Citrus Sinensis ID: 037028

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500---
MAPDFQWRHGLCLDDKDNEAMGLDLNYSATACYRCFNLSTLANHSCTWSTSDETRNHKRIKKTSMIDESSGSSSRLCNSLNSLPRLQFRDHVWVYTQRYLAIEAMEEAALAMMIDKDTEVKEEGNGDGMKLVQQLIACAEAVACRDKAHASALLSELRVNALVFGTSFQRVASCFVQGLSDRLALVQPLGAVGVVGSAAKSMAITSERDESLSLVYEICPQIQFGHFVANASILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFLAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRLHQLSPKVVMLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQSVPIKMLMQAKQWLRKVQTCEGYTIIEEKGCLVLGWKSKPIIAASCWKCS
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccHHHHHHHHHcccccccccEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEEEccccccccccccccccccEEEEEEccccccccccccccHHHHHHHHHHccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccEEEEEccEEEEEEcccEEEEEEEcccc
ccccHEEHccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccEEEEEccccHHHcccHHHHccccccccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccHccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEccHHHcHccccHHHcccccccEEEEEHHHHHHHcccccccHHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHEcccHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccEEEEEcccEEEEcccccEEEEEEccccc
mapdfqwrhglclddkdneamgldlnysatacyrcfnlstlanhsctwstsdetrnhkrikktsmidessgsssrlcnslnslprlqfrdHVWVYTQRYLAIEAMEEAALAMMIDKdtevkeegngdGMKLVQQLIACAEAVACRDKAHASALLSELRVNALVFGTSFQRVASCFVQGLSDRLALVQPLGAVGVVGSAAKSMAITSERDESLSLVYEicpqiqfghfvaNASILEAFEGESLVHVVDLgmtlglphgrqWHSLMQSLVNrsgkvpkrlkitgvgncseRLGEIGDELKRYADGLKLNFEFLAVEKSLETLQakdinvedgEVLVMNSILELHCVVKESRGALNSVLQRLHQLSPKVVMLVEqdsshngpfFLGRFMEALHYYSAIFDSLdamlpkydtkRAKIEQFYFAEEIKNIVscegparverHERVDQWRRRmsragfqsVPIKMLMQAKQWLRKVQTCEGYtiieekgclvlgwkskpiiaascwkcs
mapdfqwrhglclddkdnEAMGLDLNYSATACYRCFNLSTLanhsctwstsdetrnhkrikktsmidessgsssrLCNSLNslprlqfrdHVWVYTQRYLAIEAMEEAALAMMIDKDTEVKEEGNGDGMKLVQQLIACAEAVACRDKAHASALLSELRVNALVFGTSFQRVASCFVQGLSDRLALVQPLGAVGVVGSAAKSMAITSERDESLSLVYEICPQIQFGHFVANASILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNrsgkvpkrlkitgvgncserlGEIGDELKRYADGLKLNFEFLAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRLHQLSPKVVMLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTKRAKIEQFYFAEEIKnivscegparverHERVDQWRRrmsragfqsvpiKMLMQAKQWLRKVQTCEGYTIIEEkgclvlgwkskpiiaascwkcs
MAPDFQWRHGLCLDDKDNEAMGLDLNYSATACYRCFNLSTLANHSCTWSTSDETRNHKRIKKTSMIDEssgsssrlcnslnslprlQFRDHVWVYTQRYlaieameeaalammiDKDTEVKEEGNGDGMKLVQQLIACAEAVACRDKAHASALLSELRVNALVFGTSFQRVASCFVQGLSDRLALVQPLGAVGVVGSAAKSMAITSERDESLSLVYEICPQIQFGHFVANASILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFLAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRLHQLSPKVVMLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQSVPIKMLMQAKQWLRKVQTCEGYTIIEEKGCLVLGWKSKPIIAASCWKCS
****FQWRHGLCLDDKDNEAMGLDLNYSATACYRCFNLSTLANHSCTWS******************************LNSLPRLQFRDHVWVYTQRYLAIEAMEEAALAMMIDKD*********DGMKLVQQLIACAEAVACRDKAHASALLSELRVNALVFGTSFQRVASCFVQGLSDRLALVQPLGAVGVVGSAAKSMAITSERDESLSLVYEICPQIQFGHFVANASILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFLAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRLHQLSPKVVMLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQSVPIKMLMQAKQWLRKVQTCEGYTIIEEKGCLVLGWKSKPIIAASCWK**
*APDFQ**H***************************************************************************************************************************QQLIACAEAVACRDKAHASALLSELRVNA******FQRVASCFVQGLSDRLALVQPLG***************SERDESLSLVYEICPQIQFGHFVANASILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVN**G*VPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFLAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRLHQLSPKVVMLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQSVPIKMLMQAKQWLRKVQTCEGYTIIEEKGCLVLGWKSKPIIAASCWKCS
MAPDFQWRHGLCLDDKDNEAMGLDLNYSATACYRCFNLSTLANHSC**********HKRIKK**************CNSLNSLPRLQFRDHVWVYTQRYLAIEAMEEAALAMMIDKDTEVKEEGNGDGMKLVQQLIACAEAVACRDKAHASALLSELRVNALVFGTSFQRVASCFVQGLSDRLALVQPLGAVGVVGSAAKSMAITSERDESLSLVYEICPQIQFGHFVANASILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFLAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRLHQLSPKVVMLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQSVPIKMLMQAKQWLRKVQTCEGYTIIEEKGCLVLGWKSKPIIAASCWKCS
MAPDFQWRHGLCLDDKDNEAMGLDLNYSATACYRCFNLSTLANHSCTW*****************************NSLNSLPRLQFRDHVWVYTQRYLAIEAM*********************DGMKLVQQLIACAEAVACRDKAHASALLSELRVNALVFGTSFQRVASCFVQGLSDRLALVQPLGAVGVVGSAAKSMAITSERDESLSLVYEICPQIQFGHFVANASILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFLAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRLHQLSPKVVMLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQSVPIKMLMQAKQWLRKVQTCEGYTIIEEKGCLVLGWKSKPIIAASCWKCS
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAPDFQWRHGLCLDDKDNEAMGLDLNYSATACYRCFNLSTLANHSCTWSTSDETRNHKRIKKTSMIDESSGSSSRLCNSLNSLPRLQFRDHVWVYTQRYLAIEAMEEAALAMMIDKDTEVKEEGNGDGMKLVQQLIACAEAVACRDKAHASALLSELRVNALVFGTSFQRVASCFVQGLSDRLALVQPLGAVGVVGSAAKSMAITSERDESLSLVYEICPQIQFGHFVANASILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFLAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRLHQLSPKVVMLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQSVPIKMLMQAKQWLRKVQTCEGYTIIEEKGCLVLGWKSKPIIAASCWKCS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query503 2.2.26 [Sep-21-2011]
Q8S4W7590 DELLA protein GAI1 OS=Vit no no 0.711 0.606 0.374 1e-68
Q5BN22579 DELLA protein RGA2 OS=Bra N/A no 0.709 0.616 0.369 2e-66
Q9LQT8533 DELLA protein GAI OS=Arab yes no 0.711 0.671 0.370 2e-65
Q5BN23573 DELLA protein RGA1 OS=Bra N/A no 0.709 0.623 0.361 2e-64
Q9SLH3587 DELLA protein RGA OS=Arab no no 0.709 0.608 0.361 6e-64
Q9LF53523 DELLA protein RGL3 OS=Ara no no 0.699 0.673 0.372 4e-63
Q9C8Y3511 DELLA protein RGL1 OS=Ara no no 0.707 0.696 0.355 1e-62
Q7Y1B6588 DELLA protein GAI OS=Sola N/A no 0.709 0.607 0.363 3e-61
Q7G7J6625 DELLA protein SLR1 OS=Ory yes no 0.715 0.576 0.350 4e-61
Q84TQ7537 DELLA protein GAI OS=Goss N/A no 0.699 0.655 0.362 7e-61
>sp|Q8S4W7|GAI1_VITVI DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1 Back     alignment and function desciption
 Score =  261 bits (667), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 144/385 (37%), Positives = 220/385 (57%), Gaps = 27/385 (7%)

Query: 128 GMKLVQQLIACAEAVACRDKAHASALLSELRVNALVFGTSFQRVASCFVQGLSDRLALVQ 187
           G++LV  L+ACAEAV   +   A AL+ ++   A+    + ++VA+ F +GL+ R+  + 
Sbjct: 211 GIRLVHTLMACAEAVQQENLKLAEALVKQIGFLAVSQAGAMRKVATYFAEGLARRIYRLY 270

Query: 188 PLGAVGVVGSAAKSMAITSERDESLSL-VYEICPQIQFGHFVANASILEAFEGESLVHVV 246
           P               + S   + L +  YE CP ++F HF AN +ILEAFEG+  VHV+
Sbjct: 271 P------------DKPLDSSFSDILQMHFYETCPYLKFAHFTANQAILEAFEGKKRVHVI 318

Query: 247 DLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCS----ERLGEIGDELKRYAD 302
           D  M  G+    QW +LMQ+L  R G  P   ++TG+G  S    + L E+G +L + A+
Sbjct: 319 DFSMKQGM----QWPALMQALALRPGG-PPSFRLTGIGPPSTDNTDHLHEVGWKLAQLAE 373

Query: 303 GLKLNFEFLA-VEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRLHQ 361
            + + FE+   V  SL  L A  + + DGE + +NS+ ELH ++    G +  VL  +  
Sbjct: 374 TIHVEFEYRGFVANSLADLDASMLELRDGESVAVNSVFELHSLLARP-GGIERVLSAVKD 432

Query: 362 LSPKVVMLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAM-LPKYDTKRAKIEQFYFAE 420
           + P +V +VEQ+++HNGP FL RF E+LHYYS +FDSL+   +   +T+   + + Y  +
Sbjct: 433 MKPDIVTIVEQEANHNGPVFLDRFTESLHYYSTLFDSLEGCGVSPVNTQDKLMSEVYLGQ 492

Query: 421 EIKNIVSCEGPARVERHERVDQWRRRMSRAGFQSVPI--KMLMQAKQWLRKVQTCEGYTI 478
           +I N+V+CEGP RVERHE + QWR R+  AGF  V +      QA   L      +GY +
Sbjct: 493 QICNVVACEGPERVERHETLAQWRARLGSAGFDPVNLGSNAFKQASMLLALFAGGDGYRV 552

Query: 479 IEEKGCLVLGWKSKPIIAASCWKCS 503
            E  GCL+LGW ++P+IA S W+ +
Sbjct: 553 EENNGCLMLGWHTRPLIATSAWQLA 577
Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Vitis vinifera (taxid: 29760)
>sp|Q5BN22|RGA2_BRACM DELLA protein RGA2 OS=Brassica campestris GN=RGA2 PE=3 SV=1 Back     alignment and function description
>sp|Q9LQT8|GAI_ARATH DELLA protein GAI OS=Arabidopsis thaliana GN=GAI PE=1 SV=1 Back     alignment and function description
>sp|Q5BN23|RGA1_BRACM DELLA protein RGA1 OS=Brassica campestris GN=RGA1 PE=1 SV=1 Back     alignment and function description
>sp|Q9SLH3|RGA_ARATH DELLA protein RGA OS=Arabidopsis thaliana GN=RGA PE=1 SV=1 Back     alignment and function description
>sp|Q9LF53|RGL3_ARATH DELLA protein RGL3 OS=Arabidopsis thaliana GN=RGL3 PE=1 SV=1 Back     alignment and function description
>sp|Q9C8Y3|RGL1_ARATH DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1 PE=1 SV=1 Back     alignment and function description
>sp|Q7Y1B6|GAI_SOLLC DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1 Back     alignment and function description
>sp|Q7G7J6|SLR1_ORYSJ DELLA protein SLR1 OS=Oryza sativa subsp. japonica GN=SLR1 PE=1 SV=1 Back     alignment and function description
>sp|Q84TQ7|GAI_GOSHI DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query503
224136051523 GRAS family transcription factor [Populu 0.970 0.933 0.690 0.0
225457448519 PREDICTED: DELLA protein GAI1 [Vitis vin 0.978 0.947 0.685 0.0
255547906507 DELLA protein GAI1, putative [Ricinus co 0.952 0.944 0.701 0.0
255540361526 DELLA protein RGL1, putative [Ricinus co 0.978 0.935 0.680 0.0
262283773509 GRAS family transcription factor [Citrus 0.994 0.982 0.673 0.0
225425918530 PREDICTED: DELLA protein GAI1 [Vitis vin 0.926 0.879 0.692 0.0
224121910516 GRAS family transcription factor [Populu 0.972 0.947 0.683 0.0
297733612491 unnamed protein product [Vitis vinifera] 0.922 0.945 0.650 1e-180
356565266514 PREDICTED: DELLA protein RGL1-like [Glyc 0.888 0.869 0.657 1e-170
356513939511 PREDICTED: DELLA protein GAI1-like [Glyc 0.882 0.868 0.655 1e-169
>gi|224136051|ref|XP_002322227.1| GRAS family transcription factor [Populus trichocarpa] gi|222869223|gb|EEF06354.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/507 (69%), Positives = 410/507 (80%), Gaps = 19/507 (3%)

Query: 14  DDKDNEAMGLDLNYSATACY-RCFNLSTLANHSCTW--STSDETRNHKRIKKTSMIDES- 69
           D+  +E  GLDL+ SA ACY R   L T  +++ +W    SD+TR+ KR++++S + ES 
Sbjct: 12  DENVSETSGLDLSLSAMACYPRPPYLPTFDSNAVSWILPFSDDTRDAKRMRRSSSLVESI 71

Query: 70  --------SGSSSRLC-----NSLNSLPRLQFRDHVWVYTQRYLAIEAMEEAALAMMIDK 116
                   SG SS +C     N LNS+P+L FRDH+W YTQRYLA EA+EEAA   MI+ 
Sbjct: 72  RSNNSSLYSGGSS-ICRSISTNILNSIPKLHFRDHIWTYTQRYLAAEAVEEAASEAMINA 130

Query: 117 DTE-VKEEGNGDGMKLVQQLIACAEAVACRDKAHASALLSELRVNALVFGTSFQRVASCF 175
           D    +EEGN DGM+LVQ LIACAEAVACRDK+HASALLSELR NALVFG+SFQRVASCF
Sbjct: 131 DEGGNEEEGNADGMRLVQLLIACAEAVACRDKSHASALLSELRSNALVFGSSFQRVASCF 190

Query: 176 VQGLSDRLALVQPLGAVGVVGSAAKSMAITSERDESLSLVYEICPQIQFGHFVANASILE 235
           VQGL+DRL+LVQPLGAVG V +       + +++E+L LVYEICP I+FGHFVAN +ILE
Sbjct: 191 VQGLTDRLSLVQPLGAVGFVPTMNIMDIASDKKEEALRLVYEICPHIRFGHFVANNAILE 250

Query: 236 AFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGD 295
           AFEGES VHVVDLGMTLGL HG QW  L++SL  R+GK P RL+ITGVG C +R   IGD
Sbjct: 251 AFEGESFVHVVDLGMTLGLSHGHQWRRLIESLAERAGKAPSRLRITGVGLCVDRFRIIGD 310

Query: 296 ELKRYADGLKLNFEFLAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSV 355
           ELK YA  + +N EF AVE +LE L+ +DI + +GEVLV+NSIL+LHCVVKESRGALNSV
Sbjct: 311 ELKEYAKDMGINLEFSAVESNLENLRPEDIKINEGEVLVVNSILQLHCVVKESRGALNSV 370

Query: 356 LQRLHQLSPKVVMLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTKRAKIEQ 415
           LQ +H+LSPKV++LVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDT+RAK+EQ
Sbjct: 371 LQIVHELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKMEQ 430

Query: 416 FYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQSVPIKMLMQAKQWLRKVQTCEG 475
           FYFAEEIKNIVSCEGPARVERHERV QWRRRMSRAGFQ+ PIKM+ QAKQWL K + C+G
Sbjct: 431 FYFAEEIKNIVSCEGPARVERHERVYQWRRRMSRAGFQAAPIKMMAQAKQWLVKNKVCDG 490

Query: 476 YTIIEEKGCLVLGWKSKPIIAASCWKC 502
           YT++EEKGCLVLGWKSKPIIAASCWKC
Sbjct: 491 YTVVEEKGCLVLGWKSKPIIAASCWKC 517

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225457448|ref|XP_002263040.1| PREDICTED: DELLA protein GAI1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255547906|ref|XP_002515010.1| DELLA protein GAI1, putative [Ricinus communis] gi|223546061|gb|EEF47564.1| DELLA protein GAI1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255540361|ref|XP_002511245.1| DELLA protein RGL1, putative [Ricinus communis] gi|223550360|gb|EEF51847.1| DELLA protein RGL1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|262283773|gb|ACY40694.1| GRAS family transcription factor [Citrus trifoliata] Back     alignment and taxonomy information
>gi|225425918|ref|XP_002267538.1| PREDICTED: DELLA protein GAI1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224121910|ref|XP_002318703.1| GRAS family transcription factor [Populus trichocarpa] gi|222859376|gb|EEE96923.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297733612|emb|CBI14859.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356565266|ref|XP_003550863.1| PREDICTED: DELLA protein RGL1-like [Glycine max] Back     alignment and taxonomy information
>gi|356513939|ref|XP_003525665.1| PREDICTED: DELLA protein GAI1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query503
TAIR|locus:2006747533 GAI "GIBBERELLIC ACID INSENSIT 0.709 0.669 0.372 2.4e-60
TAIR|locus:2005516587 RGA1 "REPRESSOR OF GA1-3 1" [A 0.709 0.608 0.364 1.7e-59
TAIR|locus:2008086482 SCL3 "AT1G50420" [Arabidopsis 0.302 0.315 0.433 2e-59
TAIR|locus:2157477523 RGL3 "RGA-like protein 3" [Ara 0.701 0.674 0.385 5.7e-59
TAIR|locus:2201557511 RGL1 "RGA-like 1" [Arabidopsis 0.703 0.692 0.365 1.5e-58
TAIR|locus:2099624547 RGL2 "RGA-like 2" [Arabidopsis 0.709 0.652 0.367 7.5e-57
TAIR|locus:2044973413 SCL21 "AT2G04890" [Arabidopsis 0.721 0.878 0.368 7e-54
TAIR|locus:2080345653 SCR "SCARECROW" [Arabidopsis t 0.743 0.572 0.347 1.9e-53
TAIR|locus:2164783490 PAT1 "AT5G48150" [Arabidopsis 0.709 0.728 0.341 2.1e-52
TAIR|locus:2026982593 SCL1 "AT1G21450" [Arabidopsis 0.709 0.602 0.356 4e-51
TAIR|locus:2006747 GAI "GIBBERELLIC ACID INSENSITIVE" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 144/387 (37%), Positives = 223/387 (57%)

Query:   127 DGMKLVQQLIACAEAVACRDKAHASALLSELRVNALVFGTSFQRVASCFVQGLSDRLALV 186
             +G++LV  L+ACAEAV   +   A AL+ ++   A+    + ++VA+ F + L+ R+  +
Sbjct:   165 NGVRLVHALLACAEAVQKENLTVAEALVKQIGFLAVSQIGAMRKVATYFAEALARRIYRL 224

Query:   187 QPLGAVGVVGSAAKSMAITSERDESLSL-VYEICPQIQFGHFVANASILEAFEGESLVHV 245
              P          ++S  I     ++L +  YE CP ++F HF AN +ILEAF+G+  VHV
Sbjct:   225 SP----------SQS-PIDHSLSDTLQMHFYETCPYLKFAHFTANQAILEAFQGKKRVHV 273

Query:   246 VDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCS----ERLGEIGDELKRYA 301
             +D  M+ GL    QW +LMQ+L  R G  P   ++TG+G  +    + L E+G +L   A
Sbjct:   274 IDFSMSQGL----QWPALMQALALRPGGPPV-FRLTGIGPPAPDNFDYLHEVGCKLAHLA 328

Query:   302 DGLKLNFEFLA-VEKSLETLQAKDINVEDGEV--LVMNSILELHCVVKESRGALNSVLQR 358
             + + + FE+   V  +L  L A  + +   E+  + +NS+ ELH ++    GA++ VL  
Sbjct:   329 EAIHVEFEYRGFVANTLADLDASMLELRPSEIESVAVNSVFELHKLLGRP-GAIDKVLGV 387

Query:   359 LHQLSPKVVMLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTKRAKIEQFYF 418
             ++Q+ P++  +VEQ+S+HN P FL RF E+LHYYS +FDSL+ + P    K   + + Y 
Sbjct:   388 VNQIKPEIFTVVEQESNHNSPIFLDRFTESLHYYSTLFDSLEGV-PSGQDK--VMSEVYL 444

Query:   419 AEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQSVPI--KMLMQAKQWLRKVQTCEGY 476
              ++I N+V+C+GP RVERHE + QWR R   AGF +  I      QA   L      EGY
Sbjct:   445 GKQICNVVACDGPDRVERHETLSQWRNRFGSAGFAAAHIGSNAFKQASMLLALFNGGEGY 504

Query:   477 TIIEEKGCLVLGWKSKPIIAASCWKCS 503
              + E  GCL+LGW ++P+IA S WK S
Sbjct:   505 RVEESDGCLMLGWHTRPLIATSAWKLS 531
GO:0005634 "nucleus" evidence=ISM;ISS;IDA;TAS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS
GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA;TAS
GO:0009938 "negative regulation of gibberellic acid mediated signaling pathway" evidence=IMP;TAS
GO:0005515 "protein binding" evidence=IPI
GO:0010233 "phloem transport" evidence=IMP
GO:0009651 "response to salt stress" evidence=IGI
GO:0009723 "response to ethylene stimulus" evidence=IGI;RCA
GO:0009737 "response to abscisic acid stimulus" evidence=IGI;RCA
GO:0042538 "hyperosmotic salinity response" evidence=IGI;RCA
GO:0010029 "regulation of seed germination" evidence=IGI
GO:2000033 "regulation of seed dormancy process" evidence=IGI
GO:0009739 "response to gibberellin stimulus" evidence=IEP
GO:0010187 "negative regulation of seed germination" evidence=IGI
GO:0010218 "response to far red light" evidence=IEP
GO:2000377 "regulation of reactive oxygen species metabolic process" evidence=IGI
GO:0009863 "salicylic acid mediated signaling pathway" evidence=IGI;RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IGI;RCA
GO:0009845 "seed germination" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010325 "raffinose family oligosaccharide biosynthetic process" evidence=RCA
GO:0048444 "floral organ morphogenesis" evidence=RCA
GO:0006808 "regulation of nitrogen utilization" evidence=IMP
TAIR|locus:2005516 RGA1 "REPRESSOR OF GA1-3 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008086 SCL3 "AT1G50420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157477 RGL3 "RGA-like protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201557 RGL1 "RGA-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099624 RGL2 "RGA-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044973 SCL21 "AT2G04890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080345 SCR "SCARECROW" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164783 PAT1 "AT5G48150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026982 SCL1 "AT1G21450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query503
pfam03514372 pfam03514, GRAS, GRAS family transcription factor 1e-128
>gnl|CDD|217595 pfam03514, GRAS, GRAS family transcription factor Back     alignment and domain information 
 Score =  378 bits (973), Expect = e-128
 Identities = 166/379 (43%), Positives = 230/379 (60%), Gaps = 15/379 (3%)

Query: 131 LVQQLIACAEAVACRDKAHASALLSELRVNALVFGTSFQRVASCFVQGLSDRLALVQPLG 190
           LV  L+ACAEAV+  D + A A+L+ L   A   G   QR+A+ F + L+ RLA      
Sbjct: 1   LVHLLLACAEAVSSGDLSLAQAILARLNQLASPAGDPMQRLAAYFTEALAARLARSGSSI 60

Query: 191 AVGVVGSAAKSMAITSERDESLSLVYEICPQIQFGHFVANASILEAFEGESLVHVVDLGM 250
              +  S +     + E   +  L YE+ P ++FGHF AN +ILEAFEGE  VH++D  +
Sbjct: 61  YSALPPSPSTPSD-SVEVLAAYKLFYEVSPYLKFGHFTANQAILEAFEGEERVHIIDFDI 119

Query: 251 TLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGN----CSERLGEIGDELKRYADGLKL 306
             GL    QW SL+Q+L +R G  P  L+ITG+G+     +E L E GD L ++AD L +
Sbjct: 120 GQGL----QWPSLIQALASRPGGPP-HLRITGIGSPQFSSAEELEETGDRLAQFADSLGV 174

Query: 307 NFEF-LAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNS-VLQRLHQLSP 364
            FEF   V K LE L  + ++V  GE L +N +  LH ++ ES    +   L+ +  L+P
Sbjct: 175 PFEFNPLVAKRLEDLDLEMLDVRPGEALAVNCVFALHRLLDESVSLESPTFLRLVKSLNP 234

Query: 365 KVVMLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTKRAKIEQFYFAEEIKN 424
           KVV LVEQ+++HN   FL RF+EALHYYSA+FDSL+A LP+   +R K+E+     EI N
Sbjct: 235 KVVTLVEQEANHNSAPFLARFVEALHYYSALFDSLEATLPRDSEERRKVERELLGREIVN 294

Query: 425 IVSCEGPARVERHERVDQWRRRMSRAGFQSVPI--KMLMQAKQWLRKVQTCEGYTIIEEK 482
           +V+CEG  RVERHE   +WR RM RAGF+ VP+    + QAK  LR     +GY + E+ 
Sbjct: 295 VVACEGAERVERHETFGKWRERMRRAGFRPVPLSEFAVKQAKLLLRLYYV-DGYRVEEDN 353

Query: 483 GCLVLGWKSKPIIAASCWK 501
           G LVLGWK +P++AAS W+
Sbjct: 354 GSLVLGWKGRPLVAASAWR 372

Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction. Length = 372

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 503
PF03514374 GRAS: GRAS domain family; InterPro: IPR005202 Sequ 100.0
PRK15451247 tRNA cmo(5)U34 methyltransferase; Provisional 97.1
TIGR00740239 methyltransferase, putative. A simple BLAST search 96.27
TIGR02752231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 95.32
PF01209233 Ubie_methyltran: ubiE/COQ5 methyltransferase famil 93.78
TIGR02716306 C20_methyl_CrtF C-20 methyltransferase BchU. Membe 93.34
PF12847112 Methyltransf_18: Methyltransferase domain; PDB: 3G 92.98
PLN02233261 ubiquinone biosynthesis methyltransferase 92.08
COG2226238 UbiE Methylase involved in ubiquinone/menaquinone 91.2
PF13489161 Methyltransf_23: Methyltransferase domain; PDB: 3J 90.38
PF13847152 Methyltransf_31: Methyltransferase domain; PDB: 3T 89.98
PRK06202232 hypothetical protein; Provisional 89.62
TIGR01934223 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis 86.93
TIGR00477195 tehB tellurite resistance protein TehB. Part of a 86.14
PF13649101 Methyltransf_25: Methyltransferase domain; PDB: 3B 85.72
PLN02336475 phosphoethanolamine N-methyltransferase 85.48
PRK08317241 hypothetical protein; Provisional 85.02
PTZ00098263 phosphoethanolamine N-methyltransferase; Provision 83.8
TIGR03438301 probable methyltransferase. This model represents 83.74
PLN02396322 hexaprenyldihydroxybenzoate methyltransferase 83.62
COG2230283 Cfa Cyclopropane fatty acid synthase and related m 82.91
PRK14103255 trans-aconitate 2-methyltransferase; Provisional 82.16
PLN02336 475 phosphoethanolamine N-methyltransferase 81.92
PLN02585315 magnesium protoporphyrin IX methyltransferase 80.43
PF02353273 CMAS: Mycolic acid cyclopropane synthetase; InterP 80.15
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-109  Score=867.19  Aligned_cols=364  Identities=48%  Similarity=0.806  Sum_probs=335.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHHHhhhhhccCCCCcccccccchhhhchhhHHH
Q 037028          131 LVQQLIACAEAVACRDKAHASALLSELRVNALVFGTSFQRVASCFVQGLSDRLALVQPLGAVGVVGSAAKSMAITSERDE  210 (503)
Q Consensus       131 L~~LLl~CAeAV~~gd~~~A~~lL~~L~~~as~~Gd~~qRlA~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (503)
                      |+|||++||+||+.||.+.|+.+|++|++++||+|||+||||+||++||.+||.+.++..... .++.........+...
T Consensus         1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~-~~~~~~~~~~~~~~~~   79 (374)
T PF03514_consen    1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSA-LPPSSPSPSESSEQLA   79 (374)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccC-CCCccccccchHHHHH
Confidence            689999999999999999999999999999999999999999999999999999865421111 1111100001234578


Q ss_pred             HHHHHHHhccchhhhhHhhhHHHHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecC----C
Q 037028          211 SLSLVYEICPQIQFGHFVANASILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGN----C  286 (503)
Q Consensus       211 A~~~~~e~~P~~kfahftANqAILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~----~  286 (503)
                      ||++||+.|||+||||||||||||||++|+++||||||||+    +|+|||+|||+||.|++||| +||||||++    +
T Consensus        80 a~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~----~G~QW~~LiqaLa~R~~gpp-~LrIT~i~~~~~~~  154 (374)
T PF03514_consen   80 AYQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIG----FGVQWPSLIQALASRPGGPP-SLRITGIGPPNSGS  154 (374)
T ss_pred             HHHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCC----cchHHHHHHHHHhcCCCCCC-eEEEEeccCCCCCc
Confidence            99999999999999999999999999999999999999985    67999999999999999999 899999999    5


Q ss_pred             chhHHHHHHHHHHHHhhCCCcEEEeee-cccccccCcccccccCCcEEEEEeccccccccccccc---hHHHHHHHHHhc
Q 037028          287 SERLGEIGDELKRYADGLKLNFEFLAV-EKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRG---ALNSVLQRLHQL  362 (503)
Q Consensus       287 ~~~l~~tg~rL~~fA~~lgipFeF~~v-~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~---~~~~~L~~Ir~L  362 (503)
                      .+.+++||++|.+||+++||||||++| ..++|++++++|++++||+|||||+|+||||++++..   +++.||+.||+|
T Consensus       155 ~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L  234 (374)
T PF03514_consen  155 ADELQETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSL  234 (374)
T ss_pred             HHHHHHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhc
Confidence            789999999999999999999999995 6789999999999999999999999999999976543   578899999999


Q ss_pred             CCcEEEEEeecCCCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHhHhhhcCCCCccccccchhh
Q 037028          363 SPKVVMLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQ  442 (503)
Q Consensus       363 ~PkvvvlvE~ea~~ns~~F~~RF~eAL~yYsAlFDSLda~lp~~~~eR~~iE~~~lg~eI~NiVAcEG~~RvERhE~~~~  442 (503)
                      +|+|||++|+|+|||+|+|++||.|||+||+|+|||||+++|+++++|..+|+.+||++|+|||||||.+|+||||++++
T Consensus       235 ~P~vvv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~  314 (374)
T PF03514_consen  235 NPKVVVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQ  314 (374)
T ss_pred             CCCEEEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCceeecCC--hHHHHHHHHHhcCCCCCcEEEeeCCEEEEEeCCceEEEEEeee
Q 037028          443 WRRRMSRAGFQSVPIK--MLMQAKQWLRKVQTCEGYTIIEEKGCLVLGWKSKPIIAASCWK  501 (503)
Q Consensus       443 Wr~rm~~aGF~~~~ls--~~~qA~~lL~~~~~~~gy~v~~~~g~L~LgWk~~pL~svSaWr  501 (503)
                      |+.||.+|||+++|+|  .+.||+.+|+++. ++||+|++++|||+||||++||+++||||
T Consensus       315 W~~r~~~aGF~~~~ls~~~~~qa~~ll~~~~-~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr  374 (374)
T PF03514_consen  315 WRRRMRRAGFRPVPLSEFAVSQAKLLLRKFP-GDGYTVEEDGGCLLLGWKGRPLVAASAWR  374 (374)
T ss_pred             HHHHHHhcCCeecCCCHHHHHHHHHHHhccC-CCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence            9999999999999999  4789999998876 89999999999999999999999999997

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>TIGR00740 methyltransferase, putative Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] Back     alignment and domain information
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU Back     alignment and domain information
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A Back     alignment and domain information
>PLN02233 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C Back     alignment and domain information
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A Back     alignment and domain information
>PRK06202 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases Back     alignment and domain information
>TIGR00477 tehB tellurite resistance protein TehB Back     alignment and domain information
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>PRK08317 hypothetical protein; Provisional Back     alignment and domain information
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional Back     alignment and domain information
>TIGR03438 probable methyltransferase Back     alignment and domain information
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase Back     alignment and domain information
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14103 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>PLN02585 magnesium protoporphyrin IX methyltransferase Back     alignment and domain information
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query503
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-10
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 61.0 bits (147), Expect = 6e-10
 Identities = 88/546 (16%), Positives = 155/546 (28%), Gaps = 188/546 (34%)

Query: 12  CLDDKDNEAM------GLDLNYSATACYRCFNLSTLANHSCTWSTSDETRNHKRIKKTSM 65
            L  K  E +       L +NY                    +  S         ++ SM
Sbjct: 70  TLLSKQEEMVQKFVEEVLRINYK-------------------FLMS---PIKTEQRQPSM 107

Query: 66  IDESSGSS-SRLCNSLNSLPRLQFRDHVWVYTQRYLAIEAMEEAALAMMIDKDTEVKEEG 124
           +         RL N      +     +V     R      + +A L        E++   
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKY----NVS----RLQPYLKLRQALL--------ELRPAK 151

Query: 125 N--GDGMK------LVQQLIACAEAVACRDKAHASALLSELRVNALVFGTSFQRVASCF- 175
           N   DG+       +            C                 + F   +  + +C  
Sbjct: 152 NVLIDGVLGSGKTWVA--------LDVCLSYK---------VQCKMDFKIFWLNLKNCNS 194

Query: 176 ----VQGLSDRLALVQPLGAVGVVGSAAKSMAITSERDESLSLV----YEICPQIQFGHF 227
               ++ L   L  + P        S+   + I S + E   L+    YE C  +   + 
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-LLN- 252

Query: 228 VANASILEAFEGES--LVHVVDLGMTLGLPHGRQWH----------------SLMQSLVN 269
           V NA    AF      L+      +T  L      H                SL+   ++
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 270 -RSGKVPKR------LKITGVGNCSERLGEIGDELKRYADGLKLNFEFL--AVEKSLETL 320
            R   +P+        +++ +    E + +       +     +N + L   +E SL  L
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIA---ESIRDGLATWDNW---KHVNCDKLTTIIESSLNVL 366

Query: 321 QA--------------KDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRLHQLSPKV 366
           +                  ++    +L   S++    +  +       V+ +LH+ S   
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPT-ILL---SLIWFDVIKSDVM----VVVNKLHKYS--- 415

Query: 367 VMLVEQDSSHNGPFFLGRFME---------ALH-----YYSAI--FDSLDAMLPKYDTKR 410
             LVE+    +       ++E         ALH     +Y+    FDS D + P  D   
Sbjct: 416 --LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ-- 471

Query: 411 AKIEQFYFAEEI----KNIVSCEGPARVERHERVDQWRRRMSRAGFQSVPIKMLMQAKQW 466
                 YF   I    KNI         E  ER+  +R       F        ++ K  
Sbjct: 472 ------YFYSHIGHHLKNI---------EHPERMTLFRMVFLDFRF--------LEQK-- 506

Query: 467 LRKVQT 472
           +R   T
Sbjct: 507 IRHDST 512

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query503
4gek_A261 TRNA (CMO5U34)-methyltransferase; structural genom 97.47
3dtn_A234 Putative methyltransferase MM_2633; structural gen 96.35
3bkx_A275 SAM-dependent methyltransferase; YP_807781.1, cycl 95.06
3dp7_A363 SAM-dependent methyltransferase; structural genomi 94.71
3ujc_A266 Phosphoethanolamine N-methyltransferase; parasite; 94.41
1vl5_A260 Unknown conserved protein BH2331; putative methylt 94.37
2r3s_A335 Uncharacterized protein; methyltransferase domain, 94.18
2ip2_A334 Probable phenazine-specific methyltransferase; pyo 94.04
3dh0_A219 SAM dependent methyltransferase; cystal structure, 94.02
3htx_A950 HEN1; HEN1, small RNA methyltransferase, protein-R 94.0
1x19_A359 CRTF-related protein; methyltransferase, bacterioc 93.9
2aot_A292 HMT, histamine N-methyltransferase; classic methyl 93.8
4a6d_A353 Hydroxyindole O-methyltransferase; melatonin, circ 93.72
3mcz_A352 O-methyltransferase; adomet_mtases, S-adenosylmeth 93.34
3sm3_A235 SAM-dependent methyltransferases; NESG, structural 93.02
1xxl_A239 YCGJ protein; structural genomics, protein structu 92.94
3f4k_A257 Putative methyltransferase; structural genomics, P 92.46
3gwz_A369 MMCR; methyltransferase, mitomycin, S-adenosyl met 92.46
3mgg_A276 Methyltransferase; NYSGXRC, PSI-II, protein struct 92.17
3jwh_A217 HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena 91.98
1qzz_A374 RDMB, aclacinomycin-10-hydroxylase; anthracycline, 91.94
3i53_A332 O-methyltransferase; CO-complex, rossmann-like fol 91.82
1tw3_A360 COMT, carminomycin 4-O-methyltransferase; anthracy 91.41
1xtp_A254 LMAJ004091AAA; SGPP, structural genomics, PSI, pro 91.32
3lcv_B281 Sisomicin-gentamicin resistance methylase SGM; ant 91.28
3dlc_A219 Putative S-adenosyl-L-methionine-dependent methylt 91.07
3hem_A302 Cyclopropane-fatty-acyl-phospholipid synthase 2; p 91.02
3h2b_A203 SAM-dependent methyltransferase; alpha-beta protei 90.69
3jwg_A219 HEN1, methyltransferase type 12; 1.90A {Clostridiu 90.38
3vc1_A312 Geranyl diphosphate 2-C-methyltransferase; rossman 90.19
3lst_A348 CALO1 methyltransferase; calicheamicin, enediyne, 89.16
3e23_A211 Uncharacterized protein RPA2492; alpha-beta protei 88.99
3lcc_A235 Putative methyl chloride transferase; halide methy 88.98
3reo_A368 (ISO)eugenol O-methyltransferase; directed evoluti 88.69
3m70_A286 Tellurite resistance protein TEHB homolog; structu 87.98
4fsd_A383 Arsenic methyltransferase; rossmann fold; 1.75A {C 87.75
3l8d_A242 Methyltransferase; structural genomics, PSI, nysgr 87.28
1kpg_A287 CFA synthase;, cyclopropane-fatty-acyl-phospholipi 86.41
3ocj_A305 Putative exported protein; structural genomics, PS 86.09
3kkz_A267 Uncharacterized protein Q5LES9; putative methyltra 85.5
3hnr_A220 Probable methyltransferase BT9727_4108; structural 85.25
3fzg_A200 16S rRNA methylase; methyltransferase, plasmid, tr 84.83
3p9c_A364 Caffeic acid O-methyltransferase; S-adenosylmethio 84.16
3ccf_A279 Cyclopropane-fatty-acyl-phospholipid synthase; YP_ 83.79
3frh_A253 16S rRNA methylase; methyltransferase domain, heli 83.64
2qe6_A274 Uncharacterized protein TFU_2867; putative methylt 82.92
3dli_A240 Methyltransferase; PSI-II, NYSGXRC, structural gen 82.82
3g5l_A253 Putative S-adenosylmethionine dependent methyltran 82.32
2o57_A297 Putative sarcosine dimethylglycine methyltransfera 81.98
2xvm_A199 Tellurite resistance protein TEHB; antibiotic resi 81.83
3mq2_A218 16S rRNA methyltransferase; methyltranferase, ribo 81.1
3ofk_A216 Nodulation protein S; NODS, N-methyltransferase, S 81.05
4dcm_A375 Ribosomal RNA large subunit methyltransferase G; 2 80.62
2fk8_A318 Methoxy mycolic acid synthase 4; S-adenosylmethion 80.53
4htf_A285 S-adenosylmethionine-dependent methyltransferase; 80.24
3thr_A293 Glycine N-methyltransferase; GNMT, folate, methylt 80.12
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* Back     alignment and structure
Probab=97.47  E-value=0.0068  Score=59.25  Aligned_cols=168  Identities=18%  Similarity=0.295  Sum_probs=90.6

Q ss_pred             eeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEEeeecccccccC
Q 037028          242 LVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFLAVEKSLETLQ  321 (503)
Q Consensus       242 ~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF~~v~~~le~l~  321 (503)
                      .-+|+|+|.|.    |    .+...|+.+-+ +| ..+||||+.+...++.+.+++.++-  ...+++|.  ..++.++.
T Consensus        71 ~~~vLDlGcGt----G----~~~~~la~~~~-~~-~~~v~gvD~s~~ml~~A~~~~~~~~--~~~~v~~~--~~D~~~~~  136 (261)
T 4gek_A           71 GTQVYDLGCSL----G----AATLSVRRNIH-HD-NCKIIAIDNSPAMIERCRRHIDAYK--APTPVDVI--EGDIRDIA  136 (261)
T ss_dssp             TCEEEEETCTT----T----HHHHHHHHTCC-SS-SCEEEEEESCHHHHHHHHHHHHTSC--CSSCEEEE--ESCTTTCC
T ss_pred             CCEEEEEeCCC----C----HHHHHHHHhcC-CC-CCEEEEEECCHHHHHHHHHHHHhhc--cCceEEEe--eccccccc
Confidence            34799999643    3    34455666543 34 5899999999888888877765432  22345553  23444433


Q ss_pred             cccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCc-EEEEEeecCCCCCCchHHHHHHHHHHHHHHHhhh
Q 037028          322 AKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRL-HQLSPK-VVMLVEQDSSHNGPFFLGRFMEALHYYSAIFDSL  399 (503)
Q Consensus       322 ~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pk-vvvlvE~ea~~ns~~F~~RF~eAL~yYsAlFDSL  399 (503)
                      .     .+-.+++  +.+.||++..+   ....+|+.| +.|+|. ++++.|.-... .+.+...+.+....|. ...  
T Consensus       137 ~-----~~~d~v~--~~~~l~~~~~~---~~~~~l~~i~~~LkpGG~lii~e~~~~~-~~~~~~~~~~~~~~~~-~~~--  202 (261)
T 4gek_A          137 I-----ENASMVV--LNFTLQFLEPS---ERQALLDKIYQGLNPGGALVLSEKFSFE-DAKVGELLFNMHHDFK-RAN--  202 (261)
T ss_dssp             C-----CSEEEEE--EESCGGGSCHH---HHHHHHHHHHHHEEEEEEEEEEEEBCCS-SHHHHHHHHHHHHHHH-HHT--
T ss_pred             c-----cccccce--eeeeeeecCch---hHhHHHHHHHHHcCCCcEEEEEeccCCC-CHHHHHHHHHHHHHHH-HHc--
Confidence            2     2223444  44567888642   235677776 669997 45555654332 2222222222111111 100  


Q ss_pred             hccCCCC--CHHHHHHHHHHHHHHHhHhhhcCCCCccccccchhhHHHHHhcCCceeecC
Q 037028          400 DAMLPKY--DTKRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQSVPI  457 (503)
Q Consensus       400 da~lp~~--~~eR~~iE~~~lg~eI~NiVAcEG~~RvERhE~~~~Wr~rm~~aGF~~~~l  457 (503)
                        .++..  ...|..+|         ++         .+..+.+.++.+|+.|||+.+.+
T Consensus       203 --g~s~~ei~~~~~~l~---------~~---------~~~~s~~~~~~~L~~AGF~~ve~  242 (261)
T 4gek_A          203 --GYSELEISQKRSMLE---------NV---------MLTDSVETHKARLHKAGFEHSEL  242 (261)
T ss_dssp             --TGGGSTTHHHHHHHH---------HH---------CCCBCHHHHHHHHHHHTCSEEEE
T ss_pred             --CCCHHHHHHHHhhhc---------cc---------ccCCCHHHHHHHHHHcCCCeEEE
Confidence              01110  11222222         22         23467788999999999988754
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Back     alignment and structure
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Back     alignment and structure
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Back     alignment and structure
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Back     alignment and structure
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Back     alignment and structure
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Back     alignment and structure
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Back     alignment and structure
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Back     alignment and structure
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Back     alignment and structure
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* Back     alignment and structure
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Back     alignment and structure
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Back     alignment and structure
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Back     alignment and structure
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Back     alignment and structure
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Back     alignment and structure
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Back     alignment and structure
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Back     alignment and structure
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Back     alignment and structure
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Back     alignment and structure
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Back     alignment and structure
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* Back     alignment and structure
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Back     alignment and structure
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* Back     alignment and structure
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Back     alignment and structure
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* Back     alignment and structure
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Back     alignment and structure
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Back     alignment and structure
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Back     alignment and structure
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* Back     alignment and structure
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Back     alignment and structure
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Back     alignment and structure
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} Back     alignment and structure
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Back     alignment and structure
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Back     alignment and structure
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Back     alignment and structure
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} Back     alignment and structure
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Back     alignment and structure
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* Back     alignment and structure
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} Back     alignment and structure
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Back     alignment and structure
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Back     alignment and structure
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Back     alignment and structure
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Back     alignment and structure
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Back     alignment and structure
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Back     alignment and structure
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Back     alignment and structure
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Back     alignment and structure
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} Back     alignment and structure
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query503
d1im8a_225 Hypothetical protein HI0319 (YecO) {Haemophilus in 97.43
d1tw3a2253 Carminomycin 4-O-methyltransferase {Streptomyces p 96.4
d1qzza2256 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 96.21
d1jqea_280 Histamine methyltransferase {Human (Homo sapiens) 95.44
d1xxla_234 Hypothetical protein YcgJ {Bacillus subtilis [TaxI 94.52
d2fk8a1280 Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri 94.33
d1vlma_208 Possible histamine N-methyltransferase TM1293 {The 94.27
d2i6ga1198 Putative methyltransferase TehB {Salmonella typhim 93.15
d1vl5a_231 Hypothetical protein BH2331 {Bacillus halodurans [ 92.8
d1ve3a1226 Hypothetical protein PH0226 {Archaeon Pyrococcus h 92.61
d1fp2a2244 Isoflavone O-methyltransferase {Alfalfa (Medicago 92.59
d1ri5a_252 mRNA cap (Guanine N-7) methyltransferase {Fungus ( 92.55
d1fp1d2244 Chalcone O-methyltransferase {Alfalfa (Medicago sa 91.6
d1wzna1251 Hypothetical methyltransferase PH1305 {Archaeon Py 88.98
d2gh1a1281 Methyltransferase BC2162 {Bacillus cereus [TaxId: 87.97
d2ex4a1222 Adrenal gland protein AD-003 (C9orf32) {Human (Hom 87.94
d1y8ca_246 Putative methyltransferase CAC2371 {Clostridium ac 86.52
d2o57a1282 Putative sarcosine dimethylglycine methyltransfera 85.76
d1kyza2243 Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra 84.86
d1nkva_245 Hypothetical Protein YjhP {Escherichia coli [TaxId 84.34
d1xvaa_292 Glycine N-methyltransferase {Rat (Rattus norvegicu 83.85
d2bzga1229 Thiopurine S-methyltransferase {Human (Homo sapien 82.12
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=97.43  E-value=0.0058  Score=55.30  Aligned_cols=109  Identities=17%  Similarity=0.225  Sum_probs=65.4

Q ss_pred             ceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEEeeeccccccc
Q 037028          241 SLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFLAVEKSLETL  320 (503)
Q Consensus       241 ~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF~~v~~~le~l  320 (503)
                      ..-||+|+|.|-|        .+...|+.... .| ..++|||+.+.+.++.+.+++.    ..+....++.+..+..++
T Consensus        39 ~~~~vLDlGCGtG--------~~~~~l~~~~~-~~-~~~v~giD~S~~ml~~A~~~~~----~~~~~~~~~~~~~d~~~~  104 (225)
T d1im8a_          39 ADSNVYDLGCSRG--------AATLSARRNIN-QP-NVKIIGIDNSQPMVERCRQHIA----AYHSEIPVEILCNDIRHV  104 (225)
T ss_dssp             TTCEEEEESCTTC--------HHHHHHHHTCC-CS-SCEEEEECSCHHHHHHHHHHHH----TSCCSSCEEEECSCTTTC
T ss_pred             CCCEEEEeccchh--------hHHHHHHHhhc-CC-CCceEEeCCCHHHHHHHHHHhH----hhcccchhhhccchhhcc
Confidence            3458999996433        33344554322 34 6999999999888888877775    333333333333232222


Q ss_pred             CcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcE-EEEEeec
Q 037028          321 QAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRL-HQLSPKV-VMLVEQD  373 (503)
Q Consensus       321 ~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pkv-vvlvE~e  373 (503)
                             ..++.-+|.|.+.||++..+   ....+|+.| |.|+|.- +++.|.-
T Consensus       105 -------~~~~~d~i~~~~~l~~~~~~---d~~~~l~~i~~~LkpgG~li~~~~~  149 (225)
T d1im8a_         105 -------EIKNASMVILNFTLQFLPPE---DRIALLTKIYEGLNPNGVLVLSEKF  149 (225)
T ss_dssp             -------CCCSEEEEEEESCGGGSCGG---GHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             -------ccccceeeEEeeeccccChh---hHHHHHHHHHHhCCCCceeeccccc
Confidence                   22344456677778887543   234677777 6799985 4444443
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Back     information, alignment and structure
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Back     information, alignment and structure
>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure