Citrus Sinensis ID: 037091

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------
Protein Sequence
MLLQINPRSSFSLKYHPLQHAGSVKTFQTRVKHINGLANKSESKKYSVRCSSESSFFLTNKIGHSEDLVINRNHKLLSKSTVALAAQDGYSSESELVSTSFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cEcEEccccccEEcccccccccccccccEEEEccccccccccccccEEEEEEccccEEEEEEcccccEEEEcccccEEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHEEEEHHHcccccHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mllqinprssfslkyhplqhagsvktFQTRVKHINGlankseskkysvrcssessffltnkighsedlvINRNHKLLSKSTVALAAqdgysseseLVSTSFMQVLNKKCDafyrltrpySCVSIIAALLSVsllplqnpadftPKLIIEAFKCMVPAIMMNNYANAINQLADVhidkvnkphlplacgdfsmgegLAITIASPLMAVAMGImlrspplvIGFIIWCIvggaysidlppllrwkgnpLMAAVTIISMNGLLLLFPFFIHFQKIVLGNP
Flexible Loop (DISEMBL)
MLLQINPRSSFSLKYHPLQHAGSVKTFQTRVKHINglankseskkysvRCSSESSFFLTNKIGHSEDLVINRNHKLLSKSTVALAAQDGYSSESELVSTSFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNP
Low Complexity Region (SEG)
MLLQINPRSSFSLKYHPLQHAGSVKTFQTRVKHINGLANKSESKKYSVRCSSESSFFLTNKIGHSEDLVINRNHKLLSKSTVALAAQDGYSSESELVSTSFMQVLNKKCDAFYRLTRPYSCvsiiaallsvsllPLQNPADFTPKLIIEAFKCMVPaimmnnyanainQLADVHIDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNP
Disordered region (IsUnstruct)
***********************VKTFQTRVKHIN*******************SFFLTNKIGHSEDLVINRNHKLLSKSTVALAAQDGY****ELVSTSFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVL***
Disordered Region (DISOPRED)
**********************************************************************************************************KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNP
Disordered Region (DISEMBL)
MLLQINPRSSFSLKYHPLQHAGSVKTFQTRVKHINGLAN************SESSFFLTNKIGHSEDLVINRNHKLLSKSTVALA***********VSTSFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNP
Disordered Region (DISPRO)
MLLQINPRSSFSLKYHPLQHAGSVKTFQTRVKHINGLANKSESKKYSVRCSSESSFFLTNKIGHSEDLVINRNHKLLSKSTVALA************STSFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLQINPRSSFSLKYHPLQHAGSVKTFQTRVKHINGLANKSESKKYSVRCSSESSFFLTNKIGHSEDLVINRNHKLLSKSTVALAAQDGYSSESELVSTSFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	277	2.2.26 [Sep-21-2011]
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	0.750	0.529	0.362	1e-33
B7FA90	404	Probable homogentisate ph	no	no	0.743	0.509	0.357	1e-31
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.599	0.405	0.365	3e-24
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.638	0.431	0.331	1e-23
Q0D576	379	Probable homogentisate ph	no	no	0.631	0.461	0.292	2e-11
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.768	0.551	0.285	3e-10
B1L6Z7	281	Digeranylgeranylglyceryl	yes	no	0.429	0.423	0.308	3e-06
Q9UWY6	282	Digeranylgeranylglyceryl	yes	no	0.317	0.312	0.333	0.0001

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  143 bits (361), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 78/215 (36%), Positives = 125/215 (58%), Gaps = 7/215 (3%)

Query: 63  GHSEDLVINRNHKLLSKSTVALAAQDGYSSESELVSTSFMQVLNKKCDAFYRLTRPYSCV 122
           G    L++   HK   +        + + S S+    SF   L    DAFYR +RP++ +
Sbjct: 57  GQGSSLLLYPKHKSRFRVNATAGQPEAFDSNSK--QKSFRDSL----DAFYRFSRPHTVI 110

Query: 123 SIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPH 182
             + ++LSVS L ++  +D +P L     + +V A+MMN Y   +NQL+DV IDKVNKP+
Sbjct: 111 GTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPY 170

Query: 183 LPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRW 242
           LPLA G++S+  G+AI  +  +M+  +G ++ S PL     +  ++G AYSI+L PLLRW
Sbjct: 171 LPLASGEYSVNTGIAIVASFSIMSFWLGWIVGSWPLFWALFVSFMLGTAYSINL-PLLRW 229

Query: 243 KGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNP 277
           K   L+AA+ I+++  +++   F++H Q  V G P
Sbjct: 230 KRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRP 264

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  136 bits (343), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/210 (35%), Positives = 123/210 (58%), Gaps = 4/210 (1%)

Query: 71  NRNHKLLSKSTVALAAQDGY---SSESELVSTSFMQVLNKKCDAFYRLTRPYSCVSIIAA 127
           + +H++  + T + A   G    SS     S+S  + ++   DAFYR +RP++ +    +
Sbjct: 67  SSHHRIPHRPTSSSADASGQPLQSSAEAHDSSSIWKPISSSLDAFYRFSRPHTVIGTALS 126

Query: 128 LLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPLAC 187
           ++SVSLL ++N +D +P  +    + +V A+ MN Y   +NQL D+ IDKVNKP LPLA 
Sbjct: 127 IVSVSLLAVENLSDVSPLFLTGLLEAVVAALFMNIYIVGLNQLFDIEIDKVNKPTLPLAS 186

Query: 188 GDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPL 247
           G++S   G+A+  A   M+  +G  + S PL +   I  I+G AYSI+L P LRWK + +
Sbjct: 187 GEYSPATGVALVSAFAAMSFGLGWAVGSQPLFLALFISFILGTAYSINL-PFLRWKRSAV 245

Query: 248 MAAVTIISMNGLLLLFPFFIHFQKIVLGNP 277
           +AA+ I+++  +++   FF+H Q  V   P
Sbjct: 246 VAALCILAVRAVIVQLAFFLHIQTFVFRRP 275

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score =  112 bits (280), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 92/167 (55%), Gaps = 1/167 (0%)

Query: 111 AFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQL 170
           AFY  + PY+ + I     S SLL ++  +D +   +I   + ++P + +  Y   +NQL
Sbjct: 115 AFYWFSYPYTMIGITLCAFSSSLLAVEKLSDISLSFLIGVLQGVLPQLFIEIYLCGVNQL 174

Query: 171 ADVHIDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGG 230
            D+ IDK+NKPHLP+A G FS   G+ I+ A   ++     +  S PL+   ++      
Sbjct: 175 YDLEIDKINKPHLPMASGQFSFKTGVIISAAFLALSFGFTWITGSWPLICNLVVIASSWT 234

Query: 231 AYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNP 277
           AYSID+ PLLRWK  P +AA+ +IS   L L   +F H Q +VL  P
Sbjct: 235 AYSIDV-PLLRWKRYPFVAAMCMISTWALALPISYFHHMQTVVLKRP 280

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  110 bits (276), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 93/178 (52%), Gaps = 1/178 (0%)

Query: 100 SFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIM 159
           S    +N   D FY+  RPY+  +I+      SL+ ++  +D +    I   + +V  I 
Sbjct: 105 SIWDSVNDALDIFYKFCRPYAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVIC 164

Query: 160 MNNYANAINQLADVHIDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLV 219
           ++ +   +NQL D+ IDK+NKP LPLA G  S    + IT +S ++ +    ++ S PL 
Sbjct: 165 IHIFGVGLNQLCDIEIDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDSWPLF 224

Query: 220 IGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNP 277
               I C+V  AY++DL PLLRWK  P++ A+  I+   +     FF+H Q  V   P
Sbjct: 225 WTVFISCMVASAYNVDL-PLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRP 281

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 13/188 (6%)

Query: 79  KSTVALAAQDGYSSESELVSTSFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLP--- 135
           +  V + +Q G +  + L  T     L+   D+ +R  RP++      AL S++L+    
Sbjct: 59  RDAVRVCSQAGAAGPAPLSKT-----LSDLKDSCWRFLRPHTIRG--TALGSIALVARAL 111

Query: 136 LQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPLACGDFSMGEG 195
           ++NP      L+ +AF  +V  I  N Y   INQ+ D+ IDKVNKP+LP+A GD S+   
Sbjct: 112 IENPQLINWWLVFKAFYGLVALICGNGYIVGINQIYDIRIDKVNKPYLPIAAGDLSVQTA 171

Query: 196 LAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIIS 255
             + +       ++ +    P +   + +   +G  YS+  PP  R K  P+ A + I +
Sbjct: 172 WLLVVLFAAAGFSIVVTNFGPFITSLYCLGLFLGTIYSV--PP-FRLKRYPVAAFLIIAT 228

Query: 256 MNGLLLLF 263
           + G LL F
Sbjct: 229 VRGFLLNF 236

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 118/252 (46%), Gaps = 39/252 (15%)

Query: 37  LANKSESKKYSVRCSSESSFFLTNKIGHSEDLVINRNHKLLSKSTVALAAQDGYSSESEL 96
           LA K  S    VR +S S+  + +K        ++ N++   K ++   +Q G +   + 
Sbjct: 33  LAGKFISLPRDVRFTSLSTSRMRSKF-------VSTNYR---KISIRACSQVGAAESDDP 82

Query: 97  VSTSFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLP---LQNPADFTPKLIIEAFKC 153
           V    +  + +  +A +R  RP++      AL S +L+    ++N       L+++A   
Sbjct: 83  V----LDRIARFQNACWRFLRPHTIRG--TALGSTALVTRALIENTHLIKWSLVLKALSG 136

Query: 154 MVPAIMMNNYANAINQLADVHIDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMGIML 213
           ++  I  N Y   INQ+ D+ IDKVNKP+LP+A GD S+     + I     A+A G+  
Sbjct: 137 LLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVI---FFAIA-GL-- 190

Query: 214 RSPPLVIGFIIWCIVGGAYSIDL--------PPLLRWKGNPLMAAVTIISMNGLLLLFPF 265
               LV+GF     +   YS+ L        PP LR K  P+ A + I ++ G LL F  
Sbjct: 191 ----LVVGFNFGPFITSLYSLGLFLGTIYSVPP-LRMKRFPVAAFLIIATVRGFLLNFGV 245

Query: 266 FIHFQKIVLGNP 277
           + H  +  LG P
Sbjct: 246 Y-HATRAALGLP 256

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1L6Z7|DGGGP_KORCO Digeranylgeranylglyceryl phosphate synthase OS=Korarchaeum cryptofilum (strain OPF8) GN=Kcr_1480 PE=3 SV=1

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 17/136 (12%)

Query: 108 KCDAFYRLTRPYSCV-SIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANA 166
           K  A+  ++RP + + SI+  L       + + + +  +LI+    C++P +++    NA
Sbjct: 3   KLGAYVEISRPKNALMSILGTLTG----WVNSTSVYDGRLILA---CLIPPLVLMA-GNA 54

Query: 167 INQLADVHIDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWC 226
           IN   D  ID +NKP+ P+  G  S  E L I IA  L  +A+ I L       GFI + 
Sbjct: 55  INDYYDAEIDAINKPYRPIPSGRISKREALNIYIALSLFGIALSIFL-------GFIEFL 107

Query: 227 IVGGAYSIDLPPLLRW 242
           IV  A+S+      RW
Sbjct: 108 IV-TAFSLSWYAYARW 122

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q9UWY6|DGGGP_SULSO Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=ubiA-2 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 2/90 (2%)

Query: 167 INQLADVHIDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWC 226
           IN + DV IDK+NKP+ P+  G  S+ +  A++IA  ++ +A+ I+L    LVI  +   
Sbjct: 56  INDVYDVEIDKINKPYRPIPSGKISVNKAKALSIALFIIGIALSILLNIYALVIALV--T 113

Query: 227 IVGGAYSIDLPPLLRWKGNPLMAAVTIISM 256
            +G  Y         + GN L+A  T +S+
Sbjct: 114 AIGLIYYAKDLKKTGFYGNLLVATTTALSI 143

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids. Can not use other prenyl donors, i.e. farnesyl diphosphate (FPP) and phytyl diphosphate. Moreover, 4-hydroxybenzoate, 1,4-dihydroxy 2-naphthoate, homogentisate, and alpha-glycerophosphate do not function as prenyl acceptor substrates.

Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (taxid: 273057)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
359476155	397	PREDICTED: probable homogentisate phytyl	0.880	0.614	0.393	8e-39
296082088	398	unnamed protein product [Vitis vinifera]	0.870	0.605	0.394	5e-38
295656253	401	homogentisate geranylgeranyl transferase	0.620	0.428	0.479	3e-37
224143266	284	predicted protein [Populus trichocarpa]	0.595	0.580	0.457	7e-37
219842170	411	homogentisate geranylgeranyl transferase	0.931	0.627	0.362	1e-36
171190284	317	homogentisate geranylgeranyl transferase	0.671	0.586	0.433	1e-35
449461195	409	PREDICTED: homogentisate phytyltransfera	0.693	0.469	0.381	2e-32
225001450	395	homogentisate phytylprenyltransferase [L	0.823	0.577	0.354	6e-32
30680535	393	homogentisate phytyltransferase 1 [Arabi	0.750	0.529	0.362	7e-32
125598038	408	hypothetical protein OsJ_22157 [Oryza sa	0.664	0.450	0.398	9e-32

>gi|359476155|ref|XP_002282953.2| PREDICTED: probable homogentisate phytyltransferase 1, chloroplastic-like [Vitis vinifera]

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 102/259 (39%), Positives = 149/259 (57%), Gaps = 15/259 (5%)

Query: 18  LQHAGSVKTFQTRVKHINGLANKSESKKYSVRCSSESSFFLTNKIGHSEDLVINRNHKLL 77
           LQ  G V+  Q  VK  +    KS       +C SE  F  +  I H    +  ++HK  
Sbjct: 24  LQQQGCVQPPQLSVKKTHNFL-KSCYCSNPFKCCSEG-FSSSVNIQH----LTFKSHK-- 75

Query: 78  SKSTVALAAQDGYSSESELVSTSFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQ 137
            ++ + ++++ GY S+ E  +      ++K+  AFY  +RP++ +  +  + SVSLLPL+
Sbjct: 76  -RNPIHVSSEYGYPSKPEDQNH-----VSKQLRAFYLFSRPHTIIGTVIGITSVSLLPLE 129

Query: 138 NPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPLACGDFSMGEGLA 197
             +D +P   +   K MVP+++MN Y   +NQ+ DV IDKVNKP LPLA GDFSM  G  
Sbjct: 130 TISDLSPAFFVGLLKAMVPSVLMNIYVVGLNQIFDVEIDKVNKPELPLASGDFSMETGSQ 189

Query: 198 ITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMN 257
           I   S LM+V MGIM +SPPL    +I  ++G AYSI++ PLLRWK  PL+AA  I+ + 
Sbjct: 190 IVFISLLMSVGMGIMFQSPPLFCALLISFLLGTAYSIEI-PLLRWKRYPLLAASCILIVR 248

Query: 258 GLLLLFPFFIHFQKIVLGN 276
            +++   FF H QK VLG 
Sbjct: 249 AIVVQLAFFAHIQKHVLGR 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082088|emb|CBI21093.3| unnamed protein product [Vitis vinifera]

 Score =  164 bits (414), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 101/256 (39%), Positives = 148/256 (57%), Gaps = 15/256 (5%)

Query: 21  AGSVKTFQTRVKHINGLANKSESKKYSVRCSSESSFFLTNKIGHSEDLVINRNHKLLSKS 80
           AG V+  Q  VK  +    KS       +C SE  F  +  I H    +  ++HK   ++
Sbjct: 3   AGCVQPPQLSVKKTHNFL-KSCYCSNPFKCCSEG-FSSSVNIQH----LTFKSHK---RN 53

Query: 81  TVALAAQDGYSSESELVSTSFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPA 140
            + ++++ GY S+ E  +      ++K+  AFY  +RP++ +  +  + SVSLLPL+  +
Sbjct: 54  PIHVSSEYGYPSKPEDQNH-----VSKQLRAFYLFSRPHTIIGTVIGITSVSLLPLETIS 108

Query: 141 DFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPLACGDFSMGEGLAITI 200
           D +P   +   K MVP+++MN Y   +NQ+ DV IDKVNKP LPLA GDFSM  G  I  
Sbjct: 109 DLSPAFFVGLLKAMVPSVLMNIYVVGLNQIFDVEIDKVNKPELPLASGDFSMETGSQIVF 168

Query: 201 ASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLL 260
            S LM+V MGIM +SPPL    +I  ++G AYSI++ PLLRWK  PL+AA  I+ +  ++
Sbjct: 169 ISLLMSVGMGIMFQSPPLFCALLISFLLGTAYSIEI-PLLRWKRYPLLAASCILIVRAIV 227

Query: 261 LLFPFFIHFQKIVLGN 276
           +   FF H QK VLG 
Sbjct: 228 VQLAFFAHIQKHVLGR 243

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295656253|gb|ADG26667.1| homogentisate geranylgeranyl transferase [Coriandrum sativum]

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 83/173 (47%), Positives = 113/173 (65%), Gaps = 1/173 (0%)

Query: 105 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYA 164
           L +K DAFYR +RP++ +  I  + SVSLLPL +  D +P   +   K ++P+I MN Y 
Sbjct: 101 LWRKIDAFYRFSRPHTIIGTIIGITSVSLLPLTSIGDLSPAFFVGYLKALIPSIFMNIYV 160

Query: 165 NAINQLADVHIDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFII 224
             +NQL DV IDKVNKP+LPLA G++SMG G AI  A  LM+ AMGI+ +SPP+    +I
Sbjct: 161 VGLNQLFDVEIDKVNKPNLPLASGEYSMGLGKAIVSAFGLMSFAMGIVFQSPPVFFALLI 220

Query: 225 WCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNP 277
             + G AYS++L PLLRWK N  +AA +I+ +  + +   FF H QK VLG P
Sbjct: 221 CFLFGSAYSVEL-PLLRWKRNAFLAAFSILMVRAITVNLAFFYHIQKYVLGRP 272

Source: Coriandrum sativum

Species: Coriandrum sativum

Genus: Coriandrum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143266|ref|XP_002324898.1| predicted protein [Populus trichocarpa] gi|222866332|gb|EEF03463.1| predicted protein [Populus trichocarpa]

 Score =  160 bits (404), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 76/166 (45%), Positives = 110/166 (66%), Gaps = 1/166 (0%)

Query: 111 AFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQL 170
           +FY+ +RP++ +  +  + SVSLLP++  ++ +P   +   K +VP+++MN Y   +NQL
Sbjct: 3   SFYQFSRPHTVIGTLIGITSVSLLPVETISELSPTFFMGLLKALVPSVLMNIYVVGLNQL 62

Query: 171 ADVHIDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGG 230
            DV IDKVNKP+LPLA GDFSMG G+AI  AS L + AMGIM +SP L    +I C++G 
Sbjct: 63  FDVEIDKVNKPYLPLASGDFSMGTGVAIVSASLLASFAMGIMFQSPLLFSALLISCVLGS 122

Query: 231 AYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGN 276
            YSI+L P LRWK    +AA  I+ +  +++   FF+H QK VLG 
Sbjct: 123 VYSIEL-PFLRWKKQAFLAATCIMIVRAIVVQLAFFVHMQKFVLGK 167

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219842170|dbj|BAH10642.1| homogentisate geranylgeranyl transferase [Hevea brasiliensis]

 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/270 (36%), Positives = 153/270 (56%), Gaps = 12/270 (4%)

Query: 14  KYHPLQHAGSVKTFQTRVKHINGLANKSESKKYSVRCSSESSFFLTNKIGHSEDLVINRN 73
           KY  L   G V T     K +N +  +S  KK  + CS  S  +  N     ++L + RN
Sbjct: 15  KYQVLD-PGQVTTVTVLKKQVNHILKESXCKK-PIICSLRSLSWAKN--SRKKELYVLRN 70

Query: 74  HKLLSKST--VALAAQDGY---SSES--ELVSTSFMQVLNKKCDAFYRLTRPYSCVSIIA 126
            ++L++     A+  Q+ +   +SE   ++ S+S    + +  ++ Y+ +RP++ +  I 
Sbjct: 71  LRILTRKNGIPAIFLQNNWLAPNSEDGDDICSSSKRGPILEHLNSLYQFSRPHTVIGTII 130

Query: 127 ALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPLA 186
            + SVSLLP++   D +P   I   K +VP+++MN Y   +NQL DV IDKVNKP+LPLA
Sbjct: 131 GITSVSLLPVETIVDLSPTYFIGLLKALVPSVLMNIYVVGLNQLFDVEIDKVNKPYLPLA 190

Query: 187 CGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNP 246
            G FSM  G+ I  AS L+++ MGI  +SPPL+   +I   +G  YSI+L P LRWK + 
Sbjct: 191 SGKFSMATGILIVSASLLLSLYMGITFQSPPLLAALLISFALGSVYSIEL-PFLRWKKHA 249

Query: 247 LMAAVTIISMNGLLLLFPFFIHFQKIVLGN 276
            +AA  I+ +  +++   FF+H QK VLG 
Sbjct: 250 FLAASCILIVRAMVVQLAFFVHIQKFVLGK 279

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171190284|gb|ACB42448.1| homogentisate geranylgeranyl transferase [Angelica gigas]

 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 81/187 (43%), Positives = 114/187 (60%), Gaps = 1/187 (0%)

Query: 91  SSESELVSTSFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEA 150
            +  + VS    Q L +K DAFYR TRP++ +  I  + SVSLLPL +  D +P   +  
Sbjct: 3   QANKQEVSPPLSQNLWRKVDAFYRFTRPHTIIGSIVGITSVSLLPLVSFEDLSPAFFVGL 62

Query: 151 FKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMG 210
            K M+P + +N Y   +NQL DV IDKVNKP+LP+A G++SM  G AI  A  LM++ MG
Sbjct: 63  LKVMIPIVCVNIYVVGLNQLYDVEIDKVNKPNLPIASGEYSMETGKAIVSAFGLMSIIMG 122

Query: 211 IMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQ 270
           IM +SPP++   ++    G AYSID+ PL RWK N  +AA+ I+ +  + +    F H Q
Sbjct: 123 IMFQSPPVLYCLLVCFFFGTAYSIDV-PLFRWKKNAFLAAMCIVIVRAITVQLTVFYHIQ 181

Query: 271 KIVLGNP 277
           + VLG P
Sbjct: 182 QYVLGRP 188

Source: Angelica gigas

Species: Angelica gigas

Genus: Angelica

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461195|ref|XP_004148327.1| PREDICTED: homogentisate phytyltransferase 1, chloroplastic-like [Cucumis sativus] gi|449522813|ref|XP_004168420.1| PREDICTED: homogentisate phytyltransferase 1, chloroplastic-like [Cucumis sativus]

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 119/194 (61%), Gaps = 2/194 (1%)

Query: 85  AAQDGYSSESE-LVSTSFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFT 143
           A+   + +ESE L S ++   +    DAFYR +RP++ +    +++SVSLL ++  +D +
Sbjct: 88  ASNQPFETESEALSSKNYGDSVRSFLDAFYRFSRPHTVIGTALSIVSVSLLAVEKLSDLS 147

Query: 144 PKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPLACGDFSMGEGLAITIASP 203
           P  +    + +V A+ MN Y   +NQL D+ IDK+NKP+LPLA G++S G G+AI     
Sbjct: 148 PLFLTGVLEAIVAALFMNIYIVGLNQLFDIEIDKINKPYLPLASGEYSFGTGVAIVSTFS 207

Query: 204 LMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLF 263
           +M+  +G ++RS PL     +  I+G AYSIDL PLLRWK   ++AA+ I+++  +++  
Sbjct: 208 IMSFWLGWVVRSWPLFWALFVSFILGTAYSIDL-PLLRWKRFAVVAAMCILAVRAVIVQL 266

Query: 264 PFFIHFQKIVLGNP 277
            FF+H Q  V   P
Sbjct: 267 AFFLHMQTHVFQRP 280

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225001450|gb|ACN78585.1| homogentisate phytylprenyltransferase [Lactuca sativa]

 Score =  144 bits (362), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 84/237 (35%), Positives = 135/237 (56%), Gaps = 9/237 (3%)

Query: 40  KSESKKYSVRCSSESSFFLTNKIGHSEDLVINRNHKLLSKSTVALAAQDGYSSESELVST 99
           +S      +RC  ESS    N    +E  + +R     + + VA A  +      E  S+
Sbjct: 38  RSSKGNRVIRC--ESSLVRHNLSSFNESFLFSRKR---NTNHVANAVSE---QPIEPESS 89

Query: 100 SFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIM 159
           S  ++L    DAFYR +RP++ +  + ++LSVSLL +Q  +DF+P   I  F+ +V A  
Sbjct: 90  SPQKLLPNAFDAFYRFSRPHTVIGTVLSILSVSLLAIQKLSDFSPLFFIGVFEAIVAAFF 149

Query: 160 MNNYANAINQLADVHIDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLV 219
           MN Y   +NQL+D+ IDKVNKP+LPLA G++S+  G+ I  +   M+  +G ++ S PL 
Sbjct: 150 MNIYIVGLNQLSDIEIDKVNKPYLPLASGEYSVKTGVIIVSSFAFMSFTLGWIVGSWPLF 209

Query: 220 IGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGN 276
               I  ++G AYSI++ P+LRWK   L+AA+ I+++  +++   F++H Q  V G 
Sbjct: 210 WALFISFLLGTAYSINM-PMLRWKRFALVAAMCILAVRAVIVQIAFYLHIQTFVYGR 265

Source: Lactuca sativa

Species: Lactuca sativa

Genus: Lactuca

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30680535|ref|NP_849984.1| homogentisate phytyltransferase 1 [Arabidopsis thaliana] gi|75161194|sp|Q8VWJ1.1|HPT1_ARATH RecName: Full=Homogentisate phytyltransferase 1, chloroplastic; AltName: Full=Tocopherol polyprenyltransferase 1; AltName: Full=Vitamin E pathway gene 2-1 protein; Short=AtVTE2-1; Flags: Precursor gi|17104828|gb|AAL35412.1|AF324344_1 tocopherol polyprenyltransferase [Arabidopsis thaliana] gi|17380874|gb|AAL36249.1| unknown protein [Arabidopsis thaliana] gi|20384919|gb|AAM10489.1| homogentisate phytylprenyltransferase [Arabidopsis thaliana] gi|21281072|gb|AAM45041.1| unknown protein [Arabidopsis thaliana] gi|281193026|gb|ADA57641.1| homogentisate phytyltransferase [Arabidopsis thaliana] gi|330251737|gb|AEC06831.1| homogentisate phytyltransferase 1 [Arabidopsis thaliana]

 Score =  143 bits (361), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 78/215 (36%), Positives = 125/215 (58%), Gaps = 7/215 (3%)

Query: 63  GHSEDLVINRNHKLLSKSTVALAAQDGYSSESELVSTSFMQVLNKKCDAFYRLTRPYSCV 122
           G    L++   HK   +        + + S S+    SF   L    DAFYR +RP++ +
Sbjct: 57  GQGSSLLLYPKHKSRFRVNATAGQPEAFDSNSK--QKSFRDSL----DAFYRFSRPHTVI 110

Query: 123 SIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPH 182
             + ++LSVS L ++  +D +P L     + +V A+MMN Y   +NQL+DV IDKVNKP+
Sbjct: 111 GTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPY 170

Query: 183 LPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRW 242
           LPLA G++S+  G+AI  +  +M+  +G ++ S PL     +  ++G AYSI+L PLLRW
Sbjct: 171 LPLASGEYSVNTGIAIVASFSIMSFWLGWIVGSWPLFWALFVSFMLGTAYSINL-PLLRW 229

Query: 243 KGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNP 277
           K   L+AA+ I+++  +++   F++H Q  V G P
Sbjct: 230 KRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRP 264

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125598038|gb|EAZ37818.1| hypothetical protein OsJ_22157 [Oryza sativa Japonica Group]

 Score =  143 bits (360), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 75/188 (39%), Positives = 112/188 (59%), Gaps = 4/188 (2%)

Query: 93  ESELVSTSFMQVLN---KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIE 149
           + E ++T F ++     +K  AFYR  RP++    I  + SVSLLP+++  DFT K +  
Sbjct: 93  QHESIATEFEEICKEVPQKLGAFYRFCRPHTIFGTIIGITSVSLLPMRSLDDFTMKALWG 152

Query: 150 AFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAM 209
             + +  ++ MN Y   +NQL D+ IDKVNKP LPLA G+FS+  G  + + S +M++A+
Sbjct: 153 FLEALSSSLCMNIYVVGLNQLYDIQIDKVNKPSLPLASGEFSVATGAVLVLTSLIMSIAI 212

Query: 210 GIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHF 269
           GI  +S PL+    I   +G AYS+D  PLLRWK N  +AA  I+ +  +L+   FF H 
Sbjct: 213 GIRSKSAPLLCALFISFFLGSAYSVD-APLLRWKRNAFLAASCILFVRAVLVQLAFFAHM 271

Query: 270 QKIVLGNP 277
           Q+ VL  P
Sbjct: 272 QQHVLKRP 279

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.750	0.529	0.311	9.7e-25
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.620	0.422	0.300	1.1e-20
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.743	0.502	0.278	2.3e-20
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.588	0.414	0.258	6.9e-07

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 67/215 (31%), Positives = 108/215 (50%)

Query:    63 GHSEDLVINRNHKLLSKSTVALAAQDGYSSESELVSTSFMQVLNKKCDAFYRLTRPYSCX 122
             G    L++   HK   +        + + S S+    SF   L    DAFYR +RP++  
Sbjct:    57 GQGSSLLLYPKHKSRFRVNATAGQPEAFDSNSK--QKSFRDSL----DAFYRFSRPHTVI 110

Query:   123 XXXXXXXXXXXXPLQNPADFTPKLIIEAFKCMVPXXXXXXXXXXXXQLADVHIDKVNKPH 182
                          ++  +D +P L     + +V             QL+DV IDKVNKP+
Sbjct:   111 GTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPY 170

Query:   183 LPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRW 242
             LPLA G++S+  G+AI  +  +M+  +G ++ S PL     +  ++G AYSI+LP LLRW
Sbjct:   171 LPLASGEYSVNTGIAIVASFSIMSFWLGWIVGSWPLFWALFVSFMLGTAYSINLP-LLRW 229

Query:   243 KGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNP 277
             K   L+AA+ I+++  +++   F++H Q  V G P
Sbjct:   230 KRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRP 264

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 225 (84.3 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
 Identities = 52/173 (30%), Positives = 81/173 (46%)

Query:   105 LNKKCDAFYRLTRPYSCXXXXXXXXXXXXXPLQNPADFTPKLIIEAFKCMVPXXXXXXXX 164
             +N   D FY+  RPY+               ++  +D +    I   + +V         
Sbjct:   107 VNDALDTFYKFCRPYAIFSVVLGATFKSLVAVERLSDLSLAFFIGWLQVVVAVICIHIFD 166

Query:   165 XXXXQLADVHIDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFII 224
                 QL D+ IDK+NKP LPLA G+ S    + IT +S ++ +    ++ S PL     I
Sbjct:   167 VGLNQLCDIEIDKINKPDLPLASGNLSFRNVVIITASSLILGLGFAWIVGSWPLFWTVFI 226

Query:   225 WCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNP 277
              C+   AY++DLP LLRWK  P++ A++ I+   +     FF+H Q  V   P
Sbjct:   227 CCMFAAAYNVDLP-LLRWKKYPVLTAISFIANVAVTRSLGFFLHMQTCVFKRP 278

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 226 (84.6 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
 Identities = 58/208 (27%), Positives = 91/208 (43%)

Query:    71 NRNHKLLSKSTVALAAQDGYSSESELVST-SFMQVLNKKCDAFYRLTRPYSCXXXXXXXX 129
             N + +   K  V   ++  +  E +     S    +N   D FY+  RPY+         
Sbjct:    75 NTSKECEKKYVVNAISEQSFEYEPQTRDPESIWDSVNDALDIFYKFCRPYAMFTIVLGAT 134

Query:   130 XXXXXPLQNPADFTPKLIIEAFKCMVPXXXXXXXXXXXXQLADVHIDKVNKPHLPLACGD 189
                   ++  +D +    I   + +V             QL D+ IDK+NKP LPLA G 
Sbjct:   135 FKSLVAVEKLSDLSLAFFIGWLQVVVAVICIHIFGVGLNQLCDIEIDKINKPDLPLASGK 194

Query:   190 FSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMA 249
              S    + IT +S ++ +    ++ S PL     I C+V  AY++DLP LLRWK  P++ 
Sbjct:   195 LSFRNVVIITASSLILGLGFAWIVDSWPLFWTVFISCMVASAYNVDLP-LLRWKKYPVLT 253

Query:   250 AVTIISMNGLLLLFPFFIHFQKIVLGNP 277
             A+  I+   +     FF+H Q  V   P
Sbjct:   254 AINFIADVAVTRSLGFFLHMQTCVFKRP 281

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 6.9e-07, P = 6.9e-07
 Identities = 44/170 (25%), Positives = 75/170 (44%)

Query:   110 DAFYRLTRPYSCXXXXXXXXXXXXXPL-QNPADFTPKLIIEAFKCMVPXXXXXXXXXXXX 168
             +A +R  RP++               L +N       L+++A   ++             
Sbjct:    99 NACWRFLRPHTIRGTALGSTALVTRALIENTHLIKWSLVLKALSGLLALICGNGYIVGIN 158

Query:   169 QLADVHIDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIG-FIIWCI 227
             Q+ D+ IDKVNKP+LP+A GD S+     + I   +  + + +     P +   + +   
Sbjct:   159 QIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAIAGLLV-VGFNFGPFITSLYSLGLF 217

Query:   228 VGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNP 277
             +G  YS+  PPL R K  P+ A + I ++ G LL F  + H  +  LG P
Sbjct:   218 LGTIYSV--PPL-RMKRFPVAAFLIIATVRGFLLNFGVY-HATRAALGLP 263


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.137   0.415    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      277       252   0.00082  114 3  11 22  0.40    33
                                                     32  0.47    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  181 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.31u 0.09s 19.40t   Elapsed:  00:00:00
  Total cpu time:  19.31u 0.09s 19.40t   Elapsed:  00:00:00
  Start:  Fri May 10 22:04:28 2013   End:  Fri May 10 22:04:28 2013

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00032719001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (373 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00032449001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (502 aa)	•		•			•	•		0.961
	GSVIVG00023813001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (340 aa)						•	•		0.905
	GSVIVG00020095001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (340 aa)						•	•		0.905
	GSVIVG00015688001	SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (196 aa)						•	•		0.902
	GSVIVG00016328001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (467 aa)			•			•	•		0.850
	GSVIVG00027948001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (420 aa)						•	•		0.810
	GSVIVG00017359001	SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (466 aa)						•	•		0.804
	GSVIVG00019306001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (234 aa)			•						0.430
	GSVIVG00029773001	SubName- Full=Chromosome chr10 scaffold_50, whole genome shotgun sequence; (142 aa)			•						0.429
	GSVIVG00013955001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (345 aa)	•					•	•		0.420

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	277
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	1e-48
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	4e-22
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	5e-10
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	2e-07
PRK12884	279	PRK12884, ubiA, prenyltransferase; Reviewed	1e-06
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	3e-06
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	1e-04
PRK09573	279	PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylgly	5e-04

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  162 bits (411), Expect = 1e-48
 Identities = 64/150 (42%), Positives = 98/150 (65%), Gaps = 1/150 (0%)

Query: 128 LLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPLAC 187
           + SVSLL +++ +DF+P       + +VPA++MN Y   +NQL D+ IDKVNKP+LPLA 
Sbjct: 3   ITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLAS 62

Query: 188 GDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPL 247
           G+FS+  G+AI  +  +M+  MG ++ S PL     +  ++G AYSI+L PLLRWK + +
Sbjct: 63  GEFSVATGVAIVTSFAIMSFGMGWIVGSWPLFWALFVSFVLGTAYSINL-PLLRWKRSAV 121

Query: 248 MAAVTIISMNGLLLLFPFFIHFQKIVLGNP 277
            AA  I+++  +++   FF+H Q  VLG P
Sbjct: 122 AAASCILAVRAVVVQLAFFLHMQTHVLGRP 151

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score = 93.1 bits (232), Expect = 4e-22
 Identities = 56/169 (33%), Positives = 96/169 (56%), Gaps = 8/169 (4%)

Query: 111 AFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKL--IIEAFKCMVPAIMMNNYANAIN 168
           A ++ +RP++ +    ++L + L+ +   +  T  L  +       +  +  N Y   +N
Sbjct: 15  ALWKFSRPHTIIGTSLSVLGLYLIAI-AASSNTIALANLGLLLGAWIACLCGNVYIVGLN 73

Query: 169 QLADVHIDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIV 228
           QL D+ ID++NKPHLPLA G+FS  +G  I I + ++A+ +  +L  P L+I   I  ++
Sbjct: 74  QLTDIEIDRINKPHLPLAAGEFSRRQGQRIVIITGILALILAALL-GPWLLITVGISLLI 132

Query: 229 GGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNP 277
           G AYS  LPP +R K  PL+AA+ I ++ G+++    F+HFQ  +LG  
Sbjct: 133 GTAYS--LPP-IRLKRFPLLAALCIFTVRGVIVNLGLFLHFQW-LLGGS 177

Length = 308

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 58.3 bits (141), Expect = 5e-10
 Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 7/113 (6%)

Query: 157 AIMMNNYANAINQLADVHIDKV--NKPHLPLACGDFSMGEGLAITIASPLMAVAMGIMLR 214
            +++    N +N   D  ID    NKP  PL  G  S  E L + +A  L+ + + ++L 
Sbjct: 32  LLLLQAAGNVLNDYFDYEIDADNPNKPDRPLPSGRISPREALLLGLALLLLGLLLALLLG 91

Query: 215 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFI 267
              L++G +   ++G  YS    P LR K  PL+  + +    GLL+L   + 
Sbjct: 92  PLLLLLGLLGL-LLGLLYS----PPLRLKRRPLLGELVVGLAFGLLILLGAYA 139

Length = 259

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 10/120 (8%)

Query: 157 AIMMNNYANAINQLADVHIDKVNKP--HLPLACGDFSMGEGLAITIASPLMAVAMGIMLR 214
             +  +    IN LAD  ID++N    + PL  G  S+ E L + I   L+ +A+ ++L 
Sbjct: 56  FFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLN 115

Query: 215 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVL 274
               ++      ++  AY          K    +  + +    GL  L         + L
Sbjct: 116 PLAFLLSL-AALVLALAY-------PFLKRFTFLPQLVLGLAFGLGALAGAAAVGGSLPL 167

Length = 289

>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 33/161 (20%), Positives = 67/161 (41%), Gaps = 23/161 (14%)

Query: 108 KCDAFYRLTRP-----YSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNN 162
           K  A+  L RP          ++ A++++  LPL            EA    + A   + 
Sbjct: 3   KMKAYLELLRPEHGLMAGIAVVLGAIIALGGLPL-----------DEALLGFLTAFFASG 51

Query: 163 YANAINQLADVHIDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGF 222
            ANA+N   D  +D++N+P  P+  G  S  E L + I   ++ +    ++     ++  
Sbjct: 52  SANALNDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLISPLAFLVVI 111

Query: 223 IIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLF 263
           ++  ++G  Y+  L      K   L+  + +  + G+  +F
Sbjct: 112 LVS-VLGILYNWKL------KEYGLIGNLYVAFLTGMTFIF 145

Length = 279

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 159 MMNNYANAINQLADVHIDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPL 218
           +   ++ +IN   D  +D +N+P  P+  G  S+ E     +   +  + + ++L    L
Sbjct: 49  LGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLVALVL-GNWL 107

Query: 219 VIGFIIWCIVGGAYSIDLPPL-LR---WKGNPLMAA 250
           ++ F +  IV  A    +PP+ L+   W G P +  
Sbjct: 108 IVLFTVVGIV-LAVIYSMPPIKLKRNGWLGPPAVGL 142

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 17/115 (14%)

Query: 111 AFYRLTRPYSCV-----SIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYAN 165
            +  LTRP + V     + I A ++  +L   +                    +     N
Sbjct: 6   GYLELTRPVNAVVAGVAAFIGAFIAGGILSSPSLTGLA----------FAAVFLATGAGN 55

Query: 166 AINQLADVHIDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVI 220
           AIN   D  ID++N+P  P+  G  S    LA +I   L A  + +    PPL +
Sbjct: 56  AINDYFDREIDRINRPDRPIPSGAVSPRGALAFSIL--LFAAGVALAFLLPPLCL 108

Length = 276

>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 163 YANAINQLADVHIDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGF 222
             N IN + D+ IDK+NKP  P+  G  S+ E    +I        +G++L     +  F
Sbjct: 52  GGNVINDIYDIEIDKINKPERPIPSGRISLKEAKIFSIT----LFIVGLILSIFINIYAF 107

Query: 223 II 224
           +I
Sbjct: 108 LI 109

Length = 279

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	277
PLN02878	280	homogentisate phytyltransferase	99.97
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	99.96
PRK08238	479	hypothetical protein; Validated	99.91
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	99.9
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	99.88
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	99.88
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	99.88
PLN00012	375	chlorophyll synthetase; Provisional	99.88
PRK12882	276	ubiA prenyltransferase; Reviewed	99.88
PRK12884	279	ubiA prenyltransferase; Reviewed	99.87
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	99.87
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	99.87
PRK12874	291	ubiA prenyltransferase; Reviewed	99.86
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	99.86
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	99.86
PRK12392	331	bacteriochlorophyll c synthase; Provisional	99.85
PRK13106	300	ubiA prenyltransferase; Reviewed	99.85
PRK13362	306	protoheme IX farnesyltransferase; Provisional	99.85
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	99.85
PRK04375	296	protoheme IX farnesyltransferase; Provisional	99.84
PRK13595	292	ubiA prenyltransferase; Provisional	99.84
PRK12895	286	ubiA prenyltransferase; Reviewed	99.84
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.84
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	99.84
PRK12886	291	ubiA prenyltransferase; Reviewed	99.83
PRK05951	296	ubiA prenyltransferase; Reviewed	99.83
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.83
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	99.82
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.82
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	99.81
PRK12888	284	ubiA prenyltransferase; Reviewed	99.8
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.8
PRK12876	300	ubiA prenyltransferase; Reviewed	99.8
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	99.79
PRK12873	294	ubiA prenyltransferase; Reviewed	99.78
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.78
PLN02776	341	prenyltransferase	99.75
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	99.74
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.7
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.68
PRK12871	297	ubiA prenyltransferase; Reviewed	99.67
PLN02922	315	prenyltransferase	99.67
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.66
PRK13592	299	ubiA prenyltransferase; Provisional	99.66
PRK12875	282	ubiA prenyltransferase; Reviewed	99.6
PRK13105	282	ubiA prenyltransferase; Reviewed	99.58
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.57
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.57
PRK12872	285	ubiA prenyltransferase; Reviewed	99.57
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	99.51
PRK13591	307	ubiA prenyltransferase; Provisional	99.44
KOG1380	409	consensus Heme A farnesyltransferase [Coenzyme tra	99.17
KOG4581	359	consensus Predicted membrane protein [Function unk	97.55
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	94.61
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	94.11
PRK13591	307	ubiA prenyltransferase; Provisional	93.93
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	93.69
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	93.6
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	92.87
PLN02922	315	prenyltransferase	92.62
PRK12872	285	ubiA prenyltransferase; Reviewed	92.62
PLN00012	375	chlorophyll synthetase; Provisional	92.59
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	92.36
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	91.13
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	90.78
PRK13105	282	ubiA prenyltransferase; Reviewed	90.35
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	90.22
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	90.17
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	89.76
PRK12875	282	ubiA prenyltransferase; Reviewed	89.51
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	88.33
PRK05951	296	ubiA prenyltransferase; Reviewed	88.27
PRK12886	291	ubiA prenyltransferase; Reviewed	87.71
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	87.7
PRK13106	300	ubiA prenyltransferase; Reviewed	87.17
PRK12888	284	ubiA prenyltransferase; Reviewed	87.16
PRK12871	297	ubiA prenyltransferase; Reviewed	86.8
PRK12884	279	ubiA prenyltransferase; Reviewed	86.51
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	86.25
PRK12392	331	bacteriochlorophyll c synthase; Provisional	86.22
PRK12874	291	ubiA prenyltransferase; Reviewed	85.67
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	85.44
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	84.53
PRK12882	276	ubiA prenyltransferase; Reviewed	82.19
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	81.48
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	81.06
PRK12895	286	ubiA prenyltransferase; Reviewed	80.86
PRK12876	300	ubiA prenyltransferase; Reviewed	80.69

>PLN02878 homogentisate phytyltransferase

Probab=99.97  E-value=1.4e-31  Score=247.14  Aligned_cols=146  Identities=43%  Similarity=0.776  Sum_probs=134.2

Q ss_pred             HHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCcccCCccChHHHHHHHHHHHHHHHHHH
Q 037091          131 VSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMG  210 (277)
Q Consensus       131 g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrinkp~RPL~SG~IS~r~A~~l~~~ll~lgliLa  210 (277)
                      .+++|.+...+.++..+...+.++++++++|.+..++||++|+|+||+|||+||||||++|+++|..+..++.++|++++
T Consensus         6 ~~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la   85 (280)
T PLN02878          6 VSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMG   85 (280)
T ss_pred             HhHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            45666554456666667788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 037091          211 IMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNP  277 (277)
Q Consensus       211 ~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~g~~~~~~~~~~~~~  277 (277)
                      +..+++++.++++.+++++++||.++| |+|+||+++++++|+.+++|+++++|+|.|||++++++|
T Consensus        86 ~~~g~~~l~~al~~~~~lg~~YS~~lp-~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~  151 (280)
T PLN02878         86 WIVGSWPLFWALFVSFVLGTAYSINLP-LLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRP  151 (280)
T ss_pred             HHHChHHHHHHHHHHHHHHHHHHccCC-CcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCc
Confidence            999998888888767799999999889 999999999999999999999999999999999999975

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=99.96  E-value=2.6e-28  Score=228.97  Aligned_cols=172  Identities=28%  Similarity=0.505  Sum_probs=144.7

Q ss_pred             hhhHhHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCC-CChHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 037091           98 STSFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPAD-FTPKLIIEAFKCMVPAIMMNNYANAINQLADVHID  176 (277)
Q Consensus        98 ~~~~~~~~~~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~-~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiD  176 (277)
                      +++.+++..+.++.|++++|||+++++.++++.+++++.....+ .....+..++.++++..+++.+.+++||++|+|+|
T Consensus         2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD   81 (308)
T PRK12887          2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEID   81 (308)
T ss_pred             CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            35667788888999999999999999999998888776322111 11212334455566666677777779999999999


Q ss_pred             ccCCCCCcccCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHH
Q 037091          177 KVNKPHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISM  256 (277)
Q Consensus       177 rinkp~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~  256 (277)
                      ++|||+||++||++|+++++.+++++.++|+++++..|++.+.++++ +.+++++||.  | |+|+||+|++++++++++
T Consensus        82 ~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~~~~-~~~lg~~Ys~--p-P~rlKr~~~~~~~~i~~~  157 (308)
T PRK12887         82 RINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLITVGI-SLLIGTAYSL--P-PIRLKRFPLLAALCIFTV  157 (308)
T ss_pred             hcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHcC--C-chhhcccchhHHHHHHHH
Confidence            99999999999999999999999999999999999999887777775 8889999996  8 999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 037091          257 NGLLLLFPFFIHFQKIV  273 (277)
Q Consensus       257 ~g~lv~~g~~~~~~~~~  273 (277)
                      +|..+++|+|+|++...
T Consensus       158 ~g~i~~~g~~~~~~~~~  174 (308)
T PRK12887        158 RGVIVNLGLFLHFQWLL  174 (308)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999998654

>PRK08238 hypothetical protein; Validated

Probab=99.91  E-value=2.2e-24  Score=213.08  Aligned_cols=188  Identities=16%  Similarity=0.216  Sum_probs=151.9

Q ss_pred             ccCCcccccccccchhccccccccccCC--CCCcchhh--hhhHhHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhcCC
Q 037091           62 IGHSEDLVINRNHKLLSKSTVALAAQDG--YSSESELV--STSFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQ  137 (277)
Q Consensus        62 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~  137 (277)
                      +||+..     |+++|+.+..+..++++  +.++++..  +...+++.+.++++|++++|||+|.++++.++ +.+++..
T Consensus       145 vGDS~~-----Dlp~~~~A~~av~Vn~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~l~Rp~q~~kn~l~~~-p~l~a~~  218 (479)
T PRK08238        145 AGNSAA-----DLPVWAAARRAIVVGASPGVARAARALGPVERVFPPRPARLRTWLKALRVHQWAKNLLVFV-PLLAAHQ  218 (479)
T ss_pred             ecCCHH-----HHHHHHhCCCeEEECCCHHHHHHHHHcCCcceecCCCchHHHHHHHHhCCcHHHHHHHHHH-HHHHhcc
Confidence            699999     99999999999877554  44444332  55667777788999999999999999998755 5665532


Q ss_pred             CCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccC--CCCCcccCCccChHHHHHHHHHHHHHHHHHHHHhhH
Q 037091          138 NPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN--KPHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRS  215 (277)
Q Consensus       138 ~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrin--kp~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~  215 (277)
                       ..  ++..+..+++++++..++.+++|++||++|+|+||+|  ||+||+|||++|+++|+.++.+++++|+++++++|+
T Consensus       219 -~~--~~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~  295 (479)
T PRK08238        219 -FG--DLQALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALALGP  295 (479)
T ss_pred             -cC--ChHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhH
Confidence             11  3322335677888999999999999999999999998  789999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHHHH
Q 037091          216 PPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPF  265 (277)
Q Consensus       216 ~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~g~  265 (277)
                      .+.++.+ +++++.++||      +++||+++++.+++++.++.-+..|.
T Consensus       296 ~~~~~~~-~~~~~~~~Ys------~~lKr~~~~~~~~la~~~~lr~~~G~  338 (479)
T PRK08238        296 AFLLVLL-AYLALTLAYS------LRLKRKVLVDVLTLAALYTLRIIAGA  338 (479)
T ss_pred             HHHHHHH-HHHHHHHHhh------HHhcCCccccchHHHHHHHHHHHHHH
Confidence            6555544 5888899998      46999999999988887776555553

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=99.90  E-value=1.1e-22  Score=187.63  Aligned_cols=147  Identities=20%  Similarity=0.357  Sum_probs=127.5

Q ss_pred             HHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCcccC
Q 037091          108 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPLAC  187 (277)
Q Consensus       108 ~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrinkp~RPL~S  187 (277)
                      ++++|++++||+++...+++.+.|.+++.+.  ..++   ..+++++++++++++++|++|||+|+|+|++|+|+||+|+
T Consensus         2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~--~~~~---~~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~s   76 (279)
T PRK09573          2 SIKAYFELIRPKNCIGASIGAIIGYLIASNF--KIDL---KGIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPS   76 (279)
T ss_pred             CHHHHHHHHhHhHHHHHHHHHHHHHHHHccC--Ccch---HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCC
Confidence            3678999999999999999999998888431  2233   2356788999999999999999999999999999999999


Q ss_pred             CccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHHHHH
Q 037091          188 GDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFF  266 (277)
Q Consensus       188 G~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~g~~  266 (277)
                      |++|+++++.++.++.++++++++++|+++..++++ +.+++++||.      ++||++.++++.++...|..+..|..
T Consensus        77 G~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~-~~~~~~~Ys~------~lKr~~~~~~~~vg~~~G~~~~~g~~  148 (279)
T PRK09573         77 GRISLKEAKIFSITLFIVGLILSIFINIYAFLIALL-NSILLYLYAK------DLKKTGLIGNLIVAYLTGLSFIFGGL  148 (279)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHH------HHhcCCcHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988888886 6667889982      58999999999999999977666653

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=99.88  E-value=3e-22  Score=184.90  Aligned_cols=144  Identities=15%  Similarity=0.170  Sum_probs=119.7

Q ss_pred             HHHHhhhcchhHHHHHHHHHHHHHhcCCCCCC-CChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCcccCC
Q 037091          110 DAFYRLTRPYSCVSIIAALLSVSLLPLQNPAD-FTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPLACG  188 (277)
Q Consensus       110 ~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~-~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrinkp~RPL~SG  188 (277)
                      ++|++++||+++...+.++++|.+++....++ +++.  ..++.++++..++++++|++|||+|+|+|++|+|+||+++|
T Consensus         1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~--~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G   78 (283)
T TIGR01476         1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWW--LMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG   78 (283)
T ss_pred             CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHH--HHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence            35889999999999999999999887322222 3332  22444678899999999999999999999999999999999


Q ss_pred             ccChHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHH
Q 037091          189 DFSMGEGLAITIASPLMAVAMGIMLRSPP-LVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGL  259 (277)
Q Consensus       189 ~IS~r~A~~l~~~ll~lgliLa~~l~~~~-lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~  259 (277)
                      ++|++++..++.++.+++++++++++.+. ..++++ +++.+++||.  | |+++||+++++++.++...+.
T Consensus        79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~-~~~~~~~Ys~--~-p~~lk~~~~~g~~~vg~~~~~  146 (283)
T TIGR01476        79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVV-GIVLAVIYSM--P-PIKLKRNGWLGPPAVGLSYEG  146 (283)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhheecC--c-hhhhccCCCccHHHHHHHHHH
Confidence            99999999999999999999998887776 555554 7778999996  7 999999998898888876553

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=99.88  E-value=8.9e-22  Score=185.04  Aligned_cols=158  Identities=16%  Similarity=0.191  Sum_probs=126.2

Q ss_pred             HHHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChH-HHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCc
Q 037091          106 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPK-LIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLP  184 (277)
Q Consensus       106 ~~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~-~l~~~ll~lla~ll~~~a~~viND~~D~eiDrinkp~RP  184 (277)
                      +++++.|++++||+++..++++.++|.+.+..  .++... .+..++.+++++.++++++|++|||+|+|+|++|+|+||
T Consensus        24 ~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rp  101 (314)
T PRK07566         24 TSIWKARLQLMKPITWFPPMWAFLCGAVSSGA--FGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYRP  101 (314)
T ss_pred             chHHHHHHHHhCCcchHHHHHHHHHHHHHcCC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCCCC
Confidence            35678999999999999998888877776521  122211 111134456778889999999999999999999999999


Q ss_pred             ccCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHHH
Q 037091          185 LACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFP  264 (277)
Q Consensus       185 L~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~g  264 (277)
                      +++|++|+++++.++.++.++++++++.+|.+...++++ +++.+++||.  | |+++||++.++++.++...|.+...+
T Consensus       102 l~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~l~-~~~~~~~Yt~--g-P~~lK~~~~~g~i~vg~~~g~~~~~~  177 (314)
T PRK07566        102 IPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAALL-GLFLAWIYSA--P-PLRLKQNGWLGNYAVGLSYEGLPWWA  177 (314)
T ss_pred             CCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHH-HHHHHHHhcC--C-ccccccccchhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999899888777775 7777999997  7 89999999999998888776544333


Q ss_pred             HHHHH
Q 037091          265 FFIHF  269 (277)
Q Consensus       265 ~~~~~  269 (277)
                      -+..+
T Consensus       178 g~~~~  182 (314)
T PRK07566        178 GAAAF  182 (314)
T ss_pred             HHHHh
Confidence            33333

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=99.88  E-value=7.7e-22  Score=184.40  Aligned_cols=148  Identities=16%  Similarity=0.288  Sum_probs=119.1

Q ss_pred             HHHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccC--CCCC
Q 037091          106 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN--KPHL  183 (277)
Q Consensus       106 ~~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrin--kp~R  183 (277)
                      .+++++|++++|||+|.++++.+..+ +++...   .++..+...++++++..++++++|++||++|+|+||+|  ||+|
T Consensus         8 ~~~l~~~l~L~RP~~w~~nll~~~~~-~~a~~~---~~~~~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~R   83 (295)
T PRK12324          8 KNLLAGYLKLLRPKQWIKNLFVFAAP-IFAGNL---LNPGALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNR   83 (295)
T ss_pred             HHHHHHHHHHhCchHHHHHHHHHHHH-HHHHhh---cccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCC
Confidence            35688999999999999998865544 444221   11111234567777888899999999999999999996  7899


Q ss_pred             cccCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHH
Q 037091          184 PLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLF  263 (277)
Q Consensus       184 PL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~  263 (277)
                      |+|||++|+++|+.++.+++++|+++++++|+...++.+ +++++.++||      +++|++++++.+++++.+++-+..
T Consensus        84 PlasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~~~-~~~~~~~~Ys------~~lK~~~~~d~l~va~~~~lr~~~  156 (295)
T PRK12324         84 PIASGVVSVSLAYILAVVLLVASLALAYLLSPKLALVLL-VYLVLNLAYS------FKLKHQPVLDVFCIASGFVLRAIA  156 (295)
T ss_pred             CCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhh------HHhcCCchhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988887777655 4788889998      469999999999998876654444


Q ss_pred             H
Q 037091          264 P  264 (277)
Q Consensus       264 g  264 (277)
                      |
T Consensus       157 G  157 (295)
T PRK12324        157 G  157 (295)
T ss_pred             H
Confidence            4

>PLN00012 chlorophyll synthetase; Provisional

Probab=99.88  E-value=1.2e-21  Score=188.34  Aligned_cols=149  Identities=18%  Similarity=0.208  Sum_probs=119.3

Q ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHH---HHHHHHHHHHHHHHHHHHHHhhccccccccccCCC
Q 037091          105 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKL---IIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKP  181 (277)
Q Consensus       105 ~~~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~---l~~~ll~lla~ll~~~a~~viND~~D~eiDrinkp  181 (277)
                      ..++++.|++++||++|...++++++|....    +.+++..   ...++.++++..++++++|++|||+|+|+|++|+|
T Consensus        81 ~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~----g~~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~  156 (375)
T PLN00012         81 ETDIWKIRLQLTKPVTWPPLVWGVLCGAAAS----GNFHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEP  156 (375)
T ss_pred             chHHHHHHHHHhCHHHHHHHHHHHHHHHHHc----CCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCC
Confidence            3466889999999999999999988888843    2344321   11235667788899999999999999999999999


Q ss_pred             CCcccCCccChHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHH
Q 037091          182 HLPLACGDFSMGEGLAITIASPLMAVAMGIML-------RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTII  254 (277)
Q Consensus       182 ~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l-------~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~  254 (277)
                      +||+++|++|+++++.++.+++++++++++++       +++.++++++ +++++++||.  | |+++||+++++++.++
T Consensus       157 ~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~-gi~l~~~YS~--p-Pl~lKr~~~~G~v~lG  232 (375)
T PLN00012        157 YRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALG-GSLLSYIYSA--P-PLKLKQNGWIGNYALG  232 (375)
T ss_pred             CCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH-HHHHhhhhcC--C-chhhhHhccHhHHHHH
Confidence            99999999999999998888877777776654       3445556664 6777999997  7 9999999999998887


Q ss_pred             HHHHHHH
Q 037091          255 SMNGLLL  261 (277)
Q Consensus       255 ~~~g~lv  261 (277)
                      +..+.+.
T Consensus       233 ~~~~~lp  239 (375)
T PLN00012        233 ASYISLP  239 (375)
T ss_pred             HHHHHHH
Confidence            7776443

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=99.88  E-value=6.2e-22  Score=182.23  Aligned_cols=146  Identities=23%  Similarity=0.296  Sum_probs=123.8

Q ss_pred             HHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCcccC
Q 037091          108 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPLAC  187 (277)
Q Consensus       108 ~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrinkp~RPL~S  187 (277)
                      ++++|++++||+++..++++.+.|++++.+.   .++.  ..+++++++++++++++|++||++|+|+|++|+|+||+++
T Consensus         3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~---~~~~--~~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~   77 (276)
T PRK12882          3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGI---LSSP--SLTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS   77 (276)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHhccc---cchH--HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence            3688999999999999999999999988432   2221  1256788999999999999999999999999999999999


Q ss_pred             CccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHHHH
Q 037091          188 GDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPF  265 (277)
Q Consensus       188 G~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~g~  265 (277)
                      |++|+++++.++.++.++|+++++.+|+....++++ +.+++++||      .|+||++.++++.++...|....+|.
T Consensus        78 G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~~~-~~~~~~~Yt------~~lK~~~~~g~~~vg~~~g~~~~~g~  148 (276)
T PRK12882         78 GAVSPRGALAFSILLFAAGVALAFLLPPLCLAIALF-NSLLLVLYA------ETLKGTPGLGNASVAYLTGSTFLFGG  148 (276)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHH------HHHhcccchhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888888776 666788998      36999998999988887775544443

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=99.87  E-value=2.7e-21  Score=177.78  Aligned_cols=147  Identities=20%  Similarity=0.351  Sum_probs=126.4

Q ss_pred             HHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCccc
Q 037091          107 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPLA  186 (277)
Q Consensus       107 ~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrinkp~RPL~  186 (277)
                      +++++|++++||+++.+..++.+.|.++|.+   .+++   ..+++++++++++++++|++||++|+|+|++|+|+||++
T Consensus         2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~---~~~~---~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~   75 (279)
T PRK12884          2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALG---GLPL---DEALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP   75 (279)
T ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCC---CCch---HHHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence            3678999999999999999999999988853   2322   235677899999999999999999999999999999999


Q ss_pred             CCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHHHHH
Q 037091          187 CGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFF  266 (277)
Q Consensus       187 SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~g~~  266 (277)
                      +|++|+++++.++.++.++++++++.+|+....++++ +.++++.||.      ++||+++++++.++..+|.....|..
T Consensus        76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~Ys~------~lK~~~~~~~~~~~~~~~~~~~~g~~  148 (279)
T PRK12884         76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVVIL-VSVLGILYNW------KLKEYGLIGNLYVAFLTGMTFIFGGI  148 (279)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHH------hhccccchhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999899888887775 6777899983      58999999999999988866555543

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=99.87  E-value=4.5e-21  Score=179.69  Aligned_cols=152  Identities=18%  Similarity=0.279  Sum_probs=123.2

Q ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHH---HHHHHHHHHHHHHHHHHHHHhhccccccccccCCC
Q 037091          105 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKL---IIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKP  181 (277)
Q Consensus       105 ~~~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~---l~~~ll~lla~ll~~~a~~viND~~D~eiDrinkp  181 (277)
                      ..++++.|++++||+++...+++++.|...+    +++++..   ...++.+++++.++++++|++|||+|+|.|+.|+|
T Consensus        12 ~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~----~~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~   87 (306)
T TIGR02056        12 ETNIWKIRLQLMKPITWIPLIWGVVCGAAAS----GNFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINEP   87 (306)
T ss_pred             chhHHHHHHHHcChHhhHHHHHHHHHHHHHc----CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCC
Confidence            3456789999999999999999988888854    2344321   11234456778999999999999999999999999


Q ss_pred             CCcccCCccChHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHH
Q 037091          182 HLPLACGDFSMGEGLAITIASPLMAVAMGIMLR-------SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTII  254 (277)
Q Consensus       182 ~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l~-------~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~  254 (277)
                      +||+++|++|++++..+++++.++++++++++.       ++.+.++++ +++.+++||.  | |+++||+++++++.++
T Consensus        88 ~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~-~~~~~~~Yt~--g-P~~lk~~g~~G~i~vg  163 (306)
T TIGR02056        88 YRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALF-GSFIAFIYSA--P-PLKLKQNGWLGNFALG  163 (306)
T ss_pred             CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHH-HHHHHHHHcC--C-hhhhhhcccHHHHHHH
Confidence            999999999999999999999999988877653       445566665 7778999997  7 9999999999999888


Q ss_pred             HHHHHHHHHH
Q 037091          255 SMNGLLLLFP  264 (277)
Q Consensus       255 ~~~g~lv~~g  264 (277)
                      .+.+.....+
T Consensus       164 ~~~~~~~~~~  173 (306)
T TIGR02056       164 ASYIALPWWA  173 (306)
T ss_pred             HHHHHHHHHH
Confidence            8877554444

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=99.87  E-value=3.6e-21  Score=177.24  Aligned_cols=145  Identities=21%  Similarity=0.312  Sum_probs=121.8

Q ss_pred             HHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCcccCC
Q 037091          109 CDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPLACG  188 (277)
Q Consensus       109 l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrinkp~RPL~SG  188 (277)
                      +++|++++||+++....++.+.|++++.+   ..+.  +..+++++++.++.++++|++||++|+|+|++|+|+||+++|
T Consensus         3 l~~~~~l~Rp~~~~~~~~~~~~G~~la~~---~~~~--~~~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG   77 (277)
T PRK12883          3 LKAFIEITRPHNCILAGIVGILGSLVALG---GIPP--IKTLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRG   77 (277)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHcC---CCCc--HHHHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCCC
Confidence            67899999999999999988889888743   2221  112456677888889999999999999999999999999999


Q ss_pred             ccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHHHH
Q 037091          189 DFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPF  265 (277)
Q Consensus       189 ~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~g~  265 (277)
                      ++|++++..++.++.++|+++++.+|++.+.++++ +.+++++|+.      ++|+++.+++..++...|.....|.
T Consensus        78 ~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~~~-~~~~~~~Y~~------~~k~~~~lg~~~vg~~~g~~~~~g~  147 (277)
T PRK12883         78 AMSRKAALYYSLLLFAVGLALAYLINIEAFLFALG-AYVLMFLYAW------KLKPLPFIGNVVVALLTGATPIYGA  147 (277)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhh------cccCCcchhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888888776 6677999983      5889888899988888886554554

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=99.86  E-value=1.2e-20  Score=175.89  Aligned_cols=152  Identities=19%  Similarity=0.224  Sum_probs=126.6

Q ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHHHhcCCC---CCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC-
Q 037091          105 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQN---PADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK-  180 (277)
Q Consensus       105 ~~~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~---~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrink-  180 (277)
                      ..+++++|++++||++.++++...+.|.++|...   .+..++   ..+++++++++++++++|++|||+|+|+|++|+ 
T Consensus         4 ~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~---~~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~R   80 (291)
T PRK12874          4 FTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGF---KLLILGILAAVSARNFAMAFNRLVDRDIDKDNPR   80 (291)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCH---HHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCC
Confidence            4567899999999999999998888888887421   122343   235778899999999999999999999999996 


Q ss_pred             -CCCcccCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHH
Q 037091          181 -PHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGL  259 (277)
Q Consensus       181 -p~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~  259 (277)
                       |+||+|+|++|+++|..+..++.++++++++.+|+++..+++. .+++...|+.       +||++.++.+.+++..|.
T Consensus        81 T~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~~~-~~~~~~~Y~~-------~KR~t~~~~~~~g~~~~~  152 (291)
T PRK12874         81 TANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLSFP-FLIVLGGYSY-------FKRFSSLAHLVLGLSLGL  152 (291)
T ss_pred             CCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHhh-------hcccccccHHHHHHHHHH
Confidence             7999999999999999999999998888888889988888764 6777889983       899999999999998887


Q ss_pred             HHHHHHHH
Q 037091          260 LLLFPFFI  267 (277)
Q Consensus       260 lv~~g~~~  267 (277)
                      ....|...
T Consensus       153 ~~l~G~~a  160 (291)
T PRK12874        153 APIAGVVA  160 (291)
T ss_pred             HHHHHHHH
Confidence            76666443

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=99.86  E-value=1.1e-20  Score=175.10  Aligned_cols=151  Identities=21%  Similarity=0.238  Sum_probs=121.9

Q ss_pred             HHHHHHHHhhhcchhH---HHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCC-
Q 037091          106 NKKCDAFYRLTRPYSC---VSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKP-  181 (277)
Q Consensus       106 ~~~l~~~l~l~RP~~~---~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrinkp-  181 (277)
                      +++++.+.+++|++++   .....+...+..++.   ..++.  +...++++++++++++++|++||++|+|+||+|+| 
T Consensus         7 ~~~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~---~~~~~--~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt   81 (289)
T COG0382           7 PNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAA---SGLPS--LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRT   81 (289)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---cCCch--HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCc
Confidence            3445555555555554   444445555555553   12222  34577889999999999999999999999999987 


Q ss_pred             -CCcccCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHH
Q 037091          182 -HLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLL  260 (277)
Q Consensus       182 -~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~l  260 (277)
                       +||+|||++|+++|+.+.++++++++++++.+|++++++++. +.++.++|.       ++||+++++.++++.+++..
T Consensus        82 ~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~~~-~~~l~~~Y~-------~~Kr~~~~~~~~lg~~~~~~  153 (289)
T COG0382          82 KNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSLA-ALVLALAYP-------FLKRFTFLPQLVLGLAFGLG  153 (289)
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHH-------HhhcCCchHHHHHHHHHHHH
Confidence             999999999999999999999999999999999988777775 888899994       49999999999999999988


Q ss_pred             HHHHHHHHH
Q 037091          261 LLFPFFIHF  269 (277)
Q Consensus       261 v~~g~~~~~  269 (277)
                      +..|.....
T Consensus       154 ~~~g~~a~~  162 (289)
T COG0382         154 ALAGAAAVG  162 (289)
T ss_pred             HHHHHHHHh
Confidence            888876654

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=99.86  E-value=2.3e-20  Score=172.70  Aligned_cols=148  Identities=17%  Similarity=0.203  Sum_probs=116.1

Q ss_pred             HHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC--CCCccc
Q 037091          109 CDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PHLPLA  186 (277)
Q Consensus       109 l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrink--p~RPL~  186 (277)
                      +++|++++||++.....++.+.|.+++.+  ...++.   .+++++++.+++++++|++|||+|+|+|++|+  |+||+|
T Consensus         2 ~~~~~~l~rp~~~~~~~~~~~~g~~la~~--~~~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~   76 (279)
T PRK12869          2 IKAYLKLLKPRVIWLLDLAAVAGYFLAAK--HGVSWL---PLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTP   76 (279)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHhcc--CCCCHH---HHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcC
Confidence            57899999999999999999999988843  223432   35677889999999999999999999999986  799999


Q ss_pred             CCccChHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHHHH
Q 037091          187 CGDFSMGEGLAITIASPLMAVAMGIM-LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPF  265 (277)
Q Consensus       187 SG~IS~r~A~~l~~~ll~lgliLa~~-l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~g~  265 (277)
                      +|++|+++|..++.+++++|++++++ +|+.+.....++.+++.++||      .++||++.. +..++..-|.+.++|-
T Consensus        77 sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt------~~lKr~~~~-~~~v~~~~g~~~~l~g  149 (279)
T PRK12869         77 VGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYT------IWLKPRTWL-NIVIGGFAGNAAALAG  149 (279)
T ss_pred             CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC------cccccCChH-HHHHHHHHHHHHHHHH
Confidence            99999999999999999999999887 887765443444567788898      359999975 4444444444444444


Q ss_pred             HHH
Q 037091          266 FIH  268 (277)
Q Consensus       266 ~~~  268 (277)
                      |.+
T Consensus       150 ~~a  152 (279)
T PRK12869        150 YAS  152 (279)
T ss_pred             HHH
Confidence            444

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=99.85  E-value=4.4e-20  Score=175.05  Aligned_cols=155  Identities=20%  Similarity=0.296  Sum_probs=112.9

Q ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCC-CCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCC
Q 037091          105 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNP-ADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHL  183 (277)
Q Consensus       105 ~~~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~-~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrinkp~R  183 (277)
                      ..+++|+|++++||++++ ..++.+.|.++|.+.. ..+... ...+...++...+..++++++|||+|+|+|++|+|+|
T Consensus         8 ~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~-~l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtR   85 (331)
T PRK12392          8 FVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDY-LLLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTR   85 (331)
T ss_pred             hhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHH-HHHHHHHHHHHHHHHHHHhHHhcceeecccccCCCCC
Confidence            445689999999999888 5556666766774311 111111 1011222333345567789999999999999999999


Q ss_pred             cccCCccChHHHHHHHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHH
Q 037091          184 PLACGDFSMGEGLAITIASPLMAVAMGIMLRS-------PPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISM  256 (277)
Q Consensus       184 PL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~-------~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~  256 (277)
                      |+++|++|+++++.+.+++.+++++++++++.       +..++..+.+++++++||.  | |+++||++++++..+++.
T Consensus        86 pl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~--~-P~~lKr~~~~g~~~vGl~  162 (331)
T PRK12392         86 PIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSA--P-PLKLKKNILTSAPAVGFS  162 (331)
T ss_pred             CCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcC--C-chhhhccchhHHHHHHHH
Confidence            99999999999999999999999888876542       2223322346778999997  7 999999998888888888


Q ss_pred             HHHHHHHH
Q 037091          257 NGLLLLFP  264 (277)
Q Consensus       257 ~g~lv~~g  264 (277)
                      ++.....+
T Consensus       163 ~~~~~~~~  170 (331)
T PRK12392        163 YGFITFLS  170 (331)
T ss_pred             HHHHHHHH
Confidence            87544433

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=99.85  E-value=2.8e-20  Score=174.30  Aligned_cols=149  Identities=16%  Similarity=0.191  Sum_probs=123.6

Q ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccC--CCC
Q 037091          105 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN--KPH  182 (277)
Q Consensus       105 ~~~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrin--kp~  182 (277)
                      ..+++++|++++||++..+.+.+.+.|.++|.+.  ..++.   .+++.+++++++++++|++||++|+|+|++|  +|+
T Consensus        11 ~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~--~~~~~---~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~   85 (300)
T PRK13106         11 TRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKG--IPPIS---TLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKN   85 (300)
T ss_pred             hHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCC--CCCHH---HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCC
Confidence            4457999999999999999988888899888532  22332   3567889999999999999999999999998  579


Q ss_pred             CcccCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHH
Q 037091          183 LPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLL  262 (277)
Q Consensus       183 RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~  262 (277)
                      ||+|+|++|++||..+..++.+.+++++..+|+.+..++.+ ..++...|+.       +||++.++++.++++.|..+.
T Consensus        86 RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~~-~~~~~~~Y~~-------~KR~t~~~~~~lg~~~~~~~~  157 (300)
T PRK13106         86 RPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSPI-VALIAMSYPY-------MKRYTAFANYHLASIQGLAVF  157 (300)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHhH-------HhcCCcchHHHHHHHHHHHHH
Confidence            99999999999999998888888888888889988888775 5566778872       899999999999998876655


Q ss_pred             HHHH
Q 037091          263 FPFF  266 (277)
Q Consensus       263 ~g~~  266 (277)
                      .|..
T Consensus       158 ~G~~  161 (300)
T PRK13106        158 SGAV  161 (300)
T ss_pred             HHHH
Confidence            5553

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=99.85  E-value=4.2e-20  Score=173.46  Aligned_cols=151  Identities=14%  Similarity=0.183  Sum_probs=122.0

Q ss_pred             HHHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC--CCC
Q 037091          106 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PHL  183 (277)
Q Consensus       106 ~~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrink--p~R  183 (277)
                      .+++++|++++||+++..+.++.+.|.+++..  +..++.   .++++++++.++++++|++||++|+|+|+.|+  ++|
T Consensus        10 ~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~--~~~~~~---~~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~R   84 (306)
T PRK13362         10 EASLKDYIQVTKPGIIFGNVISVAGGFFLASK--GHVDPV---LMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNR   84 (306)
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcc--CCCCHH---HHHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCC
Confidence            34678999999999999999999999998842  234443   24567789999999999999999999999764  689


Q ss_pred             cccCCccChHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHH
Q 037091          184 PLACGDFSMGEGLAITIASPLMAVAMGI-MLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLL  262 (277)
Q Consensus       184 PL~SG~IS~r~A~~l~~~ll~lgliLa~-~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~  262 (277)
                      |+|+|++|+++|..+++++.++|+.++. +.|+....++.++.+++..+||      .++||++.++.+..++.+|+-..
T Consensus        85 PlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt------~~lKr~t~~~~~vgg~~ga~p~l  158 (306)
T PRK13362         85 VTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYS------LYLKRNSVYGTLVGSLSGAMPPV  158 (306)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh------HHHhccCcHhHHHHHHHHHHHHH
Confidence            9999999999999999999999988654 5677766666554555678898      35999999988888887776666


Q ss_pred             HHHHH
Q 037091          263 FPFFI  267 (277)
Q Consensus       263 ~g~~~  267 (277)
                      .|...
T Consensus       159 ~G~~a  163 (306)
T PRK13362        159 VGYCA  163 (306)
T ss_pred             HHHHH
Confidence            66544

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=99.85  E-value=2.5e-20  Score=172.15  Aligned_cols=145  Identities=19%  Similarity=0.159  Sum_probs=122.5

Q ss_pred             HHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccC--CCCCccc
Q 037091          109 CDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN--KPHLPLA  186 (277)
Q Consensus       109 l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrin--kp~RPL~  186 (277)
                      ++.|++++||++..+.......|.++|...  ..++.   .+++++++++++++++|++||++|+|+|++|  +|+||+|
T Consensus         2 ~~~~~~L~r~~~~~~~~~~~~~g~~la~~~--~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~   76 (282)
T TIGR01475         2 FKDILELIKFEHTVFALPFAYAGALLAAKG--LPGLK---TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLV   76 (282)
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHhcCC--CCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCC
Confidence            678999999999999888878788887432  23432   3567889999999999999999999999998  6899999


Q ss_pred             CCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHHHHH
Q 037091          187 CGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFF  266 (277)
Q Consensus       187 SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~g~~  266 (277)
                      +|++|+++|..+..++.++++++++.+|.++..++.+ +.++++.|+.       +||++.++.+.++...|..+..|+.
T Consensus        77 sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~Y~~-------~Kr~~~~~~~~~g~~~~~~~~~g~~  148 (282)
T TIGR01475        77 SGLISKKEARTMIILSLALFLSASYFLNPLAFILSPL-VLLVLIIYPY-------TKRFTFLCHYVLGSTYGLAPLAGWV  148 (282)
T ss_pred             CCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHhh-------HhccccccHHHHHHHHHHHHHHHHH
Confidence            9999999999999998888888888899888877775 5666888982       8999999999999988876666643

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=99.84  E-value=4.9e-20  Score=171.79  Aligned_cols=140  Identities=16%  Similarity=0.127  Sum_probs=112.8

Q ss_pred             HHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC--CCCc
Q 037091          107 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PHLP  184 (277)
Q Consensus       107 ~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrink--p~RP  184 (277)
                      +++++|++++||+++....++.+.|.++|.+  ...++.   .+++++++++++++++|++|||+|+|+|++|+  |+||
T Consensus         8 ~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~--~~~~~~---~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rp   82 (296)
T PRK04375          8 ATLKDYLALTKPRVISLNLFTALGGMLLAPP--GVPPLL---LLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRP   82 (296)
T ss_pred             hhHHHHHHHhHHHHHHHHHHHHHHHHHHhcC--CCCCHH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCC
Confidence            4688999999999999999999999998853  223432   35678899999999999999999999999986  7999


Q ss_pred             ccCCccChHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHH
Q 037091          185 LACGDFSMGEGLAITIASPLMAVAMGIM-LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNG  258 (277)
Q Consensus       185 L~SG~IS~r~A~~l~~~ll~lgliLa~~-l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g  258 (277)
                      +|+|++|+++|..++.++.++|++++++ .|+.+..+++++.+.+..+||      .++||++ +++..++...|
T Consensus        83 l~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys------~~lKr~~-~~~~~v~~~~g  150 (296)
T PRK04375         83 LVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYT------LWLKRRT-PQNIVIGGAAG  150 (296)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc------cchhcCC-ccchHHHHHHH
Confidence            9999999999999999999999988754 577666666653344567897      2599998 45555554444

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.84  E-value=7.2e-20  Score=170.74  Aligned_cols=141  Identities=18%  Similarity=0.197  Sum_probs=115.2

Q ss_pred             HHHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCcc
Q 037091          106 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPL  185 (277)
Q Consensus       106 ~~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrinkp~RPL  185 (277)
                      ...++.+++.+||.+|+.+..++.+|.+.+.+   .+++. ...++++++..+..+.+.|++|||+|+|+|++|+|+||+
T Consensus         9 ~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~---~~~~~-~~~~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~i   84 (292)
T PRK13595          9 LLPLRRLLLISRPALWVNTVGTLVTGVWLTGH---LYTLD-PGVLPLLLYLTLPFNLLIYGLNDLADRETDAASPRKGGW   84 (292)
T ss_pred             hhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC---cccch-hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCC
Confidence            34577899999999999999999999977632   34431 012456677788899999999999999999999999999


Q ss_pred             cCCccChHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHH
Q 037091          186 ACGDFSMGEGLAITIASPLM----AVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTII  254 (277)
Q Consensus       186 ~SG~IS~r~A~~l~~~ll~l----gliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~  254 (277)
                      ++|++|++++..+..++.++    ++++++..+++...+.++ +.+++++||.  | |+|+|++|+++++|..
T Consensus        85 ~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~~v-~~~l~~~YS~--p-PlRlK~rp~l~~l~~~  153 (292)
T PRK13595         85 QGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLLLL-YAALFVGYSL--P-PLRFKARPFLDGLSNA  153 (292)
T ss_pred             CcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHcc--C-ccchhcCcchhHHHHH
Confidence            99999999999876655544    456677788877777665 7889999997  7 9999999999999874

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=99.84  E-value=3.5e-20  Score=172.61  Aligned_cols=148  Identities=16%  Similarity=0.146  Sum_probs=120.1

Q ss_pred             HHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccC--CCCCcc
Q 037091          108 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN--KPHLPL  185 (277)
Q Consensus       108 ~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrin--kp~RPL  185 (277)
                      +++.|++++||++....+...+.|.++|.+.  ..++.   .+++.+++++++++++|++||++|+|+|++|  +|+||+
T Consensus         2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~--~~~~~---~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL   76 (286)
T PRK12895          2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGH--YIHPI---KILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL   76 (286)
T ss_pred             cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCC--CCCHH---HHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence            4678999999999888888888898888532  12322   3456677889999999999999999999999  579999


Q ss_pred             cCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHHHH
Q 037091          186 ACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPF  265 (277)
Q Consensus       186 ~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~g~  265 (277)
                      |+|++|++||+.+.++++++++++++.+|+.++.++.+ ...+...|+       .+||++.+..+.++.+.|. -+++-
T Consensus        77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~~-~~~l~~~yp-------~~KR~t~~~~~~lG~~~g~-~~l~g  147 (286)
T PRK12895         77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSPI-VIFLFIIDP-------FLKRYTAWRHIYMGSIIGL-GVLAG  147 (286)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHH-------HHHhCccccHHHHHHHHHh-HHHHH
Confidence            99999999999999999999999999999998887775 555555454       3899999999888888884 44444


Q ss_pred             HHHH
Q 037091          266 FIHF  269 (277)
Q Consensus       266 ~~~~  269 (277)
                      |.++
T Consensus       148 ~~Av  151 (286)
T PRK12895        148 YLAV  151 (286)
T ss_pred             HHHH
Confidence            4444

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.84  E-value=8.4e-20  Score=169.07  Aligned_cols=150  Identities=20%  Similarity=0.214  Sum_probs=120.1

Q ss_pred             HHHHHHHHHhhhcchhHHH---HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC-
Q 037091          105 LNKKCDAFYRLTRPYSCVS---IIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK-  180 (277)
Q Consensus       105 ~~~~l~~~l~l~RP~~~~~---~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrink-  180 (277)
                      +++++++|++++||+++.+   ..++.+.|.++|... ...++   ..+++++++++++++++|++|||+|+|+|+.|+ 
T Consensus         3 ~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~-~~~~~---~~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~R   78 (285)
T PRK12847          3 ILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHS-LLPDI---SLLVLFIIGSVLMRSAGCIINDIFDRKIDKHVAR   78 (285)
T ss_pred             hHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCc-cCCcH---HHHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCc
Confidence            4567899999999998765   456777788887432 11333   235678889999999999999999999999764 


Q ss_pred             -CCCcccCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHH
Q 037091          181 -PHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGL  259 (277)
Q Consensus       181 -p~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~  259 (277)
                       ++||+|+|++|++++..+..++.++++++++.+|+..+.++++ +.+.++.||.       .||++.++.+.++...+.
T Consensus        79 t~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~-~~~~~~~Y~~-------~Kr~~~~~~~~~g~~~~~  150 (285)
T PRK12847         79 TKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLSFI-AVILIVLYPL-------MKRFFYWPQLFLGFTFNM  150 (285)
T ss_pred             ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHhccc-------cccCCcccHHHHHHHHHH
Confidence             6899999999999999999999999999998899888888886 6677889983       788887888877777775


Q ss_pred             HHHHHHH
Q 037091          260 LLLFPFF  266 (277)
Q Consensus       260 lv~~g~~  266 (277)
                      -+..|+.
T Consensus       151 ~~l~~~~  157 (285)
T PRK12847        151 GILMAFA  157 (285)
T ss_pred             HHHHHHH
Confidence            4444433

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=99.84  E-value=8e-20  Score=168.69  Aligned_cols=148  Identities=20%  Similarity=0.209  Sum_probs=114.0

Q ss_pred             HHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC--CCCcccC
Q 037091          110 DAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PHLPLAC  187 (277)
Q Consensus       110 ~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrink--p~RPL~S  187 (277)
                      |+|++++||+++....++.+.|.++|.+. ...++.   .+++++++++++++++|++|||+|+|+|++|+  |+||+|+
T Consensus         1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~-~~~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s   76 (280)
T TIGR01473         1 KDYLQLTKPRIISLLLITAFAGMWLAPGG-ALVNPP---LLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT   76 (280)
T ss_pred             CchHHHccHHHHHHHHHHHHHHHHHhCCC-CCCCHH---HHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence            36899999999999999999999998532 123432   35678899999999999999999999999975  7999999


Q ss_pred             CccChHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHHHHH
Q 037091          188 GDFSMGEGLAITIASPLMAVAM-GIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFF  266 (277)
Q Consensus       188 G~IS~r~A~~l~~~ll~lgliL-a~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~g~~  266 (277)
                      |++|++++..++.++.++|+.+ ++..|+....+++++.++++++||.  +    +||++.+..+. +...|.+.+++-|
T Consensus        77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~~~~~~~~~~Yt~--~----lKr~~~~~~~v-~~~~g~~~~l~g~  149 (280)
T TIGR01473        77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLGLFGIFFYVIVYTI--W----LKRRTPQNTVI-GGFAGAVPPLIGW  149 (280)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCh--h----hccCCchhHHH-HHHHHHHHHHHHH
Confidence            9999999999999999999884 4458888777777633345889984  3    89988764444 4444434444434


Q ss_pred             HH
Q 037091          267 IH  268 (277)
Q Consensus       267 ~~  268 (277)
                      .+
T Consensus       150 ~a  151 (280)
T TIGR01473       150 AA  151 (280)
T ss_pred             HH
Confidence            33

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=99.83  E-value=9.8e-20  Score=169.72  Aligned_cols=149  Identities=17%  Similarity=0.064  Sum_probs=120.4

Q ss_pred             HHHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC--CCC
Q 037091          106 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PHL  183 (277)
Q Consensus       106 ~~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrink--p~R  183 (277)
                      .+++++|++++||++......+.+.|.++|...  ..++   ..+++..++.+++++++|++|||+|+|+|++|+  ++|
T Consensus         5 ~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~--~~~~---~~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~R   79 (291)
T PRK12886          5 LTKLKVFLEMIKFSHTLFALPFAGIGAVLAALG--LPGA---SQLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGR   79 (291)
T ss_pred             HHHHHHHHHHhCccchHHHHHHHHHHHHHhccC--CCCH---HHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCC
Confidence            467889999999999999888888898888432  1222   235677889999999999999999999999997  689


Q ss_pred             cccCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHH
Q 037091          184 PLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLF  263 (277)
Q Consensus       184 PL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~  263 (277)
                      |+|+|++|+++|..+.+.+.+.++++++.+|+++..++++ ..++...|+.       +||++.++.+..++.+|.....
T Consensus        80 PL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~~-~~~~~~~Y~~-------~Kr~t~~~~~~~g~~~~~~~l~  151 (291)
T PRK12886         80 AIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSPP-ALFFLLLYSY-------CKRFTALAHVVLGFCLALAPLG  151 (291)
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhh-------hhccccccHHHHHHHHHHHHHH
Confidence            9999999999999987777777777777889988888775 5666889983       7999999988888887755444


Q ss_pred             HHHHH
Q 037091          264 PFFIH  268 (277)
Q Consensus       264 g~~~~  268 (277)
                      | |.+
T Consensus       152 g-~~a  155 (291)
T PRK12886        152 A-WIA  155 (291)
T ss_pred             H-HHH
Confidence            4 444

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=99.83  E-value=1.2e-19  Score=169.27  Aligned_cols=155  Identities=15%  Similarity=0.179  Sum_probs=126.2

Q ss_pred             HHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccccc--ccccCC---C
Q 037091          107 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVH--IDKVNK---P  181 (277)
Q Consensus       107 ~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~e--iDrink---p  181 (277)
                      ++++.+++.+||++...++.+++.|.++|....+++++.   .+++++++++++++++|.+|||+|+|  .|+.++   |
T Consensus         2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~   78 (296)
T PRK05951          2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPL---LGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYR   78 (296)
T ss_pred             ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCC
Confidence            357899999999999999999999999885432456654   36788899999999999999999955  555422   7


Q ss_pred             CCcccCCccChHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHH
Q 037091          182 HLPLACGDFSMGEGLAITIASPLMAVAMGIM----LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMN  257 (277)
Q Consensus       182 ~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~----l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~  257 (277)
                      +||+++|++|++++..+..++.++++.++..    .+.+.+.++++ +++.++.||.  | |+++|+++ +|++.++...
T Consensus        79 ~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~~~-~~~~~~~Yt~--~-P~~lky~g-lGe~~v~~~~  153 (296)
T PRK05951         79 QHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLALL-GVFLWTCYMG--P-PFFLKYRW-LGEHLVFYAW  153 (296)
T ss_pred             CCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH-HHHHHHHHcC--C-CcccCCCC-chHHHHHHHH
Confidence            8999999999999999999887777655432    35455666654 8889999997  7 89999887 9999999999


Q ss_pred             HHHHHHHHHHHH
Q 037091          258 GLLLLFPFFIHF  269 (277)
Q Consensus       258 g~lv~~g~~~~~  269 (277)
                      |+++.+|.++..
T Consensus       154 g~~~vlg~~~~~  165 (296)
T PRK05951        154 SHMLVMGLIYVW  165 (296)
T ss_pred             HHHHHHHHHHHH
Confidence            998888887653

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.83  E-value=8.4e-20  Score=170.02  Aligned_cols=148  Identities=18%  Similarity=0.115  Sum_probs=118.9

Q ss_pred             HHHHHHHHhhhcchhHHHHH---HHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC--
Q 037091          106 NKKCDAFYRLTRPYSCVSII---AALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--  180 (277)
Q Consensus       106 ~~~l~~~l~l~RP~~~~~~l---l~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrink--  180 (277)
                      ++++++|++++||+++.++.   ++.+.|.++|.+.  ..++.   .+++++++++++++++|++||++|+|+|+.|+  
T Consensus         6 ~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~--~~~~~---~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt   80 (290)
T PRK12870          6 EPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHG--LPPLP---LVGIIILGALATSAAGCVVNDLWDRDIDPQVERT   80 (290)
T ss_pred             chhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccC--CCCHH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCcc
Confidence            45788999999999876665   5777788777432  23332   35677889999999999999999999998754  


Q ss_pred             CCCcccCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHH
Q 037091          181 PHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLL  260 (277)
Q Consensus       181 p~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~l  260 (277)
                      ++||+|+|++|++||..+..++.++++++++.+|+.++.+++. +.++.+.|+.       .||++.++.+.++..+|..
T Consensus        81 ~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~-~~~~~~~Y~~-------~KR~t~~~~~~lg~~~~~~  152 (290)
T PRK12870         81 RFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCVA-AVPVIFLYPL-------AKRVFPVPQLVLAIAWGFA  152 (290)
T ss_pred             cCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHhhh-------hhhccccceeeehHHHHhH
Confidence            4899999999999999999999999999999999988888876 6667889983       6777777777777777765


Q ss_pred             HHHHHH
Q 037091          261 LLFPFF  266 (277)
Q Consensus       261 v~~g~~  266 (277)
                      +..|+.
T Consensus       153 ~l~g~~  158 (290)
T PRK12870        153 VLISWS  158 (290)
T ss_pred             HHHHHH
Confidence            555543

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=99.82  E-value=2.6e-19  Score=165.79  Aligned_cols=148  Identities=20%  Similarity=0.157  Sum_probs=116.7

Q ss_pred             HHHHHHHhhhcchhHHHHH---HHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC--C
Q 037091          107 KKCDAFYRLTRPYSCVSII---AALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--P  181 (277)
Q Consensus       107 ~~l~~~l~l~RP~~~~~~l---l~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrink--p  181 (277)
                      +++++|++++|+|++..+.   ++.+.|.++|...  ..++.   .+++++++.+++++++|++||++|+|+|+.|+  |
T Consensus         3 ~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~--~~~~~---~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~   77 (282)
T PRK12848          3 NRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADG--IPDLW---VLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRTK   77 (282)
T ss_pred             hhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCC--CCCHH---HHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCCC
Confidence            4688999999977665444   4566677777432  22322   35667788899999999999999999999764  6


Q ss_pred             CCcccCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHH
Q 037091          182 HLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLL  261 (277)
Q Consensus       182 ~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv  261 (277)
                      +||+|+|++|+++|..++.++.++++++++.+|+....++++ ++++.++|+.       .||++.++.+.+++..|..+
T Consensus        78 ~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~-~~~~~~~Y~~-------~Kr~~~~~~~~~g~~~g~~~  149 (282)
T PRK12848         78 NRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLSVA-ALALAWIYPF-------MKRYTHLPQVVLGAAFGWGI  149 (282)
T ss_pred             CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHh-------HHhcCcccHHHHHHHHHHHH
Confidence            899999999999999999999999999998899888888775 6667888963       67877788887788888666


Q ss_pred             HHHHHH
Q 037091          262 LFPFFI  267 (277)
Q Consensus       262 ~~g~~~  267 (277)
                      ..|+..
T Consensus       150 ~~g~~a  155 (282)
T PRK12848        150 PMAFAA  155 (282)
T ss_pred             HHHHHH
Confidence            666544

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=99.82  E-value=4.2e-19  Score=164.49  Aligned_cols=149  Identities=18%  Similarity=0.200  Sum_probs=120.9

Q ss_pred             HHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccc--cccc--cCCCCCc
Q 037091          109 CDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADV--HIDK--VNKPHLP  184 (277)
Q Consensus       109 l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~--eiDr--inkp~RP  184 (277)
                      ++.|++++||+++..++++.+.|..+|... +.+++.   .+++++++++++++++|.+|||+|+  ++|+  .++|+||
T Consensus         3 ~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~   78 (293)
T PRK06080          3 FKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPL---LALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRA   78 (293)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCccc
Confidence            678999999999999999999999888432 345543   3677889999999999999999999  4785  4678999


Q ss_pred             ccCCccChHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHH
Q 037091          185 LACGDFSMGEGLAITIASPLMAVAMGIM----LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLL  260 (277)
Q Consensus       185 L~SG~IS~r~A~~l~~~ll~lgliLa~~----l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~l  260 (277)
                      +++|++|++++..++.++.+++++++..    .+.+.++++++ +++.+++||.  | |+++|+++ ++++.++...|.+
T Consensus        79 l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~-~~~~~~~Ys~--~-p~~~~~~g-lge~~~~~~~G~~  153 (293)
T PRK06080         79 IGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLGLL-CIAAAILYTG--G-PKPYGYTG-LGELFVGVFFGLV  153 (293)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHhhhhcC--C-CCccCCCC-cHHHHHHHHHHHH
Confidence            9999999999999998888877666544    35555566654 7778899997  7 88999988 7999999988877


Q ss_pred             HHHHHH
Q 037091          261 LLFPFF  266 (277)
Q Consensus       261 v~~g~~  266 (277)
                      +..|.+
T Consensus       154 ~~~~~~  159 (293)
T PRK06080        154 IVLGTY  159 (293)
T ss_pred             HHHHHH
Confidence            766543

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=99.81  E-value=5.4e-19  Score=164.75  Aligned_cols=148  Identities=15%  Similarity=0.081  Sum_probs=115.2

Q ss_pred             HHHHHHHhhhcchhHHHHHHH---HHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC--C
Q 037091          107 KKCDAFYRLTRPYSCVSIIAA---LLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--P  181 (277)
Q Consensus       107 ~~l~~~l~l~RP~~~~~~ll~---~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrink--p  181 (277)
                      +++++|++++|.++..++.+.   ...+.+++....+..++   ..+++..++++++++++|++||++|+|+|++|+  |
T Consensus         4 ~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~---~~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~   80 (289)
T PLN02809          4 PSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDL---KMLALFGCGALLLRGAGCTINDLLDRDIDKKVERTK   80 (289)
T ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcH---HHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCCCC
Confidence            568899999999887666553   33445554311011222   235677899999999999999999999999874  6


Q ss_pred             CCcccCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHH
Q 037091          182 HLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLL  261 (277)
Q Consensus       182 ~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv  261 (277)
                      +||+|+|++|+++|+.+..++.++++++++.+|+..+.++++ +++++++|+.       +||++.++.+..+..++.-+
T Consensus        81 ~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~Y~~-------~KR~t~~~~~~lg~~~~~~~  152 (289)
T PLN02809         81 LRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILGAS-SLLLVFTYPL-------MKRFTFWPQAFLGLTFNWGA  152 (289)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHhH-------HHhcCcchHHHHHHHHHHHH
Confidence            999999999999999999999999999999889888888876 6777889973       99999898887777666544


Q ss_pred             HHHH
Q 037091          262 LFPF  265 (277)
Q Consensus       262 ~~g~  265 (277)
                      ..|+
T Consensus       153 l~g~  156 (289)
T PLN02809        153 LLGW  156 (289)
T ss_pred             HHHH
Confidence            4443

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=99.80  E-value=1.1e-18  Score=162.29  Aligned_cols=148  Identities=15%  Similarity=0.086  Sum_probs=115.4

Q ss_pred             HHHHHhhhcchhHHHHHHHHHHHHHhcCC-CCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC--CCCcc
Q 037091          109 CDAFYRLTRPYSCVSIIAALLSVSLLPLQ-NPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PHLPL  185 (277)
Q Consensus       109 l~~~l~l~RP~~~~~~ll~~l~g~llA~~-~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrink--p~RPL  185 (277)
                      ++.+++++||++.+......+.+.+.+.. ..+.+++.   .+++..++++++++++|++||++|+|+|++|+  |+||+
T Consensus         2 ~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL   78 (284)
T PRK12888          2 VRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWA---DLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGREL   78 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCC
Confidence            57899999998877765555555555521 01233432   35678899999999999999999999999997  79999


Q ss_pred             cCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHHHH
Q 037091          186 ACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPF  265 (277)
Q Consensus       186 ~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~g~  265 (277)
                      |+|++|+++|+.+..++++++++++..+|+.++.++.+ +++....|+.       .||++.++.+.+++..+.-...| 
T Consensus        79 ~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~~~-~~~~~~~Y~~-------~Kr~t~~~~~~lg~~~~~~~l~g-  149 (284)
T PRK12888         79 VTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALAPL-AVAPLVVYPY-------AKRFTNFPHAILGLAQAVGPVGA-  149 (284)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHH-------hhcccchhhHHHHHHHHHHHHHH-
Confidence            99999999999999998888888888889888877775 5666778973       78888888888777777544444 


Q ss_pred             HHH
Q 037091          266 FIH  268 (277)
Q Consensus       266 ~~~  268 (277)
                      |.+
T Consensus       150 ~~a  152 (284)
T PRK12888        150 WIA  152 (284)
T ss_pred             HHH
Confidence            444

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.80  E-value=8.7e-19  Score=165.04  Aligned_cols=150  Identities=17%  Similarity=0.143  Sum_probs=118.4

Q ss_pred             HHHHHHHHHhhh---cchhHHHHHHHHHHHHHhcCCCCC---CCChHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q 037091          105 LNKKCDAFYRLT---RPYSCVSIIAALLSVSLLPLQNPA---DFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKV  178 (277)
Q Consensus       105 ~~~~l~~~l~l~---RP~~~~~~ll~~l~g~llA~~~~~---~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDri  178 (277)
                      .+.++++|++++   ||+.....+++.+.|.++|.....   ..++.   .+++++++++++++++|++|||+|+|+|+.
T Consensus        26 ~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~  102 (314)
T PRK12878         26 LPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRDIDAK  102 (314)
T ss_pred             cchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            456789999999   888889999999999999854211   33332   356788999999999999999999999987


Q ss_pred             CC--CCCcccCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHH
Q 037091          179 NK--PHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISM  256 (277)
Q Consensus       179 nk--p~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~  256 (277)
                      |+  ++||+|+|++|++++..+..++.++|+++.+..|++.+.++++ ++++++.|+.       .||+..++....+.+
T Consensus       103 ~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~~~-~~~~~~~Y~~-------~KR~t~~~~~~~Gl~  174 (314)
T PRK12878        103 VARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALGIA-SLAIVAAYPF-------MKRITWWPQFFLGLA  174 (314)
T ss_pred             CCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHH-------HHhcCCcchHHHHHH
Confidence            65  6899999999999999999999999999988888888888876 6777889983       677665554444444


Q ss_pred             HHHHHHHHH
Q 037091          257 NGLLLLFPF  265 (277)
Q Consensus       257 ~g~lv~~g~  265 (277)
                      .+.....|+
T Consensus       175 ~~~~~l~g~  183 (314)
T PRK12878        175 FSWGALMGW  183 (314)
T ss_pred             HHHHHHHHH
Confidence            443333443

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=99.80  E-value=1.6e-18  Score=162.45  Aligned_cols=154  Identities=13%  Similarity=0.070  Sum_probs=117.1

Q ss_pred             HHHHHHHhhhcchhHHHHHHHHHHHHHhcCC---CCCC-CChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC--
Q 037091          107 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQ---NPAD-FTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--  180 (277)
Q Consensus       107 ~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~---~~~~-~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrink--  180 (277)
                      ++++.|.+++|-++.+..+--..+|.++|..   ...+ +++..+..+++..++++++++++|++||++|+|+|++|+  
T Consensus         2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT   81 (300)
T PRK12876          2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLGGIKTISLGGSAFFCARTVGIIVNQIIDCAIDKKNPRT   81 (300)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCCC
Confidence            3578899999995444443334557777731   1122 111113356788999999999999999999999999997  


Q ss_pred             CCCcccCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHH
Q 037091          181 PHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLL  260 (277)
Q Consensus       181 p~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~l  260 (277)
                      ++||+|+|++|+++|+.+.+.+.+++++++..+|+.+..++.+ ++++..+|+.       +||++.++.+..+.+.+. 
T Consensus        82 ~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~~-~~~~~~iY~~-------~KR~t~~~~~vLGl~~~~-  152 (300)
T PRK12876         82 SSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAVL-STLLMIIYPY-------TKRVTFLCHWILGLVYYL-  152 (300)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHh-------HhcCCchhHHHHHHHHHH-
Confidence            6999999999999999999888888888888999999888886 6666788973       999999998877777775 


Q ss_pred             HHHHHHHHH
Q 037091          261 LLFPFFIHF  269 (277)
Q Consensus       261 v~~g~~~~~  269 (277)
                      -+++.|.++
T Consensus       153 ~~l~~~~Av  161 (300)
T PRK12876        153 AILMNFFAI  161 (300)
T ss_pred             HHHHHHHHH
Confidence            334444443

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=99.79  E-value=4.1e-18  Score=157.84  Aligned_cols=143  Identities=19%  Similarity=0.200  Sum_probs=112.5

Q ss_pred             HHhhhcchhHHHHHHHHHHHHHhcCCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC--CCCcccCC
Q 037091          112 FYRLTRPYSCVSIIAALLSVSLLPLQNPADF-TPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PHLPLACG  188 (277)
Q Consensus       112 ~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~-~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrink--p~RPL~SG  188 (277)
                      ++|+.||..+....++.+.|.++|... ++. ++   ..+++.+++++++++++|++|||+|+|+|+.|+  |+||+|+|
T Consensus         7 l~R~~kp~~~~l~~~~~~~g~~la~~~-~~~~~~---~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG   82 (281)
T TIGR01474         7 LMRADKPIGTLLLLWPCLWSLLLAAQA-GGIPPL---YLLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASG   82 (281)
T ss_pred             HHccccHHHHHHHHHHHHHHHHHHhcc-cCCCcH---HHHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCC
Confidence            444455555566667777788887431 122 22   124667788899999999999999999999764  68999999


Q ss_pred             ccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHHHHH
Q 037091          189 DFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFF  266 (277)
Q Consensus       189 ~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~g~~  266 (277)
                      ++|+++|..+..++.++|+++++.+|+....++++ ++++.+.|+.       .||++.++.+..+...|..+..|++
T Consensus        83 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~-~~~~~~~Y~~-------~Kr~~~~~~~~~g~~~~~~~~~g~~  152 (281)
T TIGR01474        83 AVSVRQAILFLLVQLLVALGVLLQLNPLTILLGVA-SLALVATYPF-------MKRITYWPQLVLGLAFGWGALMGWA  152 (281)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHhch-------hcccccccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999899988888886 6777999983       8998888888888777766666643

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=99.78  E-value=2.4e-18  Score=160.89  Aligned_cols=143  Identities=17%  Similarity=0.110  Sum_probs=108.9

Q ss_pred             HHHHHHHHhhhcchhHHHHHH---HHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC--
Q 037091          106 NKKCDAFYRLTRPYSCVSIIA---ALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--  180 (277)
Q Consensus       106 ~~~l~~~l~l~RP~~~~~~ll---~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrink--  180 (277)
                      ++++++|++++||+++.++.+   +.+.|.+++..  ...++   ...+++++++.++++++|++||+.|+|+|+.|+  
T Consensus         4 ~~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~--~~~~~---~~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT   78 (294)
T PRK12873          4 SIKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPS--APPSL---LLLLLIILGGLAVSGAGCIANDLWDRRIDRKVERT   78 (294)
T ss_pred             hHhHHHHHHHhCccccchHHHHHHHHHHHHHHccC--CCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcC
Confidence            346889999988887765554   55556666532  11222   235678899999999999999999999999875  


Q ss_pred             CCCcccCCccChHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHH
Q 037091          181 PHLPLACGDFSMGEGLAITIASPLMAVAMGIML----RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISM  256 (277)
Q Consensus       181 p~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l----~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~  256 (277)
                      ++||+|+|++|+++|+.+.+++.++++++++.+    |+.+..++.+ ++++...|+.       .||+..+..+..++.
T Consensus        79 ~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~~-~~~~~~~Y~~-------~KR~t~~~~~vlg~~  150 (294)
T PRK12873         79 KNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAFL-ALPPILIYPS-------AKRWFAYPQAILALC  150 (294)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH-HHHHHHHHHH-------HHhccccchHHHHHH
Confidence            699999999999999999999999999887655    6677777775 6667889982       788776666655555


Q ss_pred             HHHHH
Q 037091          257 NGLLL  261 (277)
Q Consensus       257 ~g~lv  261 (277)
                      .|.-.
T Consensus       151 ~a~~~  155 (294)
T PRK12873        151 WGFAV  155 (294)
T ss_pred             HHhHH
Confidence            55333

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.78  E-value=4.7e-18  Score=160.31  Aligned_cols=151  Identities=15%  Similarity=0.102  Sum_probs=124.5

Q ss_pred             HHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccC----CCCCc
Q 037091          109 CDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN----KPHLP  184 (277)
Q Consensus       109 l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrin----kp~RP  184 (277)
                      ++.|++++||++....+++++.|..+|....+.+++.   .+++++++++++++++|.+|||+|.+.|.-+    ++.|+
T Consensus         3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~---~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~   79 (317)
T PRK13387          3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWL---LFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNG   79 (317)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcch
Confidence            5789999999999999999999999885322456653   3677888999999999999999998865443    37899


Q ss_pred             ccCCccChHHHHHHHHHHHHHHHH----HHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHH
Q 037091          185 LACGDFSMGEGLAITIASPLMAVA----MGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLL  260 (277)
Q Consensus       185 L~SG~IS~r~A~~l~~~ll~lgli----La~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~l  260 (277)
                      +++|.+|++++...+..+++++++    +.+..+...+.++++ +++.++.||.  | |+++|++| +|++.++...|++
T Consensus        80 i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~igl~-g~~~~~~Yt~--g-P~~l~y~g-LGe~~v~i~~G~~  154 (317)
T PRK13387         80 IGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIGLI-CFAIGILYTG--G-PLPLSRMP-LGEIFSGLTMGFG  154 (317)
T ss_pred             hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHH-HHHHhhhhcC--C-CcccccCc-cHHHHHHHHHHHH
Confidence            999999999999999988888776    444556666667765 8888999997  7 99999999 9999999999977


Q ss_pred             HHHHHHH
Q 037091          261 LLFPFFI  267 (277)
Q Consensus       261 v~~g~~~  267 (277)
                      +.+|.++
T Consensus       155 ~v~g~~y  161 (317)
T PRK13387        155 IFLLAVY  161 (317)
T ss_pred             HHHHHHH
Confidence            7766543

>PLN02776 prenyltransferase

Probab=99.75  E-value=3.6e-17  Score=155.60  Aligned_cols=142  Identities=15%  Similarity=0.042  Sum_probs=113.5

Q ss_pred             hhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC--CCCcccCCccCh
Q 037091          115 LTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PHLPLACGDFSM  192 (277)
Q Consensus       115 l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrink--p~RPL~SG~IS~  192 (277)
                      ++||+....++++.+.|+++|.+.  ..++   ..++++.+++.++.+++|++||++|+|+|+.|+  ++||+|+|++|+
T Consensus         1 L~Kpri~~lv~~ta~~G~~lA~~~--~~~~---~~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~   75 (341)
T PLN02776          1 LSKARLSALVVATSGAGFVLGSGE--AIDL---PGLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV   75 (341)
T ss_pred             CCcchhHHHHHHHHHHHHHHhcCC--CCCH---HHHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence            478999999999999999998532  2233   235677899999999999999999999999976  699999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 037091          193 GEGLAITIASPLMAVAM-GIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHF  269 (277)
Q Consensus       193 r~A~~l~~~ll~lgliL-a~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~g~~~~~  269 (277)
                      ++|..+++++.++|+.+ ++++|+.+.++++++.+++...||.       +||++.+. ..++.+.|-+-+++-|.++
T Consensus        76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~-------lKR~t~~~-~~lG~~~Ga~ppL~Gw~Av  145 (341)
T PLN02776         76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTP-------LKQIHPAN-TWVGAVVGAIPPLMGWAAA  145 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-------HccCCchh-HHHHHHHHHHHHHHHHHHH
Confidence            99999999999999854 5678988888877645555778982       99999664 5777777754555555544

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=2e-17  Score=154.32  Aligned_cols=132  Identities=17%  Similarity=0.205  Sum_probs=115.6

Q ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC--CC
Q 037091          105 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PH  182 (277)
Q Consensus       105 ~~~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrink--p~  182 (277)
                      ..+++++|++++||+.+...+++.+.|+++|..  +..++.   .++.+.++..++.++++++|+++|+|+|++|+  ++
T Consensus        14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~--~~~~~~---l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~   88 (304)
T COG0109          14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPR--GSINPL---LLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRK   88 (304)
T ss_pred             hHHHHHHHHHHhCCeeeehHHHHHHHHHHHccc--ccccHH---HHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccC
Confidence            346789999999999999999999999999964  234443   36788999999999999999999999999986  58


Q ss_pred             CcccCCccChHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhh
Q 037091          183 LPLACGDFSMGEGLAITIASPLMAVAMG-IMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPL  247 (277)
Q Consensus       183 RPL~SG~IS~r~A~~l~~~ll~lgliLa-~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~l  247 (277)
                      ||+++|+++|++++.++.++.++|+.+. +..|+.+.++++.+.++++.+||.      .+||+..
T Consensus        89 RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~------~lKR~T~  148 (304)
T COG0109          89 RPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTL------WLKRRTP  148 (304)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh------hccCCcc
Confidence            9999999999999999999999999887 788999988888888999999995      4777663

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.70  E-value=1.1e-16  Score=143.08  Aligned_cols=134  Identities=23%  Similarity=0.339  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc--CCCCCcccCCccChHHHHHHHHH
Q 037091          124 IIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKV--NKPHLPLACGDFSMGEGLAITIA  201 (277)
Q Consensus       124 ~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDri--nkp~RPL~SG~IS~r~A~~l~~~  201 (277)
                      .+.+++.+..++..  ...++.   .+..+.+++++++.+++.+||+.|+|+|+.  |||+||+++|++|.+++..++.+
T Consensus         4 ~~~~~l~~~~~~~~--~~~~~~---~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~   78 (257)
T PF01040_consen    4 SFLPVLAGLALASG--GPFNWP---IFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALI   78 (257)
T ss_pred             HHHHHHHHHHHHHc--CCCCHH---HHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHH
Confidence            34455555443322  233432   355667777799999999999999999999  89999999999999999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHHHHHH
Q 037091          202 SPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFI  267 (277)
Q Consensus       202 ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~g~~~  267 (277)
                      +.++++++++..++..+.+.++ +.+.+++||   | |.|+|++++++++.++.+++.....|.+.
T Consensus        79 ~~~l~l~l~~~~~~~~~~~~~~-~~~~~~~Ys---~-~~~lk~~~~~~~~~~~~~~~~~~~~~~~~  139 (257)
T PF01040_consen   79 LLLLGLLLALLLGPWFLLILLL-GFLLGLLYS---P-PLRLKRRPLWGELVVALVFGLLILLGAYA  139 (257)
T ss_pred             HHHHHHHHHHhcCchhHHHHHH-HHHHHHHHh---h-hhhhcceeccchhhHHHhhhHhhhhhhhh
Confidence            9999999998888888888776 677779999   5 89999999999999999999888877776

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.68  E-value=1.1e-15  Score=142.39  Aligned_cols=142  Identities=15%  Similarity=0.143  Sum_probs=116.3

Q ss_pred             cchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccccc--ccccC--CCCCcccCCccCh
Q 037091          117 RPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVH--IDKVN--KPHLPLACGDFSM  192 (277)
Q Consensus       117 RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~e--iDrin--kp~RPL~SG~IS~  192 (277)
                      ||+++...+.+++.|..+|... +.+++.   .+++++++++++++++|.+|||+|.+  .|+.+  +|.|++++|.+|+
T Consensus         1 Rp~tl~~s~~pv~lG~ala~~~-~~f~~~---~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~   76 (284)
T TIGR00751         1 RPKTLPLAIAPIVAGTALAAWL-HAFVWL---VALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP   76 (284)
T ss_pred             CCchHHHHHHHHHHHHHHHHHc-CCccHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence            8999999999999999998543 356654   36788899999999999999999985  46543  5899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH----hhH------HHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHH
Q 037091          193 GEGLAITIASPLMAVAMGIM----LRS------PPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLL  262 (277)
Q Consensus       193 r~A~~l~~~ll~lgliLa~~----l~~------~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~  262 (277)
                      +++..++.++++++++++.+    .++      +.+.++++ +++.+++||.  | |+++|+++ +|++.++...|++..
T Consensus        77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~-~~~~~~~Yt~--g-P~~l~y~g-LGE~~v~i~~G~l~v  151 (284)
T TIGR00751        77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGAL-CIAAAITYTV--G-SKPYGYAG-LGDISVLVFFGPLAV  151 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHH-HHHHhHhhcC--C-CCccccCc-hHHHHHHHHHHHHHH
Confidence            99999998888877655543    332      23455554 7888999997  7 99999999 999999999998888


Q ss_pred             HHHHH
Q 037091          263 FPFFI  267 (277)
Q Consensus       263 ~g~~~  267 (277)
                      +|.|+
T Consensus       152 ~g~~y  156 (284)
T TIGR00751       152 LGTQY  156 (284)
T ss_pred             HHHHH
Confidence            88765

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.67  E-value=1.8e-15  Score=141.68  Aligned_cols=123  Identities=18%  Similarity=0.177  Sum_probs=88.8

Q ss_pred             HHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccC-------
Q 037091          107 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN-------  179 (277)
Q Consensus       107 ~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrin-------  179 (277)
                      ++++.|++++||++++....+++.|.++|....+.+++.   .+++.++++.++..++|++|||+|+|.|+.|       
T Consensus         3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~---~~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r   79 (297)
T PRK12871          3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWE---LTIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTR   79 (297)
T ss_pred             chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHH---HHHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhc
Confidence            357899999999988887777777877773111234442   1233344444445667899999999999875       


Q ss_pred             --C--CCCcccCCccChHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHhhhcC
Q 037091          180 --K--PHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRS----PPLVIGFIIWCIVGGAYS  233 (277)
Q Consensus       180 --k--p~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~----~~lll~ll~~~ll~~~YS  233 (277)
                        |  ++||+++|++|++++..+.+++.++|++++..++.    ..+.+++ .+.++++.|+
T Consensus        80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~-~~~~~~~~Y~  140 (297)
T PRK12871         80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIML-YSYGIEAFYQ  140 (297)
T ss_pred             cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence              3  48999999999999999999999999888776544    2333333 3566777787

>PLN02922 prenyltransferase

Probab=99.67  E-value=2.2e-15  Score=142.22  Aligned_cols=150  Identities=15%  Similarity=0.133  Sum_probs=118.4

Q ss_pred             HHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccccc--ccccCC--CC
Q 037091          107 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVH--IDKVNK--PH  182 (277)
Q Consensus       107 ~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~e--iDrink--p~  182 (277)
                      ++++.|++.+||++...++++++.|.++|....+.+++.   .++++++++++++++.|.+|||+|.+  .|+.++  |.
T Consensus        13 ~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~---~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~   89 (315)
T PLN02922         13 SRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDAR---RYGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVV   89 (315)
T ss_pred             cHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCC
Confidence            457889999999999999999999999885433467764   36788999999999999999999987  687543  23


Q ss_pred             CcccCCccChHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHH
Q 037091          183 LPLACGDFSMGEGLAITIASPLMAVAMGIM-----LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMN  257 (277)
Q Consensus       183 RPL~SG~IS~r~A~~l~~~ll~lgliLa~~-----l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~  257 (277)
                      |+  .|  |+++....+.++++++++..+.     .+.+.++++++ +++.+++||.  | |+++|+++ +|++.++...
T Consensus        90 ~~--~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~-g~~~~~~Yt~--g-P~pl~y~g-LGE~~v~i~f  160 (315)
T PLN02922         90 NL--VG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAA-AILCGYVYQC--P-PFRLSYKG-LGEPLCFAAF  160 (315)
T ss_pred             Cc--cc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHH-HHHHHHHHhc--C-CcccccCc-chHHHHHHHH
Confidence            44  33  9999988888887777633222     13445555554 8889999997  7 99999999 8999999999


Q ss_pred             HHHHHHHHHHH
Q 037091          258 GLLLLFPFFIH  268 (277)
Q Consensus       258 g~lv~~g~~~~  268 (277)
                      |+++..|.|+.
T Consensus       161 G~l~v~g~y~~  171 (315)
T PLN02922        161 GPLATTAFYLA  171 (315)
T ss_pred             HHHHHHHHHHH
Confidence            98888886654

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.66  E-value=2.5e-15  Score=141.25  Aligned_cols=153  Identities=16%  Similarity=0.128  Sum_probs=122.2

Q ss_pred             HHHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccccc--ccccCCCCC
Q 037091          106 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVH--IDKVNKPHL  183 (277)
Q Consensus       106 ~~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~e--iDrinkp~R  183 (277)
                      +++++.|++.+||+++..++++++.|.++|....+++++.   .++++++++++++++.+.+|||+|.+  .|+. ++. 
T Consensus         9 ~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~---~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~~-   83 (304)
T PRK07419          9 PSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLD---QFITFLLAAILILAWENLSNDVFDADTGIDKN-KFH-   83 (304)
T ss_pred             ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-ccc-
Confidence            4567889999999999999999999999985432457764   36788999999999999999999988  7874 222 


Q ss_pred             cccCCccChHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHH
Q 037091          184 PLACGDFSMGEGLAITIASPLMAVAMGI----MLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGL  259 (277)
Q Consensus       184 PL~SG~IS~r~A~~l~~~ll~lgliLa~----~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~  259 (277)
                      ...++..++++...++.++++++++++.    ..+++.+.++++ +++.+++||.  | |+++|+++ +|++.++...|+
T Consensus        84 ~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig~~-g~~~~~~YT~--g-P~~l~y~g-LGE~~v~l~~G~  158 (304)
T PRK07419         84 SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLVLL-CCFLGYLYQG--P-PFRLGYQG-LGEPLCFLAFGP  158 (304)
T ss_pred             CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH-HHHHhheccC--C-CcccCCCC-chHHHHHHHHHH
Confidence            3445666899999888888877765543    345555556665 7889999997  7 99999999 799999999999


Q ss_pred             HHHHHHHHH
Q 037091          260 LLLFPFFIH  268 (277)
Q Consensus       260 lv~~g~~~~  268 (277)
                      ++..|.|+-
T Consensus       159 l~v~g~~yv  167 (304)
T PRK07419        159 LAVAAALYS  167 (304)
T ss_pred             HHHHHHHHH
Confidence            988887764

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.66  E-value=5.2e-16  Score=144.97  Aligned_cols=102  Identities=12%  Similarity=0.138  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCcccCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 037091          148 IEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCI  227 (277)
Q Consensus       148 ~~~ll~lla~ll~~~a~~viND~~D~eiDrinkp~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~l  227 (277)
                      .+.+++.+.+++..++++++||++|+|+|++|+|+||+|||++|+++|..++.++.++++.++...     ...+. .++
T Consensus        46 ~~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-----~i~i~-~~~  119 (299)
T PRK13592         46 IQEFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-----MNNVG-WFL  119 (299)
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-HHH
Confidence            356777788888899999999999999999999999999999999999999999977777776544     11121 233


Q ss_pred             Hhhhc-----CCCccCcccccchhhHHHHHHHHHHHHHH
Q 037091          228 VGGAY-----SIDLPPLLRWKGNPLMAAVTIISMNGLLL  261 (277)
Q Consensus       228 l~~~Y-----S~~lp~P~rlKr~~ll~~l~i~~~~g~lv  261 (277)
                      ..+.|     +      .++|+.++.+++.++...|..+
T Consensus       120 i~~lY~~lm~a------~~~K~~~l~gNl~Va~ltg~~f  152 (299)
T PRK13592        120 FLYIYGTLMSF------WFFKRDKIQNSLPLALVTHNPV  152 (299)
T ss_pred             HHHHHHHHHHH------HHHcccCCCcchhhhhhccchh
Confidence            34445     5      3699999999999998888444

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.60  E-value=2.7e-14  Score=132.91  Aligned_cols=135  Identities=17%  Similarity=0.282  Sum_probs=86.5

Q ss_pred             HHHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCC-CChHHHHHHHHHHHHH--HHHHHHHHHhhccccccccccCCCC
Q 037091          106 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPAD-FTPKLIIEAFKCMVPA--IMMNNYANAINQLADVHIDKVNKPH  182 (277)
Q Consensus       106 ~~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~-~~~~~l~~~ll~lla~--ll~~~a~~viND~~D~eiDrinkp~  182 (277)
                      .++++.++++.||+++..++.+++.|..+|.....+ +++.     ++++++.  +..|...|++||++|+|+|+.|+++
T Consensus         5 ~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~-----~~~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~prk   79 (282)
T PRK12875          5 GDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPA-----AVALFAYFLFPANVFLYGVNDVFDADTDELNPKK   79 (282)
T ss_pred             HHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHH-----HHHHHHHHHHHHHHHHhcchhhhhhhccccCCCc
Confidence            457888999999999999999999999998643211 3332     2222222  3455677889999999999999765


Q ss_pred             Cc---ccCCccChHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHH
Q 037091          183 LP---LACGDFSMGEGLAI-TIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVT  252 (277)
Q Consensus       183 RP---L~SG~IS~r~A~~l-~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~  252 (277)
                      +.   ++   .+.+.+... .....++++.+.+..++....+. +++++++++||.  | |+|+|++|+.+..+
T Consensus        80 ~~~r~~~---~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~~~l-l~~i~~~~~YS~--p-P~rlk~~p~~~~~~  146 (282)
T PRK12875         80 DREREVR---YRGDRRVLVAVALSGALALAFLLVLPPAAWPAL-LAFLVLSVEYSA--P-PLRFKTTPVLDSLS  146 (282)
T ss_pred             cCCCCcc---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHcC--C-CccchhccHHHHHH
Confidence            43   33   111222211 11122334444434444333333 357888999997  7 99999999876543

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.58  E-value=5.6e-14  Score=130.89  Aligned_cols=143  Identities=18%  Similarity=0.073  Sum_probs=97.5

Q ss_pred             HHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHH-HHHHHHHHHHhhccccccccccCCCCCcccCC
Q 037091          110 DAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVP-AIMMNNYANAINQLADVHIDKVNKPHLPLACG  188 (277)
Q Consensus       110 ~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla-~ll~~~a~~viND~~D~eiDrinkp~RPL~SG  188 (277)
                      |.++++.||++|+.+.+++..|+++|.+   ..++    .++++.++ ....+.+.+++|||+|+|.|+.|++.+.. .|
T Consensus         2 ~~~~~~~rP~~wi~~a~pf~~g~~la~~---~~~~----~~l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~g   73 (282)
T PRK13105          2 RQLLLSSRPISWINTAYPFAAAYLLAGG---EIDW----LFVVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-EG   73 (282)
T ss_pred             hhHHHhcccHHHhccHHHHHHHHHHHCC---CCCh----HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-CC
Confidence            5789999999999999999999998832   2223    23344444 33444444688999999999999765443 48


Q ss_pred             ccChHHHHHHHHHHHHH-----HHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHH
Q 037091          189 DFSMGEGLAITIASPLM-----AVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLF  263 (277)
Q Consensus       189 ~IS~r~A~~l~~~ll~l-----gliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~  263 (277)
                      .+|+++....+..+.++     ++.+....+++.+.++.+ +++.++.||.  | |.|+|++|+.+.++.++.......+
T Consensus        74 ~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~~-ai~~~~~YS~--~-p~rlk~~gl~d~~t~~~~f~~~~v~  149 (282)
T PRK13105         74 AVLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVLAV-SVFAVVAYSA--P-GLRFKERPFLDSLTSSTHFVSPALY  149 (282)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHhcC--C-CccccccchHHHHHHHHHHHHHHHH
Confidence            89999984443333333     333333336666666664 8889999997  7 8899999998886555544332333


Q ss_pred             H
Q 037091          264 P  264 (277)
Q Consensus       264 g  264 (277)
                      |
T Consensus       150 G  150 (282)
T PRK13105        150 G  150 (282)
T ss_pred             H
Confidence            3

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.57  E-value=4.2e-14  Score=131.78  Aligned_cols=147  Identities=14%  Similarity=0.083  Sum_probs=112.5

Q ss_pred             HHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccccc--ccccCCCCCcccCCc
Q 037091          112 FYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVH--IDKVNKPHLPLACGD  189 (277)
Q Consensus       112 ~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~e--iDrinkp~RPL~SG~  189 (277)
                      |++.+||++...++++++.|..+|....+.+++.   .+++++++++++++++|.+|||+|.+  .|+.+.  ....++.
T Consensus         2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~---~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~--~~~~~~~   76 (285)
T TIGR02235         2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLD---RFALFLIAAILILAWINLTNDVFDSDTGIDRFKL--HSIVNLT   76 (285)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc--CCccccc
Confidence            5788999999999999999999985433457764   36778899999999999999999987  487532  1222334


Q ss_pred             cChHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHHHH
Q 037091          190 FSMGEGLAITIASPLMAVAMG----IMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPF  265 (277)
Q Consensus       190 IS~r~A~~l~~~ll~lgliLa----~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~g~  265 (277)
                      .|+++......++.+++++++    +..+.+.+.++++ +++.++.||.  | |+++|+++ +|++.++...|.++..|.
T Consensus        77 ~~~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg~~-g~~~~~~Yt~--g-P~~l~y~g-LGE~~v~l~~G~l~v~g~  151 (285)
T TIGR02235        77 GSRSLVFWLANFFLLIGLVGIAALSWRWQITVLALVGL-CCFLGYLYQG--P-PFRLGYQG-LGEPICWLCFGPLAIAAA  151 (285)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHhhcC--C-CcccCCCC-ccHHHHHHHHHHHHHHHH
Confidence            567888877777777665544    3344444555554 8889999997  7 99999999 799999999998888776


Q ss_pred             HHH
Q 037091          266 FIH  268 (277)
Q Consensus       266 ~~~  268 (277)
                      |+-
T Consensus       152 ~yv  154 (285)
T TIGR02235       152 LYA  154 (285)
T ss_pred             HHH
Confidence            553

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.57  E-value=6e-14  Score=131.22  Aligned_cols=155  Identities=16%  Similarity=0.176  Sum_probs=120.2

Q ss_pred             HHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccccc--ccc----cCCC
Q 037091          108 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVH--IDK----VNKP  181 (277)
Q Consensus       108 ~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~e--iDr----inkp  181 (277)
                      +.+.|++.+|||++...++++++|..+|......+++   ..++++++++.+++++.+..|||+|.+  .|.    ..+.
T Consensus         7 ~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~---~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~   83 (303)
T COG1575           7 KTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNL---LVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQ   83 (303)
T ss_pred             HHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHH---HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccc
Confidence            3578999999999999999999999998543123444   457899999999999999999999987  574    3345


Q ss_pred             CCcccCCccChHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHH
Q 037091          182 HLPLACGDFSMGEGLAITIASPLMAVAMGI----MLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMN  257 (277)
Q Consensus       182 ~RPL~SG~IS~r~A~~l~~~ll~lgliLa~----~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~  257 (277)
                      ++-+...+++++..+.+.+.+...+++++.    ..+.+.+.++++ +++.++.|++  + |+++.+.| +|++.++...
T Consensus        84 ~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG~l-~~~~g~~YTg--G-p~PlgY~g-LGEi~~~vff  158 (303)
T COG1575          84 SGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLGLL-CIAAGILYTG--G-PFPLGYMG-LGEIFVGVFF  158 (303)
T ss_pred             cceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHheeeecc--C-CcCcccCC-HHHHHHHHHH
Confidence            677777788888888777777666554443    344555666665 8999999997  7 99999999 9999999999


Q ss_pred             HHHHHHHH-HHHHH
Q 037091          258 GLLLLFPF-FIHFQ  270 (277)
Q Consensus       258 g~lv~~g~-~~~~~  270 (277)
                      |++..+|. |.+-|
T Consensus       159 G~l~v~g~~yiqt~  172 (303)
T COG1575         159 GPLIVLGAYYIQTG  172 (303)
T ss_pred             HHHHHHHHHHHhcc
Confidence            97777554 44433

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.57  E-value=3.3e-14  Score=130.96  Aligned_cols=150  Identities=19%  Similarity=0.117  Sum_probs=103.4

Q ss_pred             HHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCcccC
Q 037091          108 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPLAC  187 (277)
Q Consensus       108 ~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrinkp~RPL~S  187 (277)
                      -++++++++|..+.+..+.++..+.....    ..++.   .....++++++.+.++|++||++|+|+|++|+|+||.++
T Consensus         3 ~~~~~~~~~~~~~~~~a~~~~~l~~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~s   75 (285)
T PRK12872          3 LLFAFLKLFRYGNLLIAALGQSLVYMASL----LLGLP---ISWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVFS   75 (285)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHHHH----HHcCh---hHHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHHH
Confidence            36789999999888776665544322110    01111   134667788999999999999999999999999999985


Q ss_pred             CccChHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHhhhcCCCccCcc-cccchhhHHHHHHHHHHHHHHHHHH
Q 037091          188 GDFSMGEGLAITIASPLMAVAMG-IMLRSPPLVIGFIIWCIVGGAYSIDLPPLL-RWKGNPLMAAVTIISMNGLLLLFPF  265 (277)
Q Consensus       188 G~IS~r~A~~l~~~ll~lgliLa-~~l~~~~lll~ll~~~ll~~~YS~~lp~P~-rlKr~~ll~~l~i~~~~g~lv~~g~  265 (277)
                      ++.....+..+..+...+++.+. ...+++.++++++ +.++++.||.  | |. ++|+.|.++++.++.++|....++.
T Consensus        76 ~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~Ys~--~-~~~~lk~~p~~~~~~vg~~~g~~~~~~~  151 (285)
T PRK12872         76 ETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFII-PLILGILYSV--F-FKRRLKRIPLFKNLVVSLLWALSPLILG  151 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH-HHHHHHHHhC--h-hHHHHhhhhhHhhHHHHHHHHHHHHHHH
Confidence            44433333333333333343332 2346777777765 6777999996  4 44 6999999999999999997777655


Q ss_pred             HHH
Q 037091          266 FIH  268 (277)
Q Consensus       266 ~~~  268 (277)
                      +++
T Consensus       152 ~~~  154 (285)
T PRK12872        152 VYY  154 (285)
T ss_pred             HHh
Confidence            444

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=99.51  E-value=3.7e-15  Score=137.03  Aligned_cols=152  Identities=18%  Similarity=0.135  Sum_probs=115.1

Q ss_pred             hHhHHHHHHHHHHHhhhcchhHHHHHHHHHH---HHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 037091          100 SFMQVLNKKCDAFYRLTRPYSCVSIIAALLS---VSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHID  176 (277)
Q Consensus       100 ~~~~~~~~~l~~~l~l~RP~~~~~~ll~~l~---g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiD  176 (277)
                      ++....+.+++.|.+++|.+..+++.+....   ..++|.. .+.+ +. +..+-+.-++.+++++++|.+||+.|+|+|
T Consensus        55 s~~~~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAd-ag~~-p~-~~mL~LFG~GAllMRgAGCtINDlwDkdlD  131 (353)
T KOG1381|consen   55 SLVASSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAAD-AGLL-PS-IKMLALFGVGALLMRGAGCTINDLWDKDLD  131 (353)
T ss_pred             hhhhcCCccchhHHHHHhcCCCceeeeeecchHHHHHhccC-CCcc-ch-hHHHHHhcccHHHhccCCceehhhhhhhhh
Confidence            3344455679999999999998888774332   2333432 1222 22 222233347789999999999999999999


Q ss_pred             ccC--CCCCcccCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhH--HHHH
Q 037091          177 KVN--KPHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLM--AAVT  252 (277)
Q Consensus       177 rin--kp~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll--~~l~  252 (277)
                      +..  .+.|||+||++|+++|+.+..+.+.+|+.+...+|.....++.. ++.+...|+.       .||++++  ..|.
T Consensus       132 ~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg~~-sl~~v~~ypl-------~kr~TY~pq~vLg  203 (353)
T KOG1381|consen  132 AKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALGAS-SLALVITYPL-------MKRFTYWPQLVLG  203 (353)
T ss_pred             hhHhhhcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhccc-ccccEEEeeh-------hhhcchhHHHHHh
Confidence            864  57899999999999999999999999999999999998888875 8888899985       6676655  4556


Q ss_pred             HHHHHHHHHH
Q 037091          253 IISMNGLLLL  262 (277)
Q Consensus       253 i~~~~g~lv~  262 (277)
                      ..+.||.++.
T Consensus       204 ltfnwGAllG  213 (353)
T KOG1381|consen  204 LTFNWGALLG  213 (353)
T ss_pred             hhcchhhhhc
Confidence            6778887664

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.44  E-value=3.2e-12  Score=120.25  Aligned_cols=101  Identities=18%  Similarity=0.159  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHhhccccccccccCCCCCcccCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCC
Q 037091          155 VPAIMMNNYANAINQLADVHIDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSI  234 (277)
Q Consensus       155 la~ll~~~a~~viND~~D~eiDrinkp~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~  234 (277)
                      +++.+...++|++||++|+|+|++|+|+||.+    +.+.+..+.++..++|+++++..+.+  .++++ +.+.++.||.
T Consensus        65 ~~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~~--ll~ll-~~l~g~lYS~  137 (307)
T PRK13591         65 IAGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGML--LLAFL-PFITGYLYSK  137 (307)
T ss_pred             HHHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHH-HHHHHHHhcC
Confidence            34455678899999999999999999999986    88999999999999999999888754  34443 7778999995


Q ss_pred             C---ccCcccccchhhHHHHHHHHHHHHHHH
Q 037091          235 D---LPPLLRWKGNPLMAAVTIISMNGLLLL  262 (277)
Q Consensus       235 ~---lp~P~rlKr~~ll~~l~i~~~~g~lv~  262 (277)
                      -   .|.|.|+|+++.++++.++..+|..+.
T Consensus       138 Glk~~P~plklK~~~glGnl~V~i~~G~~i~  168 (307)
T PRK13591        138 GIKIGKFALKLKGGLGVKNIVVGITWGGFIA  168 (307)
T ss_pred             CCCCCCccccccCCCchhHHHHHHHHHHHHH
Confidence            1   133568999999999999999997554

>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]

Probab=99.17  E-value=8.4e-12  Score=117.37  Aligned_cols=137  Identities=18%  Similarity=0.201  Sum_probs=111.5

Q ss_pred             HHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC--CCCcc
Q 037091          108 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PHLPL  185 (277)
Q Consensus       108 ~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrink--p~RPL  185 (277)
                      ..+.|+++.||+.....++....|+++|.++   +++.   .++.+-+++.++.++++.+||+++.+.|..|+  +.||+
T Consensus        93 ~~~~y~eLsK~rLT~LVV~tt~~gYalap~p---~s~~---~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rpl  166 (409)
T KOG1380|consen   93 YARCYLELSKPRLTMLVVLTTMTGYALAPGP---FSFP---TLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRPL  166 (409)
T ss_pred             hHHHHHHhcccceEEEEeeeccccccccccC---CCcc---hhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhccccc
Confidence            4678999999987776667777788888643   4443   46788899999999999999999999999986  58999


Q ss_pred             cCCccChHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHH
Q 037091          186 ACGDFSMGEGLAITIASPLMAVAMGIM-LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNG  258 (277)
Q Consensus       186 ~SG~IS~r~A~~l~~~ll~lgliLa~~-l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g  258 (277)
                      ++|+|||-.|..++.+....|+.+.++ .|+....++..=.++++++|+   |    +||.. ..+-.++.+.|
T Consensus       167 v~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYT---P----lKrih-iinTWvGavVG  232 (409)
T KOG1380|consen  167 VRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYT---P----LKRIH-IINTWVGAVVG  232 (409)
T ss_pred             ccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeecccc---c----hhhhh-hhhhHHHHHhc
Confidence            999999999999999999999876554 899888888764567788999   5    89987 44555555555

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=97.55  E-value=2e-05  Score=72.07  Aligned_cols=148  Identities=14%  Similarity=0.129  Sum_probs=106.3

Q ss_pred             HHHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccccc--ccccCCCCC
Q 037091          106 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVH--IDKVNKPHL  183 (277)
Q Consensus       106 ~~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~e--iDrinkp~R  183 (277)
                      .++.+.|+...||+.....+.+...|..+|...-+..++. +..++++.++++..+.+++.+|.|+|.-  +|+...-+|
T Consensus        58 ~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~-l~~~fl~a~avlavh~agnlvntyfdf~kgid~kkaddr  136 (359)
T KOG4581|consen   58 FMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFR-LATFFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKADDR  136 (359)
T ss_pred             HHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchh-HHHHHHHHhhheeeecccchhhhhhhhhhccccccccch
Confidence            4578899999999999888889999999985321111222 3346677888889999999999999964  888777799


Q ss_pred             cccCCccChHHHHHHHHHHHHHHHHHH---HHhhHH---HHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHH
Q 037091          184 PLACGDFSMGEGLAITIASPLMAVAMG---IMLRSP---PLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMN  257 (277)
Q Consensus       184 PL~SG~IS~r~A~~l~~~ll~lgliLa---~~l~~~---~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~  257 (277)
                      .++...+.+.+...++..+..+|...+   ..++|.   -+.+..++++--.+.|+.    -+-+|... ++-+.|....
T Consensus       137 tlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytg----gigfkyia-lgdliili~f  211 (359)
T KOG4581|consen  137 TLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTG----GIGFKYIA-LGDLIILILF  211 (359)
T ss_pred             hHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEec----ccceEEEe-ccCEEEEEee
Confidence            999999999999988888888775443   234443   222222334445678986    46688877 6666666666


Q ss_pred             HH
Q 037091          258 GL  259 (277)
Q Consensus       258 g~  259 (277)
                      |+
T Consensus       212 gp  213 (359)
T KOG4581|consen  212 GP  213 (359)
T ss_pred             ch
Confidence            63

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=94.61  E-value=0.44  Score=45.19  Aligned_cols=45  Identities=11%  Similarity=-0.053  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHhhccccccccccC-CCCCcccCCccChHHHHHHHHHHHH
Q 037091          157 AIMMNNYANAINQLADVHIDKVN-KPHLPLACGDFSMGEGLAITIASPL  204 (277)
Q Consensus       157 ~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~IS~r~A~~l~~~ll~  204 (277)
                      ..+........||+.|+|.|+.+ |++-|.-=|+   +.+..+...+.+
T Consensus       183 ~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~---~~a~~ly~~l~~  228 (304)
T PRK07419        183 LGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGT---KRGAQLLPWIVG  228 (304)
T ss_pred             HHHHHHHHHHHcCCcchhhHHHcCCcceeeeech---HhHHHHHHHHHH
Confidence            34566778889999999999986 5677765554   444444443333

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=94.11  E-value=0.27  Score=46.70  Aligned_cols=50  Identities=20%  Similarity=0.163  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHhhccccccccccC-CCCCcccCCccChHHHHHHHHHHHHH
Q 037091          153 CMVPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDFSMGEGLAITIASPLM  205 (277)
Q Consensus       153 ~lla~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~IS~r~A~~l~~~ll~l  205 (277)
                      ..+...+..+.....||+.|+|.|+.+ |++-|..=|+   +.+..+..++.++
T Consensus       194 ~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~---~~a~~l~~~l~~~  244 (317)
T PRK13387        194 ISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGR---EKGVVLFAILFYA  244 (317)
T ss_pred             HHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcH---HhHHHHHHHHHHH
Confidence            445566677788999999999999986 5677765554   4444444444443

>PRK13591 ubiA prenyltransferase; Provisional

Probab=93.93  E-value=0.23  Score=47.28  Aligned_cols=69  Identities=19%  Similarity=0.234  Sum_probs=39.8

Q ss_pred             HhhccccccccccC-CCCCcccCCccChHHHHHHHHHHHHHH----HHHHHH-hhHHHHHHHHHHHHHHhhhcCC
Q 037091          166 AINQLADVHIDKVN-KPHLPLACGDFSMGEGLAITIASPLMA----VAMGIM-LRSPPLVIGFIIWCIVGGAYSI  234 (277)
Q Consensus       166 viND~~D~eiDrin-kp~RPL~SG~IS~r~A~~l~~~ll~lg----liLa~~-l~~~~lll~ll~~~ll~~~YS~  234 (277)
                      ++||+.|+|.|+.+ ++.-|+.=|+=..+.......++..+.    +.+++. ..|...+.+++..++....|+.
T Consensus       197 iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~  271 (307)
T PRK13591        197 CVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS  271 (307)
T ss_pred             HHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence            78999999999987 568888766543332222222222222    222222 1233344455557777888986

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=93.69  E-value=0.87  Score=42.69  Aligned_cols=49  Identities=10%  Similarity=-0.031  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHhhccccccccccC-CCCCcccCCccChHHHHHHHHHHHHHH
Q 037091          155 VPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDFSMGEGLAITIASPLMA  206 (277)
Q Consensus       155 la~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~IS~r~A~~l~~~ll~lg  206 (277)
                      +...+...+....||+-|+|.|+.+ |++-|.-=|   .+.+..+...+..++
T Consensus       168 l~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG---~~~a~~l~~~l~~~~  217 (285)
T TIGR02235       168 ILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLG---TKLAAKIVPWVISLS  217 (285)
T ss_pred             HHHHHHHHHHHHhcCCccchhHHHcCCcceeheec---HHhHHHHHHHHHHHH
Confidence            3444667788899999999999986 567776444   455555544444443

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=93.60  E-value=0.72  Score=43.93  Aligned_cols=40  Identities=20%  Similarity=0.154  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHhhccccccccccCCC-CCcccCCcc
Q 037091          151 FKCMVPAIMMNNYANAINQLADVHIDKVNKP-HLPLACGDF  190 (277)
Q Consensus       151 ll~lla~ll~~~a~~viND~~D~eiDrinkp-~RPL~SG~I  190 (277)
                      ++..+.+....+..+..|++.|+|.|+.|+| .-|.-=|+-
T Consensus       179 ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~  219 (303)
T COG1575         179 LLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRK  219 (303)
T ss_pred             HHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccH
Confidence            4445566667788889999999999999865 455434443

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=92.87  E-value=1.8  Score=40.05  Aligned_cols=36  Identities=17%  Similarity=0.118  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHhhccccccccccC-CCCCcccCCc
Q 037091          154 MVPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGD  189 (277)
Q Consensus       154 lla~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~  189 (277)
                      .+...+.+..-..+||..|+|.|+.. .|.-|+.-|+
T Consensus       164 ~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~  200 (282)
T TIGR01475       164 GIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGI  200 (282)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhch
Confidence            44455556677789999999999864 5788887773

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PLN02922 prenyltransferase

Probab=92.62  E-value=0.58  Score=44.54  Aligned_cols=49  Identities=12%  Similarity=0.048  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHhhccccccccccC-CCCCcccCCccChHHHHHHHHHHHH
Q 037091          153 CMVPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDFSMGEGLAITIASPL  204 (277)
Q Consensus       153 ~lla~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~IS~r~A~~l~~~ll~  204 (277)
                      .-+...+..+.....||+.|+|.|+.+ |++-|..=|   .+.+..+..++..
T Consensus       193 ~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG---~~~a~~l~~~l~~  242 (315)
T PLN02922        193 ASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLG---TEKGSRVVRWAVL  242 (315)
T ss_pred             HHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEC---hHHHHHHHHHHHH
Confidence            334455667788899999999999987 567776555   4444444444433

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=92.62  E-value=1.5  Score=40.37  Aligned_cols=36  Identities=17%  Similarity=0.229  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHhhccccccccccC-CCCCcccCCcc
Q 037091          155 VPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDF  190 (277)
Q Consensus       155 la~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~I  190 (277)
                      +..++......++||+.|+|.|+.+ .+.-|..=|+=
T Consensus       168 ~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~  204 (285)
T PRK12872        168 VFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKE  204 (285)
T ss_pred             HHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchH
Confidence            4444556666789999999999985 57888877763

>PLN00012 chlorophyll synthetase; Provisional

Probab=92.59  E-value=1.6  Score=42.72  Aligned_cols=35  Identities=17%  Similarity=0.123  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHhhccccccccccC-CCCCcccCCcc
Q 037091          156 PAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDF  190 (277)
Q Consensus       156 a~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~I  190 (277)
                      ...+...+....||+-|+|.|+.. ++.-|+.-|+=
T Consensus       260 ~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~  295 (375)
T PLN00012        260 LYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVE  295 (375)
T ss_pred             HHHHHHHHHHHHhhhcchhhHHHcCCcccceeechH
Confidence            344566778899999999999875 68899877763

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=92.36  E-value=3.1  Score=38.55  Aligned_cols=51  Identities=20%  Similarity=0.212  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHhhccccccccccC-CCCCcccCCccChHHHHHHHHHHHHHH
Q 037091          153 CMVPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDFSMGEGLAITIASPLMA  206 (277)
Q Consensus       153 ~lla~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~IS~r~A~~l~~~ll~lg  206 (277)
                      ..+...+........||+.|+|.|+.+ ++.-|.-=|   .+.+..+..++.+++
T Consensus       173 ~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG---~~~a~~~~~~l~~~~  224 (293)
T PRK06080        173 PALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLG---DKNARRLHAALLALA  224 (293)
T ss_pred             HHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeEC---cHhHHHHHHHHHHHH
Confidence            334445566777899999999999986 566666444   344444444444433

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=91.13  E-value=2.3  Score=39.54  Aligned_cols=39  Identities=18%  Similarity=0.100  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHhhccccccccccC-CCCCcccCCccC
Q 037091          153 CMVPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDFS  191 (277)
Q Consensus       153 ~lla~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~IS  191 (277)
                      ..++.++-..+-..+|++.|+|.|+.. .|.-|..-|+-+
T Consensus       165 l~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~  204 (281)
T TIGR01474       165 LYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNT  204 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhh
Confidence            345566667778889999999999975 688888888644

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=90.78  E-value=2.8  Score=39.26  Aligned_cols=48  Identities=19%  Similarity=0.127  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHhhccccccccccC-CCCCcccCCccChHHHHHHHHHHHHH
Q 037091          155 VPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDFSMGEGLAITIASPLM  205 (277)
Q Consensus       155 la~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~IS~r~A~~l~~~ll~l  205 (277)
                      +...+...+....||+.|+|.|+.+ |++-|.-=|   .+.+..+...+.+.
T Consensus       171 l~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG---~~~a~~l~~~l~~~  219 (284)
T TIGR00751       171 VATGLLACAVLNINNLRDIPTDARAGKNTLAVRLG---DARTRMYHQGLLAV  219 (284)
T ss_pred             HHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcc---hHhHHHHHHHHHHH
Confidence            3344555777889999999999986 566665445   44444444444333

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=90.35  E-value=4.1  Score=38.30  Aligned_cols=56  Identities=11%  Similarity=0.127  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHhhccccccccccC-CCCCcccCCccChHHHHHHHHHHHHHHHHHHHHh
Q 037091          155 VPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDFSMGEGLAITIASPLMAVAMGIML  213 (277)
Q Consensus       155 la~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l  213 (277)
                      .++.+...+..++||+-|+|.||.+ ++.-|.   ++-.+.+..+..++.+++.++....
T Consensus       167 ~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv---~lG~~~a~~~~~~l~~~a~~~~~~~  223 (282)
T PRK13105        167 AAFFLWGMASHAFGAVQDVVADREAGIASIAT---VLGARRTVRLAVGLYAAAAVLMLAL  223 (282)
T ss_pred             HHHHHHHHHHHHHHhCcchHhHHHcCCccchH---HhcHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344457778899999999999986 566665   4556777777777777665554433

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=90.22  E-value=2.9  Score=39.41  Aligned_cols=41  Identities=20%  Similarity=0.162  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHhhccccccccccC-CCCCcccCCccChHHHHHHHH
Q 037091          157 AIMMNNYANAINQLADVHIDKVN-KPHLPLACGDFSMGEGLAITI  200 (277)
Q Consensus       157 ~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~IS~r~A~~l~~  200 (277)
                      ..+...+....||+.|+|.|+.+ ++.-|..-|+   +.+..+..
T Consensus       192 ~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~---~~a~~~~~  233 (306)
T TIGR02056       192 YSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGI---ETAAWICV  233 (306)
T ss_pred             HHHHHHHHHHHHHccChHHHHHcCCcCcchhcCh---HHHHHHHH
Confidence            33466677799999999999975 6788876664   44444444

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=90.17  E-value=3.5  Score=39.02  Aligned_cols=33  Identities=18%  Similarity=0.197  Sum_probs=25.8

Q ss_pred             HHHHHHHHHhhccccccccccC-CCCCcccCCcc
Q 037091          158 IMMNNYANAINQLADVHIDKVN-KPHLPLACGDF  190 (277)
Q Consensus       158 ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~I  190 (277)
                      .+...+....||+.|+|.|+.. ++.-|+.-|+-
T Consensus       199 ~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~  232 (314)
T PRK07566        199 SLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEK  232 (314)
T ss_pred             HHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHH
Confidence            3445666899999999999975 67888877763

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=89.76  E-value=3.6  Score=38.14  Aligned_cols=39  Identities=13%  Similarity=-0.006  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHhhccccccccccC-CCCCcccCCcc
Q 037091          152 KCMVPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDF  190 (277)
Q Consensus       152 l~lla~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~I  190 (277)
                      +..+...+....-..+|++.|+|.|+.+ .|.-|+.-|+-
T Consensus       169 ~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~  208 (285)
T PRK12847        169 LLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNK  208 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccc
Confidence            3445556667777789999999999975 57888877753

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=89.51  E-value=17  Score=34.10  Aligned_cols=52  Identities=15%  Similarity=0.105  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHhhccccccccccC-CCCCcccCCccChHHHHHHHHHHHHHHHHH
Q 037091          155 VPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDFSMGEGLAITIASPLMAVAM  209 (277)
Q Consensus       155 la~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~IS~r~A~~l~~~ll~lgliL  209 (277)
                      ++..+...+...+||+-|+|.|+.. ++.-|..=|   .+.+..+..++.+++.++
T Consensus       172 ~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG---~~~a~~~~~~~~~~a~~~  224 (282)
T PRK12875        172 AGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLG---ERRTYAYCAACWLLAAAA  224 (282)
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHcCCccchhhcc---HhhHHHHHHHHHHHHHHH
Confidence            3445666777899999999999975 567776444   455665555555554444

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=88.33  E-value=2.4  Score=39.18  Aligned_cols=31  Identities=19%  Similarity=0.192  Sum_probs=24.7

Q ss_pred             HHHHHHHHhhccccccccccC-CCCCcccCCc
Q 037091          159 MMNNYANAINQLADVHIDKVN-KPHLPLACGD  189 (277)
Q Consensus       159 l~~~a~~viND~~D~eiDrin-kp~RPL~SG~  189 (277)
                      +...+....||+.|+|.|+.+ ++.-|+.=|+
T Consensus       172 l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~  203 (283)
T TIGR01476       172 LGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGV  203 (283)
T ss_pred             HHHHHHHHHHhccchhhHHHcCCcCcceEEcH
Confidence            445667899999999999985 6788877666

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=88.27  E-value=16  Score=34.17  Aligned_cols=35  Identities=20%  Similarity=0.208  Sum_probs=24.8

Q ss_pred             HHHHHHHHHhhccccccccccC-CCCCcccCCccChHHH
Q 037091          158 IMMNNYANAINQLADVHIDKVN-KPHLPLACGDFSMGEG  195 (277)
Q Consensus       158 ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~IS~r~A  195 (277)
                      .+........||+-|+|.|+.+ +++-|.   ++-.+.+
T Consensus       181 ~l~~~~il~~n~~~D~e~D~~~G~~Tlav---~lG~~~a  216 (296)
T PRK05951        181 GLLMALVLLSNNLRDIEDDERKGIPTLAV---IFGRRGA  216 (296)
T ss_pred             HHHHHHHHHHCCCccchhHHHCCCeeeee---eEcHhhH
Confidence            3445677899999999999986 556665   3444555

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=87.71  E-value=4.4  Score=38.00  Aligned_cols=37  Identities=14%  Similarity=0.170  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHhhccccccccccC-CCCCcccCCcc
Q 037091          154 MVPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDF  190 (277)
Q Consensus       154 lla~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~I  190 (277)
                      .+...+-+.+-..+|.+.|+|.|+.. .|.-|+.-|+-
T Consensus       168 ~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~  205 (291)
T PRK12886        168 GLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVN  205 (291)
T ss_pred             HHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCch
Confidence            34444445555678888999999864 68888887764

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=87.70  E-value=7.5  Score=36.06  Aligned_cols=40  Identities=10%  Similarity=0.068  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHhhccccccccccC-CCCCcccCCccC
Q 037091          152 KCMVPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDFS  191 (277)
Q Consensus       152 l~lla~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~IS  191 (277)
                      +..+..++-...-...|.+.|+|.|+.. .|.-|+.-|+=.
T Consensus       166 ~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~  206 (282)
T PRK12848        166 LLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYD  206 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhcccc
Confidence            4445566666777788999999999976 478888777643

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=87.17  E-value=4.3  Score=38.43  Aligned_cols=53  Identities=11%  Similarity=0.167  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHhhccccccccccC-CCCCcccCCccChHHHHHHHHHHHHH
Q 037091          153 CMVPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDFSMGEGLAITIASPLM  205 (277)
Q Consensus       153 ~lla~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~IS~r~A~~l~~~ll~l  205 (277)
                      ..++.++-..+-..+|+..|+|.|+.. -+.-|+-=|+-+.+-+..+..+..++
T Consensus       182 l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G~~a~~~~~~~~~~~v~l  235 (300)
T PRK13106        182 FVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLGKWALTFAGLNQLFSVVL  235 (300)
T ss_pred             HHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHhhhHHHHHHHHHHHHHHH
Confidence            344566667777899999999999865 47888777744444433333333333

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=87.16  E-value=7.9  Score=36.20  Aligned_cols=39  Identities=13%  Similarity=0.009  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHhhccccccccccC-CCCCcccCCcc
Q 037091          152 KCMVPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDF  190 (277)
Q Consensus       152 l~lla~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~I  190 (277)
                      +..+...+-..+-..+|++.|+|.|+.. .|.-|+-=|+-
T Consensus       163 ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~  202 (284)
T PRK12888        163 LLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVR  202 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCch
Confidence            3344555666678899999999999975 57788766653

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=86.80  E-value=5.8  Score=37.41  Aligned_cols=37  Identities=16%  Similarity=0.112  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHhhccccccccccC-CCCCcccCCcc
Q 037091          154 MVPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDF  190 (277)
Q Consensus       154 lla~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~I  190 (277)
                      .+...+.+..-...||+.|+|.|+.. .|.-|+.-|+-
T Consensus       181 ~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~  218 (297)
T PRK12871        181 MVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMK  218 (297)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechH
Confidence            35556667778899999999999975 68888888864

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=86.51  E-value=3.5  Score=37.88  Aligned_cols=34  Identities=21%  Similarity=0.342  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHhhccccccccccC-CCCCcccCCc
Q 037091          156 PAIMMNNYANAINQLADVHIDKVN-KPHLPLACGD  189 (277)
Q Consensus       156 a~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~  189 (277)
                      ..++...+-...||+.|+|.|+.+ .+.-|..-|+
T Consensus       163 ~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~  197 (279)
T PRK12884        163 MAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGE  197 (279)
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcH
Confidence            344455566889999999999876 5778876665

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=86.25  E-value=3.5  Score=39.02  Aligned_cols=38  Identities=11%  Similarity=0.125  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHhhccccccccccC-CCCCcccCCcc
Q 037091          153 CMVPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDF  190 (277)
Q Consensus       153 ~lla~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~I  190 (277)
                      ..+..++...+...+||+.|+|.|+.+ ++.-|+.=|+-
T Consensus       187 ~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~  225 (308)
T PRK12887        187 LTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQ  225 (308)
T ss_pred             HHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHH
Confidence            344555667788899999999999986 56777655543

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=86.22  E-value=3.4  Score=39.66  Aligned_cols=38  Identities=18%  Similarity=0.093  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHhhccccccccccC-CCCCcccCCccC
Q 037091          154 MVPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDFS  191 (277)
Q Consensus       154 lla~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~IS  191 (277)
                      .+...+...+...+||+.|+|.|+.. ++.-|+.=|+=.
T Consensus       186 ~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~  224 (331)
T PRK12392        186 AGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKN  224 (331)
T ss_pred             HHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhh
Confidence            34455667777889999999999975 577887666543

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=85.67  E-value=21  Score=33.55  Aligned_cols=37  Identities=16%  Similarity=0.220  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHhhccccccccccC-CCCCcccCCcc
Q 037091          154 MVPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDF  190 (277)
Q Consensus       154 lla~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~I  190 (277)
                      .+...+-+.+-..+|++.|+|.|+.. .|.-|+.-|+-
T Consensus       173 ~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~  210 (291)
T PRK12874        173 ALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEK  210 (291)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhH
Confidence            34555667777889999999999864 58888877763

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=85.44  E-value=3.7  Score=37.93  Aligned_cols=35  Identities=17%  Similarity=0.208  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHhhccccccccccC-CCCCcccCCc
Q 037091          155 VPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGD  189 (277)
Q Consensus       155 la~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~  189 (277)
                      +..++.+.+-..+||+.|+|.|+.. .|.-|+.-|+
T Consensus       161 ~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~  196 (279)
T PRK09573        161 LCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGI  196 (279)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhH
Confidence            3444555567788999999999975 5788886664

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=84.53  E-value=10  Score=35.54  Aligned_cols=42  Identities=7%  Similarity=0.015  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHHhhccccccccccCC-CCCcccCCccChH
Q 037091          152 KCMVPAIMMNNYANAINQLADVHIDKVNK-PHLPLACGDFSMG  193 (277)
Q Consensus       152 l~lla~ll~~~a~~viND~~D~eiDrink-p~RPL~SG~IS~r  193 (277)
                      +..+..++-..+-..+|++.|+|.|+..+ |.-|+.=|+=+..
T Consensus       170 ~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~  212 (290)
T PRK12870        170 LLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPE  212 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHH
Confidence            33456667777788999999999999754 7777766655433

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=82.19  E-value=7.4  Score=35.81  Aligned_cols=35  Identities=20%  Similarity=0.288  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHhhccccccccccC-CCCCcccCCc
Q 037091          155 VPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGD  189 (277)
Q Consensus       155 la~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~  189 (277)
                      +..++...+-..+||+.|+|.|+.+ .|.-|+.-|+
T Consensus       164 ~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~  199 (276)
T PRK12882        164 ALAALATLAREIIKDVEDIEGDRAEGARTLPILIGV  199 (276)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhH
Confidence            3334455667899999999999976 4788876666

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=81.48  E-value=6.1  Score=36.40  Aligned_cols=32  Identities=22%  Similarity=0.395  Sum_probs=24.5

Q ss_pred             HHHHHHHHhhccccccccccC-CCCCcccCCcc
Q 037091          159 MMNNYANAINQLADVHIDKVN-KPHLPLACGDF  190 (277)
Q Consensus       159 l~~~a~~viND~~D~eiDrin-kp~RPL~SG~I  190 (277)
                      +...+-...||+.|+|.|+.. .|.-|+.-|+-
T Consensus       165 l~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~  197 (277)
T PRK12883        165 LVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKK  197 (277)
T ss_pred             HHHHHHHHHhhhhhhccHHHcCCcCcChHhcHH
Confidence            344456678999999999975 58888877763

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=81.06  E-value=19  Score=34.20  Aligned_cols=37  Identities=16%  Similarity=0.027  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHhhccccccccccC-CCCCcccCCcc
Q 037091          154 MVPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDF  190 (277)
Q Consensus       154 lla~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~I  190 (277)
                      .+..++-...-..++++.|+|.|+.. .|.-|..-|+=
T Consensus       198 ~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~  235 (314)
T PRK12878        198 YAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDH  235 (314)
T ss_pred             HHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchh
Confidence            34445555566677899999999874 68888877763

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=80.86  E-value=21  Score=33.59  Aligned_cols=37  Identities=16%  Similarity=0.199  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHhhccccccccccCC-CCCcccCCc
Q 037091          153 CMVPAIMMNNYANAINQLADVHIDKVNK-PHLPLACGD  189 (277)
Q Consensus       153 ~lla~ll~~~a~~viND~~D~eiDrink-p~RPL~SG~  189 (277)
                      ..++.++-..+-.++.++.|+|.|+..+ +.-|+-=|+
T Consensus       164 l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~  201 (286)
T PRK12895        164 IFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGI  201 (286)
T ss_pred             HHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCC
Confidence            3455566666678999999999999764 555554443

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=80.69  E-value=26  Score=33.30  Aligned_cols=36  Identities=17%  Similarity=0.229  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHhhccccccccccCC-CCCcccCCccC
Q 037091          156 PAIMMNNYANAINQLADVHIDKVNK-PHLPLACGDFS  191 (277)
Q Consensus       156 a~ll~~~a~~viND~~D~eiDrink-p~RPL~SG~IS  191 (277)
                      +..+...+-.++.+..|+|.|+..+ +.-|..=|+-.
T Consensus       180 ~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~  216 (300)
T PRK12876        180 SFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKK  216 (300)
T ss_pred             HHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchh
Confidence            3444444556777899999999764 67777666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	277
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 5e-07
 Identities = 53/290 (18%), Positives = 89/290 (30%), Gaps = 78/290 (26%)

Query: 2   LLQINPRSSFSLKYHPLQH--AGSVKTFQTRVKHINGLANKSESKKYSVRCSSESS-FFL 58
           LL++ P  +  +          GS KT+         +A       Y V+C  +   F+L
Sbjct: 144 LLELRPAKNVLI------DGVLGSGKTW---------VALDV-CLSYKVQCKMDFKIFWL 187

Query: 59  TNKIGHSEDLVINRNHKLLSKSTVALAAQDGYSSESELVSTSFMQVLNKKCDAFYRL--T 116
             K  +S + V+    KLL +      ++  +SS  +L   S    L        RL  +
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-------RLLKS 240

Query: 117 RPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAF--KCMVPAIMMNNYANAINQLADVH 174
           +PY             LL L N  +        AF   C +  ++   +    + L+   
Sbjct: 241 KPY----------ENCLLVLLNVQN---AKAWNAFNLSCKI--LLTTRFKQVTDFLSAAT 285

Query: 175 IDKVNKPHLPLACGDFSMGEGLAI------TIASPLMAVAMGIMLRSPPLVIGFIIWCIV 228
              ++  H  +     +  E  ++           L    +       P  +  I     
Sbjct: 286 TTHISLDHHSMT---LTPDEVKSLLLKYLDCRPQDLPREVLTTN----PRRLSII----- 333

Query: 229 GGAYSIDLPPLL-RWKGNPLMAAVTII--SMNGL-----------LLLFP 264
                 D       WK        TII  S+N L           L +FP
Sbjct: 334 -AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 1e-05
 Identities = 37/196 (18%), Positives = 65/196 (33%), Gaps = 44/196 (22%)

Query: 3   LQINPRSSFSLKYHPLQHAGSVKTFQTRVKHINGL------ANKSESKKYSVRCSSESSF 56
                  S ++K         ++       + N L       N      +++ C      
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC------ 266

Query: 57  FLTNKIGHSEDLVINRNHKL---LSKSTVALAAQDGYS---SESELVSTSFMQVLNKKCD 110
               KI     L+  R  ++   LS +T    + D +S   +  E+ S   ++ L+ +  
Sbjct: 267 ----KI-----LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-LLKYLDCRPQ 316

Query: 111 AFYR---LTRPYSCVSIIAALLSVSLLPLQN-PADFTPKL--IIEAF-KCMVPAIMMNNY 163
              R    T P   +SIIA  +   L    N       KL  IIE+    + PA     +
Sbjct: 317 DLPREVLTTNPRR-LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 164 ANAINQLA----DVHI 175
               ++L+      HI
Sbjct: 376 ----DRLSVFPPSAHI 387

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00