Citrus Sinensis ID: 036922

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-----
Protein Sequence
MREEELPPCESSITSRVLSFLQGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQSGSESSLETAWRAESESLKSILTGAPQSKLGRIALVDALAQQIRKRMKVRVPNVLSGY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEEEEEEHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHcccHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccHccccHHHHHHHHHHHHHccccEEEEEEHHccccccHHHHHHHHHHHHcccccccccccEEEEEcccEEEHEccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcHHHcccc
Coil and Loop (DISEMBL)
mreeelppcessiTSRVLSFLQGTRTVGVISKIDQASADQKALAAVQALLLnqgppktadiSWVALIGQSVSIAtaqsgsesslETAWRAESESLKSIltgapqsklGRIALVDALAQQIRKRMKvrvpnvlsgy
Flexible Loop (DISEMBL)
mreeelppcessiTSRVLSFLQGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQSGSESSLETAWRAESESLKSIltgapqsklgRIALVDALAQQIrkrmkvrvpnvlsgy
Low Complexity Region (SEG)
MREEELPPCESSITSRVLSFLQGTRTVGVISKIDqasadqkalaavqalllnqGPPKTADISWVALIGQSVSIATAQSGSESSLETAWRAESESLKSILTGAPQSKLGRIALVDALAQQIRKRMKVRVPNVLSGY
Disordered region (IsUnstruct)
***************RVLSFLQGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSI*********************************LGRIALVDALAQQIR**************
Disordered Region (DISOPRED)
****************VLSFLQGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQS*******************AESESLKSILTGAPQSKLGRIALVDALAQQIRKRMKVRVPNVLS**
Disordered Region (DISEMBL)
*************TSRVLSFLQGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSI*******************ESLKSILTGAPQSKLGRIALVDALAQQIRKRMKVRVPNVLSGY
Disordered Region (DISPRO)
******PPCESSITSRVLSFLQGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQ**SESSLETAWRAESESLKSILTGAPQSKLGRIALVDALAQQIRKRMKVRVPNVLSGY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MREEELPPCESSITSRVLSFLQGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQSGSESSLETAWRAESESLKSILTGAPQSKLGRIALVDALAQQIRKRMKVRVPNVLSGY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	135	2.2.26 [Sep-21-2011]
Q9LQ55	920	Dynamin-2B OS=Arabidopsis	yes	no	0.837	0.122	0.815	5e-46
Q9SE83	914	Dynamin-2A OS=Arabidopsis	no	no	0.837	0.123	0.807	3e-45

>sp|Q9LQ55|DRP2B_ARATH Dynamin-2B OS=Arabidopsis thaliana GN=DRP2B PE=1 SV=2

 Score =  182 bits (463), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 93/114 (81%), Positives = 104/114 (91%), Gaps = 1/114 (0%)

Query: 22  QGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQSG-S 80
           + TRTVG+ISKIDQA+ + K+LAAVQALL NQGPPKT DI WVALIGQSVSIA+AQSG S
Sbjct: 195 ESTRTVGIISKIDQAAENPKSLAAVQALLSNQGPPKTTDIPWVALIGQSVSIASAQSGGS 254

Query: 81  ESSLETAWRAESESLKSILTGAPQSKLGRIALVDALAQQIRKRMKVRVPNVLSG 134
           E+SLETAWRAESESLKSILTGAPQSKLGRIALVD LA QIR RMK+R+PN+L+G
Sbjct: 255 ENSLETAWRAESESLKSILTGAPQSKLGRIALVDTLASQIRSRMKLRLPNILTG 308

Putative microtubule-associated force-producing protein, able to bind and hydrolyze GTP.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 5EC: .EC: 5

>sp|Q9SE83|DRP2A_ARATH Dynamin-2A OS=Arabidopsis thaliana GN=DRP2A PE=1 SV=2

 Score =  179 bits (455), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 92/114 (80%), Positives = 103/114 (90%), Gaps = 1/114 (0%)

Query: 22  QGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQSGS- 80
           + TRT+G+I KIDQA+ + KALAAVQALL NQGPPKT DI WVA+IGQSVSIA+AQSGS 
Sbjct: 195 ESTRTIGIIGKIDQAAENSKALAAVQALLSNQGPPKTTDIPWVAVIGQSVSIASAQSGSG 254

Query: 81  ESSLETAWRAESESLKSILTGAPQSKLGRIALVDALAQQIRKRMKVRVPNVLSG 134
           E+SLETAWRAESESLKSILTGAPQSKLGRIALVD LA QIR RMK+R+P+VLSG
Sbjct: 255 ENSLETAWRAESESLKSILTGAPQSKLGRIALVDTLASQIRSRMKLRLPSVLSG 308

Microtubule-associated force-producing protein involved in clathrin-mediated vesicle trafficking from the trans-Golgi network to the central vacuole. Able to bind and hydrolyze GTP. Binds specifically to phosphatidylinositol 3-phosphate (PtdIns3P).

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
449442106	920	PREDICTED: dynamin-2B-like [Cucumis sati	0.837	0.122	0.827	1e-47
449525041	628	PREDICTED: dynamin-2B-like, partial [Cuc	0.837	0.179	0.827	2e-47
51477379	921	DRP [Cucumis melo]	0.829	0.121	0.852	2e-47
449447543	928	PREDICTED: dynamin-2B-like [Cucumis sati	0.829	0.120	0.843	6e-47
356544224	922	PREDICTED: dynamin-2B-like [Glycine max]	0.896	0.131	0.759	6e-46
225460010	931	PREDICTED: dynamin-2B [Vitis vinifera] g	0.829	0.120	0.843	7e-46
357470181	922	Dynamin-2B [Medicago truncatula] gi|3555	0.837	0.122	0.836	2e-45
224127734	920	predicted protein [Populus trichocarpa]	0.837	0.122	0.902	3e-45
8778745	1092	T30E16.17 [Arabidopsis thaliana]	0.859	0.106	0.811	3e-45
255564946	823	Dynamin-2A, putative [Ricinus communis]	0.837	0.137	0.893	7e-45

>gi|449442106|ref|XP_004138823.1| PREDICTED: dynamin-2B-like [Cucumis sativus]

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 96/116 (82%), Positives = 109/116 (93%), Gaps = 3/116 (2%)

Query: 22  QGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQS--- 78
           +GTRT+G+ISKIDQA++DQK+LAAVQALLLNQGPP+ +DI W+ALIGQSVSIATAQS   
Sbjct: 202 EGTRTIGIISKIDQAASDQKSLAAVQALLLNQGPPRASDIPWIALIGQSVSIATAQSGSV 261

Query: 79  GSESSLETAWRAESESLKSILTGAPQSKLGRIALVDALAQQIRKRMKVRVPNVLSG 134
           GSE+SLETAWRAESESLKSILTGAPQSKLGRIALVDALA QI+ RMKVR+PN+LSG
Sbjct: 262 GSENSLETAWRAESESLKSILTGAPQSKLGRIALVDALAHQIQNRMKVRLPNLLSG 317

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449525041|ref|XP_004169529.1| PREDICTED: dynamin-2B-like, partial [Cucumis sativus]

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 96/116 (82%), Positives = 109/116 (93%), Gaps = 3/116 (2%)

Query: 22  QGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQS--- 78
           +GTRT+G+ISKIDQA++DQK+LAAVQALLLNQGPP+ +DI W+ALIGQSVSIATAQS   
Sbjct: 202 EGTRTIGIISKIDQAASDQKSLAAVQALLLNQGPPRASDIPWIALIGQSVSIATAQSGSV 261

Query: 79  GSESSLETAWRAESESLKSILTGAPQSKLGRIALVDALAQQIRKRMKVRVPNVLSG 134
           GSE+SLETAWRAESESLKSILTGAPQSKLGRIALVDALA QI+ RMKVR+PN+LSG
Sbjct: 262 GSENSLETAWRAESESLKSILTGAPQSKLGRIALVDALAHQIQNRMKVRLPNLLSG 317

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51477379|gb|AAU04752.1| DRP [Cucumis melo]

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 98/115 (85%), Positives = 109/115 (94%), Gaps = 3/115 (2%)

Query: 23  GTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQSGS-- 80
           GTRT+GVISKIDQAS+DQK+LAAVQALLLNQGP + +DI WVALIGQSVSIATAQSGS  
Sbjct: 200 GTRTIGVISKIDQASSDQKSLAAVQALLLNQGPARASDIPWVALIGQSVSIATAQSGSVG 259

Query: 81  -ESSLETAWRAESESLKSILTGAPQSKLGRIALVDALAQQIRKRMKVRVPNVLSG 134
            E+S+ETAWRAESESLKSILTGAPQSKLGR+ALVDAL+QQIRKRMKVR+PN+LSG
Sbjct: 260 SENSMETAWRAESESLKSILTGAPQSKLGRLALVDALSQQIRKRMKVRLPNLLSG 314

Source: Cucumis melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447543|ref|XP_004141527.1| PREDICTED: dynamin-2B-like [Cucumis sativus] gi|449481470|ref|XP_004156193.1| PREDICTED: dynamin-2B-like [Cucumis sativus]

 Score =  192 bits (487), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 97/115 (84%), Positives = 109/115 (94%), Gaps = 3/115 (2%)

Query: 23  GTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQS---G 79
           GTRT+GVISKIDQAS+DQK+LAAVQALLLNQGP + +DI WVALIGQSVSIATAQS   G
Sbjct: 203 GTRTIGVISKIDQASSDQKSLAAVQALLLNQGPARASDIPWVALIGQSVSIATAQSGSVG 262

Query: 80  SESSLETAWRAESESLKSILTGAPQSKLGRIALVDALAQQIRKRMKVRVPNVLSG 134
           SE+S+ETAWRAESESLKSIL+GAPQSKLGR+ALVDAL+QQIRKRMKVR+PN+LSG
Sbjct: 263 SENSMETAWRAESESLKSILSGAPQSKLGRLALVDALSQQIRKRMKVRLPNLLSG 317

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544224|ref|XP_003540554.1| PREDICTED: dynamin-2B-like [Glycine max]

 Score =  188 bits (478), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 98/129 (75%), Positives = 112/129 (86%), Gaps = 8/129 (6%)

Query: 14  TSRVLSFL-----QGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIG 68
           +SR L +      +GTRT+G+ISKIDQA++DQKALA VQALLLNQGP KT+DI W+ALIG
Sbjct: 182 SSRALKYAKEYDGEGTRTIGIISKIDQAASDQKALAGVQALLLNQGPAKTSDIPWIALIG 241

Query: 69  QSVSIATAQS---GSESSLETAWRAESESLKSILTGAPQSKLGRIALVDALAQQIRKRMK 125
           QSVSIATAQS   GSE+SLETAWRAESESLKSILTGAP SKLGRIALVDALA QI+ RMK
Sbjct: 242 QSVSIATAQSGSAGSENSLETAWRAESESLKSILTGAPPSKLGRIALVDALAHQIQNRMK 301

Query: 126 VRVPNVLSG 134
           +R+PN+LSG
Sbjct: 302 LRLPNLLSG 310

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460010|ref|XP_002271285.1| PREDICTED: dynamin-2B [Vitis vinifera] gi|297734796|emb|CBI17030.3| unnamed protein product [Vitis vinifera]

 Score =  188 bits (477), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 97/115 (84%), Positives = 107/115 (93%), Gaps = 3/115 (2%)

Query: 23  GTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQSGS-- 80
           GTRT+GVISKIDQA++DQK LAAVQALLLNQGP  T+++ WVALIGQSVSIA+AQSGS  
Sbjct: 199 GTRTIGVISKIDQAASDQKILAAVQALLLNQGPRSTSEMPWVALIGQSVSIASAQSGSVG 258

Query: 81  -ESSLETAWRAESESLKSILTGAPQSKLGRIALVDALAQQIRKRMKVRVPNVLSG 134
            E+SLETAWRAESESLKSILTGAPQSKLGRIALVDALAQQIR RMKVR+PN+LSG
Sbjct: 259 SENSLETAWRAESESLKSILTGAPQSKLGRIALVDALAQQIRSRMKVRLPNLLSG 313

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357470181|ref|XP_003605375.1| Dynamin-2B [Medicago truncatula] gi|355506430|gb|AES87572.1| Dynamin-2B [Medicago truncatula]

 Score =  186 bits (472), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 97/116 (83%), Positives = 106/116 (91%), Gaps = 3/116 (2%)

Query: 22  QGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQSGS- 80
           +GTR VGVISKIDQA++DQKA+AAVQALLLN+GP K  DI WVALIGQSVSIATAQSGS 
Sbjct: 196 EGTRIVGVISKIDQAASDQKAIAAVQALLLNKGPTKAQDIPWVALIGQSVSIATAQSGSS 255

Query: 81  --ESSLETAWRAESESLKSILTGAPQSKLGRIALVDALAQQIRKRMKVRVPNVLSG 134
             E+SLETAWRAESESLKSILTGAP SKLGRIALVDALAQQI+ RMK+RVPN+LSG
Sbjct: 256 GSENSLETAWRAESESLKSILTGAPPSKLGRIALVDALAQQIQNRMKLRVPNLLSG 311

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127734|ref|XP_002329164.1| predicted protein [Populus trichocarpa] gi|222870945|gb|EEF08076.1| predicted protein [Populus trichocarpa]

 Score =  186 bits (472), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 102/113 (90%), Positives = 110/113 (97%)

Query: 22  QGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQSGSE 81
           +GTRTVGVISKIDQA+ DQKALAAVQALLLNQGPPKT DI W+ALIGQSVSIA+AQSGSE
Sbjct: 196 EGTRTVGVISKIDQAATDQKALAAVQALLLNQGPPKTTDIPWIALIGQSVSIASAQSGSE 255

Query: 82  SSLETAWRAESESLKSILTGAPQSKLGRIALVDALAQQIRKRMKVRVPNVLSG 134
           SSLETAW+AESESLK+ILTGAPQSKLGRIAL+DALAQQIRKRMKVR+PNVLSG
Sbjct: 256 SSLETAWKAESESLKTILTGAPQSKLGRIALLDALAQQIRKRMKVRLPNVLSG 308

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8778745|gb|AAF79753.1|AC009317_12 T30E16.17 [Arabidopsis thaliana]

 Score =  186 bits (472), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 95/117 (81%), Positives = 105/117 (89%), Gaps = 1/117 (0%)

Query: 19  SFLQGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQS 78
           S   GTRTVG+ISKIDQA+ + K+LAAVQALL NQGPPKT DI WVALIGQSVSIA+AQS
Sbjct: 298 SLFIGTRTVGIISKIDQAAENPKSLAAVQALLSNQGPPKTTDIPWVALIGQSVSIASAQS 357

Query: 79  G-SESSLETAWRAESESLKSILTGAPQSKLGRIALVDALAQQIRKRMKVRVPNVLSG 134
           G SE+SLETAWRAESESLKSILTGAPQSKLGRIALVD LA QIR RMK+R+PN+L+G
Sbjct: 358 GGSENSLETAWRAESESLKSILTGAPQSKLGRIALVDTLASQIRSRMKLRLPNILTG 414

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564946|ref|XP_002523466.1| Dynamin-2A, putative [Ricinus communis] gi|223537294|gb|EEF38925.1| Dynamin-2A, putative [Ricinus communis]

 Score =  184 bits (468), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 101/113 (89%), Positives = 111/113 (98%)

Query: 22  QGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQSGSE 81
           +GTRT+GVISKIDQA +DQKALAAVQALLLNQGPPKTADI W+ALIGQSV+IA+AQSGSE
Sbjct: 197 EGTRTIGVISKIDQAVSDQKALAAVQALLLNQGPPKTADIPWIALIGQSVAIASAQSGSE 256

Query: 82  SSLETAWRAESESLKSILTGAPQSKLGRIALVDALAQQIRKRMKVRVPNVLSG 134
           +SLETAWRAESESLKSILTGAPQSKLGRIALVDALAQQIRKR+KVR+PN+LSG
Sbjct: 257 NSLETAWRAESESLKSILTGAPQSKLGRIALVDALAQQIRKRVKVRLPNLLSG 309

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
TAIR|locus:2202847	920	DL3 "dynamin-like 3" [Arabidop	0.837	0.122	0.701	2.3e-34
TAIR|locus:2012763	914	ADL6 "dynamin-like protein 6"	0.837	0.123	0.684	1.3e-33

TAIR|locus:2202847 DL3 "dynamin-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 2.3e-34, P = 2.3e-34
 Identities = 80/114 (70%), Positives = 88/114 (77%)

Query:    22 QGTRTVGVISKIDXXXXXXXXXXXXXXXXXXXGPPKTADISWVALIGQSVSIATAQSG-S 80
             + TRTVG+ISKID                   GPPKT DI WVALIGQSVSIA+AQSG S
Sbjct:   195 ESTRTVGIISKIDQAAENPKSLAAVQALLSNQGPPKTTDIPWVALIGQSVSIASAQSGGS 254

Query:    81 ESSLETAWRAESESLKSILTGAPQSKLGRIALVDALAQQIRKRMKVRVPNVLSG 134
             E+SLETAWRAESESLKSILTGAPQSKLGRIALVD LA QIR RMK+R+PN+L+G
Sbjct:   255 ENSLETAWRAESESLKSILTGAPQSKLGRIALVDTLASQIRSRMKLRLPNILTG 308

GO:0003924 "GTPase activity" evidence=IEA;ISS

GO:0005525 "GTP binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0030276 "clathrin binding" evidence=IDA

GO:0045334 "clathrin-coated endocytic vesicle" evidence=IDA

GO:0072583 "clathrin-mediated endocytosis" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2012763 ADL6 "dynamin-like protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 376 (137.4 bits), Expect = 1.3e-33, P = 1.3e-33
 Identities = 78/114 (68%), Positives = 87/114 (76%)

Query:    22 QGTRTVGVISKIDXXXXXXXXXXXXXXXXXXXGPPKTADISWVALIGQSVSIATAQSGS- 80
             + TRT+G+I KID                   GPPKT DI WVA+IGQSVSIA+AQSGS 
Sbjct:   195 ESTRTIGIIGKIDQAAENSKALAAVQALLSNQGPPKTTDIPWVAVIGQSVSIASAQSGSG 254

Query:    81 ESSLETAWRAESESLKSILTGAPQSKLGRIALVDALAQQIRKRMKVRVPNVLSG 134
             E+SLETAWRAESESLKSILTGAPQSKLGRIALVD LA QIR RMK+R+P+VLSG
Sbjct:   255 ENSLETAWRAESESLKSILTGAPQSKLGRIALVDTLASQIRSRMKLRLPSVLSG 308


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.127   0.346    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      135       116   0.00091  102 3  11 23  0.38    31
                                                     29  0.45    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  483 (51 KB)
  Total size of DFA:  96 KB (2071 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.17u 0.12s 10.29t   Elapsed:  00:00:01
  Total cpu time:  10.17u 0.12s 10.29t   Elapsed:  00:00:01
  Start:  Mon May 20 19:30:51 2013   End:  Mon May 20 19:30:52 2013

GO:0003924 "GTPase activity" evidence=IEA;ISS

GO:0005525 "GTP binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006896 "Golgi to vacuole transport" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LQ55	DRP2B_ARATH	3, ., 6, ., 5, ., 5	0.8157	0.8370	0.1228	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	135
cd08771	278	cd08771, DLP_1, Dynamin_like protein family includ	2e-08

>gnl|CDD|206738 cd08771, DLP_1, Dynamin_like protein family includes dynamins and Mx proteins

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 9/110 (8%)

Query: 22  QGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQSGSE 81
           +G RT+GV++K+D          A   LLL QG      + +V ++ +S         S 
Sbjct: 176 EGERTIGVLTKLDLM---DPGTDAEDILLLLQGKVIPLKLGYVGVVNRSQKDI----DSG 228

Query: 82  SSLETAWRAESESLKSILTG--APQSKLGRIALVDALAQQIRKRMKVRVP 129
            S+E A  AE E  ++       P S++G  AL   L++ ++K ++  +P
Sbjct: 229 KSIEEALEAEEEFFETHPWYKLLPASRVGTPALRKRLSKLLQKHIRESLP 278

The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes interferon-induced Mx proteins that inhibit a wide range of viruses by blocking an early stage of the replication cycle. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 278

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	135
KOG0446	657	consensus Vacuolar sorting protein VPS1, dynamin,	99.94
PF01031	295	Dynamin_M: Dynamin central region; InterPro: IPR00	99.61
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.19
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	95.14
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	94.96
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	89.09
COG0699	546	Predicted GTPases (dynamin-related) [General funct	81.25

>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=99.94  E-value=6e-28  Score=217.20  Aligned_cols=120  Identities=23%  Similarity=0.278  Sum_probs=113.7

Q ss_pred             CCCCCCCcccccccccc-----cCceeeeeeehhhccccchhHHHHHHHHHHhCCCCCCCCCceEEEeccceehhhcccC
Q 036922            5 ELPPCESSITSRVLSFL-----QGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQSG   79 (135)
Q Consensus         5 ~~Pan~diatS~alkla-----~g~RTiGVitKiD~~~~~t~alaAv~alL~~qG~~~~~~~pWVavInrSq~ia~Adin   79 (135)
                      -.|||.|++||+|||+|     +|.||||||||+|+||+||+   |++. |+  |+.++++.|||++|||+|    .+|+
T Consensus       176 v~~an~d~ats~alkiarevDp~g~RTigvitK~DlmdkGt~---~~~~-L~--g~~~~l~~g~v~vvnR~q----~di~  245 (657)
T KOG0446|consen  176 VTPANSDIATSPALVVAREVDPGGSRTLEVITKFDFMDKGTN---AVTR-LV--GRPITLKVGYVGVVNRSQ----SIID  245 (657)
T ss_pred             ccchhhhhhcCHHHHHHHhhCCCccchhHHhhhHHhhhcCCc---ceee-ec--CCccccccceeeeeccch----hhhh
Confidence            46999999999999999     89999999999999999999   7777 54  999999999999999999    8998


Q ss_pred             CCCcHHHHHHHHHHHHhhhh-cCCcccchhHHHHHHHHHHHHHHHHHhhccccccC
Q 036922           80 SESSLETAWRAESESLKSIL-TGAPQSKLGRIALVDALAQQIRKRMKVRVPNVLSG  134 (135)
Q Consensus        80 se~~m~tArr~E~E~f~s~~-~g~~~sklG~~~L~~~Lsk~i~~~ik~RlP~ilsg  134 (135)
                      ...+|.+|..+|+.||.+.| |++...++|+.+|++.|.++|...|+.++|.|.+.
T Consensus       246 ~~k~~~~al~~e~~~f~~~p~y~~~~~~~g~p~La~~L~~~l~~hi~~~lP~l~~~  301 (657)
T KOG0446|consen  246 FKKSILEALNDEVPSFESVPSYPILLTISGVPYLALLLPGYLQSHIRDQLPELKTK  301 (657)
T ss_pred             hhhhHHHHHHhhhhhhhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHH
Confidence            77799999999999999999 99999999999999999999999999999998753

>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles

Probab=99.61  E-value=4.8e-16  Score=124.15  Aligned_cols=82  Identities=20%  Similarity=0.275  Sum_probs=70.9

Q ss_pred             HHHHHHHhCCCCCCCCCceEEEeccceehhhcccCCCCcHHHHHHHHHHHHhhhh-cCCcccchhHHHHHHHHHHHHHHH
Q 036922           45 AVQALLLNQGPPKTADISWVALIGQSVSIATAQSGSESSLETAWRAESESLKSIL-TGAPQSKLGRIALVDALAQQIRKR  123 (135)
Q Consensus        45 Av~alL~~qG~~~~~~~pWVavInrSq~ia~Adinse~~m~tArr~E~E~f~s~~-~g~~~sklG~~~L~~~Lsk~i~~~  123 (135)
                      |+++ |.  |..+.++++||||+||||    .|++...|++.|+++|.+||++.| |..+++++|+.+|++.|++.|...
T Consensus         1 ~~~i-L~--n~~~pLklGy~~V~nrsq----~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~   73 (295)
T PF01031_consen    1 AMDI-LR--NKVIPLKLGYVGVKNRSQ----QDINDGKSIEEARQKEKEFFSNHPWYSSPADRCGTPALRKRLSELLVEH   73 (295)
T ss_dssp             SHHH-HT--TSSS--TT-EEEE--S-H----HHHHTTEEHHHHHHHHHHHHHHSTTTGGGGGGSSHHHHHHHHHHHHHHH
T ss_pred             ChHH-hC--CCeeccCCCeEEEecCCc----cccccCCCHHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHHHH
Confidence            4566 64  999999999999999999    999999999999999999999998 888999999999999999999999


Q ss_pred             HHhhcccccc
Q 036922          124 MKVRVPNVLS  133 (135)
Q Consensus       124 ik~RlP~ils  133 (135)
                      |+..||.|.+
T Consensus        74 I~~~LP~l~~   83 (295)
T PF01031_consen   74 IRKSLPSLKS   83 (295)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHhCcHHHH
Confidence            9999999864

At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....

>smart00053 DYNc Dynamin, GTPase

Probab=99.19  E-value=1.2e-11  Score=99.78  Aligned_cols=65  Identities=23%  Similarity=0.307  Sum_probs=58.4

Q ss_pred             CCCCCCcccccccccc-----cCceeeeeeehhhccccchhHHHHHHHHHHhCCCCCCCCCceEEEeccceehhhcccCC
Q 036922            6 LPPCESSITSRVLSFL-----QGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQSGS   80 (135)
Q Consensus         6 ~Pan~diatS~alkla-----~g~RTiGVitKiD~~~~~t~alaAv~alL~~qG~~~~~~~pWVavInrSq~ia~Adins   80 (135)
                      .+++.|+++++++++|     .|.|||||+||+|..+.+++   +++. |.  |..+.++++|++|.||||    +|++.
T Consensus       170 vda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~~~~---~~~~-~~--~~~~~l~~g~~~v~nr~~----~d~~~  239 (240)
T smart00053      170 TPANVDLANSDALKLAKEVDPQGERTIGVITKLDLMDEGTD---ARDI-LE--NKLLPLRRGYIGVVNRSQ----KDIEG  239 (240)
T ss_pred             EECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCCCCccHH---HHHH-Hh--CCccccCCCEEEEECCCh----HHhhc
Confidence            3688999999999999     79999999999999999999   7777 65  888999999999999999    88853

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=95.14  E-value=0.018  Score=44.38  Aligned_cols=33  Identities=36%  Similarity=0.406  Sum_probs=24.9

Q ss_pred             CceeeeeeehhhccccchhHHHHHHHHHHhCCCC
Q 036922           23 GTRTVGVISKIDQASADQKALAAVQALLLNQGPP   56 (135)
Q Consensus        23 g~RTiGVitKiD~~~~~t~alaAv~alL~~qG~~   56 (135)
                      ..+.||||||+|+..++.+.-.|.+. |.+.|-.
T Consensus        89 ~~pvIGVITK~Dl~~~~~~i~~a~~~-L~~aG~~  121 (143)
T PF10662_consen   89 NKPVIGVITKIDLPSDDANIERAKKW-LKNAGVK  121 (143)
T ss_pred             CCCEEEEEECccCccchhhHHHHHHH-HHHcCCC
Confidence            46899999999999666666667666 6666654

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=94.96  E-value=0.051  Score=52.12  Aligned_cols=68  Identities=24%  Similarity=0.377  Sum_probs=51.8

Q ss_pred             cCceeeeeeehhhccccchhHHHHHHHHHHhCCCCCCCC-CceEEEe-ccceehhhcccCCCCcHHHHHHHHHHHHhhhh
Q 036922           22 QGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTAD-ISWVALI-GQSVSIATAQSGSESSLETAWRAESESLKSIL   99 (135)
Q Consensus        22 ~g~RTiGVitKiD~~~~~t~alaAv~alL~~qG~~~~~~-~pWVavI-nrSq~ia~Adinse~~m~tArr~E~E~f~s~~   99 (135)
                      .|.|||=|+||+|++.+.--.-.-++-+|+  |.-+.-+ .++.||| ||.        ||..|.++.|+-|-+||+++-
T Consensus       478 ~GrRTIfVLTKVDlAEknlA~PdRI~kIle--GKLFPMKALGYfaVVTGrG--------nssdSIdaIR~YEE~FF~nSk  547 (980)
T KOG0447|consen  478 HGRRTIFVLTKVDLAEKNVASPSRIQQIIE--GKLFPMKALGYFAVVTGKG--------NSSESIEAIREYEEEFFQNSK  547 (980)
T ss_pred             CCCeeEEEEeecchhhhccCCHHHHHHHHh--cCccchhhcceeEEEecCC--------CcchhHHHHHHHHHHHhhhhH
Confidence            699999999999999884333337777787  7655432 4667776 444        478899999999999999875

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=89.09  E-value=0.31  Score=38.89  Aligned_cols=27  Identities=33%  Similarity=0.527  Sum_probs=18.7

Q ss_pred             eeeeeehhhccccchhHHHHHHHHHHhCC
Q 036922           26 TVGVISKIDQASADQKALAAVQALLLNQG   54 (135)
Q Consensus        26 TiGVitKiD~~~~~t~alaAv~alL~~qG   54 (135)
                      +|||+||+|++. +.+. +++.-+|...|
T Consensus        93 vIgvVTK~DLae-d~dI-~~~~~~L~eaG  119 (148)
T COG4917          93 VIGVVTKADLAE-DADI-SLVKRWLREAG  119 (148)
T ss_pred             eEEEEecccccc-hHhH-HHHHHHHHHcC
Confidence            999999999995 4443 34555555455

>COG0699 Predicted GTPases (dynamin-related) [General function prediction only]

Probab=81.25  E-value=0.65  Score=38.67  Aligned_cols=106  Identities=10%  Similarity=0.017  Sum_probs=79.3

Q ss_pred             CCCCCCCcccccccccc-cCceeeeeeehhhccccchhHHHHHHHHHHhCCCCCCCCCceEEEeccceehhhcccCCCCc
Q 036922            5 ELPPCESSITSRVLSFL-QGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQSGSESS   83 (135)
Q Consensus         5 ~~Pan~diatS~alkla-~g~RTiGVitKiD~~~~~t~alaAv~alL~~qG~~~~~~~pWVavInrSq~ia~Adinse~~   83 (135)
                      ...++.+.++..+.+.+ ++.|   |.+|+|.++.+++   +...          ....-+.+++..+    .++-....
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---~~~~----------~~~~~~~~~~~~~----~~~~~~~~  156 (546)
T COG0699          97 GIAPNADEEAELSIEVIREADR---VPTKINFLNGGTN---LTLI----------LGNGDVLVVDALE----TDIQLLKT  156 (546)
T ss_pred             chhhhhhhccchhhHhhhhhcc---hhHHHHHHhcCCc---eeee----------eccccccccCchh----HHHHhccc
Confidence            45677888888888888 6666   9999999999999   4210          1222255555655    55667777


Q ss_pred             HHHHHHHHHHHHhhhh-cCCcccchhHHHHHHHHHHHHHHHHHhhccc
Q 036922           84 LETAWRAESESLKSIL-TGAPQSKLGRIALVDALAQQIRKRMKVRVPN  130 (135)
Q Consensus        84 m~tArr~E~E~f~s~~-~g~~~sklG~~~L~~~Lsk~i~~~ik~RlP~  130 (135)
                      ...+=..|.++|...+ +..-....+..++...+++++...+..-.|-
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (546)
T COG0699         157 ALEALVKELEYFAEHPLLEDNEKLVLLPYLKKLLSKILELHLRLLPKY  204 (546)
T ss_pred             chHHHHHHHHHhhcCccccccccccCChhhhhhhhhhHHHHHHhcChh
Confidence            8888899999999999 7666667999999999999888877765543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	135
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	4e-08
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	4e-05

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A Length = 772

 Score = 49.5 bits (117), Expect = 4e-08
 Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 11/113 (9%)

Query: 22  QGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQSGSE 81
           QG RT+GVI+K+D            + +L N+  P      ++ ++ +S          +
Sbjct: 216 QGQRTIGVITKLDLMDEG----TDARDVLENKLLP--LRRGYIGVVNRS----QKDIDGK 265

Query: 82  SSLETAWRAESESLKS-ILTGAPQSKLGRIALVDALAQQIRKRMKVRVPNVLS 133
             +  A  AE +   S         ++G   L   L QQ+   ++  +P + +
Sbjct: 266 KDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRN 318

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* Length = 360

 Score = 40.6 bits (95), Expect = 4e-05
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 11/111 (9%)

Query: 22  QGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQSGSE 81
            G RT GV++KID       A+     +L  +         WV ++ +S     A     
Sbjct: 202 SGDRTFGVLTKIDLMDKGTDAV----EILEGRSFKLK--YPWVGVVNRS----QADINKN 251

Query: 82  SSLETAWRAESESLKS-ILTGAPQSKLGRIALVDALAQQIRKRMKVRVPNV 131
             +  A + E E   +        +K+G   L   L++ + + +K R+P +
Sbjct: 252 VDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGI 302

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	135
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.74
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.68
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.3
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.06
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	98.88
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	98.73

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.74  E-value=1.2e-19  Score=156.71  Aligned_cols=120  Identities=16%  Similarity=0.177  Sum_probs=102.3

Q ss_pred             CCCCCCcccccccccc-----cCceeeeeeehhhccccchhHHHHHHHHHHhCCCCCCCCCceEEEeccceehhhcccCC
Q 036922            6 LPPCESSITSRVLSFL-----QGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQSGS   80 (135)
Q Consensus         6 ~Pan~diatS~alkla-----~g~RTiGVitKiD~~~~~t~alaAv~alL~~qG~~~~~~~pWVavInrSq~ia~Adins   80 (135)
                      .|++.|++++++++++     .|.||||||||.|+++.++.. ..++. |.  |+.+.+.++|++|+|||+    .|++.
T Consensus       192 vt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~-~~~~~-l~--~~~~~l~~g~~~v~nr~~----~~~~~  263 (608)
T 3szr_A          192 VPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTED-KVVDV-VR--NLVFHLKKGYMIVKCRGQ----QEIQD  263 (608)
T ss_dssp             EESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTT-CCCCC-C----CCSCCSSCEECCCCSCT----TCTTT
T ss_pred             EeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHH-HHHHH-Hh--CcccccCceEEEEecCch----hhccc
Confidence            4789999999999999     799999999999999998752 13343 54  899999999999999999    89999


Q ss_pred             CCcHHHHHHHHHHHHhhhh-cCCcc--cchhHHHHHHHHHHHHHHHHHhhcccccc
Q 036922           81 ESSLETAWRAESESLKSIL-TGAPQ--SKLGRIALVDALAQQIRKRMKVRVPNVLS  133 (135)
Q Consensus        81 e~~m~tArr~E~E~f~s~~-~g~~~--sklG~~~L~~~Lsk~i~~~ik~RlP~ils  133 (135)
                      ..++++|+++|.+||.+.+ |.++.  +++|..+|.+.|++.|.+.|+..||.|.+
T Consensus       264 ~~~~~~~~~~E~~fF~~~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~  319 (608)
T 3szr_A          264 QLSLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLEN  319 (608)
T ss_dssp             CCCHHHHTTTHHHHTTTCTTTSGGGGTCC---CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHccCccccccCccccccHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            9999999999999999999 66543  58999999999999999999999999864

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.68  E-value=4e-17  Score=129.49  Aligned_cols=117  Identities=26%  Similarity=0.404  Sum_probs=104.9

Q ss_pred             CCCCCcccccccccc-----cCceeeeeeehhhccccchhHHHHHHHHHHhCCCCCCCCCceEEEeccceehhhcccCCC
Q 036922            7 PPCESSITSRVLSFL-----QGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQSGSE   81 (135)
Q Consensus         7 Pan~diatS~alkla-----~g~RTiGVitKiD~~~~~t~alaAv~alL~~qG~~~~~~~pWVavInrSq~ia~Adinse   81 (135)
                      |++.+..+++.++++     .|.|||+|+||+|+++.++.   +++. +.  +..+...+||+.++++|+    .+++..
T Consensus       182 ~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~---~~~~-~~--~~~~~~~~~~~~v~~~s~----~~i~~~  251 (360)
T 3t34_A          182 PANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTD---AVEI-LE--GRSFKLKYPWVGVVNRSQ----ADINKN  251 (360)
T ss_dssp             ETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCC---SHHH-HT--TSSSCCSSCCEEECCCCH----HHHHTT
T ss_pred             cccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCccc---HHHH-Hc--CccccccCCeEEEEECCh----HHhccC
Confidence            567888888888887     68899999999999998887   4444 43  778889999999999999    888889


Q ss_pred             CcHHHHHHHHHHHHhhhh-cCCcccchhHHHHHHHHHHHHHHHHHhhcccccc
Q 036922           82 SSLETAWRAESESLKSIL-TGAPQSKLGRIALVDALAQQIRKRMKVRVPNVLS  133 (135)
Q Consensus        82 ~~m~tArr~E~E~f~s~~-~g~~~sklG~~~L~~~Lsk~i~~~ik~RlP~ils  133 (135)
                      .++..++..|.+||.+.+ |.++.+++|..+|.+.|++.|...|+..||.|.+
T Consensus       252 ~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~lp~l~~  304 (360)
T 3t34_A          252 VDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQS  304 (360)
T ss_dssp             CCHHHHHHHHHHHHTTCTTTGGGGGGCSHHHHHHHHHHHHHHHHHTTCTTHHH
T ss_pred             CCHHHHHHHHHHHhcCCCccccchhhcCHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            999999999999999998 8888899999999999999999999999999864

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.30  E-value=2.5e-12  Score=102.30  Aligned_cols=118  Identities=21%  Similarity=0.281  Sum_probs=96.6

Q ss_pred             CCCCCCcccccccccc-----cCceeeeeeehhhccccchhHHHHHHHHHHhCCCCCCCCCceEEEeccceehhhcccCC
Q 036922            6 LPPCESSITSRVLSFL-----QGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQSGS   80 (135)
Q Consensus         6 ~Pan~diatS~alkla-----~g~RTiGVitKiD~~~~~t~alaAv~alL~~qG~~~~~~~pWVavInrSq~ia~Adins   80 (135)
                      +|++.++..++.++++     .|.|+|+|+||+|+++.+++   +.+. +.  +..+.+.++|+.+++.|.    .+...
T Consensus       175 ~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~---~~~~-~~--~~~~~l~~~~~~v~~~SA----~~~~~  244 (353)
T 2x2e_A          175 SPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTD---ARDV-LE--NKLLPLRRGYIGVVNRSQ----KDIDG  244 (353)
T ss_dssp             EETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCC---CHHH-HT--TCSSCCTTCEEECCCCCH----HHHHT
T ss_pred             ecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcchh---HHHH-Hh--CCcccccCCceEEEeCCc----ccccc
Confidence            4678888888887676     68999999999999988876   3333 54  566667789999999987    45444


Q ss_pred             CCcHHHHHHHHHHHHhhhh-cCCcccchhHHHHHHHHHHHHHHHHHhhcccccc
Q 036922           81 ESSLETAWRAESESLKSIL-TGAPQSKLGRIALVDALAQQIRKRMKVRVPNVLS  133 (135)
Q Consensus        81 e~~m~tArr~E~E~f~s~~-~g~~~sklG~~~L~~~Lsk~i~~~ik~RlP~ils  133 (135)
                      -.++..+..+|.+||.+.+ |-....++|+..|.+.|.++|...|+..||.|..
T Consensus       245 i~~l~~~l~~e~~~f~~~~~~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~l~~  298 (353)
T 2x2e_A          245 KKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRN  298 (353)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHhccCCcccccHHhhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677888888999998887 7677789999999999999999999999998643

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.06  E-value=1.9e-10  Score=104.56  Aligned_cols=117  Identities=21%  Similarity=0.283  Sum_probs=98.9

Q ss_pred             CCCCCCcccccccccc-----cCceeeeeeehhhccccchhHHHHHHHHHHhCCCCCCCCCceEEEeccceehhhcccCC
Q 036922            6 LPPCESSITSRVLSFL-----QGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQSGS   80 (135)
Q Consensus         6 ~Pan~diatS~alkla-----~g~RTiGVitKiD~~~~~t~alaAv~alL~~qG~~~~~~~pWVavInrSq~ia~Adins   80 (135)
                      ++++.++...+.++++     .|.++|+|+||+|++++++.   +.+. +.  +..+.+..+|+.+|+.|.    .+...
T Consensus       195 VDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~---~~~i-l~--~~~~~l~lg~~~VV~iSA----~~G~G  264 (772)
T 3zvr_A          195 SPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTD---ARDV-LE--NKLLPLRRGYIGVVNRSQ----KDIDG  264 (772)
T ss_dssp             EETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCC---SHHH-HT--TCSSCCSSCEEECCCCCC----EESSS
T ss_pred             EcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchh---hHHH-HH--HHhhhhhccCCceEEecc----ccccc
Confidence            3567777888877666     68999999999999998887   3333 43  556677889999999987    66656


Q ss_pred             CCcHHHHHHHHHHHHhhhh-cCCcccchhHHHHHHHHHHHHHHHHHhhccccc
Q 036922           81 ESSLETAWRAESESLKSIL-TGAPQSKLGRIALVDALAQQIRKRMKVRVPNVL  132 (135)
Q Consensus        81 e~~m~tArr~E~E~f~s~~-~g~~~sklG~~~L~~~Lsk~i~~~ik~RlP~il  132 (135)
                      -.++..+..+|.+||.+.| |.....+.|+..|++.|.++|...|+..||.|.
T Consensus       265 vdeL~eaI~~e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~  317 (772)
T 3zvr_A          265 KKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLR  317 (772)
T ss_dssp             SEEHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHhccCCcchhhhhhcccHHHHHHHHHHHHHHHHHhhCccHH
Confidence            6789999999999999888 888889999999999999999999999999854

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=98.88  E-value=5e-09  Score=78.44  Aligned_cols=117  Identities=21%  Similarity=0.292  Sum_probs=86.8

Q ss_pred             CCCCCcccccccccc-----cCceeeeeeehhhccccchhHHHHHHHHHHhCCCCCCCCCceEEEeccceehhhcccCCC
Q 036922            7 PPCESSITSRVLSFL-----QGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQSGSE   81 (135)
Q Consensus         7 Pan~diatS~alkla-----~g~RTiGVitKiD~~~~~t~alaAv~alL~~qG~~~~~~~pWVavInrSq~ia~Adinse   81 (135)
                      +++.++...+.++++     .|.++|.|+||+|+.+.+..   ..+. +.  +.-+...++|+.++..|.    .+-..-
T Consensus       171 d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~---~~~~-~~--~~~~~~~~~~~~v~~~SA----~~~~gi  240 (299)
T 2aka_B          171 PANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTD---ARDV-LE--NKLLPLRRGYIGVVNRSQ----KDIDGK  240 (299)
T ss_dssp             ESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCC---CHHH-HT--TCSSCCTTCEEECCCCCC----BCTTSC
T ss_pred             cCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCch---HHHH-Hh--CCcCcCCCCcEEEECCCh----hhcccc
Confidence            455566666655555     58899999999999987765   2233 44  444455678999988776    333233


Q ss_pred             CcHHHHHHHHHHHHhhhh-cCCcccchhHHHHHHHHHHHHHHHHHhhcccccc
Q 036922           82 SSLETAWRAESESLKSIL-TGAPQSKLGRIALVDALAQQIRKRMKVRVPNVLS  133 (135)
Q Consensus        82 ~~m~tArr~E~E~f~s~~-~g~~~sklG~~~L~~~Lsk~i~~~ik~RlP~ils  133 (135)
                      .++..+-..|.++|.... +-....++|+..|.+.|.+++...++..||.+..
T Consensus       241 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~~  293 (299)
T 2aka_B          241 KDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRN  293 (299)
T ss_dssp             BCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcCCccccchhhhCHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            467777778999997666 5566678999999999999999999999998753

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=98.73  E-value=2.5e-08  Score=75.70  Aligned_cols=115  Identities=19%  Similarity=0.287  Sum_probs=88.4

Q ss_pred             CCCcccccccccc-----cCceeeeeeehhhccccchhHHHHHHHHHHhCCCCCCCCCceEEEeccceehhhcccCCCCc
Q 036922            9 CESSITSRVLSFL-----QGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQSGSESS   83 (135)
Q Consensus         9 n~diatS~alkla-----~g~RTiGVitKiD~~~~~t~alaAv~alL~~qG~~~~~~~pWVavInrSq~ia~Adinse~~   83 (135)
                      +.++...+.++++     .+.++|.|+||+|+.+.+.+.   .+. +.  ..-+....+|+.++..|.    .+......
T Consensus       179 ~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~~---~~~-~~--~~~~~~~~~~~~v~~~sa----~~~~~~~g  248 (315)
T 1jwy_B          179 NTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDA---MEV-LT--GRVIPLTLGFIGVINRSQ----EDIIAKKS  248 (315)
T ss_dssp             SSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCCC---HHH-HT--TSSSCCTTCEEECCCCCH----HHHSSSCC
T ss_pred             CcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchHH---HHH-Hh--CCCccCCCCeEEEecCCh----hhhccCCC
Confidence            4445444444444     588999999999999877653   333 43  333344589999988887    55555678


Q ss_pred             HHHHHHHHHHHHhhhh-cCCcccchhHHHHHHHHHHHHHHHHHhhcccccc
Q 036922           84 LETAWRAESESLKSIL-TGAPQSKLGRIALVDALAQQIRKRMKVRVPNVLS  133 (135)
Q Consensus        84 m~tArr~E~E~f~s~~-~g~~~sklG~~~L~~~Lsk~i~~~ik~RlP~ils  133 (135)
                      +...+..+.++|...+ |.....++|...|++.|.+.+...++..+|.+..
T Consensus       249 v~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lre~l~~~~~~elP~~~~  299 (315)
T 1jwy_B          249 IRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKV  299 (315)
T ss_dssp             HHHHHHHHHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCccccchhccCHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            9999999999998877 7677789999999999999999999999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	135
d1jwyb_	306	c.37.1.8 (B:) Dynamin G domain {Dictyostelium disc	6e-05

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} Length = 306

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 39.0 bits (90), Expect = 6e-05
 Identities = 19/134 (14%), Positives = 48/134 (35%), Gaps = 16/134 (11%)

Query: 6   LPPCESSITSRVLSFLQ-----GTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTAD 60
            P       S  L   +     G RT+GVI+K+D       A+  +   ++         
Sbjct: 176 TPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGV 235

Query: 61  ISWVALIGQSVSIATAQSGSESSLETAWRAESESLKS-ILTGAPQSKLGRIALVDALAQQ 119
                     ++ +     ++ S+  + ++E    K+  +  +  ++ G   L   L + 
Sbjct: 236 ----------INRSQEDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKL 285

Query: 120 IRKRMKVRVPNVLS 133
           +   ++  +P++  
Sbjct: 286 LMFHIRDTLPDLKV 299

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	135
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.58
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.57

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.58  E-value=9.9e-16  Score=116.22  Aligned_cols=118  Identities=19%  Similarity=0.298  Sum_probs=105.3

Q ss_pred             CCCCCCcccccccccc-----cCceeeeeeehhhccccchhHHHHHHHHHHhCCCCCCCCCceEEEeccceehhhcccCC
Q 036922            6 LPPCESSITSRVLSFL-----QGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQSGS   80 (135)
Q Consensus         6 ~Pan~diatS~alkla-----~g~RTiGVitKiD~~~~~t~alaAv~alL~~qG~~~~~~~pWVavInrSq~ia~Adins   80 (135)
                      +|++.|..++.+++++     .+.|||+|+||+|+.+.+.+   +.+. |.  |......++|.++.++.+    .+..+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~r~i~Vitk~D~~~~~~~---~~~~-l~--~~~~~~~~~~~~~~~~~~----~~~~~  245 (306)
T d1jwyb_         176 TPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTD---AMEV-LT--GRVIPLTLGFIGVINRSQ----EDIIA  245 (306)
T ss_dssp             EESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCC---CHHH-HT--TSSSCCTTCEEECCCCCH----HHHSS
T ss_pred             ecccccccccHHHHHHHHhCcCCCeEEEEEeccccccchhH---HHHH-Hh--CCcccccCCceeeecCch----hhccc
Confidence            4788899999999998     57899999999999999988   4444 54  888889999999999998    77778


Q ss_pred             CCcHHHHHHHHHHHHhhhh-cCCcccchhHHHHHHHHHHHHHHHHHhhcccccc
Q 036922           81 ESSLETAWRAESESLKSIL-TGAPQSKLGRIALVDALAQQIRKRMKVRVPNVLS  133 (135)
Q Consensus        81 e~~m~tArr~E~E~f~s~~-~g~~~sklG~~~L~~~Lsk~i~~~ik~RlP~ils  133 (135)
                      ..+++.+++.|.+||.+.+ +.++.+++|..+|...|++.+...|+.+||.|..
T Consensus       246 ~~~~~~~~~~E~~~f~~~~~~~~l~~r~Gi~~L~~~L~~~L~~~i~~~lP~i~~  299 (306)
T d1jwyb_         246 KKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKV  299 (306)
T ss_dssp             SCCHHHHHHHHHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhCCchhcchHHHhhHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            8999999999999999987 8899999999999999999999999999998753

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=2.4e-15  Score=113.05  Aligned_cols=118  Identities=21%  Similarity=0.284  Sum_probs=104.7

Q ss_pred             CCCCCCcccccccccc-----cCceeeeeeehhhccccchhHHHHHHHHHHhCCCCCCCCCceEEEeccceehhhcccCC
Q 036922            6 LPPCESSITSRVLSFL-----QGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQSGS   80 (135)
Q Consensus         6 ~Pan~diatS~alkla-----~g~RTiGVitKiD~~~~~t~alaAv~alL~~qG~~~~~~~pWVavInrSq~ia~Adins   80 (135)
                      .+++.|+.++.++.++     .+.|||||+||+|+-+.++..   .+. +.  +......+.|..+.++++    .+++.
T Consensus       170 ~~a~~~~~~~~~~~~~~~~~~~~~r~i~Vltk~D~~~~~~~~---~~~-~~--~~~~~~~~~~~~~~~~~~----~~~~~  239 (299)
T d2akab1         170 SPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDA---RDV-LE--NKLLPLRRGYIGVVNRSQ----KDIDG  239 (299)
T ss_dssp             EESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCCC---HHH-HT--TCSSCCTTCEEECCCCCC----BCTTS
T ss_pred             cccccchhhhHHHHHHHHhCcCCCceeeEEeccccccchhhH---HHH-Hh--cccccccCCeeeeecCcc----ccccc
Confidence            3678899999998888     688999999999999988773   333 54  888888999999999999    78888


Q ss_pred             CCcHHHHHHHHHHHHhhhh-cCCcccchhHHHHHHHHHHHHHHHHHhhcccccc
Q 036922           81 ESSLETAWRAESESLKSIL-TGAPQSKLGRIALVDALAQQIRKRMKVRVPNVLS  133 (135)
Q Consensus        81 e~~m~tArr~E~E~f~s~~-~g~~~sklG~~~L~~~Lsk~i~~~ik~RlP~ils  133 (135)
                      ..+.+.++..|.++|.+.+ +.++.+++|..+|.+.|++.|.++|+..||.|.+
T Consensus       240 ~~~~~~~~~~E~~~f~~~~~~~~l~~~~gi~~L~~~L~~~L~~~i~~~lp~i~~  293 (299)
T d2akab1         240 KKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRN  293 (299)
T ss_dssp             CBCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCccccchHHhhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999987 8899999999999999999999999999999864