315)
T d1r6bx3         176 TERKSIGLIHQDNSTDAMEEIKKIFTPEFR--NRLDNIIWFDHLST  219 (315)
T ss_dssp             ----------------CHHHHHHHSCHHHH--TTCSEEEECCCCCH
T ss_pred             HHhhhccchhhhhhHhHHHHHHHhcCHHHH--hhhhhhhcccchhh
Confidence                                   2556666  69999999988777

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=98.98  E-value=4.3e-10  Score=92.25  Aligned_cols=92  Identities=18%  Similarity=0.334  Sum_probs=65.7

Q ss_pred             cc-CCCcHHHHHHHHH-----------ccccccccc-----------------------------cCceeEeeechhhhc
Q 036857           43 WG-PYTGKSSLIAAMA-----------DLDLKEFQS-----------------------------NSRSILVIEDAVTSF   81 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-----------~~~l~~v~~-----------------------------~~p~il~iDEiD~~~   81 (170)
                      +| ||||||.+|+++|           .++++....                             +..+|++|||||...
T Consensus        59 ~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~~~~~~~~L~g~~~gyvG~~~~~~l~~~~~~~p~~Vvl~DEieK~~  138 (315)
T d1qvra3          59 LGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAH  138 (315)
T ss_dssp             BSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHCSSEEEEESSGGGSC
T ss_pred             ECCCcchHHHHHHHHHHHhcCCCcceEEEeccccccchhhhhhcCCCCCCcCcccCChHHHHHHhCCCcEEEEehHhhcC
Confidence            49 9999999999999           122222211                             015999999999863


Q ss_pred             cCCccchHHHHHHHHHhhchhcc-------CCCCeEEEEeCCC--------------------------CCCCCCCCCCC
Q 036857           82 ESNAYNSVALSALLKFVDGLWSS-------SGDGRILVMTTDY--------------------------KDHIDPVPLRP  128 (170)
Q Consensus        82 ~~~~~~~~~~~~ll~~lDg~~~~-------~~~~~~vi~tTN~--------------------------~~~lD~AllRp  128 (170)
                            ....+.|+..+|.-.-.       .-.+.++|+|||-                          .+.+.|.++  
T Consensus       139 ------~~v~~~ll~~l~~g~~~~~~gr~v~~~~~i~i~tsnlG~~~i~~~~~~~~~~~~~~~~~~~~l~~~f~pEfl--  210 (315)
T d1qvra3         139 ------PDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFL--  210 (315)
T ss_dssp             ------HHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHH--
T ss_pred             ------HHHHHHHHHHhccCceeCCCCcEecCcceEEEEecccChHHHhhhcccccchhhhhHHHHHHHHhhcCHHHH--
Confidence                  35667777777643211       1236799999994                          356888888  


Q ss_pred             CccceEEEcCCCCc
Q 036857          129 SCMDMHFHLSSHTF  142 (170)
Q Consensus       129 gR~d~~i~~~~p~~  142 (170)
                      +|||..+.|...+.
T Consensus       211 nRid~Ii~F~~L~~  224 (315)
T d1qvra3         211 NRLDEIVVFRPLTK  224 (315)
T ss_dssp             HTCSBCCBCCCCCH
T ss_pred             hcCCeeeeccchhh
Confidence            59999999988777

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.79  E-value=8.2e-09  Score=79.87  Aligned_cols=110  Identities=15%  Similarity=0.238  Sum_probs=62.8

Q ss_pred             cc-CCCcHHHHHHHHH----cccccccc---------------c----------cCceeEeeechhhhccCCccchHHHH
Q 036857           43 WG-PYTGKSSLIAAMA----DLDLKEFQ---------------S----------NSRSILVIEDAVTSFESNAYNSVALS   92 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA----~~~l~~v~---------------~----------~~p~il~iDEiD~~~~~~~~~~~~~~   92 (170)
                      || ||||||.|++|++    ..+...+.               .          ....+|+|||+|.+.++    .....
T Consensus        42 ~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~iDDi~~i~~~----~~~~~  117 (213)
T d1l8qa2          42 YGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGK----ERTQI  117 (213)
T ss_dssp             ECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTC----HHHHH
T ss_pred             ECCCCCcHHHHHHHHHHHhccCccceEEechHHHHHHHHHHHHccchhhHHHHHhhccchhhhhhhhhcCc----hHHHH
Confidence            89 9999999999999    11111110               0          01689999999998653    23334


Q ss_pred             HHHHHhhchhccCCCCeEEEEeCCCCCCCC---CCCCCCCccc--eEEEcCCCCcchHHHHHHHHHhh--cCCCCHH
Q 036857           93 ALLKFVDGLWSSSGDGRILVMTTDYKDHID---PVPLRPSCMD--MHFHLSSHTFRHYLFEKIEERLA--KIQATPA  162 (170)
Q Consensus        93 ~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD---~AllRpgR~d--~~i~~~~p~~~~~l~~~~~~~~~--~~~~s~a  162 (170)
                      .+...++....  .+..+++.++..|..++   +.+..  |+.  ..++++ |+. +...+.++..+.  ...++.+
T Consensus       118 ~lf~lin~~~~--~~~~iiits~~~p~~l~~~~~dL~S--RL~~g~~~~i~-p~d-~~~~~iL~~~a~~rgl~l~~~  188 (213)
T d1l8qa2         118 EFFHIFNTLYL--LEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIE-LDN-KTRFKIIKEKLKEFNLELRKE  188 (213)
T ss_dssp             HHHHHHHHHHH--TTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECC-CCH-HHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHHHHHHhh--ccceEEEecCCcchhccccchHHHH--HhhCceEEEEC-CCc-HHHHHHHHHHHHHcCCCCCHH
Confidence            45556666654  24555665556777665   33332  443  566665 443 223334444443  3345553

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=4.7e-08  Score=78.44  Aligned_cols=134  Identities=16%  Similarity=0.199  Sum_probs=79.9

Q ss_pred             cccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH------------------cccccccccc--------
Q 036857           25 SNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA------------------DLDLKEFQSN--------   67 (170)
Q Consensus        25 ~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA------------------~~~l~~v~~~--------   67 (170)
                      ++.+++-+.--+++...+          .| ||+|||++++.+|                  .+++..+...        
T Consensus        17 ld~~igRd~Ei~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~liag~~~~g~~e   96 (268)
T d1r6bx2          17 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFE   96 (268)
T ss_dssp             SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHH
T ss_pred             CCcccChHHHHHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechHhccCccchhHH
Confidence            455666666555565555          59 9999999999999                  1222222111        


Q ss_pred             -------------CceeEeeechhhhccCCc--cchHHHHHHHHHhhchhccCCCCeEEEEeCC-----CCCCCCCCCCC
Q 036857           68 -------------SRSILVIEDAVTSFESNA--YNSVALSALLKFVDGLWSSSGDGRILVMTTD-----YKDHIDPVPLR  127 (170)
Q Consensus        68 -------------~p~il~iDEiD~~~~~~~--~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN-----~~~~lD~AllR  127 (170)
                                   .+.|+|+||++.+++..+  .+......+|.   ...+  .+++-+|+||.     ....-|+||.|
T Consensus        97 ~r~~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lk---p~L~--rg~i~vIgatT~eey~~~~e~d~al~r  171 (268)
T d1r6bx2          97 KRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIK---PLLS--SGKIRVIGSTTYQEFSNIFEKDRALAR  171 (268)
T ss_dssp             HHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHS---SCSS--SCCCEEEEEECHHHHHCCCCCTTSSGG
T ss_pred             HHHHHHHHHhhccCCceEEecchHHHhcCCCCCCccccHHHHhh---HHHh--CCCCeEEEeCCHHHHHHHHhhcHHHHh
Confidence                         168999999999987322  22333444443   2222  24666777665     44577999996


Q ss_pred             CCccceEEEcCCCCcc--hHHHHHHHHHh---hcCCCCHHHHHH
Q 036857          128 PSCMDMHFHLSSHTFR--HYLFEKIEERL---AKIQATPAEVPG  166 (170)
Q Consensus       128 pgR~d~~i~~~~p~~~--~~l~~~~~~~~---~~~~~s~a~i~~  166 (170)
                        || .+|.+..|+..  ..++.......   .+..++++-+..
T Consensus       172 --rF-~~I~V~Eps~e~t~~IL~~~~~~~e~~h~v~~~~~al~~  212 (268)
T d1r6bx2         172 --RF-QKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRA  212 (268)
T ss_dssp             --GE-EEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred             --hh-cccccCCCCHHHHHHHHHHhhHHHhccCCEEeChHHHHH
Confidence              66 57889999982  22233222222   234566655543

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.72  E-value=7.8e-09  Score=79.27  Aligned_cols=87  Identities=14%  Similarity=0.150  Sum_probs=67.0

Q ss_pred             cc-CCCcHHHHHHHHH---------ccccccccccC-----------------------ceeEeeechhhhccCCccchH
Q 036857           43 WG-PYTGKSSLIAAMA---------DLDLKEFQSNS-----------------------RSILVIEDAVTSFESNAYNSV   89 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA---------~~~l~~v~~~~-----------------------p~il~iDEiD~~~~~~~~~~~   89 (170)
                      || ||||||++|+.+|         .-++..+....                       .-|+++||+|.+      ...
T Consensus        21 ~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~~I~Id~IR~i~~~~~~~~~~~~~KviIId~ad~l------~~~   94 (198)
T d2gnoa2          21 NGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERM------TQQ   94 (198)
T ss_dssp             ECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGB------CHH
T ss_pred             ECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCcCCCCHHHHHHHHHHHhhCcccCCCEEEEEeCcccc------chh
Confidence            79 9999999999999         11233222211                       569999999987      446


Q ss_pred             HHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857           90 ALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus        90 ~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                      ..++||..|+.-    +.+.++|++||+++.|.|+++.  |+ ..+.|+.|..
T Consensus        95 aqNaLLK~LEEP----p~~t~fiLit~~~~~ll~TI~S--RC-~~i~~~~p~~  140 (198)
T d2gnoa2          95 AANAFLKALEEP----PEYAVIVLNTRRWHYLLPTIKS--RV-FRVVVNVPKE  140 (198)
T ss_dssp             HHHHTHHHHHSC----CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCHH
T ss_pred             hhhHHHHHHhCC----CCCceeeeccCChhhCHHHHhc--ce-EEEeCCCchH
Confidence            678888888764    5689999999999999999986  65 6788887765

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.70  E-value=1.8e-08  Score=77.36  Aligned_cols=66  Identities=21%  Similarity=0.116  Sum_probs=38.8

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCC---CCCCCCCCCCCCcc-ceEEEcCCCCc
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDY---KDHIDPVPLRPSCM-DMHFHLSSHTF  142 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~---~~~lD~AllRpgR~-d~~i~~~~p~~  142 (170)
                      ..++++|++|.+..   ........++..+....   ...+.+|+++|.   .+.+++++.+  |+ ...|+|+.|+.
T Consensus       125 ~~~~~~~~~d~~~~---~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~--r~~~~~i~~~~~~~  194 (276)
T d1fnna2         125 YMFLVLDDAFNLAP---DILSTFIRLGQEADKLG---AFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTK  194 (276)
T ss_dssp             CEEEEEETGGGSCH---HHHHHHHHHTTCHHHHS---SCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBH
T ss_pred             ccccchhHHHHhhh---hhhhhHHHHHhcccccc---ccceEEeecCCchhhhhhcchhhhh--hhcchhccccchhH
Confidence            67788899887643   11122222222222222   346777888886   4577887765  43 35688888777

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=8.8e-09  Score=79.31  Aligned_cols=110  Identities=15%  Similarity=0.163  Sum_probs=65.7

Q ss_pred             CcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH------------------cccccccccc-------
Q 036857           24 TSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA------------------DLDLKEFQSN-------   67 (170)
Q Consensus        24 ~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA------------------~~~l~~v~~~-------   67 (170)
                      .++-+++-++.-+++...+          .| ||+|||++++.+|                  .+++..+-..       
T Consensus        20 ~ld~~igRd~Ei~~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~LiAg~~~rG~~   99 (195)
T d1jbka_          20 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEF   99 (195)
T ss_dssp             CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHH
T ss_pred             CCCCCcCcHHHHHHHHHHHhccCCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHHhccCCccHHH
Confidence            3556667666666666555          69 9999999999999                  1222221111       


Q ss_pred             --------------C-ceeEeeechhhhccCCccc-hHHHHH-HHHHhhchhccCCCCeEEEEeCCC-----CCCCCCCC
Q 036857           68 --------------S-RSILVIEDAVTSFESNAYN-SVALSA-LLKFVDGLWSSSGDGRILVMTTDY-----KDHIDPVP  125 (170)
Q Consensus        68 --------------~-p~il~iDEiD~~~~~~~~~-~~~~~~-ll~~lDg~~~~~~~~~~vi~tTN~-----~~~lD~Al  125 (170)
                                    . +.||||||+..+++..+.. ...... |.-.|..      .++-+|+||..     .-.-|+||
T Consensus       100 E~rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~r------g~l~~IgatT~eey~~~~e~d~aL  173 (195)
T d1jbka_         100 EERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR------GELHCVGATTLDEYRQYIEKDAAL  173 (195)
T ss_dssp             HHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT------TSCCEEEEECHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHHHhcCCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHhC------CCceEEecCCHHHHHHHHHcCHHH
Confidence                          0 5699999999998732211 111222 2233321      35555655542     23559999


Q ss_pred             CCCCccceEEEcCCCCc
Q 036857          126 LRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       126 lRpgR~d~~i~~~~p~~  142 (170)
                      .|  || .+|.+..|+.
T Consensus       174 ~r--rF-~~I~V~Ep~~  187 (195)
T d1jbka_         174 ER--RF-QKVFVAEPSV  187 (195)
T ss_dssp             HT--TE-EEEECCCCCH
T ss_pred             Hh--cC-CEeecCCCCH
Confidence            97  77 4677888876

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=98.61  E-value=3.7e-08  Score=82.77  Aligned_cols=109  Identities=18%  Similarity=0.264  Sum_probs=57.1

Q ss_pred             cccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH------------------cccccccccc--------
Q 036857           25 SNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA------------------DLDLKEFQSN--------   67 (170)
Q Consensus        25 ~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA------------------~~~l~~v~~~--------   67 (170)
                      ++-+++-+.--+++...+          -| ||+|||+++..+|                  .+++..+...        
T Consensus        21 ld~~~gr~~ei~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~~g~~e  100 (387)
T d1qvra2          21 LDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFE  100 (387)
T ss_dssp             SCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHH
T ss_pred             CCCCcCcHHHHHHHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhhcccCcchhHH
Confidence            555666666556666555          59 9999999999888                  1222222111        


Q ss_pred             --------------CceeEeeechhhhccCCcc-chHHHHHHH-HHhhchhccCCCCeEEEEeCC----CCCCCCCCCCC
Q 036857           68 --------------SRSILVIEDAVTSFESNAY-NSVALSALL-KFVDGLWSSSGDGRILVMTTD----YKDHIDPVPLR  127 (170)
Q Consensus        68 --------------~p~il~iDEiD~~~~~~~~-~~~~~~~ll-~~lDg~~~~~~~~~~vi~tTN----~~~~lD~AllR  127 (170)
                                    .+.||||||+..+++.++. .......+| -.|..     ++-.+|-+||.    ..+. |+||.|
T Consensus       101 ~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~r-----g~~~~I~~tT~~ey~~~e~-d~al~r  174 (387)
T d1qvra2         101 ERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR-----GELRLIGATTLDEYREIEK-DPALER  174 (387)
T ss_dssp             HHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT-----TCCCEEEEECHHHHHHHTT-CTTTCS
T ss_pred             HHHHHHHHHhccCCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHhC-----CCcceeeecCHHHHHHhcc-cHHHHH
Confidence                          1678999999999873322 122223333 22311     33334444443    4444 999998


Q ss_pred             CCccceEEEcCCCCc
Q 036857          128 PSCMDMHFHLSSHTF  142 (170)
Q Consensus       128 pgR~d~~i~~~~p~~  142 (170)
                        ||. .|.+..|+.
T Consensus       175 --rF~-~v~v~ep~~  186 (387)
T d1qvra2         175 --RFQ-PVYVDEPTV  186 (387)
T ss_dssp             --CCC-CEEECCCCH
T ss_pred             --hcc-cccCCCCcH
Confidence              775 678889998

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=98.60  E-value=4.9e-08  Score=81.31  Aligned_cols=98  Identities=20%  Similarity=0.237  Sum_probs=60.7

Q ss_pred             cc-CCCcHHHHHHHHH---c-----cccccccc-------------------------cCceeEeeechhhhccCC----
Q 036857           43 WG-PYTGKSSLIAAMA---D-----LDLKEFQS-------------------------NSRSILVIEDAVTSFESN----   84 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA---~-----~~l~~v~~-------------------------~~p~il~iDEiD~~~~~~----   84 (170)
                      .| .|||||.+||++|   +     .+.+.+..                         ...+|+++||+|...+..    
T Consensus        74 iGPTGvGKTElAk~LA~~~~~~~ir~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~v~~~~~~iv~lDEieK~~~~s~~~~  153 (364)
T d1um8a_          74 IGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRS  153 (364)
T ss_dssp             ECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------
T ss_pred             eCCCCccHHHHHHHHHhhcccceeehhhhhcccchhhHhhhccchhhhhhhchhHHHHhhcccchhhhhhhhcccccccc
Confidence            49 9999999999999   1     11111111                         117899999999987621    


Q ss_pred             ----ccchHHHHHHHHHhhchhcc---------CCCCeEEEEeCCC----------------------------------
Q 036857           85 ----AYNSVALSALLKFVDGLWSS---------SGDGRILVMTTDY----------------------------------  117 (170)
Q Consensus        85 ----~~~~~~~~~ll~~lDg~~~~---------~~~~~~vi~tTN~----------------------------------  117 (170)
                          .....+.+.||+.+|+....         ...+.+++.|+|-                                  
T Consensus       154 ~~~d~a~~~V~~~lLqild~~~~~~~~~~gr~~~~~~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (364)
T d1um8a_         154 ITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKK  233 (364)
T ss_dssp             ------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTT
T ss_pred             ccccccchHHHHhhhhhhcCceeccCCCCCCcCCcceeEEEeehhhhhhhcccchhhhhhhhhhcccccccccccccchh
Confidence                13345788899999953210         0124567777774                                  


Q ss_pred             ---------------CCCCCCCCCCCCccceEEEcCCCCc
Q 036857          118 ---------------KDHIDPVPLRPSCMDMHFHLSSHTF  142 (170)
Q Consensus       118 ---------------~~~lD~AllRpgR~d~~i~~~~p~~  142 (170)
                                     ...+-|.|+  ||||..+.|..-+.
T Consensus       234 ~~~~~~~~~~~~~~~~~~f~PEf~--gRi~~iv~f~~L~~  271 (364)
T d1um8a_         234 EQEAILHLVQTHDLVTYGLIPELI--GRLPVLSTLDSISL  271 (364)
T ss_dssp             TTTTSGGGCCHHHHHHTTCCHHHH--TTCCEEEECCCCCH
T ss_pred             hhhhhhccccHHHHhhhhhHHHHH--HHhcchhhHhhhhH
Confidence                           112556666  89999999998888

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.97  E-value=5.2e-06  Score=59.99  Aligned_cols=14  Identities=36%  Similarity=0.759  Sum_probs=13.8

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||+|||+++++++
T Consensus         7 G~~G~GKSTLl~~i~   21 (178)
T d1ye8a1           7 GEPGVGKTTLVKKIV   21 (178)
T ss_dssp             CCTTSSHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHH
Confidence            9 9999999999999

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.78  E-value=0.00016  Score=54.52  Aligned_cols=34  Identities=24%  Similarity=0.099  Sum_probs=25.6

Q ss_pred             CcccccCChhhHHHhhcCc------cc-CCCcHHHHHHHHH
Q 036857           24 TSNTIATDFDMNKALVDDY------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        24 ~~~~v~~~~~~k~~l~~~~------~G-PGtGKT~la~aiA   57 (170)
                      .-++.++-++.-+++.+..      +| ||+|||++++.++
T Consensus        10 ~~~~f~GR~~el~~l~~~~~~~i~i~G~~G~GKTsLl~~~~   50 (283)
T d2fnaa2          10 NRKDFFDREKEIEKLKGLRAPITLVLGLRRTGKSSIIKIGI   50 (283)
T ss_dssp             SGGGSCCCHHHHHHHHHTCSSEEEEEESTTSSHHHHHHHHH
T ss_pred             ChhhCCChHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHH
Confidence            3566667666666665543      79 9999999999988

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.76  E-value=2.6e-05  Score=60.89  Aligned_cols=15  Identities=20%  Similarity=0.211  Sum_probs=14.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||||||.+|++|.
T Consensus        29 ~Ge~GtGK~~~A~~ih   44 (247)
T d1ny5a2          29 TGESGVGKEVVARLIH   44 (247)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            69 9999999999998

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.65  E-value=3.9e-06  Score=64.35  Aligned_cols=15  Identities=47%  Similarity=0.589  Sum_probs=14.7

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      || ||||||++|+++|
T Consensus        38 ~GpPGtGKT~la~~la   53 (273)
T d1gvnb_          38 GGQPGSGKTSLRSAIF   53 (273)
T ss_dssp             ECCTTSCTHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            79 9999999999999

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.56  E-value=6.2e-06  Score=69.94  Aligned_cols=15  Identities=27%  Similarity=0.410  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||||||.+||++|
T Consensus        55 iGPTGvGKTlLAr~LA   70 (443)
T d1g41a_          55 IGPTGVGKTEIARRLA   70 (443)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=0.00037  Score=49.18  Aligned_cols=15  Identities=40%  Similarity=0.594  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||||||+++++++
T Consensus         7 tG~~GtGKTtl~~~i~   22 (189)
T d2i3ba1           7 TGPPGVGKTTLIHKAS   22 (189)
T ss_dssp             ESCCSSCHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHH
Confidence            49 9999999999999

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.26  E-value=4.2e-05  Score=54.33  Aligned_cols=15  Identities=40%  Similarity=0.614  Sum_probs=14.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| |||||||+|++||
T Consensus        13 ~G~~GsGKTTla~~La   28 (192)
T d1lw7a2          13 LGGESSGKSVLVNKLA   28 (192)
T ss_dssp             ECCTTSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=8e-05  Score=51.73  Aligned_cols=19  Identities=32%  Similarity=0.427  Sum_probs=16.1

Q ss_pred             cc-CCCcHHHHHHHHH-cccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDL   61 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l   61 (170)
                      -| |||||||+|+++| .+++
T Consensus         8 ~G~~GsGKSTvak~La~~L~~   28 (169)
T d1kaga_           8 VGPMGAGKSTIGRQLAQQLNM   28 (169)
T ss_dssp             ECCTTSCHHHHHHHHHHHTTC
T ss_pred             ECCCCCCHHHHHHHHHHHhCC
Confidence            39 9999999999999 4444

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.08  E-value=8.8e-05  Score=52.53  Aligned_cols=14  Identities=29%  Similarity=0.527  Sum_probs=13.9

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||+||||+|+++|
T Consensus        13 G~~GsGKTTia~~La   27 (183)
T d1m8pa3          13 GYMNSGKDAIARALQ   27 (183)
T ss_dssp             CSTTSSHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHH
Confidence            9 9999999999999

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.06  E-value=9.2e-05  Score=52.41  Aligned_cols=19  Identities=37%  Similarity=0.462  Sum_probs=16.0

Q ss_pred             cc-CCCcHHHHHHHHH-cccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDL   61 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l   61 (170)
                      -| |||||||+|++|| .+++
T Consensus        10 ~G~pGsGKTTia~~La~~l~~   30 (173)
T d1rkba_          10 TGTPGVGKTTLGKELASKSGL   30 (173)
T ss_dssp             ECSTTSSHHHHHHHHHHHHCC
T ss_pred             ECCCCCCHHHHHHHHHHHHCC
Confidence            49 9999999999999 4444

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.00032  Score=54.55  Aligned_cols=44  Identities=11%  Similarity=0.358  Sum_probs=26.8

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHI  121 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~l  121 (170)
                      |.|+++||.=+-+.     ..+...+++.+..+.    .+..+|+.|.+.+.+
T Consensus       158 p~ililDEpts~LD-----~~~~~~i~~~l~~l~----~~~Tvi~itH~l~~~  201 (241)
T d2pmka1         158 PKILIFDEATSALD-----YESEHVIMRNMHKIC----KGRTVIIIAHRLSTV  201 (241)
T ss_dssp             CSEEEECCCCSCCC-----HHHHHHHHHHHHHHH----TTSEEEEECSSGGGG
T ss_pred             cchhhhhCCccccC-----HHHHHHHHHHHHHHh----CCCEEEEEECCHHHH
Confidence            99999999844332     333444555555553    255667777766544

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.97  E-value=0.00012  Score=51.37  Aligned_cols=15  Identities=33%  Similarity=0.328  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+||||+|+.+|
T Consensus         8 ~G~~GsGKTTva~~L~   23 (176)
T d2bdta1           8 TGPAGVGKSTTCKRLA   23 (176)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.89  E-value=0.0011  Score=49.63  Aligned_cols=15  Identities=33%  Similarity=0.450  Sum_probs=14.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||+|||+++..+|
T Consensus        32 ~G~pGsGKT~l~~qia   47 (242)
T d1tf7a2          32 TGATGTGKTLLVSRFV   47 (242)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHH
Confidence            79 9999999999999

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.89  E-value=0.00036  Score=54.71  Aligned_cols=54  Identities=17%  Similarity=0.231  Sum_probs=33.0

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLS  138 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~  138 (170)
                      |.|+++||.-+-+.     ..+-..+++.+..+.    .+..+|+.|.+++.+     +  ++|+.+.+.
T Consensus       173 p~ililDEpts~LD-----~~t~~~i~~~l~~l~----~~~TvI~itH~~~~~-----~--~~D~ii~l~  226 (255)
T d2hyda1         173 PPILILDEATSALD-----LESESIIQEALDVLS----KDRTTLIVAHRLSTI-----T--HADKIVVIE  226 (255)
T ss_dssp             CSEEEEESTTTTCC-----HHHHHHHHHHHHHHT----TTSEEEEECSSGGGT-----T--TCSEEEEEE
T ss_pred             CCEEEEeCccccCC-----HHHHHHHHHHHHHHh----cCCEEEEEeCCHHHH-----H--hCCEEEEEE
Confidence            99999999965543     233445556565553    245566677665443     3  567666664

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.87  E-value=0.00089  Score=52.34  Aligned_cols=15  Identities=27%  Similarity=0.348  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      || +|+|||++|+.+.
T Consensus        50 ~GmgGiGKTtLA~~v~   65 (277)
T d2a5yb3          50 HGRAGSGKSVIASQAL   65 (277)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            89 9999999999986

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.85  E-value=0.00064  Score=53.11  Aligned_cols=54  Identities=17%  Similarity=0.244  Sum_probs=30.7

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLS  138 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~  138 (170)
                      |.|+++||.=+-+.     ..+...+++.|..+..    +..+|+.|.+.+.+     +  ++|+.+.+.
T Consensus       171 p~ililDEpts~LD-----~~~~~~i~~~l~~l~~----~~Tvi~itH~l~~~-----~--~~D~v~vl~  224 (253)
T d3b60a1         171 SPILILDEATSALD-----TESERAIQAALDELQK----NRTSLVIAHRLSTI-----E--QADEIVVVE  224 (253)
T ss_dssp             CSEEEEETTTSSCC-----HHHHHHHHHHHHHHHT----TSEEEEECSCGGGT-----T--TCSEEEEEE
T ss_pred             CCEEEeccccccCC-----HHHHHHHHHHHHHhcc----CCEEEEEECCHHHH-----H--hCCEEEEEE
Confidence            99999999854433     2333445555555542    44566666654433     3  456555554

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.00021  Score=50.59  Aligned_cols=15  Identities=33%  Similarity=0.505  Sum_probs=14.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||||||++|+++|
T Consensus        12 ~G~~GsGKsT~a~~La   27 (171)
T d1knqa_          12 MGVSGSGKSAVASEVA   27 (171)
T ss_dssp             ECSTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999999

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00016  Score=52.30  Aligned_cols=14  Identities=29%  Similarity=0.499  Sum_probs=13.9

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||+||||+|++||
T Consensus        26 G~pGSGKTTiAk~La   40 (195)
T d1x6va3          26 GLSGAGKTTVSMALE   40 (195)
T ss_dssp             SSCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHH
Confidence            9 9999999999999

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.68  E-value=0.00027  Score=50.09  Aligned_cols=15  Identities=47%  Similarity=0.700  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| |||||||+|+++|
T Consensus        10 ~G~~GsGKSTia~~La   25 (176)
T d1zp6a1          10 SGHPGSGKSTIAEALA   25 (176)
T ss_dssp             EECTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999999

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.67  E-value=0.00029  Score=51.46  Aligned_cols=15  Identities=27%  Similarity=0.494  Sum_probs=14.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|++||
T Consensus         8 ~GlpgsGKSTla~~L~   23 (213)
T d1bifa1           8 VGLPARGKTYISKKLT   23 (213)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999999

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.67  E-value=0.0003  Score=49.83  Aligned_cols=15  Identities=47%  Similarity=0.643  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+||||+|+.||
T Consensus        11 ~G~~GsGKTT~~~~La   26 (174)
T d1y63a_          11 TGTPGTGKTSMAEMIA   26 (174)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHH
Confidence            49 9999999999999

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.66  E-value=0.0003  Score=49.58  Aligned_cols=15  Identities=27%  Similarity=0.510  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|+++|
T Consensus         9 ~G~~GsGKsTva~~L~   24 (178)
T d1qhxa_           9 NGGSSAGKSGIVRCLQ   24 (178)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999999

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.64  E-value=0.0011  Score=51.30  Aligned_cols=14  Identities=43%  Similarity=0.629  Sum_probs=13.8

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | .||||||+.+.++
T Consensus        33 GpsGsGKSTLl~~i~   47 (232)
T d2awna2          33 GPSGCGKSTLLRMIA   47 (232)
T ss_dssp             CCTTSSHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHh
Confidence            9 9999999999999

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.64  E-value=0.00032  Score=48.83  Aligned_cols=15  Identities=33%  Similarity=0.492  Sum_probs=13.9

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|+.++
T Consensus         8 ~G~pGsGKTTla~~L~   23 (152)
T d1ly1a_           8 IGCPGSGKSTWAREFI   23 (152)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999986

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.0014  Score=51.09  Aligned_cols=56  Identities=13%  Similarity=0.180  Sum_probs=32.6

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLS  138 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~  138 (170)
                      |.|+++||.=+-+.     ..+...+.+.+..+..  ..+..+|+.|.+.+.+     +  ++|+.+.+.
T Consensus       170 p~ililDEpTs~LD-----~~~~~~i~~~l~~l~~--~~~~Tvi~itH~l~~~-----~--~aDrI~vl~  225 (251)
T d1jj7a_         170 PCVLILDDATSALD-----ANSQLQVEQLLYESPE--RYSRSVLLITQHLSLV-----E--QADHILFLE  225 (251)
T ss_dssp             CSEEEEESTTTTCC-----HHHHHHHHHHHHTCGG--GGGCEEEEECSCHHHH-----H--TCSEEEEEE
T ss_pred             CcEEEecCcCcccC-----hhhHHHHHHHHHHHhh--hcCCEEEEEeCCHHHH-----H--hCCEEEEEE
Confidence            99999999844332     3344555666665543  2356677777664432     2  455555553

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.59  E-value=0.0022  Score=46.92  Aligned_cols=15  Identities=27%  Similarity=0.246  Sum_probs=13.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||+|||++|..+|
T Consensus        32 ~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          32 SGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHH
Confidence            69 9999999998766

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.57  E-value=0.0016  Score=50.62  Aligned_cols=14  Identities=29%  Similarity=0.487  Sum_probs=13.8

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | .|+|||+++++++
T Consensus        36 G~sGaGKSTll~~i~   50 (240)
T d1g2912          36 GPSGCGKTTTLRMIA   50 (240)
T ss_dssp             CSTTSSHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHh
Confidence            9 9999999999999

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.56  E-value=0.00038  Score=49.87  Aligned_cols=15  Identities=40%  Similarity=0.554  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.+|
T Consensus         7 iG~~G~GKSTig~~La   22 (165)
T d2iyva1           7 VGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.53  E-value=0.0014  Score=50.58  Aligned_cols=43  Identities=16%  Similarity=0.313  Sum_probs=25.3

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYK  118 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~  118 (170)
                      |.||++||-=+-+     .......+++.+..+..  ..+.-+|++|...
T Consensus       164 P~lLllDEPTs~L-----D~~~~~~i~~~l~~l~~--~~g~tii~vTHd~  206 (230)
T d1l2ta_         164 PPIILADQPTGAL-----DSKTGEKIMQLLKKLNE--EDGKTVVVVTHDI  206 (230)
T ss_dssp             CSEEEEESTTTTS-----CHHHHHHHHHHHHHHHH--TTCCEEEEECSCH
T ss_pred             CCEEEecCCcccc-----CHHHHHHHHHHHHHHHH--hhCCEEEEECCCH
Confidence            9999999973222     22334445555555543  3467777777543

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.46  E-value=0.00049  Score=48.35  Aligned_cols=14  Identities=29%  Similarity=0.482  Sum_probs=13.8

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||+|||||+++++
T Consensus         9 G~~GSGKTTL~~~L~   23 (170)
T d1np6a_           9 AWSGTGKTTLLKKLI   23 (170)
T ss_dssp             CCTTSCHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHH
Confidence            9 9999999999998

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.44  E-value=0.003  Score=48.03  Aligned_cols=49  Identities=8%  Similarity=0.175  Sum_probs=29.2

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDY  117 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~  117 (170)
                      +.+|++|-+-.+............+++..+..+....+--++++.=+|.
T Consensus       133 ~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~K  181 (274)
T d1nlfa_         133 RRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASK  181 (274)
T ss_dssp             CSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred             ccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhccc
Confidence            7899999998877644444555667777777665432223344444453

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.38  E-value=0.00058  Score=48.95  Aligned_cols=19  Identities=58%  Similarity=0.719  Sum_probs=16.1

Q ss_pred             cc-CCCcHHHHHHHHH-cccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDL   61 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l   61 (170)
                      .| ||+|||++++++| .+++
T Consensus         6 iG~~GsGKsTi~k~La~~l~~   26 (161)
T d1viaa_           6 IGFMGSGKSTLARALAKDLDL   26 (161)
T ss_dssp             ECCTTSCHHHHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHHHHhCC
Confidence            39 9999999999999 4444

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.37  E-value=0.00059  Score=49.04  Aligned_cols=20  Identities=20%  Similarity=0.230  Sum_probs=16.8

Q ss_pred             cc-CCCcHHHHHHHHH-ccccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDLK   62 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l~   62 (170)
                      .| ||+|||++|+.+| .+++.
T Consensus         8 ~G~~GsGKSTia~~LA~~Lg~~   29 (170)
T d1e6ca_           8 VGARGCGMTTVGRELARALGYE   29 (170)
T ss_dssp             ESCTTSSHHHHHHHHHHHHTCE
T ss_pred             ECCCCCCHHHHHHHHHHHhCCC
Confidence            59 9999999999999 45554

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.30  E-value=0.0025  Score=49.39  Aligned_cols=15  Identities=27%  Similarity=0.439  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+|||++.+.++
T Consensus        38 iGpsGaGKSTLl~~i~   53 (239)
T d1v43a3          38 LGPSGCGKTTTLRMIA   53 (239)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCChHHHHHHHHH
Confidence            39 9999999999999

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.30  E-value=0.0014  Score=50.48  Aligned_cols=14  Identities=29%  Similarity=0.501  Sum_probs=13.9

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | .|+|||++.++++
T Consensus        33 GpsGaGKSTll~~l~   47 (229)
T d3d31a2          33 GPTGAGKTLFLELIA   47 (229)
T ss_dssp             CCCTHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHh
Confidence            9 9999999999999

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.27  E-value=0.0039  Score=48.87  Aligned_cols=51  Identities=12%  Similarity=0.254  Sum_probs=29.5

Q ss_pred             ceeEeeechhhhccCC-----------ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCC
Q 036857           69 RSILVIEDAVTSFESN-----------AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHI  121 (170)
Q Consensus        69 p~il~iDEiD~~~~~~-----------~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~l  121 (170)
                      +.+|++|=+-++.+..           +...+.++.++..+-....  ..++.+|+|..-...+
T Consensus       136 ~~liIiDSi~al~~r~e~~~~~~~~~~~~~a~~l~~~lr~l~~~~~--~~~~~vi~tNQv~~~~  197 (268)
T d1xp8a1         136 IDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILS--KTGTAAIFINQVREKI  197 (268)
T ss_dssp             CSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHT--TTCCEEEEEEEC----
T ss_pred             CcEEEEecccccccHHHHcccccchhHHHHHHHHHHHHHHHHhhhh--hcCCeEEEEeEEeecc
Confidence            8899999888877411           1234456666666666654  3566767664333343

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.25  E-value=0.00076  Score=47.69  Aligned_cols=15  Identities=20%  Similarity=0.218  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| ||+||||+++.++
T Consensus         7 ~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           7 TGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999998

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.25  E-value=0.00066  Score=50.25  Aligned_cols=20  Identities=30%  Similarity=0.474  Sum_probs=16.4

Q ss_pred             cc-CCCcHHHHHHHHH-ccccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDLK   62 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l~   62 (170)
                      -| ||+||||.|+.|| .+++.
T Consensus         9 dGp~GsGKgT~ak~La~~lg~~   30 (223)
T d1q3ta_           9 DGPASSGKSTVAKIIAKDFGFT   30 (223)
T ss_dssp             ECSSCSSHHHHHHHHHHHHCCE
T ss_pred             ECCCCCCHHHHHHHHHHHhCCc
Confidence            39 9999999999999 44443

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.23  E-value=0.0029  Score=48.91  Aligned_cols=14  Identities=29%  Similarity=0.522  Sum_probs=13.8

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | .|+||||+++.++
T Consensus        35 G~sGsGKSTLl~ll~   49 (242)
T d1mv5a_          35 GPSGGGKSTIFSLLE   49 (242)
T ss_dssp             CCTTSSHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHH
Confidence            9 9999999999999

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.22  E-value=0.00079  Score=48.23  Aligned_cols=22  Identities=18%  Similarity=0.376  Sum_probs=17.3

Q ss_pred             cc-CCCcHHHHHHHHH-ccccccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDLKEF   64 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l~~v   64 (170)
                      .| ||+||||+|+.|| ..++..+
T Consensus         6 ~G~pGSGKsT~a~~La~~~~~~~i   29 (182)
T d1zina1           6 MGLPGAGKGTQAEKIVAAYGIPHI   29 (182)
T ss_dssp             ECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred             ECCCCCCHHHHHHHHHHHHCCcee
Confidence            49 9999999999999 4444333

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.21  E-value=0.00097  Score=51.92  Aligned_cols=15  Identities=27%  Similarity=0.527  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+|||++.+.++
T Consensus        37 iG~sGsGKSTll~~i~   52 (242)
T d1oxxk2          37 LGPSGAGKTTFMRIIA   52 (242)
T ss_dssp             ECSCHHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHH
Confidence            39 9999999999999

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.14  E-value=0.0025  Score=49.44  Aligned_cols=14  Identities=43%  Similarity=0.627  Sum_probs=13.9

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | .|+|||++++.|+
T Consensus        38 G~sGsGKSTLl~~i~   52 (240)
T d3dhwc1          38 GASGAGKSTLIRCVN   52 (240)
T ss_dssp             ESTTSSHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHc
Confidence            9 9999999999999

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.10  E-value=0.00091  Score=48.76  Aligned_cols=15  Identities=40%  Similarity=0.556  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++|+.++
T Consensus        20 ~G~pGsGKST~a~~l~   35 (172)
T d1yj5a2          20 VGFPGAGKSTFIQEHL   35 (172)
T ss_dssp             ECCTTSSHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999997

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.09  E-value=0.001  Score=48.04  Aligned_cols=21  Identities=29%  Similarity=0.521  Sum_probs=16.8

Q ss_pred             cc-CCCcHHHHHHHHH-cccccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDLKE   63 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l~~   63 (170)
                      .| ||+||||+|+.|| ..++..
T Consensus         6 ~G~pGsGKsT~a~~La~~~g~~~   28 (181)
T d2cdna1           6 LGPPGAGKGTQAVKLAEKLGIPQ   28 (181)
T ss_dssp             ECCTTSSHHHHHHHHHHHHTCCE
T ss_pred             ECCCCCCHHHHHHHHHHHHCCce
Confidence            49 9999999999999 444433

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.08  E-value=0.00095  Score=48.58  Aligned_cols=20  Identities=25%  Similarity=0.419  Sum_probs=16.3

Q ss_pred             cc-CCCcHHHHHHHHH-ccccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDLK   62 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l~   62 (170)
                      .| ||+||||+|+.|| ..++.
T Consensus         9 ~GppGsGKsT~a~~La~~~~~~   30 (189)
T d1zaka1           9 SGAPASGKGTQCELIKTKYQLA   30 (189)
T ss_dssp             EESTTSSHHHHHHHHHHHHCCE
T ss_pred             ECCCCCCHHHHHHHHHHHHCCc
Confidence            49 9999999999999 34333

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=95.98  E-value=0.001  Score=48.73  Aligned_cols=22  Identities=36%  Similarity=0.386  Sum_probs=17.2

Q ss_pred             cc-CCCcHHHHHHHHH-ccccccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDLKEF   64 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l~~v   64 (170)
                      .| ||+||||.|+.|| ..++..+
T Consensus         9 ~GppGSGKgT~ak~La~~~gl~~i   32 (225)
T d1ckea_           9 DGPSGAGKGTLCKAMAEALQWHLL   32 (225)
T ss_dssp             ECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred             ECCCCCCHHHHHHHHHHHhCCcEE
Confidence            49 9999999999999 4444333

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=95.97  E-value=0.0047  Score=48.22  Aligned_cols=15  Identities=27%  Similarity=0.565  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      || ||+|||+++-.+|
T Consensus        60 ~G~~gsGKTtl~l~~~   75 (263)
T d1u94a1          60 YGPESSGKTTLTLQVI   75 (263)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ecCCCcHHHHHHHHHH
Confidence            79 9999999999888

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.94  E-value=0.0037  Score=48.42  Aligned_cols=15  Identities=33%  Similarity=0.492  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+|||++.+.|+
T Consensus        30 iGpnGaGKSTll~~i~   45 (240)
T d2onka1          30 LGPTGAGKSVFLELIA   45 (240)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCChHHHHHHHHH
Confidence            49 9999999999999

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.89  E-value=0.0053  Score=48.17  Aligned_cols=45  Identities=16%  Similarity=0.256  Sum_probs=28.6

Q ss_pred             ceeEeeechhhhcc----C-------CccchHHHHHHHHHhhchhccCCCCeEEEEeC
Q 036857           69 RSILVIEDAVTSFE----S-------NAYNSVALSALLKFVDGLWSSSGDGRILVMTT  115 (170)
Q Consensus        69 p~il~iDEiD~~~~----~-------~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tT  115 (170)
                      +.+|++|=+-.+.+    +       .+...+.++.++..+-.+..  ..++.+|+|.
T Consensus       139 ~~liIiDSi~al~~~~E~e~~~~~~~~~~~a~~l~~~l~~l~~~~~--~~~~~vi~~N  194 (269)
T d1mo6a1         139 LDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALN--NSGTTAIFIN  194 (269)
T ss_dssp             EEEEEEECSTTCCCHHHHC-------CCHHHHHHHHHHHHHHHHHH--HHTCEEEEEE
T ss_pred             CCEEEEecccccccHHHhccccccchHHHHHHHHHHHHHHHHHHHh--hcCchhhhhh
Confidence            88999998888885    1       11223556667776666654  2466777763

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=95.87  E-value=0.0015  Score=48.03  Aligned_cols=22  Identities=27%  Similarity=0.617  Sum_probs=17.7

Q ss_pred             cc-CCCcHHHHHHHHH-ccccccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDLKEF   64 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l~~v   64 (170)
                      .| ||+|||++|+.|| ..++..+
T Consensus        12 iG~PGSGKtT~a~~La~~~g~~~i   35 (189)
T d2ak3a1          12 MGAPGSGKGTVSSRITKHFELKHL   35 (189)
T ss_dssp             ECCTTSSHHHHHHHHHHHBCCEEE
T ss_pred             ECCCCCCHHHHHHHHHHHHCCeEE
Confidence            59 9999999999999 4454443

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=95.80  E-value=0.0016  Score=46.99  Aligned_cols=22  Identities=18%  Similarity=0.318  Sum_probs=17.3

Q ss_pred             cc-CCCcHHHHHHHHH-ccccccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDLKEF   64 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l~~v   64 (170)
                      .| ||+||||+|+.|| .+++..+
T Consensus         6 ~G~pGSGKsT~a~~La~~~g~~~i   29 (182)
T d1s3ga1           6 MGLPGAGKGTQADRIVEKYGTPHI   29 (182)
T ss_dssp             ECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred             ECCCCCCHHHHHHHHHHHHCCcee
Confidence            49 9999999999999 4444333

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.78  E-value=0.0017  Score=46.97  Aligned_cols=19  Identities=21%  Similarity=0.384  Sum_probs=16.0

Q ss_pred             cc-CCCcHHHHHHHHH-cccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDL   61 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l   61 (170)
                      .| ||+|||++|+.|| ..++
T Consensus         8 ~G~pGSGKtT~a~~La~~~g~   28 (180)
T d1akya1           8 IGPPGAGKGTQAPNLQERFHA   28 (180)
T ss_dssp             ECCTTSSHHHHHHHHHHHHCC
T ss_pred             ECCCCCCHHHHHHHHHHHhCC
Confidence            49 9999999999999 3333

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=95.77  E-value=0.0055  Score=47.90  Aligned_cols=36  Identities=22%  Similarity=0.405  Sum_probs=24.1

Q ss_pred             cc-CCCcHHHHHHHHH-ccccccccc--c---------CceeEeeechh
Q 036857           43 WG-PYTGKSSLIAAMA-DLDLKEFQS--N---------SRSILVIEDAV   78 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l~~v~~--~---------~p~il~iDEiD   78 (170)
                      || |+||||+++.+|+ -++-.....  +         ...++++||.+
T Consensus       110 ~G~~~tGKS~f~~~i~~~lg~~~~~~~~~~~f~l~~l~~k~~~~~~e~~  158 (267)
T d1u0ja_         110 FGPATTGKTNIAEAIAHTVPFYGCVNWTNENFPFNDCVDKMVIWWEEGK  158 (267)
T ss_dssp             ECSTTSSHHHHHHHHHHHSSCEEECCTTCSSCTTGGGSSCSEEEECSCC
T ss_pred             EcCCCCCHHHHHHHHHHHhcchhhccccCCCccccccCCCEEEEEeCCC
Confidence            69 9999999999999 111111111  1         16788899985

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.77  E-value=0.0016  Score=47.39  Aligned_cols=20  Identities=30%  Similarity=0.486  Sum_probs=16.4

Q ss_pred             cc-CCCcHHHHHHHHH-ccccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDLK   62 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l~   62 (170)
                      .| ||+||||+|+.|| ..++.
T Consensus        12 ~G~pGSGKsT~a~~La~~~g~~   33 (194)
T d1qf9a_          12 LGGPGSGKGTQCANIVRDFGWV   33 (194)
T ss_dssp             EESTTSSHHHHHHHHHHHHCCE
T ss_pred             ECCCCCCHHHHHHHHHHHHCCc
Confidence            59 9999999999999 44443

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=95.76  E-value=0.0016  Score=46.14  Aligned_cols=14  Identities=43%  Similarity=0.750  Sum_probs=13.8

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||+||||+++.+|
T Consensus         8 G~~GsGKTT~~~~La   22 (194)
T d1nksa_           8 GIPGVGKSTVLAKVK   22 (194)
T ss_dssp             ECTTSCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHH
Confidence            9 9999999999999

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.75  E-value=0.0017  Score=47.32  Aligned_cols=21  Identities=24%  Similarity=0.438  Sum_probs=17.0

Q ss_pred             cc-CCCcHHHHHHHHH-cccccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDLKE   63 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l~~   63 (170)
                      .| ||+|||++|+.|| ..++..
T Consensus        14 ~GppGSGKsT~a~~La~~~g~~~   36 (196)
T d1ukza_          14 LGGPGAGKGTQCEKLVKDYSFVH   36 (196)
T ss_dssp             ECSTTSSHHHHHHHHHHHSSCEE
T ss_pred             ECCCCCCHHHHHHHHHHHhCCeE
Confidence            49 9999999999999 444433

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=95.72  E-value=0.0018  Score=46.95  Aligned_cols=21  Identities=24%  Similarity=0.396  Sum_probs=16.8

Q ss_pred             cc-CCCcHHHHHHHHH-cccccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDLKE   63 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l~~   63 (170)
                      .| ||+||||.|+.|| ..++..
T Consensus         9 ~G~pGSGKsT~a~~La~~~g~~~   31 (190)
T d1ak2a1           9 LGPPGAGKGTQAPKLAKNFCVCH   31 (190)
T ss_dssp             ECCTTSSHHHHHHHHHHHHTCEE
T ss_pred             ECCCCCCHHHHHHHHHHHhCCeE
Confidence            49 9999999999999 444433

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.71  E-value=0.0017  Score=46.46  Aligned_cols=15  Identities=27%  Similarity=0.466  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| ||+|||++|+.|+
T Consensus        28 ~G~~GSGKSTla~~L~   43 (198)
T d1rz3a_          28 DGLSRSGKTTLANQLS   43 (198)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            38 9999999999998

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.0086  Score=42.57  Aligned_cols=15  Identities=33%  Similarity=0.459  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+++..+.
T Consensus         9 vG~~~vGKTsli~r~~   24 (173)
T d2a5ja1           9 IGDTGVGKSCLLLQFT   24 (173)
T ss_dssp             ESSTTSSHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHh
Confidence            49 9999999999998

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.68  E-value=0.013  Score=45.19  Aligned_cols=45  Identities=11%  Similarity=0.228  Sum_probs=26.0

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCC
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHI  121 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~l  121 (170)
                      |.+|++||==+-     -......++.+.+..+..   .+.-|+++|...+.+
T Consensus       169 P~llilDEPt~g-----LD~~~~~~i~~~i~~l~~---~g~til~vsHdl~~~  213 (254)
T d1g6ha_         169 PKMIVMDEPIAG-----VAPGLAHDIFNHVLELKA---KGITFLIIEHRLDIV  213 (254)
T ss_dssp             CSEEEEESTTTT-----CCHHHHHHHHHHHHHHHH---TTCEEEEECSCCSTT
T ss_pred             cCchhhcCCccc-----CCHHHHHHHHHHHHHHHH---CCCEEEEEeCcHHHH
Confidence            999999996322     222334455555555544   366666666555443

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.66  E-value=0.0019  Score=47.11  Aligned_cols=22  Identities=18%  Similarity=0.356  Sum_probs=17.5

Q ss_pred             cc-CCCcHHHHHHHHH-ccccccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDLKEF   64 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l~~v   64 (170)
                      .| ||+|||+.|+.|| ..++..+
T Consensus        14 ~G~pGSGKsT~a~~La~~~g~~~i   37 (194)
T d3adka_          14 VGGPGSGKGTQCEKIVQKYGYTHL   37 (194)
T ss_dssp             EECTTSSHHHHHHHHHHHTCCEEE
T ss_pred             ECCCCCCHHHHHHHHHHHhCCeeE
Confidence            59 9999999999999 4444433

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.56  E-value=0.0021  Score=46.15  Aligned_cols=15  Identities=27%  Similarity=0.481  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+||||.|+.||
T Consensus         6 ~G~pGSGKsT~~~~La   21 (179)
T d1e4va1           6 LGAPVAGKGTQAQFIM   21 (179)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.0024  Score=46.27  Aligned_cols=21  Identities=24%  Similarity=0.392  Sum_probs=16.9

Q ss_pred             cc-CCCcHHHHHHHHH-cccccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDLKE   63 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l~~   63 (170)
                      .| ||+||||.|+.|| .+++..
T Consensus         7 ~GppGSGKsT~a~~La~~~g~~~   29 (194)
T d1teva_           7 LGGPGAGKGTQCARIVEKYGYTH   29 (194)
T ss_dssp             ECCTTSSHHHHHHHHHHHHCCEE
T ss_pred             ECCCCCCHHHHHHHHHHHhCCce
Confidence            49 9999999999999 444443

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=95.46  E-value=0.013  Score=45.07  Aligned_cols=14  Identities=36%  Similarity=0.596  Sum_probs=13.8

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | .|+|||++.++++
T Consensus        39 GpnGaGKSTl~~~i~   53 (240)
T d1ji0a_          39 GANGAGKTTTLSAIA   53 (240)
T ss_dssp             CSTTSSHHHHHHHHT
T ss_pred             CCCCCcHHHHHHHHh
Confidence            9 9999999999999

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.45  E-value=0.0096  Score=44.37  Aligned_cols=15  Identities=27%  Similarity=0.527  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| -|+|||++.+.++
T Consensus        33 ~G~NGsGKSTLl~~i~   48 (200)
T d1sgwa_          33 HGPNGIGKTTLLKTIS   48 (200)
T ss_dssp             ECCTTSSHHHHHHHHT
T ss_pred             ECCCCChHHHHHHHHh
Confidence            49 9999999999999

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.40  E-value=0.0027  Score=47.65  Aligned_cols=28  Identities=25%  Similarity=0.464  Sum_probs=19.9

Q ss_pred             CChhhHHHhhcC----cc--c-CCCcHHHHHHHHH
Q 036857           30 TDFDMNKALVDD----YW--G-PYTGKSSLIAAMA   57 (170)
Q Consensus        30 ~~~~~k~~l~~~----~~--G-PGtGKT~la~aiA   57 (170)
                      +....+++....    +|  | ||+|||++|++++
T Consensus        11 ~~~~~r~~~~~~kg~vIwltGlsGsGKTTia~~L~   45 (208)
T d1m7ga_          11 LTRSERTELRNQRGLTIWLTGLSASGKSTLAVELE   45 (208)
T ss_dssp             CCHHHHHHHHTSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred             cCHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHH
Confidence            344455555443    24  9 9999999999998

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.34  E-value=0.044  Score=40.19  Aligned_cols=14  Identities=14%  Similarity=0.387  Sum_probs=11.4

Q ss_pred             ceeEeeechhhhcc
Q 036857           69 RSILVIEDAVTSFE   82 (170)
Q Consensus        69 p~il~iDEiD~~~~   82 (170)
                      -..+++||+|.++.
T Consensus       144 l~~lV~DEaD~l~~  157 (206)
T d1s2ma1         144 CSLFIMDEADKMLS  157 (206)
T ss_dssp             CCEEEEESHHHHSS
T ss_pred             ceEEEeechhhhhh
Confidence            44688999999976

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.006  Score=44.81  Aligned_cols=34  Identities=29%  Similarity=0.305  Sum_probs=21.6

Q ss_pred             c-CCCcHHHHHHHHH-ccccccccccC--ceeEeeech
Q 036857           44 G-PYTGKSSLIAAMA-DLDLKEFQSNS--RSILVIEDA   77 (170)
Q Consensus        44 G-PGtGKT~la~aiA-~~~l~~v~~~~--p~il~iDEi   77 (170)
                      | +|+||||+|+.++ .++...+....  ..+|=.|+.
T Consensus         9 G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~y   46 (213)
T d1uj2a_           9 GGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF   46 (213)
T ss_dssp             CSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGG
T ss_pred             CCCCCCHHHHHHHHHHHhchhccccCCCceEEEecccc
Confidence            8 9999999999998 44433333333  334444443

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=95.25  E-value=0.0096  Score=39.82  Aligned_cols=12  Identities=8%  Similarity=0.324  Sum_probs=10.2

Q ss_pred             ceeEeeechhhh
Q 036857           69 RSILVIEDAVTS   80 (170)
Q Consensus        69 p~il~iDEiD~~   80 (170)
                      -.++++||++.+
T Consensus        99 ~~lvIiDEaH~~  110 (140)
T d1yksa1          99 WEVIIMDEAHFL  110 (140)
T ss_dssp             CSEEEETTTTCC
T ss_pred             eeEEEEcccccc
Confidence            678999999865

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.22  E-value=0.012  Score=44.71  Aligned_cols=50  Identities=8%  Similarity=0.193  Sum_probs=23.7

Q ss_pred             ceeEeeechhhhccCC--ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCC
Q 036857           69 RSILVIEDAVTSFESN--AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYK  118 (170)
Q Consensus        69 p~il~iDEiD~~~~~~--~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~  118 (170)
                      |.+|+||=+..+....  ......+..+...+-.+....+-.++++.-+|+.
T Consensus       148 ~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~r~  199 (277)
T d1cr2a_         148 CDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNP  199 (277)
T ss_dssp             CSEEEEEEEEC----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC--
T ss_pred             cceEEEcccccccccccccchhHHHHHHHHHHHHHhhhccccceeecccccc
Confidence            8899999887665422  1222445556666666554322234444445543

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.19  E-value=0.0049  Score=48.56  Aligned_cols=15  Identities=33%  Similarity=0.454  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+|||+++++|+
T Consensus        68 vG~nGsGKSTLl~~i~   83 (281)
T d1r0wa_          68 TGSTGSGKTSLLMLIL   83 (281)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCChHHHHHHHHh
Confidence            39 9999999999999

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=95.18  E-value=0.021  Score=43.75  Aligned_cols=14  Identities=21%  Similarity=0.449  Sum_probs=13.8

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | .|+|||++.++++
T Consensus        35 G~nGaGKSTLl~~l~   49 (238)
T d1vpla_          35 GPNGAGKTTTLRIIS   49 (238)
T ss_dssp             CCTTSSHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHh
Confidence            9 9999999999999

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=95.16  E-value=0.03  Score=38.92  Aligned_cols=15  Identities=20%  Similarity=0.519  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|.+.+.
T Consensus         8 vG~~~~GKTsLi~~l~   23 (165)
T d1ksha_           8 LGLDNAGKTTILKKFN   23 (165)
T ss_dssp             ECSTTSSHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHc
Confidence            49 9999999999999

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.07  E-value=0.0041  Score=44.10  Aligned_cols=14  Identities=29%  Similarity=0.555  Sum_probs=13.5

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||+|||||+..++
T Consensus         8 G~~gSGKTTli~~l~   22 (165)
T d1xjca_           8 GYKHSGKTTLMEKWV   22 (165)
T ss_dssp             CCTTSSHHHHHHHHH
T ss_pred             eCCCCCHHHHHHHHH
Confidence            9 9999999999998

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=95.02  E-value=0.0059  Score=46.69  Aligned_cols=24  Identities=17%  Similarity=0.084  Sum_probs=15.7

Q ss_pred             CChhhHHHhhcCc-----cc-CCCcHHHHH
Q 036857           30 TDFDMNKALVDDY-----WG-PYTGKSSLI   53 (170)
Q Consensus        30 ~~~~~k~~l~~~~-----~G-PGtGKT~la   53 (170)
                      ++|++++.+...-     .| ||||||+++
T Consensus         2 L~~eQ~~av~~~~~~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1           2 LNPGQQQAVEFVTGPCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             CCHHHHHHHHCCSSEEEECCCTTSCHHHHH
T ss_pred             cCHHHHHHHhCCCCCEEEEeeCCccHHHHH
Confidence            4566666554321     59 999999753

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=94.94  E-value=0.029  Score=42.04  Aligned_cols=15  Identities=33%  Similarity=0.428  Sum_probs=13.6

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||+.+.-+|
T Consensus        16 vGp~GvGKTTTiaKLA   31 (207)
T d1ls1a2          16 VGLQGSGKTTTAAKLA   31 (207)
T ss_dssp             ECCTTTTHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999988888

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.76  E-value=0.025  Score=39.65  Aligned_cols=15  Identities=33%  Similarity=0.412  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++++.
T Consensus        10 vG~~~vGKTsli~~~~   25 (166)
T d1z0fa1          10 IGDMGVGKSCLLHQFT   25 (166)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            49 9999999999998

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=94.74  E-value=0.0067  Score=49.26  Aligned_cols=27  Identities=26%  Similarity=0.160  Sum_probs=18.1

Q ss_pred             CChhhHHHhhcCc-------cc-CCCcHHHHHHHH
Q 036857           30 TDFDMNKALVDDY-------WG-PYTGKSSLIAAM   56 (170)
Q Consensus        30 ~~~~~k~~l~~~~-------~G-PGtGKT~la~ai   56 (170)
                      ..+.+++.+...+       +| ||||||+++..+
T Consensus       149 ~~~~Q~~A~~~al~~~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         149 EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             SCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHH
T ss_pred             cccHHHHHHHHHHcCCeEEEEcCCCCCceehHHHH
Confidence            4455666555333       69 999999987543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.71  E-value=0.0048  Score=45.22  Aligned_cols=15  Identities=47%  Similarity=0.605  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||||||+++..+|
T Consensus        40 ~G~pGsGKT~l~lq~~   55 (251)
T d1szpa2          40 FGEFRTGKSQLCHTLA   55 (251)
T ss_dssp             EESTTSSHHHHHHHHT
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            69 9999999999887

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.70  E-value=0.0065  Score=46.01  Aligned_cols=36  Identities=25%  Similarity=0.302  Sum_probs=24.6

Q ss_pred             cc-CCCcHHHHHHHHH----ccccccccccC---------ceeEeeechh
Q 036857           43 WG-PYTGKSSLIAAMA----DLDLKEFQSNS---------RSILVIEDAV   78 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA----~~~l~~v~~~~---------p~il~iDEiD   78 (170)
                      || |+||||++|.+|+    +.-++....++         ..++++||+-
T Consensus        59 ~GP~~TGKS~f~~sl~~~l~G~vis~~N~~s~F~Lq~l~~~kv~l~dD~t  108 (205)
T d1tuea_          59 CGPANTGKSYFGMSFIHFIQGAVISFVNSTSHFWLEPLTDTKVAMLDDAT  108 (205)
T ss_dssp             ESCGGGCHHHHHHHHHHHHTCEECCCCCSSSCGGGGGGTTCSSEEEEEEC
T ss_pred             ECCCCccHHHHHHHHHHHhCCEEEeccCCCCCcccccccCCeEEEEeccc
Confidence            79 9999999999998    11112222221         5688999983

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.53  E-value=0.0067  Score=42.88  Aligned_cols=15  Identities=33%  Similarity=0.563  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||+|||++|..+|
T Consensus        29 ~G~~GsGKT~l~l~la   44 (242)
T d1n0wa_          29 FGEFRTGKTQICHTLA   44 (242)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHH
Confidence            59 9999999999998

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.44  E-value=0.0071  Score=44.66  Aligned_cols=15  Identities=33%  Similarity=0.532  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||||||++|..+|
T Consensus        43 ~G~~GsGKT~lalq~~   58 (258)
T d1v5wa_          43 FGEFRTGKTQLSHTLC   58 (258)
T ss_dssp             ECCTTCTHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            69 9999999999997

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.40  E-value=0.023  Score=40.06  Aligned_cols=15  Identities=40%  Similarity=0.496  Sum_probs=13.9

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| ||+|||++++.+.
T Consensus        11 vG~~~vGKTsll~~~~   26 (174)
T d2bmea1          11 IGNAGTGKSCLLHQFI   26 (174)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            39 9999999999988

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.30  E-value=0.0074  Score=44.71  Aligned_cols=15  Identities=33%  Similarity=0.525  Sum_probs=13.9

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||||||+++-.+|
T Consensus        42 ~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          42 FGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            69 9999999999887

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.21  E-value=0.028  Score=40.26  Aligned_cols=15  Identities=33%  Similarity=0.468  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| +|+|||+|.+.+.
T Consensus        15 vG~~~vGKTsLi~r~~   30 (185)
T d2atxa1          15 VGDGAVGKTCLLMSYA   30 (185)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999988

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.18  E-value=0.035  Score=38.80  Aligned_cols=15  Identities=33%  Similarity=0.355  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+++..+.
T Consensus         9 iG~~~vGKTsli~~l~   24 (166)
T d1ctqa_           9 VGAGGVGKSALTIQLI   24 (166)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999998

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.09  E-value=0.02  Score=43.87  Aligned_cols=15  Identities=33%  Similarity=0.412  Sum_probs=14.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++..+|.
T Consensus        38 vG~tg~GKSSliN~il   53 (257)
T d1h65a_          38 MGKGGVGKSSTVNSII   53 (257)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHh
Confidence            69 9999999999998

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.07  E-value=0.012  Score=45.37  Aligned_cols=24  Identities=13%  Similarity=0.192  Sum_probs=16.9

Q ss_pred             CChhhHHHhhcCc-----cc-CCCcHHHHH
Q 036857           30 TDFDMNKALVDDY-----WG-PYTGKSSLI   53 (170)
Q Consensus        30 ~~~~~k~~l~~~~-----~G-PGtGKT~la   53 (170)
                      +++++++.+...-     -| ||||||+++
T Consensus        12 L~~eQ~~~v~~~~g~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          12 LNKEQQEAVRTTEGPLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             SCHHHHHHHHCCSSCEEEEECTTSCHHHHH
T ss_pred             CCHHHHHHHhCCCCCEEEEecCCccHHHHH
Confidence            6777877654322     49 999999754

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=94.02  E-value=0.01  Score=40.61  Aligned_cols=15  Identities=20%  Similarity=0.443  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| ||+|||+|.++++
T Consensus         6 vG~~~vGKSsLi~~l~   21 (160)
T d1r8sa_           6 VGLDAAGKTTILYKLK   21 (160)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            39 9999999999998

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=94.00  E-value=0.01  Score=40.79  Aligned_cols=15  Identities=20%  Similarity=0.446  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| ||+|||+|.+++.
T Consensus        11 vG~~~vGKSSLi~~~~   26 (169)
T d1upta_          11 LGLDGAGKTTILYRLQ   26 (169)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999998

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.99  E-value=0.05  Score=38.01  Aligned_cols=15  Identities=33%  Similarity=0.423  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| ||+|||++.+.+.
T Consensus        10 vG~~~vGKTsli~rl~   25 (167)
T d1z0ja1          10 LGDTGVGKSSIMWRFV   25 (167)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            49 9999999999998

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=93.93  E-value=0.094  Score=36.55  Aligned_cols=15  Identities=40%  Similarity=0.687  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|++++.
T Consensus         6 iG~~n~GKSsLi~~L~   21 (171)
T d1mkya1           6 VGRPNVGKSTLFNKLV   21 (171)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999998

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=93.89  E-value=0.064  Score=37.63  Aligned_cols=15  Identities=20%  Similarity=0.485  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++.+.+.
T Consensus        18 vG~~~vGKTSli~rl~   33 (173)
T d1e0sa_          18 LGLDAAGKTTILYKLK   33 (173)
T ss_dssp             EEETTSSHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            59 9999999999998

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.83  E-value=0.043  Score=38.70  Aligned_cols=15  Identities=33%  Similarity=0.525  Sum_probs=13.9

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| ||+|||+|++.+.
T Consensus        10 vG~~~vGKTsLi~~~~   25 (175)
T d2f9la1          10 IGDSGVGKSNLLSRFT   25 (175)
T ss_dssp             ESSTTSSHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            39 9999999999997

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.79  E-value=0.038  Score=38.41  Aligned_cols=15  Identities=40%  Similarity=0.583  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.+.
T Consensus         6 vG~~~vGKTsLi~r~~   21 (164)
T d1yzqa1           6 LGEQSVGKTSLITRFM   21 (164)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            39 9999999999998

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=93.74  E-value=0.082  Score=39.49  Aligned_cols=15  Identities=33%  Similarity=0.443  Sum_probs=13.5

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||+.+--+|
T Consensus        12 vGptGvGKTTTiaKLA   27 (207)
T d1okkd2          12 VGVNGVGKTTTIAKLG   27 (207)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999888888

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=93.67  E-value=0.076  Score=43.22  Aligned_cols=35  Identities=14%  Similarity=0.056  Sum_probs=29.5

Q ss_pred             CCcccccCChhhHHHhhcCc---------cc-CCCcHHHHHHHHH
Q 036857           23 ATSNTIATDFDMNKALVDDY---------WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        23 ~~~~~v~~~~~~k~~l~~~~---------~G-PGtGKT~la~aiA   57 (170)
                      .+++++.+++.+.+.+...+         -| .|+|||++..++.
T Consensus       135 ~~l~~LG~~~~~~~~l~~l~~~~~GliLvtGpTGSGKSTTl~~~l  179 (401)
T d1p9ra_         135 LDLHSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGL  179 (401)
T ss_dssp             CCGGGSCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHH
T ss_pred             hhhhhhcccHHHHHHHHHHHhhhhceEEEEcCCCCCccHHHHHHh
Confidence            46999999999888776554         29 9999999999988

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.56  E-value=0.056  Score=37.82  Aligned_cols=15  Identities=40%  Similarity=0.563  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|++.+.
T Consensus        12 vG~~~vGKTsLi~~l~   27 (170)
T d1r2qa_          12 LGESAVGKSSLVLRFV   27 (170)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            39 9999999999999

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.23  E-value=0.015  Score=42.30  Aligned_cols=15  Identities=20%  Similarity=0.259  Sum_probs=14.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||+|||+++..+|
T Consensus        40 ~G~~G~GKT~~~l~~a   55 (258)
T d2i1qa2          40 AGVFGSGKTQIMHQSC   55 (258)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHH
Confidence            59 9999999999998

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=93.17  E-value=0.087  Score=35.49  Aligned_cols=15  Identities=27%  Similarity=0.260  Sum_probs=11.5

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .+ .|+|||.++-.++
T Consensus        14 ~apTGsGKT~~~~~~~   29 (136)
T d1a1va1          14 HAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             ECCTTSCTTTHHHHHH
T ss_pred             EeCCCCCHHHHHHHHH
Confidence            47 8999998875444

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.16  E-value=0.1  Score=37.18  Aligned_cols=15  Identities=33%  Similarity=0.578  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|..++.
T Consensus         9 vG~~n~GKTSLln~l~   24 (209)
T d1nrjb_           9 AGPQNSGKTSLLTLLT   24 (209)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999998

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=93.16  E-value=0.12  Score=36.07  Aligned_cols=15  Identities=33%  Similarity=0.322  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.+.
T Consensus        10 vG~~~vGKTsli~~~~   25 (168)
T d1u8za_          10 VGSGGVGKSALTLQFM   25 (168)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            49 9999999999988

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.96  E-value=0.19  Score=35.90  Aligned_cols=15  Identities=33%  Similarity=0.468  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|+..+.
T Consensus        12 vG~~~vGKTsli~~l~   27 (194)
T d2bcgy1          12 IGNSGVGKSCLLLRFS   27 (194)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHh
Confidence            49 9999999999988

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.93  E-value=0.04  Score=38.95  Aligned_cols=15  Identities=40%  Similarity=0.700  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++++.
T Consensus        11 vG~~~~GKSSLin~l~   26 (178)
T d1wf3a1          11 VGKPNVGKSTLLNNLL   26 (178)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999998

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.85  E-value=0.067  Score=37.59  Aligned_cols=15  Identities=20%  Similarity=0.379  Sum_probs=4.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|.+++.
T Consensus        12 vG~~~vGKTsLi~~l~   27 (173)
T d2fu5c1          12 IGDSGVGKTCVLFRFS   27 (173)
T ss_dssp             ECCCCC----------
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            49 9999999999888

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=92.79  E-value=0.019  Score=40.12  Aligned_cols=15  Identities=20%  Similarity=0.472  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|+.++.
T Consensus        21 vG~~~~GKSsLi~rl~   36 (177)
T d1zj6a1          21 VGLDNAGKTTILYQFS   36 (177)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999999

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.65  E-value=0.21  Score=37.18  Aligned_cols=19  Identities=16%  Similarity=0.202  Sum_probs=15.2

Q ss_pred             CCCcccccCChhhHHHhhc
Q 036857           22 PATSNTIATDFDMNKALVD   40 (170)
Q Consensus        22 p~~~~~v~~~~~~k~~l~~   40 (170)
                      -.+|+++.+++.+.+.|.+
T Consensus        16 ~~sF~~l~L~~~l~~~L~~   34 (222)
T d2j0sa1          16 TPTFDTMGLREDLLRGIYA   34 (222)
T ss_dssp             CCSGGGGCCCHHHHHHHHH
T ss_pred             CCCHHHCCCCHHHHHHHHH
Confidence            3479999999998887754

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=92.58  E-value=0.16  Score=38.03  Aligned_cols=15  Identities=33%  Similarity=0.368  Sum_probs=13.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||+.+--+|
T Consensus        17 vGptGvGKTTTiAKLA   32 (213)
T d1vmaa2          17 VGVNGTGKTTSCGKLA   32 (213)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999888888

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=92.55  E-value=0.021  Score=39.79  Aligned_cols=15  Identities=27%  Similarity=0.554  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|..++.
T Consensus        19 vG~~~vGKTsLl~~l~   34 (186)
T d1f6ba_          19 LGLDNAGKTTLLHMLK   34 (186)
T ss_dssp             EEETTSSHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            59 9999999999998

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.55  E-value=0.024  Score=38.39  Aligned_cols=15  Identities=27%  Similarity=0.554  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|..++.
T Consensus         6 iG~~nvGKSSLln~l~   21 (166)
T d2qtvb1           6 LGLDNAGKTTLLHMLK   21 (166)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999999

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=92.38  E-value=0.024  Score=40.71  Aligned_cols=19  Identities=26%  Similarity=0.279  Sum_probs=15.7

Q ss_pred             cc-CCCcHHHHHHHHHcccc
Q 036857           43 WG-PYTGKSSLIAAMADLDL   61 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA~~~l   61 (170)
                      .| ||+|||++|+.+.+.++
T Consensus         9 tG~~gSGKstva~~l~~~g~   28 (191)
T d1uf9a_           9 TGNIGSGKSTVAALLRSWGY   28 (191)
T ss_dssp             EECTTSCHHHHHHHHHHTTC
T ss_pred             ECCCCCCHHHHHHHHHHCCC
Confidence            39 99999999999984443

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.35  E-value=0.026  Score=39.57  Aligned_cols=15  Identities=33%  Similarity=0.510  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| ||+|||+|++.+.
T Consensus         9 vG~~~vGKTsLi~r~~   24 (167)
T d1z08a1           9 LGEGCVGKTSLVLRYC   24 (167)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            39 9999999999998

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.21  E-value=0.14  Score=36.78  Aligned_cols=15  Identities=27%  Similarity=0.332  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|..++.
T Consensus         6 vG~~~~GKTsLl~~l~   21 (207)
T d2fh5b1           6 VGLCDSGKTLLFVRLL   21 (207)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999998

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.21  E-value=0.028  Score=39.57  Aligned_cols=15  Identities=33%  Similarity=0.465  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|++++.
T Consensus        11 vG~~~vGKTsLi~~l~   26 (169)
T d3raba_          11 IGNSSVGKTSFLFRYA   26 (169)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            49 9999999999998

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.12  E-value=0.027  Score=39.39  Aligned_cols=15  Identities=33%  Similarity=0.474  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++++.
T Consensus         8 vG~~~vGKTSli~~l~   23 (166)
T d1g16a_           8 IGDSGVGKSCLLVRFV   23 (166)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            49 9999999999998

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.08  E-value=0.029  Score=39.16  Aligned_cols=15  Identities=40%  Similarity=0.461  Sum_probs=13.9

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| ||+|||+|+..+.
T Consensus         8 iG~~~vGKSsLi~rl~   23 (164)
T d1z2aa1           8 VGNGAVGKSSMIQRYC   23 (164)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            49 9999999999988

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.02  E-value=0.03  Score=39.15  Aligned_cols=15  Identities=33%  Similarity=0.410  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|+..+.
T Consensus         9 vG~~~vGKTsLi~r~~   24 (167)
T d1kaoa_           9 LGSGGVGKSALTVQFV   24 (167)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            49 9999999999998

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.01  E-value=0.03  Score=39.87  Aligned_cols=15  Identities=20%  Similarity=0.390  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|++.+.
T Consensus        11 vG~~~vGKTsLi~~l~   26 (186)
T d2f7sa1          11 LGDSGVGKTTFLYRYT   26 (186)
T ss_dssp             ESCTTSSHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHh
Confidence            49 9999999999998

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.95  E-value=0.029  Score=39.49  Aligned_cols=15  Identities=33%  Similarity=0.328  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|.+.+.
T Consensus        11 vG~~~vGKTsLi~r~~   26 (171)
T d2erya1          11 VGGGGVGKSALTIQFI   26 (171)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999998

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.94  E-value=0.03  Score=40.34  Aligned_cols=14  Identities=29%  Similarity=0.577  Sum_probs=13.5

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | .|+||||+++.++
T Consensus         7 G~dGsGKST~~~~L~   21 (208)
T d1gsia_           7 GVDGAGKRTLVEKLS   21 (208)
T ss_dssp             CSTTSSHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHH
Confidence            9 9999999999998

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.90  E-value=0.029  Score=39.44  Aligned_cols=15  Identities=27%  Similarity=0.459  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|++.+.
T Consensus        11 vG~~~vGKTsLi~~l~   26 (171)
T d2ew1a1          11 IGNAGVGKTCLVRRFT   26 (171)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            49 9999999999998

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=91.89  E-value=0.031  Score=40.96  Aligned_cols=15  Identities=27%  Similarity=0.459  Sum_probs=13.9

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| ||+|||||.+++.
T Consensus         6 ~G~~GsGKTTLl~~ll   21 (244)
T d1yrba1           6 VGTAGSGKTTLTGEFG   21 (244)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             EcCCCCcHHHHHHHHH
Confidence            39 9999999999997

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.88  E-value=0.032  Score=39.09  Aligned_cols=15  Identities=40%  Similarity=0.574  Sum_probs=13.9

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|.+.+.
T Consensus         8 iG~~~vGKTsLi~r~~   23 (171)
T d2erxa1           8 FGAGGVGKSSLVLRFV   23 (171)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999988

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=91.88  E-value=0.027  Score=41.41  Aligned_cols=19  Identities=42%  Similarity=0.606  Sum_probs=16.2

Q ss_pred             c-CCCcHHHHHHHHHccccc
Q 036857           44 G-PYTGKSSLIAAMADLDLK   62 (170)
Q Consensus        44 G-PGtGKT~la~aiA~~~l~   62 (170)
                      | +|+|||++|+.+.+.++.
T Consensus        10 G~igSGKStv~~~l~~~G~~   29 (208)
T d1vhta_          10 GGIGSGKSTVANAFADLGIN   29 (208)
T ss_dssp             CCTTSCHHHHHHHHHHTTCE
T ss_pred             CCCcCCHHHHHHHHHHCCCc
Confidence            9 999999999999955544

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=91.81  E-value=0.16  Score=37.92  Aligned_cols=15  Identities=33%  Similarity=0.443  Sum_probs=13.5

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||+.+--+|
T Consensus        15 vGptGvGKTTTiAKLA   30 (211)
T d2qy9a2          15 VGVNGVGKTTTIGKLA   30 (211)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999888888

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.75  E-value=0.033  Score=39.62  Aligned_cols=15  Identities=33%  Similarity=0.483  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||||||+|+..+.
T Consensus         8 vG~~~vGKSSLi~~l~   23 (184)
T d1vg8a_           8 LGDSGVGKTSLMNQYV   23 (184)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            49 9999999999998

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.70  E-value=0.022  Score=40.90  Aligned_cols=14  Identities=21%  Similarity=0.420  Sum_probs=13.7

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | .|+||||+++.|+
T Consensus        16 G~~GsGKTTl~~~L~   30 (197)
T d2vp4a1          16 GNIGSGKTTYLNHFE   30 (197)
T ss_dssp             CSTTSCHHHHHHTTG
T ss_pred             CCCCCCHHHHHHHHH
Confidence            9 9999999999999

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=91.69  E-value=0.032  Score=40.88  Aligned_cols=18  Identities=28%  Similarity=0.512  Sum_probs=15.2

Q ss_pred             c-CCCcHHHHHHHHHcccc
Q 036857           44 G-PYTGKSSLIAAMADLDL   61 (170)
Q Consensus        44 G-PGtGKT~la~aiA~~~l   61 (170)
                      | +|+|||++|+.+...+.
T Consensus         9 G~igSGKStv~~~l~~~G~   27 (205)
T d1jjva_           9 GGIGSGKTTIANLFTDLGV   27 (205)
T ss_dssp             CSTTSCHHHHHHHHHTTTC
T ss_pred             CCCCCCHHHHHHHHHHCCC
Confidence            9 99999999999984443

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.64  E-value=0.033  Score=43.87  Aligned_cols=14  Identities=29%  Similarity=0.223  Sum_probs=13.1

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||+||||+++.|.
T Consensus        34 G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          34 GPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CCTTSSHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHH
Confidence            8 9999999999886

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=91.52  E-value=0.063  Score=38.67  Aligned_cols=19  Identities=26%  Similarity=0.310  Sum_probs=16.0

Q ss_pred             cc-CCCcHHHHHHHHH-cccc
Q 036857           43 WG-PYTGKSSLIAAMA-DLDL   61 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA-~~~l   61 (170)
                      .| =|+|||+++|+++ .++.
T Consensus        39 ~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          39 NGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             ECSTTSSHHHHHHHHHHHTTC
T ss_pred             ecCCCccHHHHHHHHHhhccc
Confidence            59 9999999999999 4433

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=91.32  E-value=0.036  Score=40.41  Aligned_cols=14  Identities=21%  Similarity=0.321  Sum_probs=13.5

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | +|+||||.++.++
T Consensus         9 G~dGsGKsT~~~~L~   23 (210)
T d4tmka_           9 GLEGAGKTTARNVVV   23 (210)
T ss_dssp             ECTTSCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHH
Confidence            9 9999999999998

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=91.25  E-value=0.059  Score=42.82  Aligned_cols=15  Identities=27%  Similarity=0.501  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| +|+|||++.+|++
T Consensus       172 ~G~tgSGKTT~l~al~  187 (323)
T d1g6oa_         172 CGGTGSGKTTYIKSIM  187 (323)
T ss_dssp             EESTTSSHHHHHHHHG
T ss_pred             EeeccccchHHHHHHh
Confidence            39 9999999999999

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.25  E-value=0.038  Score=39.05  Aligned_cols=15  Identities=33%  Similarity=0.328  Sum_probs=13.9

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|++.+.
T Consensus        12 vG~~~vGKTsLi~r~~   27 (173)
T d2fn4a1          12 VGGGGVGKSALTIQFI   27 (173)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            49 9999999999988

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.24  E-value=0.04  Score=39.94  Aligned_cols=15  Identities=33%  Similarity=0.452  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.++
T Consensus         6 ~GPsGsGK~tl~~~L~   21 (190)
T d1lvga_           6 SGPSGAGKSTLLKKLF   21 (190)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999998

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.24  E-value=0.21  Score=37.67  Aligned_cols=15  Identities=33%  Similarity=0.399  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| =..|||++.|++|
T Consensus        47 TGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          47 TGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             eccCchhhHHHHHHHH
Confidence            49 8999999999999

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.13  E-value=0.043  Score=38.38  Aligned_cols=15  Identities=33%  Similarity=0.410  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|++.+.
T Consensus         9 vG~~~vGKTsli~r~~   24 (167)
T d1c1ya_           9 LGSGGVGKSALTVQFV   24 (167)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999998

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.11  E-value=0.043  Score=38.55  Aligned_cols=15  Identities=33%  Similarity=0.592  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|.+.+.
T Consensus         8 vG~~~vGKTsli~r~~   23 (168)
T d2atva1           8 FGRAGVGKSALVVRFL   23 (168)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999999

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.08  E-value=0.043  Score=38.04  Aligned_cols=15  Identities=27%  Similarity=0.399  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||+|++.+.
T Consensus         8 iG~~~vGKTsLl~~~~   23 (165)
T d1z06a1           8 IGDSNVGKTCLTYRFC   23 (165)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            49 9999999999998

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.07  E-value=0.043  Score=38.80  Aligned_cols=15  Identities=40%  Similarity=0.503  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++++.
T Consensus        13 vG~~~vGKTsli~~l~   28 (177)
T d1x3sa1          13 IGESGVGKSSLLLRFT   28 (177)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            49 9999999999998

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.00  E-value=0.21  Score=35.91  Aligned_cols=31  Identities=16%  Similarity=0.174  Sum_probs=19.1

Q ss_pred             ceeEeeechhhhccCCccchHHHHHHHHHhhch
Q 036857           69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGL  101 (170)
Q Consensus        69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~  101 (170)
                      -.+|++||++.+....  .......+++.+...
T Consensus       139 ~~~ii~DE~h~~~~~~--r~~~~~~~l~~i~~~  169 (202)
T d2p6ra3         139 VSCLVVDEIHLLDSEK--RGATLEILVTKMRRM  169 (202)
T ss_dssp             CCEEEETTGGGGGCTT--THHHHHHHHHHHHHH
T ss_pred             hhhccccHHHHhcccc--cchHHHHHHHHHHhc
Confidence            5789999999876521  122344455656554

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=90.97  E-value=0.039  Score=43.82  Aligned_cols=14  Identities=29%  Similarity=0.385  Sum_probs=13.6

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | +|+|||++|+.|+
T Consensus        87 G~sgSGKSTla~~L~  101 (308)
T d1sq5a_          87 GSVAVGKSTTARVLQ  101 (308)
T ss_dssp             ECTTSSHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHH
Confidence            8 9999999999998

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.93  E-value=0.045  Score=38.31  Aligned_cols=15  Identities=33%  Similarity=0.463  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|++.+.
T Consensus         8 vG~~~vGKSsLi~~~~   23 (175)
T d1ky3a_           8 LGDSGVGKTSLMHRYV   23 (175)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            59 9999999999987

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.74  E-value=0.048  Score=39.25  Aligned_cols=15  Identities=40%  Similarity=0.494  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.++
T Consensus         7 ~GpsG~GK~tl~~~L~   22 (186)
T d1gkya_           7 SGPSGTGKSTLLKKLF   22 (186)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999998

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.65  E-value=0.05  Score=38.17  Aligned_cols=15  Identities=40%  Similarity=0.589  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.+.
T Consensus         7 vG~~~vGKTsLi~~~~   22 (168)
T d2gjsa1           7 LGAPGVGKSALARIFG   22 (168)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHh
Confidence            49 9999999999998

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=90.62  E-value=0.046  Score=39.11  Aligned_cols=15  Identities=40%  Similarity=0.556  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||||.+++.
T Consensus        29 vG~~n~GKSTLin~L~   44 (195)
T d1svia_          29 AGRSNVGKSSFINSLI   44 (195)
T ss_dssp             EEBTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHhc
Confidence            49 9999999999997

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.62  E-value=0.05  Score=38.75  Aligned_cols=14  Identities=29%  Similarity=0.603  Sum_probs=13.6

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||+|||++++.++
T Consensus         9 GpsG~GK~tl~~~L~   23 (182)
T d1znwa1           9 GPSAVGKSTVVRCLR   23 (182)
T ss_dssp             CSTTSSHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHH
Confidence            9 9999999999998

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.62  E-value=0.047  Score=38.07  Aligned_cols=15  Identities=40%  Similarity=0.477  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||+|.+.+.
T Consensus        10 iG~~~vGKTsLl~~~~   25 (167)
T d1xtqa1          10 LGYRSVGKSSLTIQFV   25 (167)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            49 9999999999988

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=90.62  E-value=0.044  Score=38.34  Aligned_cols=15  Identities=33%  Similarity=0.636  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++.+++.
T Consensus        22 vG~~~vGKSsLi~~l~   37 (176)
T d1fzqa_          22 LGLDNAGKTTLLKQLA   37 (176)
T ss_dssp             EESTTSSHHHHHHHHC
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999998

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=90.60  E-value=0.047  Score=38.33  Aligned_cols=15  Identities=40%  Similarity=0.536  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|..++.
T Consensus         6 vG~~nvGKSsLin~l~   21 (184)
T d2cxxa1           6 AGRSNVGKSTLIYRLT   21 (184)
T ss_dssp             EEBTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999998

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.59  E-value=0.048  Score=38.09  Aligned_cols=15  Identities=40%  Similarity=0.698  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|..++.
T Consensus        11 iG~~nvGKSSLin~L~   26 (179)
T d1egaa1          11 VGRPNVGKSTLLNKLL   26 (179)
T ss_dssp             ECSSSSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999997

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.56  E-value=0.051  Score=40.38  Aligned_cols=15  Identities=7%  Similarity=0.268  Sum_probs=12.3

Q ss_pred             ceeEeeechhhhccC
Q 036857           69 RSILVIEDAVTSFES   83 (170)
Q Consensus        69 p~il~iDEiD~~~~~   83 (170)
                      -..+++||+|.++..
T Consensus       163 ~~~vVvDE~d~~l~~  177 (237)
T d1gkub1         163 FDFIFVDDVDAILKA  177 (237)
T ss_dssp             CSEEEESCHHHHHTS
T ss_pred             CCEEEEEChhhhhhc
Confidence            567899999998763

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.50  E-value=0.05  Score=38.06  Aligned_cols=15  Identities=33%  Similarity=0.534  Sum_probs=13.9

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|+..+.
T Consensus         9 vG~~~vGKTsLi~~~~   24 (170)
T d1ek0a_           9 LGEAAVGKSSIVLRFV   24 (170)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            49 9999999999988

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=90.50  E-value=0.049  Score=37.43  Aligned_cols=15  Identities=60%  Similarity=0.846  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|..++.
T Consensus         7 vG~~nvGKSsLin~l~   22 (161)
T d2gj8a1           7 AGRPNAGKSSLLNALA   22 (161)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999998

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.48  E-value=0.052  Score=38.54  Aligned_cols=15  Identities=27%  Similarity=0.426  Sum_probs=13.9

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++.+.+.
T Consensus        11 iG~~~vGKTsli~~~~   26 (183)
T d1mh1a_          11 VGDGAVGKTCLLISYT   26 (183)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999988

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.39  E-value=0.46  Score=34.93  Aligned_cols=16  Identities=0%  Similarity=0.077  Sum_probs=13.4

Q ss_pred             CcccccCChhhHHHhh
Q 036857           24 TSNTIATDFDMNKALV   39 (170)
Q Consensus        24 ~~~~v~~~~~~k~~l~   39 (170)
                      +|+++.+++.+.+.|.
T Consensus        13 sF~~l~L~~~l~~~L~   28 (218)
T d2g9na1          13 SFDDMNLSESLLRGIY   28 (218)
T ss_dssp             CGGGSCCCHHHHHHHH
T ss_pred             CHHHCCCCHHHHHHHH
Confidence            7999999998888774

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.33  E-value=0.051  Score=38.31  Aligned_cols=15  Identities=27%  Similarity=0.359  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||+|+..+.
T Consensus         8 vG~~~vGKTsLi~~~~   23 (177)
T d1kmqa_           8 VGDGACGKTCLLIVNS   23 (177)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            49 9999999999998

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.22  E-value=0.057  Score=37.78  Aligned_cols=15  Identities=27%  Similarity=0.430  Sum_probs=13.9

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++++.+.
T Consensus        12 vG~~~vGKTsli~~~~   27 (170)
T d2g6ba1          12 VGDSGVGKTCLLVRFK   27 (170)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            39 9999999999987

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=90.07  E-value=0.06  Score=37.43  Aligned_cols=15  Identities=33%  Similarity=0.793  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|...+.
T Consensus         8 ~G~~~~GKTsLl~~l~   23 (164)
T d1zd9a1           8 VGLQYSGKTTFVNVIA   23 (164)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999998

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.04  E-value=0.06  Score=37.93  Aligned_cols=15  Identities=40%  Similarity=0.450  Sum_probs=13.9

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||+|++.+.
T Consensus         9 vG~~~vGKTsLi~~~~   24 (172)
T d2g3ya1           9 IGEQGVGKSTLANIFA   24 (172)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            39 9999999999998

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEAD box RNA helicase rck/p54
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.93  E-value=0.66  Score=33.61  Aligned_cols=14  Identities=14%  Similarity=0.354  Sum_probs=12.1

Q ss_pred             ceeEeeechhhhcc
Q 036857           69 RSILVIEDAVTSFE   82 (170)
Q Consensus        69 p~il~iDEiD~~~~   82 (170)
                      -..+++||+|.++.
T Consensus       147 l~~lVlDEaD~ll~  160 (206)
T d1veca_         147 VQMIVLDEADKLLS  160 (206)
T ss_dssp             CCEEEEETHHHHTS
T ss_pred             cceEEEeccccccc
Confidence            55789999999987

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.70  E-value=0.058  Score=41.64  Aligned_cols=15  Identities=27%  Similarity=0.514  Sum_probs=14.2

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| .|+|||+++++|+
T Consensus        34 iG~sGsGKSTLl~~i~   49 (258)
T d1b0ua_          34 IGSSGSGKSTFLRCIN   49 (258)
T ss_dssp             ECCTTSSHHHHHHHHT
T ss_pred             ECCCCCcHHHHHHHHH
Confidence            39 9999999999999

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.70  E-value=0.06  Score=39.73  Aligned_cols=14  Identities=29%  Similarity=0.399  Sum_probs=13.5

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | .|+||||.++.++
T Consensus        10 G~dGsGKsT~~~~L~   24 (209)
T d1nn5a_          10 GVDRAGKSTQSRKLV   24 (209)
T ss_dssp             ESTTSSHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHH
Confidence            9 9999999999998

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=89.67  E-value=0.067  Score=37.69  Aligned_cols=15  Identities=47%  Similarity=0.713  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+|..++.
T Consensus        14 iG~~~~GKSTLin~l~   29 (186)
T d1mkya2          14 VGRPNVGKSTLFNAIL   29 (186)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            59 9999999999997

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.65  E-value=0.068  Score=37.52  Aligned_cols=15  Identities=40%  Similarity=0.445  Sum_probs=13.9

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+++..+.
T Consensus        12 vG~~~vGKSSli~~~~   27 (174)
T d1wmsa_          12 LGDGGVGKSSLMNRYV   27 (174)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999887

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=89.32  E-value=0.38  Score=35.96  Aligned_cols=15  Identities=33%  Similarity=0.488  Sum_probs=13.9

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| =..|||++.|+++
T Consensus        41 TGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          41 TGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             ESCSSSSHHHHHHHHH
T ss_pred             ECCCccccchhhhhhH
Confidence            59 8899999999999

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.29  E-value=0.075  Score=37.30  Aligned_cols=15  Identities=33%  Similarity=0.295  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++++.++
T Consensus        10 vG~~~vGKTsll~~~~   25 (169)
T d1x1ra1          10 VGDGGVGKSALTIQFF   25 (169)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            39 9999999999998

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.22  E-value=0.056  Score=38.15  Aligned_cols=15  Identities=67%  Similarity=0.922  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++..++.
T Consensus         7 vG~~nvGKSTLin~L~   22 (180)
T d1udxa2           7 VGYPNAGKSSLLAAMT   22 (180)
T ss_dssp             ECCGGGCHHHHHHHHC
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            59 9999999999997

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=89.10  E-value=0.055  Score=38.23  Aligned_cols=15  Identities=20%  Similarity=0.446  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||++.+.+.
T Consensus        23 vG~~~vGKTsLi~~l~   38 (182)
T d1moza_          23 LGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             EEETTSSHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999998

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=88.99  E-value=0.057  Score=38.19  Aligned_cols=15  Identities=40%  Similarity=0.753  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| |++|||+|..++.
T Consensus         7 iG~~nvGKSSLin~L~   22 (185)
T d1lnza2           7 VGFPSVGKSTLLSVVS   22 (185)
T ss_dssp             ESSTTSSHHHHHHHSE
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999997

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.93  E-value=0.076  Score=37.76  Aligned_cols=15  Identities=33%  Similarity=0.550  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| +|+|||++++.+.
T Consensus         8 iG~~~vGKTsli~r~~   23 (179)
T d1m7ba_           8 VGDSQCGKTALLHVFA   23 (179)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            39 9999999999998

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.85  E-value=0.077  Score=37.93  Aligned_cols=15  Identities=27%  Similarity=0.426  Sum_probs=13.9

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| +|+|||++++.+.
T Consensus         9 lG~~~vGKTSli~r~~   24 (191)
T d2ngra_           9 VGDGAVGKTCLLISYT   24 (191)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            49 9999999999988

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.70  E-value=0.43  Score=34.94  Aligned_cols=14  Identities=7%  Similarity=0.328  Sum_probs=11.9

Q ss_pred             ceeEeeechhhhcc
Q 036857           69 RSILVIEDAVTSFE   82 (170)
Q Consensus        69 p~il~iDEiD~~~~   82 (170)
                      ...+++||+|.++.
T Consensus       152 l~~lVlDEad~lld  165 (212)
T d1qdea_         152 IKMFILDEADEMLS  165 (212)
T ss_dssp             CCEEEEETHHHHHH
T ss_pred             ceEEeehhhhhhcc
Confidence            66788999999986

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.67  E-value=0.045  Score=40.10  Aligned_cols=14  Identities=29%  Similarity=0.532  Sum_probs=13.7

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | -|+||||+++.|+
T Consensus         9 G~dGsGKST~~~~L~   23 (241)
T d1p5zb_           9 GNIAAGKSTFVNILK   23 (241)
T ss_dssp             CSTTSSHHHHHTTTG
T ss_pred             CCCCCCHHHHHHHHH
Confidence            8 9999999999999

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.49  E-value=0.082  Score=38.86  Aligned_cols=14  Identities=29%  Similarity=0.529  Sum_probs=13.7

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | -|+||||+++.++
T Consensus         9 G~~GsGKST~~~~L~   23 (241)
T d2ocpa1           9 GNIAVGKSTFVKLLT   23 (241)
T ss_dssp             ECTTSSHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHH
Confidence            8 9999999999999

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.49  E-value=0.047  Score=38.46  Aligned_cols=15  Identities=27%  Similarity=0.341  Sum_probs=13.8

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| ||+|||++..++.
T Consensus         9 vG~~~vGKTsli~~~~   24 (170)
T d1i2ma_           9 VGDGGTGKTTFVKRHL   24 (170)
T ss_dssp             EECTTSSHHHHHHTTC
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            39 9999999999987

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.37  E-value=0.028  Score=38.75  Aligned_cols=15  Identities=40%  Similarity=0.694  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| ||+|||+++.++.
T Consensus         6 iG~~n~GKSSLin~l~   21 (160)
T d1xzpa2           6 VGKPNVGKSTLLNRLL   21 (160)
T ss_dssp             ECCHHHHTCHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999998

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=88.13  E-value=0.087  Score=41.92  Aligned_cols=14  Identities=43%  Similarity=0.800  Sum_probs=13.5

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||.|||+|..+++
T Consensus        61 G~pGaGKSTLi~~l~   75 (327)
T d2p67a1          61 GTPGAGKSTFLEAFG   75 (327)
T ss_dssp             ECTTSCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHH
Confidence            9 9999999999998

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=88.10  E-value=0.094  Score=41.62  Aligned_cols=14  Identities=50%  Similarity=0.757  Sum_probs=13.4

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||.|||++.-+++
T Consensus        58 G~pGaGKSTli~~l~   72 (323)
T d2qm8a1          58 GVPGVGKSTTIDALG   72 (323)
T ss_dssp             CCTTSCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHH
Confidence            9 9999999999998

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.04  E-value=0.14  Score=37.13  Aligned_cols=14  Identities=36%  Similarity=0.570  Sum_probs=13.0

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | .|+|||++|..+|
T Consensus         9 ~KGGvGKTtia~nlA   23 (232)
T d1hyqa_           9 GKGGTGKTTITANLG   23 (232)
T ss_dssp             SSSCSCHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHH
Confidence            5 9999999999998

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=87.93  E-value=0.048  Score=37.92  Aligned_cols=15  Identities=33%  Similarity=0.492  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| |++|||+|.+++.
T Consensus        22 vG~~NvGKSSL~n~L~   37 (188)
T d1puia_          22 AGRSNAGKSSALNTLT   37 (188)
T ss_dssp             EECTTSSHHHHHTTTC
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            59 9999999999997

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.53  E-value=0.39  Score=37.39  Aligned_cols=15  Identities=33%  Similarity=0.395  Sum_probs=13.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| ||+|||+++..++
T Consensus        74 f~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          74 IGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ecCCCCChHHHHHHHH
Confidence            68 9999999988777

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=87.24  E-value=0.12  Score=38.11  Aligned_cols=14  Identities=21%  Similarity=0.349  Sum_probs=13.6

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | .||||||+|+.++
T Consensus         8 G~igSGKsTva~~l~   22 (241)
T d1deka_           8 GVKRSGKDTTADFIM   22 (241)
T ss_dssp             CCTTSSHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHH
Confidence            8 9999999999998

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.18  E-value=0.12  Score=36.60  Aligned_cols=15  Identities=33%  Similarity=0.545  Sum_probs=13.8

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| +|+|||++.+.+.
T Consensus         8 lG~~~vGKTsll~r~~   23 (200)
T d1zcba2           8 LGAGESGKSTFLKQMR   23 (200)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999997

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.81  E-value=0.71  Score=35.71  Aligned_cols=15  Identities=33%  Similarity=0.581  Sum_probs=13.9

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| +|||||+++..+|
T Consensus        74 f~~~g~GKt~l~~~i~   89 (276)
T d2jdid3          74 FGGAGVGKTVLIMELI   89 (276)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHH
Confidence            68 9999999999887

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.73  E-value=0.12  Score=39.10  Aligned_cols=15  Identities=47%  Similarity=0.550  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| +|+|||+|..++.
T Consensus       101 ~G~SGVGKSTLiN~L~  116 (225)
T d1u0la2         101 AGLSGVGKSSLLNAIN  116 (225)
T ss_dssp             ECSTTSSHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHhhc
Confidence            49 9999999999997

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.56  E-value=0.58  Score=34.47  Aligned_cols=14  Identities=29%  Similarity=0.487  Sum_probs=13.3

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | .|+||||+.+.+.
T Consensus        10 GFLGaGKTTll~~lL   24 (222)
T d1nija1          10 GFLGAGKTTLLRHIL   24 (222)
T ss_dssp             ESSSSSCHHHHHHHH
T ss_pred             eCCCCCHHHHHHHHH
Confidence            8 9999999999987

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=86.49  E-value=0.1  Score=41.51  Aligned_cols=11  Identities=45%  Similarity=0.730  Sum_probs=10.2

Q ss_pred             cc-CCCcHHHHH
Q 036857           43 WG-PYTGKSSLI   53 (170)
Q Consensus        43 ~G-PGtGKT~la   53 (170)
                      || +|||||+|.
T Consensus        20 FGLSGTGKTTLs   31 (313)
T d2olra1          20 FGLSGTGKTTLS   31 (313)
T ss_dssp             ECSTTSSHHHHH
T ss_pred             EccCCCCcccce
Confidence            79 999999976

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=86.09  E-value=0.2  Score=36.17  Aligned_cols=13  Identities=31%  Similarity=0.434  Sum_probs=12.4

Q ss_pred             CCCcHHHHHHHHH
Q 036857           45 PYTGKSSLIAAMA   57 (170)
Q Consensus        45 PGtGKT~la~aiA   57 (170)
                      .|+|||++|..+|
T Consensus        12 GGvGKTtia~nLA   24 (237)
T d1g3qa_          12 GGTGKTTVTANLS   24 (237)
T ss_dssp             TTSSHHHHHHHHH
T ss_pred             CCCcHHHHHHHHH
Confidence            8999999999998

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=85.99  E-value=0.11  Score=41.44  Aligned_cols=11  Identities=45%  Similarity=0.730  Sum_probs=10.4

Q ss_pred             cc-CCCcHHHHH
Q 036857           43 WG-PYTGKSSLI   53 (170)
Q Consensus        43 ~G-PGtGKT~la   53 (170)
                      || +|||||+|.
T Consensus        20 FGLSGTGKTTLs   31 (323)
T d1ii2a1          20 FGLSGTGKTTLS   31 (323)
T ss_dssp             ECCTTSSHHHHH
T ss_pred             EccCCCCcccce
Confidence            89 999999987

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=85.86  E-value=0.15  Score=36.31  Aligned_cols=13  Identities=23%  Similarity=0.238  Sum_probs=11.4

Q ss_pred             CCCcHHHHHHHHH
Q 036857           45 PYTGKSSLIAAMA   57 (170)
Q Consensus        45 PGtGKT~la~aiA   57 (170)
                      +|+|||+++-.+|
T Consensus        11 ~GVGKTtvs~~La   23 (224)
T d1byia_          11 TEVGKTVASCALL   23 (224)
T ss_dssp             TTSCHHHHHHHHH
T ss_pred             CCccHHHHHHHHH
Confidence            8999999877777

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=85.39  E-value=0.074  Score=41.85  Aligned_cols=14  Identities=21%  Similarity=0.354  Sum_probs=10.5

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | +|+|||+++++++
T Consensus        11 G~SGSGKTTva~~l~   25 (288)
T d1a7ja_          11 GSSGAGTSTVKHTFD   25 (288)
T ss_dssp             SCC---CCTHHHHHH
T ss_pred             CCCCCcHHHHHHHHH
Confidence            8 9999999999998

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=85.34  E-value=0.14  Score=38.31  Aligned_cols=15  Identities=33%  Similarity=0.399  Sum_probs=9.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||+.+--+|
T Consensus        18 vGptGvGKTTTiAKLA   33 (211)
T d1j8yf2          18 VGVQGTGKATTAGKLA   33 (211)
T ss_dssp             ECSCCC----HHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999888888

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=85.34  E-value=1  Score=32.48  Aligned_cols=14  Identities=7%  Similarity=0.278  Sum_probs=11.8

Q ss_pred             ceeEeeechhhhcc
Q 036857           69 RSILVIEDAVTSFE   82 (170)
Q Consensus        69 p~il~iDEiD~~~~   82 (170)
                      =..+++||+|.++.
T Consensus       146 l~~lViDEad~l~~  159 (208)
T d1hv8a1         146 VKYFILDEADEMLN  159 (208)
T ss_dssp             CCEEEEETHHHHHT
T ss_pred             CcEEEEEChHHhhc
Confidence            45899999999876

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=85.21  E-value=0.11  Score=41.32  Aligned_cols=12  Identities=42%  Similarity=0.686  Sum_probs=10.3

Q ss_pred             cc-CCCcHHHHHH
Q 036857           43 WG-PYTGKSSLIA   54 (170)
Q Consensus        43 ~G-PGtGKT~la~   54 (170)
                      || +|||||+|..
T Consensus        20 fGLSGTGKTTLs~   32 (318)
T d1j3ba1          20 FGLSGTGKTTLST   32 (318)
T ss_dssp             EECTTSCHHHHTC
T ss_pred             EccCCCCcccccc
Confidence            89 9999998653

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.91  E-value=0.17  Score=37.18  Aligned_cols=14  Identities=29%  Similarity=0.387  Sum_probs=13.5

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | -|+||||.++.++
T Consensus        10 G~DGsGKST~~~~L~   24 (214)
T d1tmka_          10 GLDRTGKTTQCNILY   24 (214)
T ss_dssp             ESTTSSHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHH
Confidence            8 9999999999999

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.48  E-value=0.2  Score=35.47  Aligned_cols=15  Identities=47%  Similarity=0.603  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++...+.
T Consensus        11 lG~~~vGKTsLi~~~~   26 (175)
T d2bmja1          11 LGDARSGKSSLIHRFL   26 (175)
T ss_dssp             ECCTTTTHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999998

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=84.38  E-value=0.24  Score=39.41  Aligned_cols=15  Identities=47%  Similarity=0.534  Sum_probs=13.3

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||.+++.++
T Consensus        56 ~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          56 NGATGTGKSVLLRELA   71 (433)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             EeCCCCcHHHHHHHHH
Confidence            59 9999999988776

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=84.27  E-value=0.21  Score=36.37  Aligned_cols=14  Identities=29%  Similarity=0.354  Sum_probs=13.4

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||+|||++|.++.
T Consensus        21 G~sG~GKStlal~l~   35 (176)
T d1kkma_          21 GDSGVGKSETALELV   35 (176)
T ss_dssp             CCTTSCHHHHHHHHH
T ss_pred             eCCCCCHHHHHHHHH
Confidence            9 9999999999988

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=83.47  E-value=0.23  Score=37.33  Aligned_cols=14  Identities=57%  Similarity=0.740  Sum_probs=13.8

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | .|+|||++.++++
T Consensus        32 G~nGaGKSTLl~~l~   46 (231)
T d1l7vc_          32 GPNGAGKSTLLARMA   46 (231)
T ss_dssp             CCTTSSHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHh
Confidence            9 9999999999999

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.26  E-value=0.22  Score=34.74  Aligned_cols=15  Identities=40%  Similarity=0.572  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| +|+|||++.+.+.
T Consensus         8 lG~~~vGKTsll~r~~   23 (200)
T d2bcjq2           8 LGTGESGKSTFIKQMR   23 (200)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            49 9999999999998

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=82.53  E-value=0.26  Score=36.10  Aligned_cols=15  Identities=47%  Similarity=0.450  Sum_probs=13.9

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| +|+|||++.+.+.
T Consensus         8 ~GPSG~GK~tl~~~L~   23 (205)
T d1s96a_           8 SAPSGAGKSSLIQALL   23 (205)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            39 9999999999998

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.33  E-value=0.27  Score=35.05  Aligned_cols=15  Identities=13%  Similarity=0.284  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| +|+|||++++.+.
T Consensus         9 ~Gpsg~GK~tl~~~L~   24 (178)
T d1kgda_           9 LGAHGVGRRHIKNTLI   24 (178)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            49 9999999999998

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=82.19  E-value=0.26  Score=35.86  Aligned_cols=16  Identities=25%  Similarity=0.241  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHHc
Q 036857           43 WG-PYTGKSSLIAAMAD   58 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA~   58 (170)
                      -| +|.|||++|.++..
T Consensus        21 ~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          21 TGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EESSSSSHHHHHHHHHT
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            39 99999999999883

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=81.85  E-value=0.35  Score=36.57  Aligned_cols=15  Identities=27%  Similarity=0.412  Sum_probs=12.6

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| =|+|||++|-.+|
T Consensus         8 sgKGGVGKTT~a~NLA   23 (289)
T d2afhe1           8 YGKGGIGKSTTTQNLV   23 (289)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            57 7999999777776

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=81.24  E-value=0.13  Score=39.08  Aligned_cols=15  Identities=47%  Similarity=0.581  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      -| +|+|||+|..++.
T Consensus       103 ~G~SGVGKSSLiN~L~  118 (231)
T d1t9ha2         103 AGQSGVGKSSLLNAIS  118 (231)
T ss_dssp             EESHHHHHHHHHHHHC
T ss_pred             ECCCCccHHHHHHhhc
Confidence            39 9999999999997

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=80.61  E-value=0.32  Score=35.02  Aligned_cols=14  Identities=29%  Similarity=0.318  Sum_probs=13.2

Q ss_pred             c-CCCcHHHHHHHHH
Q 036857           44 G-PYTGKSSLIAAMA   57 (170)
Q Consensus        44 G-PGtGKT~la~aiA   57 (170)
                      | ||.|||++|-++.
T Consensus        22 G~sg~GKS~la~~l~   36 (169)
T d1ko7a2          22 GDSGIGKSETALELI   36 (169)
T ss_dssp             ESTTSSHHHHHHHHH
T ss_pred             eCCCCCHHHHHHHHH
Confidence            9 9999999998887

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=80.50  E-value=0.31  Score=38.12  Aligned_cols=15  Identities=33%  Similarity=0.558  Sum_probs=14.0

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      +| +|||||+++..++
T Consensus        49 ~g~~g~GKT~l~~~i~   64 (289)
T d1xpua3          49 VAPPKAGKTMLLQNIA   64 (289)
T ss_dssp             EECSSSSHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHH
Confidence            69 9999999999888

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=80.26  E-value=0.34  Score=36.13  Aligned_cols=15  Identities=40%  Similarity=0.373  Sum_probs=13.4

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| =|+|||++|-++|
T Consensus        14 sGKGGVGKTTvaa~lA   29 (296)
T d1ihua1          14 TGKGGVGKTSISCATA   29 (296)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCcChHHHHHHHHH
Confidence            38 9999999888888

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=80.11  E-value=0.34  Score=34.08  Aligned_cols=15  Identities=27%  Similarity=0.503  Sum_probs=14.1

Q ss_pred             cc-CCCcHHHHHHHHH
Q 036857           43 WG-PYTGKSSLIAAMA   57 (170)
Q Consensus        43 ~G-PGtGKT~la~aiA   57 (170)
                      .| |.+|||+|..++.
T Consensus        11 iG~~naGKSTL~n~L~   26 (179)
T d1wb1a4          11 FGHIDHGKTTLSKVLT   26 (179)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             EeCCCCcHHHHHHHHH
Confidence            49 9999999999997