Citrus Sinensis ID: 036992

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------54

ETYQYYDLPFCRPEPIKWKKETLGEVLNGDRLASALYELKFLEAKTGVTLCSKKLKVDEVAKFRKAVADDFYFQMYYDDLPIWGYIGKIEDGSLVLSEKGNKYYLFTRVQFDALYNGDQVVEIRAFSDPTSVVDITDDIEINVKFTYSIVWSETSAQFETRMDKYSRASSLPTLHKIHWFSFINSIVFILLLMGLLILLILRRLKNDLRKCSSGDEEEDKEVGWKYIHGDVFRYPQNISLFSAVMGVGNQLLTIVCILFVLAFLGILYPYNRGLLSTSLVLLYSLTSVVAGYITSSFHNQFSDAGWERSVFLAGILYFGPLTVTVLILNTVAVSYGATAALPFGTIMVIVFIYMLFAVPLLALGGRIGYWFRSEFQAPSALNRYPREIPPLPWYQKSPCQMFIVGLLSFSTIALELHHLYASLWGYKIFTPPGILFVMFIILLVLTAILSIGLTYIQLSVEDHEWWWRSVFRGGSTAIFMFAYSIYFYFRSNMSGFLQLSFFLGYNAAMCYAFFLILGSISFRASMIFVRRIYRVVKSE

cccccccccccccccccccccccccHHccccEEEccEEEEEEEcccccEEEcccccHHHHHHHHHHHHcccEEEEEEEcccEEEEEcEEccccEEEEEcccEEEEEEEEEEEEEEccccEEEEEEEEccccccccccccccEEEEEEEEEEccccccccHHHHHHcccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHcccEEEEcEEEccccccccEEEEEccccEEHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccEEcccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc

ccEEEEEcccccccccccccccHHHHccccccccccEEEEEccccccEEEEEEEccHHHHHHHHHHHHHHcEEEEEEccccEEEEEEEcccccccccccccEEEEEEEEEEEEEEcccEEEEEEEEEcccccEEccccccEEEEEEEEEEEEcccccHHHHHHHHcccccccccccEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccEEEEHHHHccccccccccccccccccccccccccccccHHHHHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc

etyqyydlpfcrpepikwkketlgevlngDRLASALYELKFLEAKTGVTLCSKKLKVDEVAKFRKAVaddfyfqmyyddlpiwgyigkiedgslvlsekgnkyyLFTRVQfdalyngdqvveirafsdptsvvditddieiNVKFTYSIVWSETSAQFETrmdkysrasslptlhkihWFSFINSIVFILLLMGLLILLILRRLKNDlrkcssgdeeedkevgwkyihgdvfrypqniSLFSAVMGVGNQLLTIVCILFVLAFLGILYPYNRGLLSTSLVLLYSLTSVVAGYITSSFhnqfsdagwERSVFLAGILYFGPLTVTVLILNTVAVSygataalpfgTIMVIVFIYMLFAVPLLAlggrigywfrsefqapsalnrypreipplpwyqkspcqmFIVGLLSFSTIALELHHLYASLwgykiftppgILFVMFIILLVLTAILSIGLTYIQLSVEDHEWWWRSVFRGGSTAIFMFAYSIYFYFRSNMSGFLQLSFFLGYNAAMCYAFFLILGSISFRASMIFVRRIYRVVKSE

etyqyydlpfcrpepikwKKETLGEVLNGDRLASALYELKFLeaktgvtlcskklkvdeVAKFRKAVADDFYFQMYYDDLPIWGYIGKIEDGSLVLSEKGNKYYLFTRVQFDALYNGDQVVEIRAfsdptsvvditddieinVKFTYSIVWSETSAQFETRMDKYSRASSLPTLHKIHWFSFINSIVFILLLMGLLILLILRRLKNDLRKcssgdeeedkevgwKYIHGDVFRYPQNISLFSAVMGVGNQLLTIVCILFVLAFLGILYPYNRGLLSTSLVLLYSLTSVVAGYITSSFHNQFSDAGWERSVFLAGILYFGPLTVTVLILNTVAVSYGATAALPFGTIMVIVFIYMLFAVPLLALGGRIGYWFRSEFQAPSALNRYPREIPPLPWYQKSPCQMFIVGLLSFSTIALELHHLYASLWGYKIFTPPGILFVMFIILLVLTAILSIGLTYIQLSVEDHEWWWRSVFRGGSTAIFMFAYSIYFYFRSNMSGFLQLSFFLGYNAAMCYAFFLILGSISFRASMIFVRRIYRVVKSE

ETYQYYDLPFCRPEPIKWKKETLGEVLNGDRLASALYELKFLEAKTGVTLCSKKLKVDEVAKFRKAVADDFYFQMYYDDLPIWGYIGKIEDGSLVLSEKGNKYYLFTRVQFDALYNGDQVVEIRAFSDPTSVVDITDDIEINVKFTYSIVWSETSAQFETRMDKYSRASSLPTLHKIHWFSFINSIVFilllmgllillilrrlkndlrKCSSGDEEEDKEVGWKYIHGDVFRYPQNISLFSAVMGVGNQLLTIVCILFVLAFLGILYPYNRGllstslvllysltsvvAGYITSSFHNQFSDAGWERSVFLAGILYFGPLTVTVLILNTVAVSYGATAALPFGTIMVIVFIYMLFAVPLLALGGRIGYWFRSEFQAPSALNRYPREIPPLPWYQKSPCQMFIVGLLSFSTIALELHHLYASLWGYKIFTPPGilfvmfiillvlTAILSIGLTYIQLSVEDHEWWWRSVFRGGSTAIFMFAYSIYFYFRSNMSGFLQLSFFLGYNAAMCYAFFLILGSISFRASMIFVRRIYRVVKSE

**YQYYDLPFCRPEPIKWKKETLGEVLNGDRLASALYELKFLEAKTGVTLCSKKLKVDEVAKFRKAVADDFYFQMYYDDLPIWGYIGKIEDGSLVLSEKGNKYYLFTRVQFDALYNGDQVVEIRAFSDPTSVVDITDDIEINVKFTYSIVWSETSAQFETRMDKYSRASSLPTLHKIHWFSFINSIVFILLLMGLLILLILRRLKNDLRK**********EVGWKYIHGDVFRYPQNISLFSAVMGVGNQLLTIVCILFVLAFLGILYPYNRGLLSTSLVLLYSLTSVVAGYITSSFHNQFSDAGWERSVFLAGILYFGPLTVTVLILNTVAVSYGATAALPFGTIMVIVFIYMLFAVPLLALGGRIGYWFRSEFQAPSALNRYPREIPPLPWYQKSPCQMFIVGLLSFSTIALELHHLYASLWGYKIFTPPGILFVMFIILLVLTAILSIGLTYIQLSVEDHEWWWRSVFRGGSTAIFMFAYSIYFYFRSNMSGFLQLSFFLGYNAAMCYAFFLILGSISFRASMIFVRRIYRVV***

ETYQYYDLPFCRPEP******TLG*VLNGDRLASALYELKFLEAKTGVTLCSKKLKVDEVAKFRKAVADDFYFQMYYDDLPIWGYIGKIEDGSLVLSEKGNKYYLFTRVQFDALYNGDQVVEIRAFS********TDDIEINVKFTYSIVWSETSAQFETRMDKYSRASSLPTLHKIHWFSFINSIVFILLLMGLLILLILRRLKNDLRK*S***EEEDKEVGWKYIHGDVFRYPQNISLFSAVMGVGNQLLTIVCILFVLAFLGILYPYNRGLLSTSLVLLYSLTSVVAGYITSSFHNQFSDAGWERSVFLAGILYFGPLTVTVLILNTVAVSYGATAALPFGTIMVIVFIYMLFAVPLLALGGRIGYWFRSEFQAPSALNRYPREIPPLPWYQKSPCQMFIVGLLSFSTIALELHHLYASLWGYKIFTPPGILFVMFIILLVLTAILSIGLTYIQLSVEDHEWWWRSVFRGGSTAIFMFAYSIYFYFRSNMSGFLQLSFFLGYNAAMCYAFFLILGSISFRASMIFVRRIYRVVKSE

ETYQYYDLPFCRPEPIKWKKETLGEVLNGDRLASALYELKFLEAKTGVTLCSKKLKVDEVAKFRKAVADDFYFQMYYDDLPIWGYIGKIEDGSLVLSEKGNKYYLFTRVQFDALYNGDQVVEIRAFSDPTSVVDITDDIEINVKFTYSIVWSETSAQFETRMDKYSRASSLPTLHKIHWFSFINSIVFILLLMGLLILLILRRLKNDLRK**********EVGWKYIHGDVFRYPQNISLFSAVMGVGNQLLTIVCILFVLAFLGILYPYNRGLLSTSLVLLYSLTSVVAGYITSSFHNQFSDAGWERSVFLAGILYFGPLTVTVLILNTVAVSYGATAALPFGTIMVIVFIYMLFAVPLLALGGRIGYWFRSEFQAPSALNRYPREIPPLPWYQKSPCQMFIVGLLSFSTIALELHHLYASLWGYKIFTPPGILFVMFIILLVLTAILSIGLTYIQLSVEDHEWWWRSVFRGGSTAIFMFAYSIYFYFRSNMSGFLQLSFFLGYNAAMCYAFFLILGSISFRASMIFVRRIYRVVKSE

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		539	2.2.26 [Sep-21-2011]
Q54ZW0		587	Putative phagocytic recep	yes	no	0.988	0.908	0.391	1e-121
Q9DBU0		606	Transmembrane 9 superfami	yes	no	0.994	0.884	0.392	1e-106
O15321		606	Transmembrane 9 superfami	yes	no	0.994	0.884	0.390	1e-105
A4IFE9		606	Transmembrane 9 superfami	yes	no	0.994	0.884	0.390	1e-105
Q5R8F1		606	Transmembrane 9 superfami	yes	no	0.994	0.884	0.388	1e-105
Q66HF2		589	Transmembrane 9 superfami	yes	no	0.962	0.881	0.381	2e-98
Q9HD45		589	Transmembrane 9 superfami	no	no	0.970	0.887	0.320	5e-81
Q9ET30		587	Transmembrane 9 superfami	no	no	0.970	0.890	0.320	7e-81
A5D7E2		642	Transmembrane 9 superfami	no	no	0.983	0.825	0.298	5e-77
Q92544		642	Transmembrane 9 superfami	no	no	0.983	0.825	0.298	5e-77

>sp\|Q54ZW0\|PHG1B_DICDI Putative phagocytic receptor 1b OS=Dictyostelium discoideum GN=phg1b PE=2 SV=1	Back alignment and function desciption

 Score =  436 bits (1122), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 213/544 (39%), Positives = 338/544 (62%), Gaps = 11/544 (2%)

Query: 1   ETYQYYDLPFCRPEPIKWKKETLGEVLNGDRLASALYELKFLEAKTGVTLCSKKLKVDEV 60
           ETY++Y LPFC+P  I +KK  LGE+L GD    + Y+  F  +     LC   LK +++
Sbjct: 50  ETYEFYTLPFCKPSSISYKKTKLGEILQGDSAVLSDYQFPFKSSFENKQLCEYTLKKEDI 109

Query: 61  AKFRKAVADDFYFQMYYDDLPIWGYIGKIEDGSLVLSEKGNKYYLFTRVQFDALYNGDQV 120
            KF+KA+ + +Y +M YDDLPI+ ++G ++D  L       +YYL+  + F+  YNGDQV
Sbjct: 110 EKFKKAIGEYYYAEMIYDDLPIFSFVGTVDDSDLT----NIRYYLYNHIPFEFDYNGDQV 165

Query: 121 VEIRAFSDPTSVVDITDDIEINVKFTYSIVWSETSAQFETRMDKYSRASSLPTLHKIHWF 180
           + +   ++   V++++D  EI +K TYS  W  T  +F  RMD Y    +     +IHW 
Sbjct: 166 IRVNIDTEHIKVIELSDQDEITLKLTYSAKWQPTEHEFSKRMDLYEEFFTKEL--EIHWL 223

Query: 181 SFINSIVFILLLMGLLILLILRRLKNDLRKCSSGDEEED----KEVGWKYIHGDVFRYPQ 236
           S +NS   ++LL   L ++I++ LKND  + S  DEEED    ++ GWK +HGDVFR+P 
Sbjct: 224 SVMNSFFLVVLLTAFLAIMIMKILKNDYSRYSKTDEEEDSDYQEDYGWKLVHGDVFRFPP 283

Query: 237 NISLFSAVMGVGNQLLTIVCILFVLAFLGILYPYNRGLLSTSLVLLYSLTSVVAGYITSS 296
             ++FSA  G+G Q ++IVC +  L+  G+ YP N G + T+ ++LY+LTS ++GY ++ 
Sbjct: 284 YKNVFSAFYGIGWQFISIVCGILALSLFGMFYPNNGGNMYTAGIVLYALTSGISGYQSAK 343

Query: 297 FHNQFSDAGWERSVFLAGILYFGPLTVTVLILNTVAVSYGATAALPFGTIMVIVFIYMLF 356
            +       W  ++ L   L+  PL + V++ NTVA+++ +T ALP  T++ ++ I++  
Sbjct: 344 MYKNMGGNKWAWNIVLTATLFVAPLFIVVILSNTVAITWHSTVALPILTMIEVITIWLFV 403

Query: 357 AVPLLALGGRIGYWFRSEFQAPSALNRYPREIPPLPWYQKSPCQMFIVGLLSFSTIALEL 416
             PL  +GG  G      F+AP     +PRE+PP+ WY++ PCQ+ I G L FS I +EL
Sbjct: 404 GFPLTVVGGIAGRRLSENFEAPCRTKNFPREVPPIQWYRRLPCQILIAGFLPFSAIYIEL 463

Query: 417 HHLYASLWGYKIFTPPGILFVMFIILLVLTAILSIGLTYIQLSVEDHEWWWRSVFRGGST 476
            +++ S+WG+  +T  GIL ++F+IL+ +T  +++ LTY QLS+EDH+WWW S   GGST
Sbjct: 464 FYIFNSVWGHSTYTLYGILCLVFLILINVTVCITVALTYFQLSMEDHKWWWNSFINGGST 523

Query: 477 AIF-MFAYSIYFYFRSNMSGFLQLSFFLGYNAAMCYAFFLILGSISFRASMIFVRRIYRV 535
            +F       Y+Y+ S+M G LQ +F+  Y   +C+ FF++LG++ F +S+IFV+RIYR 
Sbjct: 524 VVFIYMYSIYYYYYISHMYGLLQATFYFTYMLIVCFFFFILLGTVGFYSSLIFVKRIYRN 583

Query: 536 VKSE 539
           +KS+
Sbjct: 584 LKSD 587

Involved in adhesion and phagocytosis of hydrophilic particles.
Dictyostelium discoideum (taxid: 44689)

>sp\|Q9DBU0\|TM9S1_MOUSE Transmembrane 9 superfamily member 1 OS=Mus musculus GN=Tm9sf1 PE=2 SV=2	Back alignment and function description

>sp\|O15321\|TM9S1_HUMAN Transmembrane 9 superfamily member 1 OS=Homo sapiens GN=TM9SF1 PE=2 SV=2	Back alignment and function description

>sp\|A4IFE9\|TM9S1_BOVIN Transmembrane 9 superfamily member 1 OS=Bos taurus GN=TM9SF1 PE=2 SV=1	Back alignment and function description

>sp\|Q5R8F1\|TM9S1_PONAB Transmembrane 9 superfamily member 1 OS=Pongo abelii GN=TM9SF1 PE=2 SV=1	Back alignment and function description

>sp\|Q66HF2\|TM9S1_RAT Transmembrane 9 superfamily member 1 OS=Rattus norvegicus GN=Tm9sf1 PE=2 SV=1	Back alignment and function description

>sp\|Q9HD45\|TM9S3_HUMAN Transmembrane 9 superfamily member 3 OS=Homo sapiens GN=TM9SF3 PE=1 SV=2	Back alignment and function description

>sp\|Q9ET30\|TM9S3_MOUSE Transmembrane 9 superfamily member 3 OS=Mus musculus GN=Tm9sf3 PE=1 SV=1	Back alignment and function description

>sp\|A5D7E2\|TM9S4_BOVIN Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2	Back alignment and function description

>sp\|Q92544\|TM9S4_HUMAN Transmembrane 9 superfamily member 4 OS=Homo sapiens GN=TM9SF4 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		539
225464956		608	PREDICTED: putative phagocytic receptor	1.0	0.886	0.717	0.0
296084915		636	unnamed protein product [Vitis vinifera]	1.0	0.847	0.717	0.0
147789820		920	hypothetical protein VITISV_004804 [Viti	1.0	0.585	0.708	0.0
449443434		593	PREDICTED: putative phagocytic receptor	1.0	0.908	0.706	0.0
224132390		586	predicted protein [Populus trichocarpa]	0.998	0.918	0.700	0.0
357471659		589	Transmembrane 9 superfamily member [Medi	0.998	0.913	0.621	0.0
145323800		589	endomembrane protein 70-like protein [Ar	1.0	0.915	0.583	0.0
297849146		589	endomembrane protein 70 family protein [	1.0	0.915	0.587	0.0
356544724		589	PREDICTED: putative phagocytic receptor	0.998	0.913	0.605	0.0
449439203		591	PREDICTED: putative phagocytic receptor	0.996	0.908	0.542	1e-173

>gi\|225464956\|ref\|XP_002274254.1\| PREDICTED: putative phagocytic receptor 1b-like [Vitis vinifera]	Back alignment and taxonomy information

 Score =  809 bits (2089), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/539 (71%), Positives = 444/539 (82%)

Query: 1   ETYQYYDLPFCRPEPIKWKKETLGEVLNGDRLASALYELKFLEAKTGVTLCSKKLKVDEV 60
           ETY YYDLPFCRP+ +  +K +LGEVLNGD L +ALYELKF E K G TLC KKLK DEV
Sbjct: 70  ETYHYYDLPFCRPDQVIRRKASLGEVLNGDCLTNALYELKFRENKIGETLCQKKLKGDEV 129

Query: 61  AKFRKAVADDFYFQMYYDDLPIWGYIGKIEDGSLVLSEKGNKYYLFTRVQFDALYNGDQV 120
           AKFR AV++DFYFQMYYDDLP+WG+IGK+ED +  ++E G KYYLF  VQFDALYNG+Q+
Sbjct: 130 AKFRNAVSNDFYFQMYYDDLPLWGFIGKVEDENWTVNENGPKYYLFKHVQFDALYNGNQI 189

Query: 121 VEIRAFSDPTSVVDITDDIEINVKFTYSIVWSETSAQFETRMDKYSRASSLPTLHKIHWF 180
           +EIRAFSDP  VVDIT+D++I+VKFTYSI+W ETS QFE RMDKYSRAS  PT  +I WF
Sbjct: 190 IEIRAFSDPNHVVDITEDVDISVKFTYSILWKETSTQFENRMDKYSRASLFPTHQQIRWF 249

Query: 181 SFINSIVFILLLMGLLILLILRRLKNDLRKCSSGDEEEDKEVGWKYIHGDVFRYPQNISL 240
           SFINS V I+LLMGLL ++ +R LKNDLRK S GDEEEDKEVGWKYIHGDVFRYP  +SL
Sbjct: 250 SFINSFVIIVLLMGLLTMIFMRHLKNDLRKFSGGDEEEDKEVGWKYIHGDVFRYPPCMSL 309

Query: 241 FSAVMGVGNQLLTIVCILFVLAFLGILYPYNRGLLSTSLVLLYSLTSVVAGYITSSFHNQ 300
           F AV+G G QLL     LFVLA LG+LYPYNRG L TSLV+ Y+LTSVVAGY  SSF+NQ
Sbjct: 310 FCAVLGTGTQLLIQAAFLFVLALLGVLYPYNRGALCTSLVVTYTLTSVVAGYTASSFYNQ 369

Query: 301 FSDAGWERSVFLAGILYFGPLTVTVLILNTVAVSYGATAALPFGTIMVIVFIYMLFAVPL 360
           F + GW+RSV L+G LY GPL V V ILN VAVSYGATAALPFGTI+VI+ IY  F +PL
Sbjct: 370 FVETGWKRSVLLSGTLYLGPLFVMVSILNAVAVSYGATAALPFGTIVVILLIYTFFTIPL 429

Query: 361 LALGGRIGYWFRSEFQAPSALNRYPREIPPLPWYQKSPCQMFIVGLLSFSTIALELHHLY 420
           L LGG IGY  RSEFQAP A  R PREIPPL WY+K+P QM + GLL FS I LELHHLY
Sbjct: 430 LGLGGVIGYRLRSEFQAPCATKRCPREIPPLAWYRKTPGQMILGGLLPFSAIILELHHLY 489

Query: 421 ASLWGYKIFTPPGILFVMFIILLVLTAILSIGLTYIQLSVEDHEWWWRSVFRGGSTAIFM 480
           ASLWGYKI+T PGILF+MFIIL++LTA+LSIGLTY+QLSVEDHEWWWRS+ RGGSTAIFM
Sbjct: 490 ASLWGYKIWTLPGILFIMFIILVLLTAMLSIGLTYVQLSVEDHEWWWRSLLRGGSTAIFM 549

Query: 481 FAYSIYFYFRSNMSGFLQLSFFLGYNAAMCYAFFLILGSISFRASMIFVRRIYRVVKSE 539
           F + IYFY RS MSGF+Q SF+ GYNA +CYA FL+LG+ISFRAS++FVR IY  +KSE
Sbjct: 550 FGHCIYFYARSRMSGFMQFSFYFGYNACICYAVFLMLGTISFRASLMFVRLIYHAIKSE 608

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|296084915\|emb\|CBI28324.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147789820\|emb\|CAN67239.1\| hypothetical protein VITISV_004804 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449443434\|ref\|XP_004139482.1\| PREDICTED: putative phagocytic receptor 1b-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224132390\|ref\|XP_002328257.1\| predicted protein [Populus trichocarpa] gi\|222837772\|gb\|EEE76137.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|357471659\|ref\|XP_003606114.1\| Transmembrane 9 superfamily member [Medicago truncatula] gi\|355507169\|gb\|AES88311.1\| Transmembrane 9 superfamily member [Medicago truncatula]	Back alignment and taxonomy information

>gi\|145323800\|ref\|NP_001077489.1\| endomembrane protein 70-like protein [Arabidopsis thaliana] gi\|332190159\|gb\|AEE28280.1\| endomembrane protein 70-like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297849146\|ref\|XP_002892454.1\| endomembrane protein 70 family protein [Arabidopsis lyrata subsp. lyrata] gi\|297338296\|gb\|EFH68713.1\| endomembrane protein 70 family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|356544724\|ref\|XP_003540797.1\| PREDICTED: putative phagocytic receptor 1b-like [Glycine max]	Back alignment and taxonomy information

>gi\|449439203\|ref\|XP_004137376.1\| PREDICTED: putative phagocytic receptor 1b-like [Cucumis sativus] gi\|449529802\|ref\|XP_004171887.1\| PREDICTED: putative phagocytic receptor 1b-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		539
TAIR\|locus:2201806		589	AT1G08350 [Arabidopsis thalian	1.0	0.915	0.535	1.4e-156
TAIR\|locus:2041160		592	AT2G01970 "AT2G01970" [Arabido	0.996	0.907	0.500	1.9e-147
TAIR\|locus:2006872		592	AT1G14670 "AT1G14670" [Arabido	0.998	0.908	0.498	3.1e-147
TAIR\|locus:2169100		593	AT5G37310 [Arabidopsis thalian	0.996	0.905	0.491	7.5e-144
DICTYBASE\|DDB_G0277273		587	phg1B "TM9 protein B" [Dictyos	0.988	0.908	0.362	3e-108
UNIPROTKB\|A4IFE9		606	TM9SF1 "Transmembrane 9 superf	0.994	0.884	0.354	1.1e-89
UNIPROTKB\|F1MCZ2		606	TM9SF1 "Transmembrane 9 superf	0.994	0.884	0.354	1.1e-89
MGI\|MGI:1921390		606	Tm9sf1 "transmembrane 9 superf	0.994	0.884	0.356	1.4e-89
UNIPROTKB\|E9PSI1		815	TM9SF1 "Transmembrane 9 superf	0.994	0.657	0.354	1.7e-89
UNIPROTKB\|O15321		606	TM9SF1 "Transmembrane 9 superf	0.994	0.884	0.354	1.7e-89

TAIR\|locus:2201806 AT1G08350 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1526 (542.2 bits), Expect = 1.4e-156, P = 1.4e-156
 Identities = 289/540 (53%), Positives = 370/540 (68%)

Query:     1 ETYQYYDLPFCRPEPIKWKKETLGEVLNGDRLASALYELKFLEAKTGVTLCSKKLKVDEV 60
             ETYQYYDLPFCR  P+  K+ETLGEVLNGDRL S+LY+LKF E KT   LC K+L   ++
Sbjct:    50 ETYQYYDLPFCRRGPVIEKQETLGEVLNGDRLMSSLYKLKFREDKTHFVLCRKRLTSSDI 109

Query:    61 AKFRKAVADDFYFQMYYDDLPIWGYIGKIEDGSLVLSEKGNKYYLFTRVQFDALYNGDQV 120
             A+FR  +A D+YFQMYYDDLP+WG++GK+E       EK  KYY+F+ ++F+ LYN D+V
Sbjct:   110 ARFRDIIAQDYYFQMYYDDLPLWGFVGKVEGDYFGQGEKHTKYYIFSHLKFNVLYNADKV 169

Query:   121 VEIRAFSDPTSVVDITDDIEINVKFTYSIVWSETSAQFETRMDKYSRASSLPTLHKIHWF 180
             +EI +FSDP+ +VDI+++ EI+V+FTYS+ W+ TS + ETRM+KYSRAS  P   KIH+F
Sbjct:   170 IEINSFSDPSYMVDISENTEIDVQFTYSVSWNLTSERSETRMNKYSRASFHPISQKIHFF 229

Query:   181 SFINSIVFXXXXXXXXXXXXXXXXXXXXXKCSSGDEEEDKEVGWKYIHGDVFRYPQNISL 240
             SF+NSI                         S GDEEE KE GWK +H DVFR P+NIS 
Sbjct:   230 SFLNSITVVVLLIGLISFLFMRHLKNELRSYSIGDEEERKEAGWKLVHSDVFRCPRNISW 289

Query:   241 FSAVMGVGNQLLTIVCILFVLAFLGILYPYNRGXXXXXXXXXXXXXXXXAGYITSSFHNQ 300
               A++G G QLL ++  LF LAF G LYPYNRG                AGY ++SFH+Q
Sbjct:   290 LCAILGTGTQLLILIIALFALAFTGFLYPYNRGMLLTSLVIMYTLTSIVAGYTSTSFHSQ 349

Query:   301 FSDAGWERSVFLAGILYFGPLTVTVLILNTVAVSYGATAALPFGTIMVIVFIYMLFAVPL 360
             F     +RSV LAGILY  P  + + +LNTVA++YGATAALPFGTI++I+ I+ L  +P 
Sbjct:   350 FEGNKQKRSVRLAGILYPVPFFIILSVLNTVAITYGATAALPFGTIVIIILIFTLLNIPF 409

Query:   361 LALGGRIGYWFRS-EFQAPSALNRYPREIPPLPWYQKSPCQMFIVGLLSFSTIALELHHL 419
             L LGG +G  F   EFQ PSA+ R PREIPP  WY++   Q+F+ G + FS + LE H L
Sbjct:   410 LMLGGVLGNRFGLLEFQPPSAVKRNPREIPPQNWYRRKLYQVFLGGFVPFSAVVLEWHQL 469

Query:   420 YASLWGYKIFTPPGXXXXXXXXXXXXTAILSIGLTYIQLSVEDHEWWWRSVFRGGSTAIF 479
             YASLWG+KI+T PG            ++ + I LTYIQLS EDHEWWWRS+  GG TA+F
Sbjct:   470 YASLWGFKIYTSPGIMLFTFIVLIFLSSSVGIILTYIQLSGEDHEWWWRSILCGGFTAVF 529

Query:   480 MFAYSIYFYFRSNMSGFLQLSFFLGYNAAMCYAFFLILGSISFRASMIFVRRIYRVVKSE 539
             M+ Y + FY RS+M+GFLQLSF+LGY A +CYA FL+LG+ISF AS++F+R IYR VK E
Sbjct:   530 MYGYGVLFYLRSDMTGFLQLSFYLGYTALLCYALFLVLGTISFLASLMFIRHIYRSVKLE 589

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0009524 "phragmoplast" evidence=TAS

GO:0005484 "SNAP receptor activity" evidence=IPI

GO:0006944 "cellular membrane fusion" evidence=IMP

TAIR\|locus:2041160 AT2G01970 "AT2G01970" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2006872 AT1G14670 "AT1G14670" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2169100 AT5G37310 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0277273 phg1B "TM9 protein B" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|A4IFE9 TM9SF1 "Transmembrane 9 superfamily member 1" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MCZ2 TM9SF1 "Transmembrane 9 superfamily member 1" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

MGI\|MGI:1921390 Tm9sf1 "transmembrane 9 superfamily member 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PSI1 TM9SF1 "Transmembrane 9 superfamily member 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|O15321 TM9SF1 "Transmembrane 9 superfamily member 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R8F1	TM9S1_PONAB	No assigned EC number	0.3887	0.9944	0.8844	yes	no
A4IFE9	TM9S1_BOVIN	No assigned EC number	0.3905	0.9944	0.8844	yes	no
Q9DBU0	TM9S1_MOUSE	No assigned EC number	0.3924	0.9944	0.8844	yes	no
O15321	TM9S1_HUMAN	No assigned EC number	0.3905	0.9944	0.8844	yes	no
Q66HF2	TM9S1_RAT	No assigned EC number	0.3815	0.9628	0.8811	yes	no
Q54ZW0	PHG1B_DICDI	No assigned EC number	0.3915	0.9888	0.9080	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		539
pfam02990		518	pfam02990, EMP70, Endomembrane protein 70	0.0

>gnl\|CDD\|217309 pfam02990, EMP70, Endomembrane protein 70	Back alignment and domain information

 Score =  523 bits (1349), Expect = 0.0
 Identities = 212/520 (40%), Positives = 314/520 (60%), Gaps = 27/520 (5%)

Query: 1   ETYQYYDLPFCRPEPIKWKKETLGEVLNGDRLASALYELKFLEAKTGVTLCSKKLKVDEV 60
           E Y+YY LPFCRPE IK K E+LGEVL GDR+ ++ Y+LKFLE K    LC+ KL  ++V
Sbjct: 1   EPYEYYSLPFCRPEKIKHKSESLGEVLFGDRIYNSPYKLKFLEEKECEVLCAVKLTSEDV 60

Query: 61  AKFRKAVADDFYFQMYYDDLPIWGYIGK-------IEDGSLVLSEKGNKYYLFTRVQFDA 113
             FRKA+ + +Y Q   D+LP+ G++GK        E G  +  +   KYYLF  + F  
Sbjct: 61  KFFRKAIEEGYYVQWLIDNLPVAGFVGKVDNKGVGFESGFPLGFQTEEKYYLFNHLDFVI 120

Query: 114 LYNGD-----QVVEIRAFSD---------PTSVVDITDDIEINVKFTYSIVWSETSAQFE 159
            Y+       ++V I               +S  ++ +  E  + FTYS+ W E+  ++ 
Sbjct: 121 EYHDRDNDDYRIVGIEVTPRSVKPSGCSTTSSPQELDEGKENELTFTYSVKWKESDVKWA 180

Query: 160 TRMDKYSRASSLPTLHKIHWFSFINSIVFILLLMGLLILLILRRLKNDLRKCSSGDEEED 219
           +R DKY  A       +IHWFS INS+V +L L G++ ++++R L+ D+ + +  DE+ED
Sbjct: 181 SRWDKYLDAMHDL---QIHWFSIINSLVIVLFLSGIVSMILMRTLRRDIARYNELDEDED 237

Query: 220 K--EVGWKYIHGDVFRYPQNISLFSAVMGVGNQLLTIVCILFVLAFLGILYPYNRGLLST 277
              E GWK +HGDVFR P+N  L SA++G G QLL +V    V A LG L P NRG L T
Sbjct: 238 AQEESGWKLVHGDVFRPPRNPMLLSALVGSGVQLLLMVIGTIVFACLGFLSPSNRGSLLT 297

Query: 278 SLVLLYSLTSVVAGYITSSFHNQFSDAGWERSVFLAGILYFGPLTVTVLILNTVAVSYGA 337
           + ++LY+LT  VAGY+++  +  F    W+R++ L   L+ G + V   +LN V  +YG+
Sbjct: 298 AAIVLYALTGFVAGYVSARLYKTFKGKKWKRNLILTAFLFPGIVFVIFFVLNFVLWAYGS 357

Query: 338 TAALPFGTIMVIVFIYMLFAVPLLALGGRIGYWFRSEFQAPSALNRYPREIPPLPWYQKS 397
           + A+PFGTI+ ++ ++ L +VPL  LGG +G+  R+  Q P   N+ PR+IP  PWY   
Sbjct: 358 SGAIPFGTIVALLLLWFLVSVPLTFLGGIVGFRNRAGEQHPVRTNQIPRQIPEQPWYLSP 417

Query: 398 PCQMFIVGLLSFSTIALELHHLYASLWGYKIFTPPGILFVMFIILLVLTAILSIGLTYIQ 457
              + + G+L F  I +EL  ++ SLW +KI+   G LF++FIIL+V+ + ++I LTY Q
Sbjct: 418 LPGILMGGILPFGAIFIELFFIFTSLWLHKIYYMFGFLFLVFIILVVVCSEVTIVLTYFQ 477

Query: 458 LSVEDHEWWWRSVFRGGSTAIFMFAYSI-YFYFRSNMSGF 496
           L  ED+ WWWRS    GSTA+++F YSI YF+ +  +SGF
Sbjct: 478 LCAEDYRWWWRSFLTSGSTAVYVFLYSIYYFFTKLKISGF 517

Length = 518

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		539
KOG1278		628	consensus Endosomal membrane proteins, EMP70 [Intr	100.0
KOG1277		593	consensus Endosomal membrane proteins, EMP70 [Intr	100.0
PF02990		521	EMP70: Endomembrane protein 70; InterPro: IPR00424	100.0
PF11368		248	DUF3169: Protein of unknown function (DUF3169); In	81.86

>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=1.2e-180  Score=1403.47  Aligned_cols=533  Identities=36%  Similarity=0.721  Sum_probs=506.1

Q ss_pred             CcCCCCCCCCCCCCCCcccCCchhhhcCCcccccceEEEeccccccccccccccCHHHHHHHHHHHHhcceEEEEecCcc
Q 036992            2 TYQYYDLPFCRPEPIKWKKETLGEVLNGDRLASALYELKFLEAKTGVTLCSKKLKVDEVAKFRKAVADDFYFQMYYDDLP   81 (539)
Q Consensus         2 ~y~Yy~lpfC~p~~~~~~~~slGe~L~Gdr~~~S~y~i~f~~~~~c~~lC~~~~t~~~~~~~~~~I~~~Y~~~~~iD~LP   81 (539)
                      ||+||++|||+|++.++++|||||+|+|||++||||+++|++|++|+.+|+.++++++++.++|+|+++|++||.+||||
T Consensus        58 pY~YY~~~Fc~p~~i~~~~EnLGeVl~GDRi~nSPy~~~m~e~~~C~~lC~~k~~~~~~~~l~~~I~~~Y~v~wivDnlP  137 (628)
T KOG1278|consen   58 PYEYYSLPFCRPEKIKKQSENLGEVLRGDRIENSPYKFKMLENQPCETLCATKLDKEDAKLLKKLIREGYVVNWIVDNLP  137 (628)
T ss_pred             CcccccccccCccccCCcccchhceeccCcccCCCceEecccCCcchhhhcccCCHHHHHHHHHHHhhccEeeeeecCCc
Confidence            89999999999999899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeecccc------cCcccccc----cCCeEEEeeeEEEEEEEeC-----CeEEEEEEEeCCC-------------Ccc
Q 036992           82 IWGYIGKIE------DGSLVLSE----KGNKYYLFTRVQFDALYNG-----DQVVEIRAFSDPT-------------SVV  133 (539)
Q Consensus        82 ~~~~~g~~~------~~~~~~~~----~~~~~~l~NH~~f~I~yn~-----~~IV~~~v~~~~~-------------~~~  133 (539)
                      ++......+      +.|+|+|.    +.+++|++||++|+|+||+     +|||||||+|.+.             .++
T Consensus       138 va~~~~~~~~~~~~y~~GfplG~~~~~~~~~~y~~NHl~~~i~yH~~~~~~~riVgfeV~P~Si~~~~~~~~~~~~~~~c  217 (628)
T KOG1278|consen  138 VATRYERSDDGKVYYGTGFPLGFKGPKDEDKYYLHNHLDFVIRYHRDDNDKYRIVGFEVKPVSIKHEHEKGDSKNSLPTC  217 (628)
T ss_pred             eeEEEeecCCCceEeccCccceeccCCCccceeEeeeEEEEEEEEecCCCceEEEEEEEEeeeeecccCCCcccccCCcc
Confidence            876543322      34677763    4568899999999999995     4999999998542             123


Q ss_pred             cc-------CCCCceeEEEEEEEEEeecCcccchhhhhhcccCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036992          134 DI-------TDDIEINVKFTYSIVWSETSAQFETRMDKYSRASSLPTLHKIHWFSFINSIVFILLLMGLLILLILRRLKN  206 (539)
Q Consensus       134 ~~-------~~~~~~~i~fTYSV~w~~s~~~w~~Rwd~y~~~~~~~~~~~ihw~SiiNS~vivl~l~~~v~~Il~r~l~~  206 (539)
                      ++       ++++++++.|||||+|+|+|++|++|||.|+++.    +.|||||||+||+++|++|+++|++|++|||||
T Consensus       218 ~~~~~~~~~~e~~~~~i~fTYsV~f~esdi~WasRWD~yL~m~----~~qIhWfSIiNSlvIVlfLSgiv~mI~lRtl~r  293 (628)
T KOG1278|consen  218 SIPEKPLELDEGEETEIVFTYSVKFEESDIKWASRWDYYLHME----DVQIHWFSIINSLVIVLFLSGIVAMIMLRTLYR  293 (628)
T ss_pred             cCCCCccccCCCCceEEEEEEEEEEEeccCcchhhHHHHhcCC----CCceEEEehhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            33       3345678999999999999999999999999854    679999999999999999999999999999999


Q ss_pred             hhhccCCCCc--chhhccCceEEecccCCCCCCccceeeeecccchHHHHHHHHHHHHHhhccCcCCCchHHHHHHHHHH
Q 036992          207 DLRKCSSGDE--EEDKEVGWKYIHGDVFRYPQNISLFSAVMGVGNQLLTIVCILFVLAFLGILYPYNRGLLSTSLVLLYS  284 (539)
Q Consensus       207 D~~~y~~~~~--~~~ee~GWKlvhgDVFR~P~~~~lls~lvG~G~Qll~~~~~~~~~a~~g~~~~~~~g~l~t~~i~~y~  284 (539)
                      |++|||++|.  |.+||+|||+|||||||||+++++||++||+|+|+++|+++++++|++|+++|++||+++|+++++|+
T Consensus       294 DiarYne~d~~~d~~Ee~GWKLVhGDVFR~P~~~~lLsv~vGsGvQ~l~M~~vti~fA~lGflSPs~RGsLmT~~~~l~v  373 (628)
T KOG1278|consen  294 DIARYNELDLDDDAQEESGWKLVHGDVFRPPRNSMLLSVLVGSGVQLLGMILVTIFFACLGFLSPSSRGSLMTAMVLLFV  373 (628)
T ss_pred             hHhhhccccchhhhhhhcceEEeecccccCCCCCeEEEEEeccChhhhHHHHHHHHHHHhccCCccccccHHHHHHHHHH
Confidence            9999999665  34999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhhhhhhhhhhcCCcchhHHHHHHhhhhhHHHHHHHHHHHHHHHHhCCCCCcChhHHHHHHHHHHHhhhhhhhhh
Q 036992          285 LTSVVAGYITSSFHNQFSDAGWERSVFLAGILYFGPLTVTVLILNTVAVSYGATAALPFGTIMVIVFIYMLFAVPLLALG  364 (539)
Q Consensus       285 ~~~~i~Gy~s~~~yk~~~g~~W~~~~~lt~~l~P~~~~~~~~~~N~i~~~~~Ss~aipf~ti~~l~~lw~~v~~PL~~lG  364 (539)
                      ++|++|||+|+|+||+++|++||+++++|++++||+++++++++|++.|+++||+|+||+|+++++++|++||+||+++|
T Consensus       374 ~~G~~agY~s~rlyk~~~g~~wk~~~~lta~l~PGivf~~~f~lN~~lW~~~SSgAvPF~T~~~ll~LwF~isVPLsf~G  453 (628)
T KOG1278|consen  374 FMGFVAGYVSARLYKTFKGREWKRNAILTAFLFPGIVFAIFFVLNFFLWGKHSSGAVPFSTMVALLFLWFGISVPLSFVG  453 (628)
T ss_pred             HHHHhhhhhhhhhHhhhcCCcchhhHHhhhhhcchHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHhhhhHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhccccccCCCCCcccCCCCCCCCCCCCccCccchhhhcchhhHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHH
Q 036992          365 GRIGYWFRSEFQAPSALNRYPREIPPLPWYQKSPCQMFIVGLLSFSTIALELHHLYASLWGYKIFTPPGILFVMFIILLV  444 (539)
Q Consensus       365 ~~~g~~~~~~~~~P~~~n~ipR~IP~~p~y~~~~~~~l~~GilPF~~i~iEl~~i~~s~W~~~~y~~fgfL~~~~iil~i  444 (539)
                      +++|+| ++++++|+||||||||||+||||+++.+.+++||++||++||+||+||++|+|.+|+||+||||+++++||++
T Consensus       454 ~y~g~k-k~~~e~PvrTNqIpRqIP~q~~y~~~~~~ili~GilPFg~ifIELfFI~~SiW~~qfYY~FGFLFlvfiiLvv  532 (628)
T KOG1278|consen  454 GYFGFK-KPAIEHPVRTNQIPRQIPEQPWYLNPIPSILIAGILPFGAIFIELFFILSSIWLNQFYYMFGFLFLVFIILVV  532 (628)
T ss_pred             HHhhcc-CCCCCCCcccCCCcccCCCCccccchhhHHHhhcccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            999995 7788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhcccCCCCcccchhhhcCChhHHHHHHHHHhhhe-eecccccchhhHHHHHHHHHHHHHHHHhhhHHHH
Q 036992          445 LTAILSIGLTYIQLSVEDHEWWWRSVFRGGSTAIFMFAYSIYFYF-RSNMSGFLQLSFFLGYNAAMCYAFFLILGSISFR  523 (539)
Q Consensus       445 ~~a~vsI~~~Y~~L~~Edy~WwW~SF~~~gs~~~y~f~Ysi~y~~-~~~~~g~~~~~~yf~y~~l~s~~~~l~~G~iGfl  523 (539)
                      +|+|+||++||+|||+||||||||||++||++|+|+|+||++|++ |++++|++++++|||||++++++++++||||||+
T Consensus       533 tcaeisIvl~Yf~LC~Edy~WwWRsF~~sG~~avY~fiYsi~Y~~~kL~i~g~~s~~LYfgYsli~~~~~~l~tGtIGF~  612 (628)
T KOG1278|consen  533 TCAEISIVLTYFQLCAEDYNWWWRSFLTSGSSAVYVFIYSIFYFFTKLEISGFVSAVLYFGYSLIISLLFFLLTGTIGFL  612 (628)
T ss_pred             HHHHHHHHHHHHHHHhcccceeeeeeeccCcchhhHHHHHHhhhheeeeecccchhHHHHHHHHHHHHHHHHHhccHHHH
Confidence            999999999999999999999999999999999999999999999 9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhccCC
Q 036992          524 ASMIFVRRIYRVVKSE  539 (539)
Q Consensus       524 as~~Fv~~IY~~iK~D  539 (539)
                      ||+|||||||+++|+|
T Consensus       613 a~~~Fv~kIYssvKiD  628 (628)
T KOG1278|consen  613 AAFWFVRKIYSSVKID  628 (628)
T ss_pred             HHHHHHHHHhhheecC
Confidence            9999999999999998

>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter	Back alignment and domain information

>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		539
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 44.5 bits (104), Expect = 1e-04
 Identities = 59/381 (15%), Positives = 101/381 (26%), Gaps = 92/381 (24%)

Query: 4   QYYDLPFCRPEPIKWKKETLGEVLNGDRLASAL------YELKFLEA-----KTGVT--- 49
              D        I   +  L  +L      + L         K   A     K  +T   
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274

Query: 50  ------LCSKKLKVDEVAKFRKAVADD-----F--YFQMYYDDLPIWGYIGKIEDGS-LV 95
                 L +       +      +  D        Y      DLP      ++   +   
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-----EVLTTNPRR 329

Query: 96  LSEKGNKYYLFT-RVQFDALYNGDQVVEIRAFS----DPTSVVDITDDIEI---NVKF-- 145
           LS                   N D++  I   S    +P     + D + +   +     
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389

Query: 146 -TYSIVWSETSAQFETRMDKYSRASSLPTLHKIHWFSFINSI--VFILLLMGLLILLIL- 201
              S++W +        +       SL  + K        SI  +++ L + L     L 
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSL--VEK-QPKESTISIPSIYLELKVKLENEYALH 446

Query: 202 RRLK---NDLRKCSSGDEEEDKEVGW--KYI--HGDVFRYPQNISLFSAVMGVGNQLLTI 254
           R +    N  +   S D        +   +I  H     +P+ ++LF             
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM----------- 495

Query: 255 VCILFVLAFL-------GILYPYNRGLLSTSLVL-LYSLTSVVAGYITSSFHNQFSDAGW 306
             +     FL          +  +  +L+T   L  Y        YI        +D  +
Sbjct: 496 --VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK------PYICD------NDPKY 541

Query: 307 ERSVFLAGILYFGPLTVTVLI 327
           ER   +  IL F P     LI
Sbjct: 542 ER--LVNAILDFLPKIEENLI 560

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00