Citrus Sinensis ID: 036966
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 546 | 2.2.26 [Sep-21-2011] | |||||||
| Q8W486 | 519 | Uncharacterized protein A | yes | no | 0.912 | 0.959 | 0.806 | 0.0 |
| >sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 857 bits (2214), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/501 (80%), Positives = 449/501 (89%), Gaps = 3/501 (0%)
Query: 46 VGKLSIAVVVLLICTLCLLFSATTIGGGHGSYSATKINVEELWGSAKSGSWRPSSAPRSV 105
V KLSI V+VLLICTL LLFSA IG +KINVEELW SAKSG WRPSSAPRS
Sbjct: 22 VAKLSIGVIVLLICTLSLLFSAN-IGSNREPTRPSKINVEELWESAKSGGWRPSSAPRSD 80
Query: 106 WPPPPQESNGYLRVRCNGGLNQQRTAICNAVLAARIMNATLVLPELDANSFWHDDSGFQG 165
WPPP +E+NGYLRVRCNGGLNQQR+AICNAVLAARIMNATLVLPELDANSFWHDDSGFQG
Sbjct: 81 WPPPTKETNGYLRVRCNGGLNQQRSAICNAVLAARIMNATLVLPELDANSFWHDDSGFQG 140
Query: 166 IYDVEHFIQTLRYDVQIVESIPEIHKNGKTKKIKAYQLRPPRDAPISWYLTEAMEQMKKH 225
IYDVEHFI+TL+YDV+IV IP++HKNGKTKKIKA+Q+RPPRDAPI WYLT A++ M++H
Sbjct: 141 IYDVEHFIETLKYDVKIVGKIPDVHKNGKTKKIKAFQIRPPRDAPIEWYLTTALKAMREH 200
Query: 226 GAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPNIMKLSESIVDKLRAEGHFMSIH 285
AIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKP+IMKLSESIVDKLR++GHFMSIH
Sbjct: 201 SAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPHIMKLSESIVDKLRSQGHFMSIH 260
Query: 286 LRFEMDMLAFAGCFDIFKPEQQRILKKYREENFKEKKLVYKERRAIGKCPLTPEEVGLIL 345
LRFEMDMLAFAGCFDIF PE+Q+IL+KYR+ENF +K+L+Y ERRAIGKCPLTPEEVGLIL
Sbjct: 261 LRFEMDMLAFAGCFDIFNPEEQKILRKYRKENFADKRLIYNERRAIGKCPLTPEEVGLIL 320
Query: 346 RAMGFDNSTKIYLAAGELFGGEKFMKPFRALFPHLENHSSVDPSEELVTNTRGLLGSAVD 405
RAM FDNST+IYLAAGELFGGE+FMKPFR LFP L+NHSSVDPSEEL ++GL+GSAVD
Sbjct: 321 RAMRFDNSTRIYLAAGELFGGEQFMKPFRTLFPRLDNHSSVDPSEELSATSQGLIGSAVD 380
Query: 406 YMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRTTIRPDRKGLAPIFIDRENGRTAGFE 465
YMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRTTIRPDRK LAPIFI RE G+ AGFE
Sbjct: 381 YMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRTTIRPDRKALAPIFIAREKGKRAGFE 440
Query: 466 EAVRHVMLKTNFGGPHKRVPPESFYTNSWPECFCQISAQNPADECPPDNVLDILNSRLES 525
EAVR VMLKTNFGGPHKRV PESFYTNSWPECFCQ++ + +D+CPP+NV++IL+SRLES
Sbjct: 441 EAVRRVMLKTNFGGPHKRVSPESFYTNSWPECFCQMNPKKSSDKCPPNNVIEILDSRLES 500
Query: 526 EARSNSQSLTQGNFSTSILER 546
+S S Q N + + LER
Sbjct: 501 IRDPDSTS--QTNSTVTGLER 519
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Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 546 | ||||||
| 255554048 | 518 | conserved hypothetical protein [Ricinus | 0.915 | 0.965 | 0.836 | 0.0 | |
| 298205158 | 564 | unnamed protein product [Vitis vinifera] | 0.915 | 0.886 | 0.804 | 0.0 | |
| 449530552 | 523 | PREDICTED: DUF246 domain-containing prot | 0.932 | 0.973 | 0.788 | 0.0 | |
| 7211975 | 499 | Similar to the auxin-independent growth | 0.912 | 0.997 | 0.806 | 0.0 | |
| 297848740 | 519 | hypothetical protein ARALYDRAFT_470476 [ | 0.912 | 0.959 | 0.804 | 0.0 | |
| 22329335 | 519 | O-fucosyltransferase-like protein [Arabi | 0.912 | 0.959 | 0.806 | 0.0 | |
| 449432412 | 523 | PREDICTED: DUF246 domain-containing prot | 0.932 | 0.973 | 0.786 | 0.0 | |
| 224055855 | 522 | predicted protein [Populus trichocarpa] | 0.904 | 0.946 | 0.806 | 0.0 | |
| 224129120 | 518 | predicted protein [Populus trichocarpa] | 0.866 | 0.913 | 0.814 | 0.0 | |
| 225433602 | 512 | PREDICTED: DUF246 domain-containing prot | 0.851 | 0.908 | 0.834 | 0.0 |
| >gi|255554048|ref|XP_002518064.1| conserved hypothetical protein [Ricinus communis] gi|223542660|gb|EEF44197.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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Score = 895 bits (2314), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/501 (83%), Positives = 463/501 (92%), Gaps = 1/501 (0%)
Query: 46 VGKLSIAVVVLLICTLCLLFSATTIGGGHGSYSATKINVEELWGSAKSGSWRPSSAPRSV 105
+ KLSIAVVVLLICTL LLFS TTI G S ++INVEELW SA SG WRPSSAPRS
Sbjct: 19 LAKLSIAVVVLLICTLSLLFS-TTINGTTRSAGPSEINVEELWDSANSGGWRPSSAPRSD 77
Query: 106 WPPPPQESNGYLRVRCNGGLNQQRTAICNAVLAARIMNATLVLPELDANSFWHDDSGFQG 165
WP PP+E+NGYLRVRCNGGLNQQR+AICNAVLAARIMNATLVLPELDANSFWHDDSGF G
Sbjct: 78 WPAPPKETNGYLRVRCNGGLNQQRSAICNAVLAARIMNATLVLPELDANSFWHDDSGFHG 137
Query: 166 IYDVEHFIQTLRYDVQIVESIPEIHKNGKTKKIKAYQLRPPRDAPISWYLTEAMEQMKKH 225
IYDVEHFIQ+L+YDV+IVESIPEI KNGKTKKIKA+QLRPPRDAPISWYLT+A+E+MK+H
Sbjct: 138 IYDVEHFIQSLKYDVRIVESIPEIRKNGKTKKIKAFQLRPPRDAPISWYLTDALEKMKQH 197
Query: 226 GAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPNIMKLSESIVDKLRAEGHFMSIH 285
GAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKP+IMKLSESIV+KLRA+GHFM+IH
Sbjct: 198 GAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPHIMKLSESIVNKLRAQGHFMAIH 257
Query: 286 LRFEMDMLAFAGCFDIFKPEQQRILKKYREENFKEKKLVYKERRAIGKCPLTPEEVGLIL 345
LRFEMDMLAFAGCFDIF P +Q++LKKYR++NF +K+LVY ERRAIGKCPLTPEEVGLIL
Sbjct: 258 LRFEMDMLAFAGCFDIFTPAEQKVLKKYRKDNFADKRLVYIERRAIGKCPLTPEEVGLIL 317
Query: 346 RAMGFDNSTKIYLAAGELFGGEKFMKPFRALFPHLENHSSVDPSEELVTNTRGLLGSAVD 405
RAMGFDNST+IYLAAGELFGG++FMKPFR+LFP LENHSSVD +EEL TNT GLLGSAVD
Sbjct: 318 RAMGFDNSTRIYLAAGELFGGQRFMKPFRSLFPRLENHSSVDATEELATNTHGLLGSAVD 377
Query: 406 YMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRTTIRPDRKGLAPIFIDRENGRTAGFE 465
YMVCLL+DIFMPTYDGPSNFANNLLGHRLYYGFRTTIRPDRKGLAPIFIDRENG+ AGFE
Sbjct: 378 YMVCLLADIFMPTYDGPSNFANNLLGHRLYYGFRTTIRPDRKGLAPIFIDRENGKKAGFE 437
Query: 466 EAVRHVMLKTNFGGPHKRVPPESFYTNSWPECFCQISAQNPADECPPDNVLDILNSRLES 525
EAVR VMLKTNFGGPHKR+ PESFYTNSWPECFCQ +NP+D+CPP+NVL+IL+S+LES
Sbjct: 438 EAVRRVMLKTNFGGPHKRISPESFYTNSWPECFCQTETENPSDKCPPENVLEILDSQLES 497
Query: 526 EARSNSQSLTQGNFSTSILER 546
E S+S+SL Q N + S+ ER
Sbjct: 498 EVNSDSESLYQTNSTISLAER 518
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298205158|emb|CBI17217.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449530552|ref|XP_004172258.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|7211975|gb|AAF40446.1|AC004809_4 Similar to the auxin-independent growth promoter (axi 1) gene product from Nicotiana tabacum gb|X80301. ESTs gb|T88041, gb|AA394631 and gb|AA720157 come from this gene [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297848740|ref|XP_002892251.1| hypothetical protein ARALYDRAFT_470476 [Arabidopsis lyrata subsp. lyrata] gi|297338093|gb|EFH68510.1| hypothetical protein ARALYDRAFT_470476 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|22329335|ref|NP_171983.2| O-fucosyltransferase-like protein [Arabidopsis thaliana] gi|75162430|sp|Q8W486.1|Y1491_ARATH RecName: Full=Uncharacterized protein At1g04910 gi|17065372|gb|AAL32840.1| Similar to auxin-independent growth promoter (axi 1) [Arabidopsis thaliana] gi|31711926|gb|AAP68319.1| At1g04910 [Arabidopsis thaliana] gi|332189637|gb|AEE27758.1| O-fucosyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|449432412|ref|XP_004133993.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|224055855|ref|XP_002298687.1| predicted protein [Populus trichocarpa] gi|222845945|gb|EEE83492.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224129120|ref|XP_002328895.1| predicted protein [Populus trichocarpa] gi|222839325|gb|EEE77662.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225433602|ref|XP_002271176.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Vitis vinifera] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 546 | ||||||
| TAIR|locus:2010657 | 519 | AT1G04910 [Arabidopsis thalian | 0.912 | 0.959 | 0.786 | 6.4e-218 | |
| TAIR|locus:2130938 | 549 | AT4G16650 [Arabidopsis thalian | 0.695 | 0.692 | 0.422 | 3.6e-73 | |
| TAIR|locus:2065563 | 638 | AT2G37980 [Arabidopsis thalian | 0.741 | 0.634 | 0.400 | 1.2e-72 | |
| TAIR|locus:2009467 | 565 | AT1G22460 [Arabidopsis thalian | 0.754 | 0.729 | 0.365 | 2.9e-72 | |
| TAIR|locus:2014869 | 499 | AT1G14020 [Arabidopsis thalian | 0.725 | 0.793 | 0.399 | 6.7e-72 | |
| TAIR|locus:2080285 | 638 | AT3G54100 [Arabidopsis thalian | 0.752 | 0.644 | 0.387 | 2.3e-71 | |
| TAIR|locus:2150129 | 631 | FRB1 "FRIABLE 1" [Arabidopsis | 0.750 | 0.649 | 0.394 | 7.7e-71 | |
| TAIR|locus:2143181 | 508 | AT5G15740 [Arabidopsis thalian | 0.719 | 0.773 | 0.398 | 1.6e-70 | |
| TAIR|locus:2121909 | 519 | AT4G24530 [Arabidopsis thalian | 0.340 | 0.358 | 0.42 | 2.3e-70 | |
| TAIR|locus:2157096 | 652 | AT5G35570 [Arabidopsis thalian | 0.736 | 0.616 | 0.386 | 2.6e-70 |
| TAIR|locus:2010657 AT1G04910 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2105 (746.1 bits), Expect = 6.4e-218, P = 6.4e-218
Identities = 394/501 (78%), Positives = 438/501 (87%)
Query: 46 VGKLSIAXXXXXXXXXXXXFSATTIGGGHGSYSATKINVEELWGSAKSGSWRPSSAPRSV 105
V KLSI FSA IG +KINVEELW SAKSG WRPSSAPRS
Sbjct: 22 VAKLSIGVIVLLICTLSLLFSAN-IGSNREPTRPSKINVEELWESAKSGGWRPSSAPRSD 80
Query: 106 WPPPPQESNGYLRVRCNGGLNQQRTAICNAVLAARIMNATLVLPELDANSFWHDDSGFQG 165
WPPP +E+NGYLRVRCNGGLNQQR+AICNAVLAARIMNATLVLPELDANSFWHDDSGFQG
Sbjct: 81 WPPPTKETNGYLRVRCNGGLNQQRSAICNAVLAARIMNATLVLPELDANSFWHDDSGFQG 140
Query: 166 IYDVEHFIQTLRYDVQIVESIPEIHKNGKTKKIKAYQLRPPRDAPISWYLTEAMEQMKKH 225
IYDVEHFI+TL+YDV+IV IP++HKNGKTKKIKA+Q+RPPRDAPI WYLT A++ M++H
Sbjct: 141 IYDVEHFIETLKYDVKIVGKIPDVHKNGKTKKIKAFQIRPPRDAPIEWYLTTALKAMREH 200
Query: 226 GAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPNIMKLSESIVDKLRAEGHFMSIH 285
AIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKP+IMKLSESIVDKLR++GHFMSIH
Sbjct: 201 SAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPHIMKLSESIVDKLRSQGHFMSIH 260
Query: 286 LRFEMDMLAFAGCFDIFKPEQQRILKKYREENFKEKKLVYKERRAIGKCPLTPEEVGLIL 345
LRFEMDMLAFAGCFDIF PE+Q+IL+KYR+ENF +K+L+Y ERRAIGKCPLTPEEVGLIL
Sbjct: 261 LRFEMDMLAFAGCFDIFNPEEQKILRKYRKENFADKRLIYNERRAIGKCPLTPEEVGLIL 320
Query: 346 RAMGFDNSTKIYLAAGELFGGEKFMKPFRALFPHLENHSSVDPSEELVTNTRGLLGSAVD 405
RAM FDNST+IYLAAGELFGGE+FMKPFR LFP L+NHSSVDPSEEL ++GL+GSAVD
Sbjct: 321 RAMRFDNSTRIYLAAGELFGGEQFMKPFRTLFPRLDNHSSVDPSEELSATSQGLIGSAVD 380
Query: 406 YMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRTTIRPDRKGLAPIFIDRENGRTAGFE 465
YMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRTTIRPDRK LAPIFI RE G+ AGFE
Sbjct: 381 YMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRTTIRPDRKALAPIFIAREKGKRAGFE 440
Query: 466 EAVRHVMLKTNFGGPHKRVPPESFYTNSWPECFCQISAQNPADECPPDNVLDILNSRLES 525
EAVR VMLKTNFGGPHKRV PESFYTNSWPECFCQ++ + +D+CPP+NV++IL+SRLES
Sbjct: 441 EAVRRVMLKTNFGGPHKRVSPESFYTNSWPECFCQMNPKKSSDKCPPNNVIEILDSRLES 500
Query: 526 EARSNSQSLTQGNFSTSILER 546
+S S T N + + LER
Sbjct: 501 IRDPDSTSQT--NSTVTGLER 519
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| TAIR|locus:2130938 AT4G16650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2065563 AT2G37980 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2009467 AT1G22460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2014869 AT1G14020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2080285 AT3G54100 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2150129 FRB1 "FRIABLE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2143181 AT5G15740 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2121909 AT4G24530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2157096 AT5G35570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8W486 | Y1491_ARATH | No assigned EC number | 0.8063 | 0.9120 | 0.9595 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 546 | |||
| cd11299 | 290 | cd11299, O-FucT_plant, GDP-fucose protein O-fucosy | 1e-151 | |
| pfam10250 | 315 | pfam10250, O-FucT, GDP-fucose protein O-fucosyltra | 1e-106 | |
| cd11296 | 206 | cd11296, O-FucT_like, GDP-fucose protein O-fucosyl | 2e-10 | |
| cd11296 | 206 | cd11296, O-FucT_like, GDP-fucose protein O-fucosyl | 0.004 |
| >gnl|CDD|211385 cd11299, O-FucT_plant, GDP-fucose protein O-fucosyltransferase, plant specific subfamily | Back alignment and domain information |
|---|
Score = 435 bits (1120), Expect = e-151
Identities = 162/328 (49%), Positives = 211/328 (64%), Gaps = 40/328 (12%)
Query: 116 YLRVRCNGGLNQQRTAICNAVLAARIMNATLVLPELDANSFWHDDSGFQGIYDVEHFIQT 175
YL V NGGLNQQR+ IC+AV AR++NATLVLPELD NS W D S F IYDV+HFI++
Sbjct: 1 YLLVSANGGLNQQRSQICDAVAVARLLNATLVLPELDKNSVWGDSSKFGDIYDVDHFIKS 60
Query: 176 LRYDVQIVESIPEIHKNGKTKKIKAYQLRPPRDAPISWYLTEAMEQMKKHGAIYLTPFSH 235
L+ DV++V+ +PE +KK + R P + S+YL E + +KKHG I L PF
Sbjct: 61 LKDDVRVVKKLPEEL---ASKKPEITVKRVPSRSSPSYYLEEVLPLLKKHGVIRLAPFDS 117
Query: 236 RLAEEIDNPEYQRLRCRVNYHALRFKPNIMKLSESIVDKLR-AEGHFMSIHLRFEMDMLA 294
RLA ++ PE QRLRCRVN+HALRF P I +L + +VD+LR A G F+++HLRFE DMLA
Sbjct: 118 RLANDLLPPEIQRLRCRVNFHALRFVPEIEELGDKLVDRLREAGGPFLALHLRFEKDMLA 177
Query: 295 FAGCFDIFKPEQQRILKKYREENFKEKKLVYKERRAIGKCPLTPEEVGLILRAMGFDNST 354
F+GC GKCPLTPEEVGL+LRA+GF ST
Sbjct: 178 FSGC---------------------------------GKCPLTPEEVGLLLRALGFPRST 204
Query: 355 KIYLAAGELFGGEKFMKPFRALFPHLENHSSVDPSEELVTNT-RGLLGSAVDYMVCLLSD 413
+IYLAAGE++GGE+ + P R++FP+L ++ +EEL + +A+DY+VCL SD
Sbjct: 205 RIYLAAGEIYGGERRLDPLRSIFPNLYTKETLATAEELAPFSGHSSRLAALDYIVCLESD 264
Query: 414 IFMPTYDGPSNFANNLLGHRLYYGFRTT 441
+F+PTY G NFA + GHR Y G R T
Sbjct: 265 VFVPTYGG--NFAKAVAGHRRYLGHRKT 290
|
Some members of this plant-specific family of O-fucosyltransferases have been annotated as auxin-independent growth promotors. The function of the protein seems unclear. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes. Length = 290 |
| >gnl|CDD|220652 pfam10250, O-FucT, GDP-fucose protein O-fucosyltransferase | Back alignment and domain information |
|---|
| >gnl|CDD|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and related proteins | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 546 | |||
| PF10250 | 351 | O-FucT: GDP-fucose protein O-fucosyltransferase; I | 100.0 | |
| KOG3849 | 386 | consensus GDP-fucose protein O-fucosyltransferase | 98.38 | |
| PF05830 | 321 | NodZ: Nodulation protein Z (NodZ); InterPro: IPR00 | 96.45 |
| >PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-54 Score=439.36 Aligned_cols=301 Identities=32% Similarity=0.526 Sum_probs=206.8
Q ss_pred ecCCchhhhhhHhhHHHHHHHhcCeEEecccCCCCcccCCCC-----CcccCcHHHHHHHhhhhhhhhhcCchhhhcccc
Q 036966 121 CNGGLNQQRTAICNAVLAARIMNATLVLPELDANSFWHDDSG-----FQGIYDVEHFIQTLRYDVQIVESIPEIHKNGKT 195 (546)
Q Consensus 121 ~nGGLNqqR~~IcDaVavARiLNATLVlP~L~~~s~WkD~S~-----F~dIFD~dhFI~sL~~dVrIVk~LP~~~~~~~~ 195 (546)
|.||+||||.++++||++|++||+|||||.+.....|++.+. |+++||++||++.++.+|.+.+.+|..+.....
T Consensus 6 ~~GGfnNQr~~~~~a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~ 85 (351)
T PF10250_consen 6 CMGGFNNQRMGFENAVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFR 85 (351)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhccccc
Confidence 789999999999999999999999999999999999999987 999999999999999999999988876553211
Q ss_pred cc--------------------------ccccccCCCC-CCCchhhHHHHHHHHHHh------cceEeccCCcccccCCC
Q 036966 196 KK--------------------------IKAYQLRPPR-DAPISWYLTEAMEQMKKH------GAIYLTPFSHRLAEEID 242 (546)
Q Consensus 196 ~~--------------------------i~~~~~~p~~-~a~~~wY~~~vLP~L~k~------~Vi~l~~fd~rLa~~~~ 242 (546)
.. .......+.. ++.+.||+++++|.+.++ +++.|+++...+..+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 165 (351)
T PF10250_consen 86 LQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYL 165 (351)
T ss_dssp EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GG
T ss_pred hhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhccc
Confidence 10 0011112222 567788999999999887 99999999999988877
Q ss_pred chhHHhhhhhhcccccccchhHHHHHHHHHHHHH-hcCCcceecchhhhhHHhhhcCCCCCCHHHHHHHHHHHHhhhccc
Q 036966 243 NPEYQRLRCRVNYHALRFKPNIMKLSESIVDKLR-AEGHFMSIHLRFEMDMLAFAGCFDIFKPEQQRILKKYREENFKEK 321 (546)
Q Consensus 243 p~eiQrLRCrvnf~ALrF~p~I~~Lg~~lV~RLR-~~GpfiAlHLR~E~DMLAfsgC~~~~~~~E~~eL~~~R~~~w~~k 321 (546)
+.++|| +|+|+++|+++|++++++|+ .+++|||+|||+|+|| +++|.+++ ++..|..+|.. .++
T Consensus 166 ~~~~~r--------~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~--~~~C~~~~---~~~~~~~~~~~--~~~ 230 (351)
T PF10250_consen 166 DRDLQR--------YLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDW--FSACEFKG---ERHLLASPRCW--GKK 230 (351)
T ss_dssp GGGGGG--------G--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHH--HHHHCT-T-------TTTHHHH---GG
T ss_pred CccceE--------EEecCHHHHHHHHHHHHHhhcccCceEEEeecccCch--HhhcccCC---chHHHHHhHhh--ccc
Confidence 788877 99999999999999999999 7899999999999999 88999854 66777766654 445
Q ss_pred ccChHHHhcCCCCCCCHHHHHHHHHHcCCCCCceEEEeeccccCCcccchhHHHhCCccccccCCCChhhhcccccchhh
Q 036966 322 KLVYKERRAIGKCPLTPEEVGLILRAMGFDNSTKIYLAAGELFGGEKFMKPFRALFPHLENHSSVDPSEELVTNTRGLLG 401 (546)
Q Consensus 322 ~i~~~~~R~~G~CPLtPeEvgl~LralGf~~~T~IYlAsGeiyGg~~~l~pL~~~FPnl~tKe~L~~~eEL~~~~~~~~~ 401 (546)
.+.+...|..+.||++|++++.+++++|+.+.|.||||++++|||.+.|.+|++.||++++|+++.+.+|+.++.. .++
T Consensus 231 ~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 309 (351)
T PF10250_consen 231 SINPEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVVTKDDLLSHEELEPLND-DQL 309 (351)
T ss_dssp GTT-----HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS-----------HHHHHHHHGGGT--EE--S------S--
T ss_pred cccchhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhEeccccCCHHHhhhccc-cch
Confidence 6677788889999999999999999999999999999999999999999999999999999999999999887544 788
Q ss_pred hhhHhhhhhcCccccccCCCCchhhhhhhhhcccccCc
Q 036966 402 SAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFR 439 (546)
Q Consensus 402 AALDYiVcl~SDVFv~t~~G~sNfa~~V~GhR~y~G~~ 439 (546)
|+||++||++||+||+|.. |+|+.+|+++|.|.|+.
T Consensus 310 a~vD~~i~~~s~~Figt~~--Stfs~~i~~~R~~~g~~ 345 (351)
T PF10250_consen 310 AMVDQEICSRSDVFIGTCG--STFSSNIARERHYRGKP 345 (351)
T ss_dssp HHHHHHHHHHSSEEEE-TT---HHHHHHHHHHHHSSSS
T ss_pred hHHHHHHHhcCCEEEecCc--chhHHHhhcccCcCCCC
Confidence 9999999999999999964 59999999999999964
|
Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A. |
| >KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 546 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-09 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 1e-09
Identities = 105/623 (16%), Positives = 187/623 (30%), Gaps = 157/623 (25%)
Query: 5 QQQYSTRDIQE--ERSFI--------------IIRHPNNEEVWPPQIAREARRIERNVGK 48
+ QY +DI E +F+ I+ + EE+ I +
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL---SKEEI--DHIIMSKDAVSG---- 63
Query: 49 LSIAVVVLLICTLCLLFSATT---IGGGHG-SYS--ATKINVE--------ELWGSAKSG 94
+ L TL + +Y + I E ++ +
Sbjct: 64 -----TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 95 SWR--PSSAPRSVWPPPPQESNGYLRVRCNGGLNQQRTAI---------C-NAVLAARIM 142
+ A +V P YL++R L + R A +A +
Sbjct: 119 LYNDNQVFAKYNVSRLQP-----YLKLR--QALLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 143 NATLVLPELDANSFWHDDSGFQGIYDVEHFIQTLRYDVQIVESIPEIHKNGKTKKIKAYQ 202
+ V ++D FW + L+ E++ E+ + + +
Sbjct: 172 LSYKVQCKMDFKIFW--------L--------NLKN-CNSPETVLEMLQKLLYQIDPNWT 214
Query: 203 LRPPRDAPISWYLTEAMEQMKKHGAIYLTPFSHRLA--EEIDNPEYQR---LRCRVNYHA 257
R + I + ++++ + P+ + L + N + L C++
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRL--LKSKPYENCLLVLLNVQNAKAWNAFNLSCKI---- 268
Query: 258 L---RFKPNIMKLSESIVDKLRAEGHFMSIHLRFEMDMLA-FAGC--FDIFKPEQQR--- 308
L RFK LS + + + H M++ +L + C D+ P +
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL--PREVLTTN 326
Query: 309 ------ILKKYRE-----ENFKEKKLVYKERRAIGKC--PLTPEEVGLILRAMG-FDNST 354
I + R+ +N+K K I L P E + + F S
Sbjct: 327 PRRLSIIAESIRDGLATWDNWK-HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 355 KIYLAAGELFGGEKFMKPFRALFPHLENHSSV--DPSEELVT-------------NTRGL 399
I L + + L +S V P E ++ N L
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 400 LGSAVD-YMV--CLLSDIFMPTYDGPSNFANNLLGHRLYYGFRTTIRPDRKGLAP-IFID 455
S VD Y + SD +P Y + + +GH L + P+R L +F+D
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYL--DQYFYSHIGHHL----KNIEHPERMTLFRMVFLD 499
Query: 456 RENGRTAGFEEA-VRHVMLKTNFGGPHKRVPPE-SFYTNSWPECFCQISAQNPADECPPD 513
F E +RH N G + FY I +P E +
Sbjct: 500 ------FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP-------YICDNDPKYERLVN 546
Query: 514 NVLDILNSRLESEARSNSQSLTQ 536
+LD L E+ S L +
Sbjct: 547 AILDFLPKIEENLICSKYTDLLR 569
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 546 | |||
| 4ap5_A | 408 | GDP-fucose protein O-fucosyltransferase 2; GT-B, G | 99.55 | |
| 3zy2_A | 362 | Putative GDP-fucose protein O-fucosyltransferase; | 99.23 | |
| 2hhc_A | 330 | NODZ, nodulation fucosyltransferase NODZ; glycosyl | 97.65 | |
| 2de0_X | 526 | Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran | 97.5 |
| >4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-14 Score=149.75 Aligned_cols=301 Identities=15% Similarity=0.219 Sum_probs=171.1
Q ss_pred CCCceEEEEec-C-CchhhhhhHhhHHHHHHHhcCe----EEecccCCCCcccCC------CCCcccCcHHHHHHHhhhh
Q 036966 112 ESNGYLRVRCN-G-GLNQQRTAICNAVLAARIMNAT----LVLPELDANSFWHDD------SGFQGIYDVEHFIQTLRYD 179 (546)
Q Consensus 112 ~snGyL~V~~n-G-GLNqqR~~IcDaVavARiLNAT----LVlP~L~~~s~WkD~------S~F~dIFD~dhFI~sL~~d 179 (546)
..++||+...| | |.|+||...-.|.+.|+.||.| ||||-...---|+.. -.|++.||++++- ..
T Consensus 20 ~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L~----~~ 95 (408)
T 4ap5_A 20 SRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLN----KN 95 (408)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHHH----TT
T ss_pred cccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHHH----hh
Confidence 57899999764 5 8999999999999999999999 999966433335432 2799999998753 44
Q ss_pred hhhh------hcC-chh-------------hhccc---cc-cccccc------cCCCCCCCchh-h--------------
Q 036966 180 VQIV------ESI-PEI-------------HKNGK---TK-KIKAYQ------LRPPRDAPISW-Y-------------- 214 (546)
Q Consensus 180 VrIV------k~L-P~~-------------~~~~~---~~-~i~~~~------~~p~~~a~~~w-Y-------------- 214 (546)
|+|+ +++ |.. ...+. .. ...+.. ........+.| |
T Consensus 96 vpVI~meeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c~~~~ 175 (408)
T 4ap5_A 96 IPVIEYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSCLSVQ 175 (408)
T ss_dssp SCEEEHHHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEEEEEC
T ss_pred CCeeEHHHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCceeEEEe
Confidence 4443 111 110 00000 00 000000 00000001222 0
Q ss_pred --HHHHHHHHHHhcc---eEeccCCcccccCCCchhHHhhhhhhcccccccchhHHHHHHHHHHHHHhcCCcceecchhh
Q 036966 215 --LTEAMEQMKKHGA---IYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPNIMKLSESIVDKLRAEGHFMSIHLRFE 289 (546)
Q Consensus 215 --~~~vLP~L~k~~V---i~l~~fd~rLa~~~~p~eiQrLRCrvnf~ALrF~p~I~~Lg~~lV~RLR~~GpfiAlHLR~E 289 (546)
...+-|.+.+..- +.+..+...|+.-....+...+| ..|+|.+.|.+.|++.++..- .++|+++|+|..
T Consensus 176 ~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~~-----r~l~~s~~l~~~a~~fi~~~L-~~~~~~~h~r~~ 249 (408)
T 4ap5_A 176 GSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTR-----RSMVFARHLREVGDEFRSRHL-NSTDDADRIPFQ 249 (408)
T ss_dssp SBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHHH-----HTCCBCHHHHHHHHHHHHHHH-CCCTTTTTCCCC
T ss_pred ecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhHH-----HHhhhhHHHHHHHHHHHHHHh-Ccccceeecccc
Confidence 1112344433221 11222222232222223333332 379999999999999988766 469999999999
Q ss_pred hhHHhhhcCCCCCCHHHHHHHHHHHHhhhcccccChHHHhc-CCCCCCCHHHHHHHHHHcCCCCCceEEEeeccccCCcc
Q 036966 290 MDMLAFAGCFDIFKPEQQRILKKYREENFKEKKLVYKERRA-IGKCPLTPEEVGLILRAMGFDNSTKIYLAAGELFGGEK 368 (546)
Q Consensus 290 ~DMLAfsgC~~~~~~~E~~eL~~~R~~~w~~k~i~~~~~R~-~G~CPLtPeEvgl~LralGf~~~T~IYlAsGeiyGg~~ 368 (546)
.||.. .|.......- ..|-..||..... ... ...+|..++.+..+.+.|-=-+.+.||||+=+. +.
T Consensus 250 ~dw~~--~~~~~~~~~~----~~y~~~H~Rr~d~----~~~~~~~~ps~~~~~~~i~~~~~~~~~~~VyiATD~~---~~ 316 (408)
T 4ap5_A 250 EDWMK--MKVKLGSALG----GPYLGVHLRRKDF----IWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAV---RK 316 (408)
T ss_dssp SSGGG--CCCCTTCBCC----EEEEEEEECCTTT----TTTTCSSSCCHHHHHHHHHHHHHHHTCSCEEEEECCC---HH
T ss_pred hhHhh--hhcccccccC----CCccccccccccc----hhhhhccCCCHHHHHHHHHHHHHhcCCCEEEEeCCCc---hh
Confidence 99877 4532210000 0000001111100 001 123344444444444434333445799998652 44
Q ss_pred cchhHHHhCCccccccCCCChhhhcccccchhhhhhHhhhhhcCccccccCCCCchhhhhhhhhcccccCce
Q 036966 369 FMKPFRALFPHLENHSSVDPSEELVTNTRGLLGSAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRT 440 (546)
Q Consensus 369 ~l~pL~~~FPnl~tKe~L~~~eEL~~~~~~~~~AALDYiVcl~SDVFv~t~~G~sNfa~~V~GhR~y~G~~k 440 (546)
.+..|++.+|.++.-.. ..+++... .....|.||-+||.+||+||+|..+ +|+..|.-.|-+.|+..
T Consensus 317 ~~~~l~~~~~~~~~~~~--~~~~~~~~-~d~~~a~idq~Ic~~a~~FiGt~~S--tfS~~I~~eR~~~G~~~ 383 (408)
T 4ap5_A 317 EYEELKKLLPEMVRFEP--TWEELELY-KDGGVAIIDQWICAHARFFIGTSVS--TFSFRIHEEREILGLDP 383 (408)
T ss_dssp HHHHHHHHCTTEECCCC--CHHHHHHH-HHHHHHHHHHHHHHTEEEEEBCTTC--HHHHHHHHHHHHHTBCG
T ss_pred HHHHHHHhCCCcEEecC--cchhhhcc-CcchhhHHHHHHHHhCCeeEeCCcC--chhHHHHHHHHhcCCCC
Confidence 57889999998763322 22333332 2334589999999999999999655 99999999999999863
|
| >3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A* | Back alignment and structure |
|---|
| >2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A* | Back alignment and structure |
|---|
| >2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00