Citrus Sinensis ID: 036925
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 639 | 2.2.26 [Sep-21-2011] | |||||||
| Q54RP0 | 648 | UDP-galactose:fucoside al | yes | no | 0.281 | 0.277 | 0.231 | 0.0003 |
| >sp|Q54RP0|AGTA_DICDI UDP-galactose:fucoside alpha-3-galactosyltransferase OS=Dictyostelium discoideum GN=agtA PE=1 SV=1 | Back alignment and function desciption |
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Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 88/203 (43%), Gaps = 23/203 (11%)
Query: 191 WGSPTFHKMGREKAILIDSVLPFGFELLMCDTDMVWLKNPLPYFARYPDADILTSSDQVV 250
+G F + EK +++ VL G+ +L DTD+VW ++P +F Y D +Q
Sbjct: 102 YGDIGFRAICNEKPLVVLDVLKKGYNVLWTDTDIVWKRDPFIHF--YQDI------NQEN 153
Query: 251 PTVVDDRLDIW-QQVGAAYNVGIFHWRPTESAKKFAKEWKEMI--LADDKI-----WDQN 302
DD +D++ QQ G + R + KF ++ + DD+I
Sbjct: 154 QFTNDDDIDLYVQQDDDDICAGFYFIRSNQRTIKFIQDSINFLNPCIDDQIAMRLFLKSQ 213
Query: 303 GFNELIRRQLGPSVSEDSELVYAYDGNLKLGVLPASIFCSGHTYFVQAMYKQLRLEPYAV 362
G N + + + S+SE+ + ++ +L +F +G YF + ++ + P+ +
Sbjct: 214 GIN-IKSKNILLSLSENDK-----KDKIRYRLLDKKLFPNGTNYFNLKITQRDNITPFII 267
Query: 363 HTTFQYAGTEGKRHRLREAMVFY 385
H G K+ R E ++Y
Sbjct: 268 HNNC-IIGHRSKKDRFIEYGLWY 289
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Specifically catalyzes the transfer of a galactosyl residue to the hydroxyproline-linked saccharide on Skp1 protein (fpaA/fpaB). Catalyzes the formation of a Gal-alpha-1,3-Fuc linkage, leading to Gal-Fuc-Gal-GlcNAc-HyPro143-Skp1. Dictyostelium discoideum (taxid: 44689) EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 3EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 639 | ||||||
| 255557809 | 639 | reticulon3-A3, putative [Ricinus communi | 0.989 | 0.989 | 0.749 | 0.0 | |
| 296085465 | 642 | unnamed protein product [Vitis vinifera] | 0.987 | 0.982 | 0.752 | 0.0 | |
| 356496487 | 627 | PREDICTED: uncharacterized protein LOC10 | 0.974 | 0.993 | 0.734 | 0.0 | |
| 356540910 | 632 | PREDICTED: uncharacterized protein LOC10 | 0.981 | 0.992 | 0.737 | 0.0 | |
| 359474749 | 631 | PREDICTED: uncharacterized protein LOC10 | 0.973 | 0.985 | 0.754 | 0.0 | |
| 30686478 | 644 | xyloglucanase 113 [Arabidopsis thaliana] | 0.985 | 0.978 | 0.727 | 0.0 | |
| 224129610 | 638 | predicted protein [Populus trichocarpa] | 0.967 | 0.968 | 0.732 | 0.0 | |
| 222423247 | 644 | AT2G35610 [Arabidopsis thaliana] | 0.985 | 0.978 | 0.726 | 0.0 | |
| 356558894 | 638 | PREDICTED: uncharacterized protein LOC10 | 0.992 | 0.993 | 0.712 | 0.0 | |
| 356560983 | 639 | PREDICTED: uncharacterized protein LOC10 | 0.982 | 0.982 | 0.703 | 0.0 |
| >gi|255557809|ref|XP_002519934.1| reticulon3-A3, putative [Ricinus communis] gi|223540980|gb|EEF42538.1| reticulon3-A3, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1006 bits (2600), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/646 (74%), Positives = 558/646 (86%), Gaps = 14/646 (2%)
Query: 1 MGGWRNWYQELVNSKPLFLTIYTTVIVGIVFSSFYVFSAVYSPSSASANWFSSPPSISHS 60
M WRN Y E++N+KPLFLTIY TV+ GI+FSSFYVFSAVYS + +S++ S S
Sbjct: 1 MAVWRNAYHEVINAKPLFLTIYATVLFGILFSSFYVFSAVYSATKSSSS-----LSWVSS 55
Query: 61 PVAASSYINVAPNFSPTLKVSAIPPPLPQS-----SSKQVKPIWEVP--QTKRLPSLKSF 113
P ++ SY + + N S + + P +S SS PIWE+P +K LP +K F
Sbjct: 56 PPSSFSYTDGSVNGSQGTPSTTVSSPTTKSQQDKKSSILETPIWEIPPPNSKMLP-IKKF 114
Query: 114 QLTKELVEQRVQDNIIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGALDTKLVKALYWK 173
+LTK+LVE+RV+DN+II+TFGN+AFMDFIL WV+ LTDLGLSN+LVGA+DTKL++ALYWK
Sbjct: 115 RLTKQLVEKRVKDNVIIVTFGNFAFMDFILTWVKHLTDLGLSNLLVGAMDTKLLEALYWK 174
Query: 174 GVPVFDMGSHMSTMDVGWGSPTFHKMGREKAILIDSVLPFGFELLMCDTDMVWLKNPLPY 233
GVPVFDMGSHMST DVGWGSPTFHKMGREK ILID+ LPFGFELLMCDTDMVWLKNPLPY
Sbjct: 175 GVPVFDMGSHMSTADVGWGSPTFHKMGREKVILIDAFLPFGFELLMCDTDMVWLKNPLPY 234
Query: 234 FARYPDADILTSSDQVVPTVVDDRLDIWQQVGAAYNVGIFHWRPTESAKKFAKEWKEMIL 293
ARYPDAD+LTSSDQVVPTVVDDRLDIWQ+VGAAYN+GIFHWRPTES+KK AKEWKE++L
Sbjct: 235 LARYPDADVLTSSDQVVPTVVDDRLDIWQEVGAAYNIGIFHWRPTESSKKLAKEWKEILL 294
Query: 294 ADDKIWDQNGFNELIRRQLGPSVSEDSELVYAYDGNLKLGVLPASIFCSGHTYFVQAMYK 353
ADDKIWDQNGFN+++RRQLGPSV +DS LVYA+DGNLKLG+LPASIFCSGHTYFVQAMY+
Sbjct: 295 ADDKIWDQNGFNDIVRRQLGPSVDDDSGLVYAFDGNLKLGILPASIFCSGHTYFVQAMYQ 354
Query: 354 QLRLEPYAVHTTFQYAGTEGKRHRLREAMVFYDPPEYYDTPGGFLSFKPFIPKSLLLDGK 413
QLRLEPYAVHTTFQYAGTEGKRHRLREAMVFYDPPEYYD PGGFLSFKP IPK LLL+G+
Sbjct: 355 QLRLEPYAVHTTFQYAGTEGKRHRLREAMVFYDPPEYYDAPGGFLSFKPSIPKGLLLNGE 414
Query: 414 HDLESHFALVNYQMKQIRTALAIASVLNRTLVMPPLWCRLDRLWFPHPGVLEGTMTRQPF 473
H++ESHF+LVNYQ+KQIRTALA+AS+LNRTLVMPP+WCRLDRLWFPHPGVL G+MTRQPF
Sbjct: 415 HNVESHFSLVNYQIKQIRTALAVASLLNRTLVMPPIWCRLDRLWFPHPGVLVGSMTRQPF 474
Query: 474 LCPLDHVFEVNVMLQQLPEDEYGPGIGFREYSFMDNPSVPKQVKESRLEVQLCDDTLIDC 533
+CPLDHVFEVNVML+Q PE+E+GPGI REYSF+DNP++PK VKES L+V LC + C
Sbjct: 475 ICPLDHVFEVNVMLKQQPEEEFGPGINIREYSFLDNPALPKHVKESWLDVHLCQEGAQAC 534
Query: 534 QASSNTSSPGILRFPRHSSEETFKTVFSSFKDVKVINFSSMKNAFLNFTDKTREERFRRR 593
A+ TSS G+L+FP+ SSEE FKTVFSSFKDVKVI FSSM++AFL FTDK RE +FR R
Sbjct: 535 YANGTTSS-GVLKFPKGSSEEKFKTVFSSFKDVKVIQFSSMQDAFLGFTDKEREAKFRNR 593
Query: 594 VKRYVGIWCCVDSHTPGHIYYDMYWDEKPDWKPIPPQTPGDDHLPW 639
VKRY+GIWCCVDSHTPGHIYYDMYWDEKP WK +PP+TP DH PW
Sbjct: 594 VKRYLGIWCCVDSHTPGHIYYDMYWDEKPGWKAMPPETPELDHPPW 639
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296085465|emb|CBI29197.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356496487|ref|XP_003517099.1| PREDICTED: uncharacterized protein LOC100776463 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356540910|ref|XP_003538927.1| PREDICTED: uncharacterized protein LOC100789338 [Glycine max] | Back alignment and taxonomy information |
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| >gi|359474749|ref|XP_002269181.2| PREDICTED: uncharacterized protein LOC100263017 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|30686478|ref|NP_850250.1| xyloglucanase 113 [Arabidopsis thaliana] gi|18377747|gb|AAL67023.1| unknown protein [Arabidopsis thaliana] gi|330254034|gb|AEC09128.1| xyloglucanase 113 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|224129610|ref|XP_002328759.1| predicted protein [Populus trichocarpa] gi|222839057|gb|EEE77408.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|222423247|dbj|BAH19600.1| AT2G35610 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|356558894|ref|XP_003547737.1| PREDICTED: uncharacterized protein LOC100780346 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356560983|ref|XP_003548765.1| PREDICTED: uncharacterized protein LOC100819032 [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 639 | ||||||
| TAIR|locus:2058769 | 644 | XEG113 "xyloglucanase 113" [Ar | 0.985 | 0.978 | 0.685 | 2.9e-254 | |
| TAIR|locus:2026831 | 537 | RAY1 "REDUCED ARABINOSE YARIV | 0.273 | 0.325 | 0.273 | 3.3e-11 | |
| TAIR|locus:2156304 | 367 | AT5G44820 "AT5G44820" [Arabido | 0.341 | 0.594 | 0.266 | 2.3e-07 | |
| WB|WBGene00018275 | 389 | F41C3.11 [Caenorhabditis elega | 0.303 | 0.498 | 0.25 | 7.2e-06 | |
| TAIR|locus:2133457 | 367 | RGXT2 "rhamnogalacturonan xylo | 0.392 | 0.683 | 0.247 | 8.3e-06 | |
| TAIR|locus:2027605 | 383 | RGXT3 "RhamnoGalacturonan spec | 0.505 | 0.843 | 0.210 | 9e-06 | |
| TAIR|locus:2133392 | 361 | RGXT1 "rhamnogalacturonan xylo | 0.413 | 0.731 | 0.232 | 0.00017 | |
| TAIR|locus:2124968 | 360 | MGP4 "male gametophyte defecti | 0.325 | 0.577 | 0.245 | 0.00028 | |
| TAIR|locus:2016487 | 428 | RRA3 "reduced residual arabino | 0.286 | 0.427 | 0.236 | 0.00062 |
| TAIR|locus:2058769 XEG113 "xyloglucanase 113" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2448 (866.8 bits), Expect = 2.9e-254, P = 2.9e-254
Identities = 443/646 (68%), Positives = 523/646 (80%)
Query: 3 GWRNWYQELVNSKPLFLTIYTTVIVGIXXXXXXXXXXXXXXXXXXXXXXXXXXXISHSPV 62
GWRN +++ NSKPLF+TIY TVI+G+ +S P+
Sbjct: 4 GWRNGFRDATNSKPLFVTIYATVIIGVLVSSFYVFSAIYSPTNGSSSF------LSFPPL 57
Query: 63 AASSYINVAPNFSPTLKVSAIPPPLPQS---------SSKQVKPIW-EVPQTKRLPSLKS 112
+ S I+ P + TL++ PPP PQ+ + IW P+ K++P L++
Sbjct: 58 STSGRIHSLPQENATLELPVAPPPPPQALPPPVLEEAQGNSLGKIWVSPPRDKKMPPLET 117
Query: 113 FQLTKELVEQRVQDNIIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGALDTKLVKALYW 172
F+LTKEL +RV+DN+II+TFGNYAFMDFIL WV+ LTDL LSNILVGA+DTKL++ALYW
Sbjct: 118 FKLTKELFGERVKDNVIIVTFGNYAFMDFILTWVKHLTDLDLSNILVGAMDTKLLEALYW 177
Query: 173 KGVPVFDMGSHMSTMDVGWGSPTFHKMGREKAILIDSVLPFGFELLMCDTDMVWLKNPLP 232
KGVPVFDMGSHMST+DVGWGSPTFHKMGREK ILIDSVLPFG+ELLMCDTDMVWLKNP+P
Sbjct: 178 KGVPVFDMGSHMSTVDVGWGSPTFHKMGREKVILIDSVLPFGYELLMCDTDMVWLKNPMP 237
Query: 233 YFARYPDADILTSSDQVVPTVVDDRLDIWQQVGAAYNVGIFHWRPTESAKKFAKEWKEMI 292
Y AR+PDAD+LTSSDQVVPTV+DD LDIWQQVGAAYN+GIFHWRPTESAKK AKEWKE++
Sbjct: 238 YLARFPDADVLTSSDQVVPTVIDDSLDIWQQVGAAYNIGIFHWRPTESAKKLAKEWKEIL 297
Query: 293 LADDKIWDQNGFNELIRRQLGPSVSEDSELVYAYDGNLKLGVLPASIFCSGHTYFVQAMY 352
LADDK+WDQNGFNE++RRQLGPSV DS L YAYDGNLK+G+LPASIFCSGHTYFVQAMY
Sbjct: 298 LADDKVWDQNGFNEIVRRQLGPSVEGDSGLFYAYDGNLKVGILPASIFCSGHTYFVQAMY 357
Query: 353 KQLRLEPYAVHTTFQYAGTEGKRHRLREAMVFYDPPEYYDTPGGFLSFKPFIPKSLLLDG 412
+QLRLEPYAVHTTFQYAGTEGKRHRLRE MVFYDPPEYYD+PGGF++FKP IPKSLLLDG
Sbjct: 358 QQLRLEPYAVHTTFQYAGTEGKRHRLREGMVFYDPPEYYDSPGGFIAFKPSIPKSLLLDG 417
Query: 413 KHDLESHFALVNYQMKQIRTALAIASVLNRTLVMPPLWCRLDRLWFPHPGVLEGTMTRQP 472
KH +ESHF LVN+QMKQIR+ALAIAS+LNRTLVMPP+WCRLDRLWF HPG L+G+MTRQP
Sbjct: 418 KHTIESHFILVNHQMKQIRSALAIASLLNRTLVMPPIWCRLDRLWFGHPGTLQGSMTRQP 477
Query: 473 FLCPLDHVFEVNVMLQQLPEDEYGPGIGFREYSFMDNPSVPKQVKESRLEVQLCDDTLID 532
F+CPLDHVFEVN+ML++LPE+E+GPGIG REYSF+DNP +PKQVKES L+VQLC +
Sbjct: 478 FICPLDHVFEVNIMLKELPEEEFGPGIGIREYSFLDNPLLPKQVKESWLDVQLCQEGKEG 537
Query: 533 CQASSNTSSPGILRFPRHSSEETFKTVFSSFKDVKVINFSSMKNAFLNXXXXXXXXXXXX 592
C+AS+NTS +L+FP+ S+E+TFK +FSSF DVKVI FSS+++AF+
Sbjct: 538 CEASNNTSPSRVLKFPKRSNEDTFKAIFSSFDDVKVIKFSSIEDAFIGFSDKEREERFRR 597
Query: 593 XXXXXXGIWCCVDSHTPGHIYYDMYWDEKPDWKPIPPQTPGDDHLP 638
GIWCC ++ TPGHIYYDMYWDEKP WKP+PPQTP +DH P
Sbjct: 598 RVKRYVGIWCCEENKTPGHIYYDMYWDEKPGWKPVPPQTPEEDHPP 643
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| TAIR|locus:2026831 RAY1 "REDUCED ARABINOSE YARIV 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2156304 AT5G44820 "AT5G44820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| WB|WBGene00018275 F41C3.11 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
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| TAIR|locus:2133457 RGXT2 "rhamnogalacturonan xylosyltransferase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2027605 RGXT3 "RhamnoGalacturonan specific Xylosyltransferase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2133392 RGXT1 "rhamnogalacturonan xylosyltransferase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2124968 MGP4 "male gametophyte defective 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2016487 RRA3 "reduced residual arabinose 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 639 | |||
| pfam03407 | 208 | pfam03407, Nucleotid_trans, Nucleotide-diphospho-s | 6e-49 |
| >gnl|CDD|217539 pfam03407, Nucleotid_trans, Nucleotide-diphospho-sugar transferase | Back alignment and domain information |
|---|
Score = 169 bits (430), Expect = 6e-49
Identities = 72/231 (31%), Positives = 100/231 (43%), Gaps = 31/231 (13%)
Query: 154 LSNILVGALDTKLVKALYWKGVPVFDMGSHM---STMDVGWGSPTFHKMGREKAILIDSV 210
L N+LV ALD + K G + + S + S D +GS T+ KM + L+ +
Sbjct: 3 LENLLVVALDEEAYKRCKELGPHICYLLSDVKDVSKKDFVFGSKTYLKMSWRRVRLLLEL 62
Query: 211 LPFGFELLMCDTDMVWLKNPLPYFARYPDADILTSSDQVVPTVVDDRLDIWQQVGAAYNV 270
L G+ + D D+VWL+NP P PDADI+ SSD T D N
Sbjct: 63 LELGYNFIFSDVDVVWLRNPFPLLY-LPDADIIISSDNYDGTTADGL-------KNWLNG 114
Query: 271 GIFHWRPTESAKKFAKEWKEMILADDKIWDQNGFNELIRRQLGPSVSEDSELVYAYDGNL 330
G F+ RPT + K+W E +L + DQ+ FN L+R +
Sbjct: 115 GFFYVRPTNRSIALFKKWAERLLTYPGLHDQDVFNYLLREGAAG------------ELGY 162
Query: 331 KLGVLPASIFCSGHTYFVQAM---YKQLRLEPYAVHTTFQYAGTEGKRHRL 378
K L ++F F Q+ Y Q +P AVH GT+GK HRL
Sbjct: 163 KCRFLDTALF----GGFCQSRDWKYVQTDKKPVAVHANCCS-GTDGKLHRL 208
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Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases. Length = 208 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 639 | |||
| PF03407 | 212 | Nucleotid_trans: Nucleotide-diphospho-sugar transf | 100.0 | |
| cd02537 | 240 | GT8_Glycogenin Glycogenin belongs the GT 8 family | 98.39 | |
| PLN00176 | 333 | galactinol synthase | 98.28 | |
| cd04194 | 248 | GT8_A4GalT_like A4GalT_like proteins catalyze the | 98.16 | |
| cd00505 | 246 | Glyco_transf_8 Members of glycosyltransferase fami | 98.1 | |
| PF01501 | 250 | Glyco_transf_8: Glycosyl transferase family 8; Int | 97.95 | |
| cd06914 | 278 | GT8_GNT1 GNT1 is a fungal enzyme that belongs to t | 97.65 | |
| PF05637 | 239 | Glyco_transf_34: galactosyl transferase GMA12/MNN1 | 97.37 | |
| cd06431 | 280 | GT8_LARGE_C LARGE catalytic domain has closest hom | 97.13 | |
| PLN03181 | 453 | glycosyltransferase; Provisional | 97.09 | |
| cd06430 | 304 | GT8_like_2 GT8_like_2 represents a subfamily of GT | 96.87 | |
| PRK15171 | 334 | lipopolysaccharide 1,3-galactosyltransferase; Prov | 96.77 | |
| PLN03182 | 429 | xyloglucan 6-xylosyltransferase; Provisional | 96.34 | |
| COG1442 | 325 | RfaJ Lipopolysaccharide biosynthesis proteins, LPS | 96.27 | |
| PF10250 | 351 | O-FucT: GDP-fucose protein O-fucosyltransferase; I | 95.66 | |
| cd06432 | 248 | GT8_HUGT1_C_like The C-terminal domain of HUGT1-li | 95.53 | |
| cd06429 | 257 | GT8_like_1 GT8_like_1 represents a subfamily of GT | 94.64 | |
| PF11051 | 271 | Mannosyl_trans3: Mannosyltransferase putative; Int | 91.45 | |
| PF03314 | 222 | DUF273: Protein of unknown function, DUF273; Inter | 90.17 | |
| PLN02910 | 657 | polygalacturonate 4-alpha-galacturonosyltransferas | 84.12 | |
| PLN02829 | 639 | Probable galacturonosyltransferase | 84.01 | |
| KOG3849 | 386 | consensus GDP-fucose protein O-fucosyltransferase | 83.94 | |
| PLN02659 | 534 | Probable galacturonosyltransferase | 82.46 | |
| PLN02870 | 533 | Probable galacturonosyltransferase | 80.35 |
| >PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=321.00 Aligned_cols=205 Identities=39% Similarity=0.667 Sum_probs=177.6
Q ss_pred CCCeEEEEEeCHHHHHHHHhCCCCeEecCCC---CCcCccCCCChHHHHHHHhHHHHHHHHHhcCCceEeeecceeEecC
Q 036925 153 GLSNILVGALDTKLVKALYWKGVPVFDMGSH---MSTMDVGWGSPTFHKMGREKAILIDSVLPFGFELLMCDTDMVWLKN 229 (639)
Q Consensus 153 Gv~n~lVvAlD~~t~~~c~~~Gvpcf~~~s~---~~~~~~~~Gs~~f~~m~~~K~~vl~~lL~~Gy~VL~sDvDVVWlrD 229 (639)
.++|++|+|+|+++++.|+++|++|+..... .......+|++.|++++|.|+.+++.+|++||+|+++|+||||+||
T Consensus 2 ~~~~~lv~a~D~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~L~~G~~vl~~D~Dvv~~~d 81 (212)
T PF03407_consen 2 LIDNFLVVALDEETYDALEELGPPCFYFPSDASESEDSAFRFGSKAFQKLTWLKPKVLLDLLELGYDVLFSDADVVWLRD 81 (212)
T ss_pred ccccEEEEEECHHHHHHHHhcCCCeEEEecccccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCCceEEecCCEEEecC
Confidence 4689999999999999999999998887653 3456788999999999999999999999999999999999999999
Q ss_pred CccccccCCCccEEeccCCCCCCccCcchhhhhhcCCcceeeEEEEecChHHHHHHHHHHHHHHcCCCCCchHHHHHHHH
Q 036925 230 PLPYFARYPDADILTSSDQVVPTVVDDRLDIWQQVGAAYNVGIFHWRPTESAKKFAKEWKEMILADDKIWDQNGFNELIR 309 (639)
Q Consensus 230 Plpyf~~~~~aDv~vSsD~~~~~~~dd~le~w~~~~~~~NtGf~~~R~T~~s~~f~~~W~~~l~~~~~~~DQ~afN~ll~ 309 (639)
|+++| .++++||++|+|+......+ +.+..+|+||||+|+|+++++|++.|.+.+...++.+||.+||.+++
T Consensus 82 p~~~~-~~~~~Di~~~~d~~~~~~~~-------~~~~~~n~G~~~~r~t~~~~~~~~~w~~~~~~~~~~~DQ~~~n~~l~ 153 (212)
T PF03407_consen 82 PLPYF-ENPDADILFSSDGWDGTNSD-------RNGNLVNTGFYYFRPTPRTIAFLEDWLERMAESPGCWDQQAFNELLR 153 (212)
T ss_pred cHHhh-ccCCCceEEecCCCcccchh-------hcCCccccceEEEecCHHHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 99999 34899999999987644221 12456799999999999999999999999988878899999999998
Q ss_pred hhcCCCCCCCccceeeccCceEEEeccccccCCCcchhhh-hhhhcC--CcceEEEEecccCCCchhHHHHH
Q 036925 310 RQLGPSVSEDSELVYAYDGNLKLGVLPASIFCSGHTYFVQ-AMYKQL--RLEPYAVHTTFQYAGTEGKRHRL 378 (639)
Q Consensus 310 ~~~~~~~~~~~~l~~a~~~~l~v~~Lp~~~F~nGh~yF~q-~l~~~~--~~~pyvVHan~~~~G~~~Kr~RL 378 (639)
+.... .+++++++||..+||||++||++ +.++.. +.+||+||+|| +.|.++|++||
T Consensus 154 ~~~~~------------~~~~~~~~L~~~~f~~g~~~f~~~~~~~~~~~~~~p~~vH~n~-~~g~~~K~~~~ 212 (212)
T PF03407_consen 154 EQAAR------------YGGLRVRFLPPSLFPNGHGYFCQSRDWAWVPTKNKPYIVHANC-CDGKEGKRQRF 212 (212)
T ss_pred hcccC------------CcCcEEEEeCHHHeeccccceeecchhhhhccccccceEEEcC-CCChHhHHhhC
Confidence 76421 14799999999999999999999 434333 57999999999 58999999986
|
|
| >cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen | Back alignment and domain information |
|---|
| >PLN00176 galactinol synthase | Back alignment and domain information |
|---|
| >cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface | Back alignment and domain information |
|---|
| >cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis | Back alignment and domain information |
|---|
| >PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
| >cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family | Back alignment and domain information |
|---|
| >PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif | Back alignment and domain information |
|---|
| >cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis | Back alignment and domain information |
|---|
| >PLN03181 glycosyltransferase; Provisional | Back alignment and domain information |
|---|
| >cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function | Back alignment and domain information |
|---|
| >PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional | Back alignment and domain information |
|---|
| >PLN03182 xyloglucan 6-xylosyltransferase; Provisional | Back alignment and domain information |
|---|
| >COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats | Back alignment and domain information |
|---|
| >cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family | Back alignment and domain information |
|---|
| >cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function | Back alignment and domain information |
|---|
| >PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose | Back alignment and domain information |
|---|
| >PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function | Back alignment and domain information |
|---|
| >PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase | Back alignment and domain information |
|---|
| >PLN02829 Probable galacturonosyltransferase | Back alignment and domain information |
|---|
| >KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PLN02659 Probable galacturonosyltransferase | Back alignment and domain information |
|---|
| >PLN02870 Probable galacturonosyltransferase | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 639 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 2e-08
Identities = 78/602 (12%), Positives = 146/602 (24%), Gaps = 210/602 (34%)
Query: 72 PNFSPTLKVSAIPPPLPQS-SSKQVKPIWEVP----QTKRL-PSLKSFQLTKELVEQRVQ 125
F + S +++ I T RL +L S Q +E+V++ V+
Sbjct: 27 DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ--EEMVQKFVE 84
Query: 126 DNIIIMTFGNYAFM----------------------DFILNWVQRLTDLGLSNI-LVGAL 162
+ + I NY F+ D + N Q +S + L
Sbjct: 85 EVLRI----NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140
Query: 163 DTKLVKALYWKGVPVFDMGSHMSTMDVGWGSPTFHKMGREKAILIDSVL-PFGFELLMCD 221
L++ K V + + G G K + V + + M
Sbjct: 141 RQALLELRPAKNVLIDGVL--------GSG----------KTWVALDVCLSYKVQCKMDF 182
Query: 222 TDMVWLKNPLPYFARYPDADILTSSDQVVPTVVDDRLDIWQQVGAAYNVGIFHWRPTESA 281
+ WL + + Q + Q+ + H +
Sbjct: 183 -KIFWLN-----LKNCNSPETVLEMLQ----------KLLYQIDPNWTSRSDHSSNIKLR 226
Query: 282 KKFAKEWKEMILAD----------DKIWDQNGFNELIRRQLGPSVSEDSELVYAYDGNLK 331
+ +L + + ++ A++ + K
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQN-------------------AKAWNAFNLSCK 267
Query: 332 LGVLPASIFCSGHTYFVQAMYKQLRLEPYAVHTTFQYAGTEGKRHRLREAMVFYDPPEYY 391
+L + +KQ+ T + L + P E
Sbjct: 268 --IL------------LTTRFKQV---------TDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 392 DTPGGFLSFKPF-IPKSLLLDGKHDLESHFALVNYQMKQIRTALAIASVLNRTLVMPPLW 450
+L +P +P+ ++ ++ +
Sbjct: 305 SLLLKYLDCRPQDLPR-------------------EVLTT-NPRRLSIIAESIRDGL--- 341
Query: 451 CRLDRLWFPHPGVLEGTMTRQPFLCPLDHVFEVNVMLQQLPEDEYGPGIGFREYS-FMDN 509
D W + L + E + L L EY F S F +
Sbjct: 342 ATWDN-W------------KHVNCDKLTTIIESS--LNVLEPAEYRKM--FDRLSVFPPS 384
Query: 510 PSVPKQV----------KESRLEV-QLCDDTLIDCQASSNTSS-PGI-LRFPRHSSEETF 556
+P + + + V +L +L++ Q +T S P I L E
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY- 443
Query: 557 KTVFSSFKDVKVINFSSMKNAFLNFTDKTREERFRRRVKRYVGIWCCVDSHTPGHIYYDM 616
R V Y I DS Y D
Sbjct: 444 -------------------------------ALHRSIVDHY-NIPKTFDSDDLIPPYLDQ 471
Query: 617 YW 618
Y+
Sbjct: 472 YF 473
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 639 | |||
| 1ll2_A | 333 | Glycogenin-1; protein-substrate complex, beta-alph | 97.92 | |
| 3u2u_A | 263 | Glycogenin-1, GN-1, GN1; structural genomics, stru | 97.71 | |
| 3tzt_A | 276 | Glycosyl transferase family 8; structural genomics | 97.59 | |
| 1g9r_A | 311 | Glycosyl transferase; alpha-beta structure; HET: U | 97.33 | |
| 4ap5_A | 408 | GDP-fucose protein O-fucosyltransferase 2; GT-B, G | 95.02 | |
| 3zy2_A | 362 | Putative GDP-fucose protein O-fucosyltransferase; | 89.57 |
| >1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=9.6e-05 Score=78.03 Aligned_cols=158 Identities=17% Similarity=0.123 Sum_probs=97.9
Q ss_pred EEEEcchhhHHHHHHHHHHHHHcCCC-eEEEEEeC---HHHHHHHHhCCCCeEecCCCCCcCccCC--CChHHHHHHHhH
Q 036925 130 IMTFGNYAFMDFILNWVQRLTDLGLS-NILVGALD---TKLVKALYWKGVPVFDMGSHMSTMDVGW--GSPTFHKMGREK 203 (639)
Q Consensus 130 IVT~~N~ay~df~~NWl~sl~r~Gv~-n~lVvAlD---~~t~~~c~~~Gvpcf~~~s~~~~~~~~~--Gs~~f~~m~~~K 203 (639)
|+..+|..|+.-+.-.+.|+++.+-+ .++|+..| ++..+.|++.+..+.............. ....+...++.|
T Consensus 7 vt~~~d~~Yl~~a~vl~~SL~~~~s~~~l~vlv~~~is~~~~~~L~~~~~~v~~v~~l~~~~~~~~~~~~~~~~~~t~~K 86 (333)
T 1ll2_A 7 VTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTK 86 (333)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTTHHHHHHCGGGHHHHHH
T ss_pred EEEEeCHHHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHhCCEEEEEeecCCcchhhcccccccchHHHHHH
Confidence 34457999999999999999999753 45555543 6777778877765544432111000000 000112355666
Q ss_pred HHHHHHHHhcCCc-eEeeecceeEecCCccccccCCCccEEeccCCCCCCccCcchhhhhhcCCcceeeEEEEecChHHH
Q 036925 204 AILIDSVLPFGFE-LLMCDTDMVWLKNPLPYFARYPDADILTSSDQVVPTVVDDRLDIWQQVGAAYNVGIFHWRPTESAK 282 (639)
Q Consensus 204 ~~vl~~lL~~Gy~-VL~sDvDVVWlrDPlpyf~~~~~aDv~vSsD~~~~~~~dd~le~w~~~~~~~NtGf~~~R~T~~s~ 282 (639)
+.+.. + ..|+ ||+.|+|++.++|+-+.|.. + .+....|. .| ...+|+|+|.++++...
T Consensus 87 l~i~~-l--~~ydrvlYLDaD~lv~~di~eLf~~-~--~~aAv~d~-----------~~---~~~fNsGvmlin~~~~~- 145 (333)
T 1ll2_A 87 LHCWS-L--TQYSKCVFMDADTLVLANIDDLFER-E--ELSAAPDP-----------GW---PDCFNSGVFVYQPSVET- 145 (333)
T ss_dssp GGGGG-C--TTCSEEEEECTTEEECSCCGGGGGS-C--SSEEEECS-----------SS---TTSEEEEEEEECCCHHH-
T ss_pred HHHhH-h--cCCCeEEEEeCCEEeccCHHHHhCC-C--ceeEEecC-----------CC---CcceeeeEEEEeCCHHH-
Confidence 66443 2 3565 99999999999999998863 2 23222231 12 24699999999997433
Q ss_pred HHHHHHHHHHHcCC--CCCchHHHHHHHHh
Q 036925 283 KFAKEWKEMILADD--KIWDQNGFNELIRR 310 (639)
Q Consensus 283 ~f~~~W~~~l~~~~--~~~DQ~afN~ll~~ 310 (639)
++.+.+.+.... ...||.++|.++.+
T Consensus 146 --~~~l~~~~~~~~~~~~~DQ~~LN~~f~~ 173 (333)
T 1ll2_A 146 --YNQLLHVASEQGSFDGGDQGLLNTFFNS 173 (333)
T ss_dssp --HHHHHHHHHHTCCTTSSHHHHHHHHTTT
T ss_pred --HHHHHHHHHhcCCCCCCCHHHHHHHHHh
Confidence 455555544322 34699999998853
|
| >3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A | Back alignment and structure |
|---|
| >3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0 | Back alignment and structure |
|---|
| >1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* | Back alignment and structure |
|---|
| >4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A* | Back alignment and structure |
|---|
| >3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 639 | |||
| d1ll2a_ | 263 | Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: | 98.09 | |
| d1ga8a_ | 282 | Galactosyltransferase LgtC {Neisseria meningitidis | 97.98 |
| >d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Glycogenin domain: Glycogenin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.09 E-value=1.1e-05 Score=78.96 Aligned_cols=161 Identities=17% Similarity=0.053 Sum_probs=103.3
Q ss_pred EEEE-cchhhHHHHHHHHHHHHHcCCC-eEEEEEe---CHHHHHHHHhCCCCeEecCCCCCc--CccCCCChHHHHHHHh
Q 036925 130 IMTF-GNYAFMDFILNWVQRLTDLGLS-NILVGAL---DTKLVKALYWKGVPVFDMGSHMST--MDVGWGSPTFHKMGRE 202 (639)
Q Consensus 130 IVT~-~N~ay~df~~NWl~sl~r~Gv~-n~lVvAl---D~~t~~~c~~~Gvpcf~~~s~~~~--~~~~~Gs~~f~~m~~~ 202 (639)
.||. +|.+|+.-+...+.||++.|-. .++|+.. .++..+.+++.+..+......... .........+...++.
T Consensus 6 ~vt~~t~d~Yl~~a~vl~~SL~~~~~~~~~vvl~~~~i~~~~~~~L~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~ty~ 85 (263)
T d1ll2a_ 6 FVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLT 85 (263)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTTHHHHHHCGGGHHHHH
T ss_pred EEEEEeCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHhCCcceeEEeecCcchhhhhhhccccchhhhH
Confidence 3444 6999999999999999999864 3555554 377788888888877765432111 0001111233445667
Q ss_pred HHHHHHHHHhcCCc-eEeeecceeEecCCccccccCCCccEEeccCCCCCCccCcchhhhhhcCCcceeeEEEEecChHH
Q 036925 203 KAILIDSVLPFGFE-LLMCDTDMVWLKNPLPYFARYPDADILTSSDQVVPTVVDDRLDIWQQVGAAYNVGIFHWRPTESA 281 (639)
Q Consensus 203 K~~vl~~lL~~Gy~-VL~sDvDVVWlrDPlpyf~~~~~aDv~vSsD~~~~~~~dd~le~w~~~~~~~NtGf~~~R~T~~s 281 (639)
|+.+.. + ..|+ ||+.|+|++-++|+-+.|... .-..+. |.. ....+|+|+|.+.++...
T Consensus 86 Kl~i~~-l--~~ydkvlYLDaD~lv~~~id~Lf~~~--~~~a~~-~~~--------------~~~~~nsGv~l~~p~~~~ 145 (263)
T d1ll2a_ 86 KLHCWS-L--TQYSKCVFMDADTLVLANIDDLFERE--ELSAAP-DPG--------------WPDCFNSGVFVYQPSVET 145 (263)
T ss_dssp HGGGGG-C--TTCSEEEEECTTEEECSCCGGGGGSC--SSEEEE-CSS--------------STTSEEEEEEEECCCHHH
T ss_pred HHHHhh-h--cccceEEEeCCCEEEecCHHHHhcCC--ccceec-cCC--------------CcccccCCcEEECccHHH
Confidence 766543 2 3566 999999999999999999632 111111 110 124689999999998876
Q ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHHHhh
Q 036925 282 KKFAKEWKEMILADDKIWDQNGFNELIRRQ 311 (639)
Q Consensus 282 ~~f~~~W~~~l~~~~~~~DQ~afN~ll~~~ 311 (639)
..-+.+..... ......||..+|..+...
T Consensus 146 ~~~i~~~~~~~-~~~~~~dq~~ln~~~~~~ 174 (263)
T d1ll2a_ 146 YNQLLHVASEQ-GSFDGGDQGLLNTFFNSW 174 (263)
T ss_dssp HHHHHHHHHHT-CCTTSSHHHHHHHHTTTT
T ss_pred HHHHHHHHHhh-CCCChhhhhHHHHHHHhh
Confidence 55554433332 223457999999888654
|
| >d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|