Citrus Sinensis ID: 036907

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
MSEKMKRKHYTDLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSEMSGGIFNARTKIDKGRGGNIENITIRYIKMERVKIPIRIGRGSNSHPDEGRDPKALPKIRGISFVNVVSVNTIKAPVRAGIIVLAPSVKWQSQFVSGFNSQVFPLPCPQLQNKTRFSWVTSYPFNSCLQNFPNFLRET
ccccccccccccccccEEEEEEEEEEcccEEEEcccccccccccccccccEEEEEEEEccccccEEEEcEEEEEEEEccEEEEEccccEEEEEEEEEEEEEEccccEEEEEcccccccccccccccccEEEcEEEEEEEEEccccccEEEEEEEccccccEEEEEEEccccEEEcccccccccccccEEEEcccccccccccccccccc
ccHHHHHHHcccccccEEEEcEEEEEcccEEEEEccccccccEcccccccEEEEEEEEEccccEEEEEEcccccccccEEEEccccccEEEEEEEEEEEEEEEEEEEEEEEcccccccccccccccccEEEEEEEEEEEEEccEEEEEEEcccccccccccEEEEEEEEcccccccccHHccccccccccccccccccccccccHHccc
msekmkrkhytdlstnvciedcyiesgNDLVAVKKGWNhygiamarpssnitmrrvsgttptysgvgigsemsggifnartkidkgrggnienITIRYIKMERvkipirigrgsnshpdegrdpkalpkirgisFVNVVSVNTIKAPVRAGIIVLapsvkwqsqfvsgfnsqvfplpcpqlqnktrfswvtsypfnsclqnfpnflret
msekmkrkhytdlstnvciEDCYIESGNDLVAVKKGWNHYGIAmarpssnitmrrVSGTtptysgvgigsemsggIFNArtkidkgrggnienitiryikmervKIPIrigrgsnshpdegrdpkalpkirgisfVNVVSVNTIKAPVRAGIIVLAPSVKWQSQFVSGFNSQVFPLPCPQLQNKTRFSWVTSypfnsclqnfpnflret
MSEKMKRKHYTDLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSEMSGGIFNARTKIDKGRGGNIENITIRYIKMERVKIPIRIGRGSNSHPDEGRDPKALPKIRGISFVNVVSVNTIKAPVRAGIIVLAPSVKWQSQFVSGFNSQVFPLPCPQLQNKTRFSWVTSYPFNSCLQNFPNFLRET
*********YTDLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSEMSGGIFNARTKIDKGRGGNIENITIRYIKMERVKIPIRIG****************PKIRGISFVNVVSVNTIKAPVRAGIIVLAPSVKWQSQFVSGFNSQVFPLPCPQLQNKTRFSWVTSYPFNSCLQNFPNF****
************LSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSEMSGGIFNARTKIDKGRGGNIENITIRYIKMERVKIPIRIGRGSNSHPDEGRDPKALPKIRGISFVNVVSVNTIKAPVRAGIIVLAPSVKWQSQFVSGFNSQVFPLPCP***********TSYPFNSCLQNFPNFL***
***********DLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSEMSGGIFNARTKIDKGRGGNIENITIRYIKMERVKIPIRIGRGS*********PKALPKIRGISFVNVVSVNTIKAPVRAGIIVLAPSVKWQSQFVSGFNSQVFPLPCPQLQNKTRFSWVTSYPFNSCLQNFPNFLRET
*****KRKHYTDLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSEMSGGIFNARTKIDKGRGGNIENITIRYIKMERVKIPIRIGRGSNSHPDEGRDPKALPKIRGISFVNVVSVNTIKAPVRAGIIVLAPSVKWQSQFVSGFNSQVFPLPCPQLQNKTRFSWVTSYPFNSCLQNFPNFLR**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSEKMKRKHYTDLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSEMSGGIFNARTKIDKGRGGNIENITIRYIKMERVKIPIRIGRGSNSHPDEGRDPKALPKIRGISFVNVVSVNTIKAPVRAGIIVLAPSVKWQSQFVSGFNSQVFPLPCPQLQNKTRFSWVTSYPFNSCLQNFPNFLRET
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query209 2.2.26 [Sep-21-2011]
A7PZL3491 Probable polygalacturonas no no 0.880 0.374 0.349 2e-26
>sp|A7PZL3|PGLR_VITVI Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1 Back     alignment and function desciption
 Score =  118 bits (296), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 108/223 (48%), Gaps = 39/223 (17%)

Query: 12  DLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSE 71
           D  TN  IEDCYI SG+D VAVK GW+ YGIA   P+  + +RR++  +P  + + +GSE
Sbjct: 255 DSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSAVIALGSE 314

Query: 72  MSGGIFNART--------------KIDKGRGGNIENITIRYIKMERVKIPIRIGRGSNSH 117
           MSGGI + R               K   GRGG +++I +R + M+ +K    +     SH
Sbjct: 315 MSGGIQDVRAEDIVAINSESGIRIKTGIGRGGYVKDIYVRGMTMKTMKWAFWMTGNYGSH 374

Query: 118 PDEGRDPKALPKIRGISFVNVVSVNTIKAPVRAGI--------------IVLAPSVK--- 160
            D   DPKA P I+GI++ ++V+ N   A    GI              I LA   K   
Sbjct: 375 ADNHYDPKAFPVIQGINYRDMVAENVSMAARLEGIPSDPFTGICISNVTIHLAAKAKKVP 434

Query: 161 WQSQFVSGFNSQVFPLPCPQLQNKTRFSWVTSYPFNSCLQNFP 203
           W    V G +S V P PC  L ++         P  + L NFP
Sbjct: 435 WTCTDVEGISSGVTPTPCSTLPDQG--------PEKTSLCNFP 469

Vitis vinifera (taxid: 29760)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query209
225431447 488 PREDICTED: probable polygalacturonase [V 0.889 0.381 0.569 1e-61
296088539 528 unnamed protein product [Vitis vinifera] 0.889 0.352 0.569 1e-61
224096000 445 predicted protein [Populus trichocarpa] 0.899 0.422 0.573 1e-60
255571381 480 polygalacturonase, putative [Ricinus com 0.861 0.375 0.583 1e-59
147776708 479 hypothetical protein VITISV_043959 [Viti 0.918 0.400 0.565 3e-59
449532729 332 PREDICTED: probable polygalacturonase-li 0.870 0.548 0.568 9e-58
224083446 394 predicted protein [Populus trichocarpa] 0.808 0.428 0.608 9e-58
449459262 472 PREDICTED: probable polygalacturonase-li 0.870 0.385 0.568 3e-57
356516364 477 PREDICTED: probable polygalacturonase-li 0.866 0.379 0.561 3e-57
357464681 775 Germin-like protein [Medicago truncatula 0.822 0.221 0.557 7e-55
>gi|225431447|ref|XP_002274138.1| PREDICTED: probable polygalacturonase [Vitis vinifera] Back     alignment and taxonomy information
 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 127/223 (56%), Positives = 147/223 (65%), Gaps = 37/223 (16%)

Query: 12  DLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSE 71
           D STNVCIEDCYIESG+DLVAVK GW+ YGIAMARPSSNI +RR+SGTTPT SGVGIGSE
Sbjct: 269 DSSTNVCIEDCYIESGDDLVAVKSGWDQYGIAMARPSSNIIVRRLSGTTPTCSGVGIGSE 328

Query: 72  MSGGIFN--------------ARTKIDKGRGGNIENITIRYIKMERVKIPIRIGRGSNSH 117
           MSGGI N               R K DKGRGG + NITI  I+MERVK+PIR  RGSN H
Sbjct: 329 MSGGISNVTMEDLHIWDSAAGVRIKTDKGRGGYVVNITINNIRMERVKVPIRFSRGSNDH 388

Query: 118 PDEGRDPKALPKIRGISFVNVVSVNTIKAPVRAGI---------------IVLAPSVKWQ 162
           PD+G DPKA+PKI+GI   NVVS+N+ KAP+  GI               + LAP+ KW 
Sbjct: 389 PDDGWDPKAVPKIKGIFISNVVSLNSTKAPLLEGIEGAPYEGICMKNVTLLGLAPAAKWH 448

Query: 163 SQFVSGFNSQVFPLPCPQLQNKTRFSWVTSYPFNSCLQNFPNF 205
            +FVSGF   VFP+ CPQ+Q+    SW        CL +  N 
Sbjct: 449 CEFVSGFTDAVFPVSCPQMQSNVSSSW--------CLDHLGNL 483

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296088539|emb|CBI37530.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224096000|ref|XP_002310517.1| predicted protein [Populus trichocarpa] gi|222853420|gb|EEE90967.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255571381|ref|XP_002526639.1| polygalacturonase, putative [Ricinus communis] gi|223534031|gb|EEF35751.1| polygalacturonase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147776708|emb|CAN76963.1| hypothetical protein VITISV_043959 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449532729|ref|XP_004173333.1| PREDICTED: probable polygalacturonase-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|224083446|ref|XP_002307030.1| predicted protein [Populus trichocarpa] gi|222856479|gb|EEE94026.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449459262|ref|XP_004147365.1| PREDICTED: probable polygalacturonase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356516364|ref|XP_003526865.1| PREDICTED: probable polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
>gi|357464681|ref|XP_003602622.1| Germin-like protein [Medicago truncatula] gi|355491670|gb|AES72873.1| Germin-like protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query209
TAIR|locus:2119156475 AT4G33440 [Arabidopsis thalian 0.674 0.296 0.612 1.9e-44
TAIR|locus:2098038471 AT3G62110 [Arabidopsis thalian 0.607 0.269 0.503 3.8e-30
TAIR|locus:2128524444 AT4G23820 [Arabidopsis thalian 0.641 0.301 0.469 7.1e-29
TAIR|locus:2152980449 AT5G41870 [Arabidopsis thalian 0.669 0.311 0.438 5e-28
TAIR|locus:2101313469 AT3G48950 [Arabidopsis thalian 0.674 0.300 0.393 1.6e-26
TAIR|locus:2117964495 AT4G23500 [Arabidopsis thalian 0.674 0.284 0.380 1.7e-24
TAIR|locus:2061396477 AT2G23900 [Arabidopsis thalian 0.655 0.287 0.361 2.7e-24
TAIR|locus:2202170506 AT1G19170 [Arabidopsis thalian 0.655 0.270 0.394 3.5e-22
TAIR|locus:2082787476 AT3G61490 [Arabidopsis thalian 0.674 0.296 0.354 8.5e-22
TAIR|locus:2078531484 AT3G42950 [Arabidopsis thalian 0.655 0.283 0.335 7.6e-19
TAIR|locus:2119156 AT4G33440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 95/155 (61%), Positives = 113/155 (72%)

Query:    12 DLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSE 71
             D STNVCIEDCYIESG+DLVAVK GW+ YG+A+ARPSSNI +RR+SGTT T SGVGIGSE
Sbjct:   264 DSSTNVCIEDCYIESGDDLVAVKSGWDQYGMAVARPSSNIVIRRISGTTRTCSGVGIGSE 323

Query:    72 MSGGIFNA--------------RTKIDKGRGGNIENITIRYIKMERVKIPIRIGRGSNSH 117
             MSGGIFN               R K DKGRGG I NIT   + +E+VK+PIR   GSN H
Sbjct:   324 MSGGIFNITVEDIHVWDSAAGLRIKTDKGRGGYISNITFNNVLLEKVKVPIRFSSGSNDH 383

Query:   118 PDEGRDPKALPKIRGISFVNVVSVNTIKAPVRAGI 152
              D+  DPKALP+++GI   NVVS+N+ KAP+  G+
Sbjct:   384 SDDKWDPKALPRVKGIYISNVVSLNSRKAPMLLGV 418
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
TAIR|locus:2098038 AT3G62110 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128524 AT4G23820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152980 AT5G41870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101313 AT3G48950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117964 AT4G23500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061396 AT2G23900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202170 AT1G19170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082787 AT3G61490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078531 AT3G42950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query209
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 2e-12
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 8e-04
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information 
 Score = 65.2 bits (159), Expect = 2e-12
 Identities = 43/154 (27%), Positives = 62/154 (40%), Gaps = 19/154 (12%)

Query: 14  STNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMR--RVSGTTPTYSGVGIGSE 71
            +NV IE C  ++G+D +A+K G    G     PS NI +R    S     + G+ +GSE
Sbjct: 295 CSNVLIEGCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSG---HGGLVLGSE 351

Query: 72  MSGGIFNA--------------RTKIDKGRGGNIENITIRYIKMERVKIPIRIGRGSNSH 117
           M GG+ N               R K + GRGG + NI     KM  VK  + I +G  + 
Sbjct: 352 MGGGVQNITVEDCVMDNTDRGLRIKTNDGRGGGVRNIVFEDNKMRNVKTKLSINKGQITF 411

Query: 118 PDEGRDPKALPKIRGISFVNVVSVNTIKAPVRAG 151
               R       + G    +    +   A    G
Sbjct: 412 SIVDRGGLIDFVLSGSPSKDDKLTSKEGAQTVGG 445

Length = 542
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 209
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN02793443 Probable polygalacturonase 100.0
PLN02155394 polygalacturonase 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PLN03010409 polygalacturonase 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.88
PLN02218431 polygalacturonase ADPG 99.13
PLN02793443 Probable polygalacturonase 99.1
PLN02155394 polygalacturonase 99.09
PLN03003456 Probable polygalacturonase At3g15720 99.07
PLN03010409 polygalacturonase 99.05
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.05
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 98.98
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.34
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 98.07
smart00656190 Amb_all Amb_all domain. 96.85
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 96.5
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 96.09
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 96.02
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 95.99
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 95.24
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 94.78
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 94.07
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 93.82
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 93.54
smart00656190 Amb_all Amb_all domain. 92.51
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 92.43
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 92.31
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 91.51
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 91.43
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 89.08
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 88.52
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 88.32
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 84.74
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information 
Probab=100.00  E-value=5.5e-41  Score=309.20  Aligned_cols=170  Identities=24%  Similarity=0.318  Sum_probs=142.6

Q ss_pred             CCCCCceeeecCcccEEEEeeEEEcCCceEEEccCCCcCCcccCCceeeEEEEeEEEeCCCCCeEEEccccCC----CEE
Q 036907            2 SEKMKRKHYTDLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSEMSG----GIF   77 (209)
Q Consensus         2 ~~~NtDGIdi~~s~nV~I~nc~I~tgDDcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~~~~~~GIsIGSe~~g----~i~   77 (209)
                      +.+||||||+++|+||+|+||+|++||||||||+|           ++||+|+||+|+.  +|||+||||+.+    +|+
T Consensus       184 ~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksg-----------s~NI~I~n~~c~~--GHGISIGSlg~~g~~~~V~  250 (456)
T PLN03003        184 SSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSG-----------TSNIHISGIDCGP--GHGISIGSLGKDGETATVE  250 (456)
T ss_pred             CCCCCCcEeecCcceEEEEecEEecCCCeEEeCCC-----------CccEEEEeeEEEC--CCCeEEeeccCCCCcceEE
Confidence            36899999999999999999999999999999998           7999999999995  599999999853    488


Q ss_pred             EE--------------EEeeeCCCCceEEEEEEEEEEEeeccccEEEeecCCCC-CCCCC-CCCCCCeEEeEEEEEEEEE
Q 036907           78 NA--------------RTKIDKGRGGNIENITIRYIKMERVKIPIRIGRGSNSH-PDEGR-DPKALPKIRGISFVNVVSV  141 (209)
Q Consensus        78 nV--------------rIKt~~g~gG~v~nI~f~nI~m~~v~~pI~i~~~y~~~-~~~~~-~~~~~~~I~nIt~~nI~gt  141 (209)
                      ||              |||||+|++|+|+||+|+||+|+++++||.|+|+|++. +...+ .+...++|+||+|+||+||
T Consensus       251 NV~v~n~~~~~T~nGvRIKT~~Gg~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~NI~GT  330 (456)
T PLN03003        251 NVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIGT  330 (456)
T ss_pred             EEEEEeeEEECCCcEEEEEEeCCCCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEEEEeEEEE
Confidence            88              99999999999999999999999999999999999853 22212 2345689999999999999


Q ss_pred             ccCC-CeEEEEE------------EEeCC-------CCcceEEeEEeecceee-CCCCCCCCCC
Q 036907          142 NTIK-APVRAGI------------IVLAP-------SVKWQSQFVSGFNSQVF-PLPCPQLQNK  184 (209)
Q Consensus       142 ~~~~-a~~l~g~------------i~~~~-------~~~~~c~nv~g~~~~v~-P~~C~~~~~~  184 (209)
                      .+.. ++.|.|.            +.+..       ...|+|+||+|.+..+. |+||+++.+.
T Consensus       331 s~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~~~~~~~C~~~~~~  394 (456)
T PLN03003        331 SKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECLELSTD  394 (456)
T ss_pred             eCccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccCceECCCCccccCCC
Confidence            8764 7888765            22221       24699999999554454 4589998776

>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query209
3jur_A448 The Crystal Structure Of A Hyperthermoactive Exopol 2e-05
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure 
Iteration: 1

 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 15/93 (16%)
Query: 17  VCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMR-RVSGTTPTYSGVGIGSEMSGG 75
           + IE C  ++G+D V +K G +  G  +  PS  I +R  +  +  ++ G+ IGSEMSGG
Sbjct: 249 MLIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGG 308
Query: 76  IFNA--------------RTKIDKGRGGNIENI 94
           + N               R K +  RGG +ENI
Sbjct: 309 VRNVVARNNVYMNVERALRLKTNSRRGGYMENI 341

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query209
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 3e-29
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 3e-28
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 9e-24
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 1e-14
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 1e-14
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 2e-13
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 8e-12
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 1e-11
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 2e-11
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 6e-11
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 1e-06
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 1e-06
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 3e-04
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
 Score =  111 bits (280), Expect = 3e-29
 Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 21/157 (13%)

Query: 12  DLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRR-VSGTTPTYSGVGIGS 70
           +    + IE C  ++G+D V +K G +  G  +  PS  I +R  +  +  ++ G+ IGS
Sbjct: 244 ESCKYMLIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGS 303

Query: 71  EMSGGIFN--------------ARTKIDKGRGGNIENITIRYIKMERV-KIPIRIGRGSN 115
           EMSGG+ N               R K +  RGG +ENI         V +  IRI     
Sbjct: 304 EMSGGVRNVVARNNVYMNVERALRLKTNSRRGGYMENIFFIDNVAVNVSEEVIRIN---- 359

Query: 116 SHPDEGRDPKALPKIRGISFVNVVSVNTIKAPVRAGI 152
               +  + + LP +R +   N+ +     A    G+
Sbjct: 360 -LRYDNEEGEYLPVVRSVFVKNLKATGGKYAVRIEGL 395
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query209
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.98
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.97
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.9
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.84
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.81
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.67
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.6
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.59
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.44
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.4
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.39
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.38
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.32
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.28
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.28
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.25
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 99.16
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.15
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.11
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.07
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 98.65
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 98.63
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 98.35
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 98.34
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 97.89
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 97.87
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 97.64
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 96.79
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.62
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.5
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 95.97
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 95.89
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 95.84
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 95.83
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 95.62
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 95.52
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 95.01
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 94.57
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 94.2
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 93.6
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 92.89
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 92.88
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 92.77
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 92.45
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 92.39
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 92.0
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 91.56
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 90.92
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 89.49
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 89.16
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 86.66
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 84.79
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 82.91
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 82.54
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
Probab=100.00  E-value=1.3e-35  Score=267.39  Aligned_cols=151  Identities=26%  Similarity=0.318  Sum_probs=130.8

Q ss_pred             CCCCceeeecCcccEEEEeeEEEcCCceEEEccCCCcCCcccCCceeeEEEEeEEEeCCCCCeEEEccccCCCEEEE---
Q 036907            3 EKMKRKHYTDLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSEMSGGIFNA---   79 (209)
Q Consensus         3 ~~NtDGIdi~~s~nV~I~nc~I~tgDDcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~~~~~~GIsIGSe~~g~i~nV---   79 (209)
                      +.||||||+++|+||+|+||+|++|||||+||++..      ..|++||+|+||+|++  +|||+||||+. +|+||   
T Consensus       198 ~~NtDGid~~~s~nV~I~n~~i~~gDDcIaiks~~~------~~~s~nI~I~n~~~~~--ghGisiGSe~~-~v~nV~v~  268 (376)
T 1bhe_A          198 ARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKG------RAETRNISILHNDFGT--GHGMSIGSETM-GVYNVTVD  268 (376)
T ss_dssp             CSSCCSEEEESCEEEEEESCEEECSSCSEEEEECTT------SCCEEEEEEEEEEECS--SSCEEEEEEES-SEEEEEEE
T ss_pred             CCCCceEeecCCceEEEEeCEEecCCCeEEEcccCC------CCCceEEEEEeeEEEc--cccEEeccCCc-cEeeEEEE
Confidence            479999999999999999999999999999998521      2479999999999996  59999999988 88888   


Q ss_pred             -----------EEeeeCCCCceEEEEEEEEEEEeeccccEEEeecCCCCCCCCCCCCCCCeEEeEEEEEEEEEccCCCeE
Q 036907           80 -----------RTKIDKGRGGNIENITIRYIKMERVKIPIRIGRGSNSHPDEGRDPKALPKIRGISFVNVVSVNTIKAPV  148 (209)
Q Consensus        80 -----------rIKt~~g~gG~v~nI~f~nI~m~~v~~pI~i~~~y~~~~~~~~~~~~~~~I~nIt~~nI~gt~~~~a~~  148 (209)
                                 |||||+|++|+|+||+|+||+|+++++||.|+|+|+.+.     ....|.|+||+|+||+++++. ++.
T Consensus       269 n~~~~~t~~GirIKt~~g~~G~v~ni~f~ni~~~~v~~~i~i~~~y~~~~-----~~~~~~i~ni~~~ni~gt~~~-~~~  342 (376)
T 1bhe_A          269 DLKMNGTTNGLRIKSDKSAAGVVNGVRYSNVVMKNVAKPIVIDTVYEKKE-----GSNVPDWSDITFKDVTSETKG-VVV  342 (376)
T ss_dssp             EEEEESCSEEEEEECCTTTCCEEEEEEEEEEEEESCSEEEEEETTSSCCC-----CCCCCEEEEEEEEEEEECSCC-EEE
T ss_pred             eeEEeCCCcEEEEEEecCCCceEeeEEEEeEEEeCCCceEEEEeeccCCC-----CCcCcEEEEEEEEEEEEEecc-eEE
Confidence                       999999999999999999999999999999999997642     234679999999999999764 567


Q ss_pred             EEEE------------EEeCCCCcceEEeEEe
Q 036907          149 RAGI------------IVLAPSVKWQSQFVSG  168 (209)
Q Consensus       149 l~g~------------i~~~~~~~~~c~nv~g  168 (209)
                      |.|.            +.+.....|+|+||+.
T Consensus       343 l~g~~~~~~~~I~l~nv~l~~~~~~~~~~~~~  374 (376)
T 1bhe_A          343 LNGENAKKPIEVTMKNVKLTSDSTWQIKNVNV  374 (376)
T ss_dssp             EECTTCSSCEEEEEEEEECCTTCEEEEESEEE
T ss_pred             EEeCCCCCeeeEEEEeEEEecCCCceEEEEEe
Confidence            7764            3344457799999974
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 209
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 2e-09
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 1e-08
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 1e-08
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 1e-08
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 1e-08
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 7e-08
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 6e-07
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 7e-05
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]

 Score = 54.4 bits (130), Expect = 2e-09
 Identities = 33/147 (22%), Positives = 53/147 (36%), Gaps = 28/147 (19%)

Query: 10  YTDLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIG 69
               S N+ I    I +G+D VA+K             + NI++        T  G+ IG
Sbjct: 205 DPMSSKNITIAYSNIATGDDNVAIKAYKGR------AETRNISILHN--DFGTGHGMSIG 256

Query: 70  SEMSGGIFN--------------ARTKIDKGRGGNIENITIRYIKMERVKIPIRIGRGSN 115
              + G++N               R K DK   G +  +    + M+ V  PI I     
Sbjct: 257 -SETMGVYNVTVDDLKMNGTTNGLRIKSDKSAAGVVNGVRYSNVVMKNVAKPIVI----- 310

Query: 116 SHPDEGRDPKALPKIRGISFVNVVSVN 142
               E ++   +P    I+F +V S  
Sbjct: 311 DTVYEKKEGSNVPDWSDITFKDVTSET 337
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query209
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.98
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.97
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.84
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.12
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.11
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.06
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.03
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 98.9
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.88
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 98.85
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 98.17
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 96.56
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.35
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 92.43
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 92.36
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 91.31
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 91.08
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 90.74
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 90.64
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 88.65
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 87.8
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 87.18
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 86.73
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 86.61
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 82.07
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

Probab=100.00  E-value=3.1e-34  Score=253.69  Aligned_cols=161  Identities=19%  Similarity=0.215  Sum_probs=126.6

Q ss_pred             CCCCceeeecCcccEEEEeeEEEcCCceEEEccCCCcCCcccCCceeeEEEEeEEEeCCCCCeEEEc---cccCCCEEEE
Q 036907            3 EKMKRKHYTDLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIG---SEMSGGIFNA   79 (209)
Q Consensus         3 ~~NtDGIdi~~s~nV~I~nc~I~tgDDcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~~~~~~GIsIG---Se~~g~i~nV   79 (209)
                      +.||||||+++|+||+|+||+|++|||||+||++            +||+|+||+|+.+  ||++||   +++.+.|+||
T Consensus       155 ~~NtDGidi~~s~nV~I~n~~i~~gDDcIaiks~------------~ni~i~n~~c~~g--hG~sigslG~~~~~~v~nV  220 (339)
T d1ia5a_         155 GHNTDAFDIGTSTYVTISGATVYNQDDCVAVNSG------------ENIYFSGGYCSGG--HGLSIGSVGGRSDNTVKNV  220 (339)
T ss_dssp             CCSCCSEEEESCEEEEEESCEEECSSCSEEESSE------------EEEEEESCEEESS--SCEEEEEECSSSCCEEEEE
T ss_pred             CCCCCccccCCCCeEEEeeeEEEcCCCeEEecCc------------cEEEEEEeEEecc--ccceecccccCccccEEEE
Confidence            5799999999999999999999999999999985            8999999999964  998875   4667788888


Q ss_pred             --------------EEeeeCCCCceEEEEEEEEEEEeec-cccEEEeecCCCCCCCCCCCCCCCeEEeEEEEEEEEEccC
Q 036907           80 --------------RTKIDKGRGGNIENITIRYIKMERV-KIPIRIGRGSNSHPDEGRDPKALPKIRGISFVNVVSVNTI  144 (209)
Q Consensus        80 --------------rIKt~~g~gG~v~nI~f~nI~m~~v-~~pI~i~~~y~~~~~~~~~~~~~~~I~nIt~~nI~gt~~~  144 (209)
                                    |||||+|++|+|+||+||||+|++| ++||.|+|+|++...   .+...++|+||+|+||+|+.+.
T Consensus       221 ~v~n~~~~~t~~GirIKt~~g~~G~v~nV~f~ni~~~~v~~~pI~I~~~Y~~~~~---~~~~~v~i~nI~~~Ni~gt~~~  297 (339)
T d1ia5a_         221 TFVDSTIINSDNGVRIKTNIDTTGSVSDVTYKDITLTSIAKYGIVVQQNYGDTSS---TPTTGVPITDFVLDNVHGSVVS  297 (339)
T ss_dssp             EEEEEEEESCSEEEEEEEETTCCCEEEEEEEEEEEEEEESSEEEEEEEEETCTTS---CCCSSSCEEEEEEEEEEEEECT
T ss_pred             EEECCcccCCcceeEEeeeCCCCEEEEEEEEEEEEEeccccccEEEEeecCCCCC---CCCCCcEEEeEEEEeEEEEecc
Confidence                          9999999999999999999999999 579999999975322   2345668999999999999876


Q ss_pred             C-CeEEEEEEEeCCCCcceEEeEEeecceeeCCCCCCCC
Q 036907          145 K-APVRAGIIVLAPSVKWQSQFVSGFNSQVFPLPCPQLQ  182 (209)
Q Consensus       145 ~-a~~l~g~i~~~~~~~~~c~nv~g~~~~v~P~~C~~~~  182 (209)
                      . +..+.+. .-.....+..+|+. ..+...+..|.++|
T Consensus       298 ~~~~~~~~~-~~~p~~ni~~~nV~-itg~~~~~~C~nv~  334 (339)
T d1ia5a_         298 SGTNILISC-GSGSCSDWTWTDVS-VSGGKTSSKCTNVP  334 (339)
T ss_dssp             TSEEEEEEC-CTTCEEEEEEEEEE-EESSBCCSCCBSCC
T ss_pred             cCceEEEeC-CCCCEeceEEEeEE-EcCCCcceEeECCC
Confidence            5 4455431 00011234455555 23444455677765
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure