Citrus Sinensis ID: 037014

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
MAYAQSISFCGKIIETTVTSTTSVAENWLLKIRSLHSAQILIVGLNCKWKPHPIPSLSGKIATLQLCVDTKCLILQLLYMDCIPLSIKNFLSDPNVVFVGIEVEEIMSKLKNEYGLCIKKKIDVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPWKPKKVCMNNLESGFLDTELIKFACIDAYVSCAIGTKLLLEETQ
ccccEEEEEccEEEEEEEcccHHHHHHHHHHHHHHccccccEEEEEEEEccccccccccccEEEEEEEcccEEEEEcccccccHHHHHHHHccccEEEEEEEHHHHHHHHHHHHccccccEEEHHHHHHHHcccccccccHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
ccEEEEEEEcccEEEEEEcccHHHHHHHHHHHHHHcccccEEEEEEEEcccccccccccccEEEEEEccccEEEEEEEccccccHHHHHHHccccEEEEEEccHHHHHHHHHHcccEEccHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccc
MAYAQSISFCGKIIETTVTSTTSVAENWLLKIRSLHSAQILIVGlnckwkphpipslsgkiatLQLCVDTKCLILQLLYMdciplsiknflsdpnvvFVGIEVEEIMSKLKNEYGLCIKKKIDVRTLaklhfpisclgkpgLKVLAYQLlrlrpwkpkkvcmnnlesgfldteLIKFACIDAYVSCAIGTKLLLEETQ
MAYAQSISFCGKIIETTVTSTTSVAENWLLKIRSLHSAQILIVGLNCKWKPHPIPSLSGKIATLQLCVDTKCLILQLLYMDCIPLSIKNFLSDPNVVFVGIEVEEIMSKLKNEYGLCIKKKIDVRTLAKLHfpisclgkpgLKVLAYQLLRLRPWKPKKVCMNNLESGFLDTELIKFACIDAYVSCAIGTKLLLEETQ
MAYAQSISFCGKIIEttvtsttsvAENWLLKIRSLHSAQILIVGLNCKWKPHPIPSLSGKIATLQLCVDTKCLILQLLYMDCIPLSIKNFLSDPNVVFVGIEVEEIMSKLKNEYGLCIKKKIDVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPWKPKKVCMNNLESGFLDTELIKFACIDAYVSCAIGTKLLLEETQ
*****SISFCGKIIETTVTSTTSVAENWLLKIRSLHSAQILIVGLNCKWKPHPIPSLSGKIATLQLCVDTKCLILQLLYMDCIPLSIKNFLSDPNVVFVGIEVEEIMSKLKNEYGLCIKKKIDVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPWKPKKVCMNNLESGFLDTELIKFACIDAYVSCAIGTKLLL****
**YAQSISFCGKIIETTVTSTTSVAENWLLKIRSLHSAQILIVGLNCKWKPHPIPSLSGKIATLQLCVDTKCLILQLLYMDCIPLSIKNFLSDPNVVFVGIEVEEIMSKLKNEYGLCIKKKIDVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPWKPKKVCMNNLESGFLDTELIKFACIDAYVSCAIGTKLLLEE**
MAYAQSISFCGKIIETTVTSTTSVAENWLLKIRSLHSAQILIVGLNCKWKPHPIPSLSGKIATLQLCVDTKCLILQLLYMDCIPLSIKNFLSDPNVVFVGIEVEEIMSKLKNEYGLCIKKKIDVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPWKPKKVCMNNLESGFLDTELIKFACIDAYVSCAIGTKLLLEETQ
MAYAQSISFCGKIIETTVTSTTSVAENWLLKIRSLHSAQILIVGLNCKWKPHPIPSLSGKIATLQLCVDTKCLILQLLYMDCIPLSIKNFLSDPNVVFVGIEVEEIMSKLKNEYGLCIKKKIDVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPWKPKKVCMNNLESGFLDTELIKFACIDAYVSCAIGTKLLLEE**
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MAYAQSISFCGKIIETTVTSTTSVAENWLLKIRSLHSAQILIVGLNCKWKPHPIPSLSGKIATLQLCVDTKCLILQLLYMDCIPLSIKNFLSDPNVVFVGIEVEEIMSKLKNEYGLCIKKKIDVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPWKPKKVCMNNLESGFLDTELIKFACIDAYVSCAIGTKLLLEETQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query198 2.2.26 [Sep-21-2011]
Q84LH3288 Werner Syndrome-like exon no no 0.898 0.618 0.289 3e-13
O93530 1436 Werner syndrome ATP-depen N/A no 0.752 0.103 0.276 1e-07
Q5UQM4 399 Putative 3'-5' exonucleas N/A no 0.868 0.431 0.258 7e-07
Q9NVH0 621 Exonuclease 3'-5' domain- yes no 0.737 0.235 0.273 4e-05
O09053 1401 Werner syndrome ATP-depen yes no 0.904 0.127 0.25 5e-05
Q14191 1432 Werner syndrome ATP-depen no no 0.934 0.129 0.248 9e-05
B3LWP6355 Werner Syndrome-like exon N/A no 0.944 0.526 0.229 0.0009
>sp|Q84LH3|WEX_ARATH Werner Syndrome-like exonuclease OS=Arabidopsis thaliana GN=WEX PE=1 SV=1 Back     alignment and function desciption
 Score = 74.7 bits (182), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 5/183 (2%)

Query: 6   SISFCGKIIETTVTSTTSVAENWLLKI--RSLHSAQILIVGLNCKWKPHPIPS-LSGKIA 62
           ++ F G+I+ +   +        L+K+       + I  VGL+ +W+P      L GK+A
Sbjct: 91  AMRFGGRILYSKTATEVDKRAMQLIKVLDTKRDESGIAFVGLDIEWRPSFRKGVLPGKVA 150

Query: 63  TLQLCVDTKCLILQLLYMDCIPLSIKNFLSDPNVVFVGIEVEEIMSKLKNEYGLCIKKKI 122
           T+Q+CVD+    +  ++   IP S+++ + D  +V VGI ++    KL ++YG+ IK   
Sbjct: 151 TVQICVDSNYCDVMHIFHSGIPQSLQHLIEDSTLVKVGIGIDGDSVKLFHDYGVSIKDVE 210

Query: 123 DVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPWKPKKVCMNNLESGFLDTELIKFACIDA 182
           D+  LA     I    K GL  L   L+     KP ++ + N E   L  + +++A  DA
Sbjct: 211 DLSDLANQK--IGGDKKWGLASLTETLVCKELLKPNRIRLGNWEFYPLSKQQLQYAATDA 268

Query: 183 YVS 185
           Y S
Sbjct: 269 YAS 271
Exonuclease that digests recessed strands of DNA duplexes in the 3' to 5' direction but hardly single-stranded DNA or blunt-ended duplexes. Also able to digest 3'-protruding strands and 3'-recessed strand termini of duplexes containing mismatched bases.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -
>sp|O93530|WRN_XENLA Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis GN=wrn PE=2 SV=1 Back     alignment and function description
>sp|Q5UQM4|YR431_MIMIV Putative 3'-5' exonuclease R431 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R431 PE=4 SV=1 Back     alignment and function description
>sp|Q9NVH0|EXD2_HUMAN Exonuclease 3'-5' domain-containing protein 2 OS=Homo sapiens GN=EXD2 PE=1 SV=2 Back     alignment and function description
>sp|O09053|WRN_MOUSE Werner syndrome ATP-dependent helicase homolog OS=Mus musculus GN=Wrn PE=1 SV=3 Back     alignment and function description
>sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2 Back     alignment and function description
>sp|B3LWP6|WRNXO_DROAN Werner Syndrome-like exonuclease OS=Drosophila ananassae GN=WRNexo PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query198
225450557210 PREDICTED: Werner Syndrome-like exonucle 0.959 0.904 0.502 3e-48
225450559208 PREDICTED: Werner Syndrome-like exonucle 0.959 0.913 0.492 1e-46
147818277219 hypothetical protein VITISV_026723 [Viti 0.959 0.867 0.492 1e-46
225437612196 PREDICTED: Werner Syndrome-like exonucle 0.984 0.994 0.476 3e-43
147818276196 hypothetical protein VITISV_026722 [Viti 0.848 0.857 0.470 5e-38
413947987214 hypothetical protein ZEAMMB73_312807 [Ze 0.954 0.883 0.408 1e-33
115438991199 Os01g0660800 [Oryza sativa Japonica Grou 0.954 0.949 0.371 4e-32
357120544199 PREDICTED: Werner Syndrome-like exonucle 0.934 0.929 0.412 2e-31
225440183213 PREDICTED: Werner Syndrome-like exonucle 0.929 0.863 0.358 4e-30
115436116201 Os01g0300000 [Oryza sativa Japonica Grou 0.954 0.940 0.364 6e-30
>gi|225450557|ref|XP_002277523.1| PREDICTED: Werner Syndrome-like exonuclease-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 96/191 (50%), Positives = 133/191 (69%), Gaps = 1/191 (0%)

Query: 6   SISFCGKIIETTVTSTTSVAENWLLKIRSLHSAQILIVGLNCKWKPHPIPSLSGKIATLQ 65
           S+   GK IETT+T   ++A+ W+ +I S+H+ + ++VGL+ +W+PHPI S+S K ATLQ
Sbjct: 21  SVILAGKTIETTLTDKAAIADEWVREILSIHAGKPMVVGLDIEWRPHPIRSMSNKSATLQ 80

Query: 66  LCVDTKCLILQLLYMDCIPLSIKNFLSDPNVVFVGIEVEEIMSKLKNEYGLCIKKKIDVR 125
           LC+D KCLILQL YMD IP S+K+FL+D N  FVGIEV + ++KLKNEYGL   +  D+R
Sbjct: 81  LCIDDKCLILQLFYMDEIPESLKSFLADSNFTFVGIEVGDDIAKLKNEYGLDCSRSADIR 140

Query: 126 TLAKLHFPISCLGKPGLKVLAYQLLRLRPWKPKKVCMNNLESGFLDTELIKFACIDAYVS 185
            LA   +P     +PGLK LA+++  L   KPK V M+N E+  L    I++ACIDAY S
Sbjct: 141 DLAMQRWP-GRFRRPGLKDLAWEVTNLPMKKPKHVSMSNWEARVLSENQIEYACIDAYAS 199

Query: 186 CAIGTKLLLEE 196
             IG KL++E+
Sbjct: 200 YKIGHKLIIEK 210

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225450559|ref|XP_002277541.1| PREDICTED: Werner Syndrome-like exonuclease-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147818277|emb|CAN64722.1| hypothetical protein VITISV_026723 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225437612|ref|XP_002271430.1| PREDICTED: Werner Syndrome-like exonuclease-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147818276|emb|CAN64721.1| hypothetical protein VITISV_026722 [Vitis vinifera] Back     alignment and taxonomy information
>gi|413947987|gb|AFW80636.1| hypothetical protein ZEAMMB73_312807 [Zea mays] Back     alignment and taxonomy information
>gi|115438991|ref|NP_001043775.1| Os01g0660800 [Oryza sativa Japonica Group] gi|55773822|dbj|BAD72360.1| hypothetical protein [Oryza sativa Japonica Group] gi|55773961|dbj|BAD72488.1| hypothetical protein [Oryza sativa Japonica Group] gi|113533306|dbj|BAF05689.1| Os01g0660800 [Oryza sativa Japonica Group] gi|125527143|gb|EAY75257.1| hypothetical protein OsI_03144 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|357120544|ref|XP_003561987.1| PREDICTED: Werner Syndrome-like exonuclease-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|225440183|ref|XP_002278250.1| PREDICTED: Werner Syndrome-like exonuclease [Vitis vinifera] Back     alignment and taxonomy information
>gi|115436116|ref|NP_001042816.1| Os01g0300000 [Oryza sativa Japonica Group] gi|14495214|dbj|BAB60933.1| unknown protein [Oryza sativa Japonica Group] gi|15623802|dbj|BAB67862.1| unknown protein [Oryza sativa Japonica Group] gi|113532347|dbj|BAF04730.1| Os01g0300000 [Oryza sativa Japonica Group] gi|125525536|gb|EAY73650.1| hypothetical protein OsI_01539 [Oryza sativa Indica Group] gi|125570051|gb|EAZ11566.1| hypothetical protein OsJ_01433 [Oryza sativa Japonica Group] gi|215686527|dbj|BAG88780.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query198
TAIR|locus:2053519239 AT2G36110 [Arabidopsis thalian 0.883 0.732 0.307 1.6e-15
TAIR|locus:2092497185 AT3G12420 [Arabidopsis thalian 0.368 0.394 0.437 4.9e-14
TAIR|locus:2119525288 WRNEXO "Werner syndrome-like e 0.893 0.614 0.293 1.4e-13
TAIR|locus:2092472220 AT3G12470 [Arabidopsis thalian 0.611 0.55 0.320 6.4e-12
ZFIN|ZDB-GENE-070702-2 1436 wrn "Werner syndrome" [Danio r 0.747 0.103 0.298 3.3e-11
TAIR|locus:2092482230 AT3G12410 [Arabidopsis thalian 0.681 0.586 0.317 2.3e-10
FB|FBgn0037901 583 CG6744 [Drosophila melanogaste 0.792 0.269 0.279 5.1e-10
UNIPROTKB|O93530 1436 wrn "Werner syndrome ATP-depen 0.747 0.103 0.300 5.7e-09
UNIPROTKB|F1NAR0 1367 F1NAR0 "Uncharacterized protei 0.747 0.108 0.284 1.4e-08
ZFIN|ZDB-GENE-030131-6387 617 exd2 "exonuclease 3'-5' domain 0.792 0.254 0.292 8.7e-08
TAIR|locus:2053519 AT2G36110 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 59/192 (30%), Positives = 90/192 (46%)

Query:     7 ISFCGKIIEXXXXXXXXXAENWLLKIR---SLHSAQILIVGLNCKWKP---HPIPSLSGK 60
             I F G+ +             W+  IR    L S+  L+VGL+ +W P    P P +   
Sbjct:    19 IDFFGERLIVTVTHTTSTIRRWIHSIRFFSRLRSSHPLVVGLDVQWTPGGSDPPPDI--- 75

Query:    61 IATLQLCVDTKCLILQLLYMDCIPLSIKNFLSDPNVVFVGIEVEEIMSKLKN-EYGLCIK 119
                LQLCV  +CLI+QL +   IP  +++FL D  + FVG+   +   KL+   + L I 
Sbjct:    76 ---LQLCVGNRCLIIQLSHCKRIPEVLRSFLEDETITFVGVWNSQDQGKLERFRHQLEIW 132

Query:   120 KKIDVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPWKPKKVCMNNLESGFLDTELIKFAC 179
             + +D+R         S   K   + L Y+ +R    K K++CM+N  +  L  + I  A 
Sbjct:   133 RLLDIRHYLPTRLLNSSFEKIVEECLGYKGVR----KDKEICMSNWGARSLSHDQIVQAS 188

Query:   180 IDAYVSCAIGTK 191
              D YV C +G K
Sbjct:   189 DDVYVCCKLGVK 200
GO:0003676 "nucleic acid binding" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA
GO:0008408 "3'-5' exonuclease activity" evidence=IEA;ISS
TAIR|locus:2092497 AT3G12420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119525 WRNEXO "Werner syndrome-like exonuclease" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092472 AT3G12470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070702-2 wrn "Werner syndrome" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TAIR|locus:2092482 AT3G12410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0037901 CG6744 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|O93530 wrn "Werner syndrome ATP-dependent helicase homolog" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|F1NAR0 F1NAR0 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-6387 exd2 "exonuclease 3'-5' domain containing 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query198
cd06141170 cd06141, WRN_exo, DEDDy 3'-5' exonuclease domain o 2e-39
smart00474172 smart00474, 35EXOc, 3'-5' exonuclease 2e-04
cd06146193 cd06146, mut-7_like_exo, DEDDy 3'-5' exonuclease d 5e-04
cd06129161 cd06129, RNaseD_like, DEDDy 3'-5' exonuclease doma 0.002
>gnl|CDD|176653 cd06141, WRN_exo, DEDDy 3'-5' exonuclease domain of WRN and similar proteins Back     alignment and domain information 
 Score =  132 bits (334), Expect = 2e-39
 Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 6/175 (3%)

Query: 19  TSTTSVAENWLLKIRSLHSAQILIVGLNCKWKPHPIPSLSGKIATLQLCVDTKCLILQLL 78
           T +   AE  + ++         +VG + +W+P        K+A LQL  +++CL+ QL 
Sbjct: 1   TDSAQDAEEAVKELLGKE----KVVGFDTEWRPSFRKGKRNKVALLQLATESRCLLFQLA 56

Query: 79  YMDCIPLSIKNFLSDPNVVFVGIEVEEIMSKLKNEYGLCIKKKIDVRTLAKLHFPISCLG 138
           +MD +P S+K  L DP+++ VG+ ++    KL  ++G+ ++  +D+  LAK   P     
Sbjct: 57  HMDKLPPSLKQLLEDPSILKVGVGIKGDARKLARDFGIEVRGVVDLSHLAKRVGP--RRK 114

Query: 139 KPGLKVLAYQLLRLRPWKPKKVCMNNLESGFLDTELIKFACIDAYVSCAIGTKLL 193
              L  L  ++L L   KPKKV  +N E+  L  E I +A  DAY S  +  KLL
Sbjct: 115 LVSLARLVEEVLGLPLSKPKKVRCSNWEARPLSKEQILYAATDAYASLELYRKLL 169

WRN is a unique RecQ DNA helicase exhibiting an exonuclease activity. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. Mutations in the WRN gene cause Werner syndrome, an autosomal recessive disorder associated with premature aging and increased susceptibility to cancer and type II diabetes. WRN interacts with key proteins involved in DNA replication, recombination, and repair. It is believed to maintain genomic stability and life span by participating in DNA processes. WRN is stimulated by Ku70/80, an important regulator of genomic stability. Length = 170
>gnl|CDD|214681 smart00474, 35EXOc, 3'-5' exonuclease Back     alignment and domain information
>gnl|CDD|176655 cd06146, mut-7_like_exo, DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins Back     alignment and domain information
>gnl|CDD|176650 cd06129, RNaseD_like, DEDDy 3'-5' exonuclease domain of RNase D, WRN, and similar proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 198
cd06146193 mut-7_like_exo DEDDy 3'-5' exonuclease domain of C 100.0
cd06141170 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and 100.0
cd06129161 RNaseD_like DEDDy 3'-5' exonuclease domain of RNas 100.0
PRK10829 373 ribonuclease D; Provisional 100.0
PF01612176 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR00 100.0
cd06148197 Egl_like_exo DEDDy 3'-5' exonuclease domain of Dro 99.98
COG0349 361 Rnd Ribonuclease D [Translation, ribosomal structu 99.97
TIGR01388 367 rnd ribonuclease D. This model describes ribonucle 99.97
KOG4373319 consensus Predicted 3'-5' exonuclease [General fun 99.94
cd06142178 RNaseD_exo DEDDy 3'-5' exonuclease domain of Ribon 99.91
smart00474172 35EXOc 3'-5' exonuclease. 3\' -5' exonuclease proo 99.9
KOG2207617 consensus Predicted 3'-5' exonuclease [Replication 99.89
cd09018150 DEDDy_polA_RNaseD_like_exo DEDDy 3'-5' exonuclease 99.85
cd06147192 Rrp6p_like_exo DEDDy 3'-5' exonuclease domain of y 99.83
cd00007155 35EXOc 3'-5' exonuclease. The 35EXOc domain is res 99.82
KOG2206 687 consensus Exosome 3'-5' exoribonuclease complex, s 99.74
PRK05755 880 DNA polymerase I; Provisional 99.69
cd06140178 DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5' 99.61
cd06139193 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease 99.56
PRK14975 553 bifunctional 3'-5' exonuclease/DNA polymerase; Pro 99.41
COG0749 593 PolA DNA polymerase I - 3'-5' exonuclease and poly 99.38
TIGR00593 887 pola DNA polymerase I. This family is based on the 99.1
cd06128151 DNA_polA_exo DEDDy 3'-5' exonuclease domain of fam 98.91
cd0612596 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonucleas 98.14
KOG2249280 consensus 3'-5' exonuclease [Replication, recombin 97.94
cd05780195 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease dom 97.93
cd06149157 ISG20 DEDDh 3'-5' exonuclease domain of Interferon 97.84
cd05160199 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain 97.78
cd06144152 REX4_like DEDDh 3'-5' exonuclease domain of RNA ex 97.73
PRK05711240 DNA polymerase III subunit epsilon; Provisional 97.55
cd06143174 PAN2_exo DEDDh 3'-5' exonuclease domain of the euk 97.48
PRK06310250 DNA polymerase III subunit epsilon; Validated 97.43
cd06137161 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the 97.41
cd06145150 REX1_like DEDDh 3'-5' exonuclease domain of RNA ex 97.31
PRK06807 313 DNA polymerase III subunit epsilon; Validated 97.28
PRK07883 557 hypothetical protein; Validated 97.26
PRK07740244 hypothetical protein; Provisional 97.21
cd06134189 RNaseT DEDDh 3'-5' exonuclease domain of RNase T. 97.2
TIGR01406225 dnaQ_proteo DNA polymerase III, epsilon subunit, P 97.19
PRK06063 313 DNA polymerase III subunit epsilon; Provisional 97.12
PRK08517257 DNA polymerase III subunit epsilon; Provisional 97.11
PRK07942232 DNA polymerase III subunit epsilon; Provisional 97.1
TIGR00573217 dnaq exonuclease, DNA polymerase III, epsilon subu 97.07
PRK06309232 DNA polymerase III subunit epsilon; Validated 97.06
cd05777230 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain 97.01
cd06131167 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonucl 96.97
smart00479169 EXOIII exonuclease domain in DNA-polymerase alpha 96.89
PRK07246 820 bifunctional ATP-dependent DNA helicase/DNA polyme 96.86
cd06127159 DEDDh DEDDh 3'-5' exonuclease domain family. DEDDh 96.85
TIGR01407 850 dinG_rel DnaQ family exonuclease/DinG family helic 96.84
PRK05168211 ribonuclease T; Provisional 96.83
KOG3657 1075 consensus Mitochondrial DNA polymerase gamma, cata 96.77
PRK08074 928 bifunctional ATP-dependent DNA helicase/DNA polyme 96.73
cd05784193 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of 96.72
cd05781188 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of 96.68
PRK09145202 DNA polymerase III subunit epsilon; Validated 96.66
KOG2248380 consensus 3'-5' exonuclease [Replication, recombin 96.48
PRK07983219 exodeoxyribonuclease X; Provisional 96.4
cd06136177 TREX1_2 DEDDh 3'-5' exonuclease domain of three pr 96.38
PRK06195 309 DNA polymerase III subunit epsilon; Validated 96.36
PRK07247195 DNA polymerase III subunit epsilon; Validated 96.34
TIGR01405 1213 polC_Gram_pos DNA polymerase III, alpha chain, Gra 96.29
cd05783204 DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of 96.28
PRK09146239 DNA polymerase III subunit epsilon; Validated 96.21
PRK05601 377 DNA polymerase III subunit epsilon; Validated 96.19
PRK07748207 sporulation inhibitor KapD; Provisional 96.02
PHA02528 881 43 DNA polymerase; Provisional 95.96
cd05785207 DNA_polB_like2_exo Uncharacterized bacterial subgr 95.67
cd05779204 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domai 95.67
cd06133176 ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain o 95.51
PF13482164 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 95.01
KOG12751118 consensus PAB-dependent poly(A) ribonuclease, subu 94.94
TIGR01298200 RNaseT ribonuclease T. in gamma-subdivision Proteo 94.21
cd06130156 DNA_pol_III_epsilon_like an uncharacterized bacter 93.76
COG0847243 DnaQ DNA polymerase III, epsilon subunit and relat 93.36
PRK09182294 DNA polymerase III subunit epsilon; Validated 93.19
cd05782208 DNA_polB_like1_exo Uncharacterized bacterial subgr 93.18
PRK05762 786 DNA polymerase II; Reviewed 93.03
PRK06722281 exonuclease; Provisional 92.58
PRK11779 476 sbcB exonuclease I; Provisional 92.55
COG2176 1444 PolC DNA polymerase III, alpha subunit (gram-posit 92.54
PTZ00166 1054 DNA polymerase delta catalytic subunit; Provisiona 92.01
PRK00448 1437 polC DNA polymerase III PolC; Validated 91.56
KOG2405 458 consensus Predicted 3'-5' exonuclease [Replication 90.63
KOG2405458 consensus Predicted 3'-5' exonuclease [Replication 89.65
PF10108209 DNA_pol_B_exo2: Predicted 3'-5' exonuclease relate 88.66
smart00486 471 POLBc DNA polymerase type-B family. DNA polymerase 86.18
cd05778231 DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease 84.63
cd06138183 ExoI_N N-terminal DEDDh 3'-5' exonuclease domain o 80.15
>cd06146 mut-7_like_exo DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins Back     alignment and domain information 
Probab=100.00  E-value=5.2e-41  Score=265.19  Aligned_cols=171  Identities=25%  Similarity=0.347  Sum_probs=149.5

Q ss_pred             EEcCCHHHHHHHHHH--HHhhccCCCeEEEEeeeecCCCCCCCCCceeEEEeeeCCeEEEEEccccC-----cccHHHHH
Q 037014           17 TVTSTTSVAENWLLK--IRSLHSAQILIVGLNCKWKPHPIPSLSGKIATLQLCVDTKCLILQLLYMD-----CIPLSIKN   89 (198)
Q Consensus        17 ~v~~~~~~~~~~i~~--~~~~~~~~~~~vg~D~Ew~~~~~~~~~~~~~liQla~~~~~~i~~l~~~~-----~~~~~L~~   89 (198)
                      .++++++++++++..  +..     .++||||+||.+.+..+..+++|+||||+++.|||||+...+     .+|+.|++
T Consensus         2 ~~i~~~~el~~~~~~~~l~~-----~~vig~D~Ew~~~~~~~~~~~v~LiQiat~~~~~lid~~~~~~~~~~~~~~~L~~   76 (193)
T cd06146           2 HIVDSEEELEALLLALSLEA-----GRVVGIDSEWKPSFLGDSDPRVAILQLATEDEVFLLDLLALENLESEDWDRLLKR   76 (193)
T ss_pred             eEecCHHHHHHHHHHHhhcc-----CCEEEEECccCCCccCCCCCCceEEEEecCCCEEEEEchhccccchHHHHHHHHH
Confidence            356799999999999  444     599999999999865556899999999999999999998754     47789999


Q ss_pred             hhcCCCeEEEEEeecchHHHHhhhcCC------ccCceeehHHHHHHhCCCC--------CCCCchHHHHHHHHcCCcCC
Q 037014           90 FLSDPNVVFVGIEVEEIMSKLKNEYGL------CIKKKIDVRTLAKLHFPIS--------CLGKPGLKVLAYQLLRLRPW  155 (198)
Q Consensus        90 lL~d~~i~kvG~~~~~D~~~L~~~~gi------~~~~~~Dl~~l~~~~l~~~--------~~~~~~L~~l~~~~l~~~l~  155 (198)
                      +|+||+|+||||++++|++.|++.||+      .++|++|++.++....+..        .....||++||+++||.+++
T Consensus        77 ll~d~~i~KVg~~~~~D~~~L~~~~~~~~~~~~~~~~v~Dl~~~a~~l~~~~~~~~~~~~~~~~~sL~~l~~~~lg~~l~  156 (193)
T cd06146          77 LFEDPDVLKLGFGFKQDLKALSASYPALKCMFERVQNVLDLQNLAKELQKSDMGRLKGNLPSKTKGLADLVQEVLGKPLD  156 (193)
T ss_pred             HhCCCCeeEEEechHHHHHHHHHhcCccccccccCCceEEHHHHHHHHhhccccccccccCcccCCHHHHHHHHhCCCcC
Confidence            999999999999999999999999987      4789999999887543210        02378999999999999999


Q ss_pred             CCCceeccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhc
Q 037014          156 KPKKVCMNNLESGFLDTELIKFACIDAYVSCAIGTKLLL  194 (198)
Q Consensus       156 K~~~~~~s~W~~~~L~~~Qi~YAA~Da~~~~~l~~~L~~  194 (198)
                      |.  .++|||++||||++|+.|||.|||+++.||++|.+
T Consensus       157 K~--~q~SdW~~rpLs~~Qi~YAA~Da~~l~~l~~~L~~  193 (193)
T cd06146         157 KS--EQCSNWERRPLREEQILYAALDAYCLLEVFDKLLE  193 (193)
T ss_pred             cc--cccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            95  58999999999999999999999999999999974

The mut-7 subfamily is composed of Caenorhabditis elegans mut-7 and similar proteins found in plants and metazoans. Mut-7 is implicated in posttranscriptional gene silencing. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs, termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis.
>cd06141 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and similar proteins Back     alignment and domain information
>cd06129 RNaseD_like DEDDy 3'-5' exonuclease domain of RNase D, WRN, and similar proteins Back     alignment and domain information
>PRK10829 ribonuclease D; Provisional Back     alignment and domain information
>PF01612 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR002562 This domain is responsible for the 3'-5' exonuclease proofreading activity of Escherichia coli DNA polymerase I (polI) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides Back     alignment and domain information
>cd06148 Egl_like_exo DEDDy 3'-5' exonuclease domain of Drosophila Egalitarian (Egl) and similar proteins Back     alignment and domain information
>COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01388 rnd ribonuclease D Back     alignment and domain information
>KOG4373 consensus Predicted 3'-5' exonuclease [General function prediction only] Back     alignment and domain information
>cd06142 RNaseD_exo DEDDy 3'-5' exonuclease domain of Ribonuclease D and similar proteins Back     alignment and domain information
>smart00474 35EXOc 3'-5' exonuclease Back     alignment and domain information
>KOG2207 consensus Predicted 3'-5' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>cd09018 DEDDy_polA_RNaseD_like_exo DEDDy 3'-5' exonuclease domain of family-A DNA polymerases, RNase D, WRN, and similar proteins Back     alignment and domain information
>cd06147 Rrp6p_like_exo DEDDy 3'-5' exonuclease domain of yeast Rrp6p, human polymyositis/scleroderma autoantigen 100kDa, and similar proteins Back     alignment and domain information
>cd00007 35EXOc 3'-5' exonuclease Back     alignment and domain information
>KOG2206 consensus Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05755 DNA polymerase I; Provisional Back     alignment and domain information
>cd06140 DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5' exonuclease domain of Bacillus stearothermophilus DNA polymerase I and similar family-A DNA polymerases Back     alignment and domain information
>cd06139 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases Back     alignment and domain information
>PRK14975 bifunctional 3'-5' exonuclease/DNA polymerase; Provisional Back     alignment and domain information
>COG0749 PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00593 pola DNA polymerase I Back     alignment and domain information
>cd06128 DNA_polA_exo DEDDy 3'-5' exonuclease domain of family-A DNA polymerases Back     alignment and domain information
>cd06125 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily Back     alignment and domain information
>KOG2249 consensus 3'-5' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>cd05780 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases Back     alignment and domain information
>cd06149 ISG20 DEDDh 3'-5' exonuclease domain of Interferon Stimulated Gene product of 20 kDa, and similar proteins Back     alignment and domain information
>cd05160 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain of family-B DNA polymerases Back     alignment and domain information
>cd06144 REX4_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins Back     alignment and domain information
>PRK05711 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>cd06143 PAN2_exo DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonuclease PAN2 Back     alignment and domain information
>PRK06310 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06137 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins Back     alignment and domain information
>cd06145 REX1_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins Back     alignment and domain information
>PRK06807 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK07883 hypothetical protein; Validated Back     alignment and domain information
>PRK07740 hypothetical protein; Provisional Back     alignment and domain information
>cd06134 RNaseT DEDDh 3'-5' exonuclease domain of RNase T Back     alignment and domain information
>TIGR01406 dnaQ_proteo DNA polymerase III, epsilon subunit, Proteobacterial Back     alignment and domain information
>PRK06063 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>PRK08517 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>PRK07942 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family Back     alignment and domain information
>PRK06309 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd05777 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase Back     alignment and domain information
>cd06131 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins Back     alignment and domain information
>smart00479 EXOIII exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06127 DEDDh DEDDh 3'-5' exonuclease domain family Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>PRK05168 ribonuclease T; Provisional Back     alignment and domain information
>KOG3657 consensus Mitochondrial DNA polymerase gamma, catalytic subunit [Replication, recombination and repair] Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd05784 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases Back     alignment and domain information
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases Back     alignment and domain information
>PRK09145 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>KOG2248 consensus 3'-5' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>PRK07983 exodeoxyribonuclease X; Provisional Back     alignment and domain information
>cd06136 TREX1_2 DEDDh 3'-5' exonuclease domain of three prime repair exonuclease (TREX)1, TREX2, and similar proteins Back     alignment and domain information
>PRK06195 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK07247 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type Back     alignment and domain information
>cd05783 DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of Sulfolobus solfataricus DNA polymerase B1 and similar archaeal family-B DNA polymerases Back     alignment and domain information
>PRK09146 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK05601 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK07748 sporulation inhibitor KapD; Provisional Back     alignment and domain information
>PHA02528 43 DNA polymerase; Provisional Back     alignment and domain information
>cd05785 DNA_polB_like2_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases Back     alignment and domain information
>cd05779 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon, a family-B DNA polymerase Back     alignment and domain information
>cd06133 ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins Back     alignment and domain information
>PF13482 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 2AJQ_F 1T8E_A 1T7P_A 1SKR_A 1X9W_A 1TK8_A 1TK0_A 1SL2_A Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>TIGR01298 RNaseT ribonuclease T Back     alignment and domain information
>cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III Back     alignment and domain information
>COG0847 DnaQ DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK09182 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd05782 DNA_polB_like1_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases Back     alignment and domain information
>PRK05762 DNA polymerase II; Reviewed Back     alignment and domain information
>PRK06722 exonuclease; Provisional Back     alignment and domain information
>PRK11779 sbcB exonuclease I; Provisional Back     alignment and domain information
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair] Back     alignment and domain information
>PTZ00166 DNA polymerase delta catalytic subunit; Provisional Back     alignment and domain information
>PRK00448 polC DNA polymerase III PolC; Validated Back     alignment and domain information
>KOG2405 consensus Predicted 3'-5' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>KOG2405 consensus Predicted 3'-5' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>PF10108 DNA_pol_B_exo2: Predicted 3'-5' exonuclease related to the exonuclease domain of PolB; InterPro: IPR019288 This entry represents various prokaryotic 3'-5' exonucleases and hypothetical proteins Back     alignment and domain information
>smart00486 POLBc DNA polymerase type-B family Back     alignment and domain information
>cd05778 DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta, a family-B DNA polymerase Back     alignment and domain information
>cd06138 ExoI_N N-terminal DEDDh 3'-5' exonuclease domain of Escherichia coli exonuclease I and similar proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query198
2e6l_A208 Structure Of Mouse Wrn Exonuclease Domain Length = 2e-06
2fbt_A205 Wrn Exonuclease Length = 205 4e-06
>pdb|2E6L|A Chain A, Structure Of Mouse Wrn Exonuclease Domain Length = 208 Back     alignment and structure 
Iteration: 1

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 70/152 (46%), Gaps = 3/152 (1%)
Query: 42  IVGLNCKWKPHPIPSLSGKIATLQLCV-DTKCLILQLLYMDCIPLSIKNFLSDPNVVFVG 100
           +VG + +W P   P    ++A +QLCV ++KC +  +  M   P  +K  L + ++   G
Sbjct: 42  VVGFDMEWPPIYKPGKRSRVAVIQLCVSESKCYLFHISSMSVFPQGLKMLLENKSIKKAG 101
Query: 101 IEVEEIMSKLKNEYGLCIKKKIDVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPWKPKKV 160
           + +E    KL  ++ + ++  +++  +A  +  + C     L  L   +L  +  K K +
Sbjct: 102 VGIEGDQWKLLRDFDVKLESFVELTDVA--NEKLKCAETWSLNGLVKHVLGKQLLKDKSI 159
Query: 161 CMNNLESGFLDTELIKFACIDAYVSCAIGTKL 192
             +N  +  L  +   +A  DAY    I  KL
Sbjct: 160 RCSNWSNFPLTEDQKLYAATDAYAGLIIYQKL 191
>pdb|2FBT|A Chain A, Wrn Exonuclease Length = 205 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query198
1vk0_A206 Hypothetical protein; homohexamer, AT5G06450, stru 1e-36
2e6m_A208 Werner syndrome ATP-dependent helicase homolog; AP 7e-28
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A Length = 206 Back     alignment and structure
 Score =  125 bits (316), Expect = 1e-36
 Identities = 36/195 (18%), Positives = 68/195 (34%), Gaps = 12/195 (6%)

Query: 11  GKIIETTVTSTTSVAENWLLK---IRSLHSAQILIVGLNCKWKP------HPIPSLSGKI 61
           G  ++T      S  +                   V  +  W            +    +
Sbjct: 14  GSYVQTKTIDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSL 73

Query: 62  ATLQLCVDTKCLILQLL-YMDCIPLSIKNFLSDPNVVFVGIEVEEIMSKLKNEYGLCIKK 120
           ++++L     CL L+L          +  F +   V FVG+++EE +  L+  +GL I+ 
Sbjct: 74  SSVKLSTRNLCLFLRLPKPFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRN 133

Query: 121 KIDVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPWKPKKVCMNNLESGFLDTELIKFACI 180
            I+V  LA        L   G + LA+++L               E      E ++ A I
Sbjct: 134 AINVGKLAAEARGTLVLEFLGTRELAHRVLWSDL-GQLDSIEAKWEKA-GPEEQLEAAAI 191

Query: 181 DAYVSCAIGTKLLLE 195
           + ++   +  +L  E
Sbjct: 192 EGWLIVNVWDQLSDE 206
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A* Length = 208 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query198
1vk0_A206 Hypothetical protein; homohexamer, AT5G06450, stru 100.0
2e6m_A208 Werner syndrome ATP-dependent helicase homolog; AP 100.0
3saf_A 428 Exosome component 10; exoribonuclease, RNA exosome 99.97
2hbj_A 410 Exosome complex exonuclease RRP6; RNA metabolism, 99.96
1yt3_A 375 Ribonuclease D, RNAse D; exoribonuclease, exonucle 99.95
3cym_A 440 Uncharacterized protein BAD_0989; structural genom 99.91
2kfn_A 605 Klenow fragment of DNA polymerase I; complex (poly 99.78
3pv8_A 592 DNA polymerase I; DNA polymerase I, protein-DNA co 99.7
1x9m_A 698 DNA polymerase; DNA ploymerase, N-2-acetylaminoflu 99.55
4dfk_A 540 DNA polymerase I, thermostable; DNA polymerase, tr 99.08
3v9w_A235 Ribonuclease T; DEDD nucleases family, EXO-nucleas 98.14
1bgx_T 832 TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhi 98.05
1wlj_A189 Interferon stimulated gene 20KDA; exoribonuclease, 97.65
2p1j_A186 POLIII, DNA polymerase III POLC-type; structural g 97.59
3mxm_B242 Three prime repair exonuclease 1; RNAse H-like fol 97.23
2gui_A194 DNA polymerase III epsilon subunit; DNA polymerase 97.18
1w0h_A204 3'-5' exonuclease ERI1; nuclease domain, hydrolase 97.1
2f96_A224 Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolas 96.75
1zbh_A299 3'-5' exonuclease ERI1; histone mRNA 3'-END-specif 96.65
1qht_A 775 Protein (DNA polymerase); archaea, hyperthermostab 96.16
1zbu_A349 ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; 95.89
1y97_A238 Three prime repair exonuclease 2; TREX2, hydrolase 95.78
2qxf_A 482 Exodeoxyribonuclease I; alpha-beta domain, DNAQ su 95.66
3u3y_B314 Three prime repair exonuclease 1; RNAse H fold, 3' 94.68
1noy_A388 Protein (DNA polymerase (E.C.2.7.7.7)); exonucleas 94.12
2gv9_A 1193 DNA polymerase; polymerase alpha fold, transferase 93.62
2xri_A224 ERI1 exoribonuclease 3; hydrolase, metal binding; 93.39
3iay_A 919 DNA polymerase delta catalytic subunit; protein-DN 93.03
1s5j_A 847 DNA polymerase I; replication, disulfide bonds, tr 91.86
3ikm_A 1172 DNA polymerase subunit gamma-1; human mitochondria 90.68
3qex_A 903 DNA polymerase, GP43; difluorotoluene nucleoside; 89.83
2a1r_A430 Poly(A)-specific ribonuclease PARN; DEDD, nuclease 88.28
2py5_A 575 DNA polymerase; protein-DNA complex, replication, 88.01
3k59_A 786 POL II, DNA polymerase II; protein-DNA complex, DN 85.16
3cg7_A308 CRN-4, cell death-related nuclease 4; hydrolase, a 82.85
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A Back     alignment and structure
Probab=100.00  E-value=2.4e-42  Score=273.85  Aligned_cols=183  Identities=21%  Similarity=0.225  Sum_probs=148.9

Q ss_pred             EcCeEEEEE--EcCCHHHHHHHHHHHHhhc-cCCCeEEEEeeeecCCCC----CCCC--CceeEEEeeeCCeEEEEEccc
Q 037014            9 FCGKIIETT--VTSTTSVAENWLLKIRSLH-SAQILIVGLNCKWKPHPI----PSLS--GKIATLQLCVDTKCLILQLLY   79 (198)
Q Consensus         9 f~~~~i~~~--v~~~~~~~~~~i~~~~~~~-~~~~~~vg~D~Ew~~~~~----~~~~--~~~~liQla~~~~~~i~~l~~   79 (198)
                      .+|+.+.+.  .+.+.+++..++..+.+.. .....+||||+||.|.+.    ++..  +++|+||||++++|+|||+. 
T Consensus        12 ~~g~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~vvg~DtEw~p~~~~~~~~~~~~~~~~~LiQla~~~~~~l~~l~-   90 (206)
T 1vk0_A           12 TDGSYVQTKTIDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRNLCLFLRLP-   90 (206)
T ss_dssp             TTSCEEEEEEEECCSSCCCHHHHHHHHHHHHHHSTTEEEEEEEEECCC------CGGGGCEEEEEEEECSSEEEEEECC-
T ss_pred             cCCccceeeEEEEecHHHHHHHHHHHHHhhhhcCCCEEEEEeeccCCCcccccccCCCCCceEEEEEecCCCeEEEecc-
Confidence            355554332  3335555666666553210 012479999999998751    1223  59999999999999999993 


Q ss_pred             cCcccHH---HHHhhcCCCeEEEEEeecchHHHHhhhcCCccCceeehHHHHHHhCCCCCCCCchHHHHHHHHcCCcCCC
Q 037014           80 MDCIPLS---IKNFLSDPNVVFVGIEVEEIMSKLKNEYGLCIKKKIDVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPWK  156 (198)
Q Consensus        80 ~~~~~~~---L~~lL~d~~i~kvG~~~~~D~~~L~~~~gi~~~~~~Dl~~l~~~~l~~~~~~~~~L~~l~~~~l~~~l~K  156 (198)
                       +.+|+.   |++||+||+|+||||++++|+++|++.||+.+++++|++.++...+|.+...+.||++|++++||.++ |
T Consensus        91 -~~~~~~L~~L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~l-K  168 (206)
T 1vk0_A           91 -KPFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDL-G  168 (206)
T ss_dssp             -SSCCGGGHHHHHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCC-H
T ss_pred             -ccCCccHHHHHHHhcCCCceEEEeccHHHHHHHHHhcCCCcCCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhCCcC-C
Confidence             567766   88999999999999999999999999999999999999988877778654458999999999999999 8


Q ss_pred             CCceeccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhcc
Q 037014          157 PKKVCMNNLESGFLDTELIKFACIDAYVSCAIGTKLLLE  195 (198)
Q Consensus       157 ~~~~~~s~W~~~~L~~~Qi~YAA~Da~~~~~l~~~L~~~  195 (198)
                      ++++++|||++ |||++|+.|||.|||+++.||.+|.+|
T Consensus       169 ~k~~~~SdW~~-pLs~~Qi~YAA~Da~~l~~l~~~L~~~  206 (206)
T 1vk0_A          169 QLDSIEAKWEK-AGPEEQLEAAAIEGWLIVNVWDQLSDE  206 (206)
T ss_dssp             HHHHHHHTGGG-SCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCcccCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            77899999999 999999999999999999999999865
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A* Back     alignment and structure
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A Back     alignment and structure
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A* Back     alignment and structure
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5 Back     alignment and structure
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Back     alignment and structure
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A* Back     alignment and structure
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ... Back     alignment and structure
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A* Back     alignment and structure
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ... Back     alignment and structure
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A Back     alignment and structure
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A* Back     alignment and structure
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5 Back     alignment and structure
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8} Back     alignment and structure
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A Back     alignment and structure
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A* Back     alignment and structure
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5 Back     alignment and structure
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5 Back     alignment and structure
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens} Back     alignment and structure
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A Back     alignment and structure
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens} Back     alignment and structure
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5 Back     alignment and structure
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A* Back     alignment and structure
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B* Back     alignment and structure
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A* Back     alignment and structure
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B* Back     alignment and structure
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens} Back     alignment and structure
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1 Back     alignment and structure
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens} Back     alignment and structure
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ... Back     alignment and structure
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A Back     alignment and structure
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A* Back     alignment and structure
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A* Back     alignment and structure
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 198
d1vk0a_206 c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thal 1e-25
>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Hypothetical protein AT5G06450
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 96.2 bits (239), Expect = 1e-25
 Identities = 38/192 (19%), Positives = 73/192 (38%), Gaps = 12/192 (6%)

Query: 11  GKIIETTVTSTTSVAE--NWLLKIRSLH-SAQILIVGLNCKWKPHPIP------SLSGKI 61
           G  ++T      S  +   +L  IR          V  +  W            +    +
Sbjct: 14  GSYVQTKTIDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSL 73

Query: 62  ATLQLCVDTKCLILQLLYMDCIPLS-IKNFLSDPNVVFVGIEVEEIMSKLKNEYGLCIKK 120
           ++++L     CL L+L       L  +  F +   V FVG+++EE +  L+  +GL I+ 
Sbjct: 74  SSVKLSTRNLCLFLRLPKPFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRN 133

Query: 121 KIDVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPWKPKKVCMNNLESGFLDTELIKFACI 180
            I+V  LA        L   G + LA+++L     +   +            E ++ A I
Sbjct: 134 AINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAK--WEKAGPEEQLEAAAI 191

Query: 181 DAYVSCAIGTKL 192
           + ++   +  +L
Sbjct: 192 EGWLIVNVWDQL 203

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query198
d1vk0a_206 Hypothetical protein AT5G06450 {Thale-cress (Arabi 100.0
d1yt3a3193 Ribonuclease D, catalytic domain {Escherichia coli 100.0
d2hbka2292 Exosome complex exonuclease RRP6 {Baker's yeast (S 100.0
d1kfsa1195 Exonuclease domain of prokaryotic DNA polymerase { 99.91
d2hhva1171 Exonuclease domain of prokaryotic DNA polymerase { 99.83
d1wlja_173 Interferon-stimulated gene 20 kDa protein, ISG20 { 98.13
d1x9ma1204 Exonuclease domain of T7 DNA polymerase {Bacteriop 97.77
d1tgoa1347 Exonuclease domain of family B DNA polymerases {Ar 97.29
d3b6oa1226 Three prime repair exonuclease 1, TREX1 {Mouse (Mu 96.5
d2guia1174 N-terminal exonuclease domain of the epsilon subun 96.16
d1s5ja1410 Exonuclease domain of family B DNA polymerases {Su 96.09
d1w0ha_200 Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 960 96.07
d1y97a1228 Three prime repair exonuclease 2, TREX2 {Human (Ho 93.87
d1ih7a1375 Exonuclease domain of family B DNA polymerases {Ba 93.74
d1q8ia1388 Exonuclease domain of family B DNA polymerases {Es 92.87
d2d5ra1252 CCR4-NOT transcription complex subunit 7, CAF1 {Hu 90.9
d2qxfa1 467 Exonuclease I {Escherichia coli K12 (Escherichia c 87.25
d1noya_372 Exonuclease domain of family B DNA polymerases {Ba 80.46
>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Hypothetical protein AT5G06450
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=8.3e-42  Score=269.13  Aligned_cols=187  Identities=20%  Similarity=0.184  Sum_probs=158.0

Q ss_pred             EEEcCeEEEEE--EcCCHHHHHHHHHHHHhhcc-CCCeEEEEeeeecCCCCCC------CCCceeEEEeeeCCeEEEEEc
Q 037014            7 ISFCGKIIETT--VTSTTSVAENWLLKIRSLHS-AQILIVGLNCKWKPHPIPS------LSGKIATLQLCVDTKCLILQL   77 (198)
Q Consensus         7 v~f~~~~i~~~--v~~~~~~~~~~i~~~~~~~~-~~~~~vg~D~Ew~~~~~~~------~~~~~~liQla~~~~~~i~~l   77 (198)
                      ..++|..+.+.  .+++.+++..|+..++.... ++..+||||+||.+.+..+      ...++|+||||+++.|||||+
T Consensus        10 ~~~d~~~~~t~~i~~~~~~~~~~~~~~i~~~~~~~~~~~v~~D~Ew~~~~~~~~~~~~~~~~~vallQl~t~~~~~l~~l   89 (206)
T d1vk0a_          10 KMTDGSYVQTKTIDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRNLCLFLRL   89 (206)
T ss_dssp             ECTTSCEEEEEEEECCSSCCCHHHHHHHHHHHHHHSTTEEEEEEEEECCC------CGGGGCEEEEEEEECSSEEEEEEC
T ss_pred             cccCcchhceeeEecCCHHHHHHHHHHHHHHHhhcCCCEEEEEeecCCCCCcccccccccCceeEEEEEEeCCCEEEEEC
Confidence            34567777664  36677888899988876421 2347999999999876432      235799999999999999999


Q ss_pred             cccC-cccHHHHHhhcCCCeEEEEEeecchHHHHhhhcCCccCceeehHHHHHHhCCCCCCCCchHHHHHHHHcCCcCCC
Q 037014           78 LYMD-CIPLSIKNFLSDPNVVFVGIEVEEIMSKLKNEYGLCIKKKIDVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPWK  156 (198)
Q Consensus        78 ~~~~-~~~~~L~~lL~d~~i~kvG~~~~~D~~~L~~~~gi~~~~~~Dl~~l~~~~l~~~~~~~~~L~~l~~~~l~~~l~K  156 (198)
                      .+.. ..|+.|++||+||+|+||||++++|+++|++.||+.++|++|+++++.+.++.+...++||+.|++++||..+.|
T Consensus        90 ~~~~~~~~~~L~~~L~~~~i~kVG~~i~~D~~~L~~~~gi~~~~~~Dl~~la~~~~~~~~~~~~gL~~L~~~~Lg~~l~K  169 (206)
T d1vk0a_          90 PKPFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQ  169 (206)
T ss_dssp             CSSCCGGGHHHHHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCCHH
T ss_pred             CccccccHHHHHHHhcCCCceEEEEeEHHHHHHHHHhcCCcccceEEchHHHHHhhcCCccccchHHHHHHHHhcccCCC
Confidence            8753 568899999999999999999999999999999999999999999998887765555789999999999999999


Q ss_pred             CCceeccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhcc
Q 037014          157 PKKVCMNNLESGFLDTELIKFACIDAYVSCAIGTKLLLE  195 (198)
Q Consensus       157 ~~~~~~s~W~~~~L~~~Qi~YAA~Da~~~~~l~~~L~~~  195 (198)
                      ++ .++|||+ +||+++||+|||.|||++++||++|.+|
T Consensus       170 ~~-~~~SnW~-~pLs~~Qi~YAA~DA~~~~~i~~~L~~e  206 (206)
T d1vk0a_         170 LD-SIEAKWE-KAGPEEQLEAAAIEGWLIVNVWDQLSDE  206 (206)
T ss_dssp             HH-HHHHTGG-GSCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cc-eeecCCC-CcCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            74 5579997 6999999999999999999999999864
>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]} Back     information, alignment and structure
>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x9ma1 c.55.3.5 (A:1-210) Exonuclease domain of T7 DNA polymerase {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]} Back     information, alignment and structure
>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ih7a1 c.55.3.5 (A:1-375) Exonuclease domain of family B DNA polymerases {Bacteriophage RB69 [TaxId: 12353]} Back     information, alignment and structure
>d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2d5ra1 c.55.3.9 (A:11-262) CCR4-NOT transcription complex subunit 7, CAF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]} Back     information, alignment and structure
>d1noya_ c.55.3.5 (A:) Exonuclease domain of family B DNA polymerases {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure