Citrus Sinensis ID: 037079

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-
Protein Sequence
CHGKRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLVKERNKCKGECLSMTKLTSASIYKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTITPGFKIYVHFTLRIRDQVRGKHKEANTSIWFRSSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLGISKAL
Secondary Structure (PSIPRED)
ccccEEEEccccccccccccccHHHHccccccEEEccEEEEccEEEEEEccccccEEccccccccccccEEEEEEcccccccccEEEcccEEEcccEEEEEEEEcccccccccEEEEEEEEccccccccccEEEEEEEEEEEccccccEEEEEEEEEccccccccccccccccccccccEEEccEEEEEEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccEEEcccccccccccccccHHHcccccccEEEccEEEEEEEEEEEccccccccccccccccccccccEEEEEEcccHcccccccccEEEEcccEEEEEEEEcccccccccEEEEEEEEccccccccccEEEEEEEEEEEEcccccEEEEEEEEEcccccccccccEHHHcccccccEEEccEEEEEEEEEEEEEcccc
Coil and Loop (DISEMBL)
chgkrrrfhglklewgfdqfipleefndasngylvddtcvFGAEVLVKERNkckgeclsmtkltsaSIYKHVWKIENFSKLEAKRHESEVFIVRDQkwkiqlhpkgiksgtgshVSMSLALvdsstitpgfkIYVHFTLRIRDqvrgkhkeantsiwfrsswgwprfaELSYLNeagngflvndgciVEAEVSVLGISKAL
Flexible Loop (DISEMBL)
chgkrrrfhglklewgfDQFIPLEEFNDASNGYLVDDTCVFGAEVLVKErnkckgeclsmtkltsasiyKHVWKIENFSKLEAKRHESEvfivrdqkwkiqlhpkgiksgtgsHVSMSLALVDSSTITPGFKIYVHFTLRIRDqvrgkhkeantsiwfrsswgwPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLGISKAL
Low Complexity Region (SEG)
CHGKRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLVKERNKCKGECLSMTKLTSASIYKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTITPGFKIYVHFTLRIRDQVRGKHKEANTSIWFRSSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLGISKAL
Disordered region (IsUnstruct)
*******FHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLVKERNKCKGECLSMTKLTSASIYKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTITPGFKIYVHFTLRIRDQVRGKHKEANTSIWFRSSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLGI****
Disordered Region (DISOPRED)
****RRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLVKE***************SASIYKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTITPGFKIYVHFTLRIRDQVRGKHKEANTSIWFRSSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLGISKAL
Disordered Region (DISEMBL)
CHGKRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLVKERNKCKGECLSMTKLTSASIYKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTITPGFKIYVHFTLRIRDQVRGKHKEANTSIWFRSSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLGISKAL
Disordered Region (DISPRO)
***KRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLVKERNKC*****SMTKLTSASIYKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTITPGFKIYVHFTLRIRDQVRGKHKEANTSIWFRSSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLGISKAL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
CHGKRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLVKERNKCKGECLSMTKLTSASIYKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTITPGFKIYVHFTLRIRDQVRGKHKEANTSIWFRSSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLGISKAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	201	2.2.26 [Sep-21-2011]
Q9FPT1	1116	Ubiquitin carboxyl-termin	no	no	0.606	0.109	0.372	4e-17
Q84WU2	1115	Ubiquitin carboxyl-termin	no	no	0.606	0.109	0.372	7e-17
Q8RY18	1055	MATH domain-containing pr	no	no	0.601	0.114	0.307	2e-10
Q54NN4	427	TNF receptor-associated f	no	no	0.701	0.330	0.258	8e-08
Q8T126	1304	Probable inactive serine/	no	no	0.766	0.118	0.242	0.0002

>sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2

 Score = 88.2 bits (217), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/129 (37%), Positives = 73/129 (56%), Gaps = 7/129 (5%)

Query: 70  KHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTITP 129
           K  W I NFS+   ++H S+VF+V   KW+I + PKG       H+SM L + D++++  
Sbjct: 56  KFTWTIPNFSRQNTRKHYSDVFVVGGYKWRILIFPKG---NNVDHLSMYLDVSDAASLPY 112

Query: 130 GFKIYVHFTLRIRDQVRGKH---KEANTSIWFRSS-WGWPRFAELSYLNEAGNGFLVNDG 185
           G+  Y  F+L + +Q+  ++   KE       R S WG+  F  LS L +   G+LVND 
Sbjct: 113 GWSRYAQFSLAVVNQIHTRYTVRKETQHQFNARESDWGFTSFMPLSELYDPSRGYLVNDT 172

Query: 186 CIVEAEVSV 194
            +VEAEV+V
Sbjct: 173 VLVEAEVAV 181

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2

>sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1

 Score = 87.0 bits (214), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 7/129 (5%)

Query: 70  KHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTITP 129
           K  W I  F++L  ++H S+VF+V   KW+I + PKG       H+SM L + D++ +  
Sbjct: 55  KFTWTIPMFTRLNTRKHYSDVFVVGGYKWRILIFPKG---NNVDHLSMYLDVADAANLPY 111

Query: 130 GFKIYVHFTLRIRDQVRGKH---KEANTSIWFRSS-WGWPRFAELSYLNEAGNGFLVNDG 185
           G+  Y  F+L + +QV  ++   KE       R S WG+  F  LS L E   G+LVND 
Sbjct: 112 GWSRYSQFSLAVVNQVNNRYSIRKETQHQFNARESDWGFTSFMPLSELYEPTRGYLVNDT 171

Query: 186 CIVEAEVSV 194
            ++EAEV+V
Sbjct: 172 VLIEAEVAV 180

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q8RY18|Y5436_ARATH MATH domain-containing protein At5g43560 OS=Arabidopsis thaliana GN=At5g43560 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 68/130 (52%), Gaps = 9/130 (6%)

Query: 70  KHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTITP 129
           K+ W IE FS +  +    +VF V   KW I ++P+G      +H+S+ L +     + P
Sbjct: 70  KNTWTIEKFSDINKRELRGDVFEVGGYKWYILIYPQGCD--VCNHLSLFLCVAHHEKLLP 127

Query: 130 GFKIYVHFTLRI--RDQVRGKHKEANTSIWFRS-SWGWPRFAELSYLNEAGNGFLVNDGC 186
           G+  +  FT+ +  +D  + KH +     W +   WGW +F EL  L E   GF+ + GC
Sbjct: 128 GWSHFAQFTIAVSNKDPKKSKHSDTLHRFWKKEHDWGWKKFIELPKLKE---GFIDDSGC 184

Query: 187 I-VEAEVSVL 195
           + ++A+V V+
Sbjct: 185 LTIKAQVQVI 194

Arabidopsis thaliana (taxid: 3702)

>sp|Q54NN4|Y8514_DICDI TNF receptor-associated factor family protein DDB_G0285149 OS=Dictyostelium discoideum GN=DDB_G0285149 PE=3 SV=1

 Score = 57.0 bits (136), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 14/155 (9%)

Query: 50  RNKCKGECLSMTKLTSASIYKHVWKIENFSK----------LEAKRHESEVFIVRDQKWK 99
           R KC  E L   +LT+ + Y + W IEN+ +             KR    +F    +K+ 
Sbjct: 267 RLKCSHETLE-KRLTNINKYSNQWVIENWMQKVIDIPNDEVTSTKRVSCPMFYFNSRKYN 325

Query: 100 IQLHPKGIKSGTGSHVSMSLALVDSSTITPGFKIYVHFTLRIRDQVRGKHKEANTSIWFR 159
           +   P G       ++S+ L L ++S   P   I   F +   D  +   KE N+     
Sbjct: 326 VSCFPNGFTPANKDYISLYLHLHEAS---PNINIKFSFEIVNSDPTKSIKKEKNSYFQND 382

Query: 160 SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSV 194
              GW +FAE   +N  G GF+V +   ++ E+ +
Sbjct: 383 KGIGWEKFAECKTINTLGEGFVVGNKLTIKFEIEI 417

Probable adapter protein and signal transducer that links members of the tumor necrosis factor receptor family to different signaling pathways by association with the receptor cytoplasmic domain and kinases.

Dictyostelium discoideum (taxid: 44689)

>sp|Q8T126|FNKC_DICDI Probable inactive serine/threonine-protein kinase fnkC OS=Dictyostelium discoideum GN=fnkC PE=3 SV=1

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 86/190 (45%), Gaps = 36/190 (18%)

Query: 16   GFDQFIPLEEFNDASNGYLVDDTCVFGAEVLVKERNKCKGECLSMTKLTSASIYKHVWKI 75
            G+  FI L    + +NG+LV++T             K + +    + L +     ++   
Sbjct: 1125 GYGSFIGLFSLLNPNNGFLVNNTI------------KVRIDAAPTSPLVNTYDKYNIGLN 1172

Query: 76   ENFS---KLEAKRHE---SEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTITP 129
            + FS    + +K+ E   S +F+   +KW I+++P G  S   +++S+ L   D      
Sbjct: 1173 QAFSYSVPMMSKKSEPFISPIFMSCGRKWIIKIYPMGQPSS--NYMSVFLEYRDEGEEN- 1229

Query: 130  GFKIYVHFTLRIRDQVRGKHKEANTSIWFR-------SSWGWPRFAELSYLNEAGNGFLV 182
                 VHF+L +  Q+   + E +   W +       +S+G+P+F  +S L +   GFLV
Sbjct: 1230 -----VHFSLELISQL---YPEQSIKYWVQYRFNSKSNSFGYPKFIGVSTLMDPDMGFLV 1281

Query: 183  NDGCIVEAEV 192
            ND  I+   +
Sbjct: 1282 NDTIILNVSI 1291

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
255556544	455	nucleic acid binding protein, putative [	0.980	0.432	0.546	1e-55
11994555	304	unnamed protein product [Arabidopsis tha	0.985	0.651	0.509	3e-54
18401489	309	TRAF-like family protein [Arabidopsis th	0.985	0.640	0.509	3e-54
297830352	309	hypothetical protein ARALYDRAFT_479214 [	0.985	0.640	0.504	5e-54
21537273	309	unknown [Arabidopsis thaliana]	0.985	0.640	0.504	5e-54
449441502	316	PREDICTED: BTB/POZ and MATH domain-conta	0.975	0.620	0.527	7e-52
449522688	316	PREDICTED: BTB/POZ and MATH domain-conta	0.975	0.620	0.527	1e-51
356519881	310	PREDICTED: uncharacterized protein LOC10	0.965	0.625	0.485	8e-45
224100507	249	predicted protein [Populus trichocarpa]	0.950	0.767	0.497	4e-43
357479139	311	Ubiquitin carboxyl-terminal hydrolase [M	0.975	0.630	0.470	3e-42

>gi|255556544|ref|XP_002519306.1| nucleic acid binding protein, putative [Ricinus communis] gi|223541621|gb|EEF43170.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 111/203 (54%), Positives = 138/203 (67%), Gaps = 6/203 (2%)

Query: 3   GKRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLV-KERNKCKGECLSMT 61
           GK  RFHG +LEWGFDQ IPL    D  NGYLV+DTCVFGAEV V KE    KGECLSM 
Sbjct: 255 GKECRFHGFRLEWGFDQLIPLATLKDTKNGYLVEDTCVFGAEVFVRKESCTGKGECLSMI 314

Query: 62  KLTSASIYKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLAL 121
           K  S+S  K++W+ ENFSKL+A+ ++S+ F+  DQ+WKIQL+PKG   G+G+H+S+ LAL
Sbjct: 315 K--SSSTSKNLWRFENFSKLDAECNDSKTFVAGDQRWKIQLYPKGKGLGSGTHLSLFLAL 372

Query: 122 VDSSTITPGFKIYVHFTLRIRDQVRGKHKEANTSIWFRSS---WGWPRFAELSYLNEAGN 178
            D + ITPGFKI   FTLRI DQ RG H     + WF +S    GW RF  L  L  + N
Sbjct: 373 ADLTAITPGFKILADFTLRILDQSRGSHLFGKANFWFSASSSVCGWSRFYPLDQLYASSN 432

Query: 179 GFLVNDGCIVEAEVSVLGISKAL 201
            +L  D C+ EAE++VLGI+  L
Sbjct: 433 AYLFKDTCLGEAEITVLGITDEL 455

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11994555|dbj|BAB02742.1| unnamed protein product [Arabidopsis thaliana]

 Score =  216 bits (551), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 104/204 (50%), Positives = 141/204 (69%), Gaps = 6/204 (2%)

Query: 2   HGKRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLV-KERNKCKGECLSM 60
            G  RRFH +K EWGFD+FIP   F+DASNGYL++DTC+FGA+V V KER   +GECLSM
Sbjct: 103 QGNERRFHSVKREWGFDKFIPTGTFSDASNGYLMEDTCMFGADVFVSKERRSGRGECLSM 162

Query: 61  TKLTSASIYKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLA 120
            K  ++S  KHVWKIENFSKL+ + ++S  F   D+KWKI+ +P G K GTG+H+S+ L 
Sbjct: 163 IKDATSS--KHVWKIENFSKLDKESYDSNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYLT 220

Query: 121 LVDSSTITPGFKIYVHFTLRIRDQVRGKHKEANTSIWF---RSSWGWPRFAELSYLNEAG 177
           LVD  TI+ G KI+V FT+RI DQ++G+H     + WF    S  GW ++  + Y  +  
Sbjct: 221 LVDPETISDGTKIFVEFTIRIFDQLQGRHIAGKVTKWFSRSSSEHGWVKYVSMVYFTQPN 280

Query: 178 NGFLVNDGCIVEAEVSVLGISKAL 201
           +G L+ D C+VEA+V V GI+ A+
Sbjct: 281 SGLLLKDVCLVEADVCVHGITSAI 304

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401489|ref|NP_566576.1| TRAF-like family protein [Arabidopsis thaliana] gi|332642426|gb|AEE75947.1| TRAF-like family protein [Arabidopsis thaliana]

 Score =  216 bits (551), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 104/204 (50%), Positives = 141/204 (69%), Gaps = 6/204 (2%)

Query: 2   HGKRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLV-KERNKCKGECLSM 60
            G  RRFH +K EWGFD+FIP   F+DASNGYL++DTC+FGA+V V KER   +GECLSM
Sbjct: 108 QGNERRFHSVKREWGFDKFIPTGTFSDASNGYLMEDTCMFGADVFVSKERRSGRGECLSM 167

Query: 61  TKLTSASIYKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLA 120
            K  ++S  KHVWKIENFSKL+ + ++S  F   D+KWKI+ +P G K GTG+H+S+ L 
Sbjct: 168 IKDATSS--KHVWKIENFSKLDKESYDSNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYLT 225

Query: 121 LVDSSTITPGFKIYVHFTLRIRDQVRGKHKEANTSIWF---RSSWGWPRFAELSYLNEAG 177
           LVD  TI+ G KI+V FT+RI DQ++G+H     + WF    S  GW ++  + Y  +  
Sbjct: 226 LVDPETISDGTKIFVEFTIRIFDQLQGRHIAGKVTKWFSRSSSEHGWVKYVSMVYFTQPN 285

Query: 178 NGFLVNDGCIVEAEVSVLGISKAL 201
           +G L+ D C+VEA+V V GI+ A+
Sbjct: 286 SGLLLKDVCLVEADVCVHGITSAI 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830352|ref|XP_002883058.1| hypothetical protein ARALYDRAFT_479214 [Arabidopsis lyrata subsp. lyrata] gi|297328898|gb|EFH59317.1| hypothetical protein ARALYDRAFT_479214 [Arabidopsis lyrata subsp. lyrata]

 Score =  216 bits (550), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 103/204 (50%), Positives = 141/204 (69%), Gaps = 6/204 (2%)

Query: 2   HGKRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLV-KERNKCKGECLSM 60
            G  RRFH +K EWGFD+FIP   F+DASNGYL++DTC+FGA+V V KER   +GECLSM
Sbjct: 108 QGNERRFHAVKREWGFDKFIPTGTFSDASNGYLMEDTCMFGADVFVSKERRSGRGECLSM 167

Query: 61  TKLTSASIYKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLA 120
            K  ++S  KHVWKIENFSKL+ + ++S  F   D+KWK++ +P G K GTG+H+S+ L 
Sbjct: 168 IKDATSS--KHVWKIENFSKLDKESYDSNAFFAGDRKWKVRFYPTGTKQGTGTHLSIYLT 225

Query: 121 LVDSSTITPGFKIYVHFTLRIRDQVRGKHKEANTSIWF---RSSWGWPRFAELSYLNEAG 177
           LVD  TI+ G KI+V FT+RI DQ++G+H     + WF    S  GW ++  + Y  +  
Sbjct: 226 LVDPETISDGTKIFVEFTIRIFDQLQGRHIAGKVTKWFSRSSSEHGWVKYVSMVYFTQPN 285

Query: 178 NGFLVNDGCIVEAEVSVLGISKAL 201
           +G L+ D C+VEA+V V GI+ A+
Sbjct: 286 SGLLLKDVCLVEADVCVHGITSAI 309

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537273|gb|AAM61614.1| unknown [Arabidopsis thaliana]

 Score =  216 bits (550), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 103/204 (50%), Positives = 141/204 (69%), Gaps = 6/204 (2%)

Query: 2   HGKRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLV-KERNKCKGECLSM 60
            G  RRFH +K EWGFD+FIP   F+D+SNGYL++DTC+FGA+V V KER   +GECLSM
Sbjct: 108 QGNERRFHSVKREWGFDKFIPTGTFSDSSNGYLMEDTCMFGADVFVSKERRSGRGECLSM 167

Query: 61  TKLTSASIYKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLA 120
            K  ++S  KHVWKIENFSKL+ + ++S  F   D+KWKI+ +P G K GTG+H+S+ L 
Sbjct: 168 IKDATSS--KHVWKIENFSKLDKESYDSNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYLT 225

Query: 121 LVDSSTITPGFKIYVHFTLRIRDQVRGKHKEANTSIWF---RSSWGWPRFAELSYLNEAG 177
           LVD  TI+ G KI+V FT+RI DQ++G+H     + WF    S  GW ++  + Y  +  
Sbjct: 226 LVDPETISDGTKIFVEFTIRIFDQLQGRHIAGKVTKWFSRSSSEHGWVKYVSMVYFTQPN 285

Query: 178 NGFLVNDGCIVEAEVSVLGISKAL 201
           +G L+ D C+VEA+V V GI+ A+
Sbjct: 286 SGLLLKDVCLVEADVCVHGITSAI 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441502|ref|XP_004138521.1| PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Cucumis sativus]

 Score =  209 bits (531), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 107/203 (52%), Positives = 137/203 (67%), Gaps = 7/203 (3%)

Query: 4   KRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLVKERN--KCKGECLSMT 61
           K RRF G+K +WGFD++I L+EF ++SNGYLVDD CVFGAEV V + N    KGECLSM 
Sbjct: 115 KPRRFRGMKKQWGFDKYISLKEFKESSNGYLVDDVCVFGAEVFVCKENFKGGKGECLSMI 174

Query: 62  KLTSASIYKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLAL 121
           K  S   YKHVWKI+NFSKL+A+ +ES++F   D+KWKI+++PKG  SG GSH+S  L L
Sbjct: 175 K--SPVTYKHVWKIDNFSKLDAESYESKIFNAGDKKWKIRVYPKGHGSGEGSHLSPYLEL 232

Query: 122 VDSSTITPGFKIYVHFTLRIRDQVRGKHKEANTSIWFRSS---WGWPRFAELSYLNEAGN 178
            D + + P  KIY   TLR++DQ+  KH     S WF +S    G PRF  L    +   
Sbjct: 233 ADPAALHPATKIYAEVTLRLQDQIYSKHHSGKVSYWFSASNPEVGGPRFILLDNFKQPNI 292

Query: 179 GFLVNDGCIVEAEVSVLGISKAL 201
           GFLV D  IVEAEVS++G++ A 
Sbjct: 293 GFLVKDAFIVEAEVSIIGVANAF 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522688|ref|XP_004168358.1| PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Cucumis sativus]

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 107/203 (52%), Positives = 137/203 (67%), Gaps = 7/203 (3%)

Query: 4   KRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLVKERN--KCKGECLSMT 61
           K RRF G+K +WGFD++I L+EF ++SNGYLVDD CVFGAEV V + N    KGECLSM 
Sbjct: 115 KPRRFRGMKKQWGFDKYISLKEFKESSNGYLVDDVCVFGAEVFVCKENFKGGKGECLSMI 174

Query: 62  KLTSASIYKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLAL 121
           K  S   YKHVWKI+NFSKL+A+ +ES++F   D+KWKI+++PKG  SG GSH+S  L L
Sbjct: 175 K--SPVTYKHVWKIDNFSKLDAESYESKIFNAGDKKWKIRVYPKGHGSGEGSHLSPYLEL 232

Query: 122 VDSSTITPGFKIYVHFTLRIRDQVRGKHKEANTSIWFRSS---WGWPRFAELSYLNEAGN 178
            D + + P  KIY   TLR++DQ+  KH     S WF +S    G PRF  L    +   
Sbjct: 233 ADPAALHPATKIYAEVTLRLQDQIYSKHHSGKVSYWFSASNPEVGGPRFILLDNFKQPNI 292

Query: 179 GFLVNDGCIVEAEVSVLGISKAL 201
           GFLV D  IVEAEV+V+G++ A 
Sbjct: 293 GFLVKDAFIVEAEVNVIGVANAF 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519881|ref|XP_003528597.1| PREDICTED: uncharacterized protein LOC100779090 [Glycine max]

 Score =  185 bits (470), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 97/200 (48%), Positives = 129/200 (64%), Gaps = 6/200 (3%)

Query: 6   RRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLV-KERNKCKGECLSMTKLT 64
           RRFH +K EWG DQFIPL +FN AS GYLVDDTC FGAEV V KER+  KGECL M K  
Sbjct: 112 RRFHKMKAEWGIDQFIPLRDFNLASKGYLVDDTCAFGAEVFVCKERSTGKGECLVMMK-- 169

Query: 65  SASIYKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDS 124
            A +YKH+++ +N SKL+ + ++S+ F   + KWKI+L+PKG  +  G+++S+ LAL D 
Sbjct: 170 EAILYKHLYEFDNLSKLDLECYDSKPFNAGNFKWKIKLYPKGKGAELGNYLSLYLALADP 229

Query: 125 STITPGFKIYVHFTLRIRDQVRGKHKEANTSIWFRSSW---GWPRFAELSYLNEAGNGFL 181
           S ++P  KIY   TLRI DQ + KH     + WF +S    G   F  ++       G++
Sbjct: 230 SALSPCSKIYAQITLRILDQKQAKHHFGKANYWFSASSHENGAAIFMPINNFTNQNFGYV 289

Query: 182 VNDGCIVEAEVSVLGISKAL 201
           V D C VEAEV +LG+  AL
Sbjct: 290 VKDSCFVEAEVIILGVVDAL 309

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100507|ref|XP_002311903.1| predicted protein [Populus trichocarpa] gi|222851723|gb|EEE89270.1| predicted protein [Populus trichocarpa]

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 100/201 (49%), Positives = 132/201 (65%), Gaps = 10/201 (4%)

Query: 3   GKRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLV-KERNKCKGECLSMT 61
           GK RRFHGLKLE GFDQFI L  FNDA  G++++DTCV GAEV V  ER++ KGE LSM 
Sbjct: 49  GKERRFHGLKLECGFDQFIKLSTFNDARYGFVLEDTCVLGAEVFVCGERSRGKGEVLSMK 108

Query: 62  KLTSASIYKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLAL 121
           K  +AS  K+ WKI +FSKL+ KR ES++F   D +WKI L+PKG   G G+H+S+ LAL
Sbjct: 109 KDPTAS--KYTWKIVDFSKLDEKRQESQIFSTGDHQWKIVLYPKGKGPGMGTHLSLYLAL 166

Query: 122 VDSSTITPGFKIYVHFTLRIRDQVRGKHKE--ANTSIWFRSSW---GWPRFAELSYLNEA 176
            D +T+  G ++Y  +TLR+ DQ+  +  +       WF +S    GW R+  LS L ++
Sbjct: 167 -DLATLPAGCRVYAEYTLRLVDQLYDRKFDMYGKAKSWFGASSSENGWSRYGLLS-LYQS 224

Query: 177 GNGFLVNDGCIVEAEVSVLGI 197
            N     D C++EAEV VLGI
Sbjct: 225 NNYLFAKDICMIEAEVIVLGI 245

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479139|ref|XP_003609855.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] gi|355510910|gb|AES92052.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula]

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 95/202 (47%), Positives = 129/202 (63%), Gaps = 6/202 (2%)

Query: 4   KRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLV-KERNKCKGECLSMTK 62
           K +RFH +K+EWGFDQFIPL++FN  S GYL+DD C FGAEV V +E    KGE L M K
Sbjct: 111 KEKRFHRMKVEWGFDQFIPLKDFNIGSKGYLLDDICAFGAEVFVCRENYTGKGESLIMMK 170

Query: 63  LTSASIYKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALV 122
              A  YKHVW+I++FSKL+++  +S+ F V + KW+I+L+PKG  +  G ++++ L L 
Sbjct: 171 --DALPYKHVWEIKDFSKLDSECCDSKPFNVGNYKWQIKLYPKGKATDLGRYLALYLTLA 228

Query: 123 DSSTITPGFKIYVHFTLRIRDQVRGKHKEANTSIWFRSS---WGWPRFAELSYLNEAGNG 179
           + +TI PG KIY    LRI DQ + KH+    + WF +S    G  RF   S       G
Sbjct: 229 NPTTIPPGSKIYAQTILRILDQKQSKHQFWKANYWFSASSHEHGTSRFILCSNFTSQYLG 288

Query: 180 FLVNDGCIVEAEVSVLGISKAL 201
           +LV D C V+ EV+VLG+  AL
Sbjct: 289 YLVKDICFVDVEVTVLGVVDAL 310

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
TAIR|locus:2089045	309	AT3G17380 "AT3G17380" [Arabido	0.980	0.637	0.522	7e-54
TAIR|locus:2092344	379	AT3G20370 "AT3G20370" [Arabido	0.945	0.501	0.335	1.1e-25
TAIR|locus:2098318	370	AT3G28220 "AT3G28220" [Arabido	0.895	0.486	0.328	9e-22
TAIR|locus:2179744	351	AT5G26260 "AT5G26260" [Arabido	0.955	0.547	0.326	2.4e-21
TAIR|locus:2092329	363	AT3G20360 "AT3G20360" [Arabido	0.950	0.526	0.313	4.1e-20
TAIR|locus:2179699	350	AT5G26280 "AT5G26280" [Arabido	0.960	0.551	0.3	4.4e-20
TAIR|locus:2026745	231	AT1G69660 "AT1G69660" [Arabido	0.935	0.813	0.271	6.5e-19
TAIR|locus:2055998	420	AT2G04170 "AT2G04170" [Arabido	0.940	0.45	0.301	7.8e-19
TAIR|locus:2016590	396	ZW9 "AT1G58270" [Arabidopsis t	0.910	0.462	0.291	1.7e-18
TAIR|locus:2053674	365	AT2G15710 "AT2G15710" [Arabido	0.805	0.443	0.319	2.7e-17

TAIR|locus:2089045 AT3G17380 "AT3G17380" [Arabidopsis thaliana (taxid:3702)]

 Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
 Identities = 106/203 (52%), Positives = 143/203 (70%)

Query:     3 GKRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLV-KERNKCKGECLSMT 61
             G  RRFH +K EWGFD+FIP   F+DASNGYL++DTC+FGA+V V KER   +GECLSM 
Sbjct:   109 GNERRFHSVKREWGFDKFIPTGTFSDASNGYLMEDTCMFGADVFVSKERRSGRGECLSMI 168

Query:    62 KLTSASIYKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLAL 121
             K  ++S  KHVWKIENFSKL+ + ++S  F   D+KWKI+ +P G K GTG+H+S+ L L
Sbjct:   169 KDATSS--KHVWKIENFSKLDKESYDSNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYLTL 226

Query:   122 VDSSTITPGFKIYVHFTLRIRDQVRGKHKEANTSIWF-RSS--WGWPRFAELSYLNEAGN 178
             VD  TI+ G KI+V FT+RI DQ++G+H     + WF RSS   GW ++  + Y  +  +
Sbjct:   227 VDPETISDGTKIFVEFTIRIFDQLQGRHIAGKVTKWFSRSSSEHGWVKYVSMVYFTQPNS 286

Query:   179 GFLVNDGCIVEAEVSVLGISKAL 201
             G L+ D C+VEA+V V GI+ A+
Sbjct:   287 GLLLKDVCLVEADVCVHGITSAI 309

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092344 AT3G20370 "AT3G20370" [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 67/200 (33%), Positives = 101/200 (50%)

Query:     7 RFHGLKLEWGFDQFIPLEEFNDASNGYLVD-DTCVFGAEVLVKERNKCKGECLSMTKLTS 65
             +F   K  WGF Q +P++ F D + GYL D D C FG +V +    + K E  S+T+  +
Sbjct:   179 KFSVFKTMWGFSQVLPIDTFKDPTKGYLYDGDHCEFGVDVTMPSLYE-KSELFSVTE--N 235

Query:    66 ASIYKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSS 125
                 +  W I  FS L    + SEVF +  + W IQ++P G+ +G G  +SM L L  + 
Sbjct:   236 FLNPRFTWTIRGFSTLLKNSYLSEVFSIGGRSWNIQINPSGLGTGEGKALSMYLGLNVNE 295

Query:   126 TITPGFKIYVHFTLRIRDQVRGKHKEANTSIWFRS------SWGWPRFAELSYLNEAGNG 179
                P  KIYV   LR  +Q+   + E    IW+        SWG+P F    YL ++  G
Sbjct:   296 IFRPYEKIYVRAKLRALNQLNLSNIERELDIWYNGPGYGEYSWGFPEFIYFPYLTDSSKG 355

Query:   180 FLVNDGCIVEAEVSVLGISK 199
             F+ ND  +V+ E+  +  +K
Sbjct:   356 FVKNDVLMVQVEMEAISSTK 375

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2098318 AT3G28220 "AT3G28220" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 62/189 (32%), Positives = 95/189 (50%)

Query:     6 RRFHGLKLEWGFDQFIPLEEFNDASNGYLVD-DTCVFGAEVLVKERNKCKGECLSMTKLT 64
             +RF   K  WG+    P  +  + + G+L D D  +FG +V V E    K E  S TK  
Sbjct:   176 KRFFLFKPYWGYGNVRPYTDVANPNAGWLFDGDNVLFGVDVFVTEVFN-KWEVFSFTKSL 234

Query:    65 SASIYKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDS 124
                +YK  W + NFS LE + + S+ F++  + W ++++P G   G G+ +S+ +  VD 
Sbjct:   235 HDRLYK--WTLPNFSSLEKQYYVSDKFVIGGRSWALKVYPSGDGEGQGNSLSLYVVAVD- 291

Query:   125 STITPGFKIYVHFTLRIRDQVRGKHKEANTSIWF--RSSWGWPRFAELSYLNEAGNGFLV 182
               + P  KIY+   LRI +Q   KH E     W    +SWG+ +F   + L +   G LV
Sbjct:   292 --VKPYDKIYLKAKLRIINQRDSKHMEKKVESWSDQANSWGFQKFVPFADLKDTSKGLLV 349

Query:   183 NDGCIVEAE 191
             ND   +E E
Sbjct:   350 NDTLKMEIE 358

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0031540 "regulation of anthocyanin biosynthetic process" evidence=RCA

TAIR|locus:2179744 AT5G26260 "AT5G26260" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 66/202 (32%), Positives = 101/202 (50%)

Query:     3 GKRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLVKERNKCKGECLSMTK 62
             G  +R++  K EWGF Q I L  F +A+ GYLV DT  FGAE+ +    + K E ++   
Sbjct:   150 GTVKRYNDAKKEWGFTQLISLPTFYNANEGYLVQDTASFGAEIFIVNPTE-KQEKVTFIS 208

Query:    63 LTSASIYKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALV 122
                 +++   WKI  FS LE K + S+ F+V D+ W++  +PKG   G    + + L   
Sbjct:   209 NPPDNVF--TWKILRFSTLEDKFYYSDDFLVGDRYWRLGFNPKGSGGGRPHALPIFLYAQ 266

Query:   123 DSSTITPGFKIYVHFTLRIRDQVRGKHKEANTSIWF--RSSWGWP--RFAELSYLNEAGN 178
                        +    LR+++Q    HK+  ++ W+  RS +G        +S L +A  
Sbjct:   267 GHKANAVVTNTWGAVNLRLKNQRSSNHKQLYSAAWYPIRSDYGVGVNNIILMSELKDASK 326

Query:   179 GFLVNDGCIVEAE---VSVLGI 197
             G++VND  I EAE   VSV  I
Sbjct:   327 GYMVNDAIIFEAEMVKVSVTNI 348

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2092329 AT3G20360 "AT3G20360" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 4.1e-20, P = 4.1e-20
 Identities = 64/204 (31%), Positives = 98/204 (48%)

Query:     7 RFHGLKLEWGFDQFIPLEEFNDASNGYLVD-DTCVFGAEVLVKERNKCKGECLSMTKLTS 65
             RF  +K  WGF + +PL  FN+  NGYL D D C FG +V++    + K E  S+TK  S
Sbjct:   162 RFSAIKRMWGFSKVLPLITFNNLKNGYLYDVDHCEFGVDVIIPPFYE-KSEVFSVTK--S 218

Query:    66 ASIYKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSS 125
                 +  W I+ +S L    + SE FI+  + W +++   G  +  G ++S+ L L    
Sbjct:   219 FPSPRFTWYIQGYSTLPTD-YLSEEFIIGGKSWNLRIFKNGFGAFEGKNLSLYLNLGPQE 277

Query:   126 TIT--PGFKIYVHFTLRIRDQVRGKHK---EANTSIWFRSS---WGWPRFAELSYLNEAG 177
              +   P  K+YV   LR+ +Q   +     E     WF      WG+  F  LS L  + 
Sbjct:   278 LLKAKPYDKVYVRAKLRVPNQFGSQSNLVLERPLDNWFSPQTIGWGYADFMPLSDLRNSS 337

Query:   178 NGFLVNDGCIVEAEVSVLGISKAL 201
              GFLVND  +V+  +  +  +  L
Sbjct:   338 KGFLVNDMLVVQVAMEEISSTNYL 361

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2179699 AT5G26280 "AT5G26280" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 60/200 (30%), Positives = 100/200 (50%)

Query:     3 GKRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLVKERNKCKGECLSMTK 62
             G  +R++  K EWGF Q IP   F +A+ GYL  DT  FGAE+ + +  + + E ++   
Sbjct:   149 GLVKRYNNAKKEWGFGQLIPRSTFYNANEGYLDQDTGSFGAEIFIVKPAQ-QQEKVTFIS 207

Query:    63 LTSASIYKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALV 122
                 +++   WKI  FS LE K + S+ F+V D+ W++  +PKG   G    + + L   
Sbjct:   208 NPPNNVF--TWKILRFSTLEDKFYYSDDFLVEDRYWRLGFNPKGDGGGRPHALPIFLFAQ 265

Query:   123 DSSTITPGFKIYVHFTLRIRDQVRGKHKEANTSIWFRSSWGWP----RFAELSYLNEAGN 178
                        +    LR+++Q    H++  ++ W+    G+         L+ LN+A  
Sbjct:   266 GHKANAVATNTWGAVNLRLKNQRSTNHRQIYSAAWYPIGSGYGVGVNNIILLADLNDASK 325

Query:   179 GFLVNDGCIVEAEVSVLGIS 198
             G+LVND  I EAE+  + I+
Sbjct:   326 GYLVNDAIIFEAEMVKVSIT 345

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

TAIR|locus:2026745 AT1G69660 "AT1G69660" [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 54/199 (27%), Positives = 100/199 (50%)

Query:     6 RRFHGLKLEWGFDQFIPLEEFNDASNGYLVDD-TCVFGAEVLVKERNKCKGECLSMTKLT 64
             +RF+ L++ WG  + +  + F +  NG++ +   C FG +VLV        E LS  +  
Sbjct:    34 KRFNALRMVWGLLKVLSYDTFTNPENGFIFEGGECEFGVDVLVAPP-LTNWEILSFDEKL 92

Query:    65 SASIYKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDS 124
             S    K  W ++NFS+L+   + S  + +  ++W ++L+PKG     G ++S+ + L DS
Sbjct:    93 SPP--KFSWNLKNFSELKEDVYTSNKYPMGGKEWVLKLYPKGNSRADGKYLSLYVHLADS 150

Query:   125 STITPGFKIYVHFTLRIRDQVRGKHKEANTSIWFRSS---WGWPRFAELSYLNEAGNGFL 181
              T+    K +    +R+ + +   H E  +S W++ S   WGW  F  ++ L +    +L
Sbjct:   151 ETLKSDEKNFKQGHVRVLNPLGSNHVEVQSSCWYKESSRGWGWDHFLSIANLRKT---YL 207

Query:   182 VNDGCI-VEAEVSVLGISK 199
               +  + VE E  V+  +K
Sbjct:   208 DKEDALNVEIEFKVVSATK 226

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055998 AT2G04170 "AT2G04170" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 7.8e-19, P = 7.8e-19
 Identities = 60/199 (30%), Positives = 96/199 (48%)

Query:     6 RRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLVKERNKCKGECLSMTKLTS 65
             +R++  K EWG+ + IPL  F D + GYL  D   FGAE+      + + +   +T +++
Sbjct:   222 KRYNDAKKEWGYGKLIPLTTFLDTNEGYLEQDIASFGAEIFSGTAVQVQEK---VTFISN 278

Query:    66 ASIYKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSS 125
                    WKI +FS LE K + S+ F+V D+ W++  +PKG   G    + + L      
Sbjct:   279 PPNNVFTWKILHFSNLEDKFYYSDDFLVEDRYWRLGFNPKGTGDGRSQAIPIFLYAQGHK 338

Query:   126 TITPGFKIYVHFTLRIRDQVRGKHKEANTSIWF--RSSWGWP--RFAELSYLNEAGNGFL 181
                     +    LR+++Q    H +  ++ W+  RS +G        L+  N+A  G+ 
Sbjct:   339 PNAVATNTWGAVNLRLKNQRSSNHAQIYSAAWYPTRSDYGVGVNTIISLAEFNDASKGYS 398

Query:   182 VNDGCIVEAE---VSVLGI 197
             VND  I EAE   VSV  I
Sbjct:   399 VNDSIIFEAEMVKVSVTNI 417

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2016590 ZW9 "AT1G58270" [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 58/199 (29%), Positives = 100/199 (50%)

Query:     6 RRFHGLKLEWGFDQFIPLEEFNDASNGYLVD-DTCVFGAEV-LVKERNKCKGECLSMTKL 63
             +RFH  K +WG  QF+P+  F + + GY  + ++ VFG ++ +VK       E  S  + 
Sbjct:   191 QRFHLFKQQWGLLQFLPIYYFENPAYGYFFEGESVVFGVDINIVKPFENW--EVFSNEQN 248

Query:    64 TSASIYKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVD 123
                 I++  W++  FS      + S+ F    + W ++++P G+ + TG+  S+SL L+ 
Sbjct:   249 IRDPIFE--WRLTKFSTRFLDSYTSDSFSSGGRNWALKVYPNGVGNATGN--SLSLYLLS 304

Query:   124 SSTITPGFKIYVHFTLRIRDQVRGKHKEANTSIW---FRSSWGWPRFAELSYLNEAGNGF 180
               +   G   YV   LR+ DQ++  + E   + W     + WG+ RF   + +     GF
Sbjct:   305 DQSNDKG---YVEAKLRVIDQIQSNNFEKKVAAWPNATENGWGFDRFLSFADIKNTSKGF 361

Query:   181 LVNDGCIVEAEVSVLGISK 199
             LVND   ++ EV +L  SK
Sbjct:   362 LVND--TLKLEVQILSFSK 378

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2053674 AT2G15710 "AT2G15710" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 2.7e-17, P = 2.7e-17
 Identities = 55/172 (31%), Positives = 86/172 (50%)

Query:     6 RRFHGLKLEWGFDQFIPLEEFNDASNGYLVD-DTCVFGAEVLVKERNKCKGECLSMTKLT 64
             +RF+ L+  WG  Q + LE FND  NGY  + + C FG +V+V      K E +S  +  
Sbjct:   190 KRFNALRTVWGLSQVLSLETFNDLENGYTFEGEQCEFGVDVMVASPIT-KWEVVSFDE-- 246

Query:    65 SASIYKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDS 124
                I K  W +++FS L+ + + SE F +  + W +Q++PKG        +S+ L L  S
Sbjct:   247 KLDILKFSWSVKDFSVLKEEFYVSERFSMGGRLWDLQMYPKGDPRRDKKWLSIFLRLSGS 306

Query:   125 STITPGFKIYVHFTLRIRDQVRGKHKEANTSIWFRSSWGWPRFAELSYLNEA 176
              T+T   KIYV   LR+ D +    ++ N        WG+  F   S L ++
Sbjct:   307 ETLTVDEKIYVIAHLRVLDPLGNWFRDRN------KGWGYLEFLSFSKLRKS 352

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT3G17380	meprin and TRAF homology domain-containing protein / MATH domain-containing protein; meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- TRAF-like (InterPro-IPR008974), MATH (InterPro-IPR002083); BEST Arabidopsis thaliana protein match is- meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR-AT3G220 [...] (309 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT1G63310	unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unkn [...] (154 aa)				•					0.451

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	201
cd00121	126	cd00121, MATH, MATH (meprin and TRAF-C homology) d	5e-28
smart00061	95	smart00061, MATH, meprin and TRAF homology	5e-08
COG5077	1089	COG5077, COG5077, Ubiquitin carboxyl-terminal hydr	5e-05
cd03774	139	cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP	2e-04
pfam00917	116	pfam00917, MATH, MATH domain	3e-04
cd00121	126	cd00121, MATH, MATH (meprin and TRAF-C homology) d	0.004
cd03775	134	cd03775, MATH_Ubp21p, Ubiquitin-specific protease	0.004

>gnl|CDD|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

 Score =  101 bits (254), Expect = 5e-28
 Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 7/127 (5%)

Query: 70  KHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTITP 129
           KH WKI NFS+LE +   S  F V   KW+I+++P G    +G ++S+ L L    +   
Sbjct: 2   KHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNG-DGESGDYLSLYLELDKGESDLE 60

Query: 130 GFKIYVHFTLRIRDQVRGKHKEANTSIWFRS----SWGWPRFAELSYLNEAGNGFLVNDG 185
            + +   FTL++ +Q  GK    + +  F S     WG+P+F     L +  + +LV+D 
Sbjct: 61  KWSVRAEFTLKLVNQNGGKSLSKSFTHVFFSEKGSGWGFPKFISWDDLED--SYYLVDDS 118

Query: 186 CIVEAEV 192
             +E EV
Sbjct: 119 LTIEVEV 125

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH domain has been shown to bind peptide/protein substrates in TRAFs and HAUSP. It is possible that the MATH domain in other members of this superfamily also interacts with various protein substrates. The TRAF domain may also be involved in the trimerization of TRAFs. Based on homology, it is postulated that the MATH domain in meprins may be involved in its tetramer assembly and that the MATH domain, in general, may take part in diverse modular arrangements defined by adjacent multimerization domains. Length = 126

>gnl|CDD|214496 smart00061, MATH, meprin and TRAF homology

 Score = 48.4 bits (116), Expect = 5e-08
 Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 8/99 (8%)

Query: 71  HVWKIENFSKLEA-KRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTITP 129
                +N S+LE  + + S      +  W+++++ K         +S+ L        + 
Sbjct: 2   LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRK------NGFLSLYLHCEKEECDSR 55

Query: 130 GFKIYVHFTLRIRDQVRGKHKEANTSI-WFRSSWGWPRF 167
            + I   FTL++  Q      + +  +    S WG+ +F
Sbjct: 56  KWSIEAEFTLKLVSQNGKSLSKKDKHVFEKPSGWGFSKF 94

Length = 95

>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 42.9 bits (101), Expect = 5e-05
 Identities = 38/133 (28%), Positives = 54/133 (40%), Gaps = 14/133 (10%)

Query: 73  WKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTITPGFK 132
           WK++ +S+L  K+ ES  F V    WKI L P+G       +VS+ L          G K
Sbjct: 43  WKVKRWSELA-KKVESPPFSVGGHTWKIILFPQGNNQ---CNVSVYLEYEPQELEETGGK 98

Query: 133 IY---VHFTLRIRDQVRGKHKEANTSIW-FRS---SWGWPRFAELSYLNEAGNGF--LVN 183
            Y     F   I +      +  N S   F      WG+  F +L+ L E   G    + 
Sbjct: 99  YYDCCAQFAFDISNPKYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLE 158

Query: 184 DGCIV-EAEVSVL 195
           +G +V    V VL
Sbjct: 159 EGTLVITVYVRVL 171

Length = 1089

>gnl|CDD|239743 cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 14/138 (10%)

Query: 69  YKHVWKIENFSKLEAKRHE---SEVFIVRDQ---KWKIQLHPKGIKSGTGSHVSMSLALV 122
           + ++W I NFS    +  E   S  F        KW ++++PKG+   +  ++S+ L LV
Sbjct: 5   FCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLV 64

Query: 123 DSSTITPGFKIYVHFTLRIRDQVRGKHKEANTSIWFR----SSWGWPRFAELSYLNEAGN 178
                 P  ++   F   I +    + K   +   +R      WG+ +F    +L +  N
Sbjct: 65  SC----PKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEAN 120

Query: 179 GFLVNDGCIVEAEVSVLG 196
           G L +D   +  EVSV+ 
Sbjct: 121 GLLPDDKLTLFCEVSVVQ 138

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, containing both MATH and BTB domains from C. elegans and plants which are excluded from this family. Length = 139

>gnl|CDD|216189 pfam00917, MATH, MATH domain

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 16/126 (12%)

Query: 75  IENFSKLEAK--RHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSL-ALVDSSTITPGF 131
           I+NFSK++     + S         W+++++  G        + + L           G+
Sbjct: 1   IKNFSKIKEGENYYTSPYEERFGIPWRLRIYRNG------GFLGLYLHCEKGEKDELLGW 54

Query: 132 KIYVHFTLRIRDQVRGKHKEANTSIWF---RSSWGWPRFAELSYLNEAGNGFLVNDGCIV 188
            I   FTL++     GK              + +GW +F     L    N ++V+D  I+
Sbjct: 55  SIETEFTLKLVSD-NGKSLTKRNKSHVFTKPTGYGWGKFISWDDLE---NDYVVDDTIII 110

Query: 189 EAEVSV 194
           EAEV +
Sbjct: 111 EAEVKI 116

This motif has been called the Meprin And TRAF-Homology (MATH) domain. This domain is hugely expanded in the nematode C. elegans. Length = 116

>gnl|CDD|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 15  WGFDQFIPLEEFNDASNGYLVDDTCVFGAEV 45
           WGF +FI  ++  D  + YLVDD+     EV
Sbjct: 97  WGFPKFISWDDLED--SYYLVDDSLTIEVEV 125

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH domain has been shown to bind peptide/protein substrates in TRAFs and HAUSP. It is possible that the MATH domain in other members of this superfamily also interacts with various protein substrates. The TRAF domain may also be involved in the trimerization of TRAFs. Based on homology, it is postulated that the MATH domain in meprins may be involved in its tetramer assembly and that the MATH domain, in general, may take part in diverse modular arrangements defined by adjacent multimerization domains. Length = 126

>gnl|CDD|239744 cd03775, MATH_Ubp21p, Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 21/129 (16%)

Query: 71  HVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALV----DSST 126
             W+I+N+S+LE K+  S  F     +W+I L P+G  S TG  VS+ L       + + 
Sbjct: 3   FTWRIKNWSELE-KKVHSPKFKCGGFEWRILLFPQG-NSQTGG-VSIYLEPHPEEEEKAP 59

Query: 127 ITPGFKIYVHFTLRIRD-------QVRGKHKEANTSIWFRSSWGWPRFAELSYL----NE 175
           +   + +   F L I +            H   N        WG+ RF EL  L     +
Sbjct: 60  LDEDWSVCAQFALVISNPGDPSIQLSNVAHHRFNAED---KDWGFTRFIELRKLAHRTPD 116

Query: 176 AGNGFLVND 184
             + FL N 
Sbjct: 117 KPSPFLENG 125

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding. Length = 134

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	201
cd03772	137	MATH_HAUSP Herpesvirus-associated ubiquitin-specif	99.97
cd03775	134	MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p	99.97
cd03774	139	MATH_SPOP Speckle-type POZ protein (SPOP) family,	99.96
cd03773	132	MATH_TRIM37 Tripartite motif containing protein 37	99.95
cd00270	149	MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-	99.94
cd03780	148	MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-A	99.93
cd03776	147	MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-A	99.93
cd03778	164	MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) A	99.93
cd03781	154	MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-A	99.93
cd03779	147	MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) A	99.93
cd00121	126	MATH MATH (meprin and TRAF-C homology) domain; an	99.93
cd03777	186	MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-A	99.93
cd03771	167	MATH_Meprin Meprin family, MATH domain; Meprins ar	99.92
PF00917	119	MATH: MATH domain; InterPro: IPR002083 Although ap	99.91
smart00061	95	MATH meprin and TRAF homology.	99.81
cd03783	167	MATH_Meprin_Alpha Meprin family, Alpha subunit, MA	99.81
cd03782	167	MATH_Meprin_Beta Meprin family, Beta subunit, MATH	99.78
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	99.62
KOG1987	297	consensus Speckle-type POZ protein SPOP and relate	98.88
cd03772	137	MATH_HAUSP Herpesvirus-associated ubiquitin-specif	98.72
cd03775	134	MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p	98.55
KOG1863	1093	consensus Ubiquitin carboxyl-terminal hydrolase [P	98.4
cd03774	139	MATH_SPOP Speckle-type POZ protein (SPOP) family,	98.21
PF00917	119	MATH: MATH domain; InterPro: IPR002083 Although ap	97.93
KOG1987	297	consensus Speckle-type POZ protein SPOP and relate	97.77
cd03773	132	MATH_TRIM37 Tripartite motif containing protein 37	97.46
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.24
cd00121	126	MATH MATH (meprin and TRAF-C homology) domain; an	97.17
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	95.15
KOG1863	1093	consensus Ubiquitin carboxyl-terminal hydrolase [P	94.99

>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway

Probab=99.97  E-value=3.8e-30  Score=192.01  Aligned_cols=127  Identities=22%  Similarity=0.322  Sum_probs=108.5

Q ss_pred             ccEEEEEEcccccccCceEeeCeEEEcCeEEEEEEEeCCCCC--CCCCEEEEEEEEccCCCCCCCceEEEEEEEEEEcCC
Q 037079           68 IYKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKS--GTGSHVSMSLALVDSSTITPGFKIYVHFTLRIRDQV  145 (201)
Q Consensus        68 ~~~~~w~I~nfS~l~~~~~~S~~f~~gg~~W~l~vyP~G~~~--~~~~~lSlyL~~~~~~~~~~~w~~~~~f~l~l~n~~  145 (201)
                      .++|+|+|+|||.+ ++.+.|++|.+||++|+|.+||+|...  +..++|||||.|.+.. ....|++.|+|+|+|+||.
T Consensus         2 ~~~~~~~I~~~S~l-~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~-~~~~w~i~a~~~~~l~~~~   79 (137)
T cd03772           2 EATFSFTVERFSRL-SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAES-DSTSWSCHAQAVLRIINYK   79 (137)
T ss_pred             CcEEEEEECCcccC-CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcC-CCCCCeEEEEEEEEEEcCC
Confidence            47899999999999 678999999999999999999999654  2348999999997643 3348999999999999998


Q ss_pred             CC-eeEEeeeceeec---cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEEEe
Q 037079          146 RG-KHKEANTSIWFR---SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLG  196 (201)
Q Consensus       146 ~~-~~~~~~~~~~F~---~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v~~  196 (201)
                      ++ .+..+...+.|.   ..|||++||+|++|+++++|||+||+|+|||+|+|-.
T Consensus        80 ~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~  134 (137)
T cd03772          80 DDEPSFSRRISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA  134 (137)
T ss_pred             CCcccEEEeeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence            53 334445567886   6899999999999987779999999999999998754

It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1

>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

Probab=99.97  E-value=3e-29  Score=186.52  Aligned_cols=121  Identities=26%  Similarity=0.438  Sum_probs=104.2

Q ss_pred             EEEEEEcccccccCceEeeCeEEEcCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCC----CCCCceEEEEEEEEEEcCC
Q 037079           70 KHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSST----ITPGFKIYVHFTLRIRDQV  145 (201)
Q Consensus        70 ~~~w~I~nfS~l~~~~~~S~~f~~gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~----~~~~w~~~~~f~l~l~n~~  145 (201)
                      +|+|+|+|||.+ ++.+.|++|.+|||+|+|.+||+|+..  .+|+||||.+.+.+.    .+++|++.|+|+|+|+||.
T Consensus         2 ~f~w~I~~fS~~-~~~~~S~~F~vGG~~W~l~~yP~G~~~--~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~   78 (134)
T cd03775           2 SFTWRIKNWSEL-EKKVHSPKFKCGGFEWRILLFPQGNSQ--TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPG   78 (134)
T ss_pred             cEEEEECCcccC-CcceeCCCEEECCeeEEEEEeCCCCCC--CCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCC
Confidence            599999999997 578999999999999999999999876  589999999976543    2568999999999999997


Q ss_pred             CCe-eEEeeeceeec---cCCCccceeechhhhcC----CCCeEeCCEEEEEEEEE
Q 037079          146 RGK-HKEANTSIWFR---SSWGWPRFAELSYLNEA----GNGFLVNDGCIVEAEVS  193 (201)
Q Consensus       146 ~~~-~~~~~~~~~F~---~~~G~~~Fi~~~~L~~~----~~gfl~dD~l~ie~~V~  193 (201)
                      ++. +......++|+   .+|||.+||++++|++|    ++|||+||+|+|+|.|+
T Consensus        79 ~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~  134 (134)
T cd03775          79 DPSIQLSNVAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR  134 (134)
T ss_pred             CCccceEccceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence            654 34445568887   78999999999999965    57999999999999884

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.

>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

Probab=99.96  E-value=1.6e-28  Score=183.59  Aligned_cols=127  Identities=25%  Similarity=0.465  Sum_probs=107.3

Q ss_pred             cCccEEEEEEccccccc---CceEeeCeEEEcCe---EEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCCCceEEEEEEE
Q 037079           66 ASIYKHVWKIENFSKLE---AKRHESEVFIVRDQ---KWKIQLHPKGIKSGTGSHVSMSLALVDSSTITPGFKIYVHFTL  139 (201)
Q Consensus        66 ~~~~~~~w~I~nfS~l~---~~~~~S~~f~~gg~---~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~~~~w~~~~~f~l  139 (201)
                      +...+|+|+|+|||.++   ++.+.|++|.+||+   +|+|++||+|...+..+|+||||++.+..    .+++.|+|+|
T Consensus         2 ~~~~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~~iSlyL~l~~~~----~~~v~a~f~~   77 (139)
T cd03774           2 VVKFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCP----KSEVRAKFKF   77 (139)
T ss_pred             ceEEEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCCeEEEEEEEccCC----CCcEEEEEEE
Confidence            34578999999999874   67999999999984   99999999998766678999999997532    4679999999


Q ss_pred             EEEcCCCCeeEE--eeeceeec--cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEEEe
Q 037079          140 RIRDQVRGKHKE--ANTSIWFR--SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLG  196 (201)
Q Consensus       140 ~l~n~~~~~~~~--~~~~~~F~--~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v~~  196 (201)
                      +|+||.+.....  ....+.|.  .+|||.+||++++|+++.+|||+||+|+|+|+|+|++
T Consensus        78 ~l~n~~~~~~~~~~~~~~~~f~~~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~  138 (139)
T cd03774          78 SILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ  138 (139)
T ss_pred             EEEecCCCeeeeecccCcEeCCCCCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence            999999765321  22346666  7899999999999987778999999999999999986

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta

>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins

Probab=99.95  E-value=7.6e-28  Score=178.25  Aligned_cols=122  Identities=25%  Similarity=0.397  Sum_probs=104.3

Q ss_pred             cCccEEEEEEccccccc--CceEeeCeEEEcCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCCCceEEEEEEEEEEc
Q 037079           66 ASIYKHVWKIENFSKLE--AKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTITPGFKIYVHFTLRIRD  143 (201)
Q Consensus        66 ~~~~~~~w~I~nfS~l~--~~~~~S~~f~~gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~~~~w~~~~~f~l~l~n  143 (201)
                      +...+++|+|+|||.++  ++.+.|++|.+||++|+|++||+|...+.++|||+||++.++.    .|.+.++|+|+|+|
T Consensus         2 ~~~~~~~~~I~~fS~~~~~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~~----~~~~~~~~~l~lln   77 (132)
T cd03773           2 PPYDSATFTLENFSTLRQSADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSGL----GEASKYEYRVEMVH   77 (132)
T ss_pred             CCCcccEEEECChhhhhcCCcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecCC----CCceeEEEEEEEEc
Confidence            45678999999999985  5789999999999999999999998876678999999987642    36788999999999


Q ss_pred             CC-CCeeEEeeeceeec--cCCCccceeechhhhcCCCCeEeC--CEEEEEEEEE
Q 037079          144 QV-RGKHKEANTSIWFR--SSWGWPRFAELSYLNEAGNGFLVN--DGCIVEAEVS  193 (201)
Q Consensus       144 ~~-~~~~~~~~~~~~F~--~~~G~~~Fi~~~~L~~~~~gfl~d--D~l~ie~~V~  193 (201)
                      |. +..+......+.|.  .+|||.+||++++|++  +|||+|  |+|+|+|.|+
T Consensus        78 q~~~~~~~~~~~~~~f~~~~~wG~~~Fi~~~~L~~--~gfl~~~~D~l~i~~~v~  130 (132)
T cd03773          78 QANPTKNIKREFASDFEVGECWGYNRFFRLDLLIN--EGYLLPENDTLILRFSVR  130 (132)
T ss_pred             CCCCccceEEeccccccCCCCcCHHHhccHHHHhh--CCCcCCCCCEEEEEEEEe
Confidence            95 33344455567787  7799999999999986  799999  9999999986

Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i

>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems

Probab=99.94  E-value=1.2e-26  Score=175.30  Aligned_cols=123  Identities=24%  Similarity=0.374  Sum_probs=101.1

Q ss_pred             cEEEEEEccccccc-------CceEeeCeEEEc--CeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCC-CCCceEEEEEE
Q 037079           69 YKHVWKIENFSKLE-------AKRHESEVFIVR--DQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTI-TPGFKIYVHFT  138 (201)
Q Consensus        69 ~~~~w~I~nfS~l~-------~~~~~S~~f~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~-~~~w~~~~~f~  138 (201)
                      ++|+|+|+|||.++       ++.++|++|.+|  ||+|+|++||+|...+.++||||||++.+++.. ...|++.++|+
T Consensus         1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~   80 (149)
T cd00270           1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGKIT   80 (149)
T ss_pred             CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccceEE
Confidence            57999999999974       358999999999  999999999999876667899999999876432 45799999999


Q ss_pred             EEEEcCCCC---eeEEeee-----ceee-------c-cCCCccceeechhhhcCCCCeEeCCEEEEEEEEE
Q 037079          139 LRIRDQVRG---KHKEANT-----SIWF-------R-SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVS  193 (201)
Q Consensus       139 l~l~n~~~~---~~~~~~~-----~~~F-------~-~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~  193 (201)
                      |+|+||.++   ++.....     .+.|       . .+|||.+||++++|++  .|||+||+|+|+|+|.
T Consensus        81 ~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~v~  149 (149)
T cd00270          81 LTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLES--RGYVKDDTLFIKVEVD  149 (149)
T ss_pred             EEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhcc--CCCEeCCEEEEEEEEC
Confidence            999999874   2322111     1223       2 6799999999999986  5999999999999983

There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter

>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.93  E-value=1.9e-25  Score=168.24  Aligned_cols=124  Identities=23%  Similarity=0.308  Sum_probs=101.8

Q ss_pred             cEEEEEEccccccc-----Cc--eEeeCeE--EEcCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCC-CCCceEEEEEE
Q 037079           69 YKHVWKIENFSKLE-----AK--RHESEVF--IVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTI-TPGFKIYVHFT  138 (201)
Q Consensus        69 ~~~~w~I~nfS~l~-----~~--~~~S~~f--~~gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~-~~~w~~~~~f~  138 (201)
                      |.|.|+|.+||.++     ++  .+.|++|  .++||+|+|++||+|.+.+.++|+||||++++++-. ...|++.++++
T Consensus         1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~t   80 (148)
T cd03780           1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVT   80 (148)
T ss_pred             CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCccccccCcceEEEEE
Confidence            57999999999985     44  7999999  899999999999999998788999999999875321 24699999999


Q ss_pred             EEEEcCCCCe-eE--Eee---eceeec-------cCCCccceeechhhhcCCCCeEeCCEEEEEEEE
Q 037079          139 LRIRDQVRGK-HK--EAN---TSIWFR-------SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEV  192 (201)
Q Consensus       139 l~l~n~~~~~-~~--~~~---~~~~F~-------~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V  192 (201)
                      |+|++|.+.. ++  +..   ..+.|.       ..||+++||++++|+.++.+||.||+++|+|.|
T Consensus        81 fsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v  147 (148)
T cd03780          81 LMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV  147 (148)
T ss_pred             EEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence            9999998543 21  111   124564       369999999999998644599999999999987

TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive

>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2

Probab=99.93  E-value=1.1e-25  Score=169.95  Aligned_cols=123  Identities=24%  Similarity=0.320  Sum_probs=99.4

Q ss_pred             cEEEEEEccccccc-----Cc--eEeeCeEEE--cCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCC-CCCCceEEEEEE
Q 037079           69 YKHVWKIENFSKLE-----AK--RHESEVFIV--RDQKWKIQLHPKGIKSGTGSHVSMSLALVDSST-ITPGFKIYVHFT  138 (201)
Q Consensus        69 ~~~~w~I~nfS~l~-----~~--~~~S~~f~~--gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~-~~~~w~~~~~f~  138 (201)
                      ++|+|+|.|||.++     ++  .+.|++|.+  |||+|+|++||+|...+..+|||+||++++++. ....|++.++++
T Consensus         1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~~   80 (147)
T cd03776           1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHLMQGENDSHLDWPFQGTIT   80 (147)
T ss_pred             CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCcccCCcccceeE
Confidence            57999999999754     33  488999985  799999999999998777789999999987543 234699999999


Q ss_pred             EEEEcCCCCe-eEEe-----eeceeec--------cCCCccceeechhhhcCCCCeEeCCEEEEEEEEE
Q 037079          139 LRIRDQVRGK-HKEA-----NTSIWFR--------SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVS  193 (201)
Q Consensus       139 l~l~n~~~~~-~~~~-----~~~~~F~--------~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~  193 (201)
                      |+|+||.++. +...     .....|.        .+|||.+||++++|+.  .+||+||+|+|+|+|.
T Consensus        81 ~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~I~c~V~  147 (147)
T cd03776          81 LTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLLQ--RGFVKNDTLLIKIEVN  147 (147)
T ss_pred             EEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhhh--CCCccCCEEEEEEEEC
Confidence            9999998632 2211     1123342        4799999999999986  6899999999999984

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp

>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.93  E-value=3.3e-25  Score=168.40  Aligned_cols=126  Identities=20%  Similarity=0.250  Sum_probs=106.5

Q ss_pred             cCccEEEEEEccccccc-----C--ceEeeCeEEE--cCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCC-CCceEEE
Q 037079           66 ASIYKHVWKIENFSKLE-----A--KRHESEVFIV--RDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTIT-PGFKIYV  135 (201)
Q Consensus        66 ~~~~~~~w~I~nfS~l~-----~--~~~~S~~f~~--gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~~-~~w~~~~  135 (201)
                      ...++|+|+|+|||++.     +  ..++||+|+.  +||+|+|++||+|++.+++.|||||+++++++..+ ..|++..
T Consensus        16 ~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~~LSly~~l~~Ge~D~~L~WPf~~   95 (164)
T cd03778          16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ   95 (164)
T ss_pred             ccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEecCCcCcccCCceee
Confidence            45799999999999876     2  3799999985  68999999999999988889999999999987665 7899999


Q ss_pred             EEEEEEEcCCCCeeEEeee--------ceeec----cCCCccceeechhhhcCCCCeEeCCEEEEEEEE
Q 037079          136 HFTLRIRDQVRGKHKEANT--------SIWFR----SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEV  192 (201)
Q Consensus       136 ~f~l~l~n~~~~~~~~~~~--------~~~F~----~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V  192 (201)
                      +++|+|+||.+.+|+....        -+++.    .+||+++|+++++|+.+ .|||+||+|.|+|.|
T Consensus        96 ~itl~llDQ~~r~hi~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~-~~Yv~dDtlfIk~~V  163 (164)
T cd03778          96 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAK-NSYVRDDAIFIKAIV  163 (164)
T ss_pred             EEEEEEECCCCCCcceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHcccc-CCcccCCeEEEEEEE
Confidence            9999999998766654322        12232    57999999999999864 699999999999987

TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z

>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1

Probab=99.93  E-value=4.8e-25  Score=167.58  Aligned_cols=123  Identities=22%  Similarity=0.339  Sum_probs=100.3

Q ss_pred             cEEEEEEccccccc-------CceEeeCeEEEc--CeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCC-CCceEEEEEE
Q 037079           69 YKHVWKIENFSKLE-------AKRHESEVFIVR--DQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTIT-PGFKIYVHFT  138 (201)
Q Consensus        69 ~~~~w~I~nfS~l~-------~~~~~S~~f~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~~-~~w~~~~~f~  138 (201)
                      ++|.|+|.|||.++       ++.+.|++|.+|  ||+|+|++||+|...+.++|+|+||++++++..+ ..|++.++++
T Consensus         1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~~   80 (154)
T cd03781           1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSHRIT   80 (154)
T ss_pred             CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCCCCCEEEEEEEEecCCcccccCCceeeEEE
Confidence            57999999999875       258999999999  9999999999999887789999999998854322 4799999999


Q ss_pred             EEEEcCCCC--e---eEEee-----eceeec-----------cCCCccceeechhhhcCCCCeEeCCEEEEEEEEE
Q 037079          139 LRIRDQVRG--K---HKEAN-----TSIWFR-----------SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVS  193 (201)
Q Consensus       139 l~l~n~~~~--~---~~~~~-----~~~~F~-----------~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~  193 (201)
                      |+|++|.++  .   +....     ....|.           .+||+.+||++++|+.  ++||+||+|+|+|+|.
T Consensus        81 ~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~Irc~v~  154 (154)
T cd03781          81 FTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLKK--RNYIKDDAIFLRASVE  154 (154)
T ss_pred             EEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHhh--CCcccCCEEEEEEEeC
Confidence            999999864  1   22111     012231           4699999999999986  7899999999999883

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR

>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.93  E-value=6e-25  Score=165.00  Aligned_cols=124  Identities=21%  Similarity=0.292  Sum_probs=100.1

Q ss_pred             cEEEEEEccccccc-----C--ceEeeCeEEEc--CeEEEEEEEeCCCCCCCCCEEEEEEEEccCC-CCCCCceEEEEEE
Q 037079           69 YKHVWKIENFSKLE-----A--KRHESEVFIVR--DQKWKIQLHPKGIKSGTGSHVSMSLALVDSS-TITPGFKIYVHFT  138 (201)
Q Consensus        69 ~~~~w~I~nfS~l~-----~--~~~~S~~f~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~-~~~~~w~~~~~f~  138 (201)
                      |.+.|+|+||+++.     +  ..++||+|+.+  ||+|+|++||+|.+.+.++|+||||++++++ +....|++.++++
T Consensus         1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~t   80 (147)
T cd03779           1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGTHISLFFVIMKGEYDALLPWPFRHKVT   80 (147)
T ss_pred             CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCcceEEEEE
Confidence            57999999999754     2  37999999864  9999999999999987789999999998753 1233699999999


Q ss_pred             EEEEcCCCCeeE--Eeee---ceeec-------cCCCccceeechhhhcCCCCeEeCCEEEEEEEE
Q 037079          139 LRIRDQVRGKHK--EANT---SIWFR-------SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEV  192 (201)
Q Consensus       139 l~l~n~~~~~~~--~~~~---~~~F~-------~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V  192 (201)
                      |+|++|.+..+.  ....   .+.|.       ..||+++||++++|+....+||.||+++|+|+|
T Consensus        81 fsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V  146 (147)
T cd03779          81 FMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVV  146 (147)
T ss_pred             EEEECCCCCCCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence            999999864432  1111   24563       479999999999998633489999999999998

TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat

>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

Probab=99.93  E-value=1.7e-24  Score=156.97  Aligned_cols=122  Identities=34%  Similarity=0.569  Sum_probs=103.0

Q ss_pred             cEEEEEEcccccccCceEeeCeEEEcCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCCCceEEEEEEEEEEcCCCCe
Q 037079           69 YKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTITPGFKIYVHFTLRIRDQVRGK  148 (201)
Q Consensus        69 ~~~~w~I~nfS~l~~~~~~S~~f~~gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~~~~w~~~~~f~l~l~n~~~~~  148 (201)
                      ++|+|+|.+|+...++.+.|+.|.++|++|+|.+||+|... ..++|||||+|.+.......|++.++++|+|++|++++
T Consensus         1 ~~~~~~i~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~~~~~-~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   79 (126)
T cd00121           1 GKHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGE-SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNGGK   79 (126)
T ss_pred             CEEEEEECCCCCCCCcEEECCCEEEcCEeEEEEEEcCCCCC-CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCCCc
Confidence            36999999999955789999999999999999999999765 46899999999876544457999999999999999555


Q ss_pred             eEEeeeceee--c--cCCCccceeechhhhcCCCCeEeCCEEEEEEEEE
Q 037079          149 HKEANTSIWF--R--SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVS  193 (201)
Q Consensus       149 ~~~~~~~~~F--~--~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~  193 (201)
                      +......+.|  .  .+|||.+||++++|++  .++++||+|+|+|+|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~--~~~~~~d~l~i~~~v~  126 (126)
T cd00121          80 SLSKSFTHVFFSEKGSGWGFPKFISWDDLED--SYYLVDDSLTIEVEVK  126 (126)
T ss_pred             cceEeccCCcCCCCCCCCChHHeeEHHHhcc--CCcEECCEEEEEEEEC
Confidence            5544445555  3  8999999999999996  3449999999999984

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma

>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.93  E-value=1.3e-24  Score=169.36  Aligned_cols=126  Identities=20%  Similarity=0.294  Sum_probs=103.6

Q ss_pred             cCccEEEEEEccccccc-----Cc--eEeeCeEEEc--CeEEEEEEEeCCCCCCCCCEEEEEEEEccCC-CCCCCceEEE
Q 037079           66 ASIYKHVWKIENFSKLE-----AK--RHESEVFIVR--DQKWKIQLHPKGIKSGTGSHVSMSLALVDSS-TITPGFKIYV  135 (201)
Q Consensus        66 ~~~~~~~w~I~nfS~l~-----~~--~~~S~~f~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~-~~~~~w~~~~  135 (201)
                      ...|.|.|+|.|||..+     ++  .+.|++|++|  ||+|+|++||+|.+.++++|+|+||++++++ +....|++.+
T Consensus        36 ~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~~iSvyl~L~~ge~D~~L~WP~~~  115 (186)
T cd03777          36 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ  115 (186)
T ss_pred             ccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCCceeE
Confidence            45799999999999875     34  7999999999  9999999999999987789999999998763 2234699999


Q ss_pred             EEEEEEEcCCCCe-eEE-----eeeceeec-------cCCCccceeechhhhcCCCCeEeCCEEEEEEEEE
Q 037079          136 HFTLRIRDQVRGK-HKE-----ANTSIWFR-------SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVS  193 (201)
Q Consensus       136 ~f~l~l~n~~~~~-~~~-----~~~~~~F~-------~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~  193 (201)
                      +++|+|++|.+.. +..     ......|.       .+||+++||++++|+.  ++||+||+++|+|.|.
T Consensus       116 ~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~--~~ylkdD~l~Irv~v~  184 (186)
T cd03777         116 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVD  184 (186)
T ss_pred             EEEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhcc--CCcEeCCEEEEEEEEe
Confidence            9999999997521 211     11124453       3699999999999986  7899999999999986

TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al

>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces

Probab=99.92  E-value=7.5e-25  Score=167.45  Aligned_cols=123  Identities=21%  Similarity=0.364  Sum_probs=98.3

Q ss_pred             ccEEEEEEccccccc-----CceEeeCeE-EEcCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCC-CCCCce-EEEEEEE
Q 037079           68 IYKHVWKIENFSKLE-----AKRHESEVF-IVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSST-ITPGFK-IYVHFTL  139 (201)
Q Consensus        68 ~~~~~w~I~nfS~l~-----~~~~~S~~f-~~gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~-~~~~w~-~~~~f~l  139 (201)
                      +++|+|+|.|||.++     ++.++|++| .+|||+|+|++||+|... .++||||||++++++. ....|+ +.++++|
T Consensus         1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~-~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t~   79 (167)
T cd03771           1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTES-YPGYTGLYFHLCSGENDDVLEWPCPNRQATM   79 (167)
T ss_pred             CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCC-CCCcceEEEEEecCCccccccCcceeEEEEE
Confidence            468999999999985     458999998 899999999999999988 7899999999987543 245799 5899999


Q ss_pred             EEEcCCCC----eeEEe----e----e----ceee-------------------c-cCCCccceeechhhhcCCCCeEeC
Q 037079          140 RIRDQVRG----KHKEA----N----T----SIWF-------------------R-SSWGWPRFAELSYLNEAGNGFLVN  183 (201)
Q Consensus       140 ~l~n~~~~----~~~~~----~----~----~~~F-------------------~-~~~G~~~Fi~~~~L~~~~~gfl~d  183 (201)
                      +|++|...    .+...    .    .    ...|                   . .+|||++||++++|+.  .+||+|
T Consensus        80 ~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~--r~ylk~  157 (167)
T cd03771          80 TLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRR--RDFLKG  157 (167)
T ss_pred             EEECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhcc--CCCCcC
Confidence            99999741    12111    0    0    0001                   1 3799999999999997  679999


Q ss_pred             CEEEEEEEEE
Q 037079          184 DGCIVEAEVS  193 (201)
Q Consensus       184 D~l~ie~~V~  193 (201)
                      |+|.|++++.
T Consensus       158 dtl~i~~~~~  167 (167)
T cd03771         158 DDLIILLDFE  167 (167)
T ss_pred             CEEEEEEEeC
Confidence            9999999873

They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co

>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []

Probab=99.91  E-value=8.2e-24  Score=152.90  Aligned_cols=114  Identities=32%  Similarity=0.498  Sum_probs=95.1

Q ss_pred             Eccccccc-C-ceEeeCeEEEcCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCC-CCceEEEEEEEEEEcCCCCeeEE
Q 037079           75 IENFSKLE-A-KRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTIT-PGFKIYVHFTLRIRDQVRGKHKE  151 (201)
Q Consensus        75 I~nfS~l~-~-~~~~S~~f~~gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~~-~~w~~~~~f~l~l~n~~~~~~~~  151 (201)
                      |+|||+++ + ..+.|+.|.++|++|+|.+||+|+    +++||+||+|..++... ..|++.++++++|+++.++....
T Consensus         1 i~nfs~l~~~~~~~~s~~~~~~g~~W~l~~~~~~~----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~   76 (119)
T PF00917_consen    1 IKNFSKLKEGEEYSSSFVFSHGGYPWRLKVYPKGN----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSISK   76 (119)
T ss_dssp             ETTGGGHHTSEEEEEEEESSTTSEEEEEEEETTES----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEEEE
T ss_pred             CcccceEeCCCcEECCCeEEECCEEEEEEEEeCCC----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCccee
Confidence            78999997 3 345558889999999999999986    47999999999875443 58999999999999999886322


Q ss_pred             eeeceeec--cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEE
Q 037079          152 ANTSIWFR--SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSV  194 (201)
Q Consensus       152 ~~~~~~F~--~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v  194 (201)
                      ....+.|.  .+|||.+||++++|+++  .|++||+|+|+|+|+|
T Consensus        77 ~~~~~~F~~~~~~g~~~fi~~~~l~~~--~fl~dd~l~ie~~v~I  119 (119)
T PF00917_consen   77 RIKSHSFNNPSSWGWSSFISWEDLEDP--YFLVDDSLTIEVEVKI  119 (119)
T ss_dssp             EEECEEECTTSEEEEEEEEEHHHHTTC--TTSBTTEEEEEEEEEE
T ss_pred             eeeeeEEeeecccchhheeEHHHhCcc--CCeECCEEEEEEEEEC
Confidence            22258888  78999999999999974  3899999999999986

Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....

>smart00061 MATH meprin and TRAF homology

Probab=99.81  E-value=3.4e-19  Score=123.54  Aligned_cols=91  Identities=21%  Similarity=0.308  Sum_probs=78.3

Q ss_pred             EEEEEccccccc-CceEeeCeEEEcCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCCCceEEEEEEEEEEcCCCCee
Q 037079           71 HVWKIENFSKLE-AKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTITPGFKIYVHFTLRIRDQVRGKH  149 (201)
Q Consensus        71 ~~w~I~nfS~l~-~~~~~S~~f~~gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~~~~w~~~~~f~l~l~n~~~~~~  149 (201)
                      ++|+|+||+.+. ++.+.|++|.++|++|+|.+||+      ++|||+||.|.+....+..|++.|+++++|++|++..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~S~~f~~~g~~W~i~~~p~------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~~~~   75 (95)
T smart00061        2 LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRK------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNGKSL   75 (95)
T ss_pred             ceeEEEchhhcccCceEeCChhEEcCceeEEEEEEc------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCCCEE
Confidence            579999999985 77899999999999999999999      37999999998765545579999999999999998655


Q ss_pred             EEeeeceeec--cCCCcccee
Q 037079          150 KEANTSIWFR--SSWGWPRFA  168 (201)
Q Consensus       150 ~~~~~~~~F~--~~~G~~~Fi  168 (201)
                       .+...+.|.  .+|||.+||
T Consensus        76 -~~~~~~~F~~~~~~G~~~fi   95 (95)
T smart00061       76 -SKKDKHVFEKPSGWGFSKFI   95 (95)
T ss_pred             -eeeeeEEEcCCCccceeeEC
Confidence             344567787  789999886

>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.81  E-value=2e-19  Score=136.39  Aligned_cols=123  Identities=20%  Similarity=0.331  Sum_probs=97.1

Q ss_pred             ccEEEEEEccccccc-----CceEeeCeEEE-cCeEEEEEEEeCCCCC-CCCCEEEEEEEEccCCCC-CCCceE-EEEEE
Q 037079           68 IYKHVWKIENFSKLE-----AKRHESEVFIV-RDQKWKIQLHPKGIKS-GTGSHVSMSLALVDSSTI-TPGFKI-YVHFT  138 (201)
Q Consensus        68 ~~~~~w~I~nfS~l~-----~~~~~S~~f~~-gg~~W~l~vyP~G~~~-~~~~~lSlyL~~~~~~~~-~~~w~~-~~~f~  138 (201)
                      ++.+.|+|.||+++.     +..++||+|+. .||+.+|++||+|++. +++.|+|||++++.++.. ...|++ .-+++
T Consensus         1 cp~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~it   80 (167)
T cd03783           1 CPNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAI   80 (167)
T ss_pred             CCceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEE
Confidence            357899999999865     35799999987 5999999999999874 567899999999987543 457995 56999


Q ss_pred             EEEEcCCCC----eeEEe--------eec-----eeec-----------------cCCCccceeechhhhcCCCCeEeCC
Q 037079          139 LRIRDQVRG----KHKEA--------NTS-----IWFR-----------------SSWGWPRFAELSYLNEAGNGFLVND  184 (201)
Q Consensus       139 l~l~n~~~~----~~~~~--------~~~-----~~F~-----------------~~~G~~~Fi~~~~L~~~~~gfl~dD  184 (201)
                      |.|++|++.    .+.+.        ...     ..|.                 .++||++||++++|+.  .+||+||
T Consensus        81 l~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~--r~yikdD  158 (167)
T cd03783          81 ITVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRR--RSFLKND  158 (167)
T ss_pred             EEEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhh--CCcccCC
Confidence            999999741    12210        000     0122                 4899999999999996  8999999


Q ss_pred             EEEEEEEE
Q 037079          185 GCIVEAEV  192 (201)
Q Consensus       185 ~l~ie~~V  192 (201)
                      +|.|.+++
T Consensus       159 tlfI~~~~  166 (167)
T cd03783         159 DLIIFVDF  166 (167)
T ss_pred             eEEEEEec
Confidence            99999886

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both

>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.78  E-value=2.4e-18  Score=129.95  Aligned_cols=122  Identities=17%  Similarity=0.251  Sum_probs=98.0

Q ss_pred             ccEEEEEEccccccc-----CceEeeCeEEE-cCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCC-CCCceEE-EEEEE
Q 037079           68 IYKHVWKIENFSKLE-----AKRHESEVFIV-RDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTI-TPGFKIY-VHFTL  139 (201)
Q Consensus        68 ~~~~~w~I~nfS~l~-----~~~~~S~~f~~-gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~-~~~w~~~-~~f~l  139 (201)
                      ++.+.|+|+||+++.     +..++||+|+. .||+.++.+||+|.+.+ ++|||||+++++++.. ...|++. -+++|
T Consensus         1 cp~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~-~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~   79 (167)
T cd03782           1 CPEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDY-PGNLAIYLHLTSGPNDDQLQWPCPWQQATM   79 (167)
T ss_pred             CCcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCC-CCEEEEEEEEeccCCCccccCCCcCCeEEE
Confidence            467999999999875     35899999974 79999999999999876 6899999999987543 4579999 89999


Q ss_pred             EEEcCCC---C-eeEEe--e------ec--eee----------------------ccCCCccceeechhhhcCCCCeEeC
Q 037079          140 RIRDQVR---G-KHKEA--N------TS--IWF----------------------RSSWGWPRFAELSYLNEAGNGFLVN  183 (201)
Q Consensus       140 ~l~n~~~---~-~~~~~--~------~~--~~F----------------------~~~~G~~~Fi~~~~L~~~~~gfl~d  183 (201)
                      .|++|++   . .|.+.  .      ..  ..|                      +.++||+.||++++|+.  ..||+|
T Consensus        80 ~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~--r~yikd  157 (167)
T cd03782          80 MLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRS--RDFIKG  157 (167)
T ss_pred             EEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhh--cCcccC
Confidence            9999974   1 23221  0      01  123                      15799999999999996  789999


Q ss_pred             CEEEEEEEE
Q 037079          184 DGCIVEAEV  192 (201)
Q Consensus       184 D~l~ie~~V  192 (201)
                      |++.|-+++
T Consensus       158 D~ifi~~~~  166 (167)
T cd03782         158 DDVIFLLTM  166 (167)
T ss_pred             CeEEEEEec
Confidence            999998876

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=5.2e-16  Score=138.62  Aligned_cols=128  Identities=25%  Similarity=0.415  Sum_probs=107.7

Q ss_pred             cCccEEEEEEcccccccCceEeeCeEEEcCeEEEEEEEeCCCCCCCCCEEEEEEEEccCC--CCC-CCceEEEEEEEEEE
Q 037079           66 ASIYKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSS--TIT-PGFKIYVHFTLRIR  142 (201)
Q Consensus        66 ~~~~~~~w~I~nfS~l~~~~~~S~~f~~gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~--~~~-~~w~~~~~f~l~l~  142 (201)
                      .....++|+|+++|.+.. ++.||+|.+||+.|+|.++|+|+...   -+||||+....+  ... ..|.|+|+|.+.|-
T Consensus        36 ~~~~sftW~vk~wsel~~-k~~Sp~F~vg~~twki~lfPqG~nq~---~~sVyLe~~pqe~e~~~gk~~~ccaqFaf~Is  111 (1089)
T COG5077          36 LLEMSFTWKVKRWSELAK-KVESPPFSVGGHTWKIILFPQGNNQC---NVSVYLEYEPQELEETGGKYYDCCAQFAFDIS  111 (1089)
T ss_pred             HhhcccceecCChhhhhh-hccCCcccccCeeEEEEEecccCCcc---ccEEEEEeccchhhhhcCcchhhhhheeeecC
Confidence            556789999999999974 78999999999999999999998753   299999986532  112 35999999999999


Q ss_pred             cCCCCe-eEEeeeceeec---cCCCccceeechhhhcCCCC---eEeCCEEEEEEEEEEEee
Q 037079          143 DQVRGK-HKEANTSIWFR---SSWGWPRFAELSYLNEAGNG---FLVNDGCIVEAEVSVLGI  197 (201)
Q Consensus       143 n~~~~~-~~~~~~~~~F~---~~~G~~~Fi~~~~L~~~~~g---fl~dD~l~ie~~V~v~~~  197 (201)
                      |+..+. .....+.|+|+   .+|||.+|+.+..|..|+.|   |+.++++.|.|.|+|++.
T Consensus       112 ~p~~pti~~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkd  173 (1089)
T COG5077         112 NPKYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKD  173 (1089)
T ss_pred             CCCCCchhhhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeC
Confidence            988754 23456789999   89999999999999987765   788999999999999986

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=98.88  E-value=3.7e-08  Score=82.13  Aligned_cols=115  Identities=30%  Similarity=0.571  Sum_probs=94.7

Q ss_pred             EEEEEcccccccCceEeeCeEEEcCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCCCceEEEEEEEEEEcCCCCee-
Q 037079           71 HVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTITPGFKIYVHFTLRIRDQVRGKH-  149 (201)
Q Consensus        71 ~~w~I~nfS~l~~~~~~S~~f~~gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~~~~w~~~~~f~l~l~n~~~~~~-  149 (201)
                      +.|.+.+++... ..++|..|..+|..|++.+||.|+      +++.|+.+....    +|.+.+.+++.+.||...+. 
T Consensus         6 ~~~~~~~~~~~~-l~~ys~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~----~~~~~~~~~l~v~n~~~~~~~   74 (297)
T KOG1987|consen    6 FTWVISNFSSVG-LVIYSNGFVKGGCKWRLSAYPKGN------YLSLTLSVSDSP----GWERYAKLRLTVVNQKSEKYL   74 (297)
T ss_pred             cceeeccCcchh-hhccccceeecCceEEEEEecCCC------EEEEEEEeccCC----CcceeEEEEEEEccCCCccee
Confidence            349999999886 678999999999999999999983      899999887643    79999999999999998744 


Q ss_pred             EEe-eeceeec-----cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEEEe
Q 037079          150 KEA-NTSIWFR-----SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLG  196 (201)
Q Consensus       150 ~~~-~~~~~F~-----~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v~~  196 (201)
                      ... ....+|.     ..||+.+.++...+.+++.||++++.+++-+.+.|.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~  127 (297)
T KOG1987|consen   75 STVEEGFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFE  127 (297)
T ss_pred             eeeeeeEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeeccee
Confidence            332 2333333     7899999999999999889999998888888776654

>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway

Probab=98.72  E-value=1.4e-08  Score=75.53  Aligned_cols=43  Identities=28%  Similarity=0.594  Sum_probs=39.9

Q ss_pred             eeeeeCCCcccccccccccccccCCCCCeEEcCeEEEEEEEEE
Q 037079            5 RRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLV   47 (201)
Q Consensus         5 ~~~f~~~~~~~G~~~f~~~~~~~~~~~gy~~~d~~~~~~~v~~   47 (201)
                      .|+|+.....|||.+||+|++|+|+++|||+||+|+++++|.|
T Consensus        90 ~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~  132 (137)
T cd03772          90 SHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQA  132 (137)
T ss_pred             eeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEe
Confidence            4689888889999999999999999999999999999999983

It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1

>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

Probab=98.55  E-value=7.2e-08  Score=71.41  Aligned_cols=43  Identities=23%  Similarity=0.483  Sum_probs=38.7

Q ss_pred             CceeeeeCCCcccccccccccccccCC----CCCeEEcCeEEEEEEE
Q 037079            3 GKRRRFHGLKLEWGFDQFIPLEEFNDA----SNGYLVDDTCVFGAEV   45 (201)
Q Consensus         3 ~~~~~f~~~~~~~G~~~f~~~~~~~~~----~~gy~~~d~~~~~~~v   45 (201)
                      +..|+|+....+|||.+||++++|++|    ++|||+||+++++|+|
T Consensus        87 ~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~  133 (134)
T cd03775          87 VAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYV  133 (134)
T ss_pred             cceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEE
Confidence            346899988899999999999999966    6899999999999987

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.

>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=2.5e-07  Score=89.35  Aligned_cols=126  Identities=20%  Similarity=0.247  Sum_probs=102.8

Q ss_pred             cEEEEEEcccccccCceEeeCeEEEcCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCCCceEEEEEEEEEEcCCCCe
Q 037079           69 YKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTITPGFKIYVHFTLRIRDQVRGK  148 (201)
Q Consensus        69 ~~~~w~I~nfS~l~~~~~~S~~f~~gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~~~~w~~~~~f~l~l~n~~~~~  148 (201)
                      ...+|...+...+.. ...|+.|..|+.+|++.+.|+++.   ...+++|+.+...... ..|++++++.+++.|..++.
T Consensus        27 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~s~~~~~~~~v~~~~~~~  101 (1093)
T KOG1863|consen   27 QSTTIDGIDDKSLLY-RALSSNFGAGATKWKILIAPKVNS---LQSTRKKLEVMPSQSL-KSWSCGAQAVLRVKNTIDNL  101 (1093)
T ss_pred             ccccccCcCcchhhh-HhcCccccccccceeeeeccccCc---ccceeEEeeeccCCCC-cceEecchhhhccccCCCCc
Confidence            344566666655554 788999999999999999999983   3689999999876655 45999999999999933332


Q ss_pred             -eEEeeeceeec---cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEEEeeec
Q 037079          149 -HKEANTSIWFR---SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLGISK  199 (201)
Q Consensus       149 -~~~~~~~~~F~---~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v~~~t~  199 (201)
                       ...+...|.|.   .+||+.+|+.++++.++..||+.+|++.++++|.+...+.
T Consensus       102 ~~~~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~  156 (1093)
T KOG1863|consen  102 PDPEKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTS  156 (1093)
T ss_pred             hhhhhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCc
Confidence             33456778888   8999999999999999999999999999999999877554

>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

Probab=98.21  E-value=8e-07  Score=66.09  Aligned_cols=43  Identities=37%  Similarity=0.590  Sum_probs=38.2

Q ss_pred             ceeeeeCCCcccccccccccccccCCCCCeEEcCeEEEEEEEEE
Q 037079            4 KRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLV   47 (201)
Q Consensus         4 ~~~~f~~~~~~~G~~~f~~~~~~~~~~~gy~~~d~~~~~~~v~~   47 (201)
                      ..++|+. ..+|||.+||++++|+++.+|||.||+++|+++|.|
T Consensus        94 ~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V  136 (139)
T cd03774          94 RAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSV  136 (139)
T ss_pred             CcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEE
Confidence            3577875 579999999999999999999999999999999983

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta

>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []

Probab=97.93  E-value=6.1e-06  Score=58.90  Aligned_cols=40  Identities=33%  Similarity=0.691  Sum_probs=34.7

Q ss_pred             eeeeeCCCcccccccccccccccCCCCCeEEcCeEEEEEEEEE
Q 037079            5 RRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLV   47 (201)
Q Consensus         5 ~~~f~~~~~~~G~~~f~~~~~~~~~~~gy~~~d~~~~~~~v~~   47 (201)
                      .|+|+.. ..|||.+||+|++|.+|.  |+.||+++|+|+|.|
T Consensus        80 ~~~F~~~-~~~g~~~fi~~~~l~~~~--fl~dd~l~ie~~v~I  119 (119)
T PF00917_consen   80 SHSFNNP-SSWGWSSFISWEDLEDPY--FLVDDSLTIEVEVKI  119 (119)
T ss_dssp             CEEECTT-SEEEEEEEEEHHHHTTCT--TSBTTEEEEEEEEEE
T ss_pred             eeEEeee-cccchhheeEHHHhCccC--CeECCEEEEEEEEEC
Confidence            3677665 799999999999999775  999999999999863

Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.77  E-value=9.5e-07  Score=73.67  Aligned_cols=190  Identities=21%  Similarity=0.254  Sum_probs=120.8

Q ss_pred             ceeeeeCCCcccccccccccccccCCCCCeEEc-CeEEEEEEEEEecccCCccceeEee------eccccCc----cEEE
Q 037079            4 KRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVD-DTCVFGAEVLVKERNKCKGECLSMT------KLTSASI----YKHV   72 (201)
Q Consensus         4 ~~~~f~~~~~~~G~~~f~~~~~~~~~~~gy~~~-d~~~~~~~v~~~~~~~~~~e~~~~~------~~~~~~~----~~~~   72 (201)
                      ...+|......||+.+++|+..+.+++.||+++ +.|.++.....++.  .+.|.....      .+..+..    ..|+
T Consensus        82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~--~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~  159 (297)
T KOG1987|consen   82 SWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAM--GKSDVFKESSKLITLLEEKPEVLEALNGFQ  159 (297)
T ss_pred             EeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeee--cccccchhccccccccccchhhHhhhceEE
Confidence            344555668999999999999999999999999 55555443323333  444433220      0111344    8899


Q ss_pred             EEEcccccccC----ceEeeCeEEEcCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCC--CCCceEEEEEEEEEEcCCC
Q 037079           73 WKIENFSKLEA----KRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTI--TPGFKIYVHFTLRIRDQVR  146 (201)
Q Consensus        73 w~I~nfS~l~~----~~~~S~~f~~gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~--~~~w~~~~~f~l~l~n~~~  146 (201)
                      |.+.+++....    ..+.+..|..++..|++.++|.+....+...++.||...+...+  ...-.+++....+.+|+..
T Consensus       160 ~~~s~~~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~  239 (297)
T KOG1987|consen  160 VLPSQVSSVERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLE  239 (297)
T ss_pred             EeccchHHHHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHH
Confidence            99999998872    36778999999999999999999876656788889887653211  1122234444445566654


Q ss_pred             Ce--eE--Eeeeceeec---cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEEEe
Q 037079          147 GK--HK--EANTSIWFR---SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLG  196 (201)
Q Consensus       147 ~~--~~--~~~~~~~F~---~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v~~  196 (201)
                      .+  +.  .+....+..   ..+ ..++.++.++.....+++.++++.++++...++
T Consensus       240 ~~~~~~~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  295 (297)
T KOG1987|consen  240 KKLNEVKEKKKKDLWYEIRLQEL-EEELKSLKDKCSDLEGLLVKDKAEVEAESEPLS  295 (297)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHH-HHHHHhhhhhhhhHHHHHHhhhhhhhcccCCcC
Confidence            22  21  111111222   222 556777766665556788888888887766554

>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins

Probab=97.46  E-value=6.1e-05  Score=55.25  Aligned_cols=39  Identities=28%  Similarity=0.577  Sum_probs=32.4

Q ss_pred             eeeeeCCCcccccccccccccccCCCCCeEEc--CeEEEEEEEE
Q 037079            5 RRRFHGLKLEWGFDQFIPLEEFNDASNGYLVD--DTCVFGAEVL   46 (201)
Q Consensus         5 ~~~f~~~~~~~G~~~f~~~~~~~~~~~gy~~~--d~~~~~~~v~   46 (201)
                      .|+|.. ..+|||.+||++++|++  +|||.|  |+++|++.|.
T Consensus        90 ~~~f~~-~~~wG~~~Fi~~~~L~~--~gfl~~~~D~l~i~~~v~  130 (132)
T cd03773          90 ASDFEV-GECWGYNRFFRLDLLIN--EGYLLPENDTLILRFSVR  130 (132)
T ss_pred             cccccC-CCCcCHHHhccHHHHhh--CCCcCCCCCEEEEEEEEe
Confidence            467765 46899999999999974  799999  9999887763

Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.24  E-value=0.00022  Score=61.97  Aligned_cols=79  Identities=19%  Similarity=0.246  Sum_probs=68.3

Q ss_pred             cCccEEEEEEccccccc-------CceEeeCeEEE--cCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCC-CCCceEEE
Q 037079           66 ASIYKHVWKIENFSKLE-------AKRHESEVFIV--RDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTI-TPGFKIYV  135 (201)
Q Consensus        66 ~~~~~~~w~I~nfS~l~-------~~~~~S~~f~~--gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~-~~~w~~~~  135 (201)
                      ...+++.|+|.+++..+       ...+.|+.|+.  .||.-+..+|-+|++.+++.++|+|+.+..++.. ...|+..-
T Consensus       277 ~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~~~~~~s~~~~~~~ge~d~~l~wpf~~  356 (391)
T KOG0297|consen  277 SYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGTGKGTHLSLYFVVMRGEYDALLPWPFRQ  356 (391)
T ss_pred             ccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCCCCcceeeeeeeecccCcccccccCCCC
Confidence            45799999999996544       35789999974  8999999999999999889999999999887543 45699999


Q ss_pred             EEEEEEEcC
Q 037079          136 HFTLRIRDQ  144 (201)
Q Consensus       136 ~f~l~l~n~  144 (201)
                      .+++.+++|
T Consensus       357 ~v~~~l~dq  365 (391)
T KOG0297|consen  357 KVTLMLLDQ  365 (391)
T ss_pred             ceEEEEecc
Confidence            999999999

>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

Probab=97.17  E-value=0.00029  Score=50.10  Aligned_cols=38  Identities=37%  Similarity=0.719  Sum_probs=31.6

Q ss_pred             eeee-CCCcccccccccccccccCCCCCeEEcCeEEEEEEE
Q 037079            6 RRFH-GLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEV   45 (201)
Q Consensus         6 ~~f~-~~~~~~G~~~f~~~~~~~~~~~gy~~~d~~~~~~~v   45 (201)
                      +.|+ ....+|||.+||+|++|+++.  ++.||+++|+++|
T Consensus        87 ~~~~~~~~~~~G~~~fi~~~~l~~~~--~~~~d~l~i~~~v  125 (126)
T cd00121          87 HVFFSEKGSGWGFPKFISWDDLEDSY--YLVDDSLTIEVEV  125 (126)
T ss_pred             CCcCCCCCCCCChHHeeEHHHhccCC--cEECCEEEEEEEE
Confidence            3443 667899999999999999653  3999999999987

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=95.15  E-value=0.015  Score=53.93  Aligned_cols=45  Identities=31%  Similarity=0.513  Sum_probs=40.0

Q ss_pred             CCceeeeeCCCcccccccccccccccCCCCCe---EEcCeEEEEEEEE
Q 037079            2 HGKRRRFHGLKLEWGFDQFIPLEEFNDASNGY---LVDDTCVFGAEVL   46 (201)
Q Consensus         2 ~~~~~~f~~~~~~~G~~~f~~~~~~~~~~~gy---~~~d~~~~~~~v~   46 (201)
                      ....|||+...++|||++|+.+..+.-|+.|.   +.++++++.|.|.
T Consensus       122 N~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVR  169 (1089)
T COG5077         122 NKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVR  169 (1089)
T ss_pred             hcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEE
Confidence            35679999999999999999999999887774   7788999999988

>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=94.99  E-value=0.015  Score=57.01  Aligned_cols=48  Identities=17%  Similarity=0.357  Sum_probs=44.5

Q ss_pred             ceeeeeCCCcccccccccccccccCCCCCeEEcCeEEEEEEEE-Eeccc
Q 037079            4 KRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVL-VKERN   51 (201)
Q Consensus         4 ~~~~f~~~~~~~G~~~f~~~~~~~~~~~gy~~~d~~~~~~~v~-~~~~~   51 (201)
                      ..|+|....++||+++|+.++++.+|..||+.+|++.++++|. -+++.
T Consensus       108 ~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~  156 (1093)
T KOG1863|consen  108 IHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTS  156 (1093)
T ss_pred             hhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCc
Confidence            5799999999999999999999999999999999999999999 56653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	201
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	6e-28
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	3e-08
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	2e-25
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	6e-07
1d00_A	168	Tumor necrosis factor receptor associated protein	9e-18
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	2e-17
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	2e-17
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	7e-17
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	2e-16
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	4e-04
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	8e-16
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	2e-04
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	5e-15
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	3e-04

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Length = 155

 Score =  101 bits (254), Expect = 6e-28
 Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 7/130 (5%)

Query: 70  KHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGT-GSHVSMSLALVDSSTIT 128
              + +E FS+L  +   S    VR+  WKI + P+          V   L   ++ + +
Sbjct: 20  TFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQC-NAESDS 77

Query: 129 PGFKIYVHFTLRIRDQVRGK----HKEANTSIWFRSSWGWPRFAELSYLNEAGNGFLVND 184
             +  +    L+I +    +     + ++      + WG+  F   S + +   GF+ +D
Sbjct: 78  TSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDD 137

Query: 185 GCIVEAEVSV 194
               E  V  
Sbjct: 138 KVTFEVFVQA 147

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Length = 155

 Score = 50.2 bits (120), Expect = 3e-08
 Identities = 11/36 (30%), Positives = 15/36 (41%)

Query: 14  EWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLVKE 49
           +WGF  F+   E  D   G++ DD   F   V    
Sbjct: 114 DWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADA 149

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Length = 145

 Score = 95.4 bits (237), Expect = 2e-25
 Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 14/137 (10%)

Query: 69  YKHVWKIENFSKLEA---KRHESEVFIV---RDQKWKIQLHPKGIKSGTGSHVSMSLALV 122
           + ++W I NFS       +  +S  F        KW ++++PKG+   +  ++S+ L LV
Sbjct: 11  FSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLV 70

Query: 123 DSSTITPGFKIYVHFTLRIRDQVRGKHKEANTSIWFRS----SWGWPRFAELSYLNEAGN 178
                 P  ++   F   I +    + K   +   +R      WG+ +F    +L +  N
Sbjct: 71  SC----PKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEAN 126

Query: 179 GFLVNDGCIVEAEVSVL 195
           G L +D   +  EVSV+
Sbjct: 127 GLLPDDKLTLFCEVSVV 143

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Length = 145

 Score = 46.1 bits (109), Expect = 6e-07
 Identities = 15/46 (32%), Positives = 20/46 (43%)

Query: 2   HGKRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLV 47
             +R        +WGF +FI  +   D +NG L DD      EV V
Sbjct: 97  ESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSV 142

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Length = 168

 Score = 75.8 bits (186), Expect = 9e-18
 Identities = 30/150 (20%), Positives = 60/150 (40%), Gaps = 23/150 (15%)

Query: 70  KHVWKIENFSKL-------EAKRHESEVFIVRDQ--KWKIQLHPKGIKSGTGSHVSMSLA 120
             +WKI +F++              S  F       K  ++++  G  +G G+H+S+   
Sbjct: 20  VFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFV 79

Query: 121 LVDSST-ITPGFKIYVHFTLRIRDQVRGKH------KEANTSIWFR------SSWGWPRF 167
           ++         +      TL + DQ   +H       +  +S + R       + G P F
Sbjct: 80  VMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLF 139

Query: 168 AELSYLNEAGNGFLVNDGCIVEAEVSVLGI 197
             +S + EA N ++ +D   ++A V + G+
Sbjct: 140 CPVSKM-EAKNSYVRDDAIFIKAIVDLTGL 168

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Length = 192

 Score = 75.8 bits (186), Expect = 2e-17
 Identities = 30/150 (20%), Positives = 60/150 (40%), Gaps = 23/150 (15%)

Query: 70  KHVWKIENFSKL-------EAKRHESEVFIVRDQ--KWKIQLHPKGIKSGTGSHVSMSLA 120
             +WKI +F++              S  F       K  ++++  G  +G G+H+S+   
Sbjct: 44  VFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFV 103

Query: 121 LVDSST-ITPGFKIYVHFTLRIRDQVRGKH------KEANTSIWFR------SSWGWPRF 167
           ++         +      TL + DQ   +H       +  +S + R       + G P F
Sbjct: 104 VMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLF 163

Query: 168 AELSYLNEAGNGFLVNDGCIVEAEVSVLGI 197
             +S + EA N ++ +D   ++A V + G+
Sbjct: 164 CPVSKM-EAKNSYVRDDAIFIKAIVDLTGL 192

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312

 Score = 77.2 bits (190), Expect = 2e-17
 Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 14/136 (10%)

Query: 69  YKHVWKIENFSKLEAKRHE---SEVFIV---RDQKWKIQLHPKGIKSGTGSHVSMSLALV 122
           + ++W I NFS    +  E   S  F        KW ++++PKG+   +  ++S+ L LV
Sbjct: 7   FSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLV 66

Query: 123 DSSTITPGFKIYVHFTLRIRDQVRGKHKEANTSIWFR----SSWGWPRFAELSYLNEAGN 178
                 P  ++   F   I +    + K   +   +R      WG+ +F    +L +  N
Sbjct: 67  S----CPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRGFLLDEAN 122

Query: 179 GFLVNDGCIVEAEVSV 194
           G L +D   +  EVSV
Sbjct: 123 GLLPDDKLTLFCEVSV 138

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522

 Score = 76.9 bits (189), Expect = 7e-17
 Identities = 25/130 (19%), Positives = 47/130 (36%), Gaps = 7/130 (5%)

Query: 70  KHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTG-SHVSMSLALVDSSTIT 128
              + +E FS+L  +   S    VR+  WKI + P+          V   L   ++ + +
Sbjct: 32  TFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQC-NAESDS 89

Query: 129 PGFKIYVHFTLRIRDQVRGKHKEANTSIW-FRSS---WGWPRFAELSYLNEAGNGFLVND 184
             +  +    L+I +    +   +      F      WG+  F   S + +   GF+ +D
Sbjct: 90  TSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDD 149

Query: 185 GCIVEAEVSV 194
               E  V  
Sbjct: 150 KVTFEVFVQA 159

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Length = 228

 Score = 74.0 bits (181), Expect = 2e-16
 Identities = 25/153 (16%), Positives = 54/153 (35%), Gaps = 25/153 (16%)

Query: 70  KHVWKIENFSKL-------EAKRHESEVFIVRDQ--KWKIQLHPKGIKSGTGSHVSMSLA 120
             +WKI ++ +        +     S+ F       K   +++  G   G G+H+S+   
Sbjct: 77  VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFV 136

Query: 121 LVDS---STITPGFKIYVHFTLRIRDQVRGKHKEA-----NTSIWFR------SSWGWPR 166
           ++     + +   FK  V   L  +   R    +A     N+S + +       + G P 
Sbjct: 137 IMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPV 196

Query: 167 FAELSYLNEAGNGFLVNDGCIVEAEVSVLGISK 199
           F   + L      ++ +D   ++  V    +  
Sbjct: 197 FVAQTVLEN--GTYIKDDTIFIKVIVDTSDLPD 227

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Length = 228

 Score = 38.9 bits (90), Expect = 4e-04
 Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 2/44 (4%)

Query: 2   HGKRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEV 45
              ++    + +  G   F+        +  Y+ DDT      V
Sbjct: 179 SSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIV 220

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Length = 192

 Score = 71.2 bits (174), Expect = 8e-16
 Identities = 25/153 (16%), Positives = 54/153 (35%), Gaps = 25/153 (16%)

Query: 70  KHVWKIENFSKL-------EAKRHESEVFIVRDQ--KWKIQLHPKGIKSGTGSHVSMSLA 120
             +WKI ++ +        +     S+ F       K   +++  G   G G+H+S+   
Sbjct: 41  VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFV 100

Query: 121 LVDS---STITPGFKIYVHFTLRIRDQVRGKHKEA-----NTSIWFR------SSWGWPR 166
           ++     + +   FK  V   L  +   R    +A     N+S + +       + G P 
Sbjct: 101 IMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPV 160

Query: 167 FAELSYLNEAGNGFLVNDGCIVEAEVSVLGISK 199
           F   + L      ++ +D   ++  V    +  
Sbjct: 161 FVAQTVLEN--GTYIKDDTIFIKVIVDTSDLPD 191

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Length = 192

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 2/44 (4%)

Query: 2   HGKRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEV 45
              ++    + +  G   F+        +  Y+ DDT      V
Sbjct: 143 SSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIV 184

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Length = 160

 Score = 68.4 bits (167), Expect = 5e-15
 Identities = 26/152 (17%), Positives = 48/152 (31%), Gaps = 29/152 (19%)

Query: 70  KHVWKIENFSKL-------EAKRHESEVFIVRDQ--KWKIQLHPKGI-KSGTGSHVSMSL 119
            ++WKI NF          +     S  F       K  ++LH +        +++S+ +
Sbjct: 6   IYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFV 65

Query: 120 ALVDSST-ITPGFKIYVHFTLRIRDQVRGKHKE---------ANTSIWFR-------SSW 162
             +         +       L I DQ     ++              + R         +
Sbjct: 66  HTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGF 125

Query: 163 GWPRFAELSYLNEAGNGFLVNDGCIVEAEVSV 194
           G+  F  L  L +    F+ +D  +V  EVS 
Sbjct: 126 GYVTFMHLEALRQ--RTFIKDDTLLVRCEVST 155

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Length = 160

 Score = 38.8 bits (90), Expect = 3e-04
 Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 15  WGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLVK 48
           +G+  F+ LE        ++ DDT +   EV  +
Sbjct: 125 FGYVTFMHLEALR--QRTFIKDDTLLVRCEVSTR 156

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	201
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	100.0
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	99.98
4gjh_A	178	TNF receptor-associated factor 5; TRAF domain, imm	99.97
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	99.96
1d00_A	168	Tumor necrosis factor receptor associated protein	99.96
4ghu_A	198	TNF receptor-associated factor 3; alpha/beta, inna	99.95
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	99.95
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	99.95
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.95
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	99.95
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.94
4gwm_A	592	Meprin A subunit beta; mulidomain structure, hydro	99.48
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	98.83
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	98.64
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	98.07
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	98.06
4gwm_A	592	Meprin A subunit beta; mulidomain structure, hydro	83.7

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A

Probab=100.00  E-value=5.8e-33  Score=209.99  Aligned_cols=133  Identities=20%  Similarity=0.275  Sum_probs=113.8

Q ss_pred             cCccEEEEEEcccccccCceEeeCeEEEcCeEEEEEEEeCCCCC-CCCCEEEEEEEEccCCCCCCCceEEEEEEEEEEcC
Q 037079           66 ASIYKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKS-GTGSHVSMSLALVDSSTITPGFKIYVHFTLRIRDQ  144 (201)
Q Consensus        66 ~~~~~~~w~I~nfS~l~~~~~~S~~f~~gg~~W~l~vyP~G~~~-~~~~~lSlyL~~~~~~~~~~~w~~~~~f~l~l~n~  144 (201)
                      ...++|+|+|+|||.++ +.++|++|.+||++|+|++||+|+.. +.++||||||+|... ..+.+|++.|+|+|+|+||
T Consensus        16 ~~~~~~~w~I~nfS~~~-~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~~~l~l~~~   93 (155)
T 2foj_A           16 RSEATFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINY   93 (155)
T ss_dssp             CSEEEEEEEESSGGGCC-SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTT-CCCSSCEEEEEEEEEECCS
T ss_pred             CCCcEEEEEECChhhcC-CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCC-CCCCCCEEEEEEEEEEEcC
Confidence            56789999999999996 78999999999999999999999865 356899999999644 4456799999999999999


Q ss_pred             CCCe-eEEeeeceeec---cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEEEeeecC
Q 037079          145 VRGK-HKEANTSIWFR---SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLGISKA  200 (201)
Q Consensus       145 ~~~~-~~~~~~~~~F~---~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v~~~t~~  200 (201)
                      .++. +..+...++|.   .+|||++||++++|+++++|||+||+|+|+|+|+|.++|..
T Consensus        94 ~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG~  153 (155)
T 2foj_A           94 RDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGV  153 (155)
T ss_dssp             SCGGGCEEEEEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCBSS
T ss_pred             CCCcceEEeccEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCcccc
Confidence            9865 45556678886   68999999999999988899999999999999999888763

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A

Probab=99.98  E-value=2.9e-32  Score=204.08  Aligned_cols=128  Identities=26%  Similarity=0.479  Sum_probs=112.3

Q ss_pred             cCccEEEEEEccccccc---CceEeeCeEEEcCe---EEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCCCceEEEEEEE
Q 037079           66 ASIYKHVWKIENFSKLE---AKRHESEVFIVRDQ---KWKIQLHPKGIKSGTGSHVSMSLALVDSSTITPGFKIYVHFTL  139 (201)
Q Consensus        66 ~~~~~~~w~I~nfS~l~---~~~~~S~~f~~gg~---~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~~~~w~~~~~f~l  139 (201)
                      ...++|+|+|+|||.++   ++.++|++|.+|||   +|+|++||+|+..+.++||||||+|.+.    +.|++.|+|+|
T Consensus         8 ~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~~~~~~lSlyL~l~~~----~~w~v~a~f~l   83 (145)
T 3ivv_A            8 VVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFKF   83 (145)
T ss_dssp             CCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSSGGGTTEEEEEEEEEEC----SSSEEEEEEEE
T ss_pred             EEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCCCCCCCeEEEEEEEcCC----CCCcEEEEEEE
Confidence            67899999999999986   47899999999996   9999999999887667899999999875    36999999999


Q ss_pred             EEEcCCCCeeEE--eeeceeec--cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEEEee
Q 037079          140 RIRDQVRGKHKE--ANTSIWFR--SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLGI  197 (201)
Q Consensus       140 ~l~n~~~~~~~~--~~~~~~F~--~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v~~~  197 (201)
                      +|+||.++.+..  ....++|.  .+|||++||++++|+++++|||+||+|+|+|+|+|+++
T Consensus        84 ~llnq~~~~~~~~~~~~~~~F~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d  145 (145)
T 3ivv_A           84 SILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD  145 (145)
T ss_dssp             EEECTTSCEEEEEECSSCEEEETTCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred             EEEecCCCceeeecccceEEecCCCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence            999999876542  23467787  78999999999999876789999999999999999863

>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}

Probab=99.97  E-value=5.1e-31  Score=203.83  Aligned_cols=132  Identities=21%  Similarity=0.295  Sum_probs=110.9

Q ss_pred             cCccEEEEEEcccccccC-------ceEeeCeEEEc--CeEEEEEEEeCCCCCCCCCEEEEEEEEccCCC-CCCCceEEE
Q 037079           66 ASIYKHVWKIENFSKLEA-------KRHESEVFIVR--DQKWKIQLHPKGIKSGTGSHVSMSLALVDSST-ITPGFKIYV  135 (201)
Q Consensus        66 ~~~~~~~w~I~nfS~l~~-------~~~~S~~f~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~-~~~~w~~~~  135 (201)
                      +..++|+|+|+|||.+++       ..++|++|.+|  ||+|+|++||+|+..+.++||||||+|.+++. ....|++.|
T Consensus        21 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~d~~l~W~v~a  100 (178)
T 4gjh_A           21 CYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQ  100 (178)
T ss_dssp             CSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEBCCTTGGGSCSSCCC
T ss_pred             ccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCCCCCCEEEEEEEEecCCCCcccCCceEE
Confidence            678999999999998863       27999999999  99999999999988766799999999987542 234799999


Q ss_pred             EEEEEEEcCCCCe-eEEee-----eceeec-------cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEEEee
Q 037079          136 HFTLRIRDQVRGK-HKEAN-----TSIWFR-------SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLGI  197 (201)
Q Consensus       136 ~f~l~l~n~~~~~-~~~~~-----~~~~F~-------~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v~~~  197 (201)
                      +|+|+|+||.++. +..+.     ..+.|.       .+|||++||++++|+++++|||+||+|+|+|+|.|.+.
T Consensus       101 ~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~~  175 (178)
T 4gjh_A          101 RVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTDL  175 (178)
T ss_dssp             EEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTTC
T ss_pred             EEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecCC
Confidence            9999999998754 33321     235564       47999999999999988899999999999999977553

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A

Probab=99.96  E-value=3.1e-30  Score=201.64  Aligned_cols=130  Identities=21%  Similarity=0.313  Sum_probs=108.9

Q ss_pred             cCccEEEEEEcccccccC-----c--eEeeCeEEE--cCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCC-CCceEEE
Q 037079           66 ASIYKHVWKIENFSKLEA-----K--RHESEVFIV--RDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTIT-PGFKIYV  135 (201)
Q Consensus        66 ~~~~~~~w~I~nfS~l~~-----~--~~~S~~f~~--gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~~-~~w~~~~  135 (201)
                      ...++|+|+|+|||.+++     +  .++||+|.+  |||+|+|++||+|++.+.++||||||+|.+++..+ ..|++.|
T Consensus        40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~W~~~a  119 (192)
T 1ca9_A           40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ  119 (192)
T ss_dssp             CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred             ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCcCCCceEE
Confidence            578999999999999862     2  599999999  99999999999998876679999999998775433 5799999


Q ss_pred             EEEEEEEcCCCCeeEEeeec-----eeec-------cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEEEe
Q 037079          136 HFTLRIRDQVRGKHKEANTS-----IWFR-------SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLG  196 (201)
Q Consensus       136 ~f~l~l~n~~~~~~~~~~~~-----~~F~-------~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v~~  196 (201)
                      +|+|+|+||.++++.+....     ..|.       .+|||++||++++|++ .+|||+||+|+|+|+|+|.+
T Consensus       120 ~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~~  191 (192)
T 1ca9_A          120 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLTG  191 (192)
T ss_dssp             CEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECCTT
T ss_pred             EEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEecC
Confidence            99999999998765432221     2232       5899999999999995 47999999999999998754

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A

Probab=99.96  E-value=7.9e-30  Score=195.16  Aligned_cols=130  Identities=22%  Similarity=0.318  Sum_probs=107.8

Q ss_pred             cCccEEEEEEccccccc-----Cc--eEeeCeEE--EcCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCC-CCceEEE
Q 037079           66 ASIYKHVWKIENFSKLE-----AK--RHESEVFI--VRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTIT-PGFKIYV  135 (201)
Q Consensus        66 ~~~~~~~w~I~nfS~l~-----~~--~~~S~~f~--~gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~~-~~w~~~~  135 (201)
                      ...++|+|+|+|||.++     ++  .++||+|.  +|||+|+|++||+|+..+.++||||||+|.+++..+ .+|++.|
T Consensus        16 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~w~~~~   95 (168)
T 1d00_A           16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ   95 (168)
T ss_dssp             CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred             ccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCCCCCcEEEEEEEEecCCCCccCCCceEE
Confidence            46899999999999986     23  39999997  799999999999998776679999999998765433 5799999


Q ss_pred             EEEEEEEcCCCCeeEEeee-----ceeec-------cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEEEe
Q 037079          136 HFTLRIRDQVRGKHKEANT-----SIWFR-------SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLG  196 (201)
Q Consensus       136 ~f~l~l~n~~~~~~~~~~~-----~~~F~-------~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v~~  196 (201)
                      +|+|+|+||.+..+.+...     .+.|.       .+|||++||++++|+++ +|||+||+|+|+|+|+|.+
T Consensus        96 ~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~~  167 (168)
T 1d00_A           96 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLTG  167 (168)
T ss_dssp             CEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECCTT
T ss_pred             EEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEecC
Confidence            9999999999876543321     12342       57999999999999974 4999999999999998743

>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.95  E-value=2.1e-29  Score=197.72  Aligned_cols=132  Identities=17%  Similarity=0.209  Sum_probs=109.3

Q ss_pred             cCccEEEEEEcccccccC-------ceEeeCeEEEc--CeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCC-CCCceEEE
Q 037079           66 ASIYKHVWKIENFSKLEA-------KRHESEVFIVR--DQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTI-TPGFKIYV  135 (201)
Q Consensus        66 ~~~~~~~w~I~nfS~l~~-------~~~~S~~f~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~-~~~w~~~~  135 (201)
                      +..++|+|+|+|||.+++       +.++|++|.+|  ||+|+|++||+|++.+.++||||||++.+++.. ...|++.|
T Consensus        37 ~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~~~~~~lSlyL~l~~g~~D~~l~wp~~a  116 (198)
T 4ghu_A           37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ  116 (198)
T ss_dssp             CSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred             ccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCCCCCCCeEEEEEEecCCccCCCCCceEEE
Confidence            578999999999998863       58999999999  999999999999987667999999999876432 34799999


Q ss_pred             EEEEEEEcCCCCe-eEEeee---------ceeec---cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEEEeeec
Q 037079          136 HFTLRIRDQVRGK-HKEANT---------SIWFR---SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLGISK  199 (201)
Q Consensus       136 ~f~l~l~n~~~~~-~~~~~~---------~~~F~---~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v~~~t~  199 (201)
                      +|+|+|+||.+.. +.....         .+.|.   .+|||++||++++|++  +|||+||+|+|+|+|.|+...+
T Consensus       117 ~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~~~  191 (198)
T 4ghu_A          117 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLPD  191 (198)
T ss_dssp             CEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTBEEEEEEECCTTCC-
T ss_pred             EEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhhh--cCCeeCCEEEEEEEEEeccCCC
Confidence            9999999998653 332211         11232   6899999999999996  8999999999999999876544

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A

Probab=99.95  E-value=1.1e-28  Score=187.55  Aligned_cols=130  Identities=22%  Similarity=0.222  Sum_probs=103.5

Q ss_pred             cCccEEEEEEccccccc-----Cc--eEeeCeEEEc--CeEEEEEEEeCCCCCCC-CCEEEEEEEEccCCCC-CCCceEE
Q 037079           66 ASIYKHVWKIENFSKLE-----AK--RHESEVFIVR--DQKWKIQLHPKGIKSGT-GSHVSMSLALVDSSTI-TPGFKIY  134 (201)
Q Consensus        66 ~~~~~~~w~I~nfS~l~-----~~--~~~S~~f~~g--g~~W~l~vyP~G~~~~~-~~~lSlyL~~~~~~~~-~~~w~~~  134 (201)
                      +..++|+|+|+|||.++     ++  .+.|++|.+|  ||+|+|++||+|+..+. ++||||||++++++.. ...|++.
T Consensus         2 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~   81 (160)
T 1lb6_A            2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ   81 (160)
T ss_dssp             CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             ccCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCcee
Confidence            35689999999999986     33  8999999999  99999999999987643 6899999999876432 3469999


Q ss_pred             EEEEEEEEcCCCCe---eEEeee-----ceeec--------cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEEEee
Q 037079          135 VHFTLRIRDQVRGK---HKEANT-----SIWFR--------SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLGI  197 (201)
Q Consensus       135 ~~f~l~l~n~~~~~---~~~~~~-----~~~F~--------~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v~~~  197 (201)
                      |+|+|+|+||.+..   +.+...     ...|.        .+|||++||++++|+.  +|||+||+|+|+|+|.|+.+
T Consensus        82 a~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~~--~~yl~dD~l~I~~~V~v~~~  158 (160)
T 1lb6_A           82 GTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQ--RTFIKDDTLLVRCEVSTRFD  158 (160)
T ss_dssp             SEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGT--SCCCBTTBEEEEEEEEC---
T ss_pred             eeEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhhh--CCCccCCEEEEEEEEEEeec
Confidence            99999999998752   221111     11231        3799999999999995  89999999999999999764

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.95  E-value=4.5e-29  Score=195.12  Aligned_cols=129  Identities=19%  Similarity=0.264  Sum_probs=108.0

Q ss_pred             cCccEEEEEEccccccc-----Cc--eEeeCeEEEc--CeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCC-CCCceEEE
Q 037079           66 ASIYKHVWKIENFSKLE-----AK--RHESEVFIVR--DQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTI-TPGFKIYV  135 (201)
Q Consensus        66 ~~~~~~~w~I~nfS~l~-----~~--~~~S~~f~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~-~~~w~~~~  135 (201)
                      ...++|+|+|+|||.++     ++  .++|++|.+|  ||+|+|++||+|++.+.++|||+||++++++.. ...|++.+
T Consensus        37 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a  116 (192)
T 2gkw_A           37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ  116 (192)
T ss_dssp             CCSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred             ccCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCCCCCCCEEEEEEEEecCCCCccCCCcEEE
Confidence            46799999999999986     33  5999999999  999999999999887667999999999876543 34799999


Q ss_pred             EEEEEEEcCCCCe-eEEeee-----ceeec-------cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEEEe
Q 037079          136 HFTLRIRDQVRGK-HKEANT-----SIWFR-------SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLG  196 (201)
Q Consensus       136 ~f~l~l~n~~~~~-~~~~~~-----~~~F~-------~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v~~  196 (201)
                      +|+|+|+||.+.. +.....     .+.|.       .+|||++||++++|++  +|||+||+|+|+|+|.|.+
T Consensus       117 ~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~--~gyl~dD~l~I~~~V~v~~  188 (192)
T 2gkw_A          117 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSD  188 (192)
T ss_dssp             CEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTEEEEEEEECCTT
T ss_pred             EEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhCc--CCCeeCCEEEEEEEEEcCC
Confidence            9999999999863 433221     14563       5799999999999997  6999999999999997754

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.95  E-value=1.2e-27  Score=199.34  Aligned_cols=128  Identities=25%  Similarity=0.456  Sum_probs=108.0

Q ss_pred             cCccEEEEEEccccccc---CceEeeCeEEEcCe---EEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCCCceEEEEEEE
Q 037079           66 ASIYKHVWKIENFSKLE---AKRHESEVFIVRDQ---KWKIQLHPKGIKSGTGSHVSMSLALVDSSTITPGFKIYVHFTL  139 (201)
Q Consensus        66 ~~~~~~~w~I~nfS~l~---~~~~~S~~f~~gg~---~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~~~~w~~~~~f~l  139 (201)
                      ...++|+|+|+|||.++   ++.+.|++|.+||+   +|+|.+||+|+..+.++|+|+||+|.+.+    .|++.|+|+|
T Consensus         4 ~~~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~~~----~~~v~a~~~~   79 (312)
T 3hqi_A            4 VVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCP----KSEVRAKFKF   79 (312)
T ss_dssp             EEEEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEECC----C-CEEEEEEE
T ss_pred             eEEEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCccCCCcEEEEEEEcCCC----CCcEEEEEEE
Confidence            34689999999999996   67999999999995   99999999998876679999999998653    6999999999


Q ss_pred             EEEcCCCCeeEEe--eeceeec--cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEEEee
Q 037079          140 RIRDQVRGKHKEA--NTSIWFR--SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLGI  197 (201)
Q Consensus       140 ~l~n~~~~~~~~~--~~~~~F~--~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v~~~  197 (201)
                      +|+||+++.....  ...++|.  .+|||++||+|++|+++.+|||+||+|+|+|+|+|++.
T Consensus        80 ~l~~~~~~~~~~~~~~~~~~F~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~  141 (312)
T 3hqi_A           80 SILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQD  141 (312)
T ss_dssp             EEECTTSCEEEEEECSSCEEECTTCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEE
T ss_pred             EEEeCCCCcccccccCCceeCCCCCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEec
Confidence            9999998765432  3567787  78999999999999887789999999999999999953

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A

Probab=99.95  E-value=2.5e-28  Score=195.62  Aligned_cols=131  Identities=18%  Similarity=0.260  Sum_probs=109.3

Q ss_pred             cCccEEEEEEcccccccC-------ceEeeCeEEEc--CeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCC-CCCceEEE
Q 037079           66 ASIYKHVWKIENFSKLEA-------KRHESEVFIVR--DQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTI-TPGFKIYV  135 (201)
Q Consensus        66 ~~~~~~~w~I~nfS~l~~-------~~~~S~~f~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~-~~~w~~~~  135 (201)
                      ...++|+|+|+|||.+++       ..++|++|.+|  ||+|+|++||+|++.+.++|||+||++++++.. ...|++.|
T Consensus        73 ~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~Wp~~a  152 (228)
T 1flk_A           73 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ  152 (228)
T ss_dssp             CSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGGGTTTEEEEEECCBCCTTTTSSCSSCCC
T ss_pred             CcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEecCCccccCCCcEEE
Confidence            478999999999999862       27999999999  999999999999987677999999999876543 34799999


Q ss_pred             EEEEEEEcCCCCe-eEEee-----eceeec-------cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEEEeee
Q 037079          136 HFTLRIRDQVRGK-HKEAN-----TSIWFR-------SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLGIS  198 (201)
Q Consensus       136 ~f~l~l~n~~~~~-~~~~~-----~~~~F~-------~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v~~~t  198 (201)
                      +|+|+|+||.+.. +.+..     ..+.|.       .+|||++||++++|++  +|||+||+|+|+|+|.|.+..
T Consensus       153 ~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~~  226 (228)
T 1flk_A          153 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLP  226 (228)
T ss_dssp             CEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHSS--STTCCSSEEEEEEECCCTTSC
T ss_pred             EEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHcc--CCCccCCEEEEEEEEEccccc
Confidence            9999999999865 33221     123453       5899999999999996  799999999999999886643

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.94  E-value=8.3e-27  Score=206.98  Aligned_cols=131  Identities=21%  Similarity=0.280  Sum_probs=110.2

Q ss_pred             cCccEEEEEEcccccccCceEeeCeEEEcCeEEEEEEEeCCCCCC-CCCEEEEEEEEccCCCCCCCceEEEEEEEEEEcC
Q 037079           66 ASIYKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSG-TGSHVSMSLALVDSSTITPGFKIYVHFTLRIRDQ  144 (201)
Q Consensus        66 ~~~~~~~w~I~nfS~l~~~~~~S~~f~~gg~~W~l~vyP~G~~~~-~~~~lSlyL~~~~~~~~~~~w~~~~~f~l~l~n~  144 (201)
                      ...++|+|+|+|||.+++ .++|++|.+||++|+|.+||+|+..+ .++||||||+|.+. ..+.+|++.|+|+|+|+||
T Consensus        28 ~~~~~~~w~I~nfS~~~~-~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~f~l~l~n~  105 (522)
T 2f1z_A           28 RSEATFQFTVERFSRLSE-SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINY  105 (522)
T ss_dssp             CSEEEEEEEESSCTTCCS-CEECCCEEETTEEEEEEECBC--------CBBCEEEEESTT-CCCSSCBEEEEEEEEECCT
T ss_pred             cCCcEEEEEECChhhcCC-ceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCCceEEEEEEEEEEcC
Confidence            557899999999999976 89999999999999999999997543 56899999999876 4567899999999999999


Q ss_pred             CCCe-eEEeeeceeec---cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEEEeee
Q 037079          145 VRGK-HKEANTSIWFR---SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLGIS  198 (201)
Q Consensus       145 ~~~~-~~~~~~~~~F~---~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v~~~t  198 (201)
                      .++. +..+...++|.   .+|||.+||++++|.++.+|||+||+++|+|+|+|...+
T Consensus       106 ~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~  163 (522)
T 2f1z_A          106 RDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPH  163 (522)
T ss_dssp             TCGGGCEEEECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCB
T ss_pred             CCCccceeccceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeeccccc
Confidence            8764 45566778887   689999999999998777999999999999999996544

>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*

Probab=99.48  E-value=9.9e-14  Score=123.82  Aligned_cols=124  Identities=17%  Similarity=0.288  Sum_probs=98.6

Q ss_pred             cCccEEEEEEccccccc---CceEeeCeEE-EcCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCC-CCCceE-EEEEEE
Q 037079           66 ASIYKHVWKIENFSKLE---AKRHESEVFI-VRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTI-TPGFKI-YVHFTL  139 (201)
Q Consensus        66 ~~~~~~~w~I~nfS~l~---~~~~~S~~f~-~gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~-~~~w~~-~~~f~l  139 (201)
                      ..+..+.|+|.||+++.   +..++||+|+ ..||.++|.+||++     +.|+|||++|..++.. ...|++ .-++++
T Consensus       403 G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~-----~~~~~~~~~l~sG~~D~~L~WP~~~~q~t~  477 (592)
T 4gwm_A          403 TRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH-----VTNAGIYFHLISGANDDQLQWPCPWQQATM  477 (592)
T ss_dssp             SCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS-----SSEEEEEEEEECCTTGGGSCSSCCSEEEEE
T ss_pred             CCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC-----CceEEEEEEEecCCCCCCccCCCCCCEEEE
Confidence            67889999999999986   5689999998 47999999999976     4799999999987543 457999 578999


Q ss_pred             EEEcCCCCe----eEEeee-----------c------------eee-------c-cCCCccceeechhhhcCCCCeEeCC
Q 037079          140 RIRDQVRGK----HKEANT-----------S------------IWF-------R-SSWGWPRFAELSYLNEAGNGFLVND  184 (201)
Q Consensus       140 ~l~n~~~~~----~~~~~~-----------~------------~~F-------~-~~~G~~~Fi~~~~L~~~~~gfl~dD  184 (201)
                      .|++|.+..    +.++..           .            ..|       . .+|||+.||+++.|..  ..||+||
T Consensus       478 ~llDQ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~~--r~fiK~d  555 (592)
T 4gwm_A          478 TLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLKS--RDFIKGD  555 (592)
T ss_dssp             EECCCCSSGGGCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHTS--TTSSBTT
T ss_pred             EEeCCCCChHhcCceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHhh--cCcccCC
Confidence            999998642    211110           0            011       1 5689999999999986  6799999


Q ss_pred             EEEEEEEEEEEe
Q 037079          185 GCIVEAEVSVLG  196 (201)
Q Consensus       185 ~l~ie~~V~v~~  196 (201)
                      .|+|.++|+-+.
T Consensus       556 ~~~i~~~~eD~~  567 (592)
T 4gwm_A          556 DVYILLTVEDIS  567 (592)
T ss_dssp             BEEEEEEEEECG
T ss_pred             eEEEEEEEEeCc
Confidence            999999997654

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A

Probab=98.83  E-value=1.3e-09  Score=81.38  Aligned_cols=47  Identities=26%  Similarity=0.504  Sum_probs=42.4

Q ss_pred             ceeeeeCCCcccccccccccccccCCCCCeEEcCeEEEEEEEE-Eecc
Q 037079            4 KRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVL-VKER   50 (201)
Q Consensus         4 ~~~~f~~~~~~~G~~~f~~~~~~~~~~~gy~~~d~~~~~~~v~-~~~~   50 (201)
                      ..|+|.....+|||.+||+|++|+||++|||+||+++|+|+|. .+|+
T Consensus       104 ~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~t  151 (155)
T 2foj_A          104 ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPH  151 (155)
T ss_dssp             EEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCB
T ss_pred             cEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCcc
Confidence            3688998888999999999999999999999999999999999 4444

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A

Probab=98.64  E-value=4.9e-09  Score=77.41  Aligned_cols=43  Identities=37%  Similarity=0.590  Sum_probs=39.0

Q ss_pred             ceeeeeCCCcccccccccccccccCCCCCeEEcCeEEEEEEEEE
Q 037079            4 KRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLV   47 (201)
Q Consensus         4 ~~~~f~~~~~~~G~~~f~~~~~~~~~~~gy~~~d~~~~~~~v~~   47 (201)
                      ..|+|+. ..+|||.+||++++|+|+++|||+||+++|+|+|.|
T Consensus       100 ~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V  142 (145)
T 3ivv_A          100 RAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSV  142 (145)
T ss_dssp             SCEEEET-TCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEE
T ss_pred             ceEEecC-CCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEE
Confidence            4688974 679999999999999999999999999999999983

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=98.07  E-value=9.3e-07  Score=78.09  Aligned_cols=47  Identities=26%  Similarity=0.504  Sum_probs=42.2

Q ss_pred             ceeeeeCCCcccccccccccccccCCCCCeEEcCeEEEEEEEE-Eecc
Q 037079            4 KRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVL-VKER   50 (201)
Q Consensus         4 ~~~~f~~~~~~~G~~~f~~~~~~~~~~~gy~~~d~~~~~~~v~-~~~~   50 (201)
                      ..|+|.....+|||.+||++++|.|+++|||+||+++|+|+|. ..|+
T Consensus       116 ~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~  163 (522)
T 2f1z_A          116 ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPH  163 (522)
T ss_dssp             CCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCB
T ss_pred             ceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeeccccc
Confidence            3588988888999999999999999999999999999999999 4443

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=98.06  E-value=1.1e-06  Score=72.41  Aligned_cols=42  Identities=36%  Similarity=0.523  Sum_probs=38.5

Q ss_pred             ceeeeeCCCcccccccccccccccCCCCCeEEcCeEEEEEEEE
Q 037079            4 KRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVL   46 (201)
Q Consensus         4 ~~~~f~~~~~~~G~~~f~~~~~~~~~~~gy~~~d~~~~~~~v~   46 (201)
                      ..|+|+.. .+|||.+||+|++|+++++|||+||+++++++|.
T Consensus        96 ~~~~F~~~-~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~  137 (312)
T 3hqi_A           96 RAYRFVQG-KDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVS  137 (312)
T ss_dssp             SCEEECTT-CEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEE
T ss_pred             CceeCCCC-CCcCHHHhccHHHhhccccCeecCCEEEEEEEEE
Confidence            46788854 5999999999999999999999999999999999

>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*

Probab=83.70  E-value=0.35  Score=43.17  Aligned_cols=36  Identities=19%  Similarity=0.274  Sum_probs=31.1

Q ss_pred             cccccccccccccccCCCCCeEEcCeEEEEEEEE-Eecc
Q 037079           13 LEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVL-VKER   50 (201)
Q Consensus        13 ~~~G~~~f~~~~~~~~~~~gy~~~d~~~~~~~v~-~~~~   50 (201)
                      ..|||+.||+++.|.  +..||.||.++|-|.|. +...
T Consensus       533 ~~~G~~~fish~~l~--~r~fiK~d~~~i~~~~eD~~~l  569 (592)
T 4gwm_A          533 GGYGTSAFITHERLK--SRDFIKGDDVYILLTVEDISHL  569 (592)
T ss_dssp             EEEEEEEEEEHHHHT--STTSSBTTBEEEEEEEEECGGG
T ss_pred             CCcCccccccHHHHh--hcCcccCCeEEEEEEEEeCccc
Confidence            468999999999998  56799999999999998 5444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	201
d2cr2a1	146	b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {H	4e-20
d2cr2a1	146	b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {H	1e-06
d1czya1	152	b.8.1.1 (A:350-501) TNF receptor associated factor	7e-20
d1czya1	152	b.8.1.1 (A:350-501) TNF receptor associated factor	2e-04
d1l0aa1	155	b.8.1.1 (A:350-504) TNF receptor associated factor	2e-19
d1l0aa1	155	b.8.1.1 (A:350-504) TNF receptor associated factor	5e-04
d1lb6a_	155	b.8.1.1 (A:) TNF receptor associated factor 6 (TRA	4e-15
d1lb6a_	155	b.8.1.1 (A:) TNF receptor associated factor 6 (TRA	1e-04

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Length = 146

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.2 bits (197), Expect = 4e-20
 Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 14/138 (10%)

Query: 69  YKHVWKIENFSKLEA---KRHESEVFIVRDQ---KWKIQLHPKGIKSGTGSHVSMSLALV 122
           + ++W I NFS       +  +S  F        KW ++++PKG+   +  ++S+ L LV
Sbjct: 5   FSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLV 64

Query: 123 DSSTITPGFKIYVHFTLRIRDQVRGKHKEANTSIWFRSS----WGWPRFAELSYLNEAGN 178
                 P  ++   F   I +    + K   +   +R      WG+ +F    +L +  N
Sbjct: 65  S----CPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEAN 120

Query: 179 GFLVNDGCIVEAEVSVLG 196
           G L +D   +  EVSV+ 
Sbjct: 121 GLLPDDKLTLFCEVSVVQ 138

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Length = 146

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 1e-06
 Identities = 15/49 (30%), Positives = 21/49 (42%)

Query: 1   CHGKRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLVKE 49
              +R        +WGF +FI  +   D +NG L DD      EV V +
Sbjct: 90  MESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 138

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Length = 152

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.8 bits (196), Expect = 7e-20
 Identities = 29/150 (19%), Positives = 54/150 (36%), Gaps = 23/150 (15%)

Query: 70  KHVWKIENFSKL-------EAKRHESEVFIVRDQ--KWKIQLHPKGIKSGTGSHVSMSLA 120
             +WKI +F +              S  F       K  ++++  G  +G G+H+S+   
Sbjct: 4   VFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFV 63

Query: 121 LVDSSTITPGF-KIYVHFTLRIRDQVRGKHKEANTSIWFRS------------SWGWPRF 167
           ++                TL + DQ   +H          S            + G P F
Sbjct: 64  VMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLF 123

Query: 168 AELSYLNEAGNGFLVNDGCIVEAEVSVLGI 197
             +S + EA N ++ +D   ++A V + G+
Sbjct: 124 CPVSKM-EAKNSYVRDDAIFIKAIVDLTGL 152

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Length = 152

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 2e-04
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 6   RRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEV 45
           R  + + +  G   F P+ +  +A N Y+ DD     A V
Sbjct: 109 RPVNDMNIASGCPLFCPVSKM-EAKNSYVRDDAIFIKAIV 147

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.1 bits (194), Expect = 2e-19
 Identities = 21/152 (13%), Positives = 47/152 (30%), Gaps = 25/152 (16%)

Query: 70  KHVWKIENFSKL-------EAKRHESEVFIVRDQ--KWKIQLHPKGIKSGTGSHVSMSLA 120
             +WKI ++ +        +     S+ F       K   +++  G   G G+H+S+   
Sbjct: 4   VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFV 63

Query: 121 LVDSST-ITPGFKIYVHFTLRIRDQVRGKHKEANTSIWFR-------------SSWGWPR 166
           ++         +      TL + DQ   +    +                    + G P 
Sbjct: 64  IMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPV 123

Query: 167 FAELSYLNEAGNGFLVNDGCIVEAEVSVLGIS 198
           F   + L      ++ +D   ++  V    + 
Sbjct: 124 FVAQTVLEN--GTYIKDDTIFIKVIVDTSDLP 153

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 5e-04
 Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 2/40 (5%)

Query: 6   RRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEV 45
           +    + +  G   F+        +  Y+ DDT      V
Sbjct: 110 KPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIV 147

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (164), Expect = 4e-15
 Identities = 26/151 (17%), Positives = 49/151 (32%), Gaps = 29/151 (19%)

Query: 70  KHVWKIENFSKL-------EAKRHESEVFIVRDQ--KWKIQLHPKGIKSG-TGSHVSMSL 119
            ++WKI NF          +     S  F       K  ++LH +   +    +++S+ +
Sbjct: 6   IYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFV 65

Query: 120 ALVDSSTITP-GFKIYVHFTLRIRDQVRGK---------HKEANTSIWFR-------SSW 162
             +     +   +       L I DQ               +     + R         +
Sbjct: 66  HTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGF 125

Query: 163 GWPRFAELSYLNEAGNGFLVNDGCIVEAEVS 193
           G+  F  L  L +    F+ +D  +V  EVS
Sbjct: 126 GYVTFMHLEALRQ--RTFIKDDTLLVRCEVS 154

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 1e-04
 Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 1   CHGKRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEV 45
              +R         +G+  F+ LE        ++ DDT +   EV
Sbjct: 111 LAFQRPTIPRNPKGFGYVTFMHLEALR--QRTFIKDDTLLVRCEV 153

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	201
d2cr2a1	146	Speckle-type poz protein SPOP {Human (Homo sapiens	99.96
d1czya1	152	TNF receptor associated factor 2 (TRAF2) {Human (H	99.96
d1l0aa1	155	TNF receptor associated factor 3 (TRAF3) {Human (H	99.96
d1lb6a_	155	TNF receptor associated factor 6 (TRAF6) {Human (H	99.94
d2cr2a1	146	Speckle-type poz protein SPOP {Human (Homo sapiens	98.45

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.2e-30  Score=190.08  Aligned_cols=127  Identities=26%  Similarity=0.468  Sum_probs=109.1

Q ss_pred             ccEEEEEEccccccc---CceEeeCeEEEcCe---EEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCCCceEEEEEEEEE
Q 037079           68 IYKHVWKIENFSKLE---AKRHESEVFIVRDQ---KWKIQLHPKGIKSGTGSHVSMSLALVDSSTITPGFKIYVHFTLRI  141 (201)
Q Consensus        68 ~~~~~w~I~nfS~l~---~~~~~S~~f~~gg~---~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~~~~w~~~~~f~l~l  141 (201)
                      ..+|+|+|+|||.++   +++++||.|.+||+   +|+|.+||+|...+.++||||||.+.+..    .|++.++|+|+|
T Consensus         4 ~~~~~W~I~nfs~~~~~~~~~~~Sp~F~~~~~~~~~W~l~lyp~G~~~~~~~~lSv~L~~~~~~----~~~v~~~~~~~l   79 (146)
T d2cr2a1           4 KFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCP----KSEVRAKFKFSI   79 (146)
T ss_dssp             EEEEEEEEETGGGCCCCSSCCEECCCBCSSSCCSCCBEEEECTTCSSSSSSSBCCEEEECCCCS----SSEEEEECEEEE
T ss_pred             EEEEEEEECCchHHhhcCCCEEECCCEEeCCcCCeEEEEEEEECCCCCCCCCEEEEEEEeccCC----CceEEEEEEEEE
Confidence            478999999999886   46899999998875   89999999999887789999999998753    699999999999


Q ss_pred             EcCCCCeeEEe--eeceeec--cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEEEeee
Q 037079          142 RDQVRGKHKEA--NTSIWFR--SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLGIS  198 (201)
Q Consensus       142 ~n~~~~~~~~~--~~~~~F~--~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v~~~t  198 (201)
                      +||.++.....  ...+.|.  .+|||++||++++|+++.+|||+||+|+|+|+|+|++.+
T Consensus        80 ~n~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~~~~g~l~~d~l~I~~~I~v~~e~  140 (146)
T d2cr2a1          80 LNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDS  140 (146)
T ss_dssp             ECTTSCEEEEEECSCCEEEETTCEEEESCCSBHHHHSCTTTTSCTTSEEEEEEEEEEECCS
T ss_pred             EcCCCCcccceEecceEeCCCCCeeeccEEEEHHHhcCcccCceeCCEEEEEEEEEEEeCC
Confidence            99998764322  2233344  789999999999999998999999999999999999765

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.1e-30  Score=191.31  Aligned_cols=127  Identities=20%  Similarity=0.274  Sum_probs=104.9

Q ss_pred             ccEEEEEEccccccc-------CceEeeCeEEEc--CeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCC-CCCceEEEEE
Q 037079           68 IYKHVWKIENFSKLE-------AKRHESEVFIVR--DQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTI-TPGFKIYVHF  137 (201)
Q Consensus        68 ~~~~~w~I~nfS~l~-------~~~~~S~~f~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~-~~~w~~~~~f  137 (201)
                      .|+|+|+|+|||.++       ++.++||+|.+|  ||+|+|.+||+|+..+.++|+||||++.+++.. +..|++.++|
T Consensus         2 ~g~f~W~I~nFs~l~~~~~~~~~~~~~Sp~F~~g~~Gy~w~l~~yP~G~~~~~~~~lSlyL~l~~~~~d~~~~~~~~~~~   81 (152)
T d1czya1           2 DGVFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKV   81 (152)
T ss_dssp             SSEEEEEECSHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCCE
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCceEECcCEEcCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCcCcccccceeeEE
Confidence            589999999999885       346999999998  999999999999987778999999999876432 4579999999


Q ss_pred             EEEEEcCCCCeeEEeee---------ceeec---cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEEE
Q 037079          138 TLRIRDQVRGKHKEANT---------SIWFR---SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVL  195 (201)
Q Consensus       138 ~l~l~n~~~~~~~~~~~---------~~~F~---~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v~  195 (201)
                      +|+|+||.++.+.....         .+.+.   .+|||++||++++|+ +++|||+||+|+|+|+|.|.
T Consensus        82 ~~~l~d~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~G~~~fi~~~~L~-~~~gfl~dD~l~I~~~V~v~  150 (152)
T d1czya1          82 TLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKME-AKNSYVRDDAIFIKAIVDLT  150 (152)
T ss_dssp             EEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETCCCC-CSTTTSCSSCEEEEEEECCT
T ss_pred             EEEEEcCCCCccceeeeccccccccccCCCcccccccchhhEEEHHHhc-ccCCcEeCCEEEEEEEEEec
Confidence            99999998876432211         11122   679999999999996 35799999999999999764

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.6e-29  Score=187.88  Aligned_cols=129  Identities=16%  Similarity=0.203  Sum_probs=106.1

Q ss_pred             ccEEEEEEccccccc-------CceEeeCeEEEc--CeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCC-CCCceEEEEE
Q 037079           68 IYKHVWKIENFSKLE-------AKRHESEVFIVR--DQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTI-TPGFKIYVHF  137 (201)
Q Consensus        68 ~~~~~w~I~nfS~l~-------~~~~~S~~f~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~-~~~w~~~~~f  137 (201)
                      +|+|+|+|+|||.++       +..++||+|.+|  ||+|+|++||+|++.+.++||||||++.+++.. ...|++.++|
T Consensus         2 ~g~f~W~I~nfs~~~~~~~~~~~~~~~S~~F~~~~~Gy~w~l~~yp~G~~~~~~~~lSlyL~l~~~~~d~~~~~~~~~~~   81 (155)
T d1l0aa1           2 NGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKV   81 (155)
T ss_dssp             SSEEEEEEECHHHHHHHHHTTSCSEEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTTTTSCSSCCCCE
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCcEEECcCEEeCCCCcEEEEEEEeCCCCCCCCCEEEEEEEEccCCcCcccCCcEEEEE
Confidence            589999999999874       347999999998  999999999999987778999999999876432 4579999999


Q ss_pred             EEEEEcCCCCee-EEeee---------ceeec---cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEEEeee
Q 037079          138 TLRIRDQVRGKH-KEANT---------SIWFR---SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLGIS  198 (201)
Q Consensus       138 ~l~l~n~~~~~~-~~~~~---------~~~F~---~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v~~~t  198 (201)
                      +|+|+||.++.. .....         .+.+.   .+|||++||++++|++  +|||+||+|+|+|+|.+....
T Consensus        82 ~~~l~~q~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~V~~~~~~  153 (155)
T d1l0aa1          82 TLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLP  153 (155)
T ss_dssp             EEEECCCSSSCCCEEEEECCCTTSTTSSCCSSSBCCCEEEEEEEEHHHHHT--TTTCBTTEEEEEEEECCSSSC
T ss_pred             EEEEecCCCCccceeEEEeeccccccccccccccccCcChhheeEHHHhhh--CCCEECCEEEEEEEEEeCCCC
Confidence            999999987652 22111         12232   6799999999999985  899999999999999765443

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.3e-27  Score=178.40  Aligned_cols=126  Identities=21%  Similarity=0.214  Sum_probs=102.5

Q ss_pred             cCccEEEEEEccccccc-------CceEeeCeEEEc--CeEEEEEEEeCCCCCCC-CCEEEEEEEEccCCC-CCCCceEE
Q 037079           66 ASIYKHVWKIENFSKLE-------AKRHESEVFIVR--DQKWKIQLHPKGIKSGT-GSHVSMSLALVDSST-ITPGFKIY  134 (201)
Q Consensus        66 ~~~~~~~w~I~nfS~l~-------~~~~~S~~f~~g--g~~W~l~vyP~G~~~~~-~~~lSlyL~~~~~~~-~~~~w~~~  134 (201)
                      ...|+|+|+|+|||.++       ++.++||+|.+|  ||+|+|.+||+|...+. ++|+||||++.+++. ...+|++.
T Consensus         2 ~~~G~f~W~I~nfs~~~~~~~~~~~~~i~Sp~F~~g~~Gy~wrl~~yp~g~~~~~~~~~lsvyL~l~~~~~d~~~~~~~~   81 (155)
T d1lb6a_           2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ   81 (155)
T ss_dssp             CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             ccccEEEEEECChHHHHHhhhcCCCcEEECcCEEeCCCCcEEEEEEEeCCCCCCCCCCEEEEEEEEecCcccccCCCcEE
Confidence            35689999999999885       347999999998  99999999999987653 589999999987643 24579999


Q ss_pred             EEEEEEEEcCCCCee---EEee----------eceeec---cCCCccceeechhhhcCCCCeEeCCEEEEEEEEE
Q 037079          135 VHFTLRIRDQVRGKH---KEAN----------TSIWFR---SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVS  193 (201)
Q Consensus       135 ~~f~l~l~n~~~~~~---~~~~----------~~~~F~---~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~  193 (201)
                      ++++|+|++|.+...   ....          ..+.+.   .+|||++||++++|++  +|||+||+|+|+|+|+
T Consensus        82 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~L~~--~gyl~dD~l~I~~~V~  154 (155)
T d1lb6a_          82 GTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQ--RTFIKDDTLLVRCEVS  154 (155)
T ss_dssp             SEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGT--SCCCBTTBEEEEEEEE
T ss_pred             EEEEEEEECCCCCccceeeEEeeecCCccccccCCcccCCcCCcChHHeeEHHHhcc--CCCEECCEEEEEEEEE
Confidence            999999999987642   1111          011232   5799999999999985  8999999999999986

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=5e-08  Score=70.14  Aligned_cols=46  Identities=33%  Similarity=0.473  Sum_probs=40.0

Q ss_pred             eeeeeCCCcccccccccccccccCCCCCeEEcCeEEEEEEEE-Eecc
Q 037079            5 RRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVL-VKER   50 (201)
Q Consensus         5 ~~~f~~~~~~~G~~~f~~~~~~~~~~~gy~~~d~~~~~~~v~-~~~~   50 (201)
                      .+.|.....+|||++||++++|++|.+|||.||+++|+++|. +.++
T Consensus        94 ~~~~~~~~~~~G~~~fi~~~~l~~~~~g~l~~d~l~I~~~I~v~~e~  140 (146)
T d2cr2a1          94 RAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDS  140 (146)
T ss_dssp             CCEEEETTCEEEESCCSBHHHHSCTTTTSCTTSEEEEEEEEEEECCS
T ss_pred             ceEeCCCCCeeeccEEEEHHHhcCcccCceeCCEEEEEEEEEEEeCC
Confidence            345666778999999999999999999999999999999999 5444