Citrus Sinensis ID: 036974

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520--
Protein Sequence
MVGGSAALGNEDLLQHILSRLPALSFASAACVNKSWNKVCNQILSKPKLASALSLSPSLHVAVSEVLDKVLSEPIRPHFAIASVGMQSKLAATHQLITARLGSRTPVITNAVTGIIGLDAHLDEICEVKWTLLEDNLLNDFDHCYGIVLIVGYVPGLKVETIPLLRSKEEPEFSMVDKFLMDIRHYSASISGCSSPNGIILFGDQNIDIKPILAEMDYGLPEETVIVGDATSCFLFKTGENSQNYNGALYFFDAVALVFSRDSDNSNVPEIQFDITMSTGVLPFGPELKAVSVKEHNADCSLLTARMEGYDGLLHGEEILEDIKEHIDDKYPYLYIGVIHQRGSLQFGSRSYMSLYEVLGAEDQFFIVNGVGIKPGDSFIFYHSDSDTASSSSIDVLDGLRLLNASSCCGTIGRNVTNANKEVFGGLIFSCFSRSVPLSEDDDGDDDEDDNDVYFESYPFCRNFPETPLAGIFCYGEIGRGRGLTRLINQEEEDCSISGRCLLHHYSTVYLVMSYTIPPLLH
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccccHHHHHHHHHHHHHcccccccEEEEEEEccHHHHHHHHHHHHHHcccccEEEcccccEEEccccccccccEEccccccccccccccccEEEEEEEccccccEEEEEcccccccccccccHHHHHHHHcccccccccccccEEEEEccccccHHHHHHHHHHccccccEEEEccccccccccccccccccccEEEccEEEEEEcccccccccccEEEEEEEcccccccccccEEEEEccccccHHHHHHHcccccccccHHHHHHHHHHHHHccccccEEEEEEcccccccccccEEEEEEEcccccccEEEEEcccccccEEEEEcccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEcccccccccccccccccccccccccccHHHcccccccEEEEEcccEEcccccccccccccccccccccccEEEEEEEEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHccHHHHHHHHHHccHHHHHHHHHHcHHHHHHHHHHHccHHHHHHHcccccHHHHHHHHHHHHHcccccccEEEEEEcccccHHHHHHHHHHHHcccccEEEEccccccccccEEcccccEEEEEccccccHHHccccEEEEEEEEccccEEEEEccccccccccccccHHHHHHHHHHccccccccccEEEEEEccccccHHHHHHcccccccccEEEEccccccEEcccccccccccccEcccEEEEEEEEccccccccccEEEEEEEccccccccccEEEEEEEEcccccEEEEEccccccccccHHHHHHHHHHHHHHHcccEEEEEEEHccccccccccEEEEEEEccccccEEEEEccccccccEEEEEcccHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEEccccccccccccccccccccccccccHHHHHHcccccEEEEEEcccEccccccccccccccccccccccEEEEEEEEEEEEEEcccccccc
Coil and Loop (DISEMBL)
mvggsaalgnEDLLQHILSRLPALSFASAACVNKSWNKVCNQILskpklasalslspslHVAVSEVLDKvlsepirphfaIASVGMQSKLAATHQLITArlgsrtpvitNAVTGIIGLDAHLDEICEVKWTLLEDnllndfdhcYGIVLIVGyvpglkvetipllrskeepefsmVDKFLMDIRHYsasisgcsspngiilfgdqnidikpilaemdyglpeetviVGDATscflfktgensqnyngaLYFFDAVALVFsrdsdnsnvpeiqfditmstgvlpfgpelkaVSVKEHNADCSLLTARMegydgllhGEEILEDIKEhiddkypylYIGVIHqrgslqfgsrSYMSLYEVlgaedqffivngvgikpgdsfifyhsdsdtassssidvldglrllnassccgtigrnvtnaNKEVFGGLIFScfsrsvplsedddgdddeddndvyfesypfcrnfpetplagifcygeigrgrgltrlinqeeedcsisgrcllhHYSTVYLVMsytippllh
Flexible Loop (DISEMBL)
MVGGSAALGNEDLLQHILSRLPALSFASAACVNKSWNKVCNQILSKPKLASALSLSPSLHVAVSEVLDKVLSEPIRPHFAIASVGMQSKLAATHQLITarlgsrtpvITNAVTGIIGLDAHLDEICEVKWTLLEDNLLNDFDHCYGIVLIVGYVPGLKVETIPllrskeepeFSMVDKFLMDIRHYSASISGCSSPNGIILFGDQNIDIKPILAEMDYGLPEETVIVGDATSCFLFKTGENSQNYNGALYFFDAVALVFSRDSDNSNVPEIQFDITMSTGVLPFGPELKAVSVKEHNADCSLLTARMEGYDGLLHGEEILEDIKEHIDDKYPYLYIGVIHQRGSLQFGSRSYMSLYEVLGAEDQFFIVNGVGIKPGDSFIFYHSDSDTASSSSIDVLDGLRLLNASSCCGTIGRNVTNANKEVFGGLIFSCFSRSVPLSEDDDGDDDEDDNDVYFESYPFCRNFPETPLAGIFCYGEIGRGRGLTRLINQEEEDCSISGRCLLHHYSTVYLVMSytippllh
Low Complexity Region (SEG)
MVGGSAALGNEDLLQHILSRLPALSFASAACVNKSWNKVCNQIlskpklasalslspslHVAVSEVLDKVLSEPIRPHFAIASVGMQSKLAATHQLITARLGSRTPVITNAVTGIIGLDAHLDEICEVKWTLLEDNLLNDFDHCYGIVLIVGYVPGLKVETIPLLRSKEEPEFSMVDKFLMDIRHYSASISGCSSPNGIILFGDQNIDIKPILAEMDYGLPEETVIVGDATSCFLFKTGENSQNYNGALYFFDAVALVFSRDSDNSNVPEIQFDITMSTGVLPFGPELKAVSVKEHNADCSLLTARMEGYDGLLHGEEILEDIKEHIDDKYPYLYIGVIHQRGSLQFGSRSYMSLYEVLGAEDQFFIVNGVGIKPGDSFIFYHsdsdtassssidVLDGLRLLNASSCCGTIGRNVTNANKEVFGGLIFSCFSRSVPLSedddgdddeddndVYFESYPFCRNFPETPLAGIFCYGEIGRGRGLTRLINQEEEDCSISGRCLLHHYSTVYLVMSYTIPPLLH
Disordered region (IsUnstruct)
***********DLLQHILSRLPALSFASAACVNKSWNKVCNQILSKPKLASALSLSPSLHVAVSEVLDKVLSEPIRPHFAIASVGMQSKLAATHQLITARLGSRTPVITNAVTGIIGLDAHLDEICEVKWTLLEDNLLNDFDHCYGIVLIVGYVPGLKVETIPLLRSKEEPEFSMVDKFLMDIRHYSASISGCSSPNGIILFGDQNIDIKPILAEMDYGLPEETVIVGDATSCFLFKTGENSQNYNGALYFFDAVALVFSRDSDNSNVPEIQFDITMSTGVLPFGPELKAVSVKEHNADCSLLTARMEGYDGLLHGEEILEDIKEHIDDKYPYLYIGVIHQRGSLQFGSRSYMSLYEVLGAEDQFFIVNGVGIKPGDSFIFYHSD*******SIDVLDGLRLLNASSCCGTIGRNVTNANKEVFGGLIFSCFSRS****************DVYFESYPFCRNFPETPLAGIFCYGEIGRGRGLTRLINQEEEDCSISGRCLLHHYSTVYLVMSYTIP****
Disordered Region (DISOPRED)
****S***GNEDLLQHILSRLPALSFASAACVNKSWNKVCNQILSKPKLASALSLSPSLHVAVSEVLDKVLSEPIRPHFAIASVGMQSKLAATHQLITARLGSRTPVITNAVTGIIGLDAHLDEICEVKWTLLEDNLLNDFDHCYGIVLIVGYVPGLKVETIPLLRSKEEPEFSMVDKFLMDIRHYSASISGCSSPNGIILFGDQNIDIKPILAEMDYGLPEETVIVGDATSCF*********NYNGALYFFDAVALVFSRDSDNSNVPEIQFDITMSTGVLPFGPELKAVSVKEHNADCSLLTARMEGYDGLLHGEEILED*****DDKYPYLYIGVIH*********R*YMSLYEVLGAEDQFFIVNGVGIKPGDSFIFYHSDSDTASSSSIDVLDGLRLL******************EVFGGLIFSCFSRSVPLSEDDDGDDDEDDNDVYFESYPFCRNFPETPLAGIFCYGEIGRGRGLTRLINQEEEDCSISGRCLLHHYSTVYLVM**TI*****
Disordered Region (DISEMBL)
MVGGSAALGNEDLLQHILSRLPALSFASAACVNKSWNKVCNQILSKPKLASALSLSPSLHVAVSEVLDKVLSEPIRPHFAIASVGMQSKLAATHQLITARLGSRTPVITNAVTGIIGLDAHLDEICEVKWTLLEDNLLNDFDHCYGIVLIVGYVPGLKVETIPLLRSKEEPEFSMVDKFLMDIRHYSASISGCSSPNGIILFGDQNIDIKPILAEMDYGLPEETVIVGDATSCFLFKTGENSQNYNGALYFFDAVALVFSRDSDNSNVPEIQFDITMSTGVLPFGPELKAVSVKEHNADCSLLTARMEGYDGLLHGEEILEDIKEHIDDKYPYLYIGVIHQRGSLQFGSRSYMSLYEVLGAEDQFFIVNGVGIKPGDSFIFYHSDSDTASSSSIDVLDGLRLLNASSCCGTIGRNVTNANKEVFGGLIFSCFSRSV***********EDDNDVYFESYPFCRNFPETPLAGIFCYGEIGRGRGLTRLINQEEEDCSISGRCLLHHYSTVYLVMSYTIPPLLH
Disordered Region (DISPRO)
****SAALGNEDLLQHILSRLPALSFASAACVNKSWNKVCNQILSKPKLASALSLSPSLHVAVSEVLDKVLSEPIRPHFAIASVGMQSKLAATHQLITARLGSRTPVITNAVTGIIGLDAHLDEICEVKWTLLEDNLLNDFDHCYGIVLIVGYVPGLKVETIPLLRSKEEPEFSMVDKFLMDIRHYSASISGCSSPNGIILFGDQNIDIKPILAEMDYGLPEETVIVGDATSCFLFKTGENSQNYNGALYFFDAVALVFSRDSDNSNVPEIQFDITMSTGVLPFGPELKAVSVKEHNADCSLLTARMEGYDGLLHGEEILEDIKEHIDDKYPYLYIGVIHQRGSLQFGSRSYMSLYEVLGAEDQFFIVNGVGIKPGDSFIFYHSDSDTASSSSIDVLDGLRLLNASSCCG******TNANKEVFGGLIFSCFSRSVPLSEDDDGDDDEDDNDVYFESYPFCRNFPETPLAGIFCYGEIGRGRGLTRLINQEEEDCSISGRCLLHHYSTVYLVMSYTIPP***
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVGGSAALGNEDLLQHILSRLPALSFASAACVNKSWNKVCNQILSKPKLASALSLSPSLHVAVSEVLDKVLSEPIRPHFAIASVGMQSKLAATHQLITARLGSRTPVITNAVTGIIGLDAHLDEICEVKWTLLEDNLLNDFDHCYGIVLIVGYVPGLKVETIPLLRSKEEPEFSMVDKFLMDIRHYSASISGCSSPNGIILFGDQNIDIKPILAEMDYGLPEETVIVGDATSCFLFKTGENSQNYNGALYFFDAVALVFSRDSDNSNVPEIQFDITMSTGVLPFGPELKAVSVKEHNADCSLLTARMEGYDGLLHGEEILEDIKEHIDDKYPYLYIGVIHQRGSLQFGSRSYMSLYEVLGAEDQFFIVNGVGIKPGDSFIFYHSDSDTASSSSIDVLDGLRLLNASSCCGTIGRNVTNANKEVFGGLIFSCFSRSVPLSEDDDGDDDEDDNDVYFESYPFCRNFPETPLAGIFCYGEIGRGRGLTRLINQEEEDCSISGRCLLHHYSTVYLVMSYTIPPLLH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	522	2.2.26 [Sep-21-2011]
Q9FMV0	529	F-box/LRR-repeat protein	yes	no	0.909	0.897	0.392	1e-83

>sp|Q9FMV0|FBL91_ARATH F-box/LRR-repeat protein At5g63520 OS=Arabidopsis thaliana GN=At5g63520 PE=2 SV=1

 Score =  311 bits (796), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 208/530 (39%), Positives = 295/530 (55%), Gaps = 55/530 (10%)

Query: 7   ALGNEDLLQHILSRLPALSFASAACVNKSWNKVCNQILSKPKLASALSLSPSLHVAVSEV 66
           A  NEDLL +IL RLPA SFA A+CVN+ W+ VCN+ILS+PK+ SA S +P    A  EV
Sbjct: 34  AAMNEDLLHNILLRLPAKSFAFASCVNRFWSSVCNRILSRPKMISAFSRNPDQLRAGEEV 93

Query: 67  LDKVLSEPIRPHFAIASVGMQSKLAATHQLITARLGSRTPVITNAVTGIIGLDAHLDEIC 126
           LDKVLSEPIRP F IA++     +  T  LIT R+GSR P+I + VTGI+G +A  D+  
Sbjct: 94  LDKVLSEPIRPQFVIANITC-GNMEETLTLITERVGSRVPIIVSVVTGILGKEACNDKAG 152

Query: 127 EVKWTLLEDNLLNDFDHCYGIVLIVGYVPGLKVETIPLLRSKEEPEFSMVDKFLMDIRHY 186
           EV+     D+ L D  + + I+L +GY+PG+KV+ IP++++K E    M DKF+MDIR+Y
Sbjct: 153 EVRLHSTSDDELFDVAN-FAILLTIGYLPGMKVDIIPVIQAKGESGAEMEDKFVMDIRNY 211

Query: 187 SASISG-CSSPNGIILFGDQNIDIKPILAEMDYGLPEETVIVGDATSCFLFKTGENSQNY 245
            + +SG  ++P  +ILF +     +P+L ++DY +P ETVIVG     FL K G   +N 
Sbjct: 212 MSMVSGHAAAPACLILFAEDTHATEPVLHKLDYAMPAETVIVGGQIGEFLHKRGNEPRNV 271

Query: 246 NGALYFFDAVA-LVFSRDSDN-SNVPEIQFDITMSTGVLPFGPELKAVSVKEH---NADC 300
                    +A L+F+RD    +    IQFD  +S G+       KA +V      +   
Sbjct: 272 QLQKDDIRVLAGLIFARDRHRPAQAERIQFDTAISNGMSSVDLRYKAANVNVSLGPSCPS 331

Query: 301 SLLTARMEGYDGLLHGEEILEDIKEHIDDKYPY---LYIGVIHQRG-SLQFGSR----SY 352
           +LLTA+  G   +L G++IL+DI ++I + Y +    Y+GVI +R  S+    +    S 
Sbjct: 332 TLLTAKRRGEAEVLDGDQILDDI-DNILENYIWENDSYLGVIKRRKYSIGLEEKPKIMSS 390

Query: 353 MSLYEVLGAEDQFFIVNGVGIKPGDSFIFYHSDSDTASSSSIDVLDGLRLLNASSCCGTI 412
           +  ++V G++DQ  +V+G GIK GD F  Y  D   A ++  DV   LR L         
Sbjct: 391 LVFHQVNGSDDQDLLVDGAGIKTGDQFQVYLPDLKVAEAALNDVSAQLRNLK-------- 442

Query: 413 GRNVTNANK-EVFGGLIFSCFSRSVPLSEDDDGDDDEDDNDVYF-----ESYPFCRNFPE 466
               +  NK EV GG  F    R                 D +F     +S PF  NFPE
Sbjct: 443 ----SKPNKPEVVGGFAFVGSCRG----------------DSFFGCPNADSSPFLENFPE 482

Query: 467 TPLAGIFCYGEIGRGRGLTRLINQEEEDCSISGRCLLHHYSTVYLVMSYT 516
            P  GIFC GEIGR    + ++ + EE   +S +  LH YS+VYL++SYT
Sbjct: 483 LPFGGIFCDGEIGR----SLILEEGEEKKEVSIQRFLHVYSSVYLIVSYT 528

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	522
255540187	534	conserved hypothetical protein [Ricinus	0.940	0.919	0.524	1e-145
224136209	541	predicted protein [Populus trichocarpa]	0.944	0.911	0.476	1e-127
147863571	527	hypothetical protein VITISV_019403 [Viti	0.955	0.946	0.493	1e-123
359491092	527	PREDICTED: F-box/LRR-repeat protein At5g	0.955	0.946	0.491	1e-122
224136205	533	f-box family protein [Populus trichocarp	0.938	0.919	0.448	1e-110
224122060	551	predicted protein [Populus trichocarpa]	0.950	0.900	0.432	1e-109
224115878	558	predicted protein [Populus trichocarpa]	0.940	0.879	0.456	1e-108
356516535	540	PREDICTED: F-box/LRR-repeat protein At5g	0.940	0.909	0.462	1e-107
224122064	465	predicted protein [Populus trichocarpa]	0.846	0.950	0.475	1e-106
118488987	533	unknown [Populus trichocarpa x Populus d	0.944	0.924	0.438	1e-106

>gi|255540187|ref|XP_002511158.1| conserved hypothetical protein [Ricinus communis] gi|223550273|gb|EEF51760.1| conserved hypothetical protein [Ricinus communis]

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 285/543 (52%), Positives = 364/543 (67%), Gaps = 52/543 (9%)

Query: 7   ALGNEDLLQHILSRLPALSFASAACVNKSWNKVCNQILSKPKLASALSLSPSLHVAVSEV 66
           +L +ED++++ILSRLPALSF SA+CV+K WNKVC +ILS+PKLASALSL+PSLH AV EV
Sbjct: 9   SLVSEDVIENILSRLPALSFVSASCVSKCWNKVCVRILSRPKLASALSLNPSLHEAVDEV 68

Query: 67  LDKVLSEPIRPHFAIASVGMQSKLAATHQLITARLGSRTPVITNAVTGIIGLDAHLDEIC 126
           L KVL +PI PHF IA +G Q  L  THQL+T R G+R PVITNA +GIIGLDA  DE+ 
Sbjct: 69  LGKVLLQPIVPHFVIACIGKQFSLEITHQLLTKRFGTRVPVITNAASGIIGLDAATDEVR 128

Query: 127 EVKWTLL------------EDNLLNDFDHCYGIVLIVGYVPGLKVETIPLLRSKEEPEFS 174
           EV+W                +NLLN      GIVL+VG+VPGLKVE IPLLRSK  P+ +
Sbjct: 129 EVRWESSDDEDDNNDPDSEANNLLN-----RGIVLVVGFVPGLKVEAIPLLRSKTVPQPT 183

Query: 175 MVDKFLMDIRHYSASISGCSSPNGIILFGDQNIDIKPILAEMDYGLPEETVIVGDATSCF 234
           +VDKFL DI+++S S+S C+SP GIILFGD++ID+KP+LA MDY L EETV+VGDA+ CF
Sbjct: 184 LVDKFLTDIKNFSVSVSDCTSPAGIILFGDRSIDLKPVLARMDYALNEETVMVGDASGCF 243

Query: 235 LFKTGENSQNYNGALYFFDAVALVFSRD---SDNSNVPEIQFDITMSTGVLPFGPELKAV 291
           L ++ +NS N  G +Y  DAVALVFS+D   S  +++ E QF IT+STG++PFGP+L+A+
Sbjct: 244 LCRSVDNSHNNYGDMYLLDAVALVFSKDKHKSHGADIGETQFHITLSTGLMPFGPQLQAI 303

Query: 292 SVKEHNADCSLLTARMEGYDGLLHGEEILEDIKEHI-DDKYPYLYIGVIHQR----GSLQ 346
            V     D S L+ARMEG   +L+GE +L DI +   D+ +P LYIGV+ QR    G+  
Sbjct: 304 CVIARGTDNSWLSARMEGQYDVLNGEGLLTDINDQFTDEDFPELYIGVVQQREYPIGAES 363

Query: 347 FGSRSYMSLYEVLGAEDQFFIVNGVGIKPGDSFIFYHSDSDTASSSSIDVLDGLRLLNAS 406
             SR+ M+ YEV+G E+QFF++NGVGI+PGD F+FYHSDS TASSS  D    L  L + 
Sbjct: 364 TISRASMAFYEVMGGENQFFVINGVGIRPGDYFLFYHSDSGTASSSCSDAYRDLATLKSE 423

Query: 407 SC---CGTIGRNVT-------NANKEVFGGLIFSCFSRSVPLSEDDDGDDDEDDNDVYFE 456
           S    C    + VT          KEVFGGLIFSC+ R      + D             
Sbjct: 424 STHKNCNNPLKEVTGSSSSSSGKEKEVFGGLIFSCYLRGEIFHPNVD------------- 470

Query: 457 SYPFCRNFPETPLAGIFCYGEIGRGRGLTRLINQEEEDCSISGRCLLHHYSTVYLVMSYT 516
           S P   NFP   LAG++C GEIGRG   +     +EE+   S RC LH++S VYLV+SY 
Sbjct: 471 SSPIHENFPGVALAGMYCNGEIGRGSSSSISQEDDEEN---SARCCLHYHSAVYLVLSY- 526

Query: 517 IPP 519
           +PP
Sbjct: 527 VPP 529

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136209|ref|XP_002322272.1| predicted protein [Populus trichocarpa] gi|222869268|gb|EEF06399.1| predicted protein [Populus trichocarpa]

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 259/544 (47%), Positives = 348/544 (63%), Gaps = 51/544 (9%)

Query: 7   ALGNEDLLQHILSRLPALSFASAACVNKSWNKVCNQILSKPKLASALSLSPSLHV----- 61
           +L  E+++Q+ILSRLPAL+FA AACVNK W K+C+QIL +PKLASALSL+PSLH      
Sbjct: 14  SLVTEEIMQNILSRLPALAFAYAACVNKRWYKICSQILKRPKLASALSLNPSLHKTNRAH 73

Query: 62  ---------AVSEVLDKVLSEPIRPHFAIASVGMQSKLAATHQLITARLGSRTPVITNAV 112
                    AV EV+++VLSEPIRPHFAIA +  +  L  TH LI  +LGS  P ITN  
Sbjct: 74  QFLCYDCKDAVEEVIEQVLSEPIRPHFAIACISKEFNLELTHGLIIKKLGSSIPFITNIA 133

Query: 113 TGIIGLDAHLDEICEVKW-TLLEDNLLNDFDHC-YGIVLIVGYVPGLKVETIPLLRSKEE 170
           +GIIG+D   DE+ E KW T        D D    G+VL+VG++PGLK+ TIPLLR  +E
Sbjct: 134 SGIIGVDGIADELYEEKWETTTAGPNSQDSDRVDRGLVLLVGFLPGLKIGTIPLLRPMQE 193

Query: 171 PEFSMVDKFLMDIRHYSASISGCSSPNGIILFGDQNIDIKPILAEMDYGLPEETVIVGDA 230
              ++VDKF+MDI HY++++S C +P GII+FGD+  D+KPI++ MD  +PEETVIVGDA
Sbjct: 194 SN-TLVDKFVMDILHYTSAVSDCPAPTGIIIFGDKTTDMKPIVSNMDCAMPEETVIVGDA 252

Query: 231 TSCFLFKTGENSQNYNGALYFFDAVALVFSRDS-DNSNVPEIQFDITMSTGVLPFGPELK 289
           ++ F+F+ G+NS N+     +F AVALVF+RD      + EIQF +TMS GV+PFGP L+
Sbjct: 253 SANFIFRNGDNSLNHLAHTCYFQAVALVFARDRYKPEGIGEIQFHVTMSKGVMPFGPTLE 312

Query: 290 AVSVKEHNADCSLLTARMEGYDGLLHGEEILEDIKEHIDD--KYPYLYIGVIHQRGSLQ- 346
           A SV + +++CS ++A+++G +G++   EIL D+K+   D  K   +YIGV  +  S   
Sbjct: 313 AASVLQKDSECSWISAKLKGQNGIVAAGEILNDLKQQFRDANKSADIYIGVTKETISTND 372

Query: 347 ---FGSRSYMSLYEVLGAEDQFFIVNGVGIKPGDSFIFYHSDSDTASSSSIDVLDGLRLL 403
              +     +  YEV G   ++F VNGVGI+PGDSF+FY SDS+TASS+     + L  L
Sbjct: 373 SGIWTPGRCLDFYEVRGGGGRYFNVNGVGIQPGDSFLFYQSDSETASSTCDHAFNKLLAL 432

Query: 404 NASSCCGTIGRNV--------TNANKEVFGGLIFSCFSRSVPLSEDDDGDDDEDDNDVYF 455
            A        +N          +  KEV GGLIFSC+ R                 D + 
Sbjct: 433 KAE----LKSKNYLHLSKFADKDDKKEVLGGLIFSCYRRGESFF-----------GDPFV 477

Query: 456 ESYPFCRNFPETPLAGIFCYGEIGRGRGLTRLINQEEEDCSISGRCLLHHYSTVYLVMSY 515
           +SYPFC +FP  P+AG+FC GEIGRG     L+N+E ED + S RC LH YST+YLVMSY
Sbjct: 478 DSYPFCDSFPTAPVAGLFCRGEIGRGP--ESLMNEEYEDVN-SPRCCLHVYSTIYLVMSY 534

Query: 516 TIPP 519
            +PP
Sbjct: 535 -LPP 537

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147863571|emb|CAN79767.1| hypothetical protein VITISV_019403 [Vitis vinifera]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 262/531 (49%), Positives = 352/531 (66%), Gaps = 32/531 (6%)

Query: 3   GGSAALGNEDLLQHILSRLPALSFASAACVNKSWNKVCNQILSKPKLASALSLSPSLHVA 62
           GG  AL +EDLLQ+ILSRLPALSFA+A CV++SW +    +LS+PKLASA+SL+PS   A
Sbjct: 6   GGGVALLSEDLLQNILSRLPALSFANAGCVSRSWRRAAGDVLSRPKLASAISLNPSFQDA 65

Query: 63  VSEVLDKVLSEPIRPHFAIASVGMQSKLAATHQLITARLGSRTPVITNAVTGIIGLDAHL 122
           V EVLD VLS PIRPHFAIA +G++  L  TH+LIT +LGS TPVIT+   GIIG DA  
Sbjct: 66  VKEVLDSVLSRPIRPHFAIACIGLKFSLERTHKLITKKLGSATPVITSVARGIIGSDAIT 125

Query: 123 DEICEVKWTL-LED-NLLNDFDHCYGIVLIVGYVPGLKVETIPLLRSKEEPEFSMVDKFL 180
           +E  EVKW + +ED NL  + D   GIVLIVG++PGLKV+ IPLLR  EEP  S++DKF+
Sbjct: 126 EEFKEVKWGVDVEDFNLPANKDR--GIVLIVGFMPGLKVDAIPLLRELEEPGISLIDKFV 183

Query: 181 MDIRHYSASISGCSSPNGIILFGDQNIDIKPILAEMDYGLPEETVIVGDATSCFLFKTGE 240
           MDIR++SA++SGC+SP GI++FGD++ D+KP+L +MDY +  ETVI+G+ +  F++++G+
Sbjct: 184 MDIRNFSAAVSGCTSPTGIVMFGDKHADMKPVLEKMDYAMSMETVILGEESGHFMYRSGD 243

Query: 241 NSQNYNGALY-FFDAVALVFSRDSDN-SNVPEIQFDITMSTGVLPFGPELKAVSVK---E 295
           +S+N +G+L    D VALVF+RD+D    V E QF + +STGV+P GP LKA SVK   +
Sbjct: 244 DSRNISGSLKNSCDGVALVFARDNDKPQGVGESQFHVALSTGVVPVGPTLKAASVKVKGD 303

Query: 296 HNADCSLLTARMEGYDGLLHGEEILEDIKEHIDDKYPY--LYIGVIHQR----GSLQFGS 349
            +   + LTAR EG    L GE +L DI + ++++     LYIGV  +R    GS +   
Sbjct: 304 GSERSTWLTARKEGLKEALDGERLLHDIYDEMENENASHDLYIGVTKRRKCSIGSEKVRW 363

Query: 350 RSYMSLYEVLGAEDQFFIVNGVGIKPGDSFIFYHSDSDTASSSSIDVLDGLRLLNASSCC 409
            + +  ++VLG ++++  V+GVGIK GD F FY SDSDTA SS   V +  R L  +   
Sbjct: 364 VTTLEFHDVLGGDEEYLFVDGVGIKTGDPFRFYRSDSDTALSSCRHVSEEFRNLKQAWTH 423

Query: 410 GTIG--RNVTNA--NKEVFGGLIFSCFSRSVPLSEDDDGDDDEDDNDVYFESYPFCRNFP 465
                 R V +     EV GG+IFSC+ R         GD      +V  +S PF  NFP
Sbjct: 424 KNSYHFRGVADGGDKTEVCGGIIFSCYGR---------GDSFFGQANV--DSSPFLENFP 472

Query: 466 ETPLAGIFCYGEIGRGRGLTRLINQEEEDCSISGRCLLHHYSTVYLVMSYT 516
             PLAGI C GEIGR   L+   +Q  ++ S S R  LH+YSTVYLV+S+T
Sbjct: 473 GFPLAGIMCGGEIGRVH-LSSADHQGGQEES-SPRSYLHYYSTVYLVISHT 521

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491092|ref|XP_002283895.2| PREDICTED: F-box/LRR-repeat protein At5g63520-like [Vitis vinifera] gi|297734433|emb|CBI15680.3| unnamed protein product [Vitis vinifera]

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 261/531 (49%), Positives = 351/531 (66%), Gaps = 32/531 (6%)

Query: 3   GGSAALGNEDLLQHILSRLPALSFASAACVNKSWNKVCNQILSKPKLASALSLSPSLHVA 62
           GG  AL +EDLLQ+ILSRLPALSFA+A CV++SW +    +LS+PKLASA+SL+PS   A
Sbjct: 6   GGGVALLSEDLLQNILSRLPALSFANAGCVSRSWRRAAGDVLSRPKLASAISLNPSFQDA 65

Query: 63  VSEVLDKVLSEPIRPHFAIASVGMQSKLAATHQLITARLGSRTPVITNAVTGIIGLDAHL 122
           V EVLD VLS PIRPHFAIA +G++  L  TH+LIT +LGS TPVIT+   GIIG DA  
Sbjct: 66  VKEVLDSVLSRPIRPHFAIACIGLKFSLERTHKLITKKLGSATPVITSVARGIIGSDAIT 125

Query: 123 DEICEVKWTL-LED-NLLNDFDHCYGIVLIVGYVPGLKVETIPLLRSKEEPEFSMVDKFL 180
           +E  EVKW + +ED NL  + D   GIVLIVG++PGLKV+ IPLLR  EEP  S++DKF+
Sbjct: 126 EEFKEVKWGVDVEDFNLPANKDR--GIVLIVGFMPGLKVDAIPLLRELEEPGISLIDKFV 183

Query: 181 MDIRHYSASISGCSSPNGIILFGDQNIDIKPILAEMDYGLPEETVIVGDATSCFLFKTGE 240
           MDIR++SA++SGC+SP GI++FGD++ D+KP+L +MDY +  ETVI+G+ +  F++++G+
Sbjct: 184 MDIRNFSAAVSGCTSPTGIVMFGDKHADMKPVLEKMDYAMSMETVILGEESGHFMYRSGD 243

Query: 241 NSQNYNGALY-FFDAVALVFSRDSDN-SNVPEIQFDITMSTGVLPFGPELKAVSVK---E 295
           +S+N +G+L    D VALVF+RD+D    V E QF + +STGV+P GP  KA SVK   +
Sbjct: 244 DSRNISGSLKNSCDGVALVFARDNDKPQGVGETQFHVALSTGVVPVGPTHKAASVKVKGD 303

Query: 296 HNADCSLLTARMEGYDGLLHGEEILEDIKEHIDDKYPY--LYIGVIHQR----GSLQFGS 349
            +   + LTAR EG    L GE +L DI + ++++     LYIGV  +R    GS +   
Sbjct: 304 GSERSTWLTARKEGLKEALDGERLLHDIYDEMENENASHDLYIGVTKRRKCSIGSEKVRW 363

Query: 350 RSYMSLYEVLGAEDQFFIVNGVGIKPGDSFIFYHSDSDTASSSSIDVLDGLRLLNASSCC 409
            + +  ++VLG ++++  V+GVGIK GD F FY SDSDTA SS   V +  R L  +   
Sbjct: 364 VTTLEFHDVLGGDEEYLFVDGVGIKTGDPFRFYRSDSDTALSSCRHVSEEFRNLKQAWTH 423

Query: 410 GTIG--RNVTNA--NKEVFGGLIFSCFSRSVPLSEDDDGDDDEDDNDVYFESYPFCRNFP 465
                 R V +     EV GG+IFSC+ R         GD      +V  +S PF  NFP
Sbjct: 424 KNSYHFRGVADGGDKTEVCGGIIFSCYGR---------GDSFFGQANV--DSSPFLENFP 472

Query: 466 ETPLAGIFCYGEIGRGRGLTRLINQEEEDCSISGRCLLHHYSTVYLVMSYT 516
             PLAGI C GEIGR   L+   +Q  ++ S S R  LH+YSTVYLV+S+T
Sbjct: 473 GFPLAGIMCGGEIGRVH-LSSADHQGGQEES-SPRSYLHYYSTVYLVISHT 521

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136205|ref|XP_002322271.1| f-box family protein [Populus trichocarpa] gi|222869267|gb|EEF06398.1| f-box family protein [Populus trichocarpa]

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 235/524 (44%), Positives = 322/524 (61%), Gaps = 34/524 (6%)

Query: 10  NEDLLQHILSRLPALSFASAACVNKSWNKVCNQILSKPKLASALSLSPSLHVAVSEVLDK 69
           NEDL+ +IL RLPALSFASAACV+KSWN++CNQIL KPK ASA SL+P   VA+ EV++K
Sbjct: 23  NEDLILNILKRLPALSFASAACVSKSWNQICNQILYKPKFASAFSLNPDEKVALEEVVNK 82

Query: 70  VLSEPIRPHFAIASV-GMQSKLAATHQLITARLGSRTPVITNAVTGIIGLDAHLDEICEV 128
           VLSEPIRPHFAIA+V G    L+     +  +LG +TP+I +  +GI+G DA  DE  EV
Sbjct: 83  VLSEPIRPHFAIANVIGSGVDLSERLNFLATKLGFQTPIIVSCTSGIMGRDAVTDEHREV 142

Query: 129 KWTLLEDNLLN-DFDHCYGIVLIVGYVPGLKVETIPLLRSKEEPEFSMVDKFLMDIRHYS 187
              +LE+  ++ + + C GI+L VG++PGLKV+ IPL + ++    +MVD F+MDI+ Y+
Sbjct: 143 ---MLEEYWVDGESNPCNGIILTVGFLPGLKVDAIPLFQPRKGCRATMVDNFVMDIKDYA 199

Query: 188 ASISGCSSPNGIILFGDQNIDIKPILAEMDYGLPEETVIVGDATSCFLFKTGENSQN-YN 246
            SISGC+SP GII+FGD++ D KP++ ++D+ +  +T+I+GD  + FL++ G  S+N Y 
Sbjct: 200 TSISGCASPVGIIMFGDEDADQKPVMEKLDHAMSSDTIIIGDERAQFLYRNGVESRNDYE 259

Query: 247 GALYFFDAVALVFSRDSDN-SNVPEIQFDITMSTGVLPFGPELKAVSVKE---HNADCSL 302
            + YF  AVALVF+RD D      EIQF   +S+GV   GP  KAVSVK+        + 
Sbjct: 260 SSEYFSAAVALVFARDRDKPCGTGEIQFHAALSSGVSAVGPRYKAVSVKKIVSGTGHTTW 319

Query: 303 LTARMEGYDGLLHGEEILEDIKEHIDDK--YPYLYIGVIHQR----GSLQFGSRSYMSLY 356
           LTAR EG   +  G+ IL+DI   + ++  +P LYIGV  QR    GS +    +++  +
Sbjct: 320 LTARREGEHEIQDGQRILDDINNELVNQVGHPDLYIGVTEQRRCFIGSQKSRVMTFLVFH 379

Query: 357 EVLGAEDQFFIVNGVGIKPGDSFIFYHSDSDTASSSSIDVLDGLRLLN----ASSCCGTI 412
            V+G + ++   +GVGI+ GD F FYH D   A SS  +V    R LN    + +C    
Sbjct: 380 GVMGGDQEYLFADGVGIRTGDYFQFYHPDPSAALSSCSNVSKNFRNLNLDWSSRNCLHAR 439

Query: 413 GRNVTNANKEVFGGLIFSCFSRSVPLSEDDDGDDDEDDNDVYFESYPFCRNFPETPLAGI 472
           G      NKE+ GG +FSC  R     E  + D           S PF  NFP  P+AGI
Sbjct: 440 GVYDNVCNKELVGGFVFSCCGRGESFFERCNVD-----------SSPFLDNFPGFPMAGI 488

Query: 473 FCYGEIGRGRGLTRLINQEEEDCSISGRCLLHHYSTVYLVMSYT 516
           FC GEIGRG  +      +EE  S    C LH YS VYL++SYT
Sbjct: 489 FCRGEIGRGFSVFNADEGQEERTS---HCCLHVYSAVYLLVSYT 529

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122060|ref|XP_002318743.1| predicted protein [Populus trichocarpa] gi|222859416|gb|EEE96963.1| predicted protein [Populus trichocarpa]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 238/550 (43%), Positives = 330/550 (60%), Gaps = 54/550 (9%)

Query: 10  NEDLLQHILSRLPALSFASAACVNKSWNKVCNQILSKPKLASALSLSPSLHVAVSEVLDK 69
           NEDL+Q+I+ RLPA SFASAACV+KSWN++CNQILSKPK ASA SL+P+  VA+ EV++K
Sbjct: 19  NEDLVQNIVKRLPASSFASAACVSKSWNQICNQILSKPKFASAFSLNPNEKVALEEVVNK 78

Query: 70  VLSEPIRPHFAIASV-GMQSKLAATHQLITARLGSRTPVITNAVTGIIGLDAHLDEICEV 128
           VLSEPIRPHFAIA+V G    L      +  +LGS+TP+I +  +GI+G DA   E  EV
Sbjct: 79  VLSEPIRPHFAIANVIGSGVDLREKLDFLATKLGSQTPIIVSCASGIMGRDAVTGEHREV 138

Query: 129 KWTLLEDNLLN-DFDHCYGIVLIVGYVPGLKVETIPLLRSKEEPEFSMVDKFLMDIRHYS 187
              +LE+   + +   C+GI+L VG++PGLKV+ IPLL+ ++    ++VD F+M+IR Y+
Sbjct: 139 ---MLEEYWADGESISCFGIILTVGFLPGLKVDVIPLLQPRKVHRPALVDYFVMNIRDYA 195

Query: 188 ASISGCSSPNGIILFGDQNIDIKPILAEMDYGLPEETVIVGDATSCFLFKTGENSQN-YN 246
           AS+SG +SP GIILFGD+  D KP++ ++D+ +  +TVIVGD  + FL+++G  S+N Y 
Sbjct: 196 ASVSGWASPAGIILFGDEGADQKPVMEKLDHAMSRDTVIVGDERAQFLYRSGVESRNDYG 255

Query: 247 GALYFFDAVALVFSRDSDN----------------------SNVPEIQFDITMSTGVLPF 284
            + YF  AVALVF+RD D                           EIQF   +S+GV   
Sbjct: 256 SSEYFPAAVALVFARDRDKPCGIGLLISVFAISSFATKMDWQCTGEIQFHAALSSGVSAI 315

Query: 285 GPELKAVSVKEHNAD---CSLLTARMEGYDGLLHGEEILEDIKEHIDDK--YPYLYIGVI 339
           GP  KAVSV++  ++    +LLTAR EG   +  G+ IL+DI   + ++   P LYIGV 
Sbjct: 316 GPRYKAVSVRKIGSETGCTTLLTARREGEQEIQDGQRILDDINNELVNQIGRPDLYIGVT 375

Query: 340 HQR----GSLQFGSRSYMSLYEVLGAEDQFFIVNGVGIKPGDSFIFYHSDSDTASSSSID 395
            QR    GS +    +++  + V+G + ++   +GVGI+ GD F FYHSD  TA SS  +
Sbjct: 376 EQRKCFIGSEKSRVMTFLVFHGVMGGDQEYLFADGVGIRTGDYFQFYHSDPTTALSSCNE 435

Query: 396 VLDGLRLLN---ASSCCGTIGRNVTNANKEVFGGLIFSCFSRSVPLSEDDDGDDDEDDND 452
           V    R L    +S  C   G +    +KE+ GG +FSC  R     E  + D       
Sbjct: 436 VSKNFRKLKLDWSSRNCLQAGVSDNVCSKELVGGFVFSCCGRGESFFERCNVD------- 488

Query: 453 VYFESYPFCRNFPETPLAGIFCYGEIGRGRGLTRLINQEEEDCSISGRCLLHHYSTVYLV 512
               S PF  NFP  P+AG+FC GEIGRG     ++N +E     +  C LH YST YL+
Sbjct: 489 ----SSPFLDNFPGVPMAGVFCRGEIGRG---FSVLNADEGPEERTLHCCLHVYSTAYLL 541

Query: 513 MSYTIPPLLH 522
           +SYT  P  H
Sbjct: 542 VSYTPAPAEH 551

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115878|ref|XP_002317147.1| predicted protein [Populus trichocarpa] gi|222860212|gb|EEE97759.1| predicted protein [Populus trichocarpa]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 243/532 (45%), Positives = 327/532 (61%), Gaps = 41/532 (7%)

Query: 10  NEDLLQHILSRLPALSFASAACVNKSWNKVCNQILSKPKLASALSLSPSLHVAVSEVLDK 69
           NEDL+Q+IL R PA SFASAACV KSWN+ CNQILSKPKLASA SL+P   VA  EV++K
Sbjct: 49  NEDLVQNILKRTPASSFASAACVCKSWNQTCNQILSKPKLASAFSLNPDQKVASQEVVNK 108

Query: 70  VLSEPIRPHFAIASV-GMQSKLAATHQLITARLGSRTPVITNAVTGIIGLDAHLDEICEV 128
           VLSEPIRP FAIA+V G    L+ T   + A+LGS+TP+I +   GIIG DA  DE  EV
Sbjct: 109 VLSEPIRPQFAIANVIGSGVDLSETLNFLAAKLGSKTPIIVSCANGIIGRDAVTDEHQEV 168

Query: 129 KWTLLEDNLLN--DFDHCYGIVLIVGYVPGLKVETIPLLR-SKEEPEFSMVDKFLMDIRH 185
              +LED   +    +  +G++L VG++PGL+VE IPLLR  K     ++VDKF+MDIR+
Sbjct: 169 ---MLEDFWADAASKNSGFGVLLTVGFLPGLQVEAIPLLRPRKAASRMALVDKFVMDIRN 225

Query: 186 YSASISGCSSPNGIILFGDQNIDIKPILAEMDYGLPEETVIVGDATSCFLFKTGENSQNY 245
           Y+A++SG +SP  +I+FG +  + KP++ ++D+ +  ET I GD  + FL+K+G  S+N 
Sbjct: 226 YAANVSGSTSPALVIMFGGEKAEQKPVMEKLDHAMSRETFIAGDERAQFLYKSGIESRNV 285

Query: 246 NGA--LYFFDAVALVFSRDSDN-SNVPEIQFDITMSTGVLPFGPELKAVSVKEHNADCSL 302
           +G+   Y  DAV LVF+RD    S+V EIQF   +S+GV   GP  K VSVKE   +  L
Sbjct: 286 HGSGNEYISDAVVLVFARDRHRASDVGEIQFHSALSSGVSTIGPRYKVVSVKEIQPETDL 345

Query: 303 LT---ARMEGYDGLLHGEEILEDIKEHIDDKYPYLYIGVIHQR----GSLQFGSRSYMSL 355
            T   AR EG   +L G+ I++DI   + +K   L+IGV  QR    GS        ++ 
Sbjct: 346 TTCLKARREGEQEILGGQRIIDDINNELVNKTE-LFIGVSKQRQCVIGSENPKLLRSLAF 404

Query: 356 YEVLGAEDQFFIVNGVGIKPGDSFIFYHSDSDTASSSSIDVLDGLR--LLNASSC---CG 410
           +EV G + +   V+G GI  GD F FYHSDS  A S++ +V    R   L+ SS     G
Sbjct: 405 HEVKGGDGEHLFVSGDGIGSGDYFHFYHSDSKAALSATSNVSKNFRNLKLDWSSSQLHAG 464

Query: 411 TIGRNVTNANKEVFGGLIFSCFSRSVPLSEDDDGDDDEDDNDVYFESYPFCRNFPETPLA 470
            +G      +KEV GGL+FSC+ R     E   G  + D       S PF  NFP  P+A
Sbjct: 465 GVG------SKEVVGGLVFSCWGR----GESFFGHSNVD-------SSPFLDNFPGIPMA 507

Query: 471 GIFCYGEIGRGRGLTRLINQEEEDCSISGRCLLHHYSTVYLVMSYTIPPLLH 522
           GIFCYGE+GRG  +    + E+++   S  C LH YST+Y+++SYT  PL H
Sbjct: 508 GIFCYGEVGRGFTMLNADDHEDQEEKTSC-CCLHVYSTIYVLVSYTPAPLKH 558

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516535|ref|XP_003526949.1| PREDICTED: F-box/LRR-repeat protein At5g63520-like [Glycine max]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 246/532 (46%), Positives = 328/532 (61%), Gaps = 41/532 (7%)

Query: 5   SAALGNEDLLQHILSRLPALSFASAACVNKSWNKVCNQILSKPKLASALSLSPSLHVAVS 64
           S ++ NEDLLQ+IL+RLP+L FASAACV+KSWN +C++ILS+PKL+SA+SL+PSL  AV+
Sbjct: 28  SLSMLNEDLLQNILARLPSLHFASAACVSKSWNSLCSRILSRPKLSSAISLNPSLPDAVN 87

Query: 65  EVLDKVLSEPIRPHFAIASVGMQSKLAATHQLITARLGSRTPVITNAVTGIIGLDAHLDE 124
           EV+ KVLSEPIRPHFAIA++G     A T  LI   LG   PVI     GI+G DA  DE
Sbjct: 88  EVVHKVLSEPIRPHFAIANIGTGFNTAKTLCLIRKSLGFNIPVIVTVANGIMGRDAVTDE 147

Query: 125 ICEVKWTLL-----EDNLLNDFDHCYGIVLIVGYVPGLKVETIPLLRSKEEPEFSMVDKF 179
             EVKW  L     E++     +   G+VL VGY+PGLKVE +PL R  +  + + VD F
Sbjct: 148 FKEVKWGALFSGFGEESYTRFINE--GLVLTVGYLPGLKVEALPLRRPTKTSQATWVDNF 205

Query: 180 LMDIRHYSASISGCSSPNGIILFGDQNIDIKPILAEMDYGLPEETVIVGDATSCFLF--K 237
           + DI+ YSAS+S    P GIILFG+ + D+K +L ++D+ +P + VIVGD    F F  K
Sbjct: 206 IKDIKEYSASVSSSPFPVGIILFGEASSDMKLVLEKLDHAMPMDMVIVGDERGSFDFVHK 265

Query: 238 TGENSQNYNGALYFFDAVALVFSRDSDNSNVPEIQFDITMSTGVLPFGPELKAVSVKEHN 297
           +G +S+         +AVALVF++D D S +  I+F + +S GV   GP  KA SVK +N
Sbjct: 266 SGNDSRIICSKKGNIEAVALVFAQDRDRS-LGTIRFHVALSNGVSTVGPRYKAASVKSNN 324

Query: 298 ADCS-LLTARMEGYDGLLHGEEILEDIKEHIDD--KYPYLYIGVIHQR----GSLQFGSR 350
           ADCS  LTAR EG    L G+ IL DI   +D+  + P LYIGVI  R    G+ +   R
Sbjct: 325 ADCSTWLTARREGQQENLDGQSILLDINNLLDNHIESPDLYIGVIKHRKLSTGAEKPMPR 384

Query: 351 SYMSLYEVLGAEDQFFIVNGVGIKPGDSFIFYHSDSDTASSSSIDVLDGLRLL----NAS 406
           + ++ + V+G ++++  V+G+GIK GD F FY+SD +TA +S   V D L+ +    N+ 
Sbjct: 385 TCIAYHGVVGGDEEYLYVDGIGIKTGDIFQFYYSDPNTALASLTKVHDALKSIHLEKNSK 444

Query: 407 SCCGTIGRNVTNANKEVFGGLIFSCFSRSVPLSEDDDGDDDEDDNDVYFESYPFCRNFPE 466
           S  G  G N TN    VFGG++F+C+ R     E   G  + D       S PF  NFP 
Sbjct: 445 SSKGD-GDNATN----VFGGIVFACYGR----GESFFGRHNVD-------SSPFLENFPG 488

Query: 467 TPLAGIFCYGEIGRGRGLTRLINQEEEDCSISGRCLLHHYSTVYLVMSYTIP 518
            P++GIFC GE+   R  T +I Q E    IS  C LH YSTVYL MSYT P
Sbjct: 489 VPVSGIFCGGEM--VRPCTTVIGQCEGASPIS--CCLHVYSTVYLAMSYTPP 536

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122064|ref|XP_002318744.1| predicted protein [Populus trichocarpa] gi|222859417|gb|EEE96964.1| predicted protein [Populus trichocarpa]

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 225/473 (47%), Positives = 297/473 (62%), Gaps = 31/473 (6%)

Query: 62  AVSEVLDKVLSEPIRPHFAIASVGMQSKLAATHQLITARLGSRTPVITNAVTGIIGLDAH 121
           AV EV+++VLSEPIRPHFAIA +  +  L   H LI  +LGSR P+ITN  +GIIG+D  
Sbjct: 8   AVKEVIEQVLSEPIRPHFAIACISKEFNLELAHGLIIEKLGSRIPIITNVSSGIIGVDGI 67

Query: 122 LDEICEVKWTLLEDNLLNDFDHC-YGIVLIVGYVPGLKVETIPLLRSKEEPEFSMVDKFL 180
            DE+ E KW       + + D    G+VL+VG++PGLK+ TIPLL+ ++E   ++VDKF+
Sbjct: 68  ADELFEEKWETTSGPNIQESDTAERGLVLLVGFLPGLKIGTIPLLQPRQESN-TLVDKFV 126

Query: 181 MDIRHYSASISGCSSPNGIILFGDQNIDIKPILAEMDYGLPEETVIVGDATSCFLFKTGE 240
           MDI HY+A++S C++P GII+FGD+  D+KPI+A+MD  +PEETVIVGDA++ F+F+TG+
Sbjct: 127 MDILHYTAAVSDCAAPAGIIMFGDKTTDMKPIVAKMDCAMPEETVIVGDASADFIFRTGD 186

Query: 241 NSQNYNGALYFFDAVALVFSRDS-DNSNVPEIQFDITMSTGVLPFGPELKAVSVKEHNAD 299
           +S N       F AVALVF+RD      + EIQF +T STGVLPFGP LKAV V   +++
Sbjct: 187 DSLNQLVYTCCFQAVALVFARDRYKPEGLGEIQFHVTKSTGVLPFGPNLKAVCVVPKDSE 246

Query: 300 CSLLTARMEGYDGLLHGEEILEDIKEHID--DKYPYLYIGVIH--QR----GSLQFGSRS 351
            S L AR+EG DG++    IL +IK+     D +  LYIGV    QR    G L  G   
Sbjct: 247 RSCLFARLEGQDGIMAAGAILNEIKQQFREADTFADLYIGVTKETQRTSDSGILTPGKS- 305

Query: 352 YMSLYEVLGAEDQFFIVNGVGIKPGDSFIFYHSDSDTASSSSIDVLDGLRLLNASSCCGT 411
            +  Y+V+G  + +F VNG+GI+ GDSF+FY SDS TASSS     + L  L A      
Sbjct: 306 -LDFYKVIGGGEYYFTVNGIGIRTGDSFLFYQSDSATASSSCDHAFNKLLALKAELKSKN 364

Query: 412 IGRNVTNANK----EVFGGLIFSCFSRSVPLSEDDDGDDDEDDNDVYFESYPFCRNFPET 467
             R    A+K    EV GG IFSC+ R                 D + +SYPFC NFP  
Sbjct: 365 YLRLSNLADKDDKEEVLGGFIFSCYHRGESFF-----------GDTFVDSYPFCNNFPTA 413

Query: 468 PLAGIFCYGEIGRGRGLTRLINQEEEDCSISGRCLLHHYSTVYLVMSYTIPPL 520
           P+AG+FC GEI RG     L+N+E +D   S RC +H YST+YLVMSY  PPL
Sbjct: 414 PVAGLFCRGEIARGP--KSLMNEEYDD-ETSPRCCVHVYSTIYLVMSYLPPPL 463

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488987|gb|ABK96301.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 233/531 (43%), Positives = 326/531 (61%), Gaps = 38/531 (7%)

Query: 10  NEDLLQHILSRLPALSFASAACVNKSWNKVCNQILSKPKLASALSLSPSLHVAVSEVLDK 69
           NEDL Q+IL R+PALSFASAACV+KSWN+ CNQIL KPKLAS+ SL+P   VA+ EV++K
Sbjct: 23  NEDLFQNILKRIPALSFASAACVSKSWNRNCNQILYKPKLASSFSLNPVQKVALEEVVNK 82

Query: 70  VLSEPIRPHFAIASV-GMQSKLAATHQLITARLGSRTPVITNAVTGIIGLDAHLDEICEV 128
           VLSEPIRP FAIA+V G    L+     + A+LGS+TP+I +   GI+G DA  DE  EV
Sbjct: 83  VLSEPIRPQFAIANVIGSGVHLSGMLDFLAAKLGSKTPIIVSCAGGIMGRDAVTDEYKEV 142

Query: 129 KWTLLEDNLLNDF-DHCYGIVLIVGYVPGLKVETIPLLRSKEEPEFSMVDKFLMDIRHYS 187
              ++ED  ++   +  +GI+L VG++PGLKV+ IPLLR ++    +MVDKF+MDIR+Y+
Sbjct: 143 ---MIEDFWVDGASNSSFGIMLSVGFLPGLKVDAIPLLRPRKARGVAMVDKFVMDIRNYA 199

Query: 188 ASISGCSSPNGIILFGDQNIDIKPILAEMDYGLPEETVIVGDATSCFLFKTGENSQN-YN 246
           A +S  +SP+ II+FG +  D KP++ ++D+ +  ET++VGD  + FL+++G  S+N Y 
Sbjct: 200 ALVSDSTSPSLIIMFGSEKTDQKPVMEKLDHAMSRETIVVGDERAQFLYRSGIESRNVYY 259

Query: 247 GAL--YFFDAVALVFSRDSDN-SNVPEIQFDITMSTGVLPFGPELKAVSVKEHNADCSL- 302
           G++  YF DAVALVF+RD +  S   EI F   +S+GV   GP  KAVS  E  ++  L 
Sbjct: 260 GSVDHYFSDAVALVFARDQNRPSGTGEIHFHSALSSGVSAIGPRFKAVSANEIESETGLS 319

Query: 303 --LTARMEGYDGLLHGEEILEDIKEHIDDKYPYLYIGVIHQR----GSLQFGSRSYMSLY 356
             LT R E    +L G+ I++DI   + ++   L+IGV  QR    G  +      ++ +
Sbjct: 320 TWLTVRREAEQEILGGQRIIDDINNELGNQTK-LFIGVSEQRKCFVGPEKPRQMRSLAFH 378

Query: 357 EVLGAEDQFFIVNGVGIKPGDSFIFYHSDSDTASSSSIDVLDGLRLLNA----SSCCGTI 412
           EV+G +++   V+GVGIK GD F  YH D   A SS  ++    R L       SC    
Sbjct: 379 EVMGGDEEHLFVDGVGIKTGDYFHLYHPDPSAALSSCSNISKNFRNLKLDWSFRSCQLHA 438

Query: 413 GRNVTNANKEVFGGLIFSCFSRSVPLSEDDDGDDDEDDNDVYFESYPFCRNFPETPLAGI 472
            R V    KEV GG +F+C+ R         G+     N+V  +S PF  NFP   +AGI
Sbjct: 439 ARGV--GEKEVIGGFVFACWGR---------GESFFGHNNV--DSSPFLDNFPGVLMAGI 485

Query: 473 FCYGEIGRGRGLTRLINQEEEDCSISGRCL-LHHYSTVYLVMSYTIPPLLH 522
           F YGEIGRG     ++N +E    +   C  +H YSTVYL++SYT  P+ H
Sbjct: 486 FTYGEIGRG---FSILNTDESGQEVKTLCFCVHVYSTVYLLVSYTPAPIEH 533

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FMV0	FBL91_ARATH	No assigned EC number	0.3924	0.9099	0.8979	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	522
pfam10442	137	pfam10442, FIST_C, FIST C domain	5e-09
pfam12937	47	pfam12937, F-box-like, F-box-like	3e-04
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	8e-04
pfam00646	48	pfam00646, F-box, F-box domain	9e-04

>gnl|CDD|220757 pfam10442, FIST_C, FIST C domain

 Score = 54.2 bits (131), Expect = 5e-09
 Identities = 27/146 (18%), Positives = 42/146 (28%), Gaps = 49/146 (33%)

Query: 336 IGVIHQRGSLQFGSRSYMSLYEVLGAEDQFFIVNGVGIKPGDSFIFYHSDSDTASSSSID 395
           +GV  + GSL F                         +  G+       D++        
Sbjct: 41  LGVDPEDGSLTFAGD----------------------VPEGEELQLMLRDAEDLIEDLRR 78

Query: 396 VLDGLRLLNASSCCGTIGRNVTNANKEVFGGLIFSCFSRSVPLSEDDDGDDDEDDNDVYF 455
            L+  R                   +   G L+FSC  R + L  + D + +        
Sbjct: 79  ALEAAR----------------EGGRPPAGALLFSCIGRGLLLFGEPDEELEA------- 115

Query: 456 ESYPFCRNFPETPLAGIFCYGEIGRG 481
                     + P+ G F YGEIG G
Sbjct: 116 ----VREVLGDAPVIGFFTYGEIGPG 137

The FIST C domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya. Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids. Length = 137

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 7/31 (22%), Positives = 14/31 (45%)

Query: 11 EDLLQHILSRLPALSFASAACVNKSWNKVCN 41
          +++L  I S L        A V + W ++ +
Sbjct: 6  DEILLQIFSYLDPRDLLRLALVCRRWRELAS 36

This is an F-box-like family. Length = 47

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 36.6 bits (86), Expect = 8e-04
 Identities = 7/31 (22%), Positives = 16/31 (51%)

Query: 11 EDLLQHILSRLPALSFASAACVNKSWNKVCN 41
          +++L+ ILS+L          V++ W  + +
Sbjct: 3  DEILEEILSKLDPKDLLRLRKVSRKWRSLID 33

Length = 41

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 36.8 bits (86), Expect = 9e-04
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 11 EDLLQHILSRLPALSFASAACVNKSWNKVCN 41
          +DLL  ILSRL        + V+K W  + +
Sbjct: 8  DDLLLEILSRLDPKDLLRLSLVSKRWRSLVD 38

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	522
COG4398	389	Uncharacterized protein conserved in bacteria [Fun	100.0
COG3287	379	Uncharacterized conserved protein [Function unknow	100.0
PF08495	198	FIST: FIST N domain; InterPro: IPR013702 The FIST	99.93
PF10442	136	FIST_C: FIST C domain; InterPro: IPR019494 This en	99.43
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.28
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	97.95
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	97.91
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.02
KOG4341	483	consensus F-box protein containing LRR [General fu	91.35
KOG2997	366	consensus F-box protein FBX9 [General function pre	90.38
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	90.26
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	89.94

>COG4398 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=100.00  E-value=1.1e-65  Score=504.82  Aligned_cols=358  Identities=20%  Similarity=0.277  Sum_probs=325.4

Q ss_pred             cCeEEEEEecCCCHHHHHHHHHHHHhCCCC-CCcEEEEEecC-CC--CHHHHHHHHHHHhCCCCCcEEEee-ccEEcCCc
Q 036974           46 KPKLASALSLSPSLHVAVSEVLDKVLSEPI-RPHFAIASVGM-QS--KLAATHQLITARLGSRTPVITNAV-TGIIGLDA  120 (522)
Q Consensus        46 ~~~~~sa~S~~~d~~~A~~E~~~ql~~~~~-~p~l~lvF~S~-~y--d~~~Ll~~L~~~l~~~~~~vvGCt-aGiIg~~~  120 (522)
                      +|+|..|.|+.|+++.|+.|++.|+..++. ..++.++|.|+ .|  +..+++.++.+.+.  +|.+|||. .|||+...
T Consensus         4 ~~~w~nAlstRpsle~A~~ea~~~a~~~l~g~~~l~~v~l~Sra~~~~aa~vlp~v~e~ls--~p~lIGC~~~giia~~~   81 (389)
T COG4398           4 GVGWSNALSTRPSLERAAVEAAAQARDELAGEAPLLAVLLGSRAHTDRAADVLPAVQEMLS--PPALIGCIAQGIVAGRH   81 (389)
T ss_pred             cceeecccccchhHHHHHHHHHHHhhhcccCCCCEEEEEecccchhhhHHHHHHHHHHhcC--ccceeeecccceeeeee
Confidence            689999999999999999999999998765 66899999999 56  78899999999998  99999999 99997654


Q ss_pred             cccchhheehhhhcccccCCCCCCceEEEEEecCCCceEEEEEecCCCCCchHHHHHHHHhhhhhcccCCCCCCCceEEE
Q 036974          121 HLDEICEVKWTLLEDNLLNDFDHCYGIVLIVGYVPGLKVETIPLLRSKEEPEFSMVDKFLMDIRHYSASISGCSSPNGII  200 (522)
Q Consensus       121 ~~~~~~Eve~~~~~~~~~~~~~~~~~i~l~~~~lpg~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  200 (522)
                            |+|             +++++++|+++  |+.+++|+++..+. .+.+|++..         ++.+......|+
T Consensus        82 ------ElE-------------~E~A~s~~lA~--Gv~~~~F~l~~~~t-~~~a~i~~~---------~~d~t~~~~~il  130 (389)
T COG4398          82 ------ELE-------------DEPAVSVWLAS--GVAAETFHLDFVRT-GSGALITGY---------RFDRTARDLHLL  130 (389)
T ss_pred             ------eec-------------CCceEEEEecc--CcccceeecccccC-CCcceEEee---------ecCCCCCCceEE
Confidence                  999             99999999997  99999999776653 446888776         455556677899


Q ss_pred             EeCCCCCChHHHHHHHhhcCCCccEEEeecCC------ceeeeccCCCCCCCCceeeCceEEEEEeecCCCCCCCceeEE
Q 036974          201 LFGDQNIDIKPILAEMDYGLPEETVIVGDATS------CFLFKTGENSQNYNGALYFFDAVALVFSRDSDNSNVPEIQFD  274 (522)
Q Consensus       201 l~Dg~s~~~e~vl~~L~~al~~~pv~GG~Asd------~~~f~~~~~~~~~~g~~~~~gAVgl~~~~~~~~~~~g~i~f~  274 (522)
                      |.|+++...+.+++.|+.+||+..++||.+|+      +++|++        +.++.+|.|++.+        .| +...
T Consensus       131 L~dp~t~~~n~li~~l~~~~PgttvvGG~~Sgg~~~G~~~Lf~~--------~~~~~~G~vGv~L--------~G-i~l~  193 (389)
T COG4398         131 LPDPYTFPSNLLIEHLNTDLPGTTVVGGVVSGGRRRGDTRLFRD--------HDVLTSGVVGVRL--------PG-IRLV  193 (389)
T ss_pred             ccCCcccchHHHhhccCcCCCCceEEccEeecCccCCceEEeec--------CCcccCceeEEee--------cc-ceec
Confidence            99999999999999999999999999999987      666764        4799999999999        99 9999


Q ss_pred             EeeecCceecCCcEEEEeeccCCCcc-eEEeeccccCCCccc-hHHHHhhhhhccccc-CCceEEEEeccCCCccccccc
Q 036974          275 ITMSTGVLPFGPELKAVSVKEHNADC-SLLTARMEGYDGLLH-GEEILEDIKEHIDDK-YPYLYIGVIHQRGSLQFGSRS  351 (522)
Q Consensus       275 ~~vsqG~~PiG~~~~VT~~d~~~a~r-vV~Eldge~~~~al~-~~~~l~~l~~~~~~~-~~~l~iGv~~~~~~~~~~~~~  351 (522)
                      ..++|||||||++|+||     +++| +|.||++   +|+|. |++++..|+++++++ ++.|+|||++++.+..+.   
T Consensus       194 ~vVsQGCRPIGeP~iVt-----~a~~niItEl~g---r~PL~~Lr~ii~~lsp~er~L~~~~L~iGi~~DE~~~~~~---  262 (389)
T COG4398         194 PVVSQGCRPIGEPYIVT-----GADGNIITELGG---RPPLQRLREIVEGLSPDERALVSHGLQIGIVVDEHLAAPG---  262 (389)
T ss_pred             chhccCcccCCCceEee-----ccCceeEeecCC---CChHHHHHHHhhccChhhHHHHhcCceEEEEehhhhcCCC---
Confidence            99999999999999999     9999 9999988   58899 999999999999999 999999999999976666   


Q ss_pred             ccceeeecCCcceEEEEc-------------CcccCCCCEEEEEecCHHHHhccchhhHHHHHHhhhccCCCcccccccC
Q 036974          352 YMSLYEVLGAEDQFFIVN-------------GVGIKPGDSFIFYHSDSDTASSSSIDVLDGLRLLNASSCCGTIGRNVTN  418 (522)
Q Consensus       352 ~~~~~~~~ggd~~flvR~-------------~~~v~~G~~~~f~~rd~~~A~~~~~~~~~dl~~l~~~~~~~~~~~~~~~  418 (522)
                              +||  |+||+             |+-|++|+++||++||++++.+       ||+-+++++.     ++.  
T Consensus       263 --------qGD--FlIR~lLG~DPs~GaIaIgd~Vr~G~~lQF~~RD~~as~~-------dL~~l~er~~-----~e~--  318 (389)
T COG4398         263 --------QGD--FLIRGLLGADPSTGAIAIGEVVRVGATLQFQVRDAAAADK-------DLRLLVERAA-----AEL--  318 (389)
T ss_pred             --------CCc--eEeeeccccCCCCCceeecceeccCcEEEEEEcccccchh-------HHHHHHHHHH-----hhC--
Confidence                    889  99999             7899999999999999999999       9998888764     333  


Q ss_pred             CCCceeEEEEEEeCCCCCCCCCCCCCCCCCCCCCcccchhhHHhhCCCCCeeeeccCcccCCCCccccccccccccccCC
Q 036974          419 ANKEVFGGLIFSCFSRSVPLSEDDDGDDDEDDNDVYFESYPFCRNFPETPLAGIFCYGEIGRGRGLTRLINQEEEDCSIS  498 (522)
Q Consensus       419 ~~~~p~gaL~FsC~gRG~~lfg~~~~~~~~~~~~~~~e~~~~~~~l~~~PlaGff~~GEIg~~~~~~~~~~~~~~~~~~~  498 (522)
                       +.++.|+|+|||+|||..|||           .+|+|+++|.+.|+++|++||||+|||||   +    +         
T Consensus       319 -~~~avGaLmFsC~GRG~~m~G-----------~p~~Ds~~~~~~~~gipl~GFF~~GEIGp---V----~---------  370 (389)
T COG4398         319 -PGRAVGALLFTCNGRGRRMFG-----------VPDHDASTIEELLGGIPLAGFFAAGEIGP---V----A---------  370 (389)
T ss_pred             -CCccceeEEEEecCccccccC-----------CCCccHHHHHHHhCCCcccceeecCcccc---c----c---------
Confidence             577899999999999999999           99999999999999999999999999999   7    7         


Q ss_pred             CCceeeeeeEEEEEEecC
Q 036974          499 GRCLLHHYSTVYLVMSYT  516 (522)
Q Consensus       499 ~~~~lhgyT~v~~l~~~~  516 (522)
                      ++|+|||||+++++|..+
T Consensus       371 gr~~LHG~Ts~~ai~~~~  388 (389)
T COG4398         371 GRNALHGFTASMALFVDD  388 (389)
T ss_pred             chhhhhccceeeEEEeec
Confidence            899999999999999764

>COG3287 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=6.4e-35  Score=301.96  Aligned_cols=343  Identities=16%  Similarity=0.181  Sum_probs=258.0

Q ss_pred             eEEEEEecCCCHHHHHHHHHHHHhCCCCCCcEEEEEecCCC-CHHHHHHHHHHHhCCCCCcEEEee-ccEEcCCccccch
Q 036974           48 KLASALSLSPSLHVAVSEVLDKVLSEPIRPHFAIASVGMQS-KLAATHQLITARLGSRTPVITNAV-TGIIGLDAHLDEI  125 (522)
Q Consensus        48 ~~~sa~S~~~d~~~A~~E~~~ql~~~~~~p~l~lvF~S~~y-d~~~Ll~~L~~~l~~~~~~vvGCt-aGiIg~~~~~~~~  125 (522)
                      ...++.+...|....++|+.+++.+.  +++++++|.++.+ ++..|.++|++.+| ++ .++||| +|+|+++++    
T Consensus         4 ~~~~~v~~~~d~~~v~~e~~~~~~~~--~~~~~~ifF~~~~~~~~~l~~~l~~~~p-g~-~liGCSTaGeitp~g~----   75 (379)
T COG3287           4 TLKRGVSDGKDAESVIEEMARQLGSD--RSDFVLIFFSPERDEHVQLASALKQAFP-GI-CLIGCSTAGEITPDGF----   75 (379)
T ss_pred             eeeccCcCcCCHHHHHHHHHHhhCcC--CCCeEEEEeccccccHHHHHHHHHhhCC-CC-eEeccccCceEccccc----
Confidence            34466678889999999999999876  8999998888876 66799999999999 35 599999 999998887    


Q ss_pred             hheehhhhcccccCCCCCCceEEEEEecCCCceEEE-EEecCCCC---CchHHHHHHHHhhhhhcccCCCCCCCceEEEE
Q 036974          126 CEVKWTLLEDNLLNDFDHCYGIVLIVGYVPGLKVET-IPLLRSKE---EPEFSMVDKFLMDIRHYSASISGCSSPNGIIL  201 (522)
Q Consensus       126 ~Eve~~~~~~~~~~~~~~~~~i~l~~~~lpg~~v~~-~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll  201 (522)
                                       .++++++|++..+.+.+-. ..+.+.+.   .+..+.++.+..+.+   ...+...+.++|+|
T Consensus        76 -----------------~~~~V~il~~~~~~~a~~s~~~~~~~s~~~~~~i~~~~E~l~~~~~---~~~~~~r~~~~l~f  135 (379)
T COG3287          76 -----------------KNGSVLLLAFDSSEFAALSTALVDRESPVSRDPIAEAIERLIRDKR---DRLSPTRPVLALTF  135 (379)
T ss_pred             -----------------cCCeEEEEEechHHHHHhhhhhccccCcccchhHHHHHHHHHhccc---ccccccCceEEEEE
Confidence                             7899999999888766655 44444432   333344444433221   11333456899999


Q ss_pred             eCCCCCChHHHHH-HHhhcCCCccEEEeecCCceeeeccCCCCCCCCceeeCceEEEEEeecCCCCCCCceeEEEeeecC
Q 036974          202 FGDQNIDIKPILA-EMDYGLPEETVIVGDATSCFLFKTGENSQNYNGALYFFDAVALVFSRDSDNSNVPEIQFDITMSTG  280 (522)
Q Consensus       202 ~Dg~s~~~e~vl~-~L~~al~~~pv~GG~Asd~~~f~~~~~~~~~~g~~~~~gAVgl~~~~~~~~~~~g~i~f~~~vsqG  280 (522)
                      +|+++..++.+++ .....+..+|+|||+|+|++.|.+  ++...+|.++.++||.+++        .+.+.|..+.++|
T Consensus       136 ~dgl~~~ee~l~~~~~~~~~~~iPi~GGsAaD~~~~e~--t~v~~~g~v~~~aavi~l~--------~t~l~f~~~~~~g  205 (379)
T COG3287         136 IDGLSTSEEVLLDGAVLAALETIPIFGGSAADDLEFER--TYVFDEGEVHEDAAVILLF--------GTQLKFGHGFAHG  205 (379)
T ss_pred             eccCCcchhhhhhhhhcccccceeeeccccCCCCccce--EEEEEccccccCceEEEEe--------cceEEeecccccc
Confidence            9999999999999 777888999999999999766653  4555568999999999999        9999999999999


Q ss_pred             ceecCCcEEEEeeccCCCcc-eEEeeccccCCCccc-hHHHHhhhhhccccc---CCceEEEEeccCCCcccccccccce
Q 036974          281 VLPFGPELKAVSVKEHNADC-SLLTARMEGYDGLLH-GEEILEDIKEHIDDK---YPYLYIGVIHQRGSLQFGSRSYMSL  355 (522)
Q Consensus       281 ~~PiG~~~~VT~~d~~~a~r-vV~Eldge~~~~al~-~~~~l~~l~~~~~~~---~~~l~iGv~~~~~~~~~~~~~~~~~  355 (522)
                      |.|++.+++||     +++. +|+|||||   ||.+ +++.++ -.++....   ...+..                   
T Consensus       206 ~~Pt~~~~~VT-----ka~~~vV~EiDge---PA~e~Y~e~vg-~~e~l~~~~~~~~pl~~-------------------  257 (379)
T COG3287         206 FVPTDKTGVVT-----KADGDVVYEIDGE---PAAEEYAEVVG-AVEELDPEMFIPNPLGV-------------------  257 (379)
T ss_pred             eEEccceEEEE-----eecCcEEEEeCCC---cHHHHHHHHhC-chhhcChhHhcccceEE-------------------
Confidence            99999999999     6666 99999996   5655 566655 11111111   122211                   


Q ss_pred             eeecCCcceEEEEcCcccCCCCEEEEEecCH-HHHh---ccchhhHHHHHHhhhccCCCcccccccCCCCceeEEEEEEe
Q 036974          356 YEVLGAEDQFFIVNGVGIKPGDSFIFYHSDS-DTAS---SSSIDVLDGLRLLNASSCCGTIGRNVTNANKEVFGGLIFSC  431 (522)
Q Consensus       356 ~~~~ggd~~flvR~~~~v~~G~~~~f~~rd~-~~A~---~~~~~~~~dl~~l~~~~~~~~~~~~~~~~~~~p~gaL~FsC  431 (522)
                       .+.+  ..|+||....+.....+.|+.+.. +.+.   .+..+|...+++.+.+..     +..   ++++.+.|.|+|
T Consensus       258 -~~~~--~~y~vr~p~~~~e~~~~~f~~~~i~~~v~lr~~~~~~~~~~~e~~~~~a~-----~~~---~~~~~~vl~f~C  326 (379)
T COG3287         258 -RDLG--PLYYVRAPQFVDEEGGLIFLSAAIPLGVVLRLGETGGIERVTERALRRAF-----EDL---PKAPALVLVFDC  326 (379)
T ss_pred             -EeCC--CcEEEeCcceeccccceEEeeccCCCccEEEeecCCcccHHHHHHHHHHH-----hhc---cCCCceEEEEeh
Confidence             1111  359999988888888888888443 3222   222335667777776543     332   455999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCcccchhhHHhhCCCCCeeeeccCcccCC
Q 036974          432 FSRSVPLSEDDDGDDDEDDNDVYFESYPFCRNFPETPLAGIFCYGEIGR  480 (522)
Q Consensus       432 ~gRG~~lfg~~~~~~~~~~~~~~~e~~~~~~~l~~~PlaGff~~GEIg~  480 (522)
                      .+|  .++-           +.+.+.+.+++.+|+=|++||+||||+++
T Consensus       327 ~~R--~l~~-----------~~~~~~~~~~e~l~~~~~vGf~tyGE~~~  362 (379)
T COG3287         327 ALR--RLFL-----------DTDKERQPLKEQLPEDPCVGFNTYGEQGP  362 (379)
T ss_pred             hhh--hhhh-----------hhhhhhhHHHHhcccCceecccccccccc
Confidence            999  4555           67889999999999889999999999999

>PF08495 FIST: FIST N domain; InterPro: IPR013702 The FIST N domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya

Probab=99.93  E-value=2.1e-24  Score=205.88  Aligned_cols=192  Identities=18%  Similarity=0.169  Sum_probs=149.3

Q ss_pred             CCcEEEEEecCCCCHHH-HHHHHHHHhCCCCCcEEEee-ccEEcC--CccccchhheehhhhcccccCCCCCCceEEEEE
Q 036974           76 RPHFAIASVGMQSKLAA-THQLITARLGSRTPVITNAV-TGIIGL--DAHLDEICEVKWTLLEDNLLNDFDHCYGIVLIV  151 (522)
Q Consensus        76 ~p~l~lvF~S~~yd~~~-Ll~~L~~~l~~~~~~vvGCt-aGiIg~--~~~~~~~~Eve~~~~~~~~~~~~~~~~~i~l~~  151 (522)
                      ||+|+++|+|+.|+.+. +.+.|++.+|  ..+++||| +|+|..  .++                     ...+++++.
T Consensus         1 ~p~lvi~f~s~~~~~~~~i~~~l~~~~p--~~~iiG~st~g~i~~~~~~~---------------------~~~~v~~~~   57 (198)
T PF08495_consen    1 RPDLVILFCSPEYDEEAKILEALRERLP--DAPIIGCSTAGEICGGNEGY---------------------SDDGVSLLG   57 (198)
T ss_pred             CCEEEEEEecchhhhhHHHHHHHHHHCC--CCcEEEEccCchhCCCcCCC---------------------CCccEEEEE
Confidence            69999999999998888 9999999999  55699999 999999  443                     677888888


Q ss_pred             ecCCCceEEEEEecCCCCCchHHHHHHHHhhhhhcccCCCCCCCceEEEEeCCCCCChHHHHHHH-hhcCCCccEEEeec
Q 036974          152 GYVPGLKVETIPLLRSKEEPEFSMVDKFLMDIRHYSASISGCSSPNGIILFGDQNIDIKPILAEM-DYGLPEETVIVGDA  230 (522)
Q Consensus       152 ~~lpg~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~Dg~s~~~e~vl~~L-~~al~~~pv~GG~A  230 (522)
                      +..+.+++........+..+.............    ........++|+|+|+++..++.+++.| +...++.|+|||+|
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~d~~~~~~~~~l~~l~~~~~~~~~i~GG~a  133 (198)
T PF08495_consen   58 FSSSEVRVFASLIDPFSEDPIEAAREALRDLVK----SLDSDPSPFLLLFADGLSSSEEELLEGLYSSVGPDIPIFGGSA  133 (198)
T ss_pred             ecCCcEEEEEEEccccCCCcHHHHHHHHHHHHh----hccccCCcEEEEEeCCCCcCHHHHHHHHHHhcCCCceEEEEEC
Confidence            766666666665544332222122211111111    1111226799999999999999999999 88889999999999


Q ss_pred             CCceeeeccCCCCCCCCceeeCceEEEEEeecCCCCCCCceeEEEeeecCceecCCcEEEEeeccCCCcc-eEEeecccc
Q 036974          231 TSCFLFKTGENSQNYNGALYFFDAVALVFSRDSDNSNVPEIQFDITMSTGVLPFGPELKAVSVKEHNADC-SLLTARMEG  309 (522)
Q Consensus       231 sd~~~f~~~~~~~~~~g~~~~~gAVgl~~~~~~~~~~~g~i~f~~~vsqG~~PiG~~~~VT~~d~~~a~r-vV~Eldge~  309 (522)
                      ++...+..  +..+.+++++++++|+++|        .+++++.+.++|||+|+|++|+||     ++++ +|+|||++|
T Consensus       134 ~~~~~~~~--~~v~~~~~~~~~g~v~~~~--------~~~l~~~~~~~~g~~p~g~~~~VT-----~a~~~~I~eld~~P  198 (198)
T PF08495_consen  134 GDNLDFER--TYVFANGQVYSDGAVVVAF--------SGSLKIDSFVSHGWEPIGKPMTVT-----KAEGNIIYELDGRP  198 (198)
T ss_pred             CCCCcCCc--eEEEEeeeeccCcEEEEEE--------cCCceEEEEEecCeEeCCCCEEEE-----EecCCEEEEECCcC
Confidence            99554432  2333347999999999999        999999999999999999999999     7777 999999965

Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].

>PF10442 FIST_C: FIST C domain; InterPro: IPR019494 This entry represents a novel sensory domain, designated FIST C (short for F-box and intracellular signal transduction, C-terminal), which is present in signal transduction proteins from bacteria, archaea and eukaryotes

Probab=99.43  E-value=3.6e-13  Score=122.04  Aligned_cols=82  Identities=22%  Similarity=0.340  Sum_probs=67.5

Q ss_pred             CcccCCCCEEEEEecCHHHHhccchhhHHHHHHhhhccCCCcccccccCCCCceeEEEEEEeCCCCCCCCCCCCCCCCCC
Q 036974          370 GVGIKPGDSFIFYHSDSDTASSSSIDVLDGLRLLNASSCCGTIGRNVTNANKEVFGGLIFSCFSRSVPLSEDDDGDDDED  449 (522)
Q Consensus       370 ~~~v~~G~~~~f~~rd~~~A~~~~~~~~~dl~~l~~~~~~~~~~~~~~~~~~~p~gaL~FsC~gRG~~lfg~~~~~~~~~  449 (522)
                      ...|++|+.|+|+.++++...+       .+++.+....           ..+|.++|+|+|++| ..++++        
T Consensus        53 ~~~v~eG~~v~l~~~~~~~~~~-------~~~~~~~~~~-----------~~~p~~~l~f~C~~R-~~~l~~--------  105 (136)
T PF10442_consen   53 AGDVPEGSEVQLMEGDPEDIIE-------SAEEALEKAP-----------GPPPEGALIFSCIGR-RLFLGE--------  105 (136)
T ss_pred             eeecCCCCEEEEEcCCHHHHHH-------HHHHHHHhhc-----------CCCceEEEEEECCCC-HHHhCc--------
Confidence            4579999999999999998888       4555444332           467999999999999 445562        


Q ss_pred             CCCcccchhhHHhhCC-CCCeeeeccCcccCC
Q 036974          450 DNDVYFESYPFCRNFP-ETPLAGIFCYGEIGR  480 (522)
Q Consensus       450 ~~~~~~e~~~~~~~l~-~~PlaGff~~GEIg~  480 (522)
                        ..+.|.+.+++.+| ++|++||||||||+|
T Consensus       106 --~~~~e~~~~~~~~~~~~p~~Gf~t~GEi~~  135 (136)
T PF10442_consen  106 --RFDEELEAFQEILGGDAPFIGFYTYGEIGP  135 (136)
T ss_pred             --chHHHHHHHHHHhCCCCCEEEEcccccccc
Confidence              66778999999998 499999999999998

The chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.28  E-value=6.6e-07  Score=66.78  Aligned_cols=37  Identities=19%  Similarity=0.369  Sum_probs=32.5

Q ss_pred             ccCCcHHHHHHHHhhCChhhhhhhhhhhHHHHHHHHH
Q 036974            6 AALGNEDLLQHILSRLPALSFASAACVNKSWNKVCNQ   42 (522)
Q Consensus         6 ~~~~~~~~~~~il~~~p~~~~~~~~~v~~~w~~~~~~   42 (522)
                      +..+|+||+.+|+++||.++++++++|||.||++++.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~   37 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAND   37 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTC
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCC
Confidence            4679999999999999999999999999999999953

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=97.95  E-value=5.1e-06  Score=61.82  Aligned_cols=39  Identities=23%  Similarity=0.314  Sum_probs=33.1

Q ss_pred             ccCCcHHHHHHHHhhCChhhhhhhhhhhHHHHHHHHHHh
Q 036974            6 AALGNEDLLQHILSRLPALSFASAACVNKSWNKVCNQIL   44 (522)
Q Consensus         6 ~~~~~~~~~~~il~~~p~~~~~~~~~v~~~w~~~~~~il   44 (522)
                      |..+|+|++++|+++||.+++++.++|||.||++++...
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~   41 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPR   41 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHH
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCC
Confidence            567999999999999999999999999999999998753

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=97.91  E-value=1.3e-05  Score=57.03  Aligned_cols=34  Identities=24%  Similarity=0.517  Sum_probs=32.0

Q ss_pred             CcHHHHHHHHhhCChhhhhhhhhhhHHHHHHHHH
Q 036974            9 GNEDLLQHILSRLPALSFASAACVNKSWNKVCNQ   42 (522)
Q Consensus         9 ~~~~~~~~il~~~p~~~~~~~~~v~~~w~~~~~~   42 (522)
                      +|+||+.+|+++||.++++++++|||.|+++++.
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~   34 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS   34 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            6899999999999999999999999999998864

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.02  E-value=0.0052  Score=63.40  Aligned_cols=40  Identities=20%  Similarity=0.183  Sum_probs=37.3

Q ss_pred             CCcccCCcHHHHHHHHhhCChhhhhhhhhhhHHHHHHHHH
Q 036974            3 GGSAALGNEDLLQHILSRLPALSFASAACVNKSWNKVCNQ   42 (522)
Q Consensus         3 ~~~~~~~~~~~~~~il~~~p~~~~~~~~~v~~~w~~~~~~   42 (522)
                      |..|..+|+||++.|++.||-|.|.+++-|||.||+|++.
T Consensus        95 gv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~d  134 (419)
T KOG2120|consen   95 GVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASD  134 (419)
T ss_pred             CCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccc
Confidence            5678999999999999999999999999999999998864

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=91.35  E-value=0.17  Score=54.49  Aligned_cols=39  Identities=26%  Similarity=0.235  Sum_probs=35.9

Q ss_pred             cCCcHHHHHHHHhhCChhhhhhhhhhhHHHHHHHHHHhc
Q 036974            7 ALGNEDLLQHILSRLPALSFASAACVNKSWNKVCNQILS   45 (522)
Q Consensus         7 ~~~~~~~~~~il~~~p~~~~~~~~~v~~~w~~~~~~il~   45 (522)
                      -.+|+|++..|+++|+.|++.+++.||+.|+.+|-....
T Consensus        73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~  111 (483)
T KOG4341|consen   73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSC  111 (483)
T ss_pred             ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccc
Confidence            368999999999999999999999999999999977655

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=90.38  E-value=0.21  Score=51.96  Aligned_cols=37  Identities=14%  Similarity=0.230  Sum_probs=32.4

Q ss_pred             ccCCcHHHHHHHHhhCCh-----hhhhhhhhhhHHHHHHHHH
Q 036974            6 AALGNEDLLQHILSRLPA-----LSFASAACVNKSWNKVCNQ   42 (522)
Q Consensus         6 ~~~~~~~~~~~il~~~p~-----~~~~~~~~v~~~w~~~~~~   42 (522)
                      |.-||+|||-.||.++=-     .||-++|||||=|+.+|+.
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~  148 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARD  148 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcC
Confidence            577999999999987654     8999999999999999863

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=90.26  E-value=0.25  Score=51.90  Aligned_cols=35  Identities=31%  Similarity=0.478  Sum_probs=31.3

Q ss_pred             cCCc----HHHHHHHHhhCChhhhhhhhhhhHHHHHHHH
Q 036974            7 ALGN----EDLLQHILSRLPALSFASAACVNKSWNKVCN   41 (522)
Q Consensus         7 ~~~~----~~~~~~il~~~p~~~~~~~~~v~~~w~~~~~   41 (522)
                      .++|    ++|.+|||++|+++||..+-=|||.|+++-.
T Consensus        76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~  114 (499)
T KOG0281|consen   76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLS  114 (499)
T ss_pred             HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhc
Confidence            3567    9999999999999999999999999997654

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=89.94  E-value=0.26  Score=52.64  Aligned_cols=40  Identities=20%  Similarity=0.283  Sum_probs=34.7

Q ss_pred             cccCCcHHHHHHHHhhCCh-hhhhhhhhhhHHHHHHHHHHh
Q 036974            5 SAALGNEDLLQHILSRLPA-LSFASAACVNKSWNKVCNQIL   44 (522)
Q Consensus         5 ~~~~~~~~~~~~il~~~p~-~~~~~~~~v~~~w~~~~~~il   44 (522)
                      +-+-+|+||+..|.++||. .++.+..+|||+||..+.+.-
T Consensus         3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~   43 (373)
T PLN03215          3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG   43 (373)
T ss_pred             ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc
Confidence            3567999999999999965 479999999999999888753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	522
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 9e-09
 Identities = 65/457 (14%), Positives = 130/457 (28%), Gaps = 140/457 (30%)

Query: 1   MVG-GSAALGNEDLLQH-ILSRLPA----LSFASAACVN---KSWNKVCNQILSKPKLAS 51
           ++G G   +  +  L + +  ++      L+  +        +   K+  QI   P   S
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI--DPNWTS 215

Query: 52  ALSLSPSLHVAVSE-------------------VLDKVLSEPIRPHFAIASVGMQSKLAA 92
               S ++ + +                     VL  V +      F +       K+  
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL-----SCKI-- 268

Query: 93  THQLITARLGSRTPVITNAVTGIIGLDAHLDEICEVKWTLLEDNLLNDFDHCYGIVLIVG 152
              L+T R    T  ++ A T  I LD           TL  D + +             
Sbjct: 269 ---LLTTRFKQVTDFLSAATTTHISLD-------HHSMTLTPDEVKSLLLKYLDC--RPQ 316

Query: 153 YVPGLKVETIPLLRS------KEEP------EFSMVDKFLMDIRHYSASISGCSSPN--- 197
            +P   + T P   S      ++        +    DK    I    +S++    P    
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII---ESSLN-VLEPAEYR 372

Query: 198 ----GIILFGDQNIDIKP----IL-AEMDYGLPEETVIVGDATSCFLFKTGENSQNYNGA 248
                + +F   +  I      ++  ++        V+        + K     Q     
Sbjct: 373 KMFDRLSVFPP-SAHIPTILLSLIWFDVIKSDVMV-VVNKLHKYSLVEK-----QPKEST 425

Query: 249 LYFFDAVALVFSRDSDNSNVPEIQFDITMSTGVLPFGPELKAVSVKEHNADCSLLTAR-- 306
           +                  +P I  ++ +            A+    H    S++     
Sbjct: 426 IS-----------------IPSIYLELKVKL------ENEYAL----HR---SIVDHYNI 455

Query: 307 MEGYDGLLHGEEILEDIKEHIDDKYPYLYIGVIHQRGSLQFGSRSYMS-LYEVLGAEDQF 365
            + +D         +D+     D+Y Y +IG  H +        +    ++  L   D  
Sbjct: 456 PKTFDS--------DDLIPPYLDQYFYSHIGH-HLKNIEHPERMTLFRMVF--L---DFR 501

Query: 366 FIVNGVGIKPGDSFIFYHSDSDTASSSSIDVLDGLRL 402
           F+      K     I + S +  AS S ++ L  L+ 
Sbjct: 502 FLEQ----K-----IRHDSTAWNASGSILNTLQQLKF 529

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 37.6 bits (88), Expect = 4e-04
 Identities = 8/31 (25%), Positives = 14/31 (45%)

Query: 11 EDLLQHILSRLPALSFASAACVNKSWNKVCN 41
          ++LL  I S L        + V K W ++ +
Sbjct: 14 DELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	522
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.41
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.8
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.4
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.14
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.02
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	96.34
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	95.56
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	93.62

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.41  E-value=1.5e-07  Score=70.71  Aligned_cols=39  Identities=26%  Similarity=0.272  Sum_probs=34.9

Q ss_pred             CCcccCCcHHHHHHHHhhCChhhhhhhhhhhHHHHHHHH
Q 036974            3 GGSAALGNEDLLQHILSRLPALSFASAACVNKSWNKVCN   41 (522)
Q Consensus         3 ~~~~~~~~~~~~~~il~~~p~~~~~~~~~v~~~w~~~~~   41 (522)
                      +..+..+|+||+.+||++||.++++++++|||.||++++
T Consensus         6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~   44 (53)
T 1fs1_A            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   44 (53)
T ss_dssp             ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            357889999999999999999999999999999999986

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.80  E-value=1.2e-05  Score=81.60  Aligned_cols=39  Identities=26%  Similarity=0.340  Sum_probs=36.5

Q ss_pred             CCcccCCcHHHHHHHHhhCChhhhh-hhhhhhHHHHHHHH
Q 036974            3 GGSAALGNEDLLQHILSRLPALSFA-SAACVNKSWNKVCN   41 (522)
Q Consensus         3 ~~~~~~~~~~~~~~il~~~p~~~~~-~~~~v~~~w~~~~~   41 (522)
                      ...+..||+||+..||++||+++|+ +++||||.||++++
T Consensus        48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~   87 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVD   87 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHT
T ss_pred             ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhc
Confidence            4578899999999999999999999 99999999999986

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.40  E-value=5.4e-05  Score=76.69  Aligned_cols=51  Identities=22%  Similarity=0.184  Sum_probs=42.2

Q ss_pred             CcccCCcHHHHHHHHhhCChhhhhhhhhhhHHHHHHHHHH------hc--cCeEEEEEe
Q 036974            4 GSAALGNEDLLQHILSRLPALSFASAACVNKSWNKVCNQI------LS--KPKLASALS   54 (522)
Q Consensus         4 ~~~~~~~~~~~~~il~~~p~~~~~~~~~v~~~w~~~~~~i------l~--~~~~~sa~S   54 (522)
                      +.++.+|.||+.+||++|++++++++++|||.||.+|+.=      +.  .++|.+-..
T Consensus         3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~W~si~~   61 (312)
T 3l2o_B            3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDW   61 (312)
T ss_dssp             CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGGCCCCCG
T ss_pred             chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCCCCcccc
Confidence            4688999999999999999999999999999999999742      22  256775443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.14  E-value=0.00015  Score=74.51  Aligned_cols=37  Identities=16%  Similarity=0.235  Sum_probs=34.6

Q ss_pred             ccCCcHHHHHHHHhhCChhhhhhhhhhhHHHHHHHHH
Q 036974            6 AALGNEDLLQHILSRLPALSFASAACVNKSWNKVCNQ   42 (522)
Q Consensus         6 ~~~~~~~~~~~il~~~p~~~~~~~~~v~~~w~~~~~~   42 (522)
                      +..||+||+.+||++||.++|+++++|||.||++++.
T Consensus        15 ~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~   51 (464)
T 3v7d_B           15 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   51 (464)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred             hHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence            5679999999999999999999999999999999874

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.02  E-value=0.00024  Score=72.98  Aligned_cols=37  Identities=30%  Similarity=0.374  Sum_probs=33.5

Q ss_pred             ccCCcHH----HHHHHHhhCChhhhhhhhhhhHHHHHHHHH
Q 036974            6 AALGNED----LLQHILSRLPALSFASAACVNKSWNKVCNQ   42 (522)
Q Consensus         6 ~~~~~~~----~~~~il~~~p~~~~~~~~~v~~~w~~~~~~   42 (522)
                      +..||+|    |+.+||++||+++|+++++|||.||++++.
T Consensus        11 ~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~   51 (435)
T 1p22_A           11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSD   51 (435)
T ss_dssp             HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Confidence            4568999    999999999999999999999999988753

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=96.88  E-value=0.00045  Score=70.83  Aligned_cols=37  Identities=22%  Similarity=0.231  Sum_probs=34.4

Q ss_pred             cccCCcHHHHHHHHhhCChhhhhhhhhhhHHHHHHHH
Q 036974            5 SAALGNEDLLQHILSRLPALSFASAACVNKSWNKVCN   41 (522)
Q Consensus         5 ~~~~~~~~~~~~il~~~p~~~~~~~~~v~~~w~~~~~   41 (522)
                      -+..||+|++.+||++||.++|+++++|||.||++++
T Consensus        18 ~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~   54 (445)
T 2ovr_B           18 FISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAE   54 (445)
T ss_dssp             TTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHT
T ss_pred             hhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcC
Confidence            3678999999999999999999999999999998875

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=96.34  E-value=0.0019  Score=64.01  Aligned_cols=39  Identities=26%  Similarity=0.272  Sum_probs=36.0

Q ss_pred             CCcccCCcHHHHHHHHhhCChhhhhhhhhhhHHHHHHHH
Q 036974            3 GGSAALGNEDLLQHILSRLPALSFASAACVNKSWNKVCN   41 (522)
Q Consensus         3 ~~~~~~~~~~~~~~il~~~p~~~~~~~~~v~~~w~~~~~   41 (522)
                      +..|+.+|+||+.+|+++||.+++.+++.|||.|++++.
T Consensus         6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~   44 (336)
T 2ast_B            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   44 (336)
T ss_dssp             -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHT
T ss_pred             cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence            356889999999999999999999999999999999984

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=95.56  E-value=0.0072  Score=64.48  Aligned_cols=38  Identities=26%  Similarity=0.305  Sum_probs=30.5

Q ss_pred             CcccCCcHHHHHHHHhhCC-hhhhhhhhhhhHHHHHHHH
Q 036974            4 GSAALGNEDLLQHILSRLP-ALSFASAACVNKSWNKVCN   41 (522)
Q Consensus         4 ~~~~~~~~~~~~~il~~~p-~~~~~~~~~v~~~w~~~~~   41 (522)
                      --++.+|+||+++||++|| .++..+++.|||.|+++..
T Consensus         4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~   42 (594)
T 2p1m_B            4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIER   42 (594)
T ss_dssp             ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHH
T ss_pred             cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhh
Confidence            3477899999999999999 9999999999999999943

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=93.62  E-value=0.03  Score=59.72  Aligned_cols=36  Identities=17%  Similarity=0.358  Sum_probs=33.0

Q ss_pred             cCCcHHHHHHHHhhC-ChhhhhhhhhhhHHHHHHHHH
Q 036974            7 ALGNEDLLQHILSRL-PALSFASAACVNKSWNKVCNQ   42 (522)
Q Consensus         7 ~~~~~~~~~~il~~~-p~~~~~~~~~v~~~w~~~~~~   42 (522)
                      ..+|+|++++||++| |.+++.+++.|||.|+.+...
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~   50 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSE   50 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhc
Confidence            469999999999999 999999999999999999543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	522
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	2e-06
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	9e-05
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	4e-04
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	7e-04

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (100), Expect = 2e-06
 Identities = 8/31 (25%), Positives = 14/31 (45%)

Query: 11 EDLLQHILSRLPALSFASAACVNKSWNKVCN 41
          ++LL  I S L        + V K W ++ +
Sbjct: 6  DELLLGIFSCLCLPELLKVSGVCKRWYRLAS 36

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 9e-05
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 12 DLLQHILSRLPALSFASAACVNKSWNKVCN 41
           + ++ILS L A S  +A  V K W +V +
Sbjct: 21 HIAENILSYLDAKSLCAAELVCKEWYRVTS 50

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 4e-04
 Identities = 7/32 (21%), Positives = 13/32 (40%)

Query: 11 EDLLQHILSRLPALSFASAACVNKSWNKVCNQ 42
          ++L  ++LS L       AA   + W  +   
Sbjct: 24 KELALYVLSFLEPKDLLQAAQTCRYWRILAED 55

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.9 bits (85), Expect = 7e-04
 Identities = 6/32 (18%), Positives = 16/32 (50%)

Query: 11 EDLLQHILSRLPALSFASAACVNKSWNKVCNQ 42
           ++   I + L      ++  V+++WNK+  +
Sbjct: 11 FEISLKIFNYLQFEDIINSLGVSQNWNKIIRK 42

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	522
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.78
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.19
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.17
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.94

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.8e-09  Score=76.12  Aligned_cols=36  Identities=22%  Similarity=0.243  Sum_probs=34.6

Q ss_pred             ccCCcHHHHHHHHhhCChhhhhhhhhhhHHHHHHHH
Q 036974            6 AALGNEDLLQHILSRLPALSFASAACVNKSWNKVCN   41 (522)
Q Consensus         6 ~~~~~~~~~~~il~~~p~~~~~~~~~v~~~w~~~~~   41 (522)
                      |+.+|+||+++||++||.++++++++|||.||++|+
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~   36 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   36 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            678999999999999999999999999999999986

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.19  E-value=2.7e-07  Score=76.36  Aligned_cols=36  Identities=17%  Similarity=0.228  Sum_probs=34.0

Q ss_pred             ccCCcHHHHHHHHhhCChhhhhhhhhhhHHHHHHHH
Q 036974            6 AALGNEDLLQHILSRLPALSFASAACVNKSWNKVCN   41 (522)
Q Consensus         6 ~~~~~~~~~~~il~~~p~~~~~~~~~v~~~w~~~~~   41 (522)
                      |+.+|+||+++||++||.++++++++|||.|+++++
T Consensus         6 ~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~   41 (100)
T d1nexb1           6 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR   41 (100)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHH
T ss_pred             hhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence            567999999999999999999999999999999885

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=4e-07  Score=75.12  Aligned_cols=38  Identities=21%  Similarity=0.232  Sum_probs=35.4

Q ss_pred             cccCCcHHHHHHHHhhCChhhhhhhhhhhHHHHHHHHH
Q 036974            5 SAALGNEDLLQHILSRLPALSFASAACVNKSWNKVCNQ   42 (522)
Q Consensus         5 ~~~~~~~~~~~~il~~~p~~~~~~~~~v~~~w~~~~~~   42 (522)
                      -|+.+|+||+.+||++||.++|++++||||.|+.+++.
T Consensus        18 ~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~   55 (102)
T d2ovrb1          18 FISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAED   55 (102)
T ss_dssp             TTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTC
T ss_pred             ChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC
Confidence            36889999999999999999999999999999998864

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=2.5e-06  Score=72.28  Aligned_cols=32  Identities=34%  Similarity=0.497  Sum_probs=30.3

Q ss_pred             cHHHHHHHHhhCChhhhhhhhhhhHHHHHHHH
Q 036974           10 NEDLLQHILSRLPALSFASAACVNKSWNKVCN   41 (522)
Q Consensus        10 ~~~~~~~il~~~p~~~~~~~~~v~~~w~~~~~   41 (522)
                      ++||..+||++||.++|++++||||.||++++
T Consensus        19 ~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~   50 (118)
T d1p22a1          19 LDHIAENILSYLDAKSLCAAELVCKEWYRVTS   50 (118)
T ss_dssp             CHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHH
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc
Confidence            35999999999999999999999999999987